Query 009441
Match_columns 534
No_of_seqs 251 out of 1825
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 13:09:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1770 PtrB Protease II [Amin 100.0 9.1E-94 2E-98 732.6 53.6 458 50-534 4-466 (682)
2 PRK10115 protease 2; Provision 100.0 3.6E-74 7.9E-79 629.1 61.6 456 52-534 2-463 (686)
3 KOG2237 Predicted serine prote 100.0 2.2E-74 4.7E-79 584.6 37.8 465 49-534 3-488 (712)
4 PF02897 Peptidase_S9_N: Proly 100.0 4E-67 8.6E-72 549.6 48.3 396 52-472 1-413 (414)
5 COG1505 Serine proteases of th 100.0 5.1E-49 1.1E-53 398.6 36.8 421 69-534 2-439 (648)
6 TIGR02800 propeller_TolB tol-p 99.6 3.7E-14 8E-19 149.0 24.5 277 93-412 118-399 (417)
7 PRK04792 tolB translocation pr 99.5 1.7E-11 3.7E-16 129.5 28.8 203 193-412 220-427 (448)
8 PRK05137 tolB translocation pr 99.5 4.9E-11 1.1E-15 125.9 29.7 201 193-408 204-412 (435)
9 PRK01029 tolB translocation pr 99.4 1.2E-10 2.7E-15 122.1 29.3 206 194-409 188-404 (428)
10 PRK00178 tolB translocation pr 99.4 1.8E-10 3.9E-15 121.6 29.6 203 193-412 201-408 (430)
11 PRK04043 tolB translocation pr 99.4 3.6E-10 7.7E-15 118.0 29.7 204 193-412 190-402 (419)
12 COG1506 DAP2 Dipeptidyl aminop 99.4 5.7E-10 1.2E-14 122.5 32.3 318 193-533 62-411 (620)
13 PRK03629 tolB translocation pr 99.4 8.1E-10 1.8E-14 116.2 31.9 203 193-412 201-408 (429)
14 PRK04922 tolB translocation pr 99.4 3E-10 6.6E-15 119.8 28.5 201 193-408 206-411 (433)
15 PRK02889 tolB translocation pr 99.4 1.3E-10 2.8E-15 122.3 24.2 203 193-412 198-405 (427)
16 PRK04043 tolB translocation pr 99.4 8.1E-10 1.8E-14 115.3 28.9 245 203-471 155-408 (419)
17 PRK01029 tolB translocation pr 99.3 6.4E-10 1.4E-14 116.7 28.0 251 202-472 146-412 (428)
18 PRK05137 tolB translocation pr 99.3 1E-09 2.2E-14 115.9 28.6 246 201-470 164-419 (435)
19 PRK04922 tolB translocation pr 99.3 7.9E-10 1.7E-14 116.6 23.5 160 194-364 251-412 (433)
20 PRK00178 tolB translocation pr 99.3 8.9E-10 1.9E-14 116.3 23.9 160 194-364 246-407 (430)
21 PRK04792 tolB translocation pr 99.3 1.1E-09 2.5E-14 115.6 23.9 158 195-363 266-425 (448)
22 PRK03629 tolB translocation pr 99.2 2.5E-09 5.5E-14 112.5 25.0 160 194-364 246-407 (429)
23 PRK02889 tolB translocation pr 99.2 3.7E-09 8E-14 111.3 24.8 159 194-363 243-403 (427)
24 PRK01742 tolB translocation pr 99.2 1.3E-08 2.8E-13 107.3 27.9 197 193-412 206-406 (429)
25 COG0823 TolB Periplasmic compo 99.0 1.3E-08 2.9E-13 105.6 19.2 159 194-362 241-401 (425)
26 TIGR02800 propeller_TolB tol-p 99.0 5.7E-07 1.2E-11 94.4 28.4 242 199-464 152-398 (417)
27 PF00930 DPPIV_N: Dipeptidyl p 98.9 3.7E-07 7.9E-12 93.7 23.7 241 193-455 45-353 (353)
28 PRK01742 tolB translocation pr 98.8 1.9E-06 4.1E-11 90.9 27.2 189 202-409 168-362 (429)
29 COG0823 TolB Periplasmic compo 98.8 3.2E-07 6.9E-12 95.4 17.9 205 192-412 194-404 (425)
30 PF00930 DPPIV_N: Dipeptidyl p 98.6 9.5E-06 2.1E-10 83.3 22.0 199 194-398 104-350 (353)
31 KOG2281 Dipeptidyl aminopeptid 98.5 1.2E-05 2.6E-10 83.9 20.0 131 389-530 517-656 (867)
32 PF02897 Peptidase_S9_N: Proly 98.2 0.0023 4.9E-08 67.2 28.9 250 129-412 133-407 (414)
33 PF08662 eIF2A: Eukaryotic tra 98.1 0.00023 5.1E-09 66.3 17.8 142 195-348 10-163 (194)
34 TIGR03866 PQQ_ABC_repeats PQQ- 98.1 0.0059 1.3E-07 60.1 29.0 240 194-467 34-283 (300)
35 PF14583 Pectate_lyase22: Olig 98.0 0.0021 4.5E-08 65.0 22.8 200 196-409 41-273 (386)
36 COG4946 Uncharacterized protei 97.9 0.0018 4E-08 65.5 20.2 246 193-471 39-303 (668)
37 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.0041 8.9E-08 63.0 21.9 196 195-412 109-333 (352)
38 TIGR03866 PQQ_ABC_repeats PQQ- 97.8 0.017 3.7E-07 56.8 25.7 195 194-412 76-282 (300)
39 KOG2100 Dipeptidyl aminopeptid 97.8 0.043 9.3E-07 61.8 30.8 131 388-528 400-538 (755)
40 KOG2055 WD40 repeat protein [G 97.8 0.0006 1.3E-08 68.7 14.3 201 191-405 304-511 (514)
41 COG2706 3-carboxymuconate cycl 97.8 0.053 1.1E-06 53.6 27.3 262 193-472 42-332 (346)
42 PF08662 eIF2A: Eukaryotic tra 97.7 0.00061 1.3E-08 63.5 12.8 101 192-304 61-163 (194)
43 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.07 1.5E-06 54.2 27.9 241 197-467 52-334 (352)
44 PRK13616 lipoprotein LpqB; Pro 97.7 0.0043 9.2E-08 67.6 20.2 158 192-365 351-529 (591)
45 KOG0293 WD40 repeat-containing 97.7 0.0021 4.5E-08 64.0 15.8 191 192-412 271-473 (519)
46 KOG0318 WD40 repeat stress pro 97.7 0.052 1.1E-06 56.0 26.2 202 191-408 60-308 (603)
47 PRK11028 6-phosphogluconolacto 97.6 0.074 1.6E-06 53.8 27.7 157 194-363 38-205 (330)
48 PF02239 Cytochrom_D1: Cytochr 97.5 0.17 3.7E-06 52.2 27.9 285 194-507 40-338 (369)
49 KOG0315 G-protein beta subunit 97.4 0.024 5.2E-07 53.2 18.5 145 192-346 42-233 (311)
50 KOG0318 WD40 repeat stress pro 97.4 0.05 1.1E-06 56.1 22.2 193 192-408 192-392 (603)
51 KOG2314 Translation initiation 97.4 0.022 4.8E-07 59.0 19.8 201 192-408 307-525 (698)
52 PF14583 Pectate_lyase22: Olig 97.3 0.028 6.1E-07 57.0 19.4 161 196-366 86-275 (386)
53 PRK13616 lipoprotein LpqB; Pro 97.3 0.02 4.2E-07 62.5 19.5 116 193-320 399-530 (591)
54 KOG0272 U4/U6 small nuclear ri 97.3 0.0086 1.9E-07 60.0 15.1 112 191-317 262-377 (459)
55 KOG4497 Uncharacterized conser 97.3 0.0057 1.2E-07 59.4 13.4 139 196-350 14-155 (447)
56 KOG0291 WD40-repeat-containing 97.3 0.022 4.7E-07 61.1 18.8 140 190-344 350-494 (893)
57 KOG2237 Predicted serine prote 97.2 0.0041 8.8E-08 65.8 12.9 82 173-255 107-190 (712)
58 PRK10115 protease 2; Provision 97.2 0.28 6.1E-06 54.9 28.1 163 238-408 129-301 (686)
59 PF06433 Me-amine-dh_H: Methyl 97.2 0.024 5.3E-07 56.4 17.0 100 217-319 17-128 (342)
60 KOG2139 WD40 repeat protein [G 97.2 0.0044 9.5E-08 60.9 11.4 113 188-315 193-309 (445)
61 PF10282 Lactonase: Lactonase, 97.2 0.37 8.1E-06 49.2 30.2 262 193-472 39-333 (345)
62 PTZ00421 coronin; Provisional 97.1 0.25 5.4E-06 52.9 25.3 157 192-364 77-246 (493)
63 PF02239 Cytochrom_D1: Cytochr 97.1 0.11 2.5E-06 53.4 21.7 173 218-409 17-203 (369)
64 KOG0293 WD40 repeat-containing 97.0 0.037 7.9E-07 55.5 16.6 189 193-408 227-425 (519)
65 KOG1273 WD40 repeat protein [G 97.0 0.15 3.2E-06 49.6 20.0 188 194-408 27-226 (405)
66 cd00200 WD40 WD40 domain, foun 97.0 0.33 7.1E-06 46.3 27.8 193 192-409 11-208 (289)
67 KOG0266 WD40 repeat-containing 97.0 0.26 5.6E-06 52.5 24.2 197 190-409 203-410 (456)
68 PRK11028 6-phosphogluconolacto 97.0 0.13 2.9E-06 52.0 20.9 157 194-361 129-304 (330)
69 cd00200 WD40 WD40 domain, foun 96.8 0.26 5.6E-06 47.0 21.0 186 192-399 95-284 (289)
70 COG4946 Uncharacterized protei 96.8 0.11 2.4E-06 53.1 17.6 123 218-350 383-510 (668)
71 PTZ00420 coronin; Provisional 96.7 0.25 5.4E-06 53.6 21.3 118 192-319 127-250 (568)
72 KOG0279 G protein beta subunit 96.6 0.66 1.4E-05 44.5 20.3 194 192-409 65-263 (315)
73 KOG0271 Notchless-like WD40 re 96.4 0.018 3.8E-07 57.2 9.3 93 192-300 369-467 (480)
74 KOG0645 WD40 repeat protein [G 96.4 0.95 2.1E-05 43.3 21.3 70 191-269 62-135 (312)
75 PF08450 SGL: SMP-30/Gluconola 96.2 1.2 2.6E-05 42.9 30.2 222 195-448 4-244 (246)
76 KOG1446 Histone H3 (Lys4) meth 96.2 0.44 9.6E-06 46.4 17.3 155 192-365 102-264 (311)
77 PTZ00420 coronin; Provisional 96.2 2.5 5.5E-05 46.0 27.5 113 192-320 76-200 (568)
78 KOG0973 Histone transcription 96.2 0.12 2.5E-06 57.8 14.8 116 192-316 131-252 (942)
79 KOG0275 Conserved WD40 repeat- 96.2 0.19 4.2E-06 48.8 14.5 200 192-415 215-428 (508)
80 PF10282 Lactonase: Lactonase, 96.1 1.9 4.1E-05 44.0 28.7 244 217-473 15-287 (345)
81 PF07676 PD40: WD40-like Beta 96.1 0.0092 2E-07 39.6 3.9 28 194-221 12-39 (39)
82 KOG1407 WD40 repeat protein [F 96.1 0.64 1.4E-05 44.3 17.2 175 196-394 112-289 (313)
83 KOG0279 G protein beta subunit 96.0 0.27 5.8E-06 47.1 14.6 98 192-301 194-300 (315)
84 PTZ00421 coronin; Provisional 96.0 0.93 2E-05 48.6 20.6 117 192-320 127-248 (493)
85 KOG0271 Notchless-like WD40 re 95.8 0.2 4.3E-06 49.9 13.1 66 195-271 120-189 (480)
86 KOG2048 WD40 repeat protein [G 95.7 0.32 7E-06 51.8 14.8 156 189-363 381-548 (691)
87 PF10647 Gmad1: Lipoprotein Lp 95.6 2.4 5.2E-05 41.2 20.7 119 191-316 24-143 (253)
88 KOG1407 WD40 repeat protein [F 95.6 1.1 2.5E-05 42.6 16.6 148 192-361 22-177 (313)
89 KOG0296 Angio-associated migra 95.5 3.1 6.8E-05 41.5 20.7 100 192-304 108-210 (399)
90 PF06433 Me-amine-dh_H: Methyl 95.5 0.79 1.7E-05 45.9 16.1 154 193-365 97-279 (342)
91 KOG0283 WD40 repeat-containing 95.3 1.6 3.6E-05 47.7 19.2 30 192-226 269-298 (712)
92 PLN00181 protein SPA1-RELATED; 95.1 8 0.00017 44.3 25.7 194 192-408 485-690 (793)
93 KOG0305 Anaphase promoting com 95.0 1.7 3.6E-05 45.9 17.6 196 191-408 218-419 (484)
94 PF08450 SGL: SMP-30/Gluconola 95.0 1.9 4E-05 41.5 17.2 150 189-348 84-245 (246)
95 KOG0266 WD40 repeat-containing 94.9 6.2 0.00013 42.0 22.7 198 190-409 159-365 (456)
96 KOG0275 Conserved WD40 repeat- 94.9 0.21 4.6E-06 48.6 9.7 105 192-312 265-375 (508)
97 TIGR02171 Fb_sc_TIGR02171 Fibr 94.8 0.24 5.3E-06 55.3 11.4 117 202-327 318-452 (912)
98 COG5354 Uncharacterized protei 94.8 5.6 0.00012 41.5 20.2 160 175-349 118-295 (561)
99 KOG0650 WD40 repeat nucleolar 94.7 1.2 2.6E-05 47.1 15.3 199 192-409 402-638 (733)
100 KOG0272 U4/U6 small nuclear ri 94.7 0.34 7.4E-06 48.9 10.9 107 192-313 305-416 (459)
101 KOG0973 Histone transcription 94.6 0.97 2.1E-05 50.8 15.2 103 190-305 69-192 (942)
102 TIGR02171 Fb_sc_TIGR02171 Fibr 94.3 0.47 1E-05 53.1 12.2 61 193-254 352-419 (912)
103 KOG0643 Translation initiation 94.2 3.1 6.8E-05 39.9 15.7 119 192-319 54-179 (327)
104 KOG0639 Transducin-like enhanc 94.1 1.2 2.5E-05 46.2 13.5 187 192-403 467-701 (705)
105 KOG0771 Prolactin regulatory e 94.1 0.99 2.1E-05 45.6 12.8 117 191-318 187-312 (398)
106 KOG0278 Serine/threonine kinas 94.0 3.1 6.7E-05 39.5 15.1 190 192-408 102-299 (334)
107 KOG4378 Nuclear protein COP1 [ 94.0 1.6 3.5E-05 45.2 14.1 115 191-320 165-283 (673)
108 PF10647 Gmad1: Lipoprotein Lp 93.9 2.2 4.8E-05 41.5 15.0 76 174-254 100-184 (253)
109 KOG0263 Transcription initiati 93.8 0.72 1.6E-05 50.0 12.1 98 192-302 537-637 (707)
110 KOG1445 Tumor-specific antigen 93.8 0.73 1.6E-05 48.9 11.6 100 192-305 679-785 (1012)
111 PF06977 SdiA-regulated: SdiA- 93.6 7.3 0.00016 37.7 21.3 203 174-394 7-239 (248)
112 KOG0263 Transcription initiati 93.5 1.1 2.4E-05 48.6 12.8 139 193-344 454-635 (707)
113 KOG0289 mRNA splicing factor [ 93.4 5.4 0.00012 40.8 16.5 119 192-326 349-470 (506)
114 KOG1273 WD40 repeat protein [G 93.3 3 6.4E-05 40.9 13.9 158 175-348 46-216 (405)
115 KOG1063 RNA polymerase II elon 93.2 0.94 2E-05 48.6 11.4 108 190-305 525-638 (764)
116 KOG0305 Anaphase promoting com 93.1 1.7 3.7E-05 45.8 13.3 106 191-305 344-452 (484)
117 KOG2110 Uncharacterized conser 92.9 1.1 2.4E-05 44.7 10.8 115 191-318 130-249 (391)
118 KOG0295 WD40 repeat-containing 92.8 3.6 7.7E-05 41.1 14.0 145 192-349 237-395 (406)
119 KOG2314 Translation initiation 92.7 7 0.00015 41.3 16.6 164 192-363 348-525 (698)
120 KOG1274 WD40 repeat protein [G 92.6 9.8 0.00021 42.6 18.3 126 173-318 86-219 (933)
121 KOG4499 Ca2+-binding protein R 92.5 2 4.3E-05 40.5 11.3 118 193-320 111-244 (310)
122 KOG2394 WD40 protein DMR-N9 [G 92.4 0.14 2.9E-06 53.2 4.0 56 192-253 292-350 (636)
123 KOG2315 Predicted translation 92.3 7.8 0.00017 40.9 16.4 146 195-357 222-380 (566)
124 KOG0771 Prolactin regulatory e 92.3 6.3 0.00014 40.0 15.3 176 194-388 148-335 (398)
125 COG3386 Gluconolactonase [Carb 92.2 14 0.00029 37.1 22.6 226 196-454 30-280 (307)
126 COG3386 Gluconolactonase [Carb 92.2 10 0.00022 37.9 17.0 152 191-350 111-277 (307)
127 COG3391 Uncharacterized conser 92.2 16 0.00035 37.8 21.7 199 194-409 77-284 (381)
128 KOG2096 WD40 repeat protein [G 92.1 7.1 0.00015 38.4 14.8 208 179-404 77-306 (420)
129 KOG0286 G-protein beta subunit 91.8 2.2 4.7E-05 41.4 10.9 101 192-307 231-336 (343)
130 KOG0299 U3 snoRNP-associated p 91.8 9.4 0.0002 39.3 15.9 59 192-255 204-265 (479)
131 PF07676 PD40: WD40-like Beta 91.6 0.46 1E-05 31.2 4.7 28 286-313 10-39 (39)
132 KOG0772 Uncharacterized conser 91.6 7.2 0.00016 40.8 15.0 197 191-402 269-483 (641)
133 PF13360 PQQ_2: PQQ-like domai 91.4 11 0.00024 35.5 16.1 184 199-412 33-233 (238)
134 KOG0291 WD40-repeat-containing 91.2 27 0.00059 38.5 27.0 183 192-396 309-499 (893)
135 KOG0289 mRNA splicing factor [ 90.7 22 0.00048 36.6 19.5 173 193-388 306-486 (506)
136 COG5354 Uncharacterized protei 90.6 8.4 0.00018 40.3 14.5 142 196-348 228-379 (561)
137 PRK02888 nitrous-oxide reducta 90.3 4 8.6E-05 44.4 12.5 147 197-363 199-351 (635)
138 KOG1539 WD repeat protein [Gen 90.2 0.87 1.9E-05 49.9 7.4 59 192-255 578-638 (910)
139 KOG2055 WD40 repeat protein [G 90.0 26 0.00056 36.3 19.4 206 176-403 201-414 (514)
140 COG3458 Acetyl esterase (deace 89.8 0.78 1.7E-05 44.2 6.0 43 479-524 49-91 (321)
141 KOG2110 Uncharacterized conser 89.3 3.5 7.5E-05 41.3 10.2 90 173-271 152-250 (391)
142 PF07433 DUF1513: Protein of u 89.2 25 0.00054 34.9 19.3 153 196-362 104-284 (305)
143 KOG0319 WD40-repeat-containing 88.9 21 0.00046 39.1 16.3 191 190-406 192-395 (775)
144 KOG2315 Predicted translation 88.9 4.8 0.0001 42.4 11.3 58 194-254 315-373 (566)
145 PF07433 DUF1513: Protein of u 88.7 27 0.00058 34.7 23.9 65 188-252 48-116 (305)
146 COG2706 3-carboxymuconate cycl 88.6 29 0.00062 34.9 29.7 244 239-504 43-320 (346)
147 KOG4227 WD40 repeat protein [G 88.3 11 0.00023 38.2 12.8 80 192-283 58-147 (609)
148 KOG0284 Polyadenylation factor 88.2 12 0.00025 38.2 13.1 194 191-408 181-382 (464)
149 KOG2096 WD40 repeat protein [G 87.7 6.6 0.00014 38.6 10.7 111 195-320 233-363 (420)
150 KOG0286 G-protein beta subunit 87.4 7.5 0.00016 37.8 10.8 100 192-303 188-292 (343)
151 KOG0268 Sof1-like rRNA process 87.2 6.4 0.00014 39.4 10.5 157 189-362 186-346 (433)
152 KOG0306 WD40-repeat-containing 87.1 54 0.0012 36.3 18.4 185 196-401 418-617 (888)
153 KOG2919 Guanine nucleotide-bin 86.9 22 0.00047 35.3 13.7 179 218-412 134-331 (406)
154 KOG0640 mRNA cleavage stimulat 86.8 4.3 9.4E-05 39.7 8.9 113 175-300 195-321 (430)
155 KOG0296 Angio-associated migra 86.4 39 0.00084 34.0 20.7 151 192-364 66-221 (399)
156 KOG4497 Uncharacterized conser 86.1 7.3 0.00016 38.5 10.2 99 193-305 51-154 (447)
157 KOG0647 mRNA export protein (c 86.1 37 0.00079 33.4 18.9 73 192-272 29-105 (347)
158 PF05448 AXE1: Acetyl xylan es 85.7 1.2 2.6E-05 44.9 5.0 44 481-527 51-94 (320)
159 KOG1274 WD40 repeat protein [G 85.7 69 0.0015 36.2 23.1 191 194-408 17-218 (933)
160 PF12715 Abhydrolase_7: Abhydr 85.3 1.4 3E-05 44.9 5.1 42 481-525 83-124 (390)
161 KOG0273 Beta-transducin family 85.2 15 0.00032 38.1 12.2 107 192-316 403-522 (524)
162 KOG0640 mRNA cleavage stimulat 85.1 26 0.00057 34.5 13.3 99 194-304 116-236 (430)
163 KOG0278 Serine/threonine kinas 84.9 17 0.00036 34.7 11.5 111 192-316 186-298 (334)
164 PF05694 SBP56: 56kDa selenium 83.9 14 0.0003 38.4 11.5 102 217-323 222-348 (461)
165 KOG0303 Actin-binding protein 83.9 54 0.0012 33.5 17.1 113 193-320 84-206 (472)
166 KOG0283 WD40 repeat-containing 83.8 11 0.00023 41.6 11.3 122 177-318 443-577 (712)
167 KOG4283 Transcription-coupled 83.7 34 0.00074 33.5 13.3 72 176-254 126-208 (397)
168 PF11768 DUF3312: Protein of u 83.5 5.6 0.00012 42.3 8.8 88 193-289 262-349 (545)
169 COG1506 DAP2 Dipeptidyl aminop 83.3 80 0.0017 35.1 20.7 206 192-407 102-343 (620)
170 KOG0277 Peroxisomal targeting 83.3 45 0.00097 32.1 16.6 194 196-408 14-221 (311)
171 KOG0264 Nucleosome remodeling 82.6 63 0.0014 33.3 16.4 196 196-406 183-404 (422)
172 KOG1445 Tumor-specific antigen 82.4 22 0.00048 38.3 12.4 60 192-256 722-786 (1012)
173 KOG0315 G-protein beta subunit 82.3 48 0.001 31.8 17.0 113 193-318 127-246 (311)
174 KOG1009 Chromatin assembly com 82.2 18 0.00038 36.9 11.2 107 181-303 58-184 (434)
175 COG1770 PtrB Protease II [Amin 81.9 87 0.0019 34.4 27.3 216 239-472 132-357 (682)
176 KOG1009 Chromatin assembly com 81.6 1.6 3.6E-05 44.0 3.9 107 193-304 126-250 (434)
177 KOG2106 Uncharacterized conser 81.6 19 0.00042 37.7 11.4 105 196-314 413-519 (626)
178 KOG0772 Uncharacterized conser 81.1 79 0.0017 33.5 22.0 139 185-331 162-314 (641)
179 PRK10162 acetyl esterase; Prov 80.8 2.5 5.4E-05 42.6 5.0 37 484-526 55-91 (318)
180 PF04762 IKI3: IKI3 family; I 80.5 25 0.00055 40.9 13.5 107 195-304 214-324 (928)
181 KOG0294 WD40 repeat-containing 80.4 64 0.0014 32.0 16.3 67 193-270 130-198 (362)
182 KOG0302 Ribosome Assembly prot 80.2 63 0.0014 32.8 14.1 151 196-362 217-377 (440)
183 PRK02888 nitrous-oxide reducta 80.1 14 0.0003 40.4 10.4 112 194-318 238-352 (635)
184 KOG0646 WD40 repeat protein [G 80.0 81 0.0017 32.9 18.6 55 193-253 84-141 (476)
185 KOG0303 Actin-binding protein 79.8 54 0.0012 33.5 13.6 70 192-269 133-203 (472)
186 PRK13613 lipoprotein LpqB; Pro 79.6 1E+02 0.0022 34.1 17.0 165 192-365 364-541 (599)
187 KOG2321 WD40 repeat protein [G 79.2 96 0.0021 33.3 15.7 30 194-227 55-84 (703)
188 KOG1007 WD repeat protein TSSC 78.3 44 0.00095 32.7 12.0 114 192-320 125-248 (370)
189 KOG2139 WD40 repeat protein [G 78.2 81 0.0018 31.9 16.1 196 191-408 99-311 (445)
190 KOG0273 Beta-transducin family 77.9 4 8.6E-05 42.1 5.2 54 192-250 454-509 (524)
191 PLN02919 haloacid dehalogenase 77.7 42 0.0009 39.8 14.4 114 194-320 743-891 (1057)
192 COG3391 Uncharacterized conser 77.6 35 0.00076 35.3 12.5 117 194-320 163-286 (381)
193 PRK13614 lipoprotein LpqB; Pro 77.3 1.1E+02 0.0025 33.4 16.5 162 192-363 344-518 (573)
194 KOG0645 WD40 repeat protein [G 76.8 76 0.0016 30.8 22.4 192 192-404 16-223 (312)
195 KOG1524 WD40 repeat-containing 76.5 16 0.00034 38.6 9.1 86 193-304 189-276 (737)
196 KOG1408 WD40 repeat protein [F 75.6 1.4E+02 0.003 33.2 17.8 35 189-228 458-492 (1080)
197 PLN00181 protein SPA1-RELATED; 75.3 1.6E+02 0.0034 33.8 26.7 111 193-320 535-651 (793)
198 PF04083 Abhydro_lipase: Parti 74.6 11 0.00023 28.0 5.5 49 482-530 8-57 (63)
199 KOG0288 WD40 repeat protein Ti 74.1 4.6 0.0001 41.0 4.5 53 193-250 390-447 (459)
200 KOG0282 mRNA splicing factor [ 71.4 58 0.0013 34.0 11.6 150 193-364 302-463 (503)
201 KOG1963 WD40 repeat protein [G 71.3 64 0.0014 36.1 12.6 108 193-316 208-321 (792)
202 KOG1539 WD repeat protein [Gen 70.9 23 0.00049 39.5 9.0 82 214-304 553-637 (910)
203 KOG0643 Translation initiation 70.1 1.1E+02 0.0024 29.7 13.6 116 191-318 94-221 (327)
204 KOG0313 Microtubule binding pr 69.9 75 0.0016 32.3 11.7 112 192-315 262-376 (423)
205 PLN02919 haloacid dehalogenase 69.7 2.5E+02 0.0053 33.5 25.1 116 193-320 626-773 (1057)
206 PRK05077 frsA fermentation/res 69.3 9 0.0002 40.2 5.8 41 483-528 165-205 (414)
207 KOG1523 Actin-related protein 68.6 41 0.00089 33.4 9.4 132 174-319 92-238 (361)
208 COG4099 Predicted peptidase [G 68.5 6.7 0.00015 38.5 4.1 42 484-527 160-202 (387)
209 PF13360 PQQ_2: PQQ-like domai 68.0 1.1E+02 0.0023 28.7 16.0 111 338-468 34-145 (238)
210 KOG0306 WD40-repeat-containing 67.6 2.1E+02 0.0045 32.0 16.3 141 192-349 456-612 (888)
211 PRK11138 outer membrane biogen 67.3 1.6E+02 0.0034 30.4 23.7 132 339-498 255-388 (394)
212 PF10313 DUF2415: Uncharacteri 67.2 18 0.0004 24.5 4.8 30 193-227 3-35 (43)
213 KOG0310 Conserved WD40 repeat- 67.0 1.7E+02 0.0037 30.7 21.8 224 193-452 71-302 (487)
214 COG3204 Uncharacterized protei 66.8 1.4E+02 0.003 29.6 14.9 130 174-316 71-211 (316)
215 KOG1408 WD40 repeat protein [F 66.5 35 0.00076 37.5 9.2 72 174-248 58-135 (1080)
216 TIGR03075 PQQ_enz_alc_DH PQQ-d 66.2 2E+02 0.0043 31.2 19.8 160 339-508 119-324 (527)
217 KOG2048 WD40 repeat protein [G 65.8 2.1E+02 0.0046 31.4 22.2 69 192-270 27-99 (691)
218 KOG1446 Histone H3 (Lys4) meth 64.9 1.5E+02 0.0033 29.3 28.2 246 192-472 16-271 (311)
219 KOG2111 Uncharacterized conser 64.2 14 0.0003 36.4 5.3 38 185-227 221-258 (346)
220 KOG1538 Uncharacterized conser 63.5 14 0.0003 40.0 5.6 53 190-249 12-67 (1081)
221 COG0657 Aes Esterase/lipase [L 61.3 8.4 0.00018 38.5 3.6 34 492-527 57-90 (312)
222 PLN02442 S-formylglutathione h 61.3 16 0.00035 36.0 5.5 44 483-528 15-59 (283)
223 PF05096 Glu_cyclase_2: Glutam 61.3 1.7E+02 0.0036 28.6 18.2 190 195-407 49-260 (264)
224 KOG0264 Nucleosome remodeling 61.0 1.3E+02 0.0029 31.1 11.8 118 191-314 273-403 (422)
225 KOG4547 WD40 repeat-containing 58.1 1E+02 0.0022 33.1 10.7 98 192-297 146-250 (541)
226 PF13449 Phytase-like: Esteras 57.5 2.2E+02 0.0047 28.7 19.0 172 237-408 21-251 (326)
227 KOG0284 Polyadenylation factor 57.5 41 0.00089 34.4 7.4 97 192-300 266-366 (464)
228 PF04053 Coatomer_WDAD: Coatom 57.3 2E+02 0.0042 30.5 13.0 175 193-404 35-219 (443)
229 PF12894 Apc4_WD40: Anaphase-p 57.1 21 0.00046 24.7 3.9 28 192-224 13-40 (47)
230 PRK13614 lipoprotein LpqB; Pro 56.1 1.1E+02 0.0023 33.7 10.9 77 192-269 435-518 (573)
231 PF15492 Nbas_N: Neuroblastoma 55.8 18 0.00039 35.2 4.5 33 192-229 45-77 (282)
232 KOG0265 U5 snRNP-specific prot 55.4 2.2E+02 0.0048 28.2 13.3 72 192-272 49-123 (338)
233 KOG0319 WD40-repeat-containing 55.3 3.4E+02 0.0073 30.3 14.3 54 194-253 23-81 (775)
234 KOG0307 Vesicle coat complex C 52.2 68 0.0015 37.1 8.8 97 191-298 207-310 (1049)
235 PF00400 WD40: WD domain, G-be 52.0 41 0.00089 21.2 4.6 27 192-223 13-39 (39)
236 KOG1515 Arylacetamide deacetyl 51.9 22 0.00048 36.0 4.7 37 486-525 63-99 (336)
237 KOG1916 Nuclear protein, conta 51.9 28 0.00061 39.3 5.7 42 179-224 228-269 (1283)
238 KOG0288 WD40 repeat protein Ti 50.9 1.2E+02 0.0026 31.2 9.5 100 192-302 343-449 (459)
239 KOG2394 WD40 protein DMR-N9 [G 50.0 21 0.00045 37.8 4.1 35 192-231 334-368 (636)
240 COG3490 Uncharacterized protei 49.6 1.1E+02 0.0025 30.0 8.7 80 173-253 90-179 (366)
241 PHA03098 kelch-like protein; P 48.7 3.8E+02 0.0082 28.9 14.9 163 295-472 342-520 (534)
242 COG3204 Uncharacterized protei 48.6 2.8E+02 0.0062 27.5 14.1 29 238-269 183-212 (316)
243 KOG0269 WD40 repeat-containing 48.1 3E+02 0.0065 30.8 12.5 118 192-320 178-299 (839)
244 KOG0639 Transducin-like enhanc 47.6 80 0.0017 33.3 7.8 100 192-305 594-695 (705)
245 KOG2111 Uncharacterized conser 47.5 86 0.0019 31.1 7.7 58 192-253 183-245 (346)
246 PRK13615 lipoprotein LpqB; Pro 47.0 2E+02 0.0042 31.5 11.2 79 192-271 418-504 (557)
247 KOG0290 Conserved WD40 repeat- 46.6 3E+02 0.0066 27.2 12.6 171 217-396 173-357 (364)
248 PF05096 Glu_cyclase_2: Glutam 46.5 1.9E+02 0.0041 28.2 9.9 50 371-427 38-88 (264)
249 PF07995 GSDH: Glucose / Sorbo 46.3 1.7E+02 0.0037 29.5 10.3 104 194-305 5-133 (331)
250 TIGR02821 fghA_ester_D S-formy 46.3 39 0.00085 33.0 5.5 43 485-529 12-55 (275)
251 KOG0302 Ribosome Assembly prot 45.9 1.3E+02 0.0029 30.6 8.8 117 190-317 257-380 (440)
252 KOG0295 WD40 repeat-containing 45.4 2.2E+02 0.0048 28.9 10.2 77 216-299 313-391 (406)
253 PF13449 Phytase-like: Esteras 45.4 3.3E+02 0.0072 27.3 13.5 125 193-318 87-252 (326)
254 KOG0310 Conserved WD40 repeat- 45.4 3.2E+02 0.0069 28.8 11.7 101 191-306 197-301 (487)
255 KOG1332 Vesicle coat complex C 44.4 2.8E+02 0.0061 26.7 10.3 88 212-302 181-274 (299)
256 PF04762 IKI3: IKI3 family; I 43.5 6.1E+02 0.013 29.8 24.7 98 287-388 212-315 (928)
257 TIGR03300 assembly_YfgL outer 43.5 3.7E+02 0.008 27.3 26.6 132 339-498 240-373 (377)
258 TIGR03606 non_repeat_PQQ dehyd 43.3 4.3E+02 0.0094 28.1 13.6 105 195-305 34-165 (454)
259 KOG0282 mRNA splicing factor [ 43.3 1.7E+02 0.0037 30.7 9.4 113 192-320 216-333 (503)
260 COG2936 Predicted acyl esteras 43.2 34 0.00074 37.0 4.7 36 484-523 17-52 (563)
261 PRK13613 lipoprotein LpqB; Pro 42.5 2.3E+02 0.0049 31.3 11.0 79 192-271 456-541 (599)
262 KOG1034 Transcriptional repres 42.1 3.8E+02 0.0082 27.0 14.4 93 215-315 113-211 (385)
263 TIGR03300 assembly_YfgL outer 42.0 3.9E+02 0.0084 27.1 16.8 92 309-413 75-167 (377)
264 PF03088 Str_synth: Strictosid 40.8 1.9E+02 0.004 23.1 8.3 51 214-269 34-87 (89)
265 PLN02298 hydrolase, alpha/beta 39.8 46 0.001 33.3 5.0 43 482-527 28-70 (330)
266 KOG4640 Anaphase-promoting com 39.4 47 0.001 36.0 4.9 34 194-232 66-99 (665)
267 KOG0267 Microtubule severing p 39.0 65 0.0014 35.5 5.9 53 192-250 72-127 (825)
268 KOG0270 WD40 repeat-containing 38.8 4.8E+02 0.01 27.3 16.8 149 241-408 249-406 (463)
269 PF09748 Med10: Transcription 38.5 37 0.00081 29.1 3.4 47 73-121 69-120 (128)
270 COG4880 Secreted protein conta 38.5 3.3E+02 0.0071 28.5 10.4 94 308-409 405-504 (603)
271 PF05787 DUF839: Bacterial pro 37.6 3.9E+02 0.0085 29.0 11.8 18 287-304 504-521 (524)
272 KOG0276 Vesicle coat complex C 35.9 6.3E+02 0.014 27.8 15.5 178 213-403 73-254 (794)
273 KOG1920 IkappaB kinase complex 35.5 8.4E+02 0.018 29.1 17.9 57 192-253 70-128 (1265)
274 PF10340 DUF2424: Protein of u 35.1 38 0.00083 34.7 3.4 23 501-525 108-131 (374)
275 TIGR02276 beta_rpt_yvtn 40-res 34.9 1.2E+02 0.0027 19.3 5.5 28 200-231 1-28 (42)
276 KOG0650 WD40 repeat nucleolar 34.6 2.7E+02 0.0059 30.3 9.4 112 192-318 523-638 (733)
277 PF03088 Str_synth: Strictosid 33.8 2.4E+02 0.0053 22.4 7.8 39 261-303 37-75 (89)
278 PLN00021 chlorophyllase 33.8 86 0.0019 31.5 5.7 46 479-528 17-64 (313)
279 PRK11138 outer membrane biogen 33.7 5.4E+02 0.012 26.4 15.6 66 338-414 118-183 (394)
280 KOG0316 Conserved WD40 repeat- 33.3 4.5E+02 0.0097 25.3 16.7 60 187-253 57-119 (307)
281 KOG4328 WD40 protein [Function 32.9 6.1E+02 0.013 26.7 14.6 155 192-360 236-398 (498)
282 KOG2321 WD40 repeat protein [G 32.3 88 0.0019 33.6 5.5 35 189-228 227-261 (703)
283 KOG1963 WD40 repeat protein [G 32.0 1.2E+02 0.0027 34.0 6.8 55 192-252 253-309 (792)
284 KOG4283 Transcription-coupled 31.7 5.3E+02 0.011 25.6 10.2 96 213-315 120-219 (397)
285 PF04053 Coatomer_WDAD: Coatom 31.1 3.9E+02 0.0084 28.3 10.3 62 192-265 146-219 (443)
286 KOG1523 Actin-related protein 30.7 5.7E+02 0.012 25.7 10.6 113 192-316 12-131 (361)
287 KOG1310 WD40 repeat protein [G 30.5 1.6E+02 0.0034 31.7 6.9 68 192-269 52-125 (758)
288 PF12566 DUF3748: Protein of u 30.3 45 0.00097 27.8 2.4 16 196-211 73-88 (122)
289 COG4831 Roadblock/LC7 domain [ 30.1 47 0.001 26.6 2.4 15 196-210 18-32 (109)
290 cd00312 Esterase_lipase Estera 29.8 50 0.0011 35.3 3.5 26 500-526 80-105 (493)
291 KOG0267 Microtubule severing p 29.7 52 0.0011 36.2 3.4 36 191-231 155-190 (825)
292 KOG1912 WD40 repeat protein [G 29.4 1.3E+02 0.0027 33.8 6.2 92 213-304 443-541 (1062)
293 KOG1063 RNA polymerase II elon 28.9 1.2E+02 0.0027 33.3 6.0 18 191-208 573-590 (764)
294 PLN02385 hydrolase; alpha/beta 28.7 1.2E+02 0.0027 30.5 6.1 41 483-527 58-98 (349)
295 KOG0646 WD40 repeat protein [G 28.7 7.1E+02 0.015 26.2 12.3 75 217-300 61-139 (476)
296 PLN02872 triacylglycerol lipas 28.0 1E+02 0.0022 32.1 5.3 48 481-528 39-86 (395)
297 KOG1007 WD repeat protein TSSC 27.8 4.1E+02 0.0089 26.3 8.7 100 192-305 172-279 (370)
298 KOG2041 WD40 repeat protein [G 27.4 9.3E+02 0.02 27.1 17.6 52 191-247 116-168 (1189)
299 KOG0307 Vesicle coat complex C 26.9 1.6E+02 0.0034 34.3 6.7 80 173-256 138-228 (1049)
300 PF12458 DUF3686: ATPase invol 26.6 7.5E+02 0.016 25.9 10.8 52 196-249 232-284 (448)
301 PF00135 COesterase: Carboxyle 26.6 58 0.0012 35.0 3.3 26 500-526 110-135 (535)
302 KOG4391 Predicted alpha/beta h 26.3 1.2E+02 0.0026 28.7 4.7 40 482-527 50-89 (300)
303 KOG1188 WD40 repeat protein [G 25.0 7.3E+02 0.016 25.1 10.5 108 203-319 41-153 (376)
304 KOG1920 IkappaB kinase complex 24.8 1.3E+03 0.027 27.8 19.1 52 196-248 201-254 (1265)
305 TIGR03277 methan_mark_9 putati 24.7 26 0.00056 28.6 0.1 12 17-28 1-12 (109)
306 KOG0308 Conserved WD40 repeat- 24.5 3.1E+02 0.0067 30.1 7.9 95 176-282 195-297 (735)
307 KOG1520 Predicted alkaloid syn 24.2 8E+02 0.017 25.3 10.9 17 289-305 223-239 (376)
308 COG3490 Uncharacterized protei 24.2 7.2E+02 0.016 24.7 12.9 104 196-317 41-148 (366)
309 PF05262 Borrelia_P83: Borreli 24.1 8.3E+02 0.018 26.2 11.1 95 307-407 373-471 (489)
310 KOG0265 U5 snRNP-specific prot 23.4 7.5E+02 0.016 24.7 12.5 114 191-318 175-297 (338)
311 KOG4649 PQQ (pyrrolo-quinoline 23.4 7.1E+02 0.015 24.4 18.4 135 201-344 62-212 (354)
312 KOG0321 WD40 repeat-containing 23.2 1E+03 0.022 26.3 14.4 110 196-317 57-177 (720)
313 PF13670 PepSY_2: Peptidase pr 23.0 2.8E+02 0.006 21.4 5.8 42 187-231 40-81 (83)
314 PF14655 RAB3GAP2_N: Rab3 GTPa 22.7 1.9E+02 0.0042 30.3 6.1 47 191-243 308-355 (415)
315 KOG3046 Transcription factor, 22.4 93 0.002 26.9 3.0 49 71-121 75-128 (147)
316 TIGR02604 Piru_Ver_Nterm putat 21.9 8.5E+02 0.018 24.8 15.6 58 239-304 75-142 (367)
317 KOG4532 WD40-like repeat conta 21.4 7.9E+02 0.017 24.2 12.2 18 193-210 161-178 (344)
318 COG5497 Predicted secreted pro 21.3 1.9E+02 0.0042 27.2 5.1 39 192-230 23-65 (228)
319 PF15525 DUF4652: Domain of un 20.8 6.7E+02 0.015 23.1 11.9 85 195-281 62-158 (200)
320 PF07224 Chlorophyllase: Chlor 20.5 1.6E+02 0.0034 28.8 4.4 44 479-526 9-56 (307)
321 TIGR02604 Piru_Ver_Nterm putat 20.2 3.5E+02 0.0076 27.6 7.5 61 191-253 124-201 (367)
No 1
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-94 Score=732.64 Aligned_cols=458 Identities=44% Similarity=0.773 Sum_probs=434.4
Q ss_pred CCCCCCcccceEEeecCceeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHhhcccCCCCCCceE
Q 009441 50 PSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFR 129 (534)
Q Consensus 50 ~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~ 129 (534)
+.||+|+|+|+..+.||.+++|+|+||||++|.+|+|++||+|||+|+++.|+++++||++|++||++|+++++.|+|.+
T Consensus 4 p~pP~a~k~~~~~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp~~ 83 (682)
T COG1770 4 PLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPYR 83 (682)
T ss_pred CCCCCccccceeeeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEE
Q 009441 130 QGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAE 209 (534)
Q Consensus 130 ~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~ 209 (534)
.|+|+||.|...|++|+++||.+..++ .+||+|||+|+++++++|++|+.+++|||+++|||++
T Consensus 84 ~~~~~Yy~r~~~g~~y~~~~R~~~~g~----------------~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~ 147 (682)
T COG1770 84 KGPYEYYSRTEEGKEYPIYCRQPDEGG----------------EGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSV 147 (682)
T ss_pred cCCeeEEEEecCCCcceeEEeccCCCC----------------CceeEeecchhccCcccceeeeeeeeCCCCceEEEEE
Confidence 999999999999999999999776542 2589999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEE
Q 009441 210 DTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSL 288 (534)
Q Consensus 210 d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v 288 (534)
|..|+|+++|+|+|+++|+.+.+.+.++.++++|++|+ +|||++.++..||.+||+|.+|+++..|++||+|+|+.|++
T Consensus 148 D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~ 227 (682)
T COG1770 148 DVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFL 227 (682)
T ss_pred ecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEE
Confidence 99999999999999999999999899887789999999 99999999999999999999999888999999999999999
Q ss_pred EEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-ceeEeeecccceeEEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCC
Q 009441 289 GLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSE 367 (534)
Q Consensus 289 ~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~ 367 (534)
++..|.+.+||+|..++..++|+++++.+.+. .++++.+|..|++|+++|.++.|||+||.+ ++|++|+++++ .+..
