BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009441
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 162/501 (32%), Positives = 247/501 (49%), Gaps = 40/501 (7%)
Query: 52 PPVAKKVEHKMELFGDV---------------RVDNYYWLRDDSRSDPEVLAYLKQENDY 96
PP+A K H++ L G V R D Y+W+RDD R DP V+ +L +E Y
Sbjct: 33 PPIAAKKPHRVTL-GYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVY 91
Query: 97 FESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNN 156
F++ + ++ D+++AE I ++D+SAP+ G Y YYTR ++GK Y +CR
Sbjct: 92 FQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCR------ 145
Query: 157 EAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQ-VSPDNKLVAYAEDTKGDE 215
V E G D E +I+D N AEG+ F V + P++ LVA++ D G+E
Sbjct: 146 -----VFTDKEPG-DVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNE 199
Query: 216 IYTVYVIDI-ETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 273
+YT+ I + + + G + W + +L Y+T DE LR +K W H + QS
Sbjct: 200 VYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS 259
Query: 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTPRVV 330
D+CLY E + ++S + + L I S+S T V LD+ K L ++ PR
Sbjct: 260 EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319
Query: 331 GVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFID 388
GV H +H I N +LL P S+ + VL+ H E V ++ I + +
Sbjct: 320 GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSN 379
Query: 389 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV---FSSRILR 445
+L V R GL +I T + K+ G + V +P++++ ES + R
Sbjct: 380 YLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFR 439
Query: 446 FHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVY 505
YSSL TP + +D K+ V GGFD NY ER++A+A D T+IP+ +VY
Sbjct: 440 MEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAANYKVERRFATAPDQTKIPLSVVY 499
Query: 506 RKNLVKLDGSDPLLLYGYGSY 526
K+L + P +LYGYGSY
Sbjct: 500 HKDL-DMSQPQPCMLYGYGSY 519
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 212/502 (42%), Gaps = 74/502 (14%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQEN----DYFESAMSGTKKIE 108
PV ++ E FG D Y WL DD RS PE A++K +N DY + + I+
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYL-AQIPYRAAIK 69
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMET 168
+ + A APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWN----YAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA------- 114
Query: 169 GPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228
+ LD N + G ++ S D +++AY+ G + ++++D+E+
Sbjct: 115 -------EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ 166
Query: 229 PVGKPLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDI 276
P+ PL V S + W GNE Y + D +PD K + H+L Q +D
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDR 223
Query: 277 CLYHEKDDIYS--LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VD 333
++ + +G +E +FL I++ + + Y+ E +LT V G +D
Sbjct: 224 LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLD 281
Query: 334 TAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFID 388
S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 282 ADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV---------- 330
Query: 389 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRF 446
L V+ G L Y + A + GK V + + S+ L F
Sbjct: 331 -LTVHSGSGYL--FAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF 387
Query: 447 HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYR 506
+ + PP++Y ++ G L + F +Y +E+++ + DGT++P+ I YR
Sbjct: 388 GFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYR 445
Query: 507 KNLVKLDGSDPLLLYGYGSYEV 528
K L KLDGS+P +LYGYG ++V
Sbjct: 446 KGL-KLDGSNPTILYGYGGFDV 466
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 211/502 (42%), Gaps = 74/502 (14%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQEN----DYFESAMSGTKKIE 108
PV ++ E FG D Y WL DD RS PE A++K +N DY + + I+
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYL-AQIPYRAAIK 69
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMET 168
+ + A APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWN----YAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA------- 114
Query: 169 GPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228
+ LD N + G ++ S D +++AY+ G + +++ D+E+
Sbjct: 115 -------EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQ 166
Query: 229 PVGKPLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDI 276
P+ PL V S + W GNE Y + D +PD K + H+L Q +D
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDR 223
Query: 277 CLYHEKDDIYS--LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VD 333
++ + +G +E +FL I++ + + Y+ E +LT V G +D
