Query 009437
Match_columns 535
No_of_seqs 367 out of 1545
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 13:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2442 Uncharacterized conser 100.0 1E-131 3E-136 1028.1 35.7 511 19-534 14-531 (541)
2 KOG2443 Uncharacterized conser 100.0 9E-66 1.9E-70 518.3 22.9 304 187-525 22-345 (362)
3 PF04258 Peptidase_A22B: Signa 100.0 2.1E-68 4.6E-73 547.0 -0.2 274 240-519 2-298 (298)
4 smart00730 PSN Presenilin, sig 100.0 1.7E-50 3.6E-55 404.4 22.2 242 244-511 3-249 (249)
5 cd02132 PA_GO-like PA_GO-like: 100.0 3E-29 6.6E-34 230.7 16.4 139 42-180 1-139 (139)
6 cd02129 PA_hSPPL_like PA_hSPPL 99.9 4.2E-23 9E-28 185.1 11.8 116 43-179 1-119 (120)
7 cd02126 PA_EDEM3_like PA_EDEM3 99.9 2E-22 4.4E-27 182.5 12.5 116 62-180 2-126 (126)
8 cd02127 PA_hPAP21_like PA_hPAP 99.9 2.7E-21 5.9E-26 173.3 13.1 110 66-180 1-116 (118)
9 cd02125 PA_VSR PA_VSR: Proteas 99.9 3.5E-21 7.6E-26 174.8 13.2 112 66-180 1-127 (127)
10 cd02123 PA_C_RZF_like PA_C-RZF 99.9 8.3E-21 1.8E-25 177.5 14.9 116 56-175 20-142 (153)
11 cd02122 PA_GRAIL_like PA _GRAI 99.8 1.1E-20 2.4E-25 173.8 13.1 110 63-180 18-138 (138)
12 cd04818 PA_subtilisin_1 PA_sub 99.8 3.3E-19 7.1E-24 159.1 12.8 114 63-180 1-118 (118)
13 cd04813 PA_1 PA_1: Protease-as 99.8 4.9E-19 1.1E-23 158.5 11.0 103 62-171 5-110 (117)
14 cd04816 PA_SaNapH_like PA_SaNa 99.8 6.5E-18 1.4E-22 151.9 13.5 113 63-180 4-122 (122)
15 cd02130 PA_ScAPY_like PA_ScAPY 99.7 3.6E-17 7.7E-22 147.0 12.6 113 58-180 7-122 (122)
16 cd02124 PA_PoS1_like PA_PoS1_l 99.7 2.7E-16 5.9E-21 143.2 11.5 89 86-180 38-129 (129)
17 cd04817 PA_VapT_like PA_VapT_l 99.7 6.2E-16 1.4E-20 142.3 13.7 96 77-176 34-137 (139)
18 PF06550 DUF1119: Protein of u 99.6 1.6E-14 3.4E-19 144.9 19.6 171 327-512 96-282 (283)
19 KOG4628 Predicted E3 ubiquitin 99.6 3.6E-15 7.9E-20 154.4 15.1 109 59-174 35-151 (348)
20 KOG3920 Uncharacterized conser 99.6 4E-15 8.6E-20 136.7 5.8 138 39-183 28-174 (193)
21 PF02225 PA: PA domain; Inter 99.5 2.7E-14 5.8E-19 122.7 7.2 91 78-170 5-101 (101)
22 cd00538 PA PA: Protease-associ 99.5 9.4E-14 2E-18 123.7 9.9 94 86-180 27-126 (126)
23 cd02133 PA_C5a_like PA_C5a_lik 99.4 4.2E-12 9.1E-17 117.3 13.2 94 78-177 25-119 (143)
24 cd04819 PA_2 PA_2: Protease-as 99.4 6.7E-12 1.5E-16 113.9 12.0 101 78-179 22-126 (127)
25 COG3389 Uncharacterized protei 99.4 2.7E-12 5.9E-17 124.6 9.7 160 330-508 97-271 (277)
26 cd04815 PA_M28_2 PA_M28_2: Pro 99.2 2.1E-11 4.5E-16 111.8 7.9 108 73-180 11-134 (134)
27 cd02120 PA_subtilisin_like PA_ 99.1 2E-10 4.4E-15 103.0 9.2 82 88-175 36-121 (126)
28 cd02128 PA_TfR PA_TfR: Proteas 98.8 1.4E-08 3E-13 97.7 8.6 92 77-171 27-154 (183)
29 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 4.1E-06 8.9E-11 78.5 10.6 90 78-170 19-132 (151)
30 cd02121 PA_GCPII_like PA_GCPII 98.3 3E-06 6.5E-11 84.0 8.7 92 78-172 44-189 (220)
31 cd04814 PA_M28_1 PA_M28_1: Pro 98.2 4E-06 8.6E-11 77.8 7.8 57 79-135 20-100 (142)
32 cd04820 PA_M28_1_1 PA_M28_1_1: 98.2 5.7E-06 1.2E-10 76.4 7.6 59 78-136 21-97 (137)
33 cd02131 PA_hNAALADL2_like PA_h 97.6 5.4E-05 1.2E-09 70.7 4.6 57 78-135 14-75 (153)
34 cd04821 PA_M28_1_2 PA_M28_1_2: 94.2 0.06 1.3E-06 51.0 4.5 57 79-135 22-103 (157)
35 PF01080 Presenilin: Presenili 93.1 0.14 3.1E-06 55.2 5.6 64 431-505 326-390 (403)
36 KOG2736 Presenilin [Signal tra 91.6 0.16 3.5E-06 53.8 3.5 68 431-508 320-387 (406)
37 KOG2195 Transferrin receptor a 67.1 6.2 0.00014 45.9 4.3 71 62-135 144-219 (702)
38 KOG2927 Membrane component of 58.8 11 0.00024 40.1 4.0 27 328-354 238-264 (372)
39 COG4882 Predicted aminopeptida 46.3 1E+02 0.0022 33.4 8.7 108 70-191 68-180 (486)
40 COG1786 Swiveling domain assoc 37.4 1E+02 0.0022 28.4 6.1 73 97-179 47-122 (131)
41 PRK11588 hypothetical protein; 31.2 4.7E+02 0.01 29.6 11.3 43 244-286 280-323 (506)
42 PF01080 Presenilin: Presenili 27.7 20 0.00044 39.1 0.0 23 367-390 172-194 (403)
43 PF06305 DUF1049: Protein of u 26.1 2.4E+02 0.0052 22.1 6.0 48 171-219 2-51 (68)
44 KOG2736 Presenilin [Signal tra 25.3 9.2E+02 0.02 26.4 11.9 18 372-389 182-199 (406)
45 PF03606 DcuC: C4-dicarboxylat 22.9 2.2E+02 0.0047 31.6 7.0 15 433-447 414-430 (465)
46 COG5540 RING-finger-containing 22.8 31 0.00068 36.2 0.3 33 104-136 150-182 (374)
47 PF06541 DUF1113: Protein of u 22.2 6.6E+02 0.014 23.5 9.7 26 362-387 129-154 (157)
48 PF03806 ABG_transport: AbgT p 22.0 1.2E+03 0.026 26.5 14.9 39 353-391 360-401 (502)
49 PRK03427 cell division protein 21.6 75 0.0016 33.9 2.8 25 192-216 9-33 (333)
50 PRK03955 hypothetical protein; 21.6 3.1E+02 0.0067 25.4 6.5 71 97-179 47-120 (131)
51 PF07787 DUF1625: Protein of u 20.8 2.3E+02 0.005 28.5 6.1 11 331-341 237-247 (248)
52 PF07698 7TM-7TMR_HD: 7TM rece 20.4 2.7E+02 0.0058 26.5 6.3 71 443-517 17-87 (194)
No 1
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=100.00 E-value=1.2e-131 Score=1028.06 Aligned_cols=511 Identities=52% Similarity=0.885 Sum_probs=486.4
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCeEEEEeeeeecCCCcceEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCCCC
Q 009437 19 CLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNK 98 (535)
Q Consensus 19 ~~~~~~d~~~~d~~~~~~p~c~n~f~lvkv~~wv~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~~~ 98 (535)
....++|..|+|+..|+.|||+|+||++|+++|+||++..++.+..++||..++...+.+...++..++|.|.|+++.+.