T Consensus 228 ~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~-gknf~l~~ap~-~~~~ 305 (682)
T COG1770 228 SVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNAD-GKNFKLVRAPV-SADK 305 (682)
T ss_pred EeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCC-CcceEEEEccC-CCCh
Confidence 99999999999999999999999999999987 789999999999999999999999999984 59999999999 6666
Q ss_pred ceE--EecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceeeecCceeeEe-CCCCccCccEE
Q 009441 368 TTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSID-PSESVFSSRIL 444 (534)
Q Consensus 368 ~~~--li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~-~~~~~~~~~~l 444 (534)
.+| +||+.++..|++|.+++++|++.++++|.++|++.+..+ |. .+.|.|++.+++.+ ..|.+++++.+
T Consensus 306 ~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~-~~-------~~~i~f~~~ay~~~l~~~~e~~s~~l 377 (682)
T COG1770 306 SNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKT-GE-------ERGIAFDDEAYSAGLSGNPEFDSDRL 377 (682)
T ss_pred hcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCC-Cc-------eeeEEecchhhhccccCCCCCCCccE
Confidence 778 999999999999999999999999999999999999875 44 24689999887765 47888999999
Q ss_pred EEEeccCCCCCeEEEEECCCCcEEEEEEccccCCCCCCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcC
Q 009441 445 RFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG 524 (534)
Q Consensus 445 ~~~~sS~~~P~~~y~~d~~~~~~~~~~~~~~~~~~d~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYG 524 (534)
+|+|+|+++|.++|.||+.+++.+++++++++++|++++|+++++|+++.||++||++|+|+|+. ++++++||||||||
T Consensus 378 R~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~-~~~g~~p~lLygYG 456 (682)
T COG1770 378 RYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT-KLDGSAPLLLYGYG 456 (682)
T ss_pred EEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc-CCCCCCcEEEEEec
Confidence 99999999999999999999999999999998889999999999999999999999999999998 89999999999999
Q ss_pred CCCcCcccCC
Q 009441 525 SYEVIFFFLF 534 (534)
Q Consensus 525 gyg~~~~p~f 534 (534)
+||+++.|+|
T Consensus 457 aYG~s~~p~F 466 (682)
T COG1770 457 AYGISMDPSF 466 (682)
T ss_pred cccccCCcCc
Confidence 9999999998
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=3.6e-74 Score=629.10 Aligned_cols=456 Identities=34% Similarity=0.562 Sum_probs=398.7
Q ss_pred CCCCcccceEEeecCceeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHhhcccCCCCCCceEeC
Q 009441 52 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQG 131 (534)
Q Consensus 52 ~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g 131 (534)
||.|+++|+++++||+++.|||+||||.+|++|+|++||++||+||+++|+++.++|++|++||+++++.++.++|.+.|
T Consensus 2 pP~a~~~~~~~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g 81 (686)
T PRK10115 2 LPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKN 81 (686)
T ss_pred cCCCCCCCeeEEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEEEC
Confidence 89999999999999999999999999986779999999999999999999998899999999999999999999999999
Q ss_pred CEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcC
Q 009441 132 SYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDT 211 (534)
Q Consensus 132 ~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~ 211 (534)
+|+||.++..|++++++||++..++ ..++||+|||+|++++++++++++.+.|||||++|||+.|.
T Consensus 82 ~~~y~~~~~~g~~~~~~~r~~~~~~--------------~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~ 147 (686)
T PRK10115 82 GYRYRHIYEPGCEYAIYQRQSAFSE--------------EWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDF 147 (686)
T ss_pred CEEEEEEEcCCCccEEEEEecCCCC--------------CCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecC
Confidence 9999999999999999999874321 01358999999999888899999999999999999999999
Q ss_pred CCCeEEEEEEEECCCCCeeccccCCccceeEEccCC-eEEEEEECCC-CCCceEEEeecCCCCCCceEeeeecCCceEEE
Q 009441 212 KGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEI-LRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 289 (534)
Q Consensus 212 ~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg-~l~Y~~~d~~-~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~ 289 (534)
+|+|+++|+|+|+++|+.+.+.++++...++|++|+ +|||++.++. .++.+||+|++||++++|++||++.++.+++.
T Consensus 148 ~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~ 227 (686)
T PRK10115 148 LSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVS 227 (686)
T ss_pred CCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEE
Confidence 999999999999999998877787775569999999 9999998754 68899999999999888999999888878887
Q ss_pred EEEcCCCcEEEEEecCcceeEEEEEeCCCCC-ceeEeeecccceeEEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCc
Q 009441 290 LQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET 368 (534)
Q Consensus 290 ~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~ 368 (534)
+..+.|++++++.+++..++++++++++.+. +++++.++..+..|.+.+.++.||+.||. ++++++|+++++.++ .
T Consensus 228 ~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~-~~~~~~l~~~~~~~~--~ 304 (686)
T PRK10115 228 LHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNR-HGKNFGLYRTRVRDE--Q 304 (686)
T ss_pred EEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcC-CCCCceEEEecCCCc--c
Confidence 7888999999999888888899998864433 46777888888888888889999999997 689999999998753 3
Q ss_pred eE--EecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceeeecCceee-EeCCCCccCccEEE
Q 009441 369 TV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYS-IDPSESVFSSRILR 445 (534)
Q Consensus 369 ~~--li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~-i~~~~~~~~~~~l~ 445 (534)
+| ++++.++..|+++.+++++|++..+++|.++|+++++. +..+ ..+.++++.+. ....+.+++++.++
T Consensus 305 ~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~--~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (686)
T PRK10115 305 QWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRK--TREV------IGIAFDDPAYVTWIAYNPEPETSRLR 376 (686)
T ss_pred cCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCC--CCce------EEecCCCCceEeeecccCCCCCceEE
Confidence 46 88887777899999999999999999999999999876 3321 24444443322 22245557778999
Q ss_pred EEeccCCCCCeEEEEECCCCcEEEEEEccccCCCCCCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCC
Q 009441 446 FHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS 525 (534)
Q Consensus 446 ~~~sS~~~P~~~y~~d~~~~~~~~~~~~~~~~~~d~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGg 525 (534)
+.++|+++|+++|.||+++++.++++.... +.+++..+++|+++++|+||++||+||+++++. ..++++|+|||+|||
T Consensus 377 ~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~-~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~-~~~~~~P~ll~~hGg 454 (686)
T PRK10115 377 YGYSSMTTPDTLFELDMDTGERRVLKQTEV-PGFDAANYRSEHLWITARDGVEVPVSLVYHRKH-FRKGHNPLLVYGYGS 454 (686)
T ss_pred EEEecCCCCCEEEEEECCCCcEEEEEecCC-CCcCccccEEEEEEEECCCCCEEEEEEEEECCC-CCCCCCCEEEEEECC
Confidence 999999999999999999998888887554 358888999999999999999999999999987 667889999999999
Q ss_pred CCcCcccCC
Q 009441 526 YEVIFFFLF 534 (534)
Q Consensus 526 yg~~~~p~f 534 (534)
||+++.|.|
T Consensus 455 ~~~~~~p~f 463 (686)
T PRK10115 455 YGASIDADF 463 (686)
T ss_pred CCCCCCCCc
Confidence 999999987
No 3
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-74 Score=584.64 Aligned_cols=465 Identities=35% Similarity=0.565 Sum_probs=385.8
Q ss_pred CCCCCCCcc-cceEEeecCceeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHhhcccCCCCCCc
Q 009441 49 LPSPPVAKK-VEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAP 127 (534)
Q Consensus 49 ~~~~P~a~~-~~~~~~~hG~~~~DpY~WLed~~~~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p 127 (534)
++.||+++| +++++++||+++.|||+||||++ +.++.+|+++||+||+++|++....+ +|+.||+.|++++..++|
T Consensus 3 ~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d--~~~~~~fv~~en~~t~~vl~~~e~~~-kl~~em~~~i~ye~~~~p 79 (712)
T KOG2237|consen 3 PLQYPVARKDESVAEDFHGVTVEDPYRWLEDPD--DTEMKEFVEAENKYTDAVLEDTETKE-KLFSEMTKRIDYEIITPP 79 (712)
T ss_pred CCCCCCcccccchhhhcCCceecCcchhhcCCc--HHHHHHHHHHhhhhhHHHHhccHHHH-HHHHHhhhccCccccCCc
Confidence 344666666 66779999999999999999999 99999999999999999999997655 999999999999999999
Q ss_pred eEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecchhcCCCCcEEEEEEEECCCCCEEEE
Q 009441 128 FRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAY 207 (534)
Q Consensus 128 ~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~ 207 (534)
.++|+|+||.++.++++++++||+..+.+.. .++.+.......+|+||.|++++.++|+..+-.+.|||+++|||
T Consensus 80 ~r~G~~yyY~~n~~lkq~vl~~rr~~~~e~~-----~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~ 154 (712)
T KOG2237|consen 80 LRWGPWYYYFYNTGLKQYVLYCRRLLEKEEE-----VFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAY 154 (712)
T ss_pred cccCCEEEEEEcCCceehhHHHHhhhhcccc-----eecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEE
Confidence 9999999999999999999999987633211 11222222245689999999999889999999999999999999
Q ss_pred EEcCCCCeEEEEEEEECCCCCeeccc-cCCccceeEEcc-CC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCC
Q 009441 208 AEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAG-NE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD 284 (534)
Q Consensus 208 ~~d~~G~E~~~l~v~dl~tg~~~~~~-i~~~~~~~~Ws~-Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~ 284 (534)
..+..|+|.+++ |.++..+++.... .+++ +..+|.. || .++|.+.++..|+++||+|.+|+.+++|+++|+|.|+
T Consensus 155 ~~~~~~~e~~~~-v~~~~~~~~~~~~~~~g~-~y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~ 232 (712)
T KOG2237|consen 155 TKDTEGKELFTV-VIDVKFSGPVWTHDGKGV-SYLAWAKQDGEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDE 232 (712)
T ss_pred EEcCCCCcccee-eeeeccCCceeeccCCce-EeeeecccCCceeeeeeeccccCcceEEEEecccCCCcceEEEecCCC
Confidence 999999999999 9999988876542 3344 4599987 78 8899999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCCcEEEEEecCcce---eEEEEEeCCCCC-ceeE-eeecccceeEEEeeeC------CEEEEEEcCCCCC
Q 009441 285 IYSLGLQASESKKFLFIASESKIT---RFVFYLDVSKPE-ELRV-LTPRVVGVDTAASHRG------NHFFITRRSDELF 353 (534)
Q Consensus 285 ~~~v~~~~S~Dg~~l~i~~~~~~~---~ev~~~d~~~~~-~~~~-l~~~~~g~~~~v~~~g------~~lyi~tn~~~~~ 353 (534)
.+++.+..++|+++.+|.+.+.+. +.||.+|+..+. .++. +.++..+++++++|.+ ..+|++||. ++|
T Consensus 233 ~~~vf~~~~kD~~~~~i~si~~t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~-~~p 311 (712)
T KOG2237|consen 233 PKHVFISETKDSGFYTINSISETCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFVEHYDFITNEGTEFYFLTNK-DAP 311 (712)
T ss_pred CeEEEEEEEecCceEEEEEeeccCCccceEEEEecccccCCcchheeeccchhhhhhhhhhheeccCcceeeeccC-CCC
Confidence 888888888888888887765544 599999998765 5563 8888888887766655 889999998 799
Q ss_pred ccEEEEEeCCCCCCceE--EecCCCCceeeeEEEeCCEEEEEEeeCCeeEEE-EEECCCCCCcccccCCCceeeecCcee
Q 009441 354 NSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKIT-TYRLPAVGEPLKSLQGGKSVEFIDPVY 430 (534)
Q Consensus 354 ~~~L~~~~~~~~~~~~~--li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~-~~~l~~~g~~~~~~~~~~~i~lp~~~~ 430 (534)
+++++++++..+...+| ++++.+...|++++++++++++.........+. +.++-. |.. ...||.+.+
T Consensus 312 ~y~l~r~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l~-g~~--------~~~fpLpv~ 382 (712)
T KOG2237|consen 312 NYYLLRIDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDLLD-GSL--------LRSFPLPVG 382 (712)
T ss_pred ceeEEeeeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCchhhcccccccc-Cce--------eeeecCCCC
Confidence 99999999988876778 888887778999999988776665555544433 222222 332 233555566
Q ss_pred eEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEE--EEEEc-cccCCCCCCCcEEEEEEEEcCCCceecEEEEEeC
Q 009441 431 SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV--LKKIE-TVLGGFDTNNYFTERKWASASDGTQIPICIVYRK 507 (534)
Q Consensus 431 ~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~--~~~~~-~~~~~~d~~~~~~e~v~~~S~DG~~VP~~lv~~k 507 (534)
++.+...++++++++|.++|+.+|+.+|.||+.+++.+ +.... .+.++|+.++|+++|++|+|+||++|||+|+|+|
T Consensus 383 sv~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk 462 (712)
T KOG2237|consen 383 SVSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKK 462 (712)
T ss_pred cccccccCCCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEec
Confidence 77666678999999999999999999999999998542 22221 2335899999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEcCCCCcCcccCC
Q 009441 508 NLVKLDGSDPLLLYGYGSYEVIFFFLF 534 (534)
Q Consensus 508 ~~~~~~~~~P~lL~gYGgyg~~~~p~f 534 (534)
+. +.+|+.|+|||||||||++|.|+|
T Consensus 463 ~~-k~dg~~P~LLygYGay~isl~p~f 488 (712)
T KOG2237|consen 463 DI-KLDGSKPLLLYGYGAYGISLDPSF 488 (712)
T ss_pred hh-hhcCCCceEEEEecccceeecccc
Confidence 99 999999999999999999999998
No 4
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=100.00 E-value=4e-67 Score=549.57 Aligned_cols=396 Identities=36% Similarity=0.622 Sum_probs=333.3
Q ss_pred CCCCcccceEEeecCceeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHhhcccCCCCCCceEeC
Q 009441 52 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQG 131 (534)
Q Consensus 52 ~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g 131 (534)
||++++.++++++||+++.|||+||||.+ +|+|++||++||+||+++|+++++++++|++||++++..+..++|.+.|
T Consensus 1 P~~~~~~~~~~~~hg~~~~DpY~WLed~~--~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g 78 (414)
T PF02897_consen 1 PPTARKPPVVETLHGVTITDPYRWLEDDD--SPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRG 78 (414)
T ss_dssp S-TTS-TTSEEEETTEEEE-TTGGGGSTT--SHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEET
T ss_pred CCCCCCCCeeeecCCCEeecCchhhcCCC--CHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEEC
Confidence 56777777999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcC
Q 009441 132 SYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDT 211 (534)
Q Consensus 132 ~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~ 211 (534)
+|+||.++.++++++++||+..... +...+|+|||+|+++++.+++.++.+.+||||++|||++|.
T Consensus 79 ~~~y~~~~~~~~~~~~~~r~~~~~~--------------~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~ 144 (414)
T PF02897_consen 79 GYYYYSRNQGGKNYPVLYRRKTDEE--------------DGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSD 144 (414)
T ss_dssp TEEEEEEE-SS-SS-EEEEEETTS---------------TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEE
T ss_pred CeEEEEEEcCCCceEEEEEEecccC--------------CCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecC
Confidence 9999999999999999999986410 01236999999999986568899999999999999999999
Q ss_pred CCCeEEEEEEEECCCCCeeccccCCcc-ceeEEccCC-eEEEEEECCCCC------CceEEEeecCCCCCCceEeeeecC
Q 009441 212 KGDEIYTVYVIDIETGTPVGKPLVGVT-ASVEWAGNE-ALVYITMDEILR------PDKAWLHKLEADQSNDICLYHEKD 283 (534)
Q Consensus 212 ~G~E~~~l~v~dl~tg~~~~~~i~~~~-~~~~Ws~Dg-~l~Y~~~d~~~r------~~~v~~~~lgt~~~~d~lv~~e~d 283 (534)
+|+|+++|+|+|+++|+.+.+.+++.. .+++|++|| .|||++.++..+ +++||+|++|+++++|++||++++
T Consensus 145 ~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~ 224 (414)
T PF02897_consen 145 GGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPD 224 (414)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TT
T ss_pred CCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecC
Confidence 999999999999999999988777764 349999999 999999988777 899999999999988999999998
Q ss_pred Cce-EEEEEEcCCCcEEEEEecCcce-eEEEEEeCCCC---C-ceeEeeecccceeEEEeeeCCEEEEEEcCCCCCccEE
Q 009441 284 DIY-SLGLQASESKKFLFIASESKIT-RFVFYLDVSKP---E-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSEL 357 (534)
Q Consensus 284 ~~~-~v~~~~S~Dg~~l~i~~~~~~~-~ev~~~d~~~~---~-~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~~~~~~L 357 (534)
+.+ ++++.+|+|++||+|.+++..+ +++|++++... . .++++.++.++..|.+++.|+.||++||. ++++++|
T Consensus 225 ~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~-~a~~~~l 303 (414)
T PF02897_consen 225 EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTND-DAPNGRL 303 (414)
T ss_dssp CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-T-T-TT-EE
T ss_pred CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCC-CCCCcEE
Confidence 888 8999999999999999988777 99999999875 3 68999999999889999999999999997 7999999
Q ss_pred EEEeCCCCCCceE---EecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceeeecCceeeEeC
Q 009441 358 LACPVDNTSETTV---LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDP 434 (534)
Q Consensus 358 ~~~~~~~~~~~~~---li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~~ 434 (534)
++++++++....| ++++.+++.|+++.+++++||+.++++|.++|.++++.. ++. ...+.+|..+ ++.+
T Consensus 304 ~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~------~~~~~~p~~g-~v~~ 375 (414)
T PF02897_consen 304 VAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD-GKE------SREIPLPEAG-SVSG 375 (414)
T ss_dssp EEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEE------EEEEESSSSS-EEEE
T ss_pred EEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC-CcE------EeeecCCcce-EEec
Confidence 9999998775445 777777788999999999999999999999999999982 332 2467777654 5566
Q ss_pred CCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEEE
Q 009441 435 SESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI 472 (534)
Q Consensus 435 ~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~~ 472 (534)
.+.+++++.++|.++|+++|+++|.||+++++.+++++
T Consensus 376 ~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 376 VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 67788999999999999999999999999999998876
No 5
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-49 Score=398.62 Aligned_cols=421 Identities=22% Similarity=0.281 Sum_probs=324.1
Q ss_pred eecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHhhcccCCCCCCceEeCCEEEEEEecCCceEEEE
Q 009441 69 RVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQH 148 (534)
Q Consensus 69 ~~DpY~WLed~~~~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~ 148 (534)
..|||+||||.+ ++|+++|+++||+-|..+|... +.++.+.+++.+.+..++...|...|+++|...++....+.++
T Consensus 2 ~~DPy~wlEd~~--~~eal~wv~~~N~~t~~~L~~~-~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~~~p~Glw 78 (648)
T COG1505 2 VPDPYRWLEDLD--SAEALKWVEAQNAKTREFLGED-SARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDALYPRGLY 78 (648)
T ss_pred CCCcchhhhcCC--cHHHHHHHHhhhhHHHHHhhcc-hhhHHHHHHHHHHhhccccCcceeccceeEEeeccccCcceeE
Confidence 479999999999 9999999999999999999998 5788899999999998888899999999999999888877777
Q ss_pred EEEecCCCCCCCCccccCCCCCCCCCceEEeecchhcCCCC-cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 009441 149 CRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRG-FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG 227 (534)
Q Consensus 149 ~r~~~~~~~~~~~~~~~~~~~~~~~~eevllD~n~~a~~~~-~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg 227 (534)
.|..... . -...++++||+|+++|++..| .+.+++.+.+||+++++|+.+.+|++...++++|++||
T Consensus 79 r~ttl~s------y------rs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~ 146 (648)
T COG1505 79 RRTTLET------Y------RSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETG 146 (648)
T ss_pred Eeeccee------e------cccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEeccc
Confidence 6654321 0 012357899999999986543 67888889999999999999999999999999999999
Q ss_pred CeeccccCCccceeEEccCCeEEEEEECC------CCCC---ceEEEeecCCCCCCceEeeeecC-CceEEEEEEcCCCc
Q 009441 228 TPVGKPLVGVTASVEWAGNEALVYITMDE------ILRP---DKAWLHKLEADQSNDICLYHEKD-DIYSLGLQASESKK 297 (534)
Q Consensus 228 ~~~~~~i~~~~~~~~Ws~Dg~l~Y~~~d~------~~r~---~~v~~~~lgt~~~~d~lv~~e~d-~~~~v~~~~S~Dg~ 297 (534)
+.+.+. .-.+.++.|.++++++|.+... .+.+ .++++++++++++.|++|+...+ ..+...+.++.|++
T Consensus 147 ~fv~~~-~f~~~~~~wld~d~~~~~~~~~~~e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~ 225 (648)
T COG1505 147 EFVEEE-GFKFPGISWLDDDGVFVSRYWRPKEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGD 225 (648)
T ss_pred ccccCC-CccccceEEecCCCEEEecccCCcccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccc
Confidence 887754 1124459999888788887532 2223 24667788889889999987542 12234456777787
Q ss_pred EEEEEecCc--ceeEEEEEeCCC-CCceeEe-e-ecccceeEE-EeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEE
Q 009441 298 FLFIASESK--ITRFVFYLDVSK-PEELRVL-T-PRVVGVDTA-ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 371 (534)
Q Consensus 298 ~l~i~~~~~--~~~ev~~~d~~~-~~~~~~l-~-~~~~g~~~~-v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~l 371 (534)
+++....-. ....+++-...+ +..+..+ . .+ ..+. ++++.+.+|+++.. ..+.++.+. .+
T Consensus 226 ~f~~~~~~~~~~~~~~~l~~p~~~~~~~~~l~~~~r---~dw~~~~~~~g~l~l~~~e-~~~~g~~~a----------~~ 291 (648)
T COG1505 226 FFMLSLWLGTSGKGLIKLGLPDKVGYEWGKLVNTLR---ADWTFADVDYGLLYLLTDE-DLELGKVIA----------EF 291 (648)
T ss_pred hhhheeeEeccCCCceeccCCccccceeeeeeEeec---ccccccCcccceEEEEehh-ccccCceeE----------Ee
Confidence 766544221 123444322222 1111111 1 11 1122 33445777777775 455555544 14
Q ss_pred ecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceeeecCceeeEeCCCCccCccEEEEEeccC
Q 009441 372 IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSL 451 (534)
Q Consensus 372 i~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~ 451 (534)
+|+. ...|+.+.+.++++++...+|.++++.++.+. |.. .+++.+|..+ ++.+++.+.+++.+++.++||
T Consensus 292 ~P~~-~~~le~v~tt~~~~va~~l~nv~~~l~v~~~~--g~~------~~~v~l~~~g-a~~~~~~~~~g~ev~l~~t~F 361 (648)
T COG1505 292 IPEE-EQSLEQVVTTKDKLVAGTLDNVSGRLEVYDLK--GER------IEEVELPPPG-ALGMGSADKDGDEVFLAFTSF 361 (648)
T ss_pred cCCc-ccceeeeEEEcCeEEeeeehhccceEEEeccC--ceE------eeecccCCcc-ceeeccCCCCCcEEEEEeecc
Confidence 4544 45799999999999999999999999999887 653 2467787765 555556778899999999999
Q ss_pred CCCCeEEEEECCCCcEEEEEEccccCCCCCCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCcCcc
Q 009441 452 RTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEVIFF 531 (534)
Q Consensus 452 ~~P~~~y~~d~~~~~~~~~~~~~~~~~~d~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~~~~ 531 (534)
++|+++|+++..+++++.++.++. .||+++|++|+.+++|+|||+||+|||+ |+. +.+ ++|+|||+||||+++++
T Consensus 362 ~tP~~~~r~~~~~~eLe~ik~~p~--~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~-~~d-~~pTll~aYGGF~vslt 436 (648)
T COG1505 362 TTPSTLYRLDLFGGELEVIREQPV--QFDADNYEVEQFFATSKDGTRIPYFIVR-KGA-KKD-ENPTLLYAYGGFNISLT 436 (648)
T ss_pred cCCCceEEEecCCceehhhhhccC--CcCccCceEEEEEEEcCCCccccEEEEe-cCC-cCC-CCceEEEeccccccccC
Confidence 999999999999999999887665 7999999999999999999999999999 998 888 99999999999999999
Q ss_pred cCC
Q 009441 532 FLF 534 (534)
Q Consensus 532 p~f 534 (534)
|+|
T Consensus 437 P~f 439 (648)
T COG1505 437 PRF 439 (648)
T ss_pred Ccc
Confidence 998
No 6
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.64 E-value=3.7e-14 Score=148.95 Aligned_cols=277 Identities=13% Similarity=0.055 Sum_probs=178.1
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHhhcccCCCCCCceEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCC
Q 009441 93 ENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172 (534)
Q Consensus 93 en~~t~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 172 (534)
|+.++.+++... +.++.+..++.+.+.....+.|...+..++|.+..+++....++.....+
T Consensus 118 ~~~~~~~~~~~~-~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------------- 179 (417)
T TIGR02800 118 LQLLGKQYTVTA-SQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDG----------------- 179 (417)
T ss_pred EEeeeeeEEcCH-HHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCC-----------------
Confidence 455556666554 45556666665555544456677778877777766544455555544332
Q ss_pred CCceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEE
Q 009441 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALV 250 (534)
Q Consensus 173 ~~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~ 250 (534)
+..+.|++.+. .+..+.|||||++|||+...+|. .+|+++|+++|+.... ...+....++|+||| .|+
T Consensus 180 ~~~~~l~~~~~--------~~~~p~~Spdg~~la~~~~~~~~--~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 180 ANPQTITRSRE--------PILSPAWSPDGQKLAYVSFESGK--PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred CCCEEeecCCC--------ceecccCCCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 34577777442 23456899999999999876554 7899999999865432 233433458999999 888
Q ss_pred EEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccc
Q 009441 251 YITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330 (534)
Q Consensus 251 Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~ 330 (534)
|+.... ...+||.++++++.. ..+... ........+++||++|++.+.......||++++.+++ .+.+.....
T Consensus 250 ~~~~~~--~~~~i~~~d~~~~~~--~~l~~~--~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~ 322 (417)
T TIGR02800 250 VSLSKD--GNPDIYVMDLDGKQL--TRLTNG--PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGG 322 (417)
T ss_pred EEECCC--CCccEEEEECCCCCE--EECCCC--CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCC
Confidence 875322 235799999987642 222221 1222345789999999988766556689999988764 555553322
Q ss_pred c-eeEEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEE--eCCEEEEEEeeCCeeEEEEEEC
Q 009441 331 G-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREGGLQKITTYRL 407 (534)
Q Consensus 331 g-~~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~~l 407 (534)
. ....++++|+.+++.... .++++|+.+++.+.. .. ++++... .+...+ .+.+|++....+|...+++++.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~--~~~~~i~~~d~~~~~-~~-~l~~~~~--~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHRE--GGGFNIAVMDLDGGG-ER-VLTDTGL--DESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CccCeEECCCCCEEEEEEcc--CCceEEEEEeCCCCC-eE-EccCCCC--CCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 2 123477888887777653 467899999986522 11 4443322 233334 3468888888888888999887
Q ss_pred CCCCC
Q 009441 408 PAVGE 412 (534)
Q Consensus 408 ~~~g~ 412 (534)
+ |+
T Consensus 397 ~--g~ 399 (417)
T TIGR02800 397 D--GR 399 (417)
T ss_pred C--Cc
Confidence 7 55
No 7
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.7e-11 Score=129.49 Aligned_cols=203 Identities=11% Similarity=0.115 Sum_probs=137.8
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
+..+.|||||++|||+.+.+| ..+|+++|+.+|+.... ..++....++|+||| .|+|+...+ ...+||.+++.+
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~--g~~~Iy~~dl~t 295 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD--GQPEIYVVDIAT 295 (448)
T ss_pred ccCceECCCCCEEEEEEecCC--CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC--CCeEEEEEECCC
Confidence 456799999999999988655 47899999999976432 234444468999999 888876432 235799999977
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeec-ccceeEEEeeeCCEEEEEEcC
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVDTAASHRGNHFFITRRS 349 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~-~~g~~~~v~~~g~~lyi~tn~ 349 (534)
+.. +.+... ......+.+|+||++|++.+.......+|+++++++. .+.++.. .......++++|+.+++.+..
T Consensus 296 g~~--~~lt~~--~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 296 KAL--TRITRH--RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VSRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CCe--EECccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 632 223221 1223357899999999998766666799999998765 5555421 111122478899999887764
Q ss_pred CCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
...++|+.+++++... . .+.... ..+...+. +..|++....+|...|++++.+ |.
T Consensus 371 --~g~~~I~~~dl~~g~~-~-~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~--G~ 427 (448)
T PRK04792 371 --NGKFNIARQDLETGAM-Q-VLTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID--GR 427 (448)
T ss_pred --CCceEEEEEECCCCCe-E-EccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECC--CC
Confidence 3567899999876432 1 232221 11223343 4578888888888899999987 65
No 8
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.9e-11 Score=125.93 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=136.9
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
+..++|||||++|||+...+|. .+|+++|+++|+.... ..++....+.|+||| .++|+.... ...+||.+++.+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~--~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~d~~~ 279 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGR--PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG--GNTDIYTMDLRS 279 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCC--CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC--CCceEEEEECCC
Confidence 5678999999999999887664 7999999999976432 233333458999999 888886432 235799999876
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccce-eEEEeeeCCEEEEEEcC
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRS 349 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~-~~~v~~~g~~lyi~tn~ 349 (534)
+.. ..+... +.....+.+||||++|++.+......++|+++++++. .+.+....... ...++++|+.+++.+..
T Consensus 280 ~~~--~~Lt~~--~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 280 GTT--TRLTDS--PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred Cce--EEccCC--CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 532 233321 2233347899999999988766666789999988764 56565432111 23478999999988764
Q ss_pred CCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCe---eEEEEEECC
Q 009441 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGL---QKITTYRLP 408 (534)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~---~~l~~~~l~ 408 (534)
...++|+.++++... . .++.... ..+.+.|.+ +.|++.....+. .+|++++++
T Consensus 355 --~~~~~i~~~d~~~~~-~-~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 355 --GGQFSIGVMKPDGSG-E-RILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred --CCceEEEEEECCCCc-e-EeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 345789988875422 1 1333322 356667764 467776665554 689999997
No 9
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.2e-10 Score=122.09 Aligned_cols=206 Identities=12% Similarity=0.024 Sum_probs=131.7
Q ss_pred EEEEECCCCCE--EEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEe--e
Q 009441 194 GCFQVSPDNKL--VAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH--K 267 (534)
Q Consensus 194 ~~~~~SPDG~~--LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~--~ 267 (534)
..++|||||+. +||....+|. .+|+++++++|+.... ..++....+.|+||| .|+|+.... +. ..+|.+ +
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~--~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-g~-~di~~~~~~ 263 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGV--PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRY-GN-PDLFIQSFS 263 (428)
T ss_pred ccceEccCCCceEEEEEEccCCC--ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCC-CC-cceeEEEee
Confidence 46799999988 5557776664 7999999999976442 234444458999999 999987422 22 246654 3
Q ss_pred cCCCC-CCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-ceeEeeecccc-eeEEEeeeCCEEE
Q 009441 268 LEADQ-SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG-VDTAASHRGNHFF 344 (534)
Q Consensus 268 lgt~~-~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~~~l~~~~~g-~~~~v~~~g~~ly 344 (534)
+.++. ...+.+.... ......+.+||||++|++.+......++|+++++... ..+.++..... ....++++|+.|+
T Consensus 264 ~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 264 LETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred cccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence 33211 1223343321 1122346899999999988765556689999875422 24555443221 1234889999999
Q ss_pred EEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECCC
Q 009441 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 345 i~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~ 409 (534)
+.+... ...+|+.+++++... . .+.... .....+.|.+ +.|++....++...|++++++.
T Consensus 343 f~~~~~--g~~~I~v~dl~~g~~-~-~Lt~~~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 343 FCSVIK--GVRQICVYDLATGRD-Y-QLTTSP-ENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEEcCC--CCcEEEEEECCCCCe-E-EccCCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 988753 357899999876432 2 233222 2355677764 4677777777788999999984
No 10
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.8e-10 Score=121.56 Aligned_cols=203 Identities=14% Similarity=0.166 Sum_probs=136.7
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
+..+.|||||++|||+...+| ..+|+++|+++|+.... ..++....+.|+||| .++|+.... ...+||..++.+
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~--g~~~Iy~~d~~~ 276 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQK--RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD--GNPEIYVMDLAS 276 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCC--CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC--CCceEEEEECCC
Confidence 566799999999999987654 46899999999976442 223333458999999 888876432 235899999876
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccc-ceeEEEeeeCCEEEEEEcC
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRS 349 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~-g~~~~v~~~g~~lyi~tn~ 349 (534)
+. ...+... ......+.+|+||+.|++.+.......||++++.+++ .+.+..... .....++++|+.+++.+..
T Consensus 277 ~~--~~~lt~~--~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 277 RQ--LSRVTNH--PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTFVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred CC--eEEcccC--CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccceEECCCCCEEEEEEcc
Confidence 63 2233321 2223346789999999998766666789999998765 554543211 1122478899999988764
Q ss_pred CCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
+ ..++|+.+++++... + .+.+... -+...+. +..|++...++|..+|++++++ |.
