Query 009437
Match_columns 535
No_of_seqs 367 out of 1545
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:10:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 99.9 2.3E-26 7.8E-31 228.5 10.2 174 327-515 108-297 (301)
2 3icu_A E3 ubiquitin-protein li 99.9 2.9E-21 9.8E-26 185.4 15.4 132 50-189 40-194 (194)
3 3iib_A Peptidase M28; YP_92679 99.0 1.2E-09 3.9E-14 117.1 11.7 145 35-182 56-225 (444)
4 2ek8_A Aminopeptidase; metallo 98.9 8.4E-09 2.9E-13 109.4 14.3 90 77-170 91-181 (421)
5 3fed_A Glutamate carboxypeptid 98.5 1.5E-07 5.2E-12 106.1 9.8 95 75-171 123-267 (707)
6 3kas_A Transferrin receptor pr 98.4 2.6E-07 9E-12 103.1 8.3 93 77-171 106-230 (640)
7 3i6s_A Subtilisin-like proteas 98.3 1.2E-06 4.2E-11 98.0 8.2 93 79-180 257-354 (649)
8 1xf1_A C5A peptidase, SCP; hyd 98.0 2E-05 6.8E-10 91.6 11.6 92 79-181 260-352 (926)
9 1y9z_A Alkaline serine proteas 97.9 1.6E-05 5.4E-10 84.7 8.9 87 90-180 258-356 (441)
10 2kr6_A Presenilin-1; protease, 96.5 0.0031 1.1E-07 58.6 5.5 65 431-506 88-155 (176)
11 3vta_A Cucumisin; subtilisin-l 90.8 0.26 8.8E-06 54.6 6.1 72 90-174 268-342 (621)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.93 E-value=2.3e-26 Score=228.50 Aligned_cols=174 Identities=26% Similarity=0.301 Sum_probs=122.8
Q ss_pred hhhHHHHHHhhhhhhcCCchhhHHhHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHhhhheeeecccccccceeEEee
Q 009437 327 CPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQI--VRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVA 404 (535)
Q Consensus 327 ~~~~~~~~~~w~~~~~~~~~W~~~nilgi~~~i~~i~~--i~l~s~k~~~ilL~~lf~YDif~VF~sp~~~~~svMv~VA 404 (535)
.+.++++++.++.|. +|+..|+.|++++..+... +++..+ .+.+||+++++||++|||+|+ +|+++|
T Consensus 108 ~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtLA 176 (301)
T 4hyg_A 108 LIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITLA 176 (301)
T ss_dssp HHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHT
T ss_pred HHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHHH
Confidence 344566666555555 4999999999999998876 455777 899999999999999999776 999999
Q ss_pred ccCCCCCCCCCEEEEeccccC-------------CCCceeeccCccchhhHHHHHhhhhhhhcccc-cCCcchHHHHHHH
Q 009437 405 RGDRSGEDGIPMLLKIPRLFD-------------PWGGYSVIGFGDIILPGLIVAFSLRYDWLMKK-NFRSGYFVWAMTA 470 (535)
Q Consensus 405 ~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~-~~~~~YF~~~~~~ 470 (535)
+|.- +.++|+++++|+-.+ .+++..++|+||+++|+++++.+.+||.+... .+.+--++.+++|
T Consensus 177 egvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lPalgA~~G 254 (301)
T 4hyg_A 177 EGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAPTLGAMVG 254 (301)
T ss_dssp TTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCSCHHHHHH
T ss_pred Hhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccchHHHHHHH
Confidence 9954 257999999998421 14678899999999999999999999965431 1111238999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcceehhhchhhhHhHHHHHhhcchhh
Q 009437 471 YGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELK 515 (535)
Q Consensus 471 Y~~GL~~t~~~~~~~~~~~QPALLYlvP~~l~~~~~~a~~rgel~ 515 (535)
|.+||.++... ++++++||.|.||.+.++++.++.++.+||+.