T Consensus 14 ~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~k 93 (541)
T KOG2442|consen 14 SFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSK 93 (541)
T ss_pred heEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCcc
Confidence 56688999999999999999999999999999999999999999999999999888877777788899999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEE
Q 009437 99 LTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSV 178 (535)
Q Consensus 99 l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V 178 (535)
++++++++.||+|+|++|+++||++||+|++|.||.+++..|.|.+.++..+++||++||++++|+++.+....|++|++
T Consensus 94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~ 173 (541)
T KOG2442|consen 94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL 173 (541)
T ss_pred ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred EEecCCCCccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhcCCCCccccccCCCCCCceeeCccchhhhhHHH
Q 009437 179 QLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIA 258 (535)
Q Consensus 179 ~l~~p~~p~vD~s~~~L~lmAv~tV~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~f~v~a 258 (535)
.+|+|++|.+|+++++||+|||+||.+|+|||++++||+..|+++.++|+.+++.+.+|++|++..++|+..|+.|++++
T Consensus 174 ~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~~ 253 (541)
T KOG2442|consen 174 ALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVTA 253 (541)
T ss_pred EEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhhh
Confidence 99999999999999999999999999999999999999999999988887777777888889999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccccCCceeeeccccccchhhhhhhhhHHHHHHhhh
Q 009437 259 SCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWA 338 (535)
Q Consensus 259 s~~L~~Ly~f~~~~~~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~w~ 338 (535)
|.+|++||||++ |++|+++++|||+|+.|||+|+.++++ |++.+..+.....|..|..+++.+++.++|++++++|+
T Consensus 254 c~~LvLlyfF~~-~~V~v~iiif~i~g~~gLy~Cl~~lv~--r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W~ 330 (541)
T KOG2442|consen 254 CGFLVLLYFFYS-YLVYVLIIIFCIGGAQGLYNCLAALVH--RLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVWA 330 (541)
T ss_pred HHHHHHHHHHHH-HHHHHHhhheeecccchHHHHHHHHHh--hhhhhcccccccccccCChhHHHHHHHHhhhheeEEEE
Confidence 999999999996 599999999999999999999999999 77665555555677888999999999999999999999
Q ss_pred hhhcCCchhhHHhHHHHHHHHHHHHhcccCchhhHHHHHHHHHHhhhheeeecccccc--cceeEEeeccCCCCCCCCCE
Q 009437 339 VYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFH--ESVMIVVARGDRSGEDGIPM 416 (535)
Q Consensus 339 ~~~~~~~~W~~~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~sp~~~~--~svMv~VA~~~~~~~~~~P~ 416 (535)
++||++|+|++||++|||+|++++|.+|+||+|++++||+++|+|||||||+||++|| ||||++||+|.++++|++||
T Consensus 331 v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~EkiPM 410 (541)
T KOG2442|consen 331 VFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEEKIPM 410 (541)
T ss_pred EeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCCCcce
Confidence 9999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred EEEecccc-----CCCCceeeccCccchhhHHHHHhhhhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 009437 417 LLKIPRLF-----DPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQP 491 (535)
Q Consensus 417 ~l~~P~~~-----~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QP 491 (535)
++++||++ ++|++|||||||||++||++|+||+|||...++. ++.||.|+++||++||++||+|+++| +.|||
T Consensus 411 lLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~-~~iYfv~~tvaYgiGLlvTfvaL~LM-~~GQP 488 (541)
T KOG2442|consen 411 LLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSV-SNIYFVWSTVAYGIGLLVTFVALVLM-KGGQP 488 (541)
T ss_pred EEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhcccc-ceeEEehhHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 99999999 8899999999999999999999999999998875 78999999999999999999999999 66999
Q ss_pred eehhhchhhhHhHHHHHhhcchhhhhhccCCCCCCCCCCCCCC
Q 009437 492 ALLYIVPFTLGTFLTLGKKRGELKTLWTRGEPERACPHIQLQS 534 (535)
Q Consensus 492 ALLYlvP~~l~~~~~~a~~rgel~~lw~~~~~~~~~~~~~~~~ 534 (535)
||||||||||++.+++|++|||++++|+|...+..|+|.+.++
T Consensus 489 ALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~~~~~~~~~p 531 (541)
T KOG2442|consen 489 ALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQKMPAPNDLNP 531 (541)
T ss_pred eEEEEechHHHHHHHHHHHHHHHHHHhccCCcccCCCCCcCCC
Confidence 9999999999999999999999999999999999888865543
No 2
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9e-66 Score=518.32 Aligned_cols=304 Identities=31% Similarity=0.525 Sum_probs=255.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhcCCCCccccccCCCCCCceeeCccchhh-hhHHHHHHHHHH
Q 009437 187 VVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVS-FVVIASCFLVML 265 (535)
Q Consensus 187 ~vD~s~~~L~lmAv~tV~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~-f~v~as~~L~~L 265 (535)
..+.+.+.+.+||+.+|++|++||....+|. |++++..+.++.++|.. ||+++||+|++|
T Consensus 22 ~~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~-------------------~d~~~~~es~t~~~a~~~fPi~~s~tLl~l 82 (362)
T KOG2443|consen 22 LLASAYVSLILIALLLIVIGSFRSLNYIKEN-------------------EDKKDKSESITKRDAGKMFPIIGSCTLLLL 82 (362)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHhhhhhhh-------------------hcccchhhhhhhhhhcccCCcccchHHHHH
Confidence 4677889999999999999999998766541 11123445677777777 999999999999
Q ss_pred HHHhHHHH---HHHHHHHHHHHhHHHHHHHHHHHHhcc--cccc---------ccCCceeeeccccccchhhhhhhhhHH
Q 009437 266 YKLMSFWF---IEVLVVLFCIGGVEGLQTCVVALLSCF--RWFQ---------HAGDSFIKVPFFGAVSYLTLAVCPFCI 331 (535)
Q Consensus 266 y~f~~~~~---~~~l~~~f~i~g~~~l~~~l~~~~~~~--~~~~---------~~~~~~~~~p~~~~~~~~~l~~~~~~~ 331 (535)
|++++... ..+++.||++.|+.++.+.+.|+++.+ +..+ +....+..--+.++++..+++.+..|.
T Consensus 83 yl~fk~ls~~~~~ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~ 162 (362)
T KOG2443|consen 83 YLLFKPLSKELINLLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLFPRGPGEKKEFICNGKFTRAQIVALVLSS 162 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheeeeccCCcccceeecccccHHHHHHHHHHH
Confidence 99875432 337889999999999999999887710 0111 111111112234678888999999999
Q ss_pred HHHHhhhhhhcCCchhhHHhHHHHHHHHHHHHhcccCchhhHHHHHHHHHHhhhheeeecccccccceeEEeeccCCCCC
Q 009437 332 AFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGE 411 (535)
Q Consensus 332 ~~~~~w~~~~~~~~~W~~~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~sp~~~~~svMv~VA~~~~~~~ 411 (535)
.++++|++++| |++||++|+++|++.++.+||||+|+|++||.++|+|||||||+| +||++|||+.+
T Consensus 163 ~i~v~~ll~~H----Wl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVFgT------nVMVtVAt~~D--- 229 (362)
T KOG2443|consen 163 MIVVWYLLTKH----WLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFGT------NVMVTVATSLD--- 229 (362)
T ss_pred HHHHHHHhhhH----HHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEecC------ceEEEeecccC---
Confidence 99999999885 999999999999999999999999999999999999999999965 69999999964
Q ss_pred CCCCEEEEeccccCCC----CceeeccCccchhhHHHHHhhhhhhhcccc-cCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 009437 412 DGIPMLLKIPRLFDPW----GGYSVIGFGDIILPGLIVAFSLRYDWLMKK-NFRSGYFVWAMTAYGLGLLITYVALNLMD 486 (535)
Q Consensus 412 ~~~P~~l~~P~~~~~~----~~~s~LGlGDIviPGl~i~~~~rfD~~~~~-~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~ 486 (535)
+|+|+++|+..... .+||||||||||+||+|+|+++|||.++++ +..+.||..+++||.+||..|+++|+++
T Consensus 230 --~PikL~fP~~l~~~~~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~t~i~Y~~gL~~ti~~~~~F- 306 (362)
T KOG2443|consen 230 --APIKLVFPQKLLFPGLTASNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHNTFIAYFLGLLTTIVVLHIF- 306 (362)
T ss_pred --CceEEecchhhccCCCccccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEEeHHHHHhhhHHHhhhhhhh-
Confidence 89999999976543 359999999999999999999999987654 2446899999999999999999999999
Q ss_pred CCCcceehhhchhhhHhHHHHHhhcchhhhhhccCCCCC
Q 009437 487 GHGQPALLYIVPFTLGTFLTLGKKRGELKTLWTRGEPER 525 (535)
Q Consensus 487 ~~~QPALLYlvP~~l~~~~~~a~~rgel~~lw~~~~~~~ 525 (535)
+++|||||||||+|+++.+++|++|||++.+|+++++..
T Consensus 307 kaAQPALLYlVP~~l~~~ll~A~~~gdlk~l~s~~~~~~ 345 (362)
T KOG2443|consen 307 KAAQPALLYLVPACLGPLLLMAYWRGDLKVLWSFDESTK 345 (362)
T ss_pred hccchhhhhhhHHHHhHHHHHHHHccchHhhhCccccCC
Confidence 999999999999999999999999999999999998543
No 3
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.
Probab=100.00 E-value=2.1e-68 Score=546.99 Aligned_cols=274 Identities=43% Similarity=0.776 Sum_probs=1.0
Q ss_pred CCCceeeCccchhhhhHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhHHHHHHHHHHHHhcccccc-----ccCC
Q 009437 240 SNGFVDINMASAVSFVVIASCFLVMLYKLMSFWF------IEVLVVLFCIGGVEGLQTCVVALLSCFRWFQ-----HAGD 308 (535)
Q Consensus 240 ~~~~~~i~~~~a~~f~v~as~~L~~Ly~f~~~~~------~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~-----~~~~ 308 (535)
|++.+++|.++|++||+++|++|++||++++.+. .++++.+|+++|+.++..++.+.+. +.++ +..+
T Consensus 2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~--~~~~~~~~~~~~~ 79 (298)
T PF04258_consen 2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLT--YIFPFFPCRSFPW 79 (298)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcccccccccc
Confidence 4567789999999999999999999999987654 4689999999999998777776654 3221 1122
Q ss_pred ceeee--------ccccccchhhhhhhhhHHHHHHhhhhhhcCCchhhHHhHHHHHHHHHHHHhcccCchhhHHHHHHHH
Q 009437 309 SFIKV--------PFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCA 380 (535)
Q Consensus 309 ~~~~~--------p~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~W~~~nilgi~~~i~~i~~i~l~s~k~~~ilL~~l 380 (535)
.+.++ ++.++.+..+++..++|+++++.|+++|++ +|++||++|+|+|+++++.+|+||+|++++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~--~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~l 157 (298)
T PF04258_consen 80 KKWKLSFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNE--HWILQNILGICFCINIISLIRLPSFKTATILLIGL 157 (298)
T ss_dssp -----------------------------------S--------------------------------------------
T ss_pred ceEEEEEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccc--hHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHH
Confidence 22222 455678888999999999999999998876 59999999999999999999999999999999999
Q ss_pred HHhhhheeeecccccccceeEEeeccCCCCCCCCCEEEEeccccC----CCCceeeccCccchhhHHHHHhhhhhhhccc
Q 009437 381 FLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFD----PWGGYSVIGFGDIILPGLIVAFSLRYDWLMK 456 (535)
Q Consensus 381 f~YDif~VF~sp~~~~~svMv~VA~~~~~~~~~~P~~l~~P~~~~----~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~ 456 (535)
|+|||||||+||++||+|||++|||+..++++++|+|+++|+..+ ..++|||||+|||++||+|+++|+|||+.++
T Consensus 158 f~YDif~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~ 237 (298)
T PF04258_consen 158 FLYDIFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRN 237 (298)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhc
Confidence 999999999999999999999999995445578899999999863 4688999999999999999999999999884
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCcceehhhchhhhHhHHHHHhhcchhhhhhc
Q 009437 457 KNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWT 519 (535)
Q Consensus 457 ~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALLYlvP~~l~~~~~~a~~rgel~~lw~ 519 (535)
++ +++||.++++||++||++|+++++++ ++||||||||||+|+++++++|++|||++++|+
T Consensus 238 ~~-~~~Yf~~~~~~Y~~Gl~~t~~~~~~~-~~~QPALlylvP~~l~~~~~~a~~r~el~~~w~ 298 (298)
T PF04258_consen 238 KS-RKPYFIASLIGYALGLLLTFVALHLF-KHGQPALLYLVPCTLGSVLLVAWIRGELKDFWN 298 (298)
T ss_dssp ---------------------------------------------------------------