T Consensus 352 ~--~~~~l~~~dl~tg~~-~-~lt~~~~--~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~--g~ 408 (430)
T PRK00178 352 D--GNFHVAAQDLQRGSV-R-ILTDTSL--DESPSVAPNGTMLIYATRQQGRGVLMLVSIN--GR 408 (430)
T ss_pred C--CceEEEEEECCCCCE-E-EccCCCC--CCCceECCCCCEEEEEEecCCceEEEEEECC--CC
Confidence 2 367899999875432 2 2332211 1233444 4577888888888899999987 55
No 11
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.6e-10 Score=117.98 Aligned_cols=204 Identities=10% Similarity=0.002 Sum_probs=137.1
Q ss_pred EEEEEECCCCCE-EEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecC
Q 009441 193 VGCFQVSPDNKL-VAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 193 l~~~~~SPDG~~-LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.....|||||+. ++|+...++ ..+|+++|+++|+.... ..++......|+||| .++|+.... . ..+||..++.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~--~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~-g-~~~Iy~~dl~ 265 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGER--KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK-G-QPDIYLYDTN 265 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCC--CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC-C-CcEEEEEECC
Confidence 346799999997 666555433 35999999999986543 223433457899999 898887432 2 3589999986
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcC
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 349 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~ 349 (534)
++. .+.+... +.......+||||+.|++.++.....+||++++++++ .+.++.... ....++++|+.+++.++.
T Consensus 266 ~g~--~~~LT~~--~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt~~g~-~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 266 TKT--LTQITNY--PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVVFHGK-NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCc--EEEcccC--CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCccCCC-cCceECCCCCEEEEEEcC
Confidence 653 2333321 2233456799999999999887777899999998875 545543211 123588999999998875
Q ss_pred CCC----CccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 350 DEL----FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 350 ~~~----~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
.+. ..++|+.+++++... + .+.... ..+...|.+ ..|++....++...|++++++ |.
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~-~-~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~--g~ 402 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI-R-RLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN--YN 402 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe-E-ECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecC--CC
Confidence 211 237899999875432 1 333321 123455554 568887777888899999998 65
No 12
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.39 E-value=5.7e-10 Score=122.53 Aligned_cols=318 Identities=16% Similarity=0.190 Sum_probs=165.0
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCC-eEEEEEECC----CCC----CceE
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE----ILR----PDKA 263 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg-~l~Y~~~d~----~~r----~~~v 263 (534)
+....|||||+.+++... .|.+..++++.++. | .+.....+ .....|+++| .+.+..... ... +.++
T Consensus 62 ~~~~~~spdg~~~~~~~~-~~~~~~~l~l~~~~-g-~~~~~~~~-v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (620)
T COG1506 62 VSELRWSPDGSVLAFVST-DGGRVAQLYLVDVG-G-LITKTAFG-VSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRL 137 (620)
T ss_pred ccccccCCCCCEEEEEec-cCCCcceEEEEecC-C-ceeeeecc-cccceeCCCCCeEEEEecccccccCCceeeeeccc
Confidence 455688999999999983 45557899999988 5 22211122 3458899999 666633211 011 0112
Q ss_pred EEeecCCC-CCCceEeeeec--------CCceEEEEEEcCCCcEEEEEecCcc----eeEEEEEeCCCCCceeEeeeccc
Q 009441 264 WLHKLEAD-QSNDICLYHEK--------DDIYSLGLQASESKKFLFIASESKI----TRFVFYLDVSKPEELRVLTPRVV 330 (534)
Q Consensus 264 ~~~~lgt~-~~~d~lv~~e~--------d~~~~v~~~~S~Dg~~l~i~~~~~~----~~ev~~~d~~~~~~~~~l~~~~~ 330 (534)
..+.-+.+ ...+..+.+.. ...-.+.+....+++.++....... ....++....+. ....+.+...
T Consensus 138 ~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 216 (620)
T COG1506 138 PVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELESLTPGEG 216 (620)
T ss_pred ceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceEEEcCCCc
Confidence 22222222 11111112110 1111223444555666554442221 222333322222 2444554433
Q ss_pred cee-EEEeeeCCEEEEEEcCCC---CCccEEEEEeCCCCCCceEEecCCC---C-ceeeeEEEeCCEEEEEEee-CCeeE
Q 009441 331 GVD-TAASHRGNHFFITRRSDE---LFNSELLACPVDNTSETTVLIPHRE---S-VKLQDIQLFIDHLAVYERE-GGLQK 401 (534)
Q Consensus 331 g~~-~~v~~~g~~lyi~tn~~~---~~~~~L~~~~~~~~~~~~~li~~~~---~-~~l~~~~~~~~~lv~~~~~-~g~~~ 401 (534)
+.. ..+..+|..++++.+... .....++..+........ ...... . ..+... ..++.+++.... .|...
T Consensus 217 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 294 (620)
T COG1506 217 SISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDG-DLSSGDDTRGAWAVEGG-LDGDGLLFIATDGGGSSP 294 (620)
T ss_pred eeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccce-eeccCCcccCcHHhccc-cCCCcEEEEEecCCCceE
Confidence 322 335667777777776531 122233333311111000 011100 0 001111 233456655555 55554
Q ss_pred EEEEECCCCCCcccccCCCceeeecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEEEccccCCC-C
Q 009441 402 ITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGF-D 480 (534)
Q Consensus 402 l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~~~~~~~~~-d 480 (534)
+....... +. ...+..+. +.+..++ .+++.+.+.++++..|+++|.++. +.+.++...... .. .
T Consensus 295 l~~~~~~~-~~-------~~~~~~~~--~~v~~f~--~~~~~~~~~~s~~~~p~~i~~~~~-~~~~~~~~~~~~--~~~~ 359 (620)
T COG1506 295 LFRVDDLG-GG-------VEGLSGDD--GGVPGFD--VDGRKLALAYSSPTEPPEIYLYDR-GEEAKLTSSNNS--GLKK 359 (620)
T ss_pred EEEEeccC-Cc-------eeeecCCC--ceEEEEe--eCCCEEEEEecCCCCccceEEEcC-CCceEEeecccc--cccc
Confidence 54443321 11 01122221 1233333 278899999999999999999986 333333322111 12 2
Q ss_pred CCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCcCcccC
Q 009441 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEVIFFFL 533 (534)
Q Consensus 481 ~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~~~~p~ 533 (534)
....++|.+++++.||.+|++|++.|.++ .+.+++|+||++|||+......+
T Consensus 360 ~~~~~~e~~~~~~~dG~~i~~~l~~P~~~-~~~k~yP~i~~~hGGP~~~~~~~ 411 (620)
T COG1506 360 VKLAEPEPVTYKSNDGETIHGWLYKPPGF-DPRKKYPLIVYIHGGPSAQVGYS 411 (620)
T ss_pred cccCCceEEEEEcCCCCEEEEEEecCCCC-CCCCCCCEEEEeCCCCccccccc
Confidence 34557899999999999999999999999 77788999999999986555433
No 13
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=8.1e-10 Score=116.23 Aligned_cols=203 Identities=9% Similarity=0.034 Sum_probs=134.9
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
+..++|||||++|||+...+| ..+|+++|+.+|+.... ..++....+.|+||| .++|+.... ...+||.+++.+
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~--g~~~I~~~d~~t 276 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--GSLNLYVMDLAS 276 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC--CCcEEEEEECCC
Confidence 567899999999999976555 36899999999975432 234434468999999 888875322 124699999876
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccce-eEEEeeeCCEEEEEEcC
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRS 349 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~-~~~v~~~g~~lyi~tn~ 349 (534)
+. -+.+... ......+.+||||++|++.+.......+|.++++++. .+.+....... ...++++|+.+++.+..
T Consensus 277 g~--~~~lt~~--~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 277 GQ--IRQVTDG--RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred CC--EEEccCC--CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 53 2233322 1223457899999999988766556789999998765 44454321111 23478899999888765
Q ss_pred CCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
+ ....|+.+++++... . .+.... ..+...+.+ ..|++...+++...|++++++ |.
T Consensus 352 ~--g~~~I~~~dl~~g~~-~-~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~--G~ 408 (429)
T PRK03629 352 G--GQQHIAKQDLATGGV-Q-VLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD--GR 408 (429)
T ss_pred C--CCceEEEEECCCCCe-E-EeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC--CC
Confidence 2 346788888865431 1 333221 123455554 467777777777789999987 55
No 14
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3e-10 Score=119.81 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=135.7
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
+..+.|||||++|||+...+| ..+|+++|+++|+.... ..++....+.|+||| .++|+.... ...+||.+++.+
T Consensus 206 v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~--g~~~Iy~~d~~~ 281 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD--GNPEIYVMDLGS 281 (433)
T ss_pred cccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC--CCceEEEEECCC
Confidence 556799999999999987655 47899999999876432 234444458999999 888876432 235799999876
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecc-cceeEEEeeeCCEEEEEEcC
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVDTAASHRGNHFFITRRS 349 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~-~g~~~~v~~~g~~lyi~tn~ 349 (534)
+. .+.+... ......+.+|+||++|++.+.......+|++++.++. .+.++... ......++++|+.+++.+..
T Consensus 282 g~--~~~lt~~--~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 282 RQ--LTRLTNH--FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGS 356 (433)
T ss_pred CC--eEECccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECC
Confidence 63 2233321 1223356899999999998766556789999987765 55554321 11123478999999988764
Q ss_pred CCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECC
Q 009441 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~ 408 (534)
...++|+.+++.+... . .+.... ..+...+.. ..|++....+|..+|++++++
T Consensus 357 --~~~~~I~v~d~~~g~~-~-~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 357 --GGQYRIAVMDLSTGSV-R-TLTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred --CCceeEEEEECCCCCe-E-ECCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 3457899998865321 1 333321 123445554 467777777788899999987
No 15
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.3e-10 Score=122.31 Aligned_cols=203 Identities=14% Similarity=0.102 Sum_probs=136.5
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
+..++|||||++|||+.+.+| ..+|+++|+.+|+.... ..++....++|+||| .++|+...+ ...+||..++.+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~d~~~ 273 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESK--KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRD--GNSQIYTVNADG 273 (427)
T ss_pred cccceEcCCCCEEEEEEccCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC--CCceEEEEECCC
Confidence 456799999999999987644 46899999999976442 234434468999999 888876432 235799988765
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccc-ceeEEEeeeCCEEEEEEcC
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRS 349 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~-g~~~~v~~~g~~lyi~tn~ 349 (534)
+. -+.+... ......+.+|+||++|++.++......+|.+++.++. .+.+..... .....++++|+.+++.++.
T Consensus 274 ~~--~~~lt~~--~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 274 SG--LRRLTQS--SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred CC--cEECCCC--CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 42 2233221 1223346799999999987765566789999987654 444442211 1123478999999988875
Q ss_pred CCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
+ ..+.|+.+++.+... ..+.. .. ..+.+.|.+ ..|++....+|...|++++++ |.
T Consensus 349 ~--g~~~I~v~d~~~g~~-~~lt~-~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~--g~ 405 (427)
T PRK02889 349 G--GAFKLYVQDLATGQV-TALTD-TT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSD--GR 405 (427)
T ss_pred C--CcEEEEEEECCCCCe-EEccC-CC--CccCceECCCCCEEEEEEecCCCEEEEEEECC--CC
Confidence 2 347899999865432 22332 21 134556654 578888888888899999987 65
No 16
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=8.1e-10 Score=115.31 Aligned_cols=245 Identities=10% Similarity=0.035 Sum_probs=152.5
Q ss_pred CEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCC-e-EEEEEECCCCCCceEEEeecCCCCCCceEeee
Q 009441 203 KLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-A-LVYITMDEILRPDKAWLHKLEADQSNDICLYH 280 (534)
Q Consensus 203 ~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg-~-l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~ 280 (534)
..+||.+...|.-.++|++.|.++.......-.+......|+||| . +||++... +..+||.+++.+++ .+.|..
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~--~~~lt~ 230 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGK--KEKIAS 230 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCc--EEEEec
Confidence 567777765555568999999987654332112333458999999 6 77777542 22489999998763 345543
Q ss_pred ecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccc-ceeEEEeeeCCEEEEEEcCCCCCccEEEE
Q 009441 281 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELLA 359 (534)
Q Consensus 281 e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~-g~~~~v~~~g~~lyi~tn~~~~~~~~L~~ 359 (534)
. ++......+||||+.|++......+.++|+++++++. ++.++.... .....++++|.++++.++.. ...+|+.
T Consensus 231 ~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~--g~~~Iy~ 305 (419)
T PRK04043 231 S--QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRL--GYPNIFM 305 (419)
T ss_pred C--CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCC--CCceEEE
Confidence 2 2333446799999999988766667899999998775 666765432 12334889999999999863 3468999
Q ss_pred EeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEeeC------CeeEEEEEECCCCCCcccccCCCceeeecCceeeEe
Q 009441 360 CPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREG------GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSID 433 (534)
Q Consensus 360 ~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~------g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~ 433 (534)
+++++....+ +..... . ...+...+++|++..... +..+|+++++++ |. . +.|.-. . ...
T Consensus 306 ~dl~~g~~~r-lt~~g~-~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~------~~LT~~--~-~~~ 371 (419)
T PRK04043 306 KKLNSGSVEQ-VVFHGK-N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-I------RRLTAN--G-VNQ 371 (419)
T ss_pred EECCCCCeEe-CccCCC-c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-e------EECCCC--C-CcC
Confidence 9997644322 222221 1 123444456887777654 446899999984 43 2 222211 1 111
Q ss_pred CCCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEE
Q 009441 434 PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKK 471 (534)
Q Consensus 434 ~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~ 471 (534)
...-.++++.+.|.... ..-..++.+++..+....+.
T Consensus 372 ~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CeEECCCCCEEEEEEcc-CCcEEEEEEecCCCeeEEee
Confidence 12223567777776543 22345788888655444443
No 17
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=6.4e-10 Score=116.74 Aligned_cols=251 Identities=13% Similarity=0.114 Sum_probs=153.0
Q ss_pred CCEEEEEEcCCCCe----EEEEEEEECCCCCeeccccCC-ccceeEEccCC-e--EEEEEECCCCCCceEEEeecCCCCC
Q 009441 202 NKLVAYAEDTKGDE----IYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-A--LVYITMDEILRPDKAWLHKLEADQS 273 (534)
Q Consensus 202 G~~LA~~~d~~G~E----~~~l~v~dl~tg~~~~~~i~~-~~~~~~Ws~Dg-~--l~Y~~~d~~~r~~~v~~~~lgt~~~ 273 (534)
+++|||++...+.+ .+.|+++|.++++..+..-.+ ....+.|+||| + |+|++... + ..+||.+++.+++.
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~-g-~~~I~~~~l~~g~~ 223 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL-G-VPKIFLGSLENPAG 223 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC-C-CceEEEEECCCCCc
Confidence 99999999875532 569999999988765432221 23458999998 5 67787533 2 35899999987642
Q ss_pred CceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEE--eCCCCC--ceeEeeecccce--eEEEeeeCCEEEEEE
Q 009441 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYL--DVSKPE--ELRVLTPRVVGV--DTAASHRGNHFFITR 347 (534)
Q Consensus 274 ~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~--d~~~~~--~~~~l~~~~~g~--~~~v~~~g~~lyi~t 347 (534)
+.|-.- +.....+.+||||++|++.+......++|+. +++.+. ..+.++....+. ...++++|..|++.+
T Consensus 224 --~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s 299 (428)
T PRK01029 224 --KKILAL--QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS 299 (428)
T ss_pred --eEeecC--CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence 233221 1222347899999999988765555677775 444321 345565432222 345889999999998
Q ss_pred cCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceeee
Q 009441 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 425 (534)
Q Consensus 348 n~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~l 425 (534)
+.+ ...+|+.++++..+...-.+..... ......|. ++.|++....+|..+|+++++.+ |+ . +.+.-
T Consensus 300 ~~~--g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~-~------~~Lt~ 368 (428)
T PRK01029 300 NKD--GRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GR-D------YQLTT 368 (428)
T ss_pred CCC--CCceEEEEECcccccceEEeccCCC-CccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CC-e------EEccC
Confidence 753 3457888877421111112322222 23445565 45788877777888999999984 44 1 22221
Q ss_pred cCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEEE
Q 009441 426 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI 472 (534)
Q Consensus 426 p~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~~ 472 (534)
. ........-..+++.++|.... .....+|.+|+.+++.+.+..
T Consensus 369 ~--~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 369 S--PENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVI 412 (428)
T ss_pred C--CCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeec
Confidence 1 0011111223456777766543 234689999998887666553
No 18
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1e-09 Score=115.89 Aligned_cols=246 Identities=12% Similarity=0.127 Sum_probs=156.0
Q ss_pred CCCEEEEEEcCCCCe--EEEEEEEECCCCCeecccc-CCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCce
Q 009441 201 DNKLVAYAEDTKGDE--IYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 276 (534)
Q Consensus 201 DG~~LA~~~d~~G~E--~~~l~v~dl~tg~~~~~~i-~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~ 276 (534)
-..+|||..+.+|.+ .++|+++|.+++......- .+....+.|+||| .|+|++.... ..+||.+++.++.. +
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~--~ 239 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQR--E 239 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcE--E
Confidence 367899998877644 6899999998765433211 1223459999999 9999986432 35899999977632 3
Q ss_pred EeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee--EEEeeeCCEEEEEEcCCCCCc
Q 009441 277 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRRSDELFN 354 (534)
Q Consensus 277 lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~--~~v~~~g~~lyi~tn~~~~~~ 354 (534)
.+... +.....+.+||||+.|++........+||+++++++. .+.++... +.. ..++++|..+++.++.. ..
T Consensus 240 ~l~~~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~--g~ 313 (435)
T PRK05137 240 LVGNF--PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSP-AIDTSPSYSPDGSQIVFESDRS--GS 313 (435)
T ss_pred EeecC--CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccCCC-CccCceeEcCCCCEEEEEECCC--CC
Confidence 33221 2223356899999999887766666799999998765 55565432 222 34789999999988753 34
Q ss_pred cEEEEEeCCCCCCceEEecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceeeecCceeeE
Q 009441 355 SELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSI 432 (534)
Q Consensus 355 ~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i 432 (534)
.+|+.++++.... ..+... .. ......|. ++.|++.....+..+|++++++ +... +.+. ... .+
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~-~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~--~~~~------~~lt--~~~-~~ 379 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFG-GG-RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD--GSGE------RILT--SGF-LV 379 (435)
T ss_pred CeEEEEECCCCCe-EEeecC-CC-cccCeEECCCCCEEEEEEcCCCceEEEEEECC--CCce------Eecc--CCC-CC
Confidence 6889888765322 223222 12 23445554 4577777766676789999986 3321 1221 111 12
Q ss_pred eCCCCccCccEEEEEeccCCCC--CeEEEEECCCCcEEEE
Q 009441 433 DPSESVFSSRILRFHYSSLRTP--PSVYDYDMDMGISVLK 470 (534)
Q Consensus 433 ~~~~~~~~~~~l~~~~sS~~~P--~~~y~~d~~~~~~~~~ 470 (534)
....-.++++.++|........ ..+|.+|+.+++.+.+
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 2222345677787776654443 5799999877665544
No 19
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=7.9e-10 Score=116.64 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=112.0
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-CCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
..++|||||++|+|+.+.+|+ .+|+++|+++|+.....- ......+.|+||| .++|++. ..+. .+||.+++.++
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~--~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd-~~g~-~~iy~~dl~~g 326 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGN--PEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSD-RGGR-PQIYRVAASGG 326 (433)
T ss_pred cCceECCCCCEEEEEEeCCCC--ceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEEC-CCCC-ceEEEEECCCC
Confidence 357999999999999987775 689999999998654211 1233458999999 8888863 2222 47999998765
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcCCC
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDE 351 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~ 351 (534)
. ...+.+++ .+...+.+||||++|++.........|+++++.++. ++.++.........++++|..+++.++.
T Consensus 327 ~-~~~lt~~g---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-~~~Lt~~~~~~~p~~spdG~~i~~~s~~-- 399 (433)
T PRK04922 327 S-AERLTFQG---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-VRTLTPGSLDESPSFAPNGSMVLYATRE-- 399 (433)
T ss_pred C-eEEeecCC---CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC-eEECCCCCCCCCceECCCCCEEEEEEec--
Confidence 3 22333432 233357899999999987665445689999997765 6666543221223478899999998885
Q ss_pred CCccEEEEEeCCC
Q 009441 352 LFNSELLACPVDN 364 (534)
Q Consensus 352 ~~~~~L~~~~~~~ 364 (534)
....+|+.++++.
T Consensus 400 ~g~~~L~~~~~~g 412 (433)
T PRK04922 400 GGRGVLAAVSTDG 412 (433)
T ss_pred CCceEEEEEECCC
Confidence 3457898888754
No 20
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8.9e-10 Score=116.25 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=111.9
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-CCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
..+.|||||++|||+.+.+|. .+|+++|+++|+.....- ......+.|+||| .++|++. ..+ ..+||.+++.++
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~--~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~-~~g-~~~iy~~d~~~g 321 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGN--PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSD-RGG-KPQIYKVNVNGG 321 (430)
T ss_pred CCeEECCCCCEEEEEEccCCC--ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEEC-CCC-CceEEEEECCCC
Confidence 357999999999999987775 789999999987654211 2234458999999 8888863 222 347999998766
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcCCC
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDE 351 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~ 351 (534)
.. .++.+.. .+.....+|+||++|++.........|+++++.++. .+.+..........++++|..+++.++.
T Consensus 322 ~~-~~lt~~~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~-~~~lt~~~~~~~p~~spdg~~i~~~~~~-- 394 (430)
T PRK00178 322 RA-ERVTFVG---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS-VRILTDTSLDESPSVAPNGTMLIYATRQ-- 394 (430)
T ss_pred CE-EEeecCC---CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC-EEEccCCCCCCCceECCCCCEEEEEEec--
Confidence 42 2333332 223346789999999988755445679999998765 6666553222233588899999888875
Q ss_pred CCccEEEEEeCCC
Q 009441 352 LFNSELLACPVDN 364 (534)
Q Consensus 352 ~~~~~L~~~~~~~ 364 (534)
..+.+|+.++++.
T Consensus 395 ~g~~~l~~~~~~g 407 (430)
T PRK00178 395 QGRGVLMLVSING 407 (430)
T ss_pred CCceEEEEEECCC
Confidence 3456788887753
No 21
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.1e-09 Score=115.64 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=109.4
Q ss_pred EEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC-CccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCC
Q 009441 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 272 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~-~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~ 272 (534)
.+.|||||++|||+.+.+|. .+|+++|+++|+....... .....+.|+||| .++|++.. .. ..+||.+++.++.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~--~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~-~g-~~~Iy~~dl~~g~ 341 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQ--PEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSER-GG-KPQIYRVNLASGK 341 (448)
T ss_pred CeeECCCCCEEEEEEeCCCC--eEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECC-CC-CceEEEEECCCCC
Confidence 57899999999999887764 7899999999876542211 233558999999 88887632 22 2589999987663
Q ss_pred CCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcCCCC
Q 009441 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDEL 352 (534)
Q Consensus 273 ~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~~ 352 (534)
. ..+.++. .+.....+||||++|++.........+|+++++++. ++.+........-.++++|..+++.++.+
T Consensus 342 ~-~~Lt~~g---~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-~~~lt~~~~d~~ps~spdG~~I~~~~~~~-- 414 (448)
T PRK04792 342 V-SRLTFEG---EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-MQVLTSTRLDESPSVAPNGTMVIYSTTYQ-- 414 (448)
T ss_pred E-EEEecCC---CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-eEEccCCCCCCCceECCCCCEEEEEEecC--
Confidence 2 2333332 223346789999999987665555689999998875 55555432111224788999999888753
Q ss_pred CccEEEEEeCC
Q 009441 353 FNSELLACPVD 363 (534)
Q Consensus 353 ~~~~L~~~~~~ 363 (534)
....|+.++.+
T Consensus 415 g~~~l~~~~~~ 425 (448)
T PRK04792 415 GKQVLAAVSID 425 (448)
T ss_pred CceEEEEEECC
Confidence 34567777764
No 22
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.5e-09 Score=112.49 Aligned_cols=160 Identities=16% Similarity=0.241 Sum_probs=110.3
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-CCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
..+.|||||++|||+.+..|. .+|+++|+++|+.....- ......+.|+||| .|+|++... + ..+||..++.++
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~--~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~-g-~~~Iy~~d~~~g 321 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGS--LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA-G-RPQVYKVNINGG 321 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC-C-CceEEEEECCCC
Confidence 457999999999999887765 469999999987654211 1223468999999 888887432 2 348999988765
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcCCC
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDE 351 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~ 351 (534)
.. .++.+.. .....+.+||||++|++........++|+++++++. .+.+..........++++|..+++.++. +
T Consensus 322 ~~-~~lt~~~---~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~~~~~~p~~SpDG~~i~~~s~~-~ 395 (429)
T PRK03629 322 AP-QRITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDTFLDETPSIAPNGTMVIYSSSQ-G 395 (429)
T ss_pred Ce-EEeecCC---CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCCCCCCCceECCCCCEEEEEEcC-C
Confidence 32 2222221 122346789999999887765556689999998775 6666543222234488999999998875 2
Q ss_pred CCccEEEEEeCCC
Q 009441 352 LFNSELLACPVDN 364 (534)
Q Consensus 352 ~~~~~L~~~~~~~ 364 (534)
....|..++++.
T Consensus 396 -~~~~l~~~~~~G 407 (429)
T PRK03629 396 -MGSVLNLVSTDG 407 (429)
T ss_pred -CceEEEEEECCC
Confidence 346677777753
No 23
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=3.7e-09 Score=111.27 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=110.0
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-CCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
..+.|||||++|||+.+.+|. .+|+++|+++++.....- .+....+.|+||| .++|++. ..+ ..+||..++.++
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~--~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~-~~g-~~~Iy~~~~~~g 318 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGN--SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSD-RGG-APQIYRMPASGG 318 (427)
T ss_pred cceEECCCCCEEEEEEccCCC--ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEec-CCC-CcEEEEEECCCC
Confidence 467999999999999887774 789999998876543211 1233458899999 8888763 222 247998887655
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcCCC
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDE 351 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~ 351 (534)
. ...+.++. .+...+.+||||++|++.+......+|+++++.++. .+.+........-.++++|..|++.++..
T Consensus 319 ~-~~~lt~~g---~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-~~~lt~~~~~~~p~~spdg~~l~~~~~~~- 392 (427)
T PRK02889 319 A-AQRVTFTG---SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ-VTALTDTTRDESPSFAPNGRYILYATQQG- 392 (427)
T ss_pred c-eEEEecCC---CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC-eEEccCCCCccCceECCCCCEEEEEEecC-
Confidence 3 22333332 233457899999999987766555689999998765 55555432222234789999999999863
Q ss_pred CCccEEEEEeCC
Q 009441 352 LFNSELLACPVD 363 (534)
Q Consensus 352 ~~~~~L~~~~~~ 363 (534)
.+..|+.++++
T Consensus 393 -g~~~l~~~~~~ 403 (427)
T PRK02889 393 -GRSVLAAVSSD 403 (427)
T ss_pred -CCEEEEEEECC
Confidence 34678887774
No 24
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.3e-08 Score=107.31 Aligned_cols=197 Identities=11% Similarity=0.080 Sum_probs=124.1
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
+..+.|||||++|||+...+ +..+|+++|+.+|+.... ..++....++|+||| .++|+...+ ...+||..++.+
T Consensus 206 v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~--g~~~Iy~~d~~~ 281 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD--GVLNIYVMGANG 281 (429)
T ss_pred cccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC--CcEEEEEEECCC
Confidence 56689999999999987643 357899999999865322 234333458999999 888876322 124699888865
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcCC
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 350 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~ 350 (534)
+. -..+... ......+.+||||++|++.+......+||.++..+.. .+.+. . .+....++++|+.+++.+.
T Consensus 282 ~~--~~~lt~~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~l~-~-~~~~~~~SpDG~~ia~~~~-- 352 (429)
T PRK01742 282 GT--PSQLTSG--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASLVG-G-RGYSAQISADGKTLVMING-- 352 (429)
T ss_pred CC--eEeeccC--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEec-C-CCCCccCCCCCCEEEEEcC--
Confidence 53 2223221 2223457899999999988766566789999987654 33332 1 1212237789998887654
Q ss_pred CCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 351 ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
..++.+|+.+... . .+.... ..+.+.+.+ ..|++...+++...+++++.+ |.
T Consensus 353 ----~~i~~~Dl~~g~~-~-~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~--G~ 406 (429)
T PRK01742 353 ----DNVVKQDLTSGST-E-VLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD--GR 406 (429)
T ss_pred ----CCEEEEECCCCCe-E-EecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC--CC
Confidence 2477788765321 1 222111 123455554 456666666666667777776 65
No 25
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.04 E-value=1.3e-08 Score=105.64 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=105.1
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
..++|||||++|||..+.+|+ .+|+++|+.++..... .-.++.....|+||| .++|++ |..++| +||+.++.+.
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~--~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p-~I~~~~~~g~ 316 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGS--PDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTS-DRGGRP-QIYLYDLEGS 316 (425)
T ss_pred CCccCCCCCCEEEEEECCCCC--ccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEe-CCCCCc-ceEEECCCCC
Confidence 356899999999999998865 8999999998874431 223344568999999 999996 666777 8999998766
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcCCC
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDE 351 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~ 351 (534)
+. .++.+.... .. ...+||||++|++.....+...+...++.....++.+........-.+.++|..+.+.++. .
T Consensus 317 ~~-~riT~~~~~--~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~-~ 391 (425)
T COG0823 317 QV-TRLTFSGGG--NS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ-G 391 (425)
T ss_pred ce-eEeeccCCC--Cc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC-C
Confidence 43 344544322 11 4678999999999874433345666665543235555543222222356777777776664 2
Q ss_pred CCccEEEEEeC
Q 009441 352 LFNSELLACPV 362 (534)
Q Consensus 352 ~~~~~L~~~~~ 362 (534)
....|..++.
T Consensus 392 -~~~~l~~~s~ 401 (425)
T COG0823 392 -GGSVLSLVSL 401 (425)
T ss_pred -CCceEEEeec
Confidence 3345555544
No 26
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.96 E-value=5.7e-07 Score=94.45 Aligned_cols=242 Identities=14% Similarity=0.102 Sum_probs=144.3
Q ss_pred CCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC-ccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCce
Q 009441 199 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 276 (534)
Q Consensus 199 SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~-~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~ 276 (534)
...+..++|....+++....|+++|.++++.....-.+ ....+.|+||| .++|+.... ...+||.+++.++.. .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~--~ 227 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQR--E 227 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCE--E
Confidence 45678899987765566789999999766543321122 23458899999 899987543 235799999876531 2
Q ss_pred EeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccc-eeEEEeeeCCEEEEEEcCCCCCcc
Q 009441 277 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNS 355 (534)
Q Consensus 277 lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g-~~~~v~~~g~~lyi~tn~~~~~~~ 355 (534)
.+... ......+.++|||+.|++........++|++++.++. .+.+...... ....++++|.+|++.++.. ...
T Consensus 228 ~~~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~--g~~ 302 (417)
T TIGR02800 228 KVASF--PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRG--GSP 302 (417)
T ss_pred EeecC--CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCC--CCc
Confidence 22221 1222346799999999887665566789999998764 4444432111 1234678889999888753 335
Q ss_pred EEEEEeCCCCCCceEEecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceeeecCceeeEe
Q 009441 356 ELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSID 433 (534)
Q Consensus 356 ~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~ 433 (534)
+|+.+++.+... ..+.... . ....+.+. ++.|++....++..+|+++++.+ +. . +.+. +.. ...
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~-~-~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~------~~l~--~~~-~~~ 368 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRG-G-YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-E------RVLT--DTG-LDE 368 (417)
T ss_pred eEEEEECCCCCE-EEeecCC-C-CccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-e------EEcc--CCC-CCC
Confidence 899888865331 1133222 1 23445554 35677777666777899999874 33 1 1121 111 111
Q ss_pred CCCCccCccEEEEEeccCCCCCeEEEEECCC
Q 009441 434 PSESVFSSRILRFHYSSLRTPPSVYDYDMDM 464 (534)
Q Consensus 434 ~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~ 464 (534)
......+++.+++....-.. ..++.++...
T Consensus 369 ~p~~spdg~~l~~~~~~~~~-~~l~~~~~~g 398 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGR-GVLGLVSTDG 398 (417)
T ss_pred CceECCCCCEEEEEEeCCCc-EEEEEEECCC
Confidence 11223456667666554333 4566666443
No 27
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.90 E-value=3.7e-07 Score=93.71 Aligned_cols=241 Identities=21% Similarity=0.222 Sum_probs=137.2
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-------------------CCccceeEEccCC-eEEEE
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-------------------VGVTASVEWAGNE-ALVYI 252 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-------------------~~~~~~~~Ws~Dg-~l~Y~ 252 (534)
+..+.|||||++|||..+. .|+++++.+|+..+.+- -+....+.||||| .|+|.
T Consensus 45 ~~~~~~sP~g~~~~~v~~~------nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRDN------NLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp BSEEEE-SSSTEEEEEETT------EEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred cccceeecCCCeeEEEecC------ceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 4567999999999999762 69999988886543211 1123458899999 99999
Q ss_pred EECCCC---------------CC----------------ceEEEeecCCCCCCceEeee---ecCCceEEEEEEcCCCcE
Q 009441 253 TMDEIL---------------RP----------------DKAWLHKLEADQSNDICLYH---EKDDIYSLGLQASESKKF 298 (534)
Q Consensus 253 ~~d~~~---------------r~----------------~~v~~~~lgt~~~~d~lv~~---e~d~~~~v~~~~S~Dg~~ 298 (534)
+.|+.. .| .+++..++.++... .+-.. .....+...+.|++|++.
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcE
Confidence 987531 11 12333344333211 11111 123345567899999996
Q ss_pred EEEEecC--cceeEEEEEeCCCCCceeEeee-cccce-e----EEE-eeeCCEEEEEEcCCCCCccEEEEEeCCCCCCce
Q 009441 299 LFIASES--KITRFVFYLDVSKPEELRVLTP-RVVGV-D----TAA-SHRGNHFFITRRSDELFNSELLACPVDNTSETT 369 (534)
Q Consensus 299 l~i~~~~--~~~~ev~~~d~~~~~~~~~l~~-~~~g~-~----~~v-~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~ 369 (534)
+++...+ .....+++++..++. .+.+.. ..++- . ..+ .++++.+++++.++ .-..|+.++.+... .+
T Consensus 198 l~~~~~nR~q~~~~l~~~d~~tg~-~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~--G~~hly~~~~~~~~-~~ 273 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVLCDASTGE-TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD--GYRHLYLYDLDGGK-PR 273 (353)
T ss_dssp EEEEEEETTSTEEEEEEEEECTTT-CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT--SSEEEEEEETTSSE-EE
T ss_pred EEEEEcccCCCEEEEEEEECCCCc-eeEEEEecCCcceeeecccccccCCCCEEEEEEEcC--CCcEEEEEcccccc-ee
Confidence 6555433 344678888887754 333332 22221 1 112 25678888888753 35789999886532 22
Q ss_pred EEecCCCCc-eeeeEEEeCCEEEEEEeeC--CeeEEEEEECC-CCCCcccccCCCceeeecCce-eeEeCCCCccCccEE
Q 009441 370 VLIPHRESV-KLQDIQLFIDHLAVYEREG--GLQKITTYRLP-AVGEPLKSLQGGKSVEFIDPV-YSIDPSESVFSSRIL 444 (534)
Q Consensus 370 ~li~~~~~~-~l~~~~~~~~~lv~~~~~~--g~~~l~~~~l~-~~g~~~~~~~~~~~i~lp~~~-~~i~~~~~~~~~~~l 444 (534)
+|.....++ .+..++..++.|++....+ +..+|++++++ . |. + +.|.-.... +.+. .+.+++.+
T Consensus 274 ~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-~~-~------~~LT~~~~~~~~~~---~Spdg~y~ 342 (353)
T PF00930_consen 274 QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-GE-P------KCLTCEDGDHYSAS---FSPDGKYY 342 (353)
T ss_dssp ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-TE-E------EESSTTSSTTEEEE---E-TTSSEE
T ss_pred ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-CC-e------EeccCCCCCceEEE---ECCCCCEE
Confidence 333333222 2333444457888888763 46789999998 4 44 1 222211111 1222 34567899
Q ss_pred EEEeccCCCCC
Q 009441 445 RFHYSSLRTPP 455 (534)
Q Consensus 445 ~~~~sS~~~P~ 455 (534)
...++++.+|+
T Consensus 343 v~~~s~~~~P~ 353 (353)
T PF00930_consen 343 VDTYSGPDTPP 353 (353)
T ss_dssp EEEEESSSSCE
T ss_pred EEEEcCCCCCC
Confidence 99999999985
No 28
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=1.9e-06 Score=90.85 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=118.3
Q ss_pred CCEEEEEEcCC-CCeEEEEEEEECCCCCeeccc-cCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEe
Q 009441 202 NKLVAYAEDTK-GDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICL 278 (534)
Q Consensus 202 G~~LA~~~d~~-G~E~~~l~v~dl~tg~~~~~~-i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv 278 (534)
+++|||..+.. +.+.++|+|+|.+++...... -......+.|+||| .++|++.+. ...+||.+++.++. .+.+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~--~~~l 243 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGA--RKVV 243 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCc--eEEE
Confidence 78999998764 455699999999876543211 12223459999999 999988643 23479999987653 2233
Q ss_pred eeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccc-eeEEEeeeCCEEEEEEcCCCCCccEE
Q 009441 279 YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSEL 357 (534)
Q Consensus 279 ~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g-~~~~v~~~g~~lyi~tn~~~~~~~~L 357 (534)
... +.....+.+||||++|++........+||+++++++. .+.++..... ....++++|..+++.++.+ ...+|
T Consensus 244 ~~~--~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~--g~~~I 318 (429)
T PRK01742 244 ASF--RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRS--GSPQV 318 (429)
T ss_pred ecC--CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCC--CCceE
Confidence 211 1122347899999999987655555679999987764 5555543211 1244789999999988753 34688
Q ss_pred EEEeCCCCCCceEEecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECCC
Q 009441 358 LACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 358 ~~~~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 409 (534)
+.++...... . ++... .. ...+. +++|++... ..++++++.+
T Consensus 319 ~~~~~~~~~~-~-~l~~~-~~---~~~~SpDG~~ia~~~~----~~i~~~Dl~~ 362 (429)
T PRK01742 319 YRMSASGGGA-S-LVGGR-GY---SAQISADGKTLVMING----DNVVKQDLTS 362 (429)
T ss_pred EEEECCCCCe-E-EecCC-CC---CccCCCCCCEEEEEcC----CCEEEEECCC
Confidence 8888754321 2 23221 11 22333 356665543 3467788874
No 29
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.77 E-value=3.2e-07 Score=95.44 Aligned_cols=205 Identities=14% Similarity=0.133 Sum_probs=134.2
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.+-...|||||+.++|..-..+. ...+++.|+++|+.-.. ...+......|+||| .++|....+ ...+||..++.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd--g~~~iy~~dl~ 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD--GSPDIYLMDLD 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC--CCccEEEEcCC
Confidence 34557999999999999665442 27899999999975331 233444558999999 898887543 34579999997
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeE-EEeeeCCEEEEEEc
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRR 348 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~-~v~~~g~~lyi~tn 348 (534)
+.+. .. +-+ .........+||||++|++.+...+...||++++++.. .+.++....+..+ .++++|+.+.+.+.