T Consensus 255 t~~Gl~vLl~~--V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 255 SLVGLAVLLYF--VNKGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp HHHHHHHHHHH--HTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHH--HHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 99999999663 34599999999999999999999999999987
No 2
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=185.36 Aligned_cols=132 Identities=23% Similarity=0.335 Sum_probs=105.7
Q ss_pred eeec--C--CCcceEEeeecCCCCccccccCCceeEEEEecC---CCCCCCCCCC---C-------CCCcEEEEecCC-C
Q 009437 50 TWVD--G--GEDTEYVGVGARFGRTLEAKEKDASQNRLVLAD---PPDCCSKPKN---K-------LTGEAILVHRGG-C 111 (535)
Q Consensus 50 ~wv~--g--~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~~gC~~~~~---~-------l~g~IaLV~RG~-C 111 (535)
+|.| + +...++.+.+|+||..+|.+ +.++.++.+. +.+||++.+. . .+||||||+||+ |
T Consensus 40 sy~d~~~~~n~t~~~~~e~a~FG~~~p~~---~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~C 116 (194)
T 3icu_A 40 SWRVPHTGVNRTVWELSEEGVYGQDSPLE---PVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGC 116 (194)
T ss_dssp EEECCSSCTTCEEEEEEEEEEECTTSCCS---CEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTC
T ss_pred EEECCCCCccceeeecccccccCCCCCCC---CcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCc
Confidence 5554 3 45556889999999998875 4788888764 7899999762 1 468999999999 9
Q ss_pred CHHHHHHHHHhcCCcEEEEEeCCC---cccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEEEEecC--CCC
Q 009437 112 SFTAKANFAEEANASAILIINNKT---ELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSP--RRP 186 (535)
Q Consensus 112 sF~~Ka~nAq~aGA~avIV~N~~~---~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V~l~~p--~~p 186 (535)
+|.+|++|||++||+|+|||||++ ....|... ...+||++||++++|+.|+++|++|.+|++++... +.|
T Consensus 117 sF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~~h~p 191 (194)
T 3icu_A 117 TFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGP 191 (194)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCCccCC
Confidence 999999999999999999999852 35667542 13579999999999999999999999998887543 345
Q ss_pred ccc
Q 009437 187 VVD 189 (535)
Q Consensus 187 ~vD 189 (535)
|++
T Consensus 192 w~~ 194 (194)
T 3icu_A 192 WVN 194 (194)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 3
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.00 E-value=1.2e-09 Score=117.08 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=96.3
Q ss_pred CCCCCC-CCeEEEEeeeeecCCCcceE--------EeeecCCCCccccccCCceeEEEEecCCCCCCCCCC-CCCCCcEE
Q 009437 35 KRPGCD-NNFVLVKVPTWVDGGEDTEY--------VGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK-NKLTGEAI 104 (535)
Q Consensus 35 ~~p~c~-n~f~lvkv~~wv~g~e~~~~--------~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~-~~l~g~Ia 104 (535)
+..|.+ ...+-+.+..|..|.+..+. ......+.+ .+..++++++|+.++..++|+... .+++||||
T Consensus 56 ~~~G~~~v~~q~f~~~~w~~~~~~~~~~~~~~~~~~~~~l~~s~---~tp~~~vta~lV~v~~~~~~~~~~~~dvkGKIV 132 (444)
T 3iib_A 56 QSLGFDRVYKEPVTVPVWRRGIAKASILSPFPQPLVVTALGGSI---ATPAQGLSATIVRFDTLQDLQNAEAGSLNDKIA 132 (444)
T ss_dssp HHTTCSEEEEEEEEEEEEEEEEEEEEEEESSCEEECEEECBTCC---CCCTTCEEEEEEEESSHHHHHTSCTTTTTTCEE
T ss_pred HHcCCCceEeeeEEeccEEecceEEEEeCCCCceEEEEeccCCC---CCCCCCeEEEEEecCCHHHHhhccccccCccEE
Confidence 344553 23344556678755433222 222222332 223457899999987666676553 58999999
Q ss_pred EEecCCCC---------HHHH----HHHHHhcCCcEEEEEeCCCcccccccCC--CCCCCcccceEEEechhhhHhHHHH
Q 009437 105 LVHRGGCS---------FTAK----ANFAEEANASAILIINNKTELFKMVCES--NETDVDIRIPAIMLPQDAGANLEKL 169 (535)
Q Consensus 105 LV~RG~Cs---------F~~K----a~nAq~aGA~avIV~N~~~~l~~M~~~~--~~~~~~i~IPvv~Is~~~G~~L~~~ 169 (535)
||+||.|. |..| +.+|+++||+|+|++|+.+....+.+.+ ........||++.|++++|+.|++.