T ss_pred cc-cchHHHHHHHHHHHHHHHHHHHHHHh-CCCCCeehHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence 32 45799999999999999999999999 899999999999999999999999999999997
No 4
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=100.00 E-value=1.7e-50 Score=404.43 Aligned_cols=242 Identities=38% Similarity=0.618 Sum_probs=214.4
Q ss_pred eeeCccchhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccccCCceeeeccccccchhh
Q 009437 244 VDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLT 323 (535)
Q Consensus 244 ~~i~~~~a~~f~v~as~~L~~Ly~f~~~~~~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 323 (535)
+.+|+++++.||+++|++|++||++++.| +..+.++|+++|+.+++.++.+... .. .+..+
T Consensus 3 ~~~n~~~~i~fii~~s~~Ll~Ly~~~~~~-~i~~~~~f~~~~~~~~~~~~~~~~~--~~----------------~~~~~ 63 (249)
T smart00730 3 SLLNSLVAIVFPIVATFVLVLLYKFFKYL-VIVLVIYFSSLGVLFLYSLLYPLEV--FR----------------VDYPT 63 (249)
T ss_pred ccccHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------HhHHH
Confidence 46789999999999999999999999866 7888999999999999988776544 11 23455
Q ss_pred hhhhhhHHHHHHhhhhhhcCCchhhHHhHHHHHHHHHHHHhcccCchhhHHHHHHHHHHhhhheeeecccccccceeEEe
Q 009437 324 LAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVV 403 (535)
Q Consensus 324 l~~~~~~~~~~~~w~~~~~~~~~W~~~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~sp~~~~~svMv~V 403 (535)
.....++++++.+|.++++ ++|+.||++|+++++.+++.+|+||+|++++||+++++||+||||+||. +++||++|
T Consensus 64 ~~~~~~~~~v~~~~~~~~~--~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~--~~~vMv~v 139 (249)
T smart00730 64 LLILLLNFAVVGFWCIHRK--GAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEV 139 (249)
T ss_pred HHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCC--CchHHhhH
Confidence 6777788888999998886 6899999999999999999999999999999999999999999999997 89999999
Q ss_pred eccCCCCCCCCCEEEEeccc-----cCCCCceeeccCccchhhHHHHHhhhhhhhcccccCCcchHHHHHHHHHHHHHHH
Q 009437 404 ARGDRSGEDGIPMLLKIPRL-----FDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLIT 478 (535)
Q Consensus 404 A~~~~~~~~~~P~~l~~P~~-----~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t 478 (535)
|++.+...|.+|+++..||. .+..+++++||+|||++||+++++|+|||..+++ +..||..+++||++||+.|
T Consensus 140 A~~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~--~~~yf~~~~~ay~~GL~~t 217 (249)
T smart00730 140 ATGRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRS--DSNYFLACFVAYGIGLILT 217 (249)
T ss_pred hccCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccC--CcccHHHHHHHHHHHHHHH
Confidence 99976332468999999984 2235689999999999999999999999987543 4689999999999999999
Q ss_pred HHHHHhhcCCCcceehhhchhhhHhHHHHHhhc
Q 009437 479 YVALNLMDGHGQPALLYIVPFTLGTFLTLGKKR 511 (535)
Q Consensus 479 ~~~~~~~~~~~QPALLYlvP~~l~~~~~~a~~r 511 (535)
+++++++ ++|||||+|+||+++++.++.|+.|
T Consensus 218 ~~~l~~~-~~aqPALlylvp~~l~~~~~~~~~r 249 (249)
T smart00730 218 LVLLALF-KKAQPALPYLVPFTLVFYLLTALLR 249 (249)
T ss_pred HHHHHHh-CCCCccHHHHHHHHHHHHHHHHHhC
Confidence 9999999 8999999999999999999999876
No 5
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.96 E-value=3e-29 Score=230.73 Aligned_cols=139 Identities=53% Similarity=0.895 Sum_probs=127.1
Q ss_pred CeEEEEeeeeecCCCcceEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCCCCCCCcEEEEecCCCCHHHHHHHHH
Q 009437 42 NFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAE 121 (535)
Q Consensus 42 ~f~lvkv~~wv~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq 121 (535)
+|+||++.+|++|++.++|.+.+|+||..+|++..++.+++++.++|.++|++.+++++|+|+||+||+|+|.+|++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~~~~g~IvLV~RG~C~F~~K~~nA~ 80 (139)
T cd02132 1 PFQLVKVQNWVDGDEGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTSKLSGSIALVERGECAFTEKAKIAE 80 (139)
T ss_pred CceEEEeeeccCCccccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCcccCCeEEEEECCCCCHHHHHHHHH
Confidence 48999999999999999999999999999998877788999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 122 EANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 122 ~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
++||+++||||+.+++..|.+.++++..+++||+++|++++|++|++.+++|++|++++
T Consensus 81 ~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 81 AGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred HcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 99999999999987777776543344456899999999999999999999999998864
No 6
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.89 E-value=4.2e-23 Score=185.06 Aligned_cols=116 Identities=22% Similarity=0.379 Sum_probs=98.4
Q ss_pred eEEEEeeeeecCCCcceEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCC---CCCCCcEEEEecCCCCHHHHHHH
Q 009437 43 FVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK---NKLTGEAILVHRGGCSFTAKANF 119 (535)
Q Consensus 43 f~lvkv~~wv~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~---~~l~g~IaLV~RG~CsF~~Ka~n 119 (535)
||+.++++|. .+|++.+++...||+.++|..||++.+ .+++|+|+||+||+|+|.+|++|
T Consensus 1 ~~~~~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~ 63 (120)
T cd02129 1 YCILYNSQWA-----------------SLPSDLDKATLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARL 63 (120)
T ss_pred CcEEECCcce-----------------ECCcchhhCcceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHH
Confidence 7889999994 689888889999999999999999987 47899999999999999999999
Q ss_pred HHhcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEE
Q 009437 120 AEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQ 179 (535)
Q Consensus 120 Aq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~ 179 (535)
||++||+|+|||||++.. .+.+ +.....+++||++||++++|++|++.+. +.|+|+
T Consensus 64 Aq~aGA~aVII~nn~~~~-~~~~-~~~~~~~v~IP~v~Is~~dG~~i~~~l~--~~~~v~ 119 (120)
T cd02129 64 AQSLGAEGLLIVSRERLV-PPSG-NRSEYEKIDIPVALLSYKDMLDIQQTFG--DSVKVA 119 (120)
T ss_pred HHHCCCCEEEEEECCCCC-CCCC-CCCCCcCCcccEEEEeHHHHHHHHHHhc--cCcEEe
Confidence 999999999999997643 2221 1222467899999999999999999996 445554
No 7
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.88 E-value=2e-22 Score=182.52 Aligned_cols=116 Identities=31% Similarity=0.515 Sum_probs=98.4
Q ss_pred eeecCCCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCc---
Q 009437 62 GVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--- 136 (535)
Q Consensus 62 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~~--~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~--- 136 (535)
+.+|+||.++|... ...++|+.++|.++|++.++ +++|||+||+||+|+|.+|+++||++||+|+||+||.++
T Consensus 2 ~~pa~FG~~~~~~~--~~~g~l~~~~p~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~ 79 (126)
T cd02126 2 AGPAQFGMDLTGDK--AGVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSS 79 (126)
T ss_pred CCCcccCCcCCCCC--CceEEEEeCCchhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 46899999999753 36789999999999998874 689999999999999999999999999999999998653
Q ss_pred ----ccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 137 ----LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 137 ----l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
.+.|.+.. +..++++||+++|++++|++|++.+++|.+|++.+
T Consensus 80 ~~~~~~~m~~~~-~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 80 DTAPMFAMSGDG-DSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred cccceeEeecCC-CCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 34565432 12346899999999999999999999999998864
No 8
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.86 E-value=2.7e-21 Score=173.32 Aligned_cols=110 Identities=28% Similarity=0.502 Sum_probs=93.9
Q ss_pred CCCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCc----ccc
Q 009437 66 RFGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE----LFK 139 (535)
Q Consensus 66 ~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~~--~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~----l~~ 139 (535)
.||..++.+ +..++|+.++|.+||++.++ +++|+|+||+||+|+|.+|+++||++||+|+||||+.++ .+.
T Consensus 1 ~~~~~~~~~---~~~~~lv~~~p~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~ 77 (118)
T cd02127 1 DFGTIFNTR---YKHVPLVPADPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVE 77 (118)
T ss_pred CCCcccccc---ccceEEEECCccccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceE
Confidence 488888876 45679999999999998763 789999999999999999999999999999999998643 345
Q ss_pred cccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 140 MVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 140 M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
|.++ +...+++||+++|++++|+.|++.+++|..+++.+
T Consensus 78 m~~~--~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 78 MIQD--DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred ecCC--CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEee
Confidence 6653 23467899999999999999999999999887654
No 9
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.86 E-value=3.5e-21 Score=174.75 Aligned_cols=112 Identities=29% Similarity=0.430 Sum_probs=91.8
Q ss_pred CCCCccccccCCceeEEEEec-CCCCCCCCCCC---------CCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCC
Q 009437 66 RFGRTLEAKEKDASQNRLVLA-DPPDCCSKPKN---------KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKT 135 (535)
Q Consensus 66 ~FG~~lp~~~~~~~~~~Lv~~-~p~~gC~~~~~---------~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~ 135 (535)
+||.+ |+.. ...+.|+.+ ++.++|++.++ ..+++|+||+||+|+|.+|++|||++||+++||||+.+
T Consensus 1 ~FG~~-~yg~--~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~ 77 (127)
T cd02125 1 NFGLP-QYGG--TLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD 77 (127)
T ss_pred CCCCC-CcCC--eeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC
Confidence 48844 5543 366777776 67899998863 36789999999999999999999999999999999987
Q ss_pred c-ccccccCCC----CCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 136 E-LFKMVCESN----ETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 136 ~-l~~M~~~~~----~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
+ +..|.++++ +...+++||+++|++++|++|++.+++|++|+|++
T Consensus 78 ~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 78 EPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred CccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 5 567765322 12357899999999999999999999999999875
No 10
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.85 E-value=8.3e-21 Score=177.51 Aligned_cols=116 Identities=26% Similarity=0.418 Sum_probs=99.8
Q ss_pred CcceEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCC------CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEE
Q 009437 56 EDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK------NKLTGEAILVHRGGCSFTAKANFAEEANASAIL 129 (535)
Q Consensus 56 e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~------~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avI 129 (535)
+..++.+.+|+||...+. ++.+++|+.++|.+||++.+ +...|+|+||+||+|+|.+|++|||++||+|+|
T Consensus 20 ~~~~~~~~~A~FG~~~~~---~~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avI 96 (153)
T cd02123 20 LTDEFDDLPANFGPIPPG---SGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAI 96 (153)
T ss_pred ccceEeeecccCCCCCCC---CceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEE
Confidence 567899999999987663 35788999999999999876 478899999999999999999999999999999
Q ss_pred EEeCCCc-ccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcE
Q 009437 130 IINNKTE-LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSV 175 (535)
Q Consensus 130 V~N~~~~-l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 175 (535)
|||++++ +..|.+.+. ...+++||+++|++++|+.|++.+++++.