T Consensus 271 ~~~~-~~-Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 271 GKNL-PR-LTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCcc-ee-ccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 7652 22 221 12233357899999999999888888899999998875 5666654333222 27899999999884
Q ss_pred CCCCCccEEEEEeCCCCCCceE-EecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 349 SDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~-li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
. ++ ...++..++.+... | +..... ..+...+. +..+++.....+.+.+....+. |+
T Consensus 346 ~-~g-~~~i~~~~~~~~~~--~~~lt~~~--~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~--g~ 404 (425)
T COG0823 346 S-GG-QWDIDKNDLASGGK--IRILTSTY--LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD--GR 404 (425)
T ss_pred c-CC-ceeeEEeccCCCCc--EEEccccc--cCCCCCcCCCCceEEEeccCCCCceEEEeecc--ce
Confidence 3 22 25677776654321 4 333221 12233333 3455555555566777777666 55
No 30
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.58 E-value=9.5e-06 Score=83.25 Aligned_cols=199 Identities=15% Similarity=0.113 Sum_probs=122.9
Q ss_pred EEEEECCCCCEEEEEEcCC-----------------------------CC--eEEEEEEEECCCCCeecccc-------C
Q 009441 194 GCFQVSPDNKLVAYAEDTK-----------------------------GD--EIYTVYVIDIETGTPVGKPL-------V 235 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~-----------------------------G~--E~~~l~v~dl~tg~~~~~~i-------~ 235 (534)
..+.|||||++|||..-.. |+ -...|+|+|+++|+.....+ .
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 4578999999999875311 11 15679999999997632111 1
Q ss_pred CccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEE---EEEEc-CCCcEEEEEecCcceeE
Q 009441 236 GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSL---GLQAS-ESKKFLFIASESKITRF 310 (534)
Q Consensus 236 ~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v---~~~~S-~Dg~~l~i~~~~~~~~e 310 (534)
.....+.|++|+ .|++...+....-..++..+..++. -.+++++..+.|.- .+.+. +++..++..+...+...
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~--~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE--TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT--CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc--eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 234569999999 5988888766555667777776653 35666666555421 23333 56655555555556789
Q ss_pred EEEEeCCCCCceeEeeecccce--eEEEeeeCCEEEEEEcCCCCCccEEEEEeCC-CCCCceEEecCCCCceeeeEEEeC
Q 009441 311 VFYLDVSKPEELRVLTPRVVGV--DTAASHRGNHFFITRRSDELFNSELLACPVD-NTSETTVLIPHRESVKLQDIQLFI 387 (534)
Q Consensus 311 v~~~d~~~~~~~~~l~~~~~g~--~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~-~~~~~~~li~~~~~~~l~~~~~~~ 387 (534)
||+++.+++. .+.|+...-.+ ...++..++.+||.++..+.....|++++++ ... .. .+....... ..+.+.+
T Consensus 262 ly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~-~LT~~~~~~-~~~~~Sp 337 (353)
T PF00930_consen 262 LYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PK-CLTCEDGDH-YSASFSP 337 (353)
T ss_dssp EEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EE-ESSTTSSTT-EEEEE-T
T ss_pred EEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eE-eccCCCCCc-eEEEECC
Confidence 9999998864 66777654333 2347788999999999744456799999997 422 11 333332221 2444443
Q ss_pred --CEEEEEEeeCC
Q 009441 388 --DHLAVYEREGG 398 (534)
Q Consensus 388 --~~lv~~~~~~g 398 (534)
+++++.+...+
T Consensus 338 dg~y~v~~~s~~~ 350 (353)
T PF00930_consen 338 DGKYYVDTYSGPD 350 (353)
T ss_dssp TSSEEEEEEESSS
T ss_pred CCCEEEEEEcCCC
Confidence 56666665433
No 31
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.2e-05 Score=83.90 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=85.6
Q ss_pred EEEEEEeeCC--eeEEEEEECCCCCCcccccCCCceeeecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCc
Q 009441 389 HLAVYEREGG--LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (534)
Q Consensus 389 ~lv~~~~~~g--~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~ 466 (534)
-+|+...+++ ...|++..+...|+. .. +.+.+++-.. ..+.+-+.+...++|--.|+.+-.|.+.+++
T Consensus 517 LVYf~gt~d~PlE~hLyvvsye~~g~~-------~r--lt~~g~sh~~-~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~ 586 (867)
T KOG2281|consen 517 LVYFVGTKDTPLEHHLYVVSYENPGEI-------AR--LTEPGYSHSC-ELDQQCDHFVSYYSSVGSPPCVSLYSLSWPE 586 (867)
T ss_pred EEEEEccCCCCceeeEEEEEEecCCce-------ee--ccCCCcccch-hhhhhhhhHhhhhhcCCCCceEEEEeccCCc
Confidence 3455666666 357888888733552 12 2233333221 1222233466677889999999888887665
Q ss_pred EEEEEEccc------cCCCCCCCcEE-EEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCcCc
Q 009441 467 SVLKKIETV------LGGFDTNNYFT-ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEVIF 530 (534)
Q Consensus 467 ~~~~~~~~~------~~~~d~~~~~~-e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~~~ 530 (534)
-..+..+.. -+...+.+|+. |-+.+.|+-|+.+=+-|++|-++ ++.+|+|++|++|||+++++
T Consensus 587 ~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~-~pgkkYptvl~VYGGP~VQl 656 (867)
T KOG2281|consen 587 NDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNF-QPGKKYPTVLNVYGGPGVQL 656 (867)
T ss_pred cCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccC-CCCCCCceEEEEcCCCceEE
Confidence 332222110 01123345654 77888998899999999999999 99999999999999999976
No 32
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.18 E-value=0.0023 Score=67.21 Aligned_cols=250 Identities=17% Similarity=0.165 Sum_probs=143.4
Q ss_pred EeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecchhcCCCCcEEEEEEEECCCCCEEEEE
Q 009441 129 RQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYA 208 (534)
Q Consensus 129 ~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~ 208 (534)
++|.++.|.-..+|.+...++...... + +.+-| .+.. ...+.+.|++||+.+.|+
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~t------------------g-~~l~d--~i~~----~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLET------------------G-KFLPD--GIEN----PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTT------------------T-EEEEE--EEEE----EESEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCC------------------C-cCcCC--cccc----cccceEEEeCCCCEEEEE
Confidence 467788887777777776666554431 1 33332 1111 112237999999999999
Q ss_pred EcCCCCe------EEEEEEEECCCCCeecccc-----CCc-cceeEEccCC-eEEEEEECCCCCCceEEEeecCCC---C
Q 009441 209 EDTKGDE------IYTVYVIDIETGTPVGKPL-----VGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD---Q 272 (534)
Q Consensus 209 ~d~~G~E------~~~l~v~dl~tg~~~~~~i-----~~~-~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~---~ 272 (534)
.-..+.. ..+++...+.++..-...| ... .-.+.+++|+ .++........ ...+|..++... .
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPD 266 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCc
Confidence 8777655 7899999998874321111 122 3357889999 55555554333 368999998764 2
Q ss_pred CCceEeeeecCCc-eEEEEEEcCCCcEEEEEecC-cceeEEEEEeCCCCC--cee-Eeeeccccee-EEEeeeCCEEEEE
Q 009441 273 SNDICLYHEKDDI-YSLGLQASESKKFLFIASES-KITRFVFYLDVSKPE--ELR-VLTPRVVGVD-TAASHRGNHFFIT 346 (534)
Q Consensus 273 ~~d~lv~~e~d~~-~~v~~~~S~Dg~~l~i~~~~-~~~~ev~~~d~~~~~--~~~-~l~~~~~g~~-~~v~~~g~~lyi~ 346 (534)
..-.+|....+.. +++. .. |..++|.++. ..+..|+.++++.+. .+. .+.+..++.. -.+...+++|++.
T Consensus 267 ~~~~~l~~~~~~~~~~v~--~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVD--HH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp -SEEEEEESSSS-EEEEE--EE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE
T ss_pred CCcEEEeCCCCceEEEEE--cc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE
Confidence 2334444432322 2332 22 5555555553 445689999998876 345 5666555433 3367789999998
Q ss_pred EcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEE--eCCEEEEEEeeCCee-EEEEEECCCCCC
Q 009441 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREGGLQ-KITTYRLPAVGE 412 (534)
Q Consensus 347 tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~-~l~~~~l~~~g~ 412 (534)
.+.+ ...+|..+++.... ..-.++......+..+.. ..+.+.+.+..--.+ .++.+++.+ |+
T Consensus 343 ~~~~--~~~~l~v~~~~~~~-~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t-~~ 407 (414)
T PF02897_consen 343 YREN--GSSRLRVYDLDDGK-ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT-GE 407 (414)
T ss_dssp EEET--TEEEEEEEETT-TE-EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT-TC
T ss_pred EEEC--CccEEEEEECCCCc-EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC-CC
Confidence 8863 45788888886111 111222222223444432 246787777765554 788888875 44
No 33
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.12 E-value=0.00023 Score=66.34 Aligned_cols=142 Identities=16% Similarity=0.200 Sum_probs=84.2
Q ss_pred EEEECCCCCEEEEEEcC----CCC---eEEEEEEEECCCCCeeccccC--CccceeEEccCC-eEEEEEECCCCCCceEE
Q 009441 195 CFQVSPDNKLVAYAEDT----KGD---EIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAW 264 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~----~G~---E~~~l~v~dl~tg~~~~~~i~--~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~ 264 (534)
.+.|+|+|++|++.++. .|. ....|+.++..+.......++ +....++|+|+| .|+.+.-. .+.++.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~---~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS---MPAKVT 86 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc---CCcccE
Confidence 46899999999999883 221 135677777665543222332 224569999999 77665421 233566
Q ss_pred EeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecc--cceeEEEeeeCCE
Q 009441 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--VGVDTAASHRGNH 342 (534)
Q Consensus 265 ~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~--~g~~~~v~~~g~~ 342 (534)
.+++.. +...-+.. . ..-.+.+||+|++|++........++.+.|..+. +.+.... .-....++++|.+
T Consensus 87 lyd~~~---~~i~~~~~-~--~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~---~~i~~~~~~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 87 LYDVKG---KKIFSFGT-Q--PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK---KKISTFEHSDATDVEWSPDGRY 157 (194)
T ss_pred EEcCcc---cEeEeecC-C--CceEEEECCCCCEEEEEEccCCCcEEEEEECCCC---EEeeccccCcEEEEEEcCCCCE
Confidence 666531 11222322 1 1124789999999998765444466788887753 2332221 1123447888888
Q ss_pred EEEEEc
Q 009441 343 FFITRR 348 (534)
Q Consensus 343 lyi~tn 348 (534)
|...+.
T Consensus 158 ~~ta~t 163 (194)
T PF08662_consen 158 LATATT 163 (194)
T ss_pred EEEEEe
Confidence 776654
No 34
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.11 E-value=0.0059 Score=60.15 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=121.5
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC--CccceeEEccCCeEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~--~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
..+.+||||+.++.+.... ..|+++|+.+|+.+.. ++ .....+.|+|||..+|+.... ...++.+++.+.
T Consensus 34 ~~l~~~~dg~~l~~~~~~~----~~v~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~---~~~l~~~d~~~~ 105 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDS----DTIQVIDLATGEVIGT-LPSGPDPELFALHPNGKILYIANED---DNLVTVIDIETR 105 (300)
T ss_pred CceEECCCCCEEEEEECCC----CeEEEEECCCCcEEEe-ccCCCCccEEEECCCCCEEEEEcCC---CCeEEEEECCCC
Confidence 4578999999876654322 3699999999887542 21 112358899999555554321 236888888654
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccce-eEEEeeeCCEEEEEEcCC
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSD 350 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~-~~~v~~~g~~lyi~tn~~ 350 (534)
. ....+... .....+.+++||+++++.... .+.+++++..+.. ........... ...++++|..|++.+..
T Consensus 106 ~--~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~--~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~- 177 (300)
T TIGR03866 106 K--VLAEIPVG--VEPEGMAVSPDGKIVVNTSET--TNMAHFIDTKTYE-IVDNVLVDQRPRFAEFTADGKELWVSSEI- 177 (300)
T ss_pred e--EEeEeeCC--CCcceEEECCCCCEEEEEecC--CCeEEEEeCCCCe-EEEEEEcCCCccEEEECCCCCEEEEEcCC-
Confidence 1 12222211 112346789999998876543 2345666766543 21111111111 23366777777664432
Q ss_pred CCCccEEEEEeCCCCCC-ceEEec--C-C-CCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECCCCCCcccccCCCcee
Q 009441 351 ELFNSELLACPVDNTSE-TTVLIP--H-R-ESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 423 (534)
Q Consensus 351 ~~~~~~L~~~~~~~~~~-~~~li~--~-~-~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i 423 (534)
.+.+...++.+... ..+-.. . . ......++.+.. +++++....+ ..+.++++.+ ++.+ ..+
T Consensus 178 ---~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~-~~~~------~~~ 245 (300)
T TIGR03866 178 ---GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKT-YEVL------DYL 245 (300)
T ss_pred ---CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCC-CcEE------EEE
Confidence 24566677754321 111010 0 0 011122344443 4555544322 3588888864 4421 112
Q ss_pred eecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcE
Q 009441 424 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (534)
Q Consensus 424 ~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~ 467 (534)
........+ ..+.++..++.. + -.-+++..+|+.+++.
T Consensus 246 ~~~~~~~~~---~~~~~g~~l~~~-~--~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 246 LVGQRVWQL---AFTPDEKYLLTT-N--GVSNDVSVIDVAALKV 283 (300)
T ss_pred EeCCCcceE---EECCCCCEEEEE-c--CCCCeEEEEECCCCcE
Confidence 111111112 223345554432 1 1234688999888774
No 35
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.00 E-value=0.0021 Score=65.01 Aligned_cols=200 Identities=15% Similarity=0.125 Sum_probs=106.3
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccc-cC--CccceeEEccCC-eEEEEEECCCCCCceEEEeecCCC
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~-i~--~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
-.|.+||++|.|..+..|. .+++.+||++|+..+.+ .+ +.+ +..+++++ .+||.... ..|++.+|.|.
T Consensus 41 ~~ft~dG~kllF~s~~dg~--~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T~ 112 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGN--RNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNG-----RSLRRVDLDTL 112 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS---EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETT-----TEEEEEETTT-
T ss_pred CCcCCCCCEEEEEeccCCC--cceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECC-----CeEEEEECCcC
Confidence 3689999999999998875 78999999999987642 22 233 47788888 88998632 47999999886
Q ss_pred CCCceEeeeecCCceEE--EEEEcCCCcEEEEEecC-------------------cceeEEEEEeCCCCCceeEeeeccc
Q 009441 272 QSNDICLYHEKDDIYSL--GLQASESKKFLFIASES-------------------KITRFVFYLDVSKPEELRVLTPRVV 330 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v--~~~~S~Dg~~l~i~~~~-------------------~~~~ev~~~d~~~~~~~~~l~~~~~ 330 (534)
+.++||+-++ .|.- ......|++.++..... ...+.|+.+++.+++ .+.+.....
T Consensus 113 --e~~~vy~~p~-~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~~~~~ 188 (386)
T PF14583_consen 113 --EERVVYEVPD-DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVFEDTD 188 (386)
T ss_dssp ---EEEEEE--T-TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEEESS
T ss_pred --cEEEEEECCc-ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEEecCc
Confidence 4568898654 3432 23345677776543321 124689999999886 666665433
Q ss_pred cee-EEEeeeCCEEEEEEcCCC--CCccEEEEEeCCCCCCceE-EecCCCCceeeeEEEeC--CEEEE-EEeeCCee-EE
Q 009441 331 GVD-TAASHRGNHFFITRRSDE--LFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFI--DHLAV-YEREGGLQ-KI 402 (534)
Q Consensus 331 g~~-~~v~~~g~~lyi~tn~~~--~~~~~L~~~~~~~~~~~~~-li~~~~~~~l~~~~~~~--~~lv~-~~~~~g~~-~l 402 (534)
-.- ..+++....++..+.++. +-.-|+..++.+.. ..| +.+..+...+..=.|.. ..|++ ....++.. .|
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 111 225566667777877632 33358888887543 234 44444443333222333 45544 44455533 56
Q ss_pred EEEECCC
Q 009441 403 TTYRLPA 409 (534)
Q Consensus 403 ~~~~l~~ 409 (534)
+.+++.+
T Consensus 267 ~~~d~~t 273 (386)
T PF14583_consen 267 AGYDPDT 273 (386)
T ss_dssp EEE-TTT
T ss_pred EeeCCCC
Confidence 6677765
No 36
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.90 E-value=0.0018 Score=65.52 Aligned_cols=246 Identities=11% Similarity=0.188 Sum_probs=145.9
Q ss_pred EEEEEECCC--CCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-CCccceeEEccCC-eEEEEEE--CCCCCCceEEEe
Q 009441 193 VGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITM--DEILRPDKAWLH 266 (534)
Q Consensus 193 l~~~~~SPD--G~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-~~~~~~~~Ws~Dg-~l~Y~~~--d~~~r~~~v~~~ 266 (534)
+...-.-|| |..|.|+... .|+..++.+|+.+..+- -++..+..++||| .+.|++. ........+|..
T Consensus 39 M~n~~l~PDI~GD~IiFt~~D------dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v 112 (668)
T COG4946 39 MKNYYLNPDIYGDRIIFTCCD------DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVV 112 (668)
T ss_pred hhhhhcCCcccCcEEEEEech------HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEE
Confidence 334455676 8888888763 47788899998765321 2455678899999 8999764 333445678888
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCc---ceeEEEEEeCCCCCceeEeeecccceeEE-EeeeCCE
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK---ITRFVFYLDVSKPEELRVLTPRVVGVDTA-ASHRGNH 342 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~---~~~ev~~~d~~~~~~~~~l~~~~~g~~~~-v~~~g~~ 342 (534)
....++.+...-|+ ..|.--+.|+|||+.|+.+-.-. .-.++|.+..++.+ ..+|. -|.... +.. ++.
T Consensus 113 ~~e~Ge~kRiTyfG---r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~-~e~Ln---lGpathiv~~-dg~ 184 (668)
T COG4946 113 PSEDGEAKRITYFG---RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK-TEPLN---LGPATHIVIK-DGI 184 (668)
T ss_pred eCCCCcEEEEEEec---cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce-eeecc---CCceeeEEEe-CCE
Confidence 77666544444453 22332356999999887654322 13588999887754 22221 122222 222 234
Q ss_pred EEEEEcC---------CCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCc
Q 009441 343 FFITRRS---------DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP 413 (534)
Q Consensus 343 lyi~tn~---------~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~ 413 (534)
+++--|. .+..+++|+.-.......++ ++.-. ..+...-+.++.+|+....+|.-+|+..+++ |+-
T Consensus 185 ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK-~vdl~--~~vS~PmIV~~RvYFlsD~eG~GnlYSvdld--GkD 259 (668)
T COG4946 185 IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEK-FVDLD--GNVSSPMIVGERVYFLSDHEGVGNLYSVDLD--GKD 259 (668)
T ss_pred EEEccCcccCcccccccCCccceEEEEecCCcceee-eeecC--CCcCCceEEcceEEEEecccCccceEEeccC--Cch
Confidence 4444332 13455666543322111111 22211 1355666778999999999999999999998 662
Q ss_pred ccccCCCceeeecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEE
Q 009441 414 LKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKK 471 (534)
Q Consensus 414 ~~~~~~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~ 471 (534)
++ +...|.+ ...-+.+.+++.+.|+- -+.+|.||+++..++.+.
T Consensus 260 lr-----rHTnFtd----YY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekld 303 (668)
T COG4946 260 LR-----RHTNFTD----YYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLD 303 (668)
T ss_pred hh-----hcCCchh----ccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeee
Confidence 21 1122221 11234455778887653 568999999887765543
No 37
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.84 E-value=0.0041 Score=63.03 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=102.9
Q ss_pred EEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEE--------ccCCeEEEEEECCCCCCceEEE
Q 009441 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEW--------AGNEALVYITMDEILRPDKAWL 265 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~W--------s~Dg~l~Y~~~d~~~r~~~v~~ 265 (534)
.+.+|||||+|.+.-- +....+-|+|+++++.+.+ .++++..-+.+ ..||.+.+.+.+..+. +..
T Consensus 109 ~~~ls~dgk~l~V~n~---~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~---~~~ 182 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQF---SPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN---PKI 182 (352)
T ss_pred eEEECCCCCEEEEecC---CCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc---eEE
Confidence 6899999999886521 1135799999999998764 34443222333 3455444444443332 111
Q ss_pred eecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-----ceeEeeec-------cccee
Q 009441 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-----ELRVLTPR-------VVGVD 333 (534)
Q Consensus 266 ~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-----~~~~l~~~-------~~g~~ 333 (534)
...---..++..+|+. |.| ...||++++++.. ..|+++|+.+.. .+..+... ..|.+
T Consensus 183 ~~~~vf~~~~~~v~~r--P~~-----~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 183 KPTEVFHPEDEYLINH--PAY-----SNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred eeeeeecCCccccccC--Cce-----EcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 1100000011233322 211 2349999887654 678999976543 12222211 11212
Q ss_pred -EEEeeeCCEEEEEEcCCC-----CCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCC-E-EEEEEeeCCeeEEEEE
Q 009441 334 -TAASHRGNHFFITRRSDE-----LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-H-LAVYEREGGLQKITTY 405 (534)
Q Consensus 334 -~~v~~~g~~lyi~tn~~~-----~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~-~-lv~~~~~~g~~~l~~~ 405 (534)
..+.++++++|++.+... .+...|..+|..+.+... .++-. ....++.+.+| . +++..+. ....|.++
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-~i~vG--~~~~~iavS~Dgkp~lyvtn~-~s~~VsVi 327 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-KIELG--HEIDSINVSQDAKPLLYALST-GDKTLYIF 327 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-EEeCC--CceeeEEECCCCCeEEEEeCC-CCCcEEEE
Confidence 336678999999775311 233589999986543211 23322 13667777654 3 3333332 23358888
Q ss_pred ECCCCCC
Q 009441 406 RLPAVGE 412 (534)
Q Consensus 406 ~l~~~g~ 412 (534)
|..+ ++
T Consensus 328 D~~t-~k 333 (352)
T TIGR02658 328 DAET-GK 333 (352)
T ss_pred ECcC-Ce
Confidence 8875 44
No 38
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.79 E-value=0.017 Score=56.79 Aligned_cols=195 Identities=15% Similarity=0.169 Sum_probs=103.9
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC-C-ccceeEEccCCeEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-G-VTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~-~-~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
..+.++|||+.|+.+...+ ..|+++|+.+++.+.. ++ + ....++|+|||.++++.... ...++.++..+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~----~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~---~~~~~~~d~~~~ 147 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDD----NLVTVIDIETRKVLAE-IPVGVEPEGMAVSPDGKIVVNTSET---TNMAHFIDTKTY 147 (300)
T ss_pred cEEEECCCCCEEEEEcCCC----CeEEEEECCCCeEEeE-eeCCCCcceEEECCCCCEEEEEecC---CCeEEEEeCCCC
Confidence 4568999999887664322 3799999998776542 22 1 23458999999444444321 123444555443
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccc-----ce---eEEEeeeCCEE
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-----GV---DTAASHRGNHF 343 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~-----g~---~~~v~~~g~~l 343 (534)
... ..+.....+ ..+.+++||+++++... ....+++.++++++..+.+..... .. ...+++++..+
T Consensus 148 ~~~-~~~~~~~~~---~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 148 EIV-DNVLVDQRP---RFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred eEE-EEEEcCCCc---cEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 111 111111111 23678999999877533 234678888876541122211100 11 12356777777
Q ss_pred EEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 344 yi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
|+.... +.++...++.+..... .+... ..+..+.+.+ ++|++....+| .|.++++.+ ++
T Consensus 222 ~~~~~~----~~~i~v~d~~~~~~~~-~~~~~--~~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~-~~ 282 (300)
T TIGR03866 222 FVALGP----ANRVAVVDAKTYEVLD-YLLVG--QRVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAA-LK 282 (300)
T ss_pred EEEcCC----CCeEEEEECCCCcEEE-EEEeC--CCcceEEECCCCCEEEEEcCCCC--eEEEEECCC-Cc
Confidence 665432 2357777775432211 22222 1355566644 45555443344 588889885 44
No 39
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.043 Score=61.76 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=69.8
Q ss_pred CEEEEEEee--CCeeEEEEEECCCCCCcccccCCCceeeecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEE-ECCC
Q 009441 388 DHLAVYERE--GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDY-DMDM 464 (534)
Q Consensus 388 ~~lv~~~~~--~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~-d~~~ 464 (534)
+.+++.... -+..+|+.+++.. +. +..++ ..+....+.+...+.+.....+.+..+.+..|...+.. +.++
T Consensus 400 ~~i~f~~~~~~~~~~~ly~i~~~~-~~-~~~lt----~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~ 473 (755)
T KOG2100|consen 400 NRIYFDAYEEDPSERHLYSISLGS-GT-VESLT----CSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKN 473 (755)
T ss_pred ceEEEEecCCCCCceEEEEEEccc-cc-ccccc----ccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeecccccc
Confidence 577777666 4566788887763 22 11111 01110111222223333456677777777777542211 1111
Q ss_pred -CcEEEEEEcccc----CCCCCCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCc
Q 009441 465 -GISVLKKIETVL----GGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEV 528 (534)
Q Consensus 465 -~~~~~~~~~~~~----~~~d~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~ 528 (534)
.+...+...... ..+.......+.+.. ||....+.++.|+++ ...++.|+|+..|||++.
T Consensus 474 ~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~---~~~~~~~~~~lP~~~-~~~~kyPllv~~yGGP~s 538 (755)
T KOG2100|consen 474 SKTIVVLETNEELKKTIENVALPIVEFGKIEI---DGITANAILILPPNF-DPSKKYPLLVVVYGGPGS 538 (755)
T ss_pred ceEEEEeccChhhHHHhhcccCCcceeEEEEe---ccEEEEEEEecCCCC-CCCCCCCEEEEecCCCCc
Confidence 111222211110 011111223334433 999999999999999 888899999999999983
No 40
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.0006 Score=68.69 Aligned_cols=201 Identities=12% Similarity=0.164 Sum_probs=119.3
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
-++..|.+|||+++||+. |. ...|+++...|++.+.- .|++....+.|+.||..++.... ..+||.++++
T Consensus 304 ~~~e~FeVShd~~fia~~----G~-~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~----~GeV~v~nl~ 374 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIA----GN-NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG----TGEVYVWNLR 374 (514)
T ss_pred chhheeEecCCCCeEEEc----cc-CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC----CceEEEEecC
Confidence 367789999999999985 43 35799999999987753 67887778999999954455421 2389999999
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC-CCceeEeeec---cccee-EEEeeeCCEEE
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PEELRVLTPR---VVGVD-TAASHRGNHFF 344 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~-~~~~~~l~~~---~~g~~-~~v~~~g~~ly 344 (534)
+... .-.|.+.+.-.-..++.|.+|+|++..+.++-- .||-.+..- ...++++..- ..++. ..+.|+..-|.
T Consensus 375 ~~~~--~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV-NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 375 QNSC--LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV-NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred Ccce--EEEEeecCccceeeeeecCCCceEEeccCcceE-EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 7621 223433232234457889999998876655321 122211110 0023333221 11122 23678888888
Q ss_pred EEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC-CEEEEEEeeCCeeEEEEE
Q 009441 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTY 405 (534)
Q Consensus 345 i~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~ 405 (534)
|.++. .....||+-++--+ ...+|-.+..+-..+..++..+ ...+...+++|+..|+.+
T Consensus 452 iaS~~-~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 452 IASRV-KKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhc-cccceEEEecccee-eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 88875 34556776654321 2234511122212345555555 456667778887777654
No 41
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.053 Score=53.63 Aligned_cols=262 Identities=15% Similarity=0.125 Sum_probs=129.9
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCcc-ceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVT-ASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~-~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
...+.|+|++|+|--....+..-...-+-+|-.+|+.... .+++.. ..++-++||++.|+.+-.. ..|-...+
T Consensus 42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~---g~v~v~p~ 118 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS---GSVSVYPL 118 (346)
T ss_pred CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC---ceEEEEEc
Confidence 4456889998876555444222234455556666764321 344432 3478888887777764211 23333333
Q ss_pred CC---CCCCceEeee-ec------CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-c---eeEeeecccceeE
Q 009441 269 EA---DQSNDICLYH-EK------DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-E---LRVLTPRVVGVDT 334 (534)
Q Consensus 269 gt---~~~~d~lv~~-e~------d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~---~~~l~~~~~g~~~ 334 (534)
.+ -+.--.++.. +. ..........+||+++|++..- ....+++.+++++. . ...+ +...|...
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRH 195 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFLYDLDDGKLTPADPAEV-KPGAGPRH 195 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEEEEcccCcccccccccc-CCCCCcce
Confidence 22 1111011111 11 1111223568999999887543 34566777776654 1 1122 33344443
Q ss_pred E-EeeeCCEEEEEEcCCCCCccEEEEEeCCCC--CCceE----EecCCC--CceeeeEEEeCCEEEEEEeeCCeeEEEEE
Q 009441 335 A-ASHRGNHFFITRRSDELFNSELLACPVDNT--SETTV----LIPHRE--SVKLQDIQLFIDHLAVYEREGGLQKITTY 405 (534)
Q Consensus 335 ~-v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~--~~~~~----li~~~~--~~~l~~~~~~~~~lv~~~~~~g~~~l~~~ 405 (534)
- +.++++..|+++-. +..+.....+.. +.... .+|++. .....++.+..+.=++.....|...|.++
T Consensus 196 i~FHpn~k~aY~v~EL----~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 196 IVFHPNGKYAYLVNEL----NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred EEEcCCCcEEEEEecc----CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 3 44555555555432 245555544331 11111 344432 23456677766544444444566678777
Q ss_pred ECCCCCCcccccCCCceee-ecCceeeE-eCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEEE
Q 009441 406 RLPAVGEPLKSLQGGKSVE-FIDPVYSI-DPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI 472 (534)
Q Consensus 406 ~l~~~g~~~~~~~~~~~i~-lp~~~~~i-~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~~ 472 (534)
..+.+|..+. .+. .+..+ .. ..++.+..++.|+..-+--.+ -++|+.|.++|++.++..
T Consensus 272 ~V~~~~g~L~------~~~~~~teg-~~PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 272 SVDPDGGKLE------LVGITPTEG-QFPRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEcCCCCEEE------EEEEeccCC-cCCccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEeccc
Confidence 7765444221 111 01111 11 124455555555544433333 578999999999877654
No 42
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.71 E-value=0.00061 Score=63.55 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=63.9
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC-ccceeEEccCC-eEEEEEECCCCCCceEEEeecC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~-~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.|..++|||+|+.+|...... ...+.++|++ ++.+. .+.. ....+.|+|+| .++....... ...|..+++.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~---~~~v~lyd~~-~~~i~-~~~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~ 133 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSM---PAKVTLYDVK-GKKIF-SFGTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVR 133 (194)
T ss_pred ceEEEEECcCCCEEEEEEccC---CcccEEEcCc-ccEeE-eecCCCceEEEECCCCCEEEEEEccCC--CcEEEEEECC
Confidence 388899999999998775321 2388999997 44433 2332 23459999999 5655554321 2356677765
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEec
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASE 304 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~ 304 (534)
+. ..+..... .....+.|||||+|++..+.
T Consensus 134 ~~----~~i~~~~~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 134 KK----KKISTFEH-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CC----EEeecccc-CcEEEEEEcCCCCEEEEEEe
Confidence 32 23332212 22456899999999986543
No 43
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.68 E-value=0.07 Score=54.19 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=119.9
Q ss_pred EECCCCCEEEEEEc-----CCCCeEEEEEEEECCCCCeecc-ccCCc--------cceeEEccCCeEEEEEE-CCCCCCc
Q 009441 197 QVSPDNKLVAYAED-----TKGDEIYTVYVIDIETGTPVGK-PLVGV--------TASVEWAGNEALVYITM-DEILRPD 261 (534)
Q Consensus 197 ~~SPDG~~LA~~~d-----~~G~E~~~l~v~dl~tg~~~~~-~i~~~--------~~~~~Ws~Dg~l~Y~~~-d~~~r~~ 261 (534)
.+||||+.|..+.. ..|.+.-.|.|+|+++++.+.+ .++.. ...++.+|||+++|+.+ ++. .
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~---~ 128 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS---P 128 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC---C
Confidence 49999999988877 3455556899999999998764 23211 13588999996667654 211 2
Q ss_pred eEEEeecCCCCC-------CceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeE
Q 009441 262 KAWLHKLEADQS-------NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT 334 (534)
Q Consensus 262 ~v~~~~lgt~~~-------~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~ 334 (534)
.|-..++.+..- .-..+|--.+..|. ....||+.+.++....++...--...-.+. -..+..+. +
T Consensus 129 ~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~---~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~-~~~v~~rP----~ 200 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF---MHCRDGSLAKVGYGTKGNPKIKPTEVFHPE-DEYLINHP----A 200 (352)
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEecCCccE---EEeecCceEEEEecCCCceEEeeeeeecCC-ccccccCC----c
Confidence 444555543310 01122221112222 234677766655443322110000000000 01111111 1
Q ss_pred EEeeeCCEEEEEEcCCCCCccEEEEEeCCCCC---CceE-EecCCC---Cc---eeeeEEEe--CCEEEEEEee------
Q 009441 335 AASHRGNHFFITRRSDELFNSELLACPVDNTS---ETTV-LIPHRE---SV---KLQDIQLF--IDHLAVYERE------ 396 (534)
Q Consensus 335 ~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~---~~~~-li~~~~---~~---~l~~~~~~--~~~lv~~~~~------ 396 (534)
+...++..+++|+. +.|..+|+...+ ...| ++...+ +. -++.+.+. +++||+....
T Consensus 201 -~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 201 -YSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred -eEcCCCcEEEEecC-----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 23434566777764 567777754321 1224 332210 11 12335555 4577775532
Q ss_pred -CCeeEEEEEECCCCCCcccccCCCceeeecCceeeEeCCCCccCcc-EEEEEeccCCCCCeEEEEECCCCcE
Q 009441 397 -GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSR-ILRFHYSSLRTPPSVYDYDMDMGIS 467 (534)
Q Consensus 397 -~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~~~~~~~~~~-~l~~~~sS~~~P~~~y~~d~~~~~~ 467 (534)
++..+|+++|..+ ++.+ ..|.+......+ ..+.+++ .++.. +. ....+..+|.++++.
T Consensus 275 k~~~~~V~ViD~~t-~kvi------~~i~vG~~~~~i---avS~Dgkp~lyvt-n~--~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 275 KTASRFLFVVDAKT-GKRL------RKIELGHEIDSI---NVSQDAKPLLYAL-ST--GDKTLYIFDAETGKE 334 (352)
T ss_pred cCCCCEEEEEECCC-CeEE------EEEeCCCceeeE---EECCCCCeEEEEe-CC--CCCcEEEEECcCCeE
Confidence 2335899999885 5532 244443322222 2344555 44333 22 245688899888763
No 44
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.66 E-value=0.0043 Score=67.62 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=92.3
Q ss_pred EEEEEEECCCCCEEEEEEcC---CCCeEEEEEEEECCCCCeeccccCC-ccceeEEccCC-eEEEEEECC-------CCC
Q 009441 192 SVGCFQVSPDNKLVAYAEDT---KGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-ALVYITMDE-------ILR 259 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~---~G~E~~~l~v~dl~tg~~~~~~i~~-~~~~~~Ws~Dg-~l~Y~~~d~-------~~r 259 (534)
.+.+..+||||+.+||.... .++...+|++.+. +|+..+. ..+ ....+.|+||| .++|..... ...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~l-t~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQV-LEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceee-ecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 46788999999999999852 2334679999997 3443331 222 24569999998 788775321 011
Q ss_pred CceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEE---EeCCCCC----ceeEeeecccce
Q 009441 260 PDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFY---LDVSKPE----ELRVLTPRVVGV 332 (534)
Q Consensus 260 ~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~---~d~~~~~----~~~~l~~~~~g~ 332 (534)
..++|...+..+... . -+ + .-...+.+|+||++|++.+. ..||+ ++..++. .++.+.+...+.
T Consensus 429 ~gql~~~~vd~ge~~-~-~~---~-g~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 429 TGQLARTPVDASAVA-S-RV---P-GPISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred CceEEEEeccCchhh-h-cc---C-CCcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 235666665443211 1 11 1 11335789999999988773 36777 5544443 123344432221
Q ss_pred --eEEEeeeCCEEEEEEcCCCCCccEEEEEeCCCC
Q 009441 333 --DTAASHRGNHFFITRRSDELFNSELLACPVDNT 365 (534)
Q Consensus 333 --~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~ 365 (534)
...| -.++.|++.+.. .+..++.++++..
T Consensus 499 ~~~l~W-~~~~~L~V~~~~---~~~~v~~v~vDG~ 529 (591)
T PRK13616 499 AVSLDW-RTGDSLVVGRSD---PEHPVWYVNLDGS 529 (591)
T ss_pred cccceE-ecCCEEEEEecC---CCCceEEEecCCc
Confidence 1223 345668877653 3456788888753
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.65 E-value=0.0021 Score=64.05 Aligned_cols=191 Identities=14% Similarity=0.166 Sum_probs=99.5
Q ss_pred EEEEEEECCCCCEEE-EEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 192 SVGCFQVSPDNKLVA-YAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA-~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
.|..+.||||.+||+ .+.+ | .+.++|+.+|+.+.. ......+..+|.||| +| .+...+ ..++.+
T Consensus 271 ~V~yi~wSPDdryLlaCg~~----e--~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~-V~Gs~d----r~i~~w 339 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFD----E--VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF-VTGSPD----RTIIMW 339 (519)
T ss_pred ceEEEEECCCCCeEEecCch----H--heeeccCCcchhhhhcccCcCCCcceeEEccCCcee-EecCCC----CcEEEe
Confidence 577889999998765 3333 2 299999999987643 111224568999999 54 333221 356666
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEEeeeCCEEEE
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFI 345 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~g~~lyi 345 (534)
++.... .--++.....-..+++.|+||+++++... ...+.+++.++.. -+.+.....++. ..++. +.=|+
T Consensus 340 dlDgn~---~~~W~gvr~~~v~dlait~Dgk~vl~v~~---d~~i~l~~~e~~~-dr~lise~~~its~~iS~--d~k~~ 410 (519)
T KOG0293|consen 340 DLDGNI---LGNWEGVRDPKVHDLAITYDGKYVLLVTV---DKKIRLYNREARV-DRGLISEEQPITSFSISK--DGKLA 410 (519)
T ss_pred cCCcch---hhcccccccceeEEEEEcCCCcEEEEEec---ccceeeechhhhh-hhccccccCceeEEEEcC--CCcEE
Confidence 664321 11122222223446889999999887552 3456666665432 121232222322 22433 33344
Q ss_pred EEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEE---eC---CEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL---FI---DHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 346 ~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~---~~---~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
+.|-. ...+...|++... ++..=.+.....+.+ |+ +.+++...+++ +||+.+... |+
T Consensus 411 LvnL~---~qei~LWDl~e~~----lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~--kvyIWhr~s-gk 473 (519)
T KOG0293|consen 411 LVNLQ---DQEIHLWDLEENK----LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS--KVYIWHRIS-GK 473 (519)
T ss_pred EEEcc---cCeeEEeecchhh----HHHHhhcccccceEEEeccCCCCcceEEecCCCc--eEEEEEccC-Cc
Confidence 45531 1234445553211 111000111122222 32 36788888776 678887764 55
No 46
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.65 E-value=0.052 Score=56.00 Aligned_cols=202 Identities=14% Similarity=0.153 Sum_probs=110.8
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCee-cc---ccCCccceeEEccCC-eEEEEEECCC--------
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GK---PLVGVTASVEWAGNE-ALVYITMDEI-------- 257 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~-~~---~i~~~~~~~~Ws~Dg-~l~Y~~~d~~-------- 257 (534)
+.+.-.+.||.|-|+| .|+....++|||....+.+ .. .+.+....+.|+.|+ +|.-+..-..