T Consensus 133 lv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~ 212 (444)
T 3iib_A 133 FIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAM 212 (444)
T ss_dssp EECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHH
T ss_pred EEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHH
Confidence 99999995 6777 4679999999999999864322221110 0112346899999999999999999
Q ss_pred HhcCcEEEEEEec
Q 009437 170 IKNNSVVSVQLYS 182 (535)
Q Consensus 170 L~~g~~V~V~l~~ 182 (535)
+++|+++++++..
T Consensus 213 l~~g~~~~v~l~~ 225 (444)
T 3iib_A 213 LKRDKEVVISLEL 225 (444)
T ss_dssp HTTTCCCEEEEEE
T ss_pred HhCCCCeEEEEEE
Confidence 9988766666543
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.92 E-value=8.4e-09 Score=109.38 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=69.2
Q ss_pred CceeEEEEecCCCCCCCCCCC-CCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccceE
Q 009437 77 DASQNRLVLADPPDCCSKPKN-KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPA 155 (535)
Q Consensus 77 ~~~~~~Lv~~~p~~gC~~~~~-~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPv 155 (535)
+..+++++.+... ..++.+. +++|||||++||+|+|.+|+++|+++||+|+||||+.+......- .......||+
T Consensus 91 g~v~a~lv~~~~G-~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~---~~~~~~~IP~ 166 (421)
T 2ek8_A 91 SDVTAELVYVGLG-TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTL---GGSDASFVAA 166 (421)
T ss_dssp EEEEEEEEECTTC-CTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBC---SSCCTTCCEE
T ss_pred CCcceEEEECCCC-ChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCccccccc---CCCCCCCccE
Confidence 3577888876533 2233333 899999999999999999999999999999999998643222110 1113568999
Q ss_pred EEechhhhHhHHHHH
Q 009437 156 IMLPQDAGANLEKLI 170 (535)
Q Consensus 156 v~Is~~~G~~L~~~L 170 (535)
+.|++++++.|++.+
T Consensus 167 ~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 167 VGITKQEGDALAANL 181 (421)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHh
Confidence 999999999999998
No 5
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.54 E-value=1.5e-07 Score=106.08 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=69.2
Q ss_pred cCCceeEEEEecCCCCCCCCC--------CCCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcc-------c-
Q 009437 75 EKDASQNRLVLADPPDCCSKP--------KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL-------F- 138 (535)
Q Consensus 75 ~~~~~~~~Lv~~~p~~gC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l-------~- 138 (535)
..+..++++|.++ .||... ..+++|||||++||+|+|.+|+++||++||+|+||||+..+. +
T Consensus 123 ~~G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP 200 (707)
T 3fed_A 123 AQGMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYP 200 (707)
T ss_dssp CCBCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTT
T ss_pred CCCceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCC
Confidence 3445788999885 466321 236999999999999999999999999999999999973210 0
Q ss_pred ----------c------cccCCC-CC-----------------CCcccceEEEechhhhHhHHHHHh
Q 009437 139 ----------K------MVCESN-ET-----------------DVDIRIPAIMLPQDAGANLEKLIK 171 (535)
Q Consensus 139 ----------~------M~~~~~-~~-----------------~~~i~IPvv~Is~~~G~~L~~~L~ 171 (535)
. +.+.++ .+ .....||++-|++++|+.|++.+.
T Consensus 201 ~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~ 267 (707)
T 3fed_A 201 KGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLG 267 (707)
T ss_dssp TSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBC
T ss_pred CCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhc
Confidence 0 000000 00 013589999999999999999885
No 6
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.44 E-value=2.6e-07 Score=103.11 Aligned_cols=93 Identities=22% Similarity=0.266 Sum_probs=67.3
Q ss_pred CceeEEEEecCCCCCCCCC-C---CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcc-c-----------cc
Q 009437 77 DASQNRLVLADPPDCCSKP-K---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL-F-----------KM 140 (535)
Q Consensus 77 ~~~~~~Lv~~~p~~gC~~~-~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l-~-----------~M 140 (535)
+..++++|.+. .||... + .+++|||||++||+|+|.+|+++|+++||+|+||||+..+. . ..