T Consensus 97 I~n~~~~~~~~m~~~~~-~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 97 VYNDESNDLISMSGNDQ-EIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EEECCCCcceeccCCCC-CCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9999754 667765422 22578999999999999999999998877
No 11
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.84 E-value=1.1e-20 Score=173.78 Aligned_cols=110 Identities=26% Similarity=0.389 Sum_probs=92.2
Q ss_pred eecCCCCccccccCCceeEEEEec---CCCCCCCCCCC-----CCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCC
Q 009437 63 VGARFGRTLEAKEKDASQNRLVLA---DPPDCCSKPKN-----KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK 134 (535)
Q Consensus 63 ~~A~FG~~lp~~~~~~~~~~Lv~~---~p~~gC~~~~~-----~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~ 134 (535)
..|+||.++|... ..+.|+.. ++.+||++.++ +++|+||||+||+|+|.+|++|||++||+++||||++
T Consensus 18 ~~a~fg~~~~~~~---~~G~l~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~ 94 (138)
T cd02122 18 ESGRYGEHSPKEE---AKGLVVVPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNP 94 (138)
T ss_pred cccccCCCCCCCc---cEEEEecCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 5899998888764 56667654 45899998764 5889999999999999999999999999999999998
Q ss_pred C-c--ccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 135 T-E--LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 135 ~-~--l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
+ . .+.|... ...+||+++|++++|++|++.+++|++|++++
T Consensus 95 ~~~~~~~~m~~~-----~~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 95 GTGNETVKMSHP-----GTGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCceeeccCC-----CCCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 6 2 5566542 12478999999999999999999999998863
No 12
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.80 E-value=3.3e-19 Score=159.13 Aligned_cols=114 Identities=32% Similarity=0.481 Sum_probs=98.5
Q ss_pred eecCCCCccccccCCceeEEEEecCCCCCCCCCC--CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCc--cc
Q 009437 63 VGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK--NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--LF 138 (535)
Q Consensus 63 ~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~--~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~--l~ 138 (535)
++|+||..++........++++.+++.++|++.. ++++|||+|++||+|+|.+|+++|+++||+|+|+||+.++ .+
T Consensus 1 ~~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~ 80 (118)
T cd04818 1 VSAGFGPALTNVTADVVLAGAAPASNTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPI 80 (118)
T ss_pred CCcccCCcCccccccceeEEEecCCcccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcce
Confidence 4799999998755456889999999999999886 5799999999999999999999999999999999999764 44
Q ss_pred ccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 139 KMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 139 ~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
.|.+. .....||+++|++++|++|++++++|++|++++
T Consensus 81 ~~~~~----~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 81 TMGGD----DPDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred eccCC----CCCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 55432 234679999999999999999999999998874
No 13
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.79 E-value=4.9e-19 Score=158.53 Aligned_cols=103 Identities=26% Similarity=0.469 Sum_probs=84.4
Q ss_pred eeecCCCCccccccCCceeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCc--cc
Q 009437 62 GVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--LF 138 (535)
Q Consensus 62 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~--l~ 138 (535)
+..|+||+.+....++ ...++|.++|++.+ ++++|+||||+||+|+|.+|++|||++||+++||||+.++ +.
T Consensus 5 ~~~~~~~~~~~~~~~~-----~~~~~p~~gC~~~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~ 79 (117)
T cd04813 5 GRYASFSPILNPHLRG-----SYKVSPTDACSLQEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLI 79 (117)
T ss_pred ccccccCCccCccccc-----cccCCCCCCCCCCCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccce
Confidence 3678999887665432 12378999999886 5899999999999999999999999999999999998763 45
Q ss_pred ccccCCCCCCCcccceEEEechhhhHhHHHHHh
Q 009437 139 KMVCESNETDVDIRIPAIMLPQDAGANLEKLIK 171 (535)
Q Consensus 139 ~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (535)
.|.+. +...+++||+++|++++|+.|++.+.
T Consensus 80 ~m~~~--~~~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 80 TMFSN--GDTDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred ecccC--CCCCCcEEEEEEEcHHHHHHHHHhcc
Confidence 66643 22467899999999999999988763
No 14
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.76 E-value=6.5e-18 Score=151.90 Aligned_cols=113 Identities=24% Similarity=0.470 Sum_probs=90.2
Q ss_pred eecCCCCccccccCCceeEEEEecCC--CCCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcc
Q 009437 63 VGARFGRTLEAKEKDASQNRLVLADP--PDCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL 137 (535)
Q Consensus 63 ~~A~FG~~lp~~~~~~~~~~Lv~~~p--~~gC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l 137 (535)
+...|++..|. ++.+++++..++ .++|++.+ .+++|||+|++||+|+|.+|++|||++||+|+|+||+.++.
T Consensus 4 ~~~~~~~~~~~---~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~ 80 (122)
T cd04816 4 VSLSYSPSTPP---GGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGG 80 (122)
T ss_pred EEEeccCCCCC---CCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCc
Confidence 34567765553 468889998765 59999865 47999999999999999999999999999999999987642
Q ss_pred -cccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 138 -FKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 138 -~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
..+.- .+...+..||+++|++++|++|++.+++|.+|++++
T Consensus 81 ~~~~~~--~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 81 GTAGTL--GAPNIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred cccccc--cCCCCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 11111 111245789999999999999999999999998864
No 15
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.73 E-value=3.6e-17 Score=147.02 Aligned_cols=113 Identities=24% Similarity=0.352 Sum_probs=87.9
Q ss_pred ceEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCC--CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCC-
Q 009437 58 TEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK--NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK- 134 (535)
Q Consensus 58 ~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~--~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~- 134 (535)
..|...+..|.+ .. ..+++++.. +.++|++.+ .+++|||+||+||+|+|.+|+++||++||+++||||+.
T Consensus 7 ~~~~~~~~~~~~---~~---~~~g~lv~~-~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~ 79 (122)
T cd02130 7 EAIPTTAFTYSP---AG---EVTGPLVVV-PNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVP 79 (122)
T ss_pred EEEeeeecccCC---CC---CcEEEEEEe-CCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 345555544442 22 356888886 478999755 47999999999999999999999999999999999987
Q ss_pred CcccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 135 TELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 135 ~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
+....... ....+..||+++|++++|+.|++.+++|++|++++
T Consensus 80 ~~~~~~~~---~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 80 AGGLSGTL---GEPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred Cccccccc---CCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 33322111 12235789999999999999999999999998864
No 16
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.68 E-value=2.7e-16 Score=143.16 Aligned_cols=89 Identities=28% Similarity=0.358 Sum_probs=73.2
Q ss_pred cCCCCCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhh
Q 009437 86 ADPPDCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDA 162 (535)
Q Consensus 86 ~~p~~gC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~ 162 (535)
+++.+||++.+ .+++|+|+||+||+|+|.+|++|||++||+++||||++++...+... ....+|.+++ +++
T Consensus 38 ~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~-----~~~~~~~~~~-~~~ 111 (129)
T cd02124 38 SVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGS-----DADSIIAAVT-PED 111 (129)
T ss_pred CCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCC-----CCcceeeEEe-HHH
Confidence 35789999875 36899999999999999999999999999999999998765444321 1234555555 999
Q ss_pred hHhHHHHHhcCcEEEEEE
Q 009437 163 GANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 163 G~~L~~~L~~g~~V~V~l 180 (535)
|++|++.+++|++|++++
T Consensus 112 G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 112 GEAWIDALAAGSNVTVDF 129 (129)
T ss_pred HHHHHHHHhcCCeEEEeC
Confidence 999999999999998874
No 17
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.67 E-value=6.2e-16 Score=142.31 Aligned_cols=96 Identities=22% Similarity=0.313 Sum_probs=76.6
Q ss_pred CceeEEEEecCCCCCCCCCCCCCCCcEEEEecCCCC-----HHHHHHHHHhcCCcEEEEEeCC--Cccc-ccccCCCCCC
Q 009437 77 DASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCS-----FTAKANFAEEANASAILIINNK--TELF-KMVCESNETD 148 (535)
Q Consensus 77 ~~~~~~Lv~~~p~~gC~~~~~~l~g~IaLV~RG~Cs-----F~~Ka~nAq~aGA~avIV~N~~--~~l~-~M~~~~~~~~ 148 (535)
+..+++|+..... +|+....+.+|||+||+||+|+ |.+|++|||++||+|+|||||. ++.+ .+.+. ..