T Consensus 60 ~~vtVAkySPsG~yiA-----SGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIA-----SGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ceeEEEEeCCCceEEe-----ecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 3455668999999888 4777788999998764433 21 233433458999998 8876642110
Q ss_pred --------------------CCCceEEEeecCCCCCCceEeeeecC----------CceEEEEEEcCCCcEEEEEecCcc
Q 009441 258 --------------------LRPDKAWLHKLEADQSNDICLYHEKD----------DIYSLGLQASESKKFLFIASESKI 307 (534)
Q Consensus 258 --------------------~r~~~v~~~~lgt~~~~d~lv~~e~d----------~~~~v~~~~S~Dg~~l~i~~~~~~ 307 (534)
-+|.+=||.-.|++ ..-+.+|+.+. ..|.-.+..||||.+. +++++
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sd-Dn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~F-at~gs-- 210 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSD-DNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRF-ATAGS-- 210 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCceEEEeccC-CCeEEEeeCCCeeeeecccccccceeeEEECCCCCeE-EEecC--
Confidence 01222233222322 12234565431 2333357899999874 44443
Q ss_pred eeEEEEEeCCCCCceeEeee--cccceeEE--EeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeE
Q 009441 308 TRFVFYLDVSKPEELRVLTP--RVVGVDTA--ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDI 383 (534)
Q Consensus 308 ~~ev~~~d~~~~~~~~~l~~--~~~g~~~~--v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~ 383 (534)
...+++.|..+++.+..+-. .-.|-.|. ++|++.+|.-.+.. ..-||+-+.... -..+|.....-+-++.++
T Consensus 211 Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD---kt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD---KTIKIWDVSTNS-LVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC---ceEEEEEeeccc-eEEEeecCCchhceEEEE
Confidence 23578888777652222221 12233343 67888888665542 235665554322 123455544422346678
Q ss_pred EEeCCEEEEEEeeCCeeEEEEEECC
Q 009441 384 QLFIDHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 384 ~~~~~~lv~~~~~~g~~~l~~~~l~ 408 (534)
.|.+++|+.... +| .|-.++.+
T Consensus 287 lWqkd~lItVSl-~G--~in~ln~~ 308 (603)
T KOG0318|consen 287 LWQKDHLITVSL-SG--TINYLNPS 308 (603)
T ss_pred EEeCCeEEEEEc-Cc--EEEEeccc
Confidence 888887765544 34 24445554
No 47
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.62 E-value=0.074 Score=53.83 Aligned_cols=157 Identities=10% Similarity=0.036 Sum_probs=79.8
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECC-CCCeec-ccc--CCccceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVG-KPL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~-tg~~~~-~~i--~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
..+.+||||++|+.+.... ..|.+++++ +|+... ..+ .+....++++|||+++|+.... ...|..+++.
T Consensus 38 ~~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~---~~~v~v~~~~ 110 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN---ANCVSVSPLD 110 (330)
T ss_pred ccEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC---CCeEEEEEEC
Confidence 3468999999987764422 346666665 454321 112 2223458899999777776432 2356666654
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeE-----e-eeccccee-EEEeeeCCE
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV-----L-TPRVVGVD-TAASHRGNH 342 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~-----l-~~~~~g~~-~~v~~~g~~ 342 (534)
+.......+..-.....-..+.++|||+++++... ..+.|+++++++...+.. + .+...+.. ..++++|..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY 188 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence 32111111111001111123568999999876443 344677777754221210 0 11112222 236677777
Q ss_pred EEEEEcCCCCCccEEEEEeCC
Q 009441 343 FFITRRSDELFNSELLACPVD 363 (534)
Q Consensus 343 lyi~tn~~~~~~~~L~~~~~~ 363 (534)
+|+.. . .. ..|...+++
T Consensus 189 lyv~~-~-~~--~~v~v~~~~ 205 (330)
T PRK11028 189 AYCVN-E-LN--SSVDVWQLK 205 (330)
T ss_pred EEEEe-c-CC--CEEEEEEEe
Confidence 77654 3 23 445555543
No 48
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.46 E-value=0.17 Score=52.17 Aligned_cols=285 Identities=15% Similarity=0.093 Sum_probs=127.6
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC-C-ccceeEEccCCeEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-G-VTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~-~-~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
....+||||+++..+ +.+| .+.++|+.+++.+.. +. + ...+++.++||..+|+++- .+..+...+..|-
T Consensus 40 ~~~~~s~Dgr~~yv~-~rdg----~vsviD~~~~~~v~~-i~~G~~~~~i~~s~DG~~~~v~n~---~~~~v~v~D~~tl 110 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVA-NRDG----TVSVIDLATGKVVAT-IKVGGNPRGIAVSPDGKYVYVANY---EPGTVSVIDAETL 110 (369)
T ss_dssp EEEE-TT-SSEEEEE-ETTS----EEEEEETTSSSEEEE-EE-SSEEEEEEE--TTTEEEEEEE---ETTEEEEEETTT-
T ss_pred eEEEecCCCCEEEEE-cCCC----eEEEEECCcccEEEE-EecCCCcceEEEcCCCCEEEEEec---CCCceeEeccccc
Confidence 345789999985554 5555 599999999997763 32 2 2346999999966676642 1345666665443
Q ss_pred CCCceEeeee-c----CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCce--eEeeecccceeEEEeeeCCEEE
Q 009441 272 QSNDICLYHE-K----DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL--RVLTPRVVGVDTAASHRGNHFF 344 (534)
Q Consensus 272 ~~~d~lv~~e-~----d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~--~~l~~~~~g~~~~v~~~g~~ly 344 (534)
+. -..+-.. . .+.-...+..++++...+++.. .+.++|++|..+...+ +.+....--....+++++.+|+
T Consensus 111 e~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk--d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 111 EP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK--DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp -E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET--TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred cc-eeecccccccccccCCCceeEEecCCCCEEEEEEc--cCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 10 0111100 0 0112234556788876555443 3568999998775411 1111111111234677777776
Q ss_pred EEEcCCCCCccEEEEEeCCCCCCceEEecCCCCc---eeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCC-CcccccCCC
Q 009441 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESV---KLQDIQLFIDHLAVYEREGGLQKITTYRLPAVG-EPLKSLQGG 420 (534)
Q Consensus 345 i~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~---~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g-~~~~~~~~~ 420 (534)
+..+. . .++..+|.+.... .++++-.... .+..+--.+-..+......+...+-.+..+... .....+...
T Consensus 188 va~~~---s-n~i~viD~~~~k~-v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 188 VAANG---S-NKIAVIDTKTGKL-VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp EEEGG---G-TEEEEEETTTTEE-EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred ecccc---c-ceeEEEeeccceE-EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 65553 2 2777777754321 1233221110 123332223344544444444433333333101 000111112
Q ss_pred ceeeecCceeeEeCCCCccCccEEEEE-eccCCCCCeEEEEECCCCcEEEEEEccccCCCCCCCcEEEEEEEEcCCCcee
Q 009441 421 KSVEFIDPVYSIDPSESVFSSRILRFH-YSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQI 499 (534)
Q Consensus 421 ~~i~lp~~~~~i~~~~~~~~~~~l~~~-~sS~~~P~~~y~~d~~~~~~~~~~~~~~~~~~d~~~~~~e~v~~~S~DG~~V 499 (534)
++|..+..+ +. ....++++.+++. +.+.. -..+..+|.++.+.. .+..+.. . ..+-.+.+ ++||.+|
T Consensus 263 ~~I~~~G~g--lF-i~thP~s~~vwvd~~~~~~-~~~v~viD~~tl~~~-~~i~~~~---~---~~~~h~ef-~~dG~~v 330 (369)
T PF02239_consen 263 KTIPTQGGG--LF-IKTHPDSRYVWVDTFLNPD-ADTVQVIDKKTLKVV-KTITPGP---G---KRVVHMEF-NPDGKEV 330 (369)
T ss_dssp EEEE-SSSS-----EE--TT-SEEEEE-TT-SS-HT-EEEEECCGTEEE-E-HHHHH---T-----EEEEEE--TTSSEE
T ss_pred EEEECCCCc--ce-eecCCCCccEEeeccCCCC-CceEEEEECcCccee-EEEeccC---C---CcEeccEE-CCCCCEE
Confidence 344443322 11 1235678888877 33444 457889998776421 1111111 1 11233333 4677777
Q ss_pred cEEEEEeC
Q 009441 500 PICIVYRK 507 (534)
Q Consensus 500 P~~lv~~k 507 (534)
=+++-..+
T Consensus 331 ~vS~~~~~ 338 (369)
T PF02239_consen 331 WVSVWDGN 338 (369)
T ss_dssp EEEEE--T
T ss_pred EEEEecCC
Confidence 66655443
No 49
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.41 E-value=0.024 Score=53.20 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=86.4
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccC----CccceeEEccCCeEEEEEECCC---------
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV----GVTASVEWAGNEALVYITMDEI--------- 257 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~----~~~~~~~Ws~Dg~l~Y~~~d~~--------- 257 (534)
.+....++||+++||.+ | +..++++|+.++...+. .++ ++ ..+.|-.||+.+|+..++.
T Consensus 42 qVNrLeiTpdk~~LAaa----~--~qhvRlyD~~S~np~Pv~t~e~h~kNV-taVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAA----G--NQHVRLYDLNSNNPNPVATFEGHTKNV-TAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred ceeeEEEcCCcchhhhc----c--CCeeEEEEccCCCCCceeEEeccCCce-EEEEEeecCeEEEecCCCceEEEEeccC
Confidence 57888999999999975 3 36899999999987543 232 33 3478888898888865431
Q ss_pred ---CC-------------------------CceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCccee
Q 009441 258 ---LR-------------------------PDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITR 309 (534)
Q Consensus 258 ---~r-------------------------~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ 309 (534)
.| ...|+.+++++.....+++=| +..+.-++.+-+||++++ .++++++.
T Consensus 115 ~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe--~~~~i~sl~v~~dgsml~-a~nnkG~c 191 (311)
T KOG0315|consen 115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE--DDTSIQSLTVMPDGSMLA-AANNKGNC 191 (311)
T ss_pred cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC--CCcceeeEEEcCCCcEEE-EecCCccE
Confidence 00 123566666655433333322 112333678899999875 46777766
Q ss_pred EEEEEeCCCCC-ceeEeeeccccee----EEEeeeCCEEEEE
Q 009441 310 FVFYLDVSKPE-ELRVLTPRVVGVD----TAASHRGNHFFIT 346 (534)
Q Consensus 310 ev~~~d~~~~~-~~~~l~~~~~g~~----~~v~~~g~~lyi~ 346 (534)
-+|-+-..... ++.++.+...... .-+++++.+|.--
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 66655443322 4555544322211 2256776655433
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.40 E-value=0.05 Score=56.11 Aligned_cols=193 Identities=16% Similarity=0.273 Sum_probs=97.2
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-----ccCCccceeEEccCC-eEEEEEECCCCCCceEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-----PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-----~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~ 265 (534)
.+..++.||||+++|=+-. + ..++++|=.+|+.+.+ .-.+....++|+||+ +|+-.+-|. ..+||
T Consensus 192 FV~~VRysPDG~~Fat~gs----D-gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk---t~KIW- 262 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS----D-GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK---TIKIW- 262 (603)
T ss_pred ceeeEEECCCCCeEEEecC----C-ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc---eEEEE-
Confidence 4778899999999886533 2 4799999999987642 112222349999999 666555443 23444
Q ss_pred eecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEEeeeCCEEE
Q 009441 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFF 344 (534)
Q Consensus 266 ~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~g~~ly 344 (534)
++.+..-..+++....-.+..++.-|.+| .. |+.+-.+ .+-+++.+++..++.+.....++. ..+.+++.+||
T Consensus 263 -dVs~~slv~t~~~~~~v~dqqvG~lWqkd-~l--ItVSl~G--~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 263 -DVSTNSLVSTWPMGSTVEDQQVGCLWQKD-HL--ITVSLSG--TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred -EeeccceEEEeecCCchhceEEEEEEeCC-eE--EEEEcCc--EEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 33332212222332222234455556633 22 2222211 233445444431222222222222 22556665554
Q ss_pred EEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC-CEEEEEEeeCCeeEEEEEECC
Q 009441 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 345 i~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 408 (534)
--+ -.+.+...+.......+ +.+......|.++...+ +.|+-...++. |+++++.
T Consensus 337 Sgs-----yDG~I~~W~~~~g~~~~-~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~---l~~~~~~ 392 (603)
T KOG0318|consen 337 SGS-----YDGHINSWDSGSGTSDR-LAGKGHTNQIKGMAASESGELFTIGWDDT---LRVISLK 392 (603)
T ss_pred eec-----cCceEEEEecCCccccc-cccccccceEEEEeecCCCcEEEEecCCe---EEEEecc
Confidence 322 22566666654322111 44444445677777766 56665555543 4455443
No 51
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.022 Score=59.02 Aligned_cols=201 Identities=12% Similarity=0.131 Sum_probs=117.8
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec---cccCCccceeEEccCC-eEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG---KPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~---~~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~ 267 (534)
...-|+||-|+||+|-..- ..|.|++..+=..+. ..|+|+- +++|+|-+ -|.|-+-..+..|.++-...
T Consensus 307 ~WP~frWS~DdKy~Arm~~------~sisIyEtpsf~lld~Kslki~gIr-~FswsP~~~llAYwtpe~~~~parvtL~e 379 (698)
T KOG2314|consen 307 KWPIFRWSHDDKYFARMTG------NSISIYETPSFMLLDKKSLKISGIR-DFSWSPTSNLLAYWTPETNNIPARVTLME 379 (698)
T ss_pred ccceEEeccCCceeEEecc------ceEEEEecCceeeecccccCCcccc-CcccCCCcceEEEEcccccCCcceEEEEe
Confidence 3456899999999998744 357777766533332 1466774 49999998 77777654455677666666
Q ss_pred cCCCCC-CceEeeeecCCceEEEEEEcCCCcEEEEEecCcc---------eeEEEEEeCCCCCceeEeeecccc-eeEEE
Q 009441 268 LEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKI---------TRFVFYLDVSKPEELRVLTPRVVG-VDTAA 336 (534)
Q Consensus 268 lgt~~~-~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~---------~~ev~~~d~~~~~~~~~l~~~~~g-~~~~v 336 (534)
+-+.+. ...-||.-.| +.+.|-++|.||.+.+.... +-+|+.++-.+- +....+-.+- ..+.+
T Consensus 380 vPs~~~iRt~nlfnVsD----ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~velke~vi~FaW 453 (698)
T KOG2314|consen 380 VPSKREIRTKNLFNVSD----CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEVVELKESVIAFAW 453 (698)
T ss_pred cCccceeeeccceeeec----cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--Cceeeecchheeeeee
Confidence 544421 0111232212 23567889999998874321 235666653331 1222232222 23558
Q ss_pred eeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceE-EecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECC
Q 009441 337 SHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 337 ~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~-li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~ 408 (534)
++.|++|.+++....+.+-+.+.+... + ..| +|-.-+...-..+.|. +..+++.........|..+|.+
T Consensus 454 EP~gdkF~vi~g~~~k~tvsfY~~e~~-~--~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 454 EPHGDKFAVISGNTVKNTVSFYAVETN-I--KKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred ccCCCeEEEEEccccccceeEEEeecC-C--CchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 999999999987644555566665532 1 234 4433222334455565 3567777666445567888776
No 52
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.31 E-value=0.028 Score=57.00 Aligned_cols=161 Identities=12% Similarity=0.175 Sum_probs=87.5
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCc-cceeEEcc--CC-eEEEEEECC--------------
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-TASVEWAG--NE-ALVYITMDE-------------- 256 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~-~~~~~Ws~--Dg-~l~Y~~~d~-------------- 256 (534)
..+||+.+.|.|..+. .+|+.+|++|++.... .++.. .+...|.. |+ .++......
T Consensus 86 ~~~s~~~~~~~Yv~~~-----~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e 160 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNG-----RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE 160 (386)
T ss_dssp -EE-TTSSEEEEEETT-----TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred eEEecCCCeEEEEECC-----CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence 3689999999996542 2689999999986432 34433 34478853 34 444444311
Q ss_pred ---CCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcC-CCcEEEEEecCc---ceeEEEEEeCCCCCceeEeeecc
Q 009441 257 ---ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESK---ITRFVFYLDVSKPEELRVLTPRV 329 (534)
Q Consensus 257 ---~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~-Dg~~l~i~~~~~---~~~ev~~~d~~~~~~~~~l~~~~ 329 (534)
..-+.+|+..++.++ +...|++++. |.--+..|| |...|+++.... .+..+|+++.++.. .+++.++.
T Consensus 161 ~~~a~p~~~i~~idl~tG--~~~~v~~~~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~ 235 (386)
T PF14583_consen 161 FYEARPHCRIFTIDLKTG--ERKVVFEDTD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRM 235 (386)
T ss_dssp HHHC---EEEEEEETTT----EEEEEEESS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---
T ss_pred HHhhCCCceEEEEECCCC--ceeEEEecCc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCC
Confidence 122468999999887 4678887643 322355566 666666666442 24589999988765 66666665
Q ss_pred ccee--EE-EeeeCCEEEEEEcCCCCCccEEEEEeCCCCC
Q 009441 330 VGVD--TA-ASHRGNHFFITRRSDELFNSELLACPVDNTS 366 (534)
Q Consensus 330 ~g~~--~~-v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~ 366 (534)
.+.. .. +.++|..+++..-..+...+-|+.+++++.+
T Consensus 236 ~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 236 EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 5533 22 7788999888765324556778888887543
No 53
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.30 E-value=0.02 Score=62.54 Aligned_cols=116 Identities=11% Similarity=0.092 Sum_probs=74.2
Q ss_pred EEEEEECCCCCEEEEEEcCC-------CCeEEEEEEEECCCCCeeccccCCccceeEEccCC-eEEEEEECCCCCCceEE
Q 009441 193 VGCFQVSPDNKLVAYAEDTK-------GDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 264 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~-------G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~ 264 (534)
+..++|||||+.|+|..+.+ .+...+++++++++|+... .+++....+.||||| +++|+.. .+||
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~------g~v~ 471 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIG------GKVY 471 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEEC------CEEE
Confidence 67889999999999987631 2234688999998887654 445444569999999 9999872 2677
Q ss_pred E---eecCCCCCCceE-----eeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 265 L---HKLEADQSNDIC-----LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 265 ~---~~lgt~~~~d~l-----v~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
. .+.+.+. ..+ +..... .--.++.|..|+..+ +... .....+|.+++++..
T Consensus 472 Va~Vvr~~~G~--~~l~~~~~l~~~l~-~~~~~l~W~~~~~L~-V~~~-~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 472 LAVVEQTEDGQ--YALTNPREVGPGLG-DTAVSLDWRTGDSLV-VGRS-DPEHPVWYVNLDGSN 530 (591)
T ss_pred EEEEEeCCCCc--eeecccEEeecccC-CccccceEecCCEEE-EEec-CCCCceEEEecCCcc
Confidence 6 3322221 122 211111 112356799999944 4333 344668999998754
No 54
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.30 E-value=0.0086 Score=59.96 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=73.4
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCCeEEEEE-ECCCCCCceEEEe
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALVYIT-MDEILRPDKAWLH 266 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg~l~Y~~-~d~~~r~~~v~~~ 266 (534)
..|+.+++.|+|++|+=+ +-..+.++||+.+++.+-. .-.+++ +++|.+||.+.-+. .|.. .+||
T Consensus 262 ~RVs~VafHPsG~~L~Ta-----sfD~tWRlWD~~tk~ElL~QEGHs~~v~-~iaf~~DGSL~~tGGlD~~---~RvW-- 330 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTA-----SFDSTWRLWDLETKSELLLQEGHSKGVF-SIAFQPDGSLAATGGLDSL---GRVW-- 330 (459)
T ss_pred hhheeeeecCCCceeeec-----ccccchhhcccccchhhHhhcccccccc-eeEecCCCceeeccCccch---hhee--
Confidence 578899999999999854 3346899999999976531 223344 59999999887775 2322 2455
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCC
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~ 317 (534)
++.++ .-++++++ .-.-.+++.+||+|-.|+ +.++.++..||-+...
T Consensus 331 DlRtg--r~im~L~g-H~k~I~~V~fsPNGy~lA-Tgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 331 DLRTG--RCIMFLAG-HIKEILSVAFSPNGYHLA-TGSSDNTCKVWDLRMR 377 (459)
T ss_pred ecccC--cEEEEecc-cccceeeEeECCCceEEe-ecCCCCcEEEeeeccc
Confidence 55555 23455554 333455789999997654 4444455566655443
No 55
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.29 E-value=0.0057 Score=59.36 Aligned_cols=139 Identities=19% Similarity=0.230 Sum_probs=80.0
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCC
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 272 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~ 272 (534)
..+||+|+|||-..+ +.+.|+|.+|=+.... -+..+. .++|+.|+ .++-....+ | .|..+.+.+++
T Consensus 14 c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldki~-yieW~ads~~ilC~~yk~---~-~vqvwsl~Qpe 82 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDKIV-YIEWKADSCHILCVAYKD---P-KVQVWSLVQPE 82 (447)
T ss_pred eeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHHhh-heeeeccceeeeeeeecc---c-eEEEEEeecce
Confidence 479999999998765 7999999988776542 234443 48999998 665554322 1 45555555432
Q ss_pred CCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEEcCC
Q 009441 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 350 (534)
Q Consensus 273 ~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~ 350 (534)
- ..-..|. +.-...+.||||||.|+.++.-...-.||-+....+- -.-.+...-..|.+.++|....+.+.++
T Consensus 83 w--~ckIdeg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 83 W--YCKIDEG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred e--EEEeccC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECCCCceeeeeeccc
Confidence 1 1111222 2223457899999999887654333344544433211 1111111112355667777777777653
No 56
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.29 E-value=0.022 Score=61.12 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=88.1
Q ss_pred cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCCccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 190 ~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
+..+..+..||||++||- |.|..-++|||..+|==+.. .-......+.|+.+| .++=.+.|.+-|.+.+-++
T Consensus 350 ~~~i~~l~YSpDgq~iaT-----G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIAT-----GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccceeeEEECCCCcEEEe-----ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 568899999999999996 44556799999988732211 112234569999999 5555556654444333332
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeE--EEeeeCCEEE
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT--AASHRGNHFF 344 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~--~v~~~g~~ly 344 (534)
+ .--.|..+.|.-+..+++.|.|..+ .+++.+.-+|++.+..+++ +.-+...-+|... .+++.|+.|+
T Consensus 425 r-------NfRTft~P~p~QfscvavD~sGelV--~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 425 R-------NFRTFTSPEPIQFSCVAVDPSGELV--CAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred c-------eeeeecCCCceeeeEEEEcCCCCEE--EeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEE
Confidence 2 1112333344444557778888754 4566677899999998886 4445555555443 3667777554
No 57
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0041 Score=65.83 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=70.6
Q ss_pred CCceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCc-cceeEEccCC-eEE
Q 009441 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALV 250 (534)
Q Consensus 173 ~~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~-~~~~~Ws~Dg-~l~ 250 (534)
.++++++|+|.+.+ ++.+.+..-++|-|++|+||+++..|.++-.|.....+.|+.+.+.+... ++.++|.+|+ +++
T Consensus 107 ~e~~~~ld~~~~~d-d~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~v~~~~~~~~~~~~~~~g~~ 185 (712)
T KOG2237|consen 107 KEEEVFLDPNALGD-DGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTVVIDVKFSGPVWTHDGKGVS 185 (712)
T ss_pred cccceecCCccCCC-CceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCccceeeeeeccCCceeeccCCceE
Confidence 57899999999985 68899999999999999999999999999888888888888777656554 6779999998 898
Q ss_pred EEEEC
Q 009441 251 YITMD 255 (534)
Q Consensus 251 Y~~~d 255 (534)
|.+..
T Consensus 186 y~~w~ 190 (712)
T KOG2237|consen 186 YLAWA 190 (712)
T ss_pred eeeec
Confidence 98753
No 58
>PRK10115 protease 2; Provisional
Probab=97.22 E-value=0.28 Score=54.89 Aligned_cols=163 Identities=9% Similarity=0.059 Sum_probs=94.6
Q ss_pred cceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCc---ceeEEEE
Q 009441 238 TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK---ITRFVFY 313 (534)
Q Consensus 238 ~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~---~~~ev~~ 313 (534)
...+.|+||| .++|.......+.++++..++.++..-...+ . +.. ..+.|++|++.+++..... ...+||+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~--~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-D--NVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-c--Ccc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 3568899999 7888864444556789988886552101111 1 112 2378999999998887642 2368999
Q ss_pred EeCCCCC-ceeEeeecccceeE-E--EeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceE-EecCCCCceeeeEEEeCC
Q 009441 314 LDVSKPE-ELRVLTPRVVGVDT-A--ASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFID 388 (534)
Q Consensus 314 ~d~~~~~-~~~~l~~~~~g~~~-~--v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~-li~~~~~~~l~~~~~~~~ 388 (534)
.++.++. +-+++....++..+ . .+.++..+.+.++.. ....+...+.+.+....| +++...+.. -.+...++
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 280 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQH 280 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCC
Confidence 9998874 34556654333222 1 233666676666542 334444444322221224 555554543 34445567
Q ss_pred EEEEEEeeCC-eeEEEEEECC
Q 009441 389 HLAVYEREGG-LQKITTYRLP 408 (534)
Q Consensus 389 ~lv~~~~~~g-~~~l~~~~l~ 408 (534)
.+++..+.++ ..+|..+++.
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~ 301 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVR 301 (686)
T ss_pred EEEEEEcCCCCCceEEEecCC
Confidence 8888877643 4566666665
No 59
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.18 E-value=0.024 Score=56.42 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=51.7
Q ss_pred EEEEEEECCCCCeeccccC-CccceeEEccCCeEEEEEE---CCC---CCCceEEEeecCCCCCCceEeeeecCCceEE-
Q 009441 217 YTVYVIDIETGTPVGKPLV-GVTASVEWAGNEALVYITM---DEI---LRPDKAWLHKLEADQSNDICLYHEKDDIYSL- 288 (534)
Q Consensus 217 ~~l~v~dl~tg~~~~~~i~-~~~~~~~Ws~Dg~l~Y~~~---d~~---~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v- 288 (534)
.+++|+|.++|+.+. .|+ +..+++.-+|||..+|+.. .+. .|..-|-.++..|-....+++.-. .+.+.+
T Consensus 17 ~rv~viD~d~~k~lG-mi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~-k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLG-MIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP-KPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEE-EEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT-S-B--BS
T ss_pred ceEEEEECCCCcEEE-EeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC-cchheec
Confidence 479999999999876 444 3456788899995555532 111 122223344544321111111100 112221
Q ss_pred ----EEEEcCCCcEEEEEecCcceeEEEEEeCCCC
Q 009441 289 ----GLQASESKKFLFIASESKITRFVFYLDVSKP 319 (534)
Q Consensus 289 ----~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~ 319 (534)
.+..|.||||+++.-- ...+.|-++|++..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAK 128 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTT
T ss_pred ccccceEEccCCcEEEEEcc-CCCCeEEEEECCCC
Confidence 2578999999987532 23345666776654
No 60
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.0044 Score=60.91 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=71.1
Q ss_pred CCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc--CCccceeEEccCC-eEEEEEECCCCCCceEE
Q 009441 188 RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAW 264 (534)
Q Consensus 188 ~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i--~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~ 264 (534)
.|+.-|.+++|.+||..|+=+.- |+ ..|.|+|+++|.-++..- .+.++.+.||||| .||-.+.|. ..+||
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~--gs--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da---vfrlw 265 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASF--GS--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA---VFRLW 265 (445)
T ss_pred CCCceeeEEEEcCCCCEEeeccc--Cc--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc---eeeee
Confidence 35567889999999988875433 33 579999999998766321 1235568999999 666655543 34566
Q ss_pred -EeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEe
Q 009441 265 -LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLD 315 (534)
Q Consensus 265 -~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d 315 (534)
.++.-|. +.-.+ .++..-...|||+|++|++.... ...+|-+.
T Consensus 266 ~e~q~wt~--erw~l----gsgrvqtacWspcGsfLLf~~sg--sp~lysl~ 309 (445)
T KOG2139|consen 266 QENQSWTK--ERWIL----GSGRVQTACWSPCGSFLLFACSG--SPRLYSLT 309 (445)
T ss_pred hhccccee--cceec----cCCceeeeeecCCCCEEEEEEcC--CceEEEEe
Confidence 3433332 11122 12333357799999999987543 23445443
No 61
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.15 E-value=0.37 Score=49.20 Aligned_cols=262 Identities=18% Similarity=0.181 Sum_probs=125.4
Q ss_pred EEEEEECCCCCEEEEEEcCC-CCeEEEEEEEECCCCCeecc-cc--CCc-cceeEEccCCeEEEEEECCCCCCceEEEee
Q 009441 193 VGCFQVSPDNKLVAYAEDTK-GDEIYTVYVIDIETGTPVGK-PL--VGV-TASVEWAGNEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~-G~E~~~l~v~dl~tg~~~~~-~i--~~~-~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
.+.+.+||++++|-.+.... ..-....+-++-++|+.... .+ .+. ...++-++|++++|+.+-. ...|..+.
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~---~g~v~v~~ 115 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG---GGSVSVFP 115 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT---TTEEEEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc---CCeEEEEE
Confidence 34567899997765554432 22234444445444554321 12 222 2236678888777776422 23566666
Q ss_pred cCCCCC--Cce-Ee-eee--cC-----CceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-ceeE----eeecccc
Q 009441 268 LEADQS--NDI-CL-YHE--KD-----DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRV----LTPRVVG 331 (534)
Q Consensus 268 lgt~~~--~d~-lv-~~e--~d-----~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~~~----l~~~~~g 331 (534)
+...-. ... ++ ++. ++ ...-..+.++|||+++++.-.. ...|++.+.+... .+.. -.+...|
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 654210 110 11 111 11 1233457789999999875443 3456666665433 2322 1233344
Q ss_pred eeE-EEeeeCCEEEEEEcCCCCCccEEEEEeCC--CCCCceE----EecCCCC--ceeeeEEEeC--CEEEEEEeeCCee
Q 009441 332 VDT-AASHRGNHFFITRRSDELFNSELLACPVD--NTSETTV----LIPHRES--VKLQDIQLFI--DHLAVYEREGGLQ 400 (534)
Q Consensus 332 ~~~-~v~~~g~~lyi~tn~~~~~~~~L~~~~~~--~~~~~~~----li~~~~~--~~l~~~~~~~--~~lv~~~~~~g~~ 400 (534)
... .+.+++..+|++... . ..|..+++. ....... .+|.... ....++.+.+ ++||+.-+ +..
T Consensus 194 PRh~~f~pdg~~~Yv~~e~--s--~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~ 267 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNEL--S--NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSN 267 (345)
T ss_dssp EEEEEE-TTSSEEEEEETT--T--TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTT
T ss_pred CcEEEEcCCcCEEEEecCC--C--CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCC
Confidence 443 367778888877643 3 345454443 2211111 2333211 1356777774 46776655 344
Q ss_pred EEEEEECCCC-CCcccccCCCceeeecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEEE
Q 009441 401 KITTYRLPAV-GEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI 472 (534)
Q Consensus 401 ~l~~~~l~~~-g~~~~~~~~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~~ 472 (534)
.|.+++++.. |. +.. ...+..... .-..+..+.+++.+++.-..-. --.+|+.|.++|+++....
T Consensus 268 sI~vf~~d~~~g~-l~~---~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~-~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 268 SISVFDLDPATGT-LTL---VQTVPTGGK--FPRHFAFSPDGRYLYVANQDSN-TVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEECTTTTT-EEE---EEEEEESSS--SEEEEEE-TTSSEEEEEETTTT-EEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEecCCCc-eEE---EEEEeCCCC--CccEEEEeCCCCEEEEEecCCC-eEEEEEEeCCCCcEEEecc
Confidence 6778887422 33 211 111221000 0011233456666666543322 2457788888998776654
No 62
>PTZ00421 coronin; Provisional
Probab=97.11 E-value=0.25 Score=52.94 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=86.0
Q ss_pred EEEEEEECC-CCCEEEEEEcCCCCeEEEEEEEECCCCCeec------cccCC---ccceeEEccCC-eEEEEEECCCCCC
Q 009441 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVG------KPLVG---VTASVEWAGNE-ALVYITMDEILRP 260 (534)
Q Consensus 192 ~l~~~~~SP-DG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~------~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~ 260 (534)
.|..+.||| |+++||-+.+ ..+|+|||+.++.... ..+.+ ....++|+|++ .++.+... .
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~-----DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~----D 147 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASE-----DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA----D 147 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeC-----CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC----C
Confidence 477889999 8888776533 3479999998763210 01221 23458999987 67666532 2
Q ss_pred ceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccce--eEEEee
Q 009441 261 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV--DTAASH 338 (534)
Q Consensus 261 ~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~--~~~v~~ 338 (534)
..|..|++.++. ....+.. .......+.+++||+.|+..+. ...|.+.|+.++.....+....... ...+.+
T Consensus 148 gtVrIWDl~tg~--~~~~l~~-h~~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 148 MVVNVWDVERGK--AVEVIKC-HSDQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred CEEEEEECCCCe--EEEEEcC-CCCceEEEEEECCCCEEEEecC---CCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 367777887652 2223322 2233446889999998765433 2356777877654122222211111 122344
Q ss_pred eCCEEEEEEcCCCCCccEEEEEeCCC
Q 009441 339 RGNHFFITRRSDELFNSELLACPVDN 364 (534)
Q Consensus 339 ~g~~lyi~tn~~~~~~~~L~~~~~~~ 364 (534)
.++.++..... ......|...|+.+
T Consensus 222 ~~~~ivt~G~s-~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 222 RKDLIITLGCS-KSQQRQIMLWDTRK 246 (493)
T ss_pred CCCeEEEEecC-CCCCCeEEEEeCCC
Confidence 45544333221 22345666677654
No 63
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.09 E-value=0.11 Score=53.42 Aligned_cols=173 Identities=17% Similarity=0.161 Sum_probs=90.4
Q ss_pred EEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcC
Q 009441 218 TVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE 294 (534)
Q Consensus 218 ~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~ 294 (534)
++.|+|.++++.+. .|+. ....+.+++||+.+|+... ...|-..++.+.+ ++-+-.-...-.++++|+
T Consensus 17 ~v~viD~~t~~~~~-~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~----~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 17 SVAVIDGATNKVVA-RIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGK----VVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEETTT-SEEE-EEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSS----EEEEEE-SSEEEEEEE--
T ss_pred EEEEEECCCCeEEE-EEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCccc----EEEEEecCCCcceEEEcC
Confidence 69999999998876 3432 2445788999966777642 2367788887663 332211122334678999
Q ss_pred CCcEEEEEecCcceeEEEEEeCCCCCceeEeeec-cc------ceeE-EEeeeCCEEEEEEcCCCCCccEEEEEeCCCCC
Q 009441 295 SKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VV------GVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTS 366 (534)
Q Consensus 295 Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~-~~------g~~~-~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~ 366 (534)
||+|+++. +...+.+.++|.++.+..+.+--. .. .+.. ..++.+..++ ++-. ...++..+|..++.
T Consensus 88 DG~~~~v~--n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV-v~lk---d~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 88 DGKYVYVA--NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV-VNLK---DTGEIWVVDYSDPK 161 (369)
T ss_dssp TTTEEEEE--EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE-EEET---TTTEEEEEETTTSS
T ss_pred CCCEEEEE--ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE-EEEc---cCCeEEEEEecccc
Confidence 99998764 333457888998775412222111 00 1111 1234444443 3333 23688888877653
Q ss_pred CceE-EecCCCCceeeeEEEeCC--EEEEEEeeCCeeEEEEEECCC
Q 009441 367 ETTV-LIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 367 ~~~~-li~~~~~~~l~~~~~~~~--~lv~~~~~~g~~~l~~~~l~~ 409 (534)
...- .+.. +..+.+..+..+ ++++.. ++..++.+++..+
T Consensus 162 ~~~~~~i~~--g~~~~D~~~dpdgry~~va~--~~sn~i~viD~~~ 203 (369)
T PF02239_consen 162 NLKVTTIKV--GRFPHDGGFDPDGRYFLVAA--NGSNKIAVIDTKT 203 (369)
T ss_dssp CEEEEEEE----TTEEEEEE-TTSSEEEEEE--GGGTEEEEEETTT
T ss_pred ccceeeecc--cccccccccCcccceeeecc--cccceeEEEeecc
Confidence 2111 2322 234777777654 454433 3445788888764
No 64
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.05 E-value=0.037 Score=55.47 Aligned_cols=189 Identities=16% Similarity=0.188 Sum_probs=102.0
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe-eccccCC---ccceeEEccCCeEEEEE-ECCCCCCceEEEee
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKPLVG---VTASVEWAGNEALVYIT-MDEILRPDKAWLHK 267 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~-~~~~i~~---~~~~~~Ws~Dg~l~Y~~-~d~~~r~~~v~~~~ 267 (534)
|--+.+|++|||||=+.... ...|++..-+ ++. +..++.+ ....+.||||++.+.+. .++ .+++++
T Consensus 227 VWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d-~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e-----~~~lwD 297 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDS---TAIIWIVVYD-VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE-----VLSLWD 297 (519)
T ss_pred EEEEEEcCCCeeEeeccCCc---eEEEEEEecC-cceeeeeeeecccCceEEEEECCCCCeEEecCchH-----heeecc
Confidence 45568999999999764422 1223333222 221 1112332 23558999999433332 332 377778
Q ss_pred cCCCCCCceEeeeecCCceEE-EEEEcCCCcEEEEEecCcceeEEEEEeCCCCC--ceeEeeecccc-eeEEEeeeCCEE
Q 009441 268 LEADQSNDICLYHEKDDIYSL-GLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVG-VDTAASHRGNHF 343 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v-~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~--~~~~l~~~~~g-~~~~v~~~g~~l 343 (534)
..|+. -...|... -++.+ +.+|-|||..++..+.. ..++..++++.. .|+-+.. .. ....+..+|..+
T Consensus 298 v~tgd--~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~d---r~i~~wdlDgn~~~~W~gvr~--~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 298 VDTGD--LRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPD---RTIIMWDLDGNILGNWEGVRD--PKVHDLAITYDGKYV 369 (519)
T ss_pred CCcch--hhhhcccC-cCCCcceeEEccCCceeEecCCC---CcEEEecCCcchhhccccccc--ceeEEEEEcCCCcEE
Confidence 77763 34556543 24544 46799999986654332 456777877643 3432211 11 123366789999
Q ss_pred EEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCC-EEEEEEeeCCeeEEEEEECC
Q 009441 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 344 yi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~-~lv~~~~~~g~~~l~~~~l~ 408 (534)
++++.. +..++ .+..+..... ++.+. ..|.++.+.++ ++++.-..+. .+...|+.