Sbjct: 224 LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLD 281
Query: 334 TAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFID 388
S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 282 ADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV---------- 330
Query: 389 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRF 446
L V+ G L Y + A + GK V + + S+ L F
Sbjct: 331 -LTVHSGSGYL--FAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF 387
Query: 447 HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYR 506
+ + PP++Y ++ G L + F +Y +E+++ + DGT++P+ I YR
Sbjct: 388 GFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYR 445
Query: 507 KNLVKLDGSDPLLLYGYGSYEV 528
K L KLDGS+P +LYGYG ++V
Sbjct: 446 KGL-KLDGSNPTILYGYGGFDV 466
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 211/502 (42%), Gaps = 74/502 (14%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQEN----DYFESAMSGTKKIE 108
PV ++ E FG D Y WL DD RS PE A++K +N DY + + I+
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYL-AQIPYRAAIK 69
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMET 168
+ + A APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWN----YAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA------- 114
Query: 169 GPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228
+ LD N + G ++ S D +++AY+ G + +++ D+E+
Sbjct: 115 -------EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQ 166
Query: 229 PVGKPLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDI 276
P+ PL V S + W GNE Y + D +PD K + H+L Q +D
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDR 223
Query: 277 CLYHEKDDIYS--LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VD 333
++ + +G +E +FL I++ + + Y+ E +LT V G +D
Sbjct: 224 LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLD 281
Query: 334 TAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFID 388
S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 282 ADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV---------- 330
Query: 389 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRF 446
L V+ G L Y + A + GK V + + S+ L F
Sbjct: 331 -LTVHSGSGYL--FAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF 387
Query: 447 HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYR 506
+ + PP++Y ++ G L + F +Y +E+++ + DGT++P+ I YR
Sbjct: 388 GFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYR 445
Query: 507 KNLVKLDGSDPLLLYGYGSYEV 528
K L KLDGS+P +LYGYG ++V
Sbjct: 446 KGL-KLDGSNPTILYGYGGFDV 466
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 123/506 (24%), Positives = 215/506 (42%), Gaps = 82/506 (16%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
PV ++ E FG D Y WL DD RS PE A++K +N + ++ +
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYLAQIP-YRAAIK 69
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
+L APF G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWNYAKEGAPFWWGRYHYFFKN----DGLQNQNVLWRQQEGKPA----------- 114
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
+ LD N + G ++ S D +++AY+ G + ++++D+E+ P+
Sbjct: 115 ---EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET 170
Query: 233 PLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLYH 280
PL V S + W GNE Y + D +PD K + H+L Q +D ++
Sbjct: 171 PLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG 227
Query: 281 EKDDIYS--LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAAS 337
+ +G +E ++FL I++ + + Y+ E +LT V G +D S
Sbjct: 228 AIPAQHHRYVGATVTEDQRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLDADVS 285
Query: 338 ---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRE---SVKLQDIQLFIDH 389
++G+ ++ D N L+ N LIP R+ +V LF ++
Sbjct: 286 LVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEY 344
Query: 390 LA-------VYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSR 442
+ ++ EG +++ LP +G + G Y DP+
Sbjct: 345 MVDATARVEQFDYEG--KRVREVALPGLGS-VSGFNG----------YWWDPA------- 384
Query: 443 ILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
L F + + PP++Y ++ G L + F +Y +E+++ + DGT++P+
Sbjct: 385 -LYFGFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLI 441
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
I YRK L KLDGS+P +LYGYG ++V
Sbjct: 442 ISYRKGL-KLDGSNPTILYGYGGFDV 466
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 215/494 (43%), Gaps = 60/494 (12%)
Query: 55 AKKVEHKMELFGDVRV-DNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFA 113
A + E ++ V+V D Y WL D+ PEV ++ +N + A++ E + A
Sbjct: 5 ATRAEQVVDTLHGVQVADPYRWLEDEKA--PEVQTWMTAQNAHAREALAKFPGRE-ALAA 61
Query: 114 ELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAP 173