T Consensus 34 g~~tg~lv~~g~~-g~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~---~~ 109 (139)
T cd04817 34 GSATGSLYYCGTS-GGSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVD---TN 109 (139)
T ss_pred CcceEEEEEccCC-CccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccC---CC
Confidence 3567889887743 4855556899999999999999 9999999999999999999998 4433 22221 12
Q ss_pred CcccceEEEechhhhHhHHHHHhcCcEE
Q 009437 149 VDIRIPAIMLPQDAGANLEKLIKNNSVV 176 (535)
Q Consensus 149 ~~i~IPvv~Is~~~G~~L~~~L~~g~~V 176 (535)
.+++||+++|++++|++|++.+.++.+|
T Consensus 110 ~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 110 NDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 3689999999999999999999655544
No 18
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=99.63 E-value=1.6e-14 Score=144.85 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=127.2
Q ss_pred hhhHHHHHHhhhhhhcCCchhhHHhHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHhhhheeeecccccccceeEEee
Q 009437 327 CPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQI--VRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVA 404 (535)
Q Consensus 327 ~~~~~~~~~~w~~~~~~~~~W~~~nilgi~~~i~~i~~--i~l~s~k~~~ilL~~lf~YDif~VF~sp~~~~~svMv~VA 404 (535)
...++++++..+ .++ +|+..|+.|+.++..+... +++ ++-.+.+||..+-+||..-||.|+ +|++.|
T Consensus 96 ~~~ai~~~~~L~-~yp---EWYviD~~Gil~~aG~aaiFGISl-~~lpaiiLL~iLAVYDaISVYkTk------HMltLA 164 (283)
T PF06550_consen 96 LILAIALTALLY-KYP---EWYVIDIAGILMGAGAAAIFGISL-GILPAIILLAILAVYDAISVYKTK------HMLTLA 164 (283)
T ss_pred HHHHHHHHHHHH-hcc---hHHHHHHHHHHHHhHHHHHHhhhc-cHHHHHHHHHHHHHhhhhheecch------HHHHHH
Confidence 344444444333 344 4999999999999875554 555 556689999999999999999776 899999
Q ss_pred ccCCCCCCCCCEEEEeccccCC--------------CCceeeccCccchhhHHHHHhhhhhhhcccccCCcchHHHHHHH
Q 009437 405 RGDRSGEDGIPMLLKIPRLFDP--------------WGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTA 470 (535)
Q Consensus 405 ~~~~~~~~~~P~~l~~P~~~~~--------------~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~~YF~~~~~~ 470 (535)
+|.. +.++|+++++|+..+. .++-.++|+||.++|.++++-+..|.....-...+-.-+.+++|
T Consensus 165 egv~--d~klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~~~~~~~~lpalga~~G 242 (283)
T PF06550_consen 165 EGVM--DLKLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSAPILGGLNLPALGAMLG 242 (283)
T ss_pred HHHh--ccCCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccccchhhhhHHHHHHHHH
Confidence 9975 3689999999986421 13457999999999999999999996553221111223566777
Q ss_pred HHHHHHHHHHHHHhhcCCCcceehhhchhhhHhHHHHHhhcc
Q 009437 471 YGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRG 512 (535)
Q Consensus 471 Y~~GL~~t~~~~~~~~~~~QPALLYlvP~~l~~~~~~a~~rg 512 (535)
-.+|+.+-+.. .+++++||+|.||.-..++..++-++..|
T Consensus 243 tl~gl~vL~~~--v~kgrp~aGLP~LN~GaI~Gflig~l~sg 282 (283)
T PF06550_consen 243 TLAGLAVLLRF--VMKGRPQAGLPFLNGGAIAGFLIGALASG 282 (283)
T ss_pred HHHHHHHHHHH--HHcCCCCCCCCccchhHHHHHHHHHHHcC
Confidence 77777766543 34689999999999999988887776544
No 19
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.6e-15 Score=154.35 Aligned_cols=109 Identities=27% Similarity=0.425 Sum_probs=91.7
Q ss_pred eEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCCC------CCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEe
Q 009437 59 EYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN------KLTGEAILVHRGGCSFTAKANFAEEANASAILIIN 132 (535)
Q Consensus 59 ~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~~------~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N 132 (535)
+|.+.+|.||+.++.+ +..+-++.++|.+||++..+ .-..+++||+||+|+|.+|+++||++|++|+||||
T Consensus 35 sf~d~~a~f~~s~~~e---~~~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVyn 111 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSE---GNLGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYN 111 (348)
T ss_pred cccCCccccCCccccc---cceeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEec
Confidence 7899999999988866 46778999999999999763 45678999999999999999999999999999999
Q ss_pred CCCc--ccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCc
Q 009437 133 NKTE--LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNS 174 (535)
Q Consensus 133 ~~~~--l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~ 174 (535)
|.+. +..|.. ...++.|++++++...|+.|.+...++.
T Consensus 112 n~~~~~lv~~~~----~~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 112 NVGSEDLVAMAS----NPSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred CCCCchheeecc----CCccceeEEEEEeeehHHHHHHhhcccc
Confidence 8643 555532 2357999999999999999999654443
No 20
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.55 E-value=4e-15 Score=136.69 Aligned_cols=138 Identities=27% Similarity=0.363 Sum_probs=110.4
Q ss_pred CCCCeEEEEeeeeecCCCcceEEeeecC-CCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCCCHHH
Q 009437 39 CDNNFVLVKVPTWVDGGEDTEYVGVGAR-FGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGCSFTA 115 (535)
Q Consensus 39 c~n~f~lvkv~~wv~g~e~~~~~~~~A~-FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~~--~l~g~IaLV~RG~CsF~~ 115 (535)
-..++.+..+- .++....+|+..+|. ||...|++- ...+||.++|+.||+.+.| ...|.|+|++||+|+|..
T Consensus 28 ~~qD~~~F~vl--sP~~l~Yty~~~pAkdfG~~F~~r~---e~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~ 102 (193)
T KOG3920|consen 28 ENQDNMLFTVL--SPYTLAYTYQMKPAKDFGVHFPDRF---ENLELVLADPPHACEELRNEIFAPDSVALMERGECSFLV 102 (193)
T ss_pred eecceEEEEec--CcccEEEEEEecchhhhccccchhh---cCcceeecCChhHHHHHhhcccCCCcEEEEecCCceeee
Confidence 33344443332 456678889999998 999999874 3568999999999999885 678899999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCCCc------ccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEEecC
Q 009437 116 KANFAEEANASAILIINNKTE------LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSP 183 (535)
Q Consensus 116 Ka~nAq~aGA~avIV~N~~~~------l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l~~p 183 (535)
|.+++|++||.++||.++... .++|.. +++.++-+||++++-..+|-.++..|++-..+...+.-|
T Consensus 103 Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~--D~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 103 KTLNGEKAGATAIIITDSQNYEYSFHQYVEMIP--DESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred hhhhhhhcCceEEEEecCCCCchhHHHHHHhcC--cccccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 999999999999999987642 457875 345677899999999999999998888766655555444
No 21
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.51 E-value=2.7e-14 Score=122.68 Aligned_cols=91 Identities=29% Similarity=0.445 Sum_probs=65.5
Q ss_pred ceeEEEEecCC---CCCCCCC---CCCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcc
Q 009437 78 ASQNRLVLADP---PDCCSKP---KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDI 151 (535)
Q Consensus 78 ~~~~~Lv~~~p---~~gC~~~---~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i 151 (535)
..+++|+...+ ...|.+. ..+++|||+|++||+|+|.+|+++||++||+|+||+|+.+....+.. .....+.
T Consensus 5 ~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~--~~~~~~~ 82 (101)
T PF02225_consen 5 TVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMID--SEDPDPI 82 (101)
T ss_dssp EEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTC--EBTTTST
T ss_pred CEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCccc--ccCCCCc
Confidence 35778884432 2233322 26899999999999999999999999999999999993332222221 1224568
Q ss_pred cceEEEechhhhHhHHHHH
Q 009437 152 RIPAIMLPQDAGANLEKLI 170 (535)
Q Consensus 152 ~IPvv~Is~~~G~~L~~~L 170 (535)
.||+++|++++|++|++++
T Consensus 83 ~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 83 DIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp BSEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhhccC
Confidence 9999999999999999864
No 22
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.50 E-value=9.4e-14 Score=123.67 Aligned_cols=94 Identities=32% Similarity=0.490 Sum_probs=75.6
Q ss_pred cCCCCCCCCCC-----CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCc-ccccccCCCCCCCcccceEEEec
Q 009437 86 ADPPDCCSKPK-----NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE-LFKMVCESNETDVDIRIPAIMLP 159 (535)
Q Consensus 86 ~~p~~gC~~~~-----~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~-l~~M~~~~~~~~~~i~IPvv~Is 159 (535)
..+.++|++.. .+++|||+|++||+|+|.+|+++||++||+|+|++|+.+. ...+... .+...+..||+++|+
T Consensus 27 ~~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~-~~~~~~~~iP~~~is 105 (126)
T cd00538 27 AGPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSV-GLESTDPSIPTVGIS 105 (126)
T ss_pred ccceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccc-cCCCCCCcEeEEEeC
Confidence 35677887753 5799999999999999999999999999999999998763 2222221 111245689999999
Q ss_pred hhhhHhHHHHHhcCcEEEEEE
Q 009437 160 QDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 160 ~~~G~~L~~~L~~g~~V~V~l 180 (535)
+++|++|++++++|.++++++
T Consensus 106 ~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 106 YADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred HHHHHHHHHHHhcCCceEEeC
Confidence 999999999999999888753
No 23
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.39 E-value=4.2e-12 Score=117.26 Aligned_cols=94 Identities=21% Similarity=0.324 Sum_probs=72.0
Q ss_pred ceeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccceEE
Q 009437 78 ASQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAI 156 (535)
Q Consensus 78 ~~~~~Lv~~~p~~gC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv 156 (535)
..+++++.+.... .++.. .+++|||+|++||+|+|.+|+++||++||+|+|++|+.+....+... ....||++
T Consensus 25 ~~~~~lv~~g~g~-~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~-----~~~~iP~v 98 (143)
T cd02133 25 GKTYELVDAGLGT-PEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLG-----EAVFIPVV 98 (143)
T ss_pred CcEEEEEEccCCc-hhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCC-----CCCeEeEE
Confidence 4677888764221 12222 47999999999999999999999999999999999998665444321 13579999
Q ss_pred EechhhhHhHHHHHhcCcEEE
Q 009437 157 MLPQDAGANLEKLIKNNSVVS 177 (535)
Q Consensus 157 ~Is~~~G~~L~~~L~~g~~V~ 177 (535)
+|++++|++|++.+++..+++
T Consensus 99 ~Is~~dG~~L~~~l~~~~~i~ 119 (143)
T cd02133 99 FISKEDGEALKAALESSKKLT 119 (143)
T ss_pred EecHHHHHHHHHHHhCCCeEE
Confidence 999999999999998733333
No 24
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.36 E-value=6.7e-12 Score=113.89 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=75.5
Q ss_pred ceeEEEEecCCCCCCCCC-CCCCCCcEEEEecCCC--CHHHHHHHHHhcCCcEEEEEeCCCcccccccCC-CCCCCcccc
Q 009437 78 ASQNRLVLADPPDCCSKP-KNKLTGEAILVHRGGC--SFTAKANFAEEANASAILIINNKTELFKMVCES-NETDVDIRI 153 (535)
Q Consensus 78 ~~~~~Lv~~~p~~gC~~~-~~~l~g~IaLV~RG~C--sF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~-~~~~~~i~I 153 (535)
..+++++.+..... ++. ..+++|||||++||.| +|.+|+++|+++||+|+|++|+.+......... ..+.....|
T Consensus 22 ~~~~~lV~~g~G~~-~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~I 100 (127)
T cd04819 22 EAKGEPVDAGYGLP-KDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPI 100 (127)
T ss_pred CeeEEEEEeCCCCH-HHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCC
Confidence 35788888752110 111 2469999999999999 999999999999999999999876532211111 111234689
Q ss_pred eEEEechhhhHhHHHHHhcCcEEEEE
Q 009437 154 PAIMLPQDAGANLEKLIKNNSVVSVQ 179 (535)
Q Consensus 154 Pvv~Is~~~G~~L~~~L~~g~~V~V~ 179 (535)
|++.|+++||++|++++++|+++.+.