T Consensus 370 l~v~~d---~~i~l--~~~e~~~dr~-lise~--~~its~~iS~d~k~~LvnL~~q--ei~LWDl~ 425 (519)
T KOG0293|consen 370 LLVTVD---KKIRL--YNREARVDRG-LISEE--QPITSFSISKDGKLALVNLQDQ--EIHLWDLE 425 (519)
T ss_pred EEEecc---cceee--echhhhhhhc-ccccc--CceeEEEEcCCCcEEEEEcccC--eeEEeecc
Confidence 888853 22333 3332211100 45443 24888888875 4544444443 35555776
No 65
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.15 Score=49.63 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=95.5
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec---cccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG---KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~---~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
....+|+.|.+||.+... | .+.|+|+.|-..-. -.+..+ ..++||+||+++.++. +...+-.+++-.
T Consensus 27 ~~~~Fs~~G~~lAvGc~n-G----~vvI~D~~T~~iar~lsaH~~pi-~sl~WS~dgr~LltsS----~D~si~lwDl~~ 96 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCAN-G----RVVIYDFDTFRIARMLSAHVRPI-TSLCWSRDGRKLLTSS----RDWSIKLWDLLK 96 (405)
T ss_pred ceEEeccCcceeeeeccC-C----cEEEEEccccchhhhhhccccce-eEEEecCCCCEeeeec----CCceeEEEeccC
Confidence 356899999999998763 4 58899988865322 122223 4599999997767653 334566666644
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-E-----EEeeeCCEEE
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-T-----AASHRGNHFF 344 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~-----~v~~~g~~ly 344 (534)
+..--++.|. .|-+.....--++.+.++...... -++++..++. -+.|-...+|.. + .++..|+.+|
T Consensus 97 gs~l~rirf~--spv~~~q~hp~k~n~~va~~~~~s----p~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 97 GSPLKRIRFD--SPVWGAQWHPRKRNKCVATIMEES----PVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred CCceeEEEcc--CccceeeeccccCCeEEEEEecCC----cEEEEecCCc-eeeccCCCccccccccccccccCCCCEEE
Confidence 3212233442 232333222223444443322221 2555555543 222222223321 1 1344566554
Q ss_pred EEEcCCCCCccEEEEEeCCCCCCceE-EecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECC
Q 009441 345 ITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 345 i~tn~~~~~~~~L~~~~~~~~~~~~~-li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~ 408 (534)
.-| .+++|...+.++.+...| -+.. -..|..+.+. ++.+++...+. .|+.|++.
T Consensus 170 tGt-----sKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDR---vIR~ye~~ 226 (405)
T KOG1273|consen 170 TGT-----SKGKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDR---VIRTYEIS 226 (405)
T ss_pred Eec-----CcceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCc---eEEEEehh
Confidence 322 346788887765443333 1111 1135566554 34666655543 25555543
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.02 E-value=0.33 Score=46.27 Aligned_cols=193 Identities=19% Similarity=0.203 Sum_probs=102.9
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccC-CccceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~-~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.+..+.|+|+|++|+.+.. ...++++|+.+++.... ... .....+.|.+++.++++... ...++.+++.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~~~~ 81 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS----DKTIRLWDLE 81 (289)
T ss_pred CEEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC----CCeEEEEEcC
Confidence 4778899999999998754 24799999988864332 111 12235899999844444422 2367777776
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEEeeeCCEEEEEEc
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 348 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~g~~lyi~tn 348 (534)
+.. ....+.... .....+.+++++++++... ....+++.++........+......+. ..+.+.+. +++...
T Consensus 82 ~~~--~~~~~~~~~-~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 154 (289)
T cd00200 82 TGE--CVRTLTGHT-SYVSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSS 154 (289)
T ss_pred ccc--ceEEEeccC-CcEEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-EEEEEc
Confidence 542 222332211 2234567888877665543 234677777765431222221211122 22444433 333333
Q ss_pred CCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCC--EEEEEEeeCCeeEEEEEECCC
Q 009441 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~--~lv~~~~~~g~~~l~~~~l~~ 409 (534)
. ++.|...++...... ..+... ...+..+.+.++ .+++... +| .+.++++..
T Consensus 155 ~----~~~i~i~d~~~~~~~-~~~~~~-~~~i~~~~~~~~~~~l~~~~~-~~--~i~i~d~~~ 208 (289)
T cd00200 155 Q----DGTIKLWDLRTGKCV-ATLTGH-TGEVNSVAFSPDGEKLLSSSS-DG--TIKLWDLST 208 (289)
T ss_pred C----CCcEEEEEccccccc-eeEecC-ccccceEEECCCcCEEEEecC-CC--cEEEEECCC
Confidence 1 235666666432211 123222 224777777765 4555443 44 577778764
No 67
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.26 Score=52.48 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=104.8
Q ss_pred cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEEC-CCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEE
Q 009441 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDI-ETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWL 265 (534)
Q Consensus 190 ~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl-~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~ 265 (534)
...|..+.|||||++|+= |++..+|+|+|+ +.+..+. .+.+ ....++|+|+|.++.....+ ..|..
T Consensus 203 ~~~v~~~~fs~d~~~l~s-----~s~D~tiriwd~~~~~~~~~-~l~gH~~~v~~~~f~p~g~~i~Sgs~D----~tvri 272 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLS-----GSDDKTLRIWDLKDDGRNLK-TLKGHSTYVTSVAFSPDGNLLVSGSDD----GTVRI 272 (456)
T ss_pred ccceeeeEECCCCcEEEE-----ecCCceEEEeeccCCCeEEE-EecCCCCceEEEEecCCCCEEEEecCC----CcEEE
Confidence 456888999999996664 455689999999 4445443 2322 23559999999665665332 25667
Q ss_pred eecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-c-eeEeeecccc-eeEE--EeeeC
Q 009441 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-E-LRVLTPRVVG-VDTA--ASHRG 340 (534)
Q Consensus 266 ~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~-~~~l~~~~~g-~~~~--v~~~g 340 (534)
+++.++. -...+.... +....+.+++||++|+.. +. ...+.+-|+.++. . .+.+...... .... +++++
T Consensus 273 Wd~~~~~--~~~~l~~hs-~~is~~~f~~d~~~l~s~--s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 273 WDVRTGE--CVRKLKGHS-DGISGLAFSPDGNLLVSA--SY-DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred EeccCCe--EEEeeeccC-CceEEEEECCCCCEEEEc--CC-CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence 7777642 222333222 233457889999997654 32 4567777877654 1 1222222222 1222 45666
Q ss_pred CEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCC-ceeeeEEEe-CCEEEEEEeeCCeeEEEEEECCC
Q 009441 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRES-VKLQDIQLF-IDHLAVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 341 ~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~-~~l~~~~~~-~~~lv~~~~~~g~~~l~~~~l~~ 409 (534)
+.++..+. +..|...++...........+... .-+..+..+ ...+++....++ .|+++++.+
T Consensus 347 ~~ll~~~~-----d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~--~v~~~~~~s 410 (456)
T KOG0266|consen 347 KYLLSASL-----DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG--SVYVWDSSS 410 (456)
T ss_pred cEEEEecC-----CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCc--eEEEEeCCc
Confidence 65554443 233444444432211112222222 122223323 345555555555 356667664
No 68
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.96 E-value=0.13 Score=52.00 Aligned_cols=157 Identities=11% Similarity=0.161 Sum_probs=79.9
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec----c--cc-CCc-cceeEEccCCeEEEEEECCCCCCceEEE
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG----K--PL-VGV-TASVEWAGNEALVYITMDEILRPDKAWL 265 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~----~--~i-~~~-~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~ 265 (534)
..+.++|||++|..+-. +. -.|.|+|+++...+. . .+ .+. ...++|+|||.++|+.... ...|..
T Consensus 129 ~~~~~~p~g~~l~v~~~-~~---~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~---~~~v~v 201 (330)
T PRK11028 129 HSANIDPDNRTLWVPCL-KE---DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL---NSSVDV 201 (330)
T ss_pred cEeEeCCCCCEEEEeeC-CC---CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC---CCEEEE
Confidence 34578999998865433 22 268999987633221 0 11 121 2348999999777887432 246666
Q ss_pred eecCCCCCCceEeee-----e--cCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-ceeEee--ecccc-eeE
Q 009441 266 HKLEADQSNDICLYH-----E--KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLT--PRVVG-VDT 334 (534)
Q Consensus 266 ~~lgt~~~~d~lv~~-----e--~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~~~l~--~~~~g-~~~ 334 (534)
+++......-+++-. . ..+.+-..+.++|||+++++. +...+.|.+++++... .++.+. +.... ...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~--~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~ 279 (330)
T PRK11028 202 WQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC--DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF 279 (330)
T ss_pred EEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe--cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce
Confidence 665321101111111 1 122333357789999998874 2233455555553322 122221 11111 123
Q ss_pred EEeeeCCEEEEEEcCCCCCccEEEEEe
Q 009441 335 AASHRGNHFFITRRSDELFNSELLACP 361 (534)
Q Consensus 335 ~v~~~g~~lyi~tn~~~~~~~~L~~~~ 361 (534)
.++++|.+||+ +|. +...-.++.++
T Consensus 280 ~~~~dg~~l~v-a~~-~~~~v~v~~~~ 304 (330)
T PRK11028 280 NIDHSGKYLIA-AGQ-KSHHISVYEID 304 (330)
T ss_pred EECCCCCEEEE-EEc-cCCcEEEEEEc
Confidence 46677777765 444 23334454444
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.83 E-value=0.26 Score=46.96 Aligned_cols=186 Identities=15% Similarity=0.125 Sum_probs=100.2
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-c-cCCccceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~-i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.+..+.|+|++++++.+. . ...++++|+.+++.... . ..+....+.|++++.++++... ...|+.+++.
T Consensus 95 ~i~~~~~~~~~~~~~~~~-~----~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~ 165 (289)
T cd00200 95 YVSSVAFSPDGRILSSSS-R----DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ----DGTIKLWDLR 165 (289)
T ss_pred cEEEEEEcCCCCEEEEec-C----CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC----CCcEEEEEcc
Confidence 467789999988777654 1 23699999987765442 1 1222345899998866666531 2357777775
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEEeeeCCEEEEEEc
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 348 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~g~~lyi~tn 348 (534)
+.. ....+.. .......+.++++++.+++... ...+.+.++........+......+. ..+.++ +.+++...
T Consensus 166 ~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 238 (289)
T cd00200 166 TGK--CVATLTG-HTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS 238 (289)
T ss_pred ccc--cceeEec-CccccceEEECCCcCEEEEecC---CCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc
Confidence 442 1223332 1222335788999988877654 45677888765431122212211221 123343 44444443
Q ss_pred CCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCC-EEEEEEeeCCe
Q 009441 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGL 399 (534)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~-~lv~~~~~~g~ 399 (534)
. ++.|...++...... ..+... ...+..+.+.++ .+++....+|.
T Consensus 239 ~----~~~i~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 239 E----DGTIRVWDLRTGECV-QTLSGH-TNSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred C----CCcEEEEEcCCceeE-EEcccc-CCcEEEEEECCCCCEEEEecCCCe
Confidence 2 245656665432211 123322 224777887764 45555555664
No 70
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.77 E-value=0.11 Score=53.12 Aligned_cols=123 Identities=13% Similarity=0.144 Sum_probs=82.0
Q ss_pred EEEEEECCCCCeec--cccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCC
Q 009441 218 TVYVIDIETGTPVG--KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASES 295 (534)
Q Consensus 218 ~l~v~dl~tg~~~~--~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~D 295 (534)
.|-|+|..+|+.-. ..+.+++. +.-++||.+..+.++ ..++|..++.++. .+ +.+....+..+++.|+|+
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~a-v~vs~dGK~~vvaNd----r~el~vididngn--v~-~idkS~~~lItdf~~~~n 454 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEA-VKVSPDGKKVVVAND----RFELWVIDIDNGN--VR-LIDKSEYGLITDFDWHPN 454 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEE-EEEcCCCcEEEEEcC----ceEEEEEEecCCC--ee-EecccccceeEEEEEcCC
Confidence 58888998887543 13334443 777899966566644 3589999998763 23 333334456778999999
Q ss_pred CcEEEEEec-CcceeEEEEEeCCCCCceeEeeecccceeEE--EeeeCCEEEEEEcCC
Q 009441 296 KKFLFIASE-SKITRFVFYLDVSKPEELRVLTPRVVGVDTA--ASHRGNHFFITRRSD 350 (534)
Q Consensus 296 g~~l~i~~~-~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~--v~~~g~~lyi~tn~~ 350 (534)
++||+..-- +..+..+.+.|.++++ .--++.. .+.+|. +++++..||+++++.
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~K-iy~vTT~-ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGK-IYDVTTP-TAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCe-EEEecCC-cccccCcccCCCCcEEEEEeccc
Confidence 999987653 3446678888888764 3333322 123443 788999999999873
No 71
>PTZ00420 coronin; Provisional
Probab=96.71 E-value=0.25 Score=53.65 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=71.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
.|..+.|+|++..++.+...+| +|+|||+.+++.+.. ........++|++||.++.++.. ...|..+++.+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~Dg----tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDS----FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCC----eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 5788999999998876655444 799999999875432 12223346999999965555432 13567777765
Q ss_pred CCCCceEeeeecCCce---EE-EEEEcCCCcEEEEEecCcc-eeEEEEEeCCCC
Q 009441 271 DQSNDICLYHEKDDIY---SL-GLQASESKKFLFIASESKI-TRFVFYLDVSKP 319 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~---~v-~~~~S~Dg~~l~i~~~~~~-~~ev~~~d~~~~ 319 (534)
+. ....+....... .+ ...+++|+++|+....+.. ..+|.+-|+...
T Consensus 199 g~--~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 199 QE--IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred Cc--EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 42 112232211111 11 1235689998776554442 246788887753
No 72
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.57 E-value=0.66 Score=44.53 Aligned_cols=194 Identities=14% Similarity=0.079 Sum_probs=103.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
.|..+.+|+||++.. +.+. ..+++++|+++|+.... +.+ ..-.+++++|++-..+.. |...+..++.
T Consensus 65 ~v~dv~~s~dg~~al-S~sw----D~~lrlWDl~~g~~t~~-f~GH~~dVlsva~s~dn~qivSGS----rDkTiklwnt 134 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFAL-SASW----DGTLRLWDLATGESTRR-FVGHTKDVLSVAFSTDNRQIVSGS----RDKTIKLWNT 134 (315)
T ss_pred EecceEEccCCceEE-eccc----cceEEEEEecCCcEEEE-EEecCCceEEEEecCCCceeecCC----Ccceeeeeee
Confidence 578889999998643 3332 35899999999976542 222 234599999983333322 2234444444
Q ss_pred CCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee--EEEeeeCCEEEEE
Q 009441 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD--TAASHRGNHFFIT 346 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~--~~v~~~g~~lyi~ 346 (534)
-+.. -..+-++...+|.--+.++|...-.+|.+.+.+. .|-+-|+++-+ ++.-.....|.. ..++++|.-+.
T Consensus 135 ~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslca-- 208 (315)
T KOG0279|consen 135 LGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK-TVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCA-- 208 (315)
T ss_pred cccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc-eEEEEccCCcc-hhhccccccccEEEEEECCCCCEEe--
Confidence 2221 1112222113454457889986333333333322 23444555532 332333333322 22677766332
Q ss_pred EcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCC
Q 009441 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 347 tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~ 409 (534)
. +...++++..|++.... +..-.....|..+.+.++..++...-+. -|.++++++
T Consensus 209 --s-Ggkdg~~~LwdL~~~k~---lysl~a~~~v~sl~fspnrywL~~at~~--sIkIwdl~~ 263 (315)
T KOG0279|consen 209 --S-GGKDGEAMLWDLNEGKN---LYSLEAFDIVNSLCFSPNRYWLCAATAT--SIKIWDLES 263 (315)
T ss_pred --c-CCCCceEEEEEccCCce---eEeccCCCeEeeEEecCCceeEeeccCC--ceEEEeccc
Confidence 1 34668999999976432 2222222346667766776555443322 377888885
No 73
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.45 E-value=0.018 Score=57.16 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=59.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
-+..+.+||||++||=+.- .-.++++|..+|+.+. .+.+ ....++|+.|.+++.....+. .-+||. +
T Consensus 369 lVn~V~fSPd~r~IASaSF-----DkSVkLW~g~tGk~la-sfRGHv~~VYqvawsaDsRLlVS~SkDs--TLKvw~--V 438 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASF-----DKSVKLWDGRTGKFLA-SFRGHVAAVYQVAWSADSRLLVSGSKDS--TLKVWD--V 438 (480)
T ss_pred heeeEEECCCccEEEEeec-----ccceeeeeCCCcchhh-hhhhccceeEEEEeccCccEEEEcCCCc--eEEEEE--e
Confidence 4677899999999996533 2469999999999886 3332 234599999998887764221 124443 3
Q ss_pred CCCCCCceEeee---ecCCceEEEEEEcCCCcEEE
Q 009441 269 EADQSNDICLYH---EKDDIYSLGLQASESKKFLF 300 (534)
Q Consensus 269 gt~~~~d~lv~~---e~d~~~~v~~~~S~Dg~~l~ 300 (534)
.+. .+.++ ..|+-| .+.|||||+.++
T Consensus 439 ~tk----Kl~~DLpGh~DEVf--~vDwspDG~rV~ 467 (480)
T KOG0271|consen 439 RTK----KLKQDLPGHADEVF--AVDWSPDGQRVA 467 (480)
T ss_pred eee----eecccCCCCCceEE--EEEecCCCceee
Confidence 322 12222 112223 367999999754
No 74
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.95 Score=43.34 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=44.8
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec-cccCCc---cceeEEccCCeEEEEEECCCCCCceEEEe
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGV---TASVEWAGNEALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~-~~i~~~---~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~ 266 (534)
-+|.+++|||.|++||-+.- ..+..|+.-..|+.-- ..|+|- .-.++|+++|.++=+.. |...||.+
T Consensus 62 rsVRsvAwsp~g~~La~aSF-----D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCS----RDKSVWiW 132 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASF-----DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCS----RDKSVWIW 132 (312)
T ss_pred heeeeeeecCCCcEEEEeec-----cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEee----CCCeEEEE
Confidence 47899999999999997643 2456666555555422 145442 23599999995444432 33467777
Q ss_pred ecC
Q 009441 267 KLE 269 (534)
Q Consensus 267 ~lg 269 (534)
.+.
T Consensus 133 e~d 135 (312)
T KOG0645|consen 133 EID 135 (312)
T ss_pred Eec
Confidence 765
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.25 E-value=1.2 Score=42.87 Aligned_cols=222 Identities=14% Similarity=0.167 Sum_probs=116.8
Q ss_pred EEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEc-cCCeEEEEEECCCCCCceEEEeecCCCCC
Q 009441 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWA-GNEALVYITMDEILRPDKAWLHKLEADQS 273 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws-~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~ 273 (534)
++.|.+....|.|+ |..+. +|+.++.++++......+. ..+++.. ++|.+|.... ..+...++.++
T Consensus 4 gp~~d~~~g~l~~~-D~~~~---~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~------~~~~~~d~~~g-- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV-DIPGG---RIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADS------GGIAVVDPDTG-- 70 (246)
T ss_dssp EEEEETTTTEEEEE-ETTTT---EEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEET------TCEEEEETTTT--
T ss_pred ceEEECCCCEEEEE-EcCCC---EEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEc------CceEEEecCCC--
Confidence 35677755555444 54443 6888999988764323333 3345665 6666655542 12333366554
Q ss_pred CceEeeeec-C--CceEE-EEEEcCCCcEEEEEecCc----ce--eEEEEEeCCCCCceeEeeecccce-eEEEeeeCCE
Q 009441 274 NDICLYHEK-D--DIYSL-GLQASESKKFLFIASESK----IT--RFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNH 342 (534)
Q Consensus 274 ~d~lv~~e~-d--~~~~v-~~~~S~Dg~~l~i~~~~~----~~--~ev~~~d~~~~~~~~~l~~~~~g~-~~~v~~~g~~ 342 (534)
+-+.++... + +.... ++.+++||+ |.++.... .. ..+|.++.+ ++ ...+....... -..++++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchh
Confidence 223344331 1 22333 688999999 44443221 11 679999987 33 33333321111 1236788888
Q ss_pred EEEEEcCCCCCccEEEEEeCCCCCC--ceE--EecCCCC-ceeeeEEEeC-CEEEEEEeeCCeeEEEEEECCCCCCcccc
Q 009441 343 FFITRRSDELFNSELLACPVDNTSE--TTV--LIPHRES-VKLQDIQLFI-DHLAVYEREGGLQKITTYRLPAVGEPLKS 416 (534)
Q Consensus 343 lyi~tn~~~~~~~~L~~~~~~~~~~--~~~--li~~~~~-~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~g~~~~~ 416 (534)
||+.-. .+.+|++++++.... ... ++..... ....++.+.. +.|++.....+ +|.+++.+ |+.+
T Consensus 148 lyv~ds----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~--~I~~~~p~--G~~~-- 217 (246)
T PF08450_consen 148 LYVADS----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG--RIVVFDPD--GKLL-- 217 (246)
T ss_dssp EEEEET----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT--EEEEEETT--SCEE--
T ss_pred eeeccc----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC--EEEEECCC--ccEE--
Confidence 887433 346799988864321 111 2222222 1478888865 57777766444 78888887 7743
Q ss_pred cCCCceeeecCce-eeEeCCCCccCccEEEEEe
Q 009441 417 LQGGKSVEFIDPV-YSIDPSESVFSSRILRFHY 448 (534)
Q Consensus 417 ~~~~~~i~lp~~~-~~i~~~~~~~~~~~l~~~~ 448 (534)
..|.+|... ..+. +. ..+.++|+++-
T Consensus 218 ----~~i~~p~~~~t~~~-fg-g~~~~~L~vTt 244 (246)
T PF08450_consen 218 ----REIELPVPRPTNCA-FG-GPDGKTLYVTT 244 (246)
T ss_dssp ----EEEE-SSSSEEEEE-EE-STTSSEEEEEE
T ss_pred ----EEEcCCCCCEEEEE-EE-CCCCCEEEEEe
Confidence 467777321 1111 11 12456777664
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.44 Score=46.36 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=80.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCCeEEEEEECCCCCCceEEEeec--
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL-- 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l-- 268 (534)
.|..+..||-+.... .|+..-++++||+.+.+-... .+.+ ..-.++.|.| ++|..-.... .|..+++
T Consensus 102 ~V~sL~~sP~~d~Fl-----S~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~G-LifA~~~~~~---~IkLyD~Rs 171 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFL-----SSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEG-LIFALANGSE---LIKLYDLRS 171 (311)
T ss_pred eEEEEEecCCCCeEE-----ecccCCeEEeeEecCCCCceEEecCC-CcceeECCCC-cEEEEecCCC---eEEEEEecc
Confidence 577788888654322 233335899999986553321 1122 2237888887 4444322221 4444444
Q ss_pred -CCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEe--eecccc--eeEEEeeeCCEE
Q 009441 269 -EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL--TPRVVG--VDTAASHRGNHF 343 (534)
Q Consensus 269 -gt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l--~~~~~g--~~~~v~~~g~~l 343 (534)
+.++- ......+++..-+-.+.+|+|||+|+++++. +.+|++|.=++.-...+ .+...+ ....+.|++..+
T Consensus 172 ~dkgPF-~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 172 FDKGPF-TTFSITDNDEAEWTDLEFSPDGKSILLSTNA---SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred cCCCCc-eeEccCCCCccceeeeEEcCCCCEEEEEeCC---CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 33322 1222222222223458899999999997653 46788887665411111 111111 234466766544
Q ss_pred EEEEcCCCCCccEEEEEeCCCC
Q 009441 344 FITRRSDELFNSELLACPVDNT 365 (534)
Q Consensus 344 yi~tn~~~~~~~~L~~~~~~~~ 365 (534)
+. + +.+++|....++++
T Consensus 248 l~-g----s~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 248 LS-G----SDDGTIHVWNLETG 264 (311)
T ss_pred EE-e----cCCCcEEEEEcCCC
Confidence 32 2 23356776666543
No 77
>PTZ00420 coronin; Provisional
Probab=96.18 E-value=2.5 Score=45.96 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=68.0
Q ss_pred EEEEEEECCC-CCEEEEEEcCCCCeEEEEEEEECCCCCe-ec---c---ccC---CccceeEEccCC-eEEEEEECCCCC
Q 009441 192 SVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTP-VG---K---PLV---GVTASVEWAGNE-ALVYITMDEILR 259 (534)
Q Consensus 192 ~l~~~~~SPD-G~~LA~~~d~~G~E~~~l~v~dl~tg~~-~~---~---~i~---~~~~~~~Ws~Dg-~l~Y~~~d~~~r 259 (534)
.|..+.|+|+ +++||-+. +..+|+|||+.++.. .. + .+. +....++|+|++ .++.+...+
T Consensus 76 ~V~~lafsP~~~~lLASgS-----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D--- 147 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGS-----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD--- 147 (568)
T ss_pred CEEEEEEcCCCCCEEEEEe-----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC---
Confidence 5778899997 66666542 234799999986532 10 0 122 223569999998 665554321
Q ss_pred CceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 260 PDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 260 ~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
..|..|++.+++ ....+. .+.-...+.+++||+.|+.... ...|.+.|+.++.
T Consensus 148 -gtIrIWDl~tg~--~~~~i~--~~~~V~SlswspdG~lLat~s~---D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 148 -SFVNIWDIENEK--RAFQIN--MPKKLSSLKWNIKGNLLSGTCV---GKHMHIIDPRKQE 200 (568)
T ss_pred -CeEEEEECCCCc--EEEEEe--cCCcEEEEEECCCCCEEEEEec---CCEEEEEECCCCc
Confidence 357777887653 122222 1223446889999998765332 2357788887754
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.17 E-value=0.12 Score=57.83 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=67.8
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEEe-e
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLH-K 267 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~-~ 267 (534)
.|..+.||||+++||=. +=...+.|++..+.+.+. .+.+ -.-++.|.|-|.+|=+..|+ |.-+||+. +
T Consensus 131 DV~Dv~Wsp~~~~lvS~-----s~DnsViiwn~~tF~~~~-vl~~H~s~VKGvs~DP~Gky~ASqsdD--rtikvwrt~d 202 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSV-----SLDNSVIIWNAKTFELLK-VLRGHQSLVKGVSWDPIGKYFASQSDD--RTLKVWRTSD 202 (942)
T ss_pred ccceeccCCCccEEEEe-----cccceEEEEccccceeee-eeecccccccceEECCccCeeeeecCC--ceEEEEEccc
Confidence 57788999999998853 223578999999886554 3333 23469999998554444443 33456651 1
Q ss_pred cCCCCCCceEeeee-cCCceEEEEEEcCCCcEEEEEe-cCcceeEEEEEeC
Q 009441 268 LEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIAS-ESKITRFVFYLDV 316 (534)
Q Consensus 268 lgt~~~~d~lv~~e-~d~~~~v~~~~S~Dg~~l~i~~-~~~~~~ev~~~d~ 316 (534)
.|... .-.-.|++ .-..|+..+.|||||+||+... .++..+-+-+++-
T Consensus 203 w~i~k-~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 203 WGIEK-SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ceeeE-eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 11110 00112332 2235788899999999986532 2333344444443
No 79
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.16 E-value=0.19 Score=48.81 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=92.9
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCC--eEEEEEECC----CCCCceEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE--ALVYITMDE----ILRPDKAWL 265 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg--~l~Y~~~d~----~~r~~~v~~ 265 (534)
.+...++||||+||+-+ +-..-|-|||-.+|+...|.--.+..++--..|. .+-|.+..+ .....++..
T Consensus 215 h~EcA~FSPDgqyLvsg-----SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSG-----SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred chhheeeCCCCceEeec-----cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34556899999999853 4345688999999987654111111222223332 233333111 111224444
Q ss_pred eecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-----EEEeeeC
Q 009441 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-----TAASHRG 340 (534)
Q Consensus 266 ~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-----~~v~~~g 340 (534)
|++.|++.- --|+.....-...+.+|+|+..|+-.+.+. .+.+--+..++ ++.+. .|.. ..+..+|
T Consensus 290 Wri~tG~Cl--RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~---tvRiHGlKSGK---~LKEf-rGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 290 WRIETGQCL--RRFDRAHTKGVTCLSFSRDNSQILSASFDQ---TVRIHGLKSGK---CLKEF-RGHSSYVNEATFTDDG 360 (508)
T ss_pred EEEecchHH--HHhhhhhccCeeEEEEccCcchhhcccccc---eEEEeccccch---hHHHh-cCccccccceEEcCCC
Confidence 445444321 113322222223467899999876433321 12232233332 22221 2322 1244556
Q ss_pred CEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC---CEEEEEEeeCCeeEEEEEECCCCCCccc
Q 009441 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI---DHLAVYEREGGLQKITTYRLPAVGEPLK 415 (534)
Q Consensus 341 ~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~---~~lv~~~~~~g~~~l~~~~l~~~g~~~~ 415 (534)
.+++-.+.. +.+-..+..+.+.....-|...+..+..+.+++ .++++--+. ..++++++. |+.++
T Consensus 361 ~~iisaSsD-----gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~q--GQvVr 428 (508)
T KOG0275|consen 361 HHIISASSD-----GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQ--GQVVR 428 (508)
T ss_pred CeEEEecCC-----ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC---CeEEEEecc--ceEEe
Confidence 655443332 222223332221111123344455566777664 355544333 358888887 76543
No 80
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.12 E-value=1.9 Score=43.97 Aligned_cols=244 Identities=14% Similarity=0.119 Sum_probs=110.5
Q ss_pred EEEEEEECCCCCeecc-ccC-C-ccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCceEeeeec-CCceEEEEEE
Q 009441 217 YTVYVIDIETGTPVGK-PLV-G-VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEK-DDIYSLGLQA 292 (534)
Q Consensus 217 ~~l~v~dl~tg~~~~~-~i~-~-~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~-d~~~~v~~~~ 292 (534)
...+-+|.++|+.... .+. . -.+.+++++++.++|...........|..+++......-..+-+-. ...--+.+..
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE
T ss_pred EEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE
Confidence 3344445677765332 111 1 1245888999988888764322344677667654311111221111 2222234678
Q ss_pred cCCCcEEEEEecCcceeEEEEEeCCCCCceeE---eee---------ccccee---EEEeeeCCEEEEEEcCCCCCccEE
Q 009441 293 SESKKFLFIASESKITRFVFYLDVSKPEELRV---LTP---------RVVGVD---TAASHRGNHFFITRRSDELFNSEL 357 (534)
Q Consensus 293 S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~---l~~---------~~~g~~---~~v~~~g~~lyi~tn~~~~~~~~L 357 (534)
++|+++|++.-.. ...+.+++++....+.. +.. ++.+.. ..++++|+.+|+ ++. +...-.+
T Consensus 95 ~~~g~~l~vany~--~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v-~dl-G~D~v~~ 170 (345)
T PF10282_consen 95 DPDGRFLYVANYG--GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV-PDL-GADRVYV 170 (345)
T ss_dssp CTTSSEEEEEETT--TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE-EET-TTTEEEE
T ss_pred ecCCCEEEEEEcc--CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE-Eec-CCCEEEE
Confidence 9999999875433 33455555554221111 111 222221 236677777765 444 4544444
Q ss_pred EEEeCCCCCCceE-EecCCCCceeeeEEEeCC--EEEEEEeeCCeeEEEEEECCC-CCCcccccCCCceee-ecCce--e
Q 009441 358 LACPVDNTSETTV-LIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPA-VGEPLKSLQGGKSVE-FIDPV--Y 430 (534)
Q Consensus 358 ~~~~~~~~~~~~~-li~~~~~~~l~~~~~~~~--~lv~~~~~~g~~~l~~~~l~~-~g~~~~~~~~~~~i~-lp~~~--~ 430 (534)
+.++-........ .+.-....-...+.+.++ ++|+..... ..|.+++++. +|. +..+ ..+. +|... .
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--~~v~v~~~~~~~g~-~~~~---~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS--NTVSVFDYDPSDGS-LTEI---QTISTLPEGFTGE 244 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT--TEEEEEEEETTTTE-EEEE---EEEESCETTSCSS
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC--CcEEEEeecccCCc-eeEE---EEeeecccccccc
Confidence 4443322111111 122222333667777654 666665433 3566666652 133 1110 1111 22110 0
Q ss_pred -eEeCCCCccCccEEEEEeccCCCCCeE--EEEECCCCcEEEEEEc
Q 009441 431 -SIDPSESVFSSRILRFHYSSLRTPPSV--YDYDMDMGISVLKKIE 473 (534)
Q Consensus 431 -~i~~~~~~~~~~~l~~~~sS~~~P~~~--y~~d~~~~~~~~~~~~ 473 (534)
....+..+.+++.|+++-.. ...| |..|..+|+++.+...
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~---~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRG---SNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECT---TTEEEEEEECTTTTTEEEEEEE
T ss_pred CCceeEEEecCCCEEEEEecc---CCEEEEEEEecCCCceEEEEEE
Confidence 01111234567777766544 3444 4555567888766553
No 81
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.10 E-value=0.0092 Score=39.59 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEE
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYV 221 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v 221 (534)
..+.|||||++|+|+.+..+...++|++
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4578999999999999998322355664
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.09 E-value=0.64 Score=44.26 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=87.7
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCC
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 274 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~ 274 (534)
..|||||+++|++-. .-.|-++|..+-+.+.. ...-....+.|..++.+||.++.. .--.|.-+- .-+
T Consensus 112 i~wsp~g~~~~~~~k-----dD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl--G~v~ILsyp----sLk 180 (313)
T KOG1407|consen 112 ITWSPDGEYIAVGNK-----DDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL--GCVEILSYP----SLK 180 (313)
T ss_pred EEEcCCCCEEEEecC-----cccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC--ceEEEEecc----ccc
Confidence 579999999998632 23567777776665542 122123568898777777776421 111222111 101
Q ss_pred ceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccc-cee-EEEeeeCCEEEEEEcCCCC
Q 009441 275 DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVD-TAASHRGNHFFITRRSDEL 352 (534)
Q Consensus 275 d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~-g~~-~~v~~~g~~lyi~tn~~~~ 352 (534)
.+.-.. ..+.-.+-+.++|+|||+++.+.+. -+-+-|++..-=.+. ++|-+ .+. .+++|+|..|.-. .
T Consensus 181 pv~si~-AH~snCicI~f~p~GryfA~GsADA---lvSLWD~~ELiC~R~-isRldwpVRTlSFS~dg~~lASa-----S 250 (313)
T KOG1407|consen 181 PVQSIK-AHPSNCICIEFDPDGRYFATGSADA---LVSLWDVDELICERC-ISRLDWPVRTLSFSHDGRMLASA-----S 250 (313)
T ss_pred cccccc-cCCcceEEEEECCCCceEeeccccc---eeeccChhHhhhhee-eccccCceEEEEeccCcceeecc-----C
Confidence 111111 1233345578999999998765432 222333332110122 22322 222 3477877755322 2
Q ss_pred CccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEE
Q 009441 353 FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYE 394 (534)
Q Consensus 353 ~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~ 394 (534)
...-|-.+.+++++ .-|-|+... ..-.|+|.+++.++.+
T Consensus 251 EDh~IDIA~vetGd-~~~eI~~~~--~t~tVAWHPk~~LLAy 289 (313)
T KOG1407|consen 251 EDHFIDIAEVETGD-RVWEIPCEG--PTFTVAWHPKRPLLAY 289 (313)
T ss_pred ccceEEeEecccCC-eEEEeeccC--CceeEEecCCCceeeE
Confidence 22334444454433 346555432 2557888876554444
No 83
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.04 E-value=0.27 Score=47.14 Aligned_cols=98 Identities=23% Similarity=0.224 Sum_probs=62.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC--ccceeEEccCC-eEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~--~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~l 268 (534)
.+..+.+||||.++|+ |.+..++.++|++.|+-+. .++. ....++|+|.- .+.-.+ + ..|..+++
T Consensus 194 ~v~t~~vSpDGslcas-----Ggkdg~~~LwdL~~~k~ly-sl~a~~~v~sl~fspnrywL~~at-~-----~sIkIwdl 261 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCAS-----GGKDGEAMLWDLNEGKNLY-SLEAFDIVNSLCFSPNRYWLCAAT-A-----TSIKIWDL 261 (315)
T ss_pred cEEEEEECCCCCEEec-----CCCCceEEEEEccCCceeE-eccCCCeEeeEEecCCceeEeecc-C-----CceEEEec
Confidence 4778899999999998 5566899999999998764 3332 23458999987 443322 2 12555566
Q ss_pred CCCCCCceEeeeec------CCceEEEEEEcCCCcEEEE
Q 009441 269 EADQSNDICLYHEK------DDIYSLGLQASESKKFLFI 301 (534)
Q Consensus 269 gt~~~~d~lv~~e~------d~~~~v~~~~S~Dg~~l~i 301 (534)
.+...-+.+-.++. .....+++++|.||..|+-
T Consensus 262 ~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 262 ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 54421111111111 1345678899999998864
No 84
>PTZ00421 coronin; Provisional
Probab=96.00 E-value=0.93 Score=48.62 Aligned_cols=117 Identities=20% Similarity=0.216 Sum_probs=67.3
Q ss_pred EEEEEEECCCCC-EEEEEEcCCCCeEEEEEEEECCCCCeeccccC---CccceeEEccCCeEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SPDG~-~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~---~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
.|..+.|+|++. +||-+ ..+ .+|+|||+.+++.+.. +. +....++|++||.++.+... ...|..++
T Consensus 127 ~V~~l~f~P~~~~iLaSg-s~D----gtVrIWDl~tg~~~~~-l~~h~~~V~sla~spdG~lLatgs~----Dg~IrIwD 196 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASA-GAD----MVVNVWDVERGKAVEV-IKCHSDQITSLEWNLDGSLLCTTSK----DKKLNIID 196 (493)
T ss_pred cEEEEEeCcCCCCEEEEE-eCC----CEEEEEECCCCeEEEE-EcCCCCceEEEEEECCCCEEEEecC----CCEEEEEE
Confidence 577889999875 55533 222 4799999999876542 22 22345999999965555432 23577777
Q ss_pred cCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecC-cceeEEEEEeCCCCC
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES-KITRFVFYLDVSKPE 320 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~-~~~~ev~~~d~~~~~ 320 (534)
+.++. -...+..........+.+.+++..++....+ .....|.+.|+....