T Consensus 106 g~v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~ 183 (640)
T 3kas_A 106 ATVTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHL 183 (640)
T ss_dssp EEEEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCS
T ss_pred CceEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEecccccccccccccccccccc
Confidence 34678888874 455321 1 27999999999999999999999999999999999986421 0 00
Q ss_pred ccCCCC----------------CCCcccceEEEechhhhHhHHHHHh
Q 009437 141 VCESNE----------------TDVDIRIPAIMLPQDAGANLEKLIK 171 (535)
Q Consensus 141 ~~~~~~----------------~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (535)
..++.. ......||++-|++++|+.|++.+.
T Consensus 184 ~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 184 GTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 000000 0113479999999999999998764
No 7
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.26 E-value=1.2e-06 Score=98.00 Aligned_cols=93 Identities=11% Similarity=0.190 Sum_probs=76.6
Q ss_pred eeEEEEecCCCCCCCCCC---CCC--CCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccc
Q 009437 79 SQNRLVLADPPDCCSKPK---NKL--TGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRI 153 (535)
Q Consensus 79 ~~~~Lv~~~p~~gC~~~~---~~l--~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~I 153 (535)
...+++.+...+.|.+.. ..+ +|||+|++||.|.+.+|..+++++||.++|++|+.++. . .....+
T Consensus 257 ~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~------~~~~~~ 327 (649)
T 3i6s_A 257 RDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVF---R------SATFPN 327 (649)
T ss_dssp EEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGGG---G------CCCCCS
T ss_pred cceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcccc---c------cccCcC
Confidence 467888887888998753 344 99999999999999999999999999999999987322 1 123578
Q ss_pred eEEEechhhhHhHHHHHhcCcEEEEEE
Q 009437 154 PAIMLPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 154 Pvv~Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
|+++|++++|++|++++++++..++++
T Consensus 328 P~~~v~~~~g~~i~~yi~s~~~~~a~i 354 (649)
T 3i6s_A 328 PGVVVNKKEGKQVINYVKNSVTPTATI 354 (649)
T ss_dssp CEEEECHHHHHHHHHHHHTCSSCEEEE
T ss_pred CEEEEcHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999876555554
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=98.00 E-value=2e-05 Score=91.56 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=69.7
Q ss_pred eeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccceEEE
Q 009437 79 SQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIM 157 (535)
Q Consensus 79 ~~~~Lv~~~p~~gC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~ 157 (535)
...+++.+. ++|.+.. .+++|||+|++||.|+|.+|+.+++++||.++|++|+......+.. .....+|+++
T Consensus 260 ~~~~lv~~~--~g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~-----~~~~~iP~~~ 332 (926)
T 1xf1_A 260 KAYDYAYAN--RGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL-----PNVDQMPAAF 332 (926)
T ss_dssp CCEEEEECT--TSCSTTTTTTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC-----CCSTTCCEEE
T ss_pred ceEEEEECC--CCCCccchhhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc-----CccccccEEE
Confidence 346776653 5786543 6899999999999999999999999999999999998754222211 1235799999
Q ss_pred echhhhHhHHHHHhcCcEEEEEEe
Q 009437 158 LPQDAGANLEKLIKNNSVVSVQLY 181 (535)
Q Consensus 158 Is~~~G~~L~~~L~~g~~V~V~l~ 181 (535)
|++++|+.|+. +...++++.