T Consensus 101 P~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 101 PAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred CEEEEeHHHHHHHHHHHhcCCceEee
Confidence 99999999999999999999887653
No 25
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.35 E-value=2.7e-12 Score=124.61 Aligned_cols=160 Identities=25% Similarity=0.391 Sum_probs=122.3
Q ss_pred HHHHHHhhhhhhcCCchhhHHhHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHhhhheeeecccccccceeEEeeccC
Q 009437 330 CIAFSVVWAVYRRISFAWIGQDILGIALMITVLQI--VRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGD 407 (535)
Q Consensus 330 ~~~~~~~w~~~~~~~~~W~~~nilgi~~~i~~i~~--i~l~s~k~~~ilL~~lf~YDif~VF~sp~~~~~svMv~VA~~~ 407 (535)
.++++.++.++++. .|+..|..|.+++..+-.. +++. ...+.+||..+-+||..-|+.|. +|++.|++.
T Consensus 97 ~~aI~~~~lL~~~p--eWyVid~ag~~la~Giaai~GIsfg-v~pavvlL~~lavYDaIsVYkT~------HMIslA~~v 167 (277)
T COG3389 97 GLAIGLVYLLYKYP--EWYVIDLAGFFLAVGIAAIFGISFG-VLPAVVLLIALAVYDAISVYKTR------HMISLAEGV 167 (277)
T ss_pred HHHHHHHHhhhhcc--ceEEeehHHHHHHhhHHHhheeecc-hHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHH
Confidence 34445555555432 5999999999999887665 5553 34588999999999999999654 899999996
Q ss_pred CCCCCCCCEEEEeccccC-----------CCCceeeccCccchhhHHHHHhhhhhhhcccccCCcchH--HHHHHHHHHH
Q 009437 408 RSGEDGIPMLLKIPRLFD-----------PWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYF--VWAMTAYGLG 474 (535)
Q Consensus 408 ~~~~~~~P~~l~~P~~~~-----------~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~~YF--~~~~~~Y~~G 474 (535)
. +.++||++++|...+ .+++--|+|+||+++|.+++.-+.-|-.+.. .+| +.++.|-.+|
T Consensus 168 ~--d~~lPmlfviP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~s~~-----l~f~~Lpal~GglvG 240 (277)
T COG3389 168 M--DLDLPMLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLISPI-----LAFIVLPALAGGLVG 240 (277)
T ss_pred H--hcCCceEEEeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhccCCc-----hhhhhHHHHhccHHH
Confidence 4 368999999996432 1466789999999999999999988855442 233 3368899999
Q ss_pred HHHHHHHHHhhcCCCcceehhhchhhhHhHHHHH
Q 009437 475 LLITYVALNLMDGHGQPALLYIVPFTLGTFLTLG 508 (535)
Q Consensus 475 L~~t~~~~~~~~~~~QPALLYlvP~~l~~~~~~a 508 (535)
+++-+. ++.+++||.|.|+.-.++...++-+
T Consensus 241 l~vL~~---v~r~Rp~pGLP~lN~GaIaGflig~ 271 (277)
T COG3389 241 LAVLYF---VNRGRPHPGLPFLNTGAIAGFLIGF 271 (277)
T ss_pred HHHHHH---HhcCCCCCCCceeccchHHHHHHHH
Confidence 988854 4458999999999988887766543
No 26
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.23 E-value=2.1e-11 Score=111.78 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=78.3
Q ss_pred cccCCceeEEEEecCCCCCCCCC-CCCCCCcEEEEecCCC------CHHHH-------HHHHHhcCCcEEEEEeCCCccc
Q 009437 73 AKEKDASQNRLVLADPPDCCSKP-KNKLTGEAILVHRGGC------SFTAK-------ANFAEEANASAILIINNKTELF 138 (535)
Q Consensus 73 ~~~~~~~~~~Lv~~~p~~gC~~~-~~~l~g~IaLV~RG~C------sF~~K-------a~nAq~aGA~avIV~N~~~~l~ 138 (535)
.+..++++++++.....+.=+.. ..+++|||||++||.| +|.+| .++|+++||.|+|++|+.+...
T Consensus 11 ~t~~~gvta~vv~v~~~~~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~ 90 (134)
T cd04815 11 ATPPEGITAEVVVVKSFDELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSH 90 (134)
T ss_pred CCCCCCcEEEEEEECCHHHHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccC
Confidence 33344578888876532211111 2479999999999999 99999 7999999999999999754321
Q ss_pred ccc--cCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 139 KMV--CESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 139 ~M~--~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
.+. +..........||++.|++++|+.|.+.+++|++|++++
T Consensus 91 ~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 91 RSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred CCCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 111 110111224679999999999999999999999998864
No 27
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.13 E-value=2e-10 Score=102.96 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=68.9
Q ss_pred CCCCCCCCC---CCCCCcEEEEecCCC-CHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhh
Q 009437 88 PPDCCSKPK---NKLTGEAILVHRGGC-SFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAG 163 (535)
Q Consensus 88 p~~gC~~~~---~~l~g~IaLV~RG~C-sF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G 163 (535)
....|++.. .+++|||+|++||+| +|.+|+++||++||.|+|++|+.++...+.. ....||++.|++++|
T Consensus 36 ~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~~~------~~~~iP~v~I~~~~g 109 (126)
T cd02120 36 DASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVA------DAHVLPAVHVDYEDG 109 (126)
T ss_pred ccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCceecc------cccccceEEECHHHH
Confidence 457898764 469999999999999 9999999999999999999998765433321 235799999999999
Q ss_pred HhHHHHHhcCcE
Q 009437 164 ANLEKLIKNNSV 175 (535)
Q Consensus 164 ~~L~~~L~~g~~ 175 (535)
+.|+++++++..
T Consensus 110 ~~l~~y~~~~~~ 121 (126)
T cd02120 110 TAILSYINSTSN 121 (126)
T ss_pred HHHHHHHHcCCC
Confidence 999999987654
No 28
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.81 E-value=1.4e-08 Score=97.71 Aligned_cols=92 Identities=25% Similarity=0.259 Sum_probs=67.3
Q ss_pred CceeEEEEecCCCCCCCCCC--------CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCccccc--------
Q 009437 77 DASQNRLVLADPPDCCSKPK--------NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKM-------- 140 (535)
Q Consensus 77 ~~~~~~Lv~~~p~~gC~~~~--------~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M-------- 140 (535)
+..+++++.++ .| ...+ .+++|||+|++||+|++.+|+++||++||+|+|+|||..+...+
T Consensus 27 G~v~g~lVyvn--~G-~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g 103 (183)
T cd02128 27 GTVTGKLVYAN--YG-RKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFG 103 (183)
T ss_pred CceEEEEEEcC--CC-CHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeec
Confidence 34688898884 22 2221 37899999999999999999999999999999999985321110
Q ss_pred -----cc-------C-CCC------C-CCcccceEEEechhhhHhHHHHHh
Q 009437 141 -----VC-------E-SNE------T-DVDIRIPAIMLPQDAGANLEKLIK 171 (535)
Q Consensus 141 -----~~-------~-~~~------~-~~~i~IPvv~Is~~~G~~L~~~L~ 171 (535)
.+ . .++ . ..-.+||+.=|+.++++.|++.|.
T Consensus 104 ~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~ 154 (183)
T cd02128 104 HVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMG 154 (183)
T ss_pred ceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcC
Confidence 00 0 000 0 012479999999999999999985
No 29
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.32 E-value=4.1e-06 Score=78.51 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=64.2
Q ss_pred ceeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCC------------------CCHHHHHHHHHhcCCcEEEEEeC
Q 009437 78 ASQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGG------------------CSFTAKANFAEEANASAILIINN 133 (535)
Q Consensus 78 ~~~~~Lv~~~---p~~gC~~~~---~~l~g~IaLV~RG~------------------CsF~~Ka~nAq~aGA~avIV~N~ 133 (535)
..++++|.+. ..+.|...+ .+++||||||.||+ |++..|+++|+++||+|+|+||+
T Consensus 19 ~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 19 AVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred CceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 3678898875 356786554 48999999999985 99999999999999999999998
Q ss_pred CCcccccccCCCCCCCcccceEEEechhhhHhHHHHH
Q 009437 134 KTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLI 170 (535)
Q Consensus 134 ~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L 170 (535)
.++... ..+.....+.. .++.++....+.+..++
T Consensus 99 ~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 132 (151)
T cd04822 99 PNSHSG--DADRLPRFGGT-APQRVDIAAADPWFTAA 132 (151)
T ss_pred CcccCc--ccccccccCcc-ceEEechHHHHHHhhhh
Confidence 754211 11000000111 27888888888877753
No 30
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.26 E-value=3e-06 Score=84.03 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=67.0
Q ss_pred ceeEEEEecCCCCCCCCC--------CCCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcc----------c-
Q 009437 78 ASQNRLVLADPPDCCSKP--------KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL----------F- 138 (535)
Q Consensus 78 ~~~~~Lv~~~p~~gC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l----------~- 138 (535)
..++++|.++ .|... ..+++|||||+++|.|.+.+|+++||++||+|+|+|++..+. +
T Consensus 44 ~v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP 120 (220)
T cd02121 44 NVTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYP 120 (220)
T ss_pred CceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCC
Confidence 3578888875 34332 247999999999999999999999999999999999985221 0
Q ss_pred ----------cc-------cc-CC---------C--------CCCCcccceEEEechhhhHhHHHHHhc
Q 009437 139 ----------KM-------VC-ES---------N--------ETDVDIRIPAIMLPQDAGANLEKLIKN 172 (535)
Q Consensus 139 ----------~M-------~~-~~---------~--------~~~~~i~IPvv~Is~~~G~~L~~~L~~ 172 (535)
+. .+ ++ + +...-.+||+.=|+..+++.|++.|..