T Consensus 197 ~rsg~--~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 197 PRDGT--IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CCCCc--EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 76542 1111221111122234567777766543323 234567777876543
No 85
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.80 E-value=0.2 Score=49.94 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=43.4
Q ss_pred EEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
..++||||+.||= |+...+++++|+.|-.++. +..+ -.-.++|+||| .|.=-..+ ..|..++-.+
T Consensus 120 ~~~fsp~g~~l~t-----GsGD~TvR~WD~~TeTp~~-t~KgH~~WVlcvawsPDgk~iASG~~d-----g~I~lwdpkt 188 (480)
T KOG0271|consen 120 SVQFSPTGSRLVT-----GSGDTTVRLWDLDTETPLF-TCKGHKNWVLCVAWSPDGKKIASGSKD-----GSIRLWDPKT 188 (480)
T ss_pred EEEecCCCceEEe-----cCCCceEEeeccCCCCcce-eecCCccEEEEEEECCCcchhhccccC-----CeEEEecCCC
Confidence 4689999999984 5556899999999876543 2333 13459999999 55433322 2455555433
Q ss_pred C
Q 009441 271 D 271 (534)
Q Consensus 271 ~ 271 (534)
+
T Consensus 189 g 189 (480)
T KOG0271|consen 189 G 189 (480)
T ss_pred C
Confidence 3
No 86
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.67 E-value=0.32 Score=51.83 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=85.4
Q ss_pred CcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCee-----cc-ccCCc-cceeEEccCC-eEEEEEECCCCCC
Q 009441 189 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-----GK-PLVGV-TASVEWAGNE-ALVYITMDEILRP 260 (534)
Q Consensus 189 ~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~-----~~-~i~~~-~~~~~Ws~Dg-~l~Y~~~d~~~r~ 260 (534)
+.-.|...++||||++|||+.-. +++|+.+..-..+ .+ ..... ...+.++-|+ .+||...+.
T Consensus 381 ~~~nIs~~aiSPdg~~Ia~st~~------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~---- 450 (691)
T KOG2048|consen 381 EKENISCAAISPDGNLIAISTVS------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI---- 450 (691)
T ss_pred CccceeeeccCCCCCEEEEeecc------ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccc----
Confidence 34467888999999999998642 2333333321111 11 11111 2347788888 788877331
Q ss_pred ceEEEeecCCCCCCceEeeeec-CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccc--ceeEEEe
Q 009441 261 DKAWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV--GVDTAAS 337 (534)
Q Consensus 261 ~~v~~~~lgt~~~~d~lv~~e~-d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~--g~~~~v~ 337 (534)
..+....+.++..+...=+.+. .......+..|+||.||++.. +...|+++++++.. .+.+..+-+ .....+.
T Consensus 451 ~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~-~~~l~~rln~~vTa~~~~ 526 (691)
T KOG2048|consen 451 FSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLE-SHLLKVRLNIDVTAAAFS 526 (691)
T ss_pred ceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEcccce-eecchhccCcceeeeecc
Confidence 2344445544432221112221 222334578899999998754 34578999998875 444443322 1122244
Q ss_pred e-eCCEEEEEEcCCCCCccEEEEEeCC
Q 009441 338 H-RGNHFFITRRSDELFNSELLACPVD 363 (534)
Q Consensus 338 ~-~g~~lyi~tn~~~~~~~~L~~~~~~ 363 (534)
| ..+.+.+.+. +.+++..++.
T Consensus 527 ~~~~~~lvvats-----~nQv~efdi~ 548 (691)
T KOG2048|consen 527 PFVRNRLVVATS-----NNQVFEFDIE 548 (691)
T ss_pred ccccCcEEEEec-----CCeEEEEecc
Confidence 2 3455665553 2578888774
No 87
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.62 E-value=2.4 Score=41.19 Aligned_cols=119 Identities=17% Similarity=0.081 Sum_probs=68.8
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC-ccceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~-~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
..+.+..+|+||+.+|+.. .++....|++....+..... +.+ ....+.|+++|.++..... .....+++ ...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~--~~~~~~~L~~~~~~~~~~~~--~~g~~l~~PS~d~~g~~W~v~~~--~~~~~~~~-~~~ 96 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVS--EGDGGRSLYVGPAGGPVRPV--LTGGSLTRPSWDPDGWVWTVDDG--SGGVRVVR-DSA 96 (253)
T ss_pred ccccceEECCCCCeEEEEE--EcCCCCEEEEEcCCCcceee--ccCCccccccccCCCCEEEEEcC--CCceEEEE-ecC
Confidence 3567789999999999998 33445678888765433221 232 3455899999866555422 12223333 111
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeC
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~ 316 (534)
++......+--.....-...+.+|+||..+++.+.......||+.-+
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 12111222211111112346889999999998886655577777654
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.58 E-value=1.1 Score=42.61 Aligned_cols=148 Identities=13% Similarity=0.166 Sum_probs=81.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
.+.++.|.-||++||-+.. ..++.|++++.++.+.+ ...+ ....+.|.|-. -+|.+...+ ..+.++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~-----dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d----k~ir~w 92 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF-----DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD----KTIRIW 92 (313)
T ss_pred cceEEEEcccCceeeeccc-----CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC----ceEEEE
Confidence 4677899999999997544 34677888887755432 1111 12358898776 666665422 245555
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccc---eeEEEeeeCCEE
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG---VDTAASHRGNHF 343 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g---~~~~v~~~g~~l 343 (534)
++.++. -....+...+.+ .+.+||||+|+++... ..+|-.+|..+-. .+...+-. .+..+ +..+.+
T Consensus 93 d~r~~k--~~~~i~~~~eni--~i~wsp~g~~~~~~~k---dD~it~id~r~~~---~~~~~~~~~e~ne~~w-~~~nd~ 161 (313)
T KOG1407|consen 93 DIRSGK--CTARIETKGENI--NITWSPDGEYIAVGNK---DDRITFIDARTYK---IVNEEQFKFEVNEISW-NNSNDL 161 (313)
T ss_pred EeccCc--EEEEeeccCcce--EEEEcCCCCEEEEecC---cccEEEEEecccc---eeehhcccceeeeeee-cCCCCE
Confidence 554331 111122222233 3689999999876433 2356666665422 22211111 12223 356778
Q ss_pred EEEEcCCCCCccEEEEEe
Q 009441 344 FITRRSDELFNSELLACP 361 (534)
Q Consensus 344 yi~tn~~~~~~~~L~~~~ 361 (534)
+|+||. ...-.|+..+
T Consensus 162 Fflt~G--lG~v~ILsyp 177 (313)
T KOG1407|consen 162 FFLTNG--LGCVEILSYP 177 (313)
T ss_pred EEEecC--CceEEEEecc
Confidence 899984 2334455443
No 89
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.46 E-value=3.1 Score=41.50 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=66.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
+|....||-||.+||= |+=...++|+++.+|..... ....+ ..+.|.|-+.++....++ ..||++++
T Consensus 108 SVt~~~FshdgtlLAT-----GdmsG~v~v~~~stg~~~~~~~~e~~di-eWl~WHp~a~illAG~~D----GsvWmw~i 177 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLAT-----GDMSGKVLVFKVSTGGEQWKLDQEVEDI-EWLKWHPRAHILLAGSTD----GSVWMWQI 177 (399)
T ss_pred ceEEEEEccCceEEEe-----cCCCccEEEEEcccCceEEEeecccCce-EEEEecccccEEEeecCC----CcEEEEEC
Confidence 6778899999999995 33335799999999976542 12223 337788877666665432 36999999
Q ss_pred CCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEec
Q 009441 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASE 304 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~ 304 (534)
+.. ....+|...+.....+ .++||||.++....
T Consensus 178 p~~--~~~kv~~Gh~~~ct~G-~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 178 PSQ--ALCKVMSGHNSPCTCG-EFIPDGKRILTGYD 210 (399)
T ss_pred CCc--ceeeEecCCCCCcccc-cccCCCceEEEEec
Confidence 875 2445665544333332 57899999875443
No 90
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.46 E-value=0.79 Score=45.91 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=76.9
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccC--------CeEEEEEECCCCCCceE
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGN--------EALVYITMDEILRPDKA 263 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~D--------g~l~Y~~~d~~~r~~~v 263 (534)
...+.+|.|||++.+.--.- ...+-|+|++.++.+.+ .++++..-+-|.++ |++...+.|+.+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TP---a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-- 171 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTP---ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-- 171 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESS---SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE--
T ss_pred ccceEEccCCcEEEEEccCC---CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe--
Confidence 45568999999887652221 25799999999998865 56776433334333 333333333322211
Q ss_pred EEeecCCCCCCceEeee-ecCCceEEEEEEcC-CCcEEEEEecCcceeEEEEEeCCCCC-c----eeEeee--cccc---
Q 009441 264 WLHKLEADQSNDICLYH-EKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPE-E----LRVLTP--RVVG--- 331 (534)
Q Consensus 264 ~~~~lgt~~~~d~lv~~-e~d~~~~v~~~~S~-Dg~~l~i~~~~~~~~ev~~~d~~~~~-~----~~~l~~--~~~g--- 331 (534)
-+ ..-+|. ++|+ .+.....+. ++++++++- +..||-+++.+.. + |..+.. +.++
T Consensus 172 ~~---------~t~~F~~~~dp-~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 172 QK---------STKVFDPDDDP-LFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp EE---------EEEESSTTTS--B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred Ee---------eccccCCCCcc-cccccceECCCCeEEEEec----CCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 00 012443 2333 333334444 456665432 2367888887654 1 222221 1112
Q ss_pred --ee-EEEeeeCCEEEEEEcCC-----CCCccEEEEEeCCCC
Q 009441 332 --VD-TAASHRGNHFFITRRSD-----ELFNSELLACPVDNT 365 (534)
Q Consensus 332 --~~-~~v~~~g~~lyi~tn~~-----~~~~~~L~~~~~~~~ 365 (534)
-+ ..+....++||++.+.+ +.+.-.|+.+|+++.
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~ 279 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH 279 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC
Confidence 11 22334567888887642 124456777777654
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.34 E-value=1.6 Score=47.66 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=23.8
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET 226 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~t 226 (534)
+|-.+.+|+||||||- |.|...|+||.+-.
T Consensus 269 aIw~mKFS~DGKyLAs-----aGeD~virVWkVie 298 (712)
T KOG0283|consen 269 AIWAMKFSHDGKYLAS-----AGEDGVIRVWKVIE 298 (712)
T ss_pred cEEEEEeCCCCceeee-----cCCCceEEEEEEec
Confidence 5778899999999996 45557888887654
No 92
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.13 E-value=8 Score=44.30 Aligned_cols=194 Identities=9% Similarity=0.069 Sum_probs=97.3
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCC----Cee--cc-ccC--CccceeEEccCC-eEEEEEECCCCCCc
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG----TPV--GK-PLV--GVTASVEWAGNE-ALVYITMDEILRPD 261 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg----~~~--~~-~i~--~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~ 261 (534)
.|..+.|||||++||-+-. ...|+|||+.+. ... +. .+. .....+.|.+.. ..+.+... ..
T Consensus 485 ~V~~i~fs~dg~~latgg~-----D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~----Dg 555 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGV-----NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF----EG 555 (793)
T ss_pred cEEEEEECCCCCEEEEEeC-----CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeC----CC
Confidence 4677899999999886532 347899997642 111 00 111 112458898754 55555432 23
Q ss_pred eEEEeecCCCCCCceEeeeecCCceEEEEEEcC-CCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEEeee
Q 009441 262 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHR 339 (534)
Q Consensus 262 ~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~-Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~ 339 (534)
.|..|++.+.+ ....+.+ .......+.+++ |+.+|+..+. ...|.+.++..+.....+... ..+. ..+.+.
T Consensus 556 ~v~lWd~~~~~--~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~ 628 (793)
T PLN00181 556 VVQVWDVARSQ--LVTEMKE-HEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSE 628 (793)
T ss_pred eEEEEECCCCe--EEEEecC-CCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCC
Confidence 56677776542 2223332 223344577876 6776554332 234566676654312222211 1111 123222
Q ss_pred CCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECC
Q 009441 340 GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 340 g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~ 408 (534)
.+.+++.... ++.|...|+.+.......+... ...+..+.+.++..++....++. |.++++.
T Consensus 629 ~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~--ikiWd~~ 690 (793)
T PLN00181 629 SGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNT--LKLWDLS 690 (793)
T ss_pred CCCEEEEEeC----CCeEEEEECCCCCccceEecCC-CCCEEEEEEeCCCEEEEEECCCE--EEEEeCC
Confidence 3333333332 2467777775432111122222 22466777766556666666774 5566665
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=1.7 Score=45.92 Aligned_cols=196 Identities=16% Similarity=0.103 Sum_probs=106.7
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-cc--CCccceeEEccCCeEEEEEECCCCCCceEEEee
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i--~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
..+..+.|+++|++||.+... ..+.|+|+++.+-++. .+ ....+.++|. +.++-+. .+...+..|+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssG----sr~~~I~~~d 286 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSG----SRDGKILNHD 286 (484)
T ss_pred CceEEEEECCCCCEEEEeecC-----CeEEEEehhhccccccccCCcCceeEEEecc--CceEEEe----cCCCcEEEEE
Confidence 357778999999999997663 4799999988766553 12 1224668996 2222222 1233455555
Q ss_pred cCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeE-EEeeeCCEEEEE
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFIT 346 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~-~v~~~g~~lyi~ 346 (534)
+-..+..-. +..+ ...-..++.|++|+++++ +....+.+++-|.........+......+.. .+.++...|+..
T Consensus 287 vR~~~~~~~-~~~~-H~qeVCgLkws~d~~~lA---SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 287 VRISQHVVS-TLQG-HRQEVCGLKWSPDGNQLA---SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred Eecchhhhh-hhhc-ccceeeeeEECCCCCeec---cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE
Confidence 544321111 1211 112345789999999974 4445567777777554323334444333332 366766666544
Q ss_pred EcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCE--EEEEEeeCCeeEEEEEECC
Q 009441 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH--LAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 347 tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~--lv~~~~~~g~~~l~~~~l~ 408 (534)
.. |.....|-..+...... +-.-+...+|..+.|.+.+ |+...-. +..+|.++...
T Consensus 362 GG--Gs~D~~i~fwn~~~g~~---i~~vdtgsQVcsL~Wsk~~kEi~sthG~-s~n~i~lw~~p 419 (484)
T KOG0305|consen 362 GG--GSADRCIKFWNTNTGAR---IDSVDTGSQVCSLIWSKKYKELLSTHGY-SENQITLWKYP 419 (484)
T ss_pred cC--CCcccEEEEEEcCCCcE---ecccccCCceeeEEEcCCCCEEEEecCC-CCCcEEEEecc
Confidence 32 44555555555443221 1111223468888887754 5554321 22255666555
No 94
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.98 E-value=1.9 Score=41.53 Aligned_cols=150 Identities=19% Similarity=0.266 Sum_probs=79.1
Q ss_pred CcEEEEEEEECCCCCEEEEEEcCCCC--eE--EEEEEEECCCCCeeccccCC--ccceeEEccCCeEEEEEECCCCCCce
Q 009441 189 GFYSVGCFQVSPDNKLVAYAEDTKGD--EI--YTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDK 262 (534)
Q Consensus 189 ~~~~l~~~~~SPDG~~LA~~~d~~G~--E~--~~l~v~dl~tg~~~~~~i~~--~~~~~~Ws~Dg~l~Y~~~d~~~r~~~ 262 (534)
.........++|||+ |-++....+. .. ..|+.++.+ |+... ...+ ...+++|+||+..+|.... ...+
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds---~~~~ 157 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADS---FNGR 157 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEET---TTTE
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeeccc---ccce
Confidence 567888999999999 4444432221 11 678889888 65432 2222 2456999999954454422 2357
Q ss_pred EEEeecCCCCC--CceEee-eecCC-ceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEE-
Q 009441 263 AWLHKLEADQS--NDICLY-HEKDD-IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAA- 336 (534)
Q Consensus 263 v~~~~lgt~~~--~d~lv~-~e~d~-~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v- 336 (534)
||++++..... ....++ +-... .+--++.+..+|+.. +.. .....|++++.++ +....+.-...... ..+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~-va~--~~~~~I~~~~p~G-~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW-VAD--WGGGRIVVFDPDG-KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE-EEE--ETTTEEEEEETTS-CEEEEEE-SSSSEEEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE-EEE--cCCCEEEEECCCc-cEEEEEcCCCCCEEEEEEE
Confidence 99988853321 122333 22222 233357888899743 322 2345788888764 31222211111111 223
Q ss_pred eeeCCEEEEEEc
Q 009441 337 SHRGNHFFITRR 348 (534)
Q Consensus 337 ~~~g~~lyi~tn 348 (534)
.++.++|||.|.
T Consensus 234 g~~~~~L~vTta 245 (246)
T PF08450_consen 234 GPDGKTLYVTTA 245 (246)
T ss_dssp STTSSEEEEEEB
T ss_pred CCCCCEEEEEeC
Confidence 356688888774
No 95
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.93 E-value=6.2 Score=41.96 Aligned_cols=198 Identities=17% Similarity=0.234 Sum_probs=99.3
Q ss_pred cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCC--eeccccCC---ccceeEEccCCeEEEEEECCCCCCceEE
Q 009441 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAW 264 (534)
Q Consensus 190 ~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~--~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~ 264 (534)
..++....+||||++||.+... ..++++++.+++ .+. .+.+ ....+.|+|||.+.-+..++ .+++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~-~l~~h~~~v~~~~fs~d~~~l~s~s~D----~tir 228 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSD-----GLIRIWKLEGIKSNLLR-ELSGHTRGVSDVAFSPDGSYLLSGSDD----KTLR 228 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCC-----CcEEEeecccccchhhc-cccccccceeeeEECCCCcEEEEecCC----ceEE
Confidence 3456778999999998876442 357788876666 333 2222 23569999999644444332 3677
Q ss_pred EeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEEeeeCCEE
Q 009441 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHF 343 (534)
Q Consensus 265 ~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~g~~l 343 (534)
.|++-... .-..++. ....+...+.++++|+. ++......+-.+| ++.+++-.+.+....+++. ..+..++..|
T Consensus 229 iwd~~~~~-~~~~~l~-gH~~~v~~~~f~p~g~~-i~Sgs~D~tvriW--d~~~~~~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 229 IWDLKDDG-RNLKTLK-GHSTYVTSVAFSPDGNL-LVSGSDDGTVRIW--DVRTGECVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred EeeccCCC-eEEEEec-CCCCceEEEEecCCCCE-EEEecCCCcEEEE--eccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence 77772221 1122333 23445556889999954 4444433334444 5554431233333333333 2244444433
Q ss_pred EEEEcCCCCCccEEEEEeCCCCCCc-eEEecCCCCc-eeeeEEEeCCEE-EEEEeeCCeeEEEEEECCC
Q 009441 344 FITRRSDELFNSELLACPVDNTSET-TVLIPHRESV-KLQDIQLFIDHL-AVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 344 yi~tn~~~~~~~~L~~~~~~~~~~~-~~li~~~~~~-~l~~~~~~~~~l-v~~~~~~g~~~l~~~~l~~ 409 (534)
++.. .++.|...|+...... .-.+...+.. .+..+...++.. ++....++ .+.++++..
T Consensus 304 --~s~s---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~--~~~~w~l~~ 365 (456)
T KOG0266|consen 304 --VSAS---YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR--TLKLWDLRS 365 (456)
T ss_pred --EEcC---CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC--eEEEEEccC
Confidence 3332 2355666666543311 0012222222 355555545432 22333333 355556653
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=94.86 E-value=0.21 Score=48.58 Aligned_cols=105 Identities=21% Similarity=0.331 Sum_probs=65.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc----ccCCccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~----~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
.+-.+.+|.|...||- |+....|.||.+.||.-+.. .-.++ ..+.|+.|+ .++-.++| ..+..|
T Consensus 265 aVlci~FSRDsEMlAs-----GsqDGkIKvWri~tG~ClRrFdrAHtkGv-t~l~FSrD~SqiLS~sfD-----~tvRiH 333 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLAS-----GSQDGKIKVWRIETGQCLRRFDRAHTKGV-TCLSFSRDNSQILSASFD-----QTVRIH 333 (508)
T ss_pred ceEEEeecccHHHhhc-----cCcCCcEEEEEEecchHHHHhhhhhccCe-eEEEEccCcchhhccccc-----ceEEEe
Confidence 3556788999988884 55556799999999976541 22334 348899998 77665554 356667
Q ss_pred ecCCCCCCceEeeee-cCCceEEEEEEcCCCcEEEEEecCcceeEEE
Q 009441 267 KLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVF 312 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e-~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~ 312 (534)
-+.++. ++-|- ....|.-.+.+|+||.+|+- +++..+-.||
T Consensus 334 GlKSGK----~LKEfrGHsSyvn~a~ft~dG~~iis-aSsDgtvkvW 375 (508)
T KOG0275|consen 334 GLKSGK----CLKEFRGHSSYVNEATFTDDGHHIIS-ASSDGTVKVW 375 (508)
T ss_pred ccccch----hHHHhcCccccccceEEcCCCCeEEE-ecCCccEEEe
Confidence 665542 22211 12234335778999998754 4444444444
No 97
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=94.82 E-value=0.24 Score=55.31 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=72.2
Q ss_pred CCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCC-eEEE-EEECCCCCCceEEEeecCCCCCCce
Q 009441 202 NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVY-ITMDEILRPDKAWLHKLEADQSNDI 276 (534)
Q Consensus 202 G~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg-~l~Y-~~~d~~~r~~~v~~~~lgt~~~~d~ 276 (534)
..+|||..+.+| .|.+.|.+++......+.. +. .+.||||| .+.| ++.....+...||.++|.+.-+.-+
T Consensus 318 ~tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~~~i~-sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~v 392 (912)
T TIGR02171 318 KAKLAFRNDVTG----NLAYIDYTKGASRAVEIEDTISVY-HPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLV 392 (912)
T ss_pred eeeEEEEEcCCC----eEEEEecCCCCceEEEecCCCcee-cCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCce
Confidence 468999998766 8999999887654322332 33 38999999 9999 7665433445799999977643322
Q ss_pred Eeeeec--CCceEEEEEEcCCCcEEEEEecC----cc-----eeEEEEEeCCCCC--ceeEeee
Q 009441 277 CLYHEK--DDIYSLGLQASESKKFLFIASES----KI-----TRFVFYLDVSKPE--ELRVLTP 327 (534)
Q Consensus 277 lv~~e~--d~~~~v~~~~S~Dg~~l~i~~~~----~~-----~~ev~~~d~~~~~--~~~~l~~ 327 (534)
.|=-|. -|+| .+...|..+++.+.+ ++ ...-|.++..+++ .++.|+.
T Consensus 393 kl~ve~aaiprw----rv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~d 452 (912)
T TIGR02171 393 KLPVENAAIPRW----RVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFD 452 (912)
T ss_pred Eeecccccccce----EecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhc
Confidence 221121 1333 455777766665532 11 1235888877765 4555554
No 98
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=94.82 E-value=5.6 Score=41.54 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=95.2
Q ss_pred ceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccc---c--CCccceeEEccCC--
Q 009441 175 EHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---L--VGVTASVEWAGNE-- 247 (534)
Q Consensus 175 eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~---i--~~~~~~~~Ws~Dg-- 247 (534)
+.+++-.+..+.. +..=.-++||-|-+|+|+.+. + .|+|.++ |+..-... + .+ ...++|+|-|
T Consensus 118 g~iv~sf~~~~q~--~~~Wp~~k~s~~D~y~ARvv~---~---sl~i~e~-t~n~~~~p~~~lr~~g-i~dFsisP~~n~ 187 (561)
T COG5354 118 GMIVFSFNGISQP--YLGWPVLKFSIDDKYVARVVG---S---SLYIHEI-TDNIEEHPFKNLRPVG-ILDFSISPEGNH 187 (561)
T ss_pred ceeEeeccccCCc--ccccceeeeeecchhhhhhcc---C---eEEEEec-CCccccCchhhccccc-eeeEEecCCCCC
Confidence 4566655544432 111113589999999999844 3 5888887 55433211 2 23 3468999874
Q ss_pred -eEEEEEECCCCCCceEEEeecCCCCC-CceEeeeecCCceEEEEEEcCCCcEEEEEecCc--------ceeEEEEEeCC
Q 009441 248 -ALVYITMDEILRPDKAWLHKLEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESK--------ITRFVFYLDVS 317 (534)
Q Consensus 248 -~l~Y~~~d~~~r~~~v~~~~lgt~~~-~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~--------~~~ev~~~d~~ 317 (534)
.|.|.+-...+.|.++..+.++.... ....+|+-. .+.+.|-..|+||++.+... +.+.+|++++.
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~----~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS----GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec----ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 67787755556677777777763311 112233321 23467889999998775321 23689999987
Q ss_pred CCCceeEeeecccc-eeEEEeeeCCEEEEEEcC
Q 009441 318 KPEELRVLTPRVVG-VDTAASHRGNHFFITRRS 349 (534)
Q Consensus 318 ~~~~~~~l~~~~~g-~~~~v~~~g~~lyi~tn~ 349 (534)
... .+......+- .++.+++.++.|.+++..
T Consensus 264 e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~ 295 (561)
T COG5354 264 ERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGY 295 (561)
T ss_pred ccc-cceeccccccceeeeecccCCceeEEecc
Confidence 643 3322222222 345688999999998843
No 99
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=1.2 Score=47.14 Aligned_cols=199 Identities=13% Similarity=0.125 Sum_probs=105.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC--eEEEEEECCC--------C--
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE--ALVYITMDEI--------L-- 258 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg--~l~Y~~~d~~--------~-- 258 (534)
.+.++++.|-|.+||= |++..+++||.+.||.-+.. .+.+....++|.|.+ .++-++.... +
T Consensus 402 ~Vr~iSvdp~G~wlas-----GsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLAS-----GSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred eEEEEEecCCcceeee-----cCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 4677899999999984 56667899999999976553 334444569999987 5555544321 0
Q ss_pred ------------C------CceEEEeecCCCC--CCce-EeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCC
Q 009441 259 ------------R------PDKAWLHKLEADQ--SNDI-CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317 (534)
Q Consensus 259 ------------r------~~~v~~~~lgt~~--~~d~-lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~ 317 (534)
. ..++..|.-++.. ...+ ++..- +.-.-.+.|-.+|.||.....+..+..|++-.+.
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec--CCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 0 0011111111000 0000 00000 0001135677899999877777777778888776
Q ss_pred CCCceeEeeeccccee--EEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEE
Q 009441 318 KPEELRVLTPRVVGVD--TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVY 393 (534)
Q Consensus 318 ~~~~~~~l~~~~~g~~--~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~ 393 (534)
... .+..+....|.. ..+.+..-.|++.|.. .|...++......+-+++.. ..|..+.+.. |.|++.
T Consensus 555 K~~-sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~------~vRiYdL~kqelvKkL~tg~--kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 555 KRK-SQSPFRKSKGLVQRVKFHPSKPYLFVATQR------SVRIYDLSKQELVKKLLTGS--KWISSMSIHPNGDNLILG 625 (733)
T ss_pred ccc-ccCchhhcCCceeEEEecCCCceEEEEecc------ceEEEehhHHHHHHHHhcCC--eeeeeeeecCCCCeEEEe
Confidence 643 222222223322 2244444455555543 13334443211000033322 1366677754 788876
Q ss_pred EeeCCeeEEEEEECCC
Q 009441 394 EREGGLQKITTYRLPA 409 (534)
Q Consensus 394 ~~~~g~~~l~~~~l~~ 409 (534)
...+ ++..++++-
T Consensus 626 s~d~---k~~WfDldl 638 (733)
T KOG0650|consen 626 SYDK---KMCWFDLDL 638 (733)
T ss_pred cCCC---eeEEEEccc
Confidence 6543 688888874
No 100
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=94.67 E-value=0.34 Score=48.91 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=63.4
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCee---ccccCCccceeEEccCC-eEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV---GKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~---~~~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~ 267 (534)
.|.+++|-|||..+|= +|- ...-+|||+.+|.-+ ...+..+++ ++|+|+| .+.--+.|. ..+||..+
T Consensus 305 ~v~~iaf~~DGSL~~t----GGl-D~~~RvWDlRtgr~im~L~gH~k~I~~-V~fsPNGy~lATgs~Dn---t~kVWDLR 375 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAAT----GGL-DSLGRVWDLRTGRCIMFLAGHIKEILS-VAFSPNGYHLATGSSDN---TCKVWDLR 375 (459)
T ss_pred ccceeEecCCCceeec----cCc-cchhheeecccCcEEEEecccccceee-EeECCCceEEeecCCCC---cEEEeeec
Confidence 5777899999998873 343 467789999999743 224555655 9999999 443323232 24566444
Q ss_pred cCCCCCCceEeeeecCCceEE-EEEEcCCCcEEEEEecCcceeEEEE
Q 009441 268 LEADQSNDICLYHEKDDIYSL-GLQASESKKFLFIASESKITRFVFY 313 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v-~~~~S~Dg~~l~i~~~~~~~~ev~~ 313 (534)
... .+|.-+-..-.| .+..+|++.+.+++++-..+-.+|.
T Consensus 376 ~r~------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 376 MRS------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ccc------cceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 221 244322111122 4778886666666665555555664
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.57 E-value=0.97 Score=50.81 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=58.4
Q ss_pred cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCC----------CCee-cc------ccC---CccceeEEccCCeE
Q 009441 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----------GTPV-GK------PLV---GVTASVEWAGNEAL 249 (534)
Q Consensus 190 ~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~t----------g~~~-~~------~i~---~~~~~~~Ws~Dg~l 249 (534)
...+..++|||||++||.+ +|...+.|++-+. |... .+ .+. +-...+.|+||+.+
T Consensus 69 ~~sv~CVR~S~dG~~lAsG-----SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASG-----SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred cCceeEEEECCCCCeEeec-----cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 3468889999999999985 4446777777662 1110 00 111 12346899999844
Q ss_pred EEEE-ECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecC
Q 009441 250 VYIT-MDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES 305 (534)
Q Consensus 250 ~Y~~-~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~ 305 (534)
+-+. .| +.|-.++.-+- +-..++.. .....-++.|.|-|+|++-.+.+
T Consensus 144 lvS~s~D-----nsViiwn~~tF--~~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 144 LVSVSLD-----NSVIIWNAKTF--ELLKVLRG-HQSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred EEEeccc-----ceEEEEccccc--eeeeeeec-ccccccceEECCccCeeeeecCC
Confidence 4443 33 24444444333 12223332 22233367889999998755433
No 102
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=94.33 E-value=0.47 Score=53.12 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=41.2
Q ss_pred EEEEEECCCCCEEEEEEcCCC-CeEEEEEEEECCCCC--eeccccCCccceeEE--ccCC--eEEEEEE
Q 009441 193 VGCFQVSPDNKLVAYAEDTKG-DEIYTVYVIDIETGT--PVGKPLVGVTASVEW--AGNE--ALVYITM 254 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G-~E~~~l~v~dl~tg~--~~~~~i~~~~~~~~W--s~Dg--~l~Y~~~ 254 (534)
+-++.|||||++|||.++..| +....|+|.||.+.. .+...++++.- +.| ..+| -|.|++.
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aai-prwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAI-PRWRVLENGDTVIVYVSD 419 (912)
T ss_pred eecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccc-cceEecCCCCeEEEEEcC
Confidence 456899999999999656555 224679999998653 33334555422 566 4556 7888874
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.25 E-value=3.1 Score=39.87 Aligned_cols=119 Identities=14% Similarity=0.100 Sum_probs=71.7
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
+|-.+.++.|.++|. .|+-..++++||+++|+.+.. ..+-..-.+.|+.+| .+++++.+.-+.+..|..+++.
T Consensus 54 avW~~Did~~s~~li-----TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLI-----TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred eEEEEEecCCcceee-----eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 566778888888876 366678999999999998763 122223458899999 5666653333445566666665
Q ss_pred CCC----CCc-eEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCC
Q 009441 270 ADQ----SND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 319 (534)
Q Consensus 270 t~~----~~d-~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~ 319 (534)
.+. +++ .+...-++. -...+-|++-+++|+..-. ...|-..|+.++
T Consensus 129 ~~~~~~~s~ep~~kI~t~~s-kit~a~Wg~l~~~ii~Ghe---~G~is~~da~~g 179 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDS-KITSALWGPLGETIIAGHE---DGSISIYDARTG 179 (327)
T ss_pred CChhhhcccCceEEecCCcc-ceeeeeecccCCEEEEecC---CCcEEEEEcccC
Confidence 332 122 222222222 2234568999999865432 234555666654
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.11 E-value=1.2 Score=46.20 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=95.2
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec-cccCC---ccceeEEccCCeEEEEEECCCC---------
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVG---VTASVEWAGNEALVYITMDEIL--------- 258 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~-~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~--------- 258 (534)
.|..+.++|||+.|.. |.|-.++-||||++-...- ..++. ....++-+||..+.|....+..
T Consensus 467 yiRSckL~pdgrtLiv-----GGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIV-----GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred ceeeeEecCCCceEEe-----ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence 4778899999999987 6678999999998654321 12221 1122555666666665532210
Q ss_pred --------C------------C---------ceEEEeecCCCCCCceEeeeecCCce---EEEEEEcCCCcEEEEEecCc
Q 009441 259 --------R------------P---------DKAWLHKLEADQSNDICLYHEKDDIY---SLGLQASESKKFLFIASESK 306 (534)
Q Consensus 259 --------r------------~---------~~v~~~~lgt~~~~d~lv~~e~d~~~---~v~~~~S~Dg~~l~i~~~~~ 306 (534)
. . +.|.+|++.+.. .+- .-+| .+++..+|.+.|+++...+
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr----qlq---qhdF~SQIfSLg~cP~~dWlavGMen- 613 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR----QLQ---QHDFSSQIFSLGYCPTGDWLAVGMEN- 613 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh----hhh---hhhhhhhheecccCCCccceeeeccc-
Confidence 0 0 112222222110 000 0112 2356678999999987643
Q ss_pred ceeEEEEEeCCCCCceeEeeecccceeEE--EeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEE
Q 009441 307 ITRFVFYLDVSKPEELRVLTPRVVGVDTA--ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQ 384 (534)
Q Consensus 307 ~~~ev~~~d~~~~~~~~~l~~~~~g~~~~--v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~ 384 (534)
+.++++...++++.+ |.-. +....+ +.+-|. +++-|..++. ...++++... -++...+...+...+
T Consensus 614 --s~vevlh~skp~kyq-lhlh-eScVLSlKFa~cGk-wfvStGkDnl--LnawrtPyGa-----siFqskE~SsVlsCD 681 (705)
T KOG0639|consen 614 --SNVEVLHTSKPEKYQ-LHLH-ESCVLSLKFAYCGK-WFVSTGKDNL--LNAWRTPYGA-----SIFQSKESSSVLSCD 681 (705)
T ss_pred --CcEEEEecCCcccee-eccc-ccEEEEEEecccCc-eeeecCchhh--hhhccCcccc-----ceeeccccCcceeee
Confidence 356777766654111 1111 111212 445554 4455554322 2345555432 145445555566777
Q ss_pred Ee-CCEEEEEEeeCCeeEEE
Q 009441 385 LF-IDHLAVYEREGGLQKIT 403 (534)
Q Consensus 385 ~~-~~~lv~~~~~~g~~~l~ 403 (534)
+. +|.++++..-+-...||
T Consensus 682 IS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 682 ISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eccCceEEEecCCCcceEEE
Confidence 74 56777766544333344
No 105
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.99 Score=45.60 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=63.3
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc----CCccceeEEccCC---eEEEEEECCCCCCceE
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL----VGVTASVEWAGNE---ALVYITMDEILRPDKA 263 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i----~~~~~~~~Ws~Dg---~l~Y~~~d~~~r~~~v 263 (534)
-.|..+.+||||++||+. |.+ .++||++++|..+...- +..+....|+.|+ .++....-... ..|
T Consensus 187 ~eV~DL~FS~dgk~lasi----g~d--~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~--~~v 258 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASI----GAD--SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPG--GGV 258 (398)
T ss_pred CccccceeCCCCcEEEEe----cCC--ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCC--Cce
Confidence 368889999999999997 333 78999999996554211 1135567788776 33333221111 112
Q ss_pred EEeecCCCCCCceEeeeecCCce-EE-EEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 264 WLHKLEADQSNDICLYHEKDDIY-SL-GLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 264 ~~~~lgt~~~~d~lv~~e~d~~~-~v-~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
-..++..-.....+-....-..+ .+ .+++|.||+++++.+.+ +.|-+++...
T Consensus 259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d---GsVai~~~~~ 312 (398)
T KOG0771|consen 259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD---GSVAIYDAKS 312 (398)
T ss_pred eEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC---CcEEEEEece
Confidence 22222111000011100000111 22 47899999999997763 3456666544
No 106
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.03 E-value=3.1 Score=39.51 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=105.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~ 267 (534)
-+..+.+|.|.++|.- +|.| -.|+|+|+..-+.-+..+.+ ..-.+.|.-.+ .|+=.+.+ +.-++|-++
T Consensus 102 ivk~~af~~ds~~llt----gg~e-kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd---~tVRLWD~r 173 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLT----GGQE-KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD---KTVRLWDHR 173 (334)
T ss_pred eeeeEEecccchhhhc----cchH-HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC---CceEEEEec
Confidence 3566777887777763 3443 57899999876654434433 22347896555 55444322 233555555
Q ss_pred cCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecc--ccee-EEEeeeCCEEE
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--VGVD-TAASHRGNHFF 344 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~--~g~~-~~v~~~g~~ly 344 (534)
-|+. -..++-. .+ .-++.+++||++|.|.-.+ .|-..+... +.+|..+. -+++ .++++.. .+|
T Consensus 174 Tgt~---v~sL~~~-s~--VtSlEvs~dG~ilTia~gs----sV~Fwdaks---f~~lKs~k~P~nV~SASL~P~k-~~f 239 (334)
T KOG0278|consen 174 TGTE---VQSLEFN-SP--VTSLEVSQDGRILTIAYGS----SVKFWDAKS---FGLLKSYKMPCNVESASLHPKK-EFF 239 (334)
T ss_pred cCcE---EEEEecC-CC--CcceeeccCCCEEEEecCc----eeEEecccc---ccceeeccCccccccccccCCC-ceE
Confidence 4542 1223211 11 1246789999999886443 233444433 22332221 1122 3455554 566
Q ss_pred EEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCC-EEEEEEeeCCeeEEEEEECC
Q 009441 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 345 i~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~-~lv~~~~~~g~~~l~~~~l~ 408 (534)
+..+ ..+++++.|..+.....-....... -+--+...++ .+|....++|.-+|+.+...