K + VS P R+ ++Y RT + KE + +++ + E+G
Sbjct: 62 RFKELFYTDSVSTPSRRNGRFFYVRTHKDKE-----KAILYWRQG--------ESGQ--- 105
Query: 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP 233
E ++LD N ++ G S+G + VS D K VA+A+ + ++VID+++G
Sbjct: 106 -EKVLLDPNGWSK-DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD 163
Query: 234 LV--GVTASVEWAGNEALVY---------ITMDEILRPDKAWL--HKLEADQSNDICLYH 280
++ G A+ +W + Y I +DE RP + H L + S D + H
Sbjct: 164 VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE--RPGYTTIRYHTLGTEPSKDTVV-H 220
Query: 281 EKDDIYSLGLQASESK--KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASH 338
E+ + LQ+ S+ K+LF+ + Y ++ R+L + VG
Sbjct: 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV-KGVGAKYEVHA 279
Query: 339 RGNHFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFIDHLAVYEREG 397
+ F++ P + ++P S L + + HL++ +
Sbjct: 280 WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD 339
Query: 398 GLQKITTYRLPAVGEPLKSLQ--GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPP 455
++ L G+P++++Q G + + + +D + VF+S TP
Sbjct: 340 ATSEVRVATLK--GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS---------FTTPR 388
Query: 456 SVYDYDMDMGISVL-KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDG 514
+Y + G S L K++ + + Y E+ + ++ DGT++P+ +V+RK+L K DG
Sbjct: 389 QIYKTSVSTGKSELWAKVDVPM---NPEQYQVEQVFYASKDGTKVPMFVVHRKDL-KRDG 444
Query: 515 SDPLLLYGYGSYEV 528
+ P LLYGYG + V
Sbjct: 445 NAPTLLYGYGGFNV 458
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 117/514 (22%), Positives = 205/514 (39%), Gaps = 72/514 (14%)
Query: 49 LPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIE 108
LP P + +V + FG+ D + WL D R+D +V A+++ ++ Y + + K++
Sbjct: 37 LPPYPASPQVPLVEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYL---KQLP 93
Query: 109 DNMFAE--LKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTM 166
+ E +K I E P R+G+ +Y+ + + L+ +AP
Sbjct: 94 ERAALEKRMKALIDYERFGLPQRRGASVFYSWN---SGLMNQSQLLVRPADAPVGTKG-- 148
Query: 167 ETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET 226
++LD N A+ G ++ + S D +L+AY+ G + TV + +
Sbjct: 149 ---------RVLLDPNTWAK-DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD 198
Query: 227 GTPVGKPLVGVT-ASVEWAGNEALVYITMDE---------ILRPDKAWLHKLEADQSNDI 276
G P+ L V + + W GN+AL+Y E + WLH+L QS D
Sbjct: 199 GKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ 258
Query: 277 CLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA 335
++ + G S +++ I S S+ T V + V++ +T +G TA
Sbjct: 259 PVFATPELPKRGHGASVSSDGRWVVITS-SEGTDPVNTVHVAR------VTNGKIGPVTA 311
Query: 336 --ASHRGNHFFITRRSDELFNSELLACPV---------DNTSETTVLIPHR----ESVKL 380
+ F+ D+L+ P+ +T ++P ESV +
Sbjct: 312 LIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI 371
Query: 381 QDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFS 440
+LF ++ ++ + L SL G S + S P +
Sbjct: 372 AGNRLFASYI-----HDAKSQVLAFDLDGKPAGAVSLPGIGSASGL----SGRPGD---- 418
Query: 441 SRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIP 500
R +SS P +V +D + E V FD ++ E+ + + DGT++P
Sbjct: 419 -RHAYLSFSSFTQPATV--LALDPATAKTTPWEPVHLTFDPADFRVEQVFYPSKDGTKVP 475
Query: 501 ICIVYRKNLVKLDGSDPLLLYGYGSYEVIFFFLF 534
+ IV RK+ G P LLYGYG + V F
Sbjct: 476 MFIVRRKD---AKGPLPTLLYGYGGFNVALTPWF 506
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 454 PPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLD 513
PP++Y + + LK I L FD+ NY E+K A++ DG +IP +VY+K +K D
Sbjct: 420 PPTIYLW---VKTHELKIIRKALYSFDSENYVLEQKEATSFDGVKIPYFLVYKKG-IKFD 475
Query: 514 GSDPLLLYGYGSYEVI 529
G +P LL YG ++VI
Sbjct: 476 GKNPTLLEAYGGFQVI 491
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 395 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 452
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 453 IVHKKG-IKLDGSHPAFLYGYGGFNI 477
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTCKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YCFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYGYG + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNI 478
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEV 528
IV++K +KLDGS P LYG+G + +
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGFGGFNI 478
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 171 DAPPEHLILDENVKAEGRGFYSVGCF-QVSPDNKLVAYAEDTKGDEIYTVYVIDIET 226
D E+ I+ EN+K R F ++SPD K +A+ + ++ ++V D+ET
Sbjct: 38 DNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,114,933
Number of Sequences: 62578
Number of extensions: 690896
Number of successful extensions: 1659
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1594
Number of HSP's gapped (non-prelim): 29
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)