T Consensus 121 ~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g 189 (220)
T cd02121 121 DGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGG 189 (220)
T ss_pred CCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCC
Confidence 00 00 00 0 000124799999999999999999973
No 31
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.21 E-value=4e-06 Score=77.81 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=48.3
Q ss_pred eeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCCC------------------CHHHHHHHHHhcCCcEEEEEeCC
Q 009437 79 SQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGGC------------------SFTAKANFAEEANASAILIINNK 134 (535)
Q Consensus 79 ~~~~Lv~~~---p~~gC~~~~---~~l~g~IaLV~RG~C------------------sF~~Ka~nAq~aGA~avIV~N~~ 134 (535)
..+++|.+. ...+|...+ .+++||||||.||+| +|..|+++|+++||+|+|++|+.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 567888774 345777554 489999999999999 79999999999999999999986
Q ss_pred C
Q 009437 135 T 135 (535)
Q Consensus 135 ~ 135 (535)
+
T Consensus 100 ~ 100 (142)
T cd04814 100 A 100 (142)
T ss_pred C
Confidence 5
No 32
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.16 E-value=5.7e-06 Score=76.37 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=49.2
Q ss_pred ceeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCCCC------------HHHHHHHHHhcCCcEEEEEeCCCc
Q 009437 78 ASQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGGCS------------FTAKANFAEEANASAILIINNKTE 136 (535)
Q Consensus 78 ~~~~~Lv~~~---p~~gC~~~~---~~l~g~IaLV~RG~Cs------------F~~Ka~nAq~aGA~avIV~N~~~~ 136 (535)
..++++|.+. ..++|...+ .+++|||||++||+|. +.+|.++|+++||+|+|++|+.+.
T Consensus 21 ~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 21 SVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred CceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4678888775 356777544 5899999999999995 889999999999999999998653
No 33
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.64 E-value=5.4e-05 Score=70.70 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=44.1
Q ss_pred ceeEEEEecCCC---C--CCCCCCCCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCC
Q 009437 78 ASQNRLVLADPP---D--CCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKT 135 (535)
Q Consensus 78 ~~~~~Lv~~~p~---~--gC~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~ 135 (535)
..++++|.++-. | -=.. .-+++|||+|++.|......|++|||++||.|+|||.|..
T Consensus 14 ~Vtg~~VYvNyG~~eDf~~L~~-~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 14 TLQAEVVDVQYGSVEDLRRIRD-NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred ceEEEEEEecCCCHHHHHHHHh-CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 456777776511 0 0001 1479999999999999999999999999999999999863
No 34
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.21 E-value=0.06 Score=51.00 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=40.7
Q ss_pred eeEEEEecC-----CCCCCCCCC-CCCCCcEEEEecCCCCH-------------------HHHHHHHHhcCCcEEEEEeC
Q 009437 79 SQNRLVLAD-----PPDCCSKPK-NKLTGEAILVHRGGCSF-------------------TAKANFAEEANASAILIINN 133 (535)
Q Consensus 79 ~~~~Lv~~~-----p~~gC~~~~-~~l~g~IaLV~RG~CsF-------------------~~Ka~nAq~aGA~avIV~N~ 133 (535)
..++||.+. |..+=++.. .+++||||++.+|+=.| ..|.+.|+++||+|+|++++
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 345676653 222223332 58999999999886543 35999999999999999987
Q ss_pred CC
Q 009437 134 KT 135 (535)
Q Consensus 134 ~~ 135 (535)
..
T Consensus 102 ~~ 103 (157)
T cd04821 102 TE 103 (157)
T ss_pred CC
Confidence 53
No 35
>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.
Probab=93.15 E-value=0.14 Score=55.18 Aligned_cols=64 Identities=30% Similarity=0.510 Sum_probs=46.3
Q ss_pred eeccCccchhhHHHHHhhhhh-hhcccccCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCcceehhhchhhhHhHH
Q 009437 431 SVIGFGDIILPGLIVAFSLRY-DWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFL 505 (535)
Q Consensus 431 s~LGlGDIviPGl~i~~~~rf-D~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALLYlvP~~l~~~~ 505 (535)
--|||||.|+=+++++-+.++ |.. -...+++|-.+||.+|.+.+.++ +++-|||.- +.++|.++
T Consensus 326 ~klGlGDFiFYs~Lvg~aa~~~~~~--------~~~~~~~ail~Gl~~Tl~~l~~~-~~alPALPi--si~~g~~~ 390 (403)
T PF01080_consen 326 IKLGLGDFIFYSVLVGRAAMYGDWN--------TVVACFVAILIGLCLTLLLLAIF-RKALPALPI--SIALGLIF 390 (403)
T ss_dssp -SS-TTTHHHHHHHHHHHHHH-TTT--------THHHHHHHHHHHHHHHHHHHHHH-T-S-SSSSS------HHHH
T ss_pred eeecchhHHHHHHHHhHHHhcCCHH--------HHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcH--HHHHHHHH
Confidence 359999999999999998876 442 24678999999999999999998 899999963 44444443
No 36
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=91.64 E-value=0.16 Score=53.83 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=53.6
Q ss_pred eeccCccchhhHHHHHhhhhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCcceehhhchhhhHhHHHHH
Q 009437 431 SVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLG 508 (535)
Q Consensus 431 s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALLYlvP~~l~~~~~~a 508 (535)
--|||||.|+=.+++.-+.-||... =-++|++|-.+||.+|...+.++ +++-|||.. |.++|.+.-.+
T Consensus 320 ikLGlGDFIFYSvLvGkAa~~~d~~-------TviAC~vaIL~GL~~TL~llsv~-~kALPALPi--sI~~G~iFYF~ 387 (406)
T KOG2736|consen 320 IKLGLGDFIFYSVLVGKAAAYGDLN-------TVIACFVAILIGLCLTLLLLSVF-KKALPALPI--SITFGLIFYFS 387 (406)
T ss_pred eeeccCceEEEEeeccchhhcCChH-------HHHHHHHHHHHHHHHHHHHHHHH-hhcCcCCch--HHHHHHHHHHH
Confidence 4699999999888888777776211 13579999999999999999999 899999974 66777665544
No 37
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=67.11 E-value=6.2 Score=45.85 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=48.9
Q ss_pred eeecCCCCccccccCCceeEEEEecCCCCCC-----CCCCCCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCC
Q 009437 62 GVGARFGRTLEAKEKDASQNRLVLADPPDCC-----SKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKT 135 (535)
Q Consensus 62 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC-----~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~ 135 (535)
....+|+...|.. ..++.+|.++-...= ++..-+++|+|+|++-|.-.+.+|++||+++||.|+++|.+..
T Consensus 144 ~~~~~~~~~s~~g---~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~ 219 (702)
T KOG2195|consen 144 DIVEPFRAYSPSG---SVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPY 219 (702)
T ss_pred cccCchhccCcCC---CccceEEEEecCchhhhhHhhcCcccccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccc
Confidence 3444455443332 345667665421111 1222468899999999999999999999999999999999753
No 38
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.84 E-value=11 Score=40.06 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=19.9
Q ss_pred hhHHHHHHhhhhhhcCCchhhHHhHHH
Q 009437 328 PFCIAFSVVWAVYRRISFAWIGQDILG 354 (535)
Q Consensus 328 ~~~~~~~~~w~~~~~~~~~W~~~nilg 354 (535)
+=+++|++.|++++--.--|++-|++.
T Consensus 238 vRlILF~I~~il~~g~~g~W~FPNL~e 264 (372)
T KOG2927|consen 238 VRLILFGITWILTGGKHGFWLFPNLTE 264 (372)
T ss_pred HHHHHHHHHHHHhCCCCceEeccchhh
Confidence 446778899999983333699888865
No 39
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=46.27 E-value=1e+02 Score=33.38 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=68.1
Q ss_pred ccccccCCceeEEEEecCCCCCCCCCCCCCCCcEEEEecCCCCHHHHH--HHHHhcCCcEEEEEeCCCcccccccCCCC-
Q 009437 70 TLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKA--NFAEEANASAILIINNKTELFKMVCESNE- 146 (535)
Q Consensus 70 ~lp~~~~~~~~~~Lv~~~p~~gC~~~~~~l~g~IaLV~RG~CsF~~Ka--~nAq~aGA~avIV~N~~~~l~~M~~~~~~- 146 (535)
..|+.......++++... .+..|++++-+|-+--...|. ..|.++||.|+|+-.+++.-+.- +++..
T Consensus 68 ~~PYsls~~IEgr~v~~~---------gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~-~Gd~gy 137 (486)
T COG4882 68 VGPYSLSGDIEGRPVVLE---------GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVT-GGDWGY 137 (486)
T ss_pred ccccccccccccceeccc---------CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEe-cccccc
Confidence 445554444445544432 267789888888766666665 46778999999988876542111 11111
Q ss_pred --CCCcccceEEEechhhhHhHHHHHhcCcEEEEEEecCCCCccchh
Q 009437 147 --TDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVA 191 (535)
Q Consensus 147 --~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l~~p~~p~vD~s 191 (535)
......||+..++..++..... ...+++..+.-++...|++
T Consensus 138 ~~~s~PtPIPva~v~en~~~y~~~----~~rvrl~vD~~~~~ty~y~ 180 (486)
T COG4882 138 SVSSSPTPIPVAVVPENYSRYAEE----AGRVRLWVDACVERTYDYN 180 (486)
T ss_pred cCCCCCCCcceEEeccCcchhhcc----ceeEEEEEecccceeEEEE
Confidence 1234689999999999887753 3467777776665556654
No 40
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=37.42 E-value=1e+02 Score=28.45 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=48.5
Q ss_pred CCCCCcEEEEe--cCCCCHHHHHHHHHhcC-CcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHHhcC
Q 009437 97 NKLTGEAILVH--RGGCSFTAKANFAEEAN-ASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNN 173 (535)
Q Consensus 97 ~~l~g~IaLV~--RG~CsF~~Ka~nAq~aG-A~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g 173 (535)
.+++|+|.+.. ||.|.=.-=...+.+.| |-+.||.-+.+......+- --.||.+-... +..+.++.|
T Consensus 47 ~~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv~~e~EpIla~Gai------~a~iPlv~~~~----e~~~~l~~g 116 (131)
T COG1786 47 ESLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIVNEEAEPILAVGAI------LAGIPLVDGVD----EFFEELKTG 116 (131)
T ss_pred ccccceEEEeeCCCCccccHHHHHHHHHcCCCchhhhhcCCcceeeehhh------hcCCceEeccH----HHHHHhccC
Confidence 47999999997 78898888888888888 5555555444433332221 12678765554 466677788
Q ss_pred cEEEEE
Q 009437 174 SVVSVQ 179 (535)
Q Consensus 174 ~~V~V~ 179 (535)
..|++.