T Consensus 333 i~~~~g~~l~~----~~~~ti~~~ 352 (926)
T 1xf1_A 333 ISRKDGLLLKD----NPQKTITFN 352 (926)
T ss_dssp ECHHHHHHHHH----CSSCEEEEC
T ss_pred EeHHHHHHHHh----CCceEEEec
Confidence 99999998874 445556553
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.95 E-value=1.6e-05 Score=84.74 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=65.3
Q ss_pred CCCCCCC-----CCCCCcEEEEecCCC-----CHHHHHHHHHhcCCcEEEEEeCCCcc--cccccCCCCCCCcccceEEE
Q 009437 90 DCCSKPK-----NKLTGEAILVHRGGC-----SFTAKANFAEEANASAILIINNKTEL--FKMVCESNETDVDIRIPAIM 157 (535)
Q Consensus 90 ~gC~~~~-----~~l~g~IaLV~RG~C-----sF~~Ka~nAq~aGA~avIV~N~~~~l--~~M~~~~~~~~~~i~IPvv~ 157 (535)
+.|.+.+ .+++|||+|++||+| .+.+|+++++++||+++|+|||.+.. ....- .+......||+++
T Consensus 258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~--~~~~~~~~~p~~~ 335 (441)
T 1y9z_A 258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFL--VDANSDITVPSVS 335 (441)
T ss_dssp EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEE--ECTTCCCCSCEEE
T ss_pred hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccc--cccccCccccEEE
Confidence 4587542 589999999999987 89999999999999999999986421 00000 0112346899999
Q ss_pred echhhhHhHHHHHhcCcEEEEEE
Q 009437 158 LPQDAGANLEKLIKNNSVVSVQL 180 (535)
Q Consensus 158 Is~~~G~~L~~~L~~g~~V~V~l 180 (535)
|++++|++|++.+ +++++++.
T Consensus 336 v~~~~g~~l~~~~--~~~~t~~~ 356 (441)
T 1y9z_A 336 VDRATGLALKAKL--GQSTTVSN 356 (441)
T ss_dssp ECHHHHHHHHTTT--TSEEEEEE
T ss_pred EeHHHHHHHHHHh--cCCccccc
Confidence 9999999999887 44565543
No 10
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=96.45 E-value=0.0031 Score=58.56 Aligned_cols=65 Identities=26% Similarity=0.418 Sum_probs=52.2
Q ss_pred eeccCccchhhHHHHHhhh--h-hhhcccccCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCcceehhhchhhhHhHHH
Q 009437 431 SVIGFGDIILPGLIVAFSL--R-YDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLT 506 (535)
Q Consensus 431 s~LGlGDIviPGl~i~~~~--r-fD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QPALLYlvP~~l~~~~~ 506 (535)
--|||||.|+=+++++-+. + +|+. -...|++|..+||.+|.+.+.++ +++-|||.. |..++.++.
T Consensus 88 ikLGLGDFIFYSvLVgkAa~~~~~d~~--------t~~ac~vaIL~GL~~TL~lLa~~-~~aLPALPi--SI~lG~~fy 155 (176)
T 2kr6_A 88 VKLGLGDFIFYSVLVGKASATASGDWN--------TTIACFVAILIGLCLTLLLLAIF-KKALPALPI--SITFGLVFY 155 (176)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHSCCTTT--------THHHHHHHHHHHHHHHHHHHHHH-TCSCSSSSS--CCCCHHHHH
T ss_pred ccccccCeeehHHHHHHHHHhhccCHH--------HHHHHHHHHHHHHHHHHHHHhhh-cccCCCCcH--HHHHHHHHH
Confidence 4599999999999999987 5 3652 26789999999999999999998 899999964 344444433
No 11
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=90.79 E-value=0.26 Score=54.61 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=56.5
Q ss_pred CCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhH
Q 009437 90 DCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANL 166 (535)
Q Consensus 90 ~gC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L 166 (535)
..|.+.. ...+|||++++|+ +..|..+++.+||.+++++|+..+. .....+|.+.++.++|..+
T Consensus 268 ~~~~~~~~~~~~v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~----------~~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 268 RFCTDKSVNPNLLKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDY----------ADSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTTCTTCSCGGGTTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSS----------CCCCSSSEEEECHHHHHHH
T ss_pred ccccccccccccccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCc----------ccccccceEEECHHHHHHH
Confidence 4566544 4689999998754 6689999999999999999986432 1235789999999999999
Q ss_pred HHHHhcCc
Q 009437 167 EKLIKNNS 174 (535)
Q Consensus 167 ~~~L~~g~ 174 (535)
++.+....
T Consensus 335 ~~~~~~~~ 342 (621)
T 3vta_A 335 LRYIYSIR 342 (621)
T ss_dssp HHHHHHHS
T ss_pred HHHHhccC
Confidence 99887544
Done!