T Consensus 117 ~~v~v~ 122 (131)
T COG1786 117 DRVRVN 122 (131)
T ss_pred CEEEEc
Confidence 877764
No 41
>PRK11588 hypothetical protein; Provisional
Probab=31.23 E-value=4.7e+02 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.406 Sum_probs=26.4
Q ss_pred eeeCccchhhhhHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhH
Q 009437 244 VDINMASAVSFVVIASCFLVMLYKLMS-FWFIEVLVVLFCIGGV 286 (535)
Q Consensus 244 ~~i~~~~a~~f~v~as~~L~~Ly~f~~-~~~~~~l~~~f~i~g~ 286 (535)
.++|.++-+...++...+..+.|=..+ .|...=+..+|.+.|+
T Consensus 280 ~~~t~r~klvL~~f~~~~~~~i~Gv~~~gW~~~Eia~~Fl~~gi 323 (506)
T PRK11588 280 RPFTFGDWLVLLVLTAVMVWVIWGVVVNAWFIPEIASQFFTMGL 323 (506)
T ss_pred cCcChhhHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 478999988877777777777774432 3433334455555443
No 42
>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.
Probab=27.69 E-value=20 Score=39.05 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=0.0
Q ss_pred cCchhhHHHHHHHHHHhhhheeee
Q 009437 367 VPNLKVGTVLLSCAFLYDIFWVFV 390 (535)
Q Consensus 367 l~s~k~~~ilL~~lf~YDif~VF~ 390 (535)
+|. .+.-.+|+++-+||+|-|-.
T Consensus 172 lPe-WTtW~lL~~iaiyDl~AVL~ 194 (403)
T PF01080_consen 172 LPE-WTTWFLLVAIAIYDLFAVLC 194 (403)
T ss_dssp ------------------------
T ss_pred CCc-hHHHHHHHHHHHHHHeeEeC
Confidence 777 45778899999999999983
No 43
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.05 E-value=2.4e+02 Score=22.09 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=22.2
Q ss_pred hcCcEEEEEEecCCCCccchhHHHHH--HHHHHHHHHHHHHhhhhhHHHHH
Q 009437 171 KNNSVVSVQLYSPRRPVVDVAEVFLW--LMAVGTILCASYWSAWTARETAI 219 (535)
Q Consensus 171 ~~g~~V~V~l~~p~~p~vD~s~~~L~--lmAv~tV~~gs~ws~~~~~~~~~ 219 (535)
++...|++.+..-..+ .-.+.+.+. ++++...++.+++..++.+.+.+
T Consensus 2 qN~~~V~v~~~~~~~~-~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~ 51 (68)
T PF06305_consen 2 QNTQPVTVNFLFGQFP-LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIR 51 (68)
T ss_pred CCCceEEEEEEeeecc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788887644433 333333333 33333334444444444443333
No 44
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=25.30 E-value=9.2e+02 Score=26.37 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHhhhheee
Q 009437 372 VGTVLLSCAFLYDIFWVF 389 (535)
Q Consensus 372 ~~~ilL~~lf~YDif~VF 389 (535)
+.=..|...-+||++-|.
T Consensus 182 TtW~iL~ais~~DLvAVL 199 (406)
T KOG2736|consen 182 TTWFILVAISVYDLVAVL 199 (406)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 466678888899999997
No 45
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=22.91 E-value=2.2e+02 Score=31.58 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=10.1
Q ss_pred ccCccchhhH--HHHHh
Q 009437 433 IGFGDIILPG--LIVAF 447 (535)
Q Consensus 433 LGlGDIviPG--l~i~~ 447 (535)
=|+|+.+-|- .+++.
T Consensus 414 ~gl~n~isPtsg~~m~~ 430 (465)
T PF03606_consen 414 DGLGNSISPTSGVLMAV 430 (465)
T ss_pred HHHHhhccchHHHHHHH
Confidence 3788888884 44443
No 46
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=31 Score=36.16 Aligned_cols=33 Identities=6% Similarity=-0.004 Sum_probs=29.2
Q ss_pred EEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCc
Q 009437 104 ILVHRGGCSFTAKANFAEEANASAILIINNKTE 136 (535)
Q Consensus 104 aLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~ 136 (535)
.+++||+|+..+|.+-+|+-|-+|+|.-++.+.
T Consensus 150 ~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~ 182 (374)
T COG5540 150 RCNRRGNETEEDPTRERRRTRFKGVIRGSERNG 182 (374)
T ss_pred HHHHccCccccCccccchhccccceeeccccCC
Confidence 356799999999999999999999999988653
No 47
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=22.16 E-value=6.6e+02 Score=23.53 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHhcccCchhhHHHHHHHHHHhhhhe
Q 009437 362 LQIVRVPNLKVGTVLLSCAFLYDIFW 387 (535)
Q Consensus 362 i~~i~l~s~k~~~ilL~~lf~YDif~ 387 (535)
++.+.-...+..++++..+++.|...
T Consensus 129 ~~~i~~~~~~~~~~~l~~~~~~D~~~ 154 (157)
T PF06541_consen 129 LSKIPPIIRNILALVLLALFLIDFVF 154 (157)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677888889999999764
No 48
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=21.97 E-value=1.2e+03 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=23.8
Q ss_pred HHHHHHHHH---HHhcccCchhhHHHHHHHHHHhhhheeeec
Q 009437 353 LGIALMITV---LQIVRVPNLKVGTVLLSCAFLYDIFWVFVS 391 (535)
Q Consensus 353 lgi~~~i~~---i~~i~l~s~k~~~ilL~~lf~YDif~VF~s 391 (535)
+|..+++.. +|.+.++.+-....+....-+.|.|-.-.|
T Consensus 360 lg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~S 401 (502)
T PF03806_consen 360 LGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSAS 401 (502)
T ss_pred hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcch
Confidence 566677664 556777766655555555566677654433
No 49
>PRK03427 cell division protein ZipA; Provisional
Probab=21.63 E-value=75 Score=33.86 Aligned_cols=25 Identities=16% Similarity=0.450 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH
Q 009437 192 EVFLWLMAVGTILCASYWSAWTARE 216 (535)
Q Consensus 192 ~~~L~lmAv~tV~~gs~ws~~~~~~ 216 (535)
++++..||++.+++-+||+.+++|.
T Consensus 9 LivvGAIAIiAlL~HGlWtsRKers 33 (333)
T PRK03427 9 LIIVGAIAIIALLVHGFWTSRKERS 33 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccc
Confidence 4456678889999999999876663
No 50
>PRK03955 hypothetical protein; Reviewed
Probab=21.59 E-value=3.1e+02 Score=25.39 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=45.4
Q ss_pred CCCCCcEEEEe--cCCCCHHHHHHHHHhcC-CcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHHhcC
Q 009437 97 NKLTGEAILVH--RGGCSFTAKANFAEEAN-ASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNN 173 (535)
Q Consensus 97 ~~l~g~IaLV~--RG~CsF~~Ka~nAq~aG-A~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g 173 (535)
.+++|||.+.. ||.|.=.--...+...| |-+.||..+.+......+- --.||++.- .. .+.++.|
T Consensus 47 ~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~~~~~ils~GaI------vAgIP~V~~-----~~-~~~l~~G 114 (131)
T PRK03955 47 ESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINLEAEPIVATGAI------ISGIPLVDK-----VD-ISKLKDG 114 (131)
T ss_pred CccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEecCCceeEeeee------ecCCceEcc-----cc-ceecCCC
Confidence 46899999987 78897655555555544 4466666665544333221 126888762 22 5578889
Q ss_pred cEEEEE
Q 009437 174 SVVSVQ 179 (535)
Q Consensus 174 ~~V~V~ 179 (535)
..|+|.
T Consensus 115 ~~V~Vd 120 (131)
T PRK03955 115 DRVVVD 120 (131)
T ss_pred CEEEEe
Confidence 988875
No 51
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=20.76 E-value=2.3e+02 Score=28.53 Aligned_cols=11 Identities=27% Similarity=0.999 Sum_probs=7.0
Q ss_pred HHHHHhhhhhh
Q 009437 331 IAFSVVWAVYR 341 (535)
Q Consensus 331 ~~~~~~w~~~~ 341 (535)
+++++.|++||
T Consensus 237 ~~Ia~aW~~yR 247 (248)
T PF07787_consen 237 LTIALAWLFYR 247 (248)
T ss_pred HHHHHhheeeC
Confidence 34456787776
No 52
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=20.36 E-value=2.7e+02 Score=26.47 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=44.1
Q ss_pred HHHHhhhhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCcceehhhchhhhHhHHHHHhhcchhhhh
Q 009437 443 LIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTL 517 (535)
Q Consensus 443 l~i~~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALLYlvP~~l~~~~~~a~~rgel~~l 517 (535)
++.-+.+|+.+...++ ++++..-..-+.++++++......+ + .++...|++|....+.++......++.-+
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~l~l~~~l~~l~l~l~~~~~~~~-~-~~~~~~~~~P~a~~~~l~~~l~~~~~ai~ 87 (194)
T PF07698_consen 17 ILYLYLRRFRPRILRS--NKYLLLLSLLLLLSLLLAKIILFFI-S-DISYFPYLIPVAAAAMLLTILIDPRLAIL 87 (194)
T ss_pred HHHHHHHHHCcHhhhc--hhHHHHHHHHHHHHHHHHHHHHHhc-c-cchhhhhhhHHHHHHHHHHHHhcchHHHH
Confidence 3344556663332222 3444444566777777776654333 2 57888999999999988887777666543
Done!