T Consensus 240 VaGg----ed~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 240 VAGG----EDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EecC----cceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 6443 4589999998764321111122223 3556666654 67888999999888887653
No 107
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=93.98 E-value=1.6 Score=45.19 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=80.5
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCCc-cceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~~-~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
.++..++.||--|+|.-++..+| .+.+||+.+..+.-. ....+ ..+++|+|.+ .|+.+. +...+|+.+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV----G~Dkki~~y 236 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV----GYDKKINIY 236 (673)
T ss_pred CeEEEeecccccceeeEeeccCC----eEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe----cccceEEEe
Confidence 34567789999999998888777 689999987654321 11111 3468999988 554442 223589999
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
++++....+.++|+.+ +-.++++++|-+|++... ..+|+..|+....
T Consensus 237 D~~s~~s~~~l~y~~P----lstvaf~~~G~~L~aG~s---~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 237 DIRSQASTDRLTYSHP----LSTVAFSECGTYLCAGNS---KGELIAYDMRSTK 283 (673)
T ss_pred ecccccccceeeecCC----cceeeecCCceEEEeecC---CceEEEEecccCC
Confidence 9998877888898643 234788999999877533 3478888887643
No 108
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.94 E-value=2.2 Score=41.45 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=46.1
Q ss_pred CceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEE-CCCC--Ceecc--cc-CC---ccceeEEc
Q 009441 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVID-IETG--TPVGK--PL-VG---VTASVEWA 244 (534)
Q Consensus 174 ~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~d-l~tg--~~~~~--~i-~~---~~~~~~Ws 244 (534)
..++-+|...+. + .|..+++||||.++|+.+..+|..+..+-.+- -..| ..+.. .+ .. ....+.|.
T Consensus 100 ~~~~~v~~~~~~---~--~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLR---G--RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ceeEEecccccC---C--ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 346667754333 2 78999999999999999987665443333322 2233 11111 11 11 22359999
Q ss_pred cCCeEEEEEE
Q 009441 245 GNEALVYITM 254 (534)
Q Consensus 245 ~Dg~l~Y~~~ 254 (534)
+++.|+....
T Consensus 175 ~~~~L~V~~~ 184 (253)
T PF10647_consen 175 DDSTLVVLGR 184 (253)
T ss_pred CCCEEEEEeC
Confidence 9998877764
No 109
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.85 E-value=0.72 Score=50.03 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=64.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
.++.+.+.|+..|+| +|+-..++++||+.+|..+.. ..| ....++++|+|..+-+. ++ ...|..|++
T Consensus 537 DV~cv~FHPNs~Y~a-----TGSsD~tVRlWDv~~G~~VRi-F~GH~~~V~al~~Sp~Gr~LaSg-~e---d~~I~iWDl 606 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVA-----TGSSDRTVRLWDVSTGNSVRI-FTGHKGPVTALAFSPCGRYLASG-DE---DGLIKIWDL 606 (707)
T ss_pred ccceEEECCcccccc-----cCCCCceEEEEEcCCCcEEEE-ecCCCCceEEEEEcCCCceEeec-cc---CCcEEEEEc
Confidence 467789999999998 456668999999999987652 222 23459999999433332 22 246888899
Q ss_pred CCCCCCceEeeeecCCceEEEEEEcCCCcEEEEE
Q 009441 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIA 302 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~ 302 (534)
+++.- -..+.+..+ ...++.+|.||..|+..
T Consensus 607 ~~~~~-v~~l~~Ht~--ti~SlsFS~dg~vLasg 637 (707)
T KOG0263|consen 607 ANGSL-VKQLKGHTG--TIYSLSFSRDGNVLASG 637 (707)
T ss_pred CCCcc-hhhhhcccC--ceeEEEEecCCCEEEec
Confidence 87621 111223322 33356789999987653
No 110
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=93.79 E-value=0.73 Score=48.94 Aligned_cols=100 Identities=9% Similarity=0.156 Sum_probs=60.8
Q ss_pred EEEEEEECCCC-CEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 192 SVGCFQVSPDN-KLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 192 ~l~~~~~SPDG-~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
.|..++|.|=- ..||.+. -..+|.+||+.+++.... .-.++++ ++|+||| .+.-+..|. +|+.|
T Consensus 679 KI~slRfHPLAadvLa~as-----yd~Ti~lWDl~~~~~~~~l~gHtdqIf~-~AWSpdGr~~AtVcKDg-----~~rVy 747 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVAS-----YDSTIELWDLANAKLYSRLVGHTDQIFG-IAWSPDGRRIATVCKDG-----TLRVY 747 (1012)
T ss_pred eEEEEEecchhhhHhhhhh-----ccceeeeeehhhhhhhheeccCcCceeE-EEECCCCcceeeeecCc-----eEEEe
Confidence 46667888833 3333332 247899999999875431 2234565 9999999 666665543 45555
Q ss_pred ecCCCCCCceEeeeecCCc--eEEEEEEcCCCcEEEEEecC
Q 009441 267 KLEADQSNDICLYHEKDDI--YSLGLQASESKKFLFIASES 305 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~--~~v~~~~S~Dg~~l~i~~~~ 305 (534)
+-.+. .+-|+|.+.+- --..+-|.-||+++++..-.
T Consensus 748 ~Prs~---e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 748 EPRSR---EQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred CCCCC---CCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 54332 34677765432 12235567799998876543
No 111
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.64 E-value=7.3 Score=37.68 Aligned_cols=203 Identities=15% Similarity=0.232 Sum_probs=97.9
Q ss_pred CceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCc--cceeEEccCCeEE
Q 009441 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEWAGNEALV 250 (534)
Q Consensus 174 ~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~--~~~~~Ws~Dg~l~ 250 (534)
+-++.++.-.++.-.. .++++.+.||.+.|+...|..+ .|+.++++ |+.+.. .+.+. ..++++..++.+
T Consensus 7 ~y~~~i~~~~l~g~~~--e~SGLTy~pd~~tLfaV~d~~~----~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~- 78 (248)
T PF06977_consen 7 DYRVVIEAKPLPGILD--ELSGLTYNPDTGTLFAVQDEPG----EIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRY- 78 (248)
T ss_dssp T-EEEEEEEE-TT--S---EEEEEEETTTTEEEEEETTTT----EEEEEETT---EEEEEE-SS-SSEEEEEE-STTEE-
T ss_pred CcEEEEeeeECCCccC--CccccEEcCCCCeEEEEECCCC----EEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEE-
Confidence 3456666434432111 3889999999999888888654 57888875 777653 34443 456889877644
Q ss_pred EEEECCCCCCceEEEeecCCCCC----CceEeee-----ecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeC--CCC
Q 009441 251 YITMDEILRPDKAWLHKLEADQS----NDICLYH-----EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV--SKP 319 (534)
Q Consensus 251 Y~~~d~~~r~~~v~~~~lgt~~~----~d~lv~~-----e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~--~~~ 319 (534)
.++. .|..+++.+.+..... .+..-+. ..+.+ +-++++.+.++.+++.-. +.-..+|-++. ...
T Consensus 79 vl~~---Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G-~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 79 VLSE---ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKG-FEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGF 153 (248)
T ss_dssp EEEE---TTTTEEEEEEE----TT--EEEEEEEE---S---SS---EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS
T ss_pred EEEE---cCCCcEEEEEEeccccccchhhceEEecccccCCCcc-eEEEEEcCCCCEEEEEeC-CCChhhEEEccccCcc
Confidence 4442 2456788888743211 1101111 11222 346888887777665432 22345777765 221
Q ss_pred CceeEe--eecc-cc------eeEEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceE-EecC-----CCCceeeeEE
Q 009441 320 EELRVL--TPRV-VG------VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPH-----RESVKLQDIQ 384 (534)
Q Consensus 320 ~~~~~l--~~~~-~g------~~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~-li~~-----~~~~~l~~~~ 384 (534)
. .... .+.. .+ ....+.+..++||+++... .+|+.++.+..-.... +... ..-.+-|++.
T Consensus 154 ~-~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 154 D-LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp ---EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT----TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred c-eeeccccccccccceeccccceEEcCCCCeEEEEECCC----CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEE
Confidence 1 1110 0000 00 0122556788999999752 4677777542111112 2221 1123478888
Q ss_pred EeCC-EEEEEE
Q 009441 385 LFID-HLAVYE 394 (534)
Q Consensus 385 ~~~~-~lv~~~ 394 (534)
+.++ .||+..
T Consensus 229 ~d~~G~LYIvs 239 (248)
T PF06977_consen 229 FDPDGNLYIVS 239 (248)
T ss_dssp E-TT--EEEEE
T ss_pred ECCCCCEEEEc
Confidence 8764 455544
No 112
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.54 E-value=1.1 Score=48.65 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=74.1
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCc-cceeEEccCCeEEEEEE--CCCC----------
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-TASVEWAGNEALVYITM--DEIL---------- 258 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~-~~~~~Ws~Dg~l~Y~~~--d~~~---------- 258 (534)
|-+.++|||.++|. ..+|..++++|.+.+-..+.. .-... ...+.|+|-| .||.+. |.+.
T Consensus 454 Vyg~sFsPd~rfLl-----ScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLL-----SCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred eeeeeeccccccee-----eccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 55679999999887 367778899999988765432 10001 1335567776 333331 2110
Q ss_pred -C---------------C-----------ceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEE
Q 009441 259 -R---------------P-----------DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFV 311 (534)
Q Consensus 259 -r---------------~-----------~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev 311 (534)
| | ..|..|++-++. -+-+|.+. -+-...+.+||+|+||+-.+. ...|
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH-~~~V~al~~Sp~Gr~LaSg~e---d~~I 601 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--SVRIFTGH-KGPVTALAFSPCGRYLASGDE---DGLI 601 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--EEEEecCC-CCceEEEEEcCCCceEeeccc---CCcE
Confidence 0 0 123344444432 24455431 122335788999999864322 3345
Q ss_pred EEEeCCCCCceeEeeecccceeEE--EeeeCCEEE
Q 009441 312 FYLDVSKPEELRVLTPRVVGVDTA--ASHRGNHFF 344 (534)
Q Consensus 312 ~~~d~~~~~~~~~l~~~~~g~~~~--v~~~g~~ly 344 (534)
-+-|+.++..+..+... .+..++ ++.+|+.|.
T Consensus 602 ~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLa 635 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLA 635 (707)
T ss_pred EEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEE
Confidence 66677665422223333 444554 556665443
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.40 E-value=5.4 Score=40.82 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=68.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
.+.+..+.|||-.++ .|....++.|||+.++..+. ..++ -...+.|+.+|.++-+..|+. .|.+|+|
T Consensus 349 ~~ts~~fHpDgLifg-----tgt~d~~vkiwdlks~~~~a-~Fpght~~vk~i~FsENGY~Lat~add~----~V~lwDL 418 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFG-----TGTPDGVVKIWDLKSQTNVA-KFPGHTGPVKAISFSENGYWLATAADDG----SVKLWDL 418 (506)
T ss_pred eeEEeeEcCCceEEe-----ccCCCceEEEEEcCCccccc-cCCCCCCceeEEEeccCceEEEEEecCC----eEEEEEe
Confidence 355567788886555 36667899999999887554 2332 234589998884444444432 3777777
Q ss_pred CCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEee
Q 009441 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT 326 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~ 326 (534)
.-.. ...-|.-.+..-..++.+...|+||.+. ..+-.||...-.+. .|..+.
T Consensus 419 RKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k-~W~~~~ 470 (506)
T KOG0289|consen 419 RKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIA---GSDLQVYICKKKTK-SWTEIK 470 (506)
T ss_pred hhhc--ccceeeccccccceeEEEcCCCCeEEee---cceeEEEEEecccc-cceeee
Confidence 5331 1111221111112346678899999886 22335666654443 365554
No 114
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.26 E-value=3 Score=40.95 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=78.2
Q ss_pred ceEEeecchhcCC---CC-cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-e
Q 009441 175 EHLILDENVKAEG---RG-FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-A 248 (534)
Q Consensus 175 eevllD~n~~a~~---~~-~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~ 248 (534)
.-|+.|..++.-+ .+ .-.|.++.||+||++|.-+.. ...+.++|+-.|..+.. ....-..+..|.|-. .
T Consensus 46 ~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-----D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n 120 (405)
T KOG1273|consen 46 RVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-----DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRN 120 (405)
T ss_pred cEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-----CceeEEEeccCCCceeEEEccCccceeeeccccCC
Confidence 4566665544321 01 235788999999999886533 35789999999986542 222222346787765 3
Q ss_pred E-EEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEE---EEcCCCcEEEEEecCcceeEEEEEeCCCCC--ce
Q 009441 249 L-VYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL---QASESKKFLFIASESKITRFVFYLDVSKPE--EL 322 (534)
Q Consensus 249 l-~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~---~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~--~~ 322 (534)
. .-+-+++. | +...++.+ ...++-..++.+..... .+.+-|+||+.. +++ ..+.+++.++.+ ..
T Consensus 121 ~~va~~~~~s--p---~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG-tsK--Gkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 121 KCVATIMEES--P---VVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITG-TSK--GKLLVYDAETLECVAS 190 (405)
T ss_pred eEEEEEecCC--c---EEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEe-cCc--ceEEEEecchheeeee
Confidence 3 33333332 2 12233321 11222222222222222 267889997653 332 345666666533 11
Q ss_pred eEeeecccce-eEEEeeeCCEEEEEEc
Q 009441 323 RVLTPRVVGV-DTAASHRGNHFFITRR 348 (534)
Q Consensus 323 ~~l~~~~~g~-~~~v~~~g~~lyi~tn 348 (534)
-.++.. ..+ ...++..|..|.+.|.
T Consensus 191 ~rits~-~~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 191 FRITSV-QAIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred eeechh-eeeeEEEEeccCcEEEEecC
Confidence 112211 111 1225556666666554
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=93.19 E-value=0.94 Score=48.64 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=66.4
Q ss_pred cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCe-EEEEEECCCCCCceEEE
Q 009441 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEA-LVYITMDEILRPDKAWL 265 (534)
Q Consensus 190 ~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~-l~Y~~~d~~~r~~~v~~ 265 (534)
++.|....+||+|++||=+-...--|...|++++..+=.... .|++ ....++|+|||+ |+=.+.| | .+-.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLTVT~l~FSpdg~~LLsvsRD---R--t~sl 598 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLTVTRLAFSPDGRYLLSVSRD---R--TVSL 598 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eecccceEEEEEEECCCCcEEEEeecC---c--eEEe
Confidence 367888999999999999888888888999999976543322 2433 235699999994 4444433 2 3333
Q ss_pred eecCCCCCCceEee--eecCCceEEEEEEcCCCcEEEEEecC
Q 009441 266 HKLEADQSNDICLY--HEKDDIYSLGLQASESKKFLFIASES 305 (534)
Q Consensus 266 ~~lgt~~~~d~lv~--~e~d~~~~v~~~~S~Dg~~l~i~~~~ 305 (534)
|..+.+. .+..=| .........+..|+||++| +++++.
T Consensus 599 ~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSR 638 (764)
T KOG1063|consen 599 YEVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKY-FATASR 638 (764)
T ss_pred eeeeccc-chhhhhccccccceEEEEcccCcccce-eEEecC
Confidence 4443221 111112 1222334445678999998 444443
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=1.7 Score=45.82 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=66.7
Q ss_pred EEEEEEEECC-CCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCc-cceeEEccCC-eEEEEEECCCCCCceEEEee
Q 009441 191 YSVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 191 ~~l~~~~~SP-DG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~-~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~ 267 (534)
.++.++.|+| ....||-+ +|.-..+|+++|+.+|+.+...-.+. ..++.|++.. .|..+.-. ....-.||.+
T Consensus 344 aAVKA~awcP~q~~lLAsG---GGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~-s~n~i~lw~~- 418 (484)
T KOG0305|consen 344 AAVKALAWCPWQSGLLATG---GGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY-SENQITLWKY- 418 (484)
T ss_pred eeeeEeeeCCCccCceEEc---CCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCC-CCCcEEEEec-
Confidence 4688899999 56677765 77778999999999999876433342 4569999998 67666421 1112244443
Q ss_pred cCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecC
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES 305 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~ 305 (534)
-+. .....+.. ...-.+.+++||||.+|+..+.+
T Consensus 419 -ps~--~~~~~l~g-H~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 419 -PSM--KLVAELLG-HTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred -ccc--ceeeeecC-CcceeEEEEECCCCCEEEEeccc
Confidence 332 11111111 11224457899999998876554
No 117
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.95 E-value=1.1 Score=44.70 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=68.0
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCCccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
..+-++++++++.||||=.++. ...++|+|+.+-+.... .-++....+++++||.++=+..+. ..-|..+.+
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t---~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeK---GTVIRVf~v 203 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTT---SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEK---GTVIRVFSV 203 (391)
T ss_pred cceEeeccCCCCceEEecCCCC---CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccC---ceEEEEEEc
Confidence 4466778888889999987765 35689999877655431 112334568899999666665332 222333333
Q ss_pred CCCCCCceEeeeec---CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 269 EADQSNDICLYHEK---DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 269 gt~~~~d~lv~~e~---d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
-++ ..+||=- -+--..++++++|+.+|...+++ ..|++..++.
T Consensus 204 ~~G----~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T---eTVHiFKL~~ 249 (391)
T KOG2110|consen 204 PEG----QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT---ETVHIFKLEK 249 (391)
T ss_pred CCc----cEeeeeeCCceeeEEEEEEECCCCCeEEEecCC---CeEEEEEecc
Confidence 222 2444311 11123367899999988765543 2356665544
No 118
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.83 E-value=3.6 Score=41.11 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=79.3
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCCccceeEEccCC---eEEEEEECC--------CC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE---ALVYITMDE--------IL 258 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg---~l~Y~~~d~--------~~ 258 (534)
.+..++++-||..+|= ++-..+|++|-+++++-..+ ..+....-++|.|.. .+...+-.. ..
T Consensus 237 wvr~v~v~~DGti~As-----~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIAS-----CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred hEEEEEecCCeeEEEe-----cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 3566799999998884 33347899999998832221 233333457787774 222221110 12
Q ss_pred CCceEEEeecCCCCCCceEeeeec-CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEe
Q 009441 259 RPDKAWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAAS 337 (534)
Q Consensus 259 r~~~v~~~~lgt~~~~d~lv~~e~-d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~ 337 (534)
|...+..+++.++ .+||+-. ...|.-+++++|.||||+-.+.++ .+.+-|+.+..-.+. .+.-++....++
T Consensus 312 rDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~cmk~-~~ah~hfvt~lD 383 (406)
T KOG0295|consen 312 RDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNLQCMKT-LEAHEHFVTSLD 383 (406)
T ss_pred ccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEeccceeeec-cCCCcceeEEEe
Confidence 3345666777766 3566522 234555789999999987655443 234445544320111 111122223345
Q ss_pred eeCCEEEEEEcC
Q 009441 338 HRGNHFFITRRS 349 (534)
Q Consensus 338 ~~g~~lyi~tn~ 349 (534)
-+.+..|++|..
T Consensus 384 fh~~~p~VvTGs 395 (406)
T KOG0295|consen 384 FHKTAPYVVTGS 395 (406)
T ss_pred cCCCCceEEecc
Confidence 455666777653
No 119
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.72 E-value=7 Score=41.29 Aligned_cols=164 Identities=11% Similarity=0.092 Sum_probs=92.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCc-cceeEEccCC-eEEEEEEC--CCC-C----Cc
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-TASVEWAGNE-ALVYITMD--EIL-R----PD 261 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~-~~~~~Ws~Dg-~l~Y~~~d--~~~-r----~~ 261 (534)
.|..|+|||-+..|||-+-...+--..+-++.+-+++.+.. .+-++ .-.+-|-..| .|.+-... ... . ..
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 37789999999999999888777677888899988887653 23333 2347798888 66555421 111 0 11
Q ss_pred eEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcE-EEEEecCc-ceeEEEEEeCCCCCceeEeeecccc--eeEEEe
Q 009441 262 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKF-LFIASESK-ITRFVFYLDVSKPEELRVLTPRVVG--VDTAAS 337 (534)
Q Consensus 262 ~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~-l~i~~~~~-~~~ev~~~d~~~~~~~~~l~~~~~g--~~~~v~ 337 (534)
.|++.+ ...- .+.+.+-. .-.+.++|-|.|.. .+|..+.. .+-..|-+...... +.++..-... ...+++
T Consensus 428 eIfrir--eKdI-pve~velk--e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-~~lVk~~dk~~~N~vfws 501 (698)
T KOG2314|consen 428 EIFRIR--EKDI-PVEVVELK--ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-PSLVKELDKKFANTVFWS 501 (698)
T ss_pred EEEEee--ccCC-Cceeeecc--hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-hhhhhhhcccccceEEEc
Confidence 233322 1110 01111111 12455788887755 44444432 33466777653332 4333322111 234578
Q ss_pred eeCCEEEEEEcCCCCCccEEEEEeCC
Q 009441 338 HRGNHFFITRRSDELFNSELLACPVD 363 (534)
Q Consensus 338 ~~g~~lyi~tn~~~~~~~~L~~~~~~ 363 (534)
+.|+.+.+.+- .+.++.|.-+|.+
T Consensus 502 PkG~fvvva~l--~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 502 PKGRFVVVAAL--VSRRGDLEFYDTD 525 (698)
T ss_pred CCCcEEEEEEe--cccccceEEEecc
Confidence 88776655543 3466778777765
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=92.55 E-value=9.8 Score=42.55 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=71.0
Q ss_pred CCceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec--cccCCccceeEEccCC-eE
Q 009441 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPLVGVTASVEWAGNE-AL 249 (534)
Q Consensus 173 ~~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~--~~i~~~~~~~~Ws~Dg-~l 249 (534)
+.++.+|+.=+ ..+....++-+|+++|. |++.+.|.++++..+.... ..+++-.-.+.+.|.+ -+
T Consensus 86 ~~~~~iL~Rft-------lp~r~~~v~g~g~~iaa-----gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 86 GEEDTILARFT-------LPIRDLAVSGSGKMIAA-----GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred CCccceeeeee-------ccceEEEEecCCcEEEe-----ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence 45566665322 34677899999999998 4556889999987764322 1223223458888988 44
Q ss_pred EEEEECCCCCCceEEEeecCCCCCCce--Eeee--e-cCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 250 VYITMDEILRPDKAWLHKLEADQSNDI--CLYH--E-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 250 ~Y~~~d~~~r~~~v~~~~lgt~~~~d~--lv~~--e-~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
.-...| .+|+.+++.+....-. .|+. + .+......++|+|+|..+++-.. .+.|-+++..+
T Consensus 154 Avss~d-----G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 154 AVSSCD-----GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKG 219 (933)
T ss_pred EEEecC-----ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCC
Confidence 444443 2677777764421100 0111 1 11334456899999555544332 23455555544
No 121
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.50 E-value=2 Score=40.48 Aligned_cols=118 Identities=15% Similarity=0.226 Sum_probs=62.2
Q ss_pred EEEEEECCCCCEEEEEEcCCCCe----EEEEEEEECCCCCeeccccC---CccceeEEccCC-eEEEEEECCCCCCceE-
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDE----IYTVYVIDIETGTPVGKPLV---GVTASVEWAGNE-ALVYITMDEILRPDKA- 263 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E----~~~l~v~dl~tg~~~~~~i~---~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v- 263 (534)
+..-.++||||+.+=+...-|++ ...|+.+-+ .++.- .+- ++..+++|+-|. .|||+-. . .+.|
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~--~i~~~v~IsNgl~Wd~d~K~fY~iDs--l--n~~V~ 183 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVE--LIWNCVGISNGLAWDSDAKKFYYIDS--L--NYEVD 183 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEecc-CCCce--eeehhccCCccccccccCcEEEEEcc--C--ceEEe
Confidence 34447999999987777766664 224555433 33321 121 245669998777 7777732 1 2445
Q ss_pred -EEeecCCCC-CCceEeee-ecCCce---EE-EEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 264 -WLHKLEADQ-SNDICLYH-EKDDIY---SL-GLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 264 -~~~~lgt~~-~~d~lv~~-e~d~~~---~v-~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
|-+++.|++ ++...+|. ++...+ .. +..+..+|. |++.. .+...|+.+|..+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~--~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVAT--FNGGTVQKVDPTTGK 244 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEE--ecCcEEEEECCCCCc
Confidence 666665543 34455663 111111 00 112223343 23322 334578899988876
No 122
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=92.45 E-value=0.14 Score=53.25 Aligned_cols=56 Identities=23% Similarity=0.409 Sum_probs=40.3
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccc---eeEEccCCeEEEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTA---SVEWAGNEALVYIT 253 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~---~~~Ws~Dg~l~Y~~ 253 (534)
.|..+.+||||++||.... +| .|+|+|-.+.+.+. .....++ -+.|+|||.+..+.
T Consensus 292 ~in~f~FS~DG~~LA~VSq-DG----fLRvF~fdt~eLlg-~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-DG----FLRIFDFDTQELLG-VMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEec-Cc----eEEEeeccHHHHHH-HHHhhccceEEEEEcCCccEEEec
Confidence 7889999999999998644 34 79999998877654 2222222 37899999555554
No 123
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=92.30 E-value=7.8 Score=40.90 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=78.8
Q ss_pred EEEECCCCCEEEEEEcC----CCC---eEEEEEEEECCCCCeeccccC--CccceeEEccCC-eEEEEEECCCCCCceEE
Q 009441 195 CFQVSPDNKLVAYAEDT----KGD---EIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAW 264 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~----~G~---E~~~l~v~dl~tg~~~~~~i~--~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~ 264 (534)
.+.|.+-|.-|...... .|. ...+||.++++ |+.....+. +=...+.|+++| .|...- .--|.++-
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~Vvy---GfMPAkvt 297 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVY---GFMPAKVT 297 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEE---ecccceEE
Confidence 35677777766655433 221 24689999998 544332333 323459999999 443332 11245666
Q ss_pred EeecCCCCCCceEeeeec-CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeec-cccee-EEEeeeCC
Q 009441 265 LHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVD-TAASHRGN 341 (534)
Q Consensus 265 ~~~lgt~~~~d~lv~~e~-d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~-~~g~~-~~v~~~g~ 341 (534)
.|++... +||.-+ .|.- .+.++|-|++|++..-..-..++=+.|..+. +++..- ..+.. ..|+++|.
T Consensus 298 ifnlr~~-----~v~df~egpRN--~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~~tt~~eW~PdGe 367 (566)
T KOG2315|consen 298 IFNLRGK-----PVFDFPEGPRN--TAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAANTTVFEWSPDGE 367 (566)
T ss_pred EEcCCCC-----EeEeCCCCCcc--ceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccCCceEEEEcCCCc
Confidence 6666432 343211 1111 2457899999998763333333333344442 222221 12223 34889999
Q ss_pred EEEEEEcCCCCCccEE
Q 009441 342 HFFITRRSDELFNSEL 357 (534)
Q Consensus 342 ~lyi~tn~~~~~~~~L 357 (534)
+|+..|. +|+.|+
T Consensus 368 ~flTATT---aPRlrv 380 (566)
T KOG2315|consen 368 YFLTATT---APRLRV 380 (566)
T ss_pred EEEEEec---cccEEe
Confidence 8887775 455544
No 124
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=6.3 Score=40.02 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=90.9
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC--CccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~--~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
..++++.||..||- |.+...++|++..+...+-+.+. +-...+.|+||| .+.|++.| ..+||-.+-|.
T Consensus 148 k~vaf~~~gs~lat-----gg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d----~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT-----GGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD----SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeee-----ccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC----ceEEEEeccCc
Confidence 56789999999996 55567999999766654433222 112348899999 88888754 23566554442
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCC--cEEEEEecCccee--EEEEEeCCCC-C--ceeEeeecccceeE-EEeeeCCE
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESK--KFLFIASESKITR--FVFYLDVSKP-E--ELRVLTPRVVGVDT-AASHRGNH 342 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg--~~l~i~~~~~~~~--ev~~~d~~~~-~--~~~~l~~~~~g~~~-~v~~~g~~ 342 (534)
.-. .+-=.++|..| -...++.|+ ..+.+.++..... .++.+-+-.. . .++....+.+++.. .|+.+|..
T Consensus 219 ~~a--~~t~~~k~~~~-~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 219 ALA--RKTPFSKDEMF-SSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred hhh--hcCCcccchhh-hhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 110 00001112222 112233333 3444433322211 1222222121 1 23444555555443 37777777
Q ss_pred EEEEEcCCCCCccEEEEEeCCCCCCceE-EecCCCCceeeeEEEeCC
Q 009441 343 FFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFID 388 (534)
Q Consensus 343 lyi~tn~~~~~~~~L~~~~~~~~~~~~~-li~~~~~~~l~~~~~~~~ 388 (534)
+.+-|+. +.+..++...- ... ++++...-.+.++.+.++
T Consensus 296 ~AlGT~d-----GsVai~~~~~l--q~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 296 LALGTMD-----GSVAIYDAKSL--QRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred EEEeccC-----CcEEEEEecee--eeeEeehhhheeeeeeEEEcCC
Confidence 7777763 23555544321 122 666655556777777765
No 125
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.24 E-value=14 Score=37.08 Aligned_cols=226 Identities=15% Similarity=0.111 Sum_probs=121.7
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCc
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSND 275 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d 275 (534)
..|.|+.+.|.| +|..|. .|+-+|.++|+......++.+++.....+++++.+.. +-+++.+..++ .-
T Consensus 30 P~w~~~~~~L~w-~DI~~~---~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~------~g~~~~~~~~~--~~ 97 (307)
T COG3386 30 PVWDPDRGALLW-VDILGG---RIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE------HGVRLLDPDTG--GK 97 (307)
T ss_pred ccCcCCCCEEEE-EeCCCC---eEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc------cccEEEeccCC--ce
Confidence 578899988855 576665 5888898888665444454444455555554444432 12333333222 11
Q ss_pred -eEeee-ecC-C-ceEEEEEEcCCCcEEEEEec-----C---cceeEEEEEeCCCCCceeEeee---cccceeEEEeeeC
Q 009441 276 -ICLYH-EKD-D-IYSLGLQASESKKFLFIASE-----S---KITRFVFYLDVSKPEELRVLTP---RVVGVDTAASHRG 340 (534)
Q Consensus 276 -~lv~~-e~d-~-~~~v~~~~S~Dg~~l~i~~~-----~---~~~~ev~~~d~~~~~~~~~l~~---~~~g~~~~v~~~g 340 (534)
+++.+ +.+ + ...=+..+.+||++-+-... . .....||.++..+.. .+++.. ..+| ..+++++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-~~l~~~~~~~~NG--la~SpDg 174 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-VRLLDDDLTIPNG--LAFSPDG 174 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-EEeecCcEEecCc--eEECCCC
Confidence 22322 111 1 11114567889988665544 1 123478999864432 222222 1122 2378999
Q ss_pred CEEEEEEcCCCCCccEEEEEeCCC--C---CCceE-EecCCCCceeeeEEEeCC-EEEEEEeeCCeeEEEEEECCCCCCc
Q 009441 341 NHFFITRRSDELFNSELLACPVDN--T---SETTV-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEP 413 (534)
Q Consensus 341 ~~lyi~tn~~~~~~~~L~~~~~~~--~---~~~~~-li~~~~~~~l~~~~~~~~-~lv~~~~~~g~~~l~~~~l~~~g~~ 413 (534)
..||+.=. ...+|++++++. . ..... .....+. ...++.+..+ .|++....+| ..|.+++.+ |+.
T Consensus 175 ~tly~aDT----~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G-~PDG~~vDadG~lw~~a~~~g-~~v~~~~pd--G~l 246 (307)
T COG3386 175 KTLYVADT----PANRIHRYDLDPATGPIGGRRGFVDFDEEPG-LPDGMAVDADGNLWVAAVWGG-GRVVRFNPD--GKL 246 (307)
T ss_pred CEEEEEeC----CCCeEEEEecCcccCccCCcceEEEccCCCC-CCCceEEeCCCCEEEecccCC-ceEEEECCC--CcE
Confidence 98887533 457899988762 1 11112 3333223 3667777654 5554444333 568888877 775
Q ss_pred ccccCCCceeeecCceeeEeCCCCcc---CccEEEEEeccCCCC
Q 009441 414 LKSLQGGKSVEFIDPVYSIDPSESVF---SSRILRFHYSSLRTP 454 (534)
Q Consensus 414 ~~~~~~~~~i~lp~~~~~i~~~~~~~---~~~~l~~~~sS~~~P 454 (534)
+ ..+.+|... . .+..| +.++|+++-.....+
T Consensus 247 ~------~~i~lP~~~--~--t~~~FgG~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 247 L------GEIKLPVKR--P--TNPAFGGPDLNTLYITSARSGMS 280 (307)
T ss_pred E------EEEECCCCC--C--ccceEeCCCcCEEEEEecCCCCC
Confidence 3 467777421 1 12223 347788777666555
No 126
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.22 E-value=10 Score=37.93 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=72.6
Q ss_pred EEEEEEEECCCCCEEEEEEc-----CCC-CeEEEEEEEECCCCCeeccccCC--ccceeEEccCC-eEEEEEECCCCCCc
Q 009441 191 YSVGCFQVSPDNKLVAYAED-----TKG-DEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPD 261 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d-----~~G-~E~~~l~v~dl~tg~~~~~~i~~--~~~~~~Ws~Dg-~l~Y~~~d~~~r~~ 261 (534)
.......+.|||++.+=... ..+ .+...||.+|.. |......... +..+++||||+ .+|++-. ...
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT----~~~ 185 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADT----PAN 185 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeC----CCC
Confidence 45566788899886664444 211 223467777764 4433321221 24569999999 5555422 234
Q ss_pred eEEEeecCC--CC-CC-ceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeE-eeec-ccceeEE
Q 009441 262 KAWLHKLEA--DQ-SN-DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV-LTPR-VVGVDTA 335 (534)
Q Consensus 262 ~v~~~~lgt--~~-~~-d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~-l~~~-~~g~~~~ 335 (534)
+++++.+.. .. .. ...++....++.-=++.+..||.+-+ +.....+.|.+.+.++ ..... ..|. ..-....
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~--~a~~~g~~v~~~~pdG-~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV--AAVWGGGRVVRFNPDG-KLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE--ecccCCceEEEECCCC-cEEEEEECCCCCCccceE
Confidence 677776541 11 11 11222111111111234556666543 2222224555665553 21111 1221 1111233
Q ss_pred EeeeCCEEEEEEcCC
Q 009441 336 ASHRGNHFFITRRSD 350 (534)
Q Consensus 336 v~~~g~~lyi~tn~~ 350 (534)
..++.+.|||.++..
T Consensus 263 gG~~~~~L~iTs~~~ 277 (307)
T COG3386 263 GGPDLNTLYITSARS 277 (307)
T ss_pred eCCCcCEEEEEecCC
Confidence 445678999988863
No 127
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=16 Score=37.82 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=108.3
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC-ccceeEEccCCeEEEEEECCCCCCceEEEeecCCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~-~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~ 272 (534)
....++++|+.+...--. .-.+.++|+++.+.+.-...+ .-.++++++++...|+..... ....++..+-.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~----~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD----SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCC----CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc-CCceEEEEeCCCCe
Confidence 456788888866544322 246888997776655421112 335689999995556653221 23466666655442
Q ss_pred CCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeE-----eeecccc-eeEEEeeeCCEEEEE
Q 009441 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV-----LTPRVVG-VDTAASHRGNHFFIT 346 (534)
Q Consensus 273 ~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~-----l~~~~~g-~~~~v~~~g~~lyi~ 346 (534)
. ...++-...| .+++++|+|+.+++.. ..++.+.+++..... ... ......+ ....++++|..+|+.
T Consensus 152 ~-~~~~~vG~~P---~~~a~~p~g~~vyv~~--~~~~~v~vi~~~~~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 152 V-TATIPVGNTP---TGVAVDPDGNKVYVTN--SDDNTVSVIDTSGNS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred E-EEEEecCCCc---ceEEECCCCCeEEEEe--cCCCeEEEEeCCCcc-eeccccccccccCCCCceEEECCCCCEEEEE
Confidence 1 1223333333 5678999999987755 446788889876543 221 1111111 123367788888876
Q ss_pred EcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECCC
Q 009441 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 347 tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~~ 409 (534)
-.. .....+.+++........+..+.... ....+... +..+++.... ...+.+++..+
T Consensus 225 ~~~--~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~ 284 (381)
T COG3391 225 NDG--SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ--GGTVSVIDGAT 284 (381)
T ss_pred ecc--CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC--CCeEEEEeCCC
Confidence 553 23467888877653322222232221 12333333 4455555443 34677777663
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=92.05 E-value=7.1 Score=38.45 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=101.3
Q ss_pred eecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe-----eccccC-CccceeEEccCC-eEEE
Q 009441 179 LDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-----VGKPLV-GVTASVEWAGNE-ALVY 251 (534)
Q Consensus 179 lD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~-----~~~~i~-~~~~~~~Ws~Dg-~l~Y 251 (534)
||.|.|. +++ -.|..+.+|-|||+||-..+. -.|+||++..=+. +...++ +....+.|+||- .+.+
T Consensus 77 l~~~~LK-gH~-~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 77 LNVSVLK-GHK-KEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV 149 (420)
T ss_pred hhhhhhh-ccC-CceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence 5667775 333 257888999999999976552 3688998864221 111222 123458899997 6655
Q ss_pred EEECCCCCCceEEEeecC-----CCC----CCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCce
Q 009441 252 ITMDEILRPDKAWLHKLE-----ADQ----SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL 322 (534)
Q Consensus 252 ~~~d~~~r~~~v~~~~lg-----t~~----~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~ 322 (534)
.-. +...+|.+.+. ... ..|-+-|++...--.+++.....++||+- ++.. +.|.+-++.+.. +
T Consensus 150 ~~~----~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as~d--t~i~lw~lkGq~-L 221 (420)
T KOG2096|consen 150 SVK----RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-ASLD--TKICLWDLKGQL-L 221 (420)
T ss_pred EEc----cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ecCC--CcEEEEecCCce-e
Confidence 542 34566666542 111 12333344433223445566667777643 2222 345555665421 2
Q ss_pred eEeeec-ccceeEEEeeeCCEEEEEEcCCCCCccEEEEEeCC-CCCCceE--EecCC-CCceeeeEEEeC-CEEEEEEee
Q 009441 323 RVLTPR-VVGVDTAASHRGNHFFITRRSDELFNSELLACPVD-NTSETTV--LIPHR-ESVKLQDIQLFI-DHLAVYERE 396 (534)
Q Consensus 323 ~~l~~~-~~g~~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~-~~~~~~~--li~~~-~~~~l~~~~~~~-~~lv~~~~~ 396 (534)
..+-.. ..+....++++| +|++.+.- .|.-+++..=.. .+...+. ++.-. ...-+..+...+ ..-.++..+
T Consensus 222 ~~idtnq~~n~~aavSP~G-RFia~~gF--TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDG-RFIAVSGF--TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeeccccccccceeeCCCC-cEEEEecC--CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 222111 112223467754 44444432 355555543221 1111111 11110 011123333333 245667778
Q ss_pred CCeeEEEE
Q 009441 397 GGLQKITT 404 (534)
Q Consensus 397 ~g~~~l~~ 404 (534)
+|.-+|+=
T Consensus 299 DG~wriwd 306 (420)
T KOG2096|consen 299 DGKWRIWD 306 (420)
T ss_pred CCcEEEee
Confidence 88766653
No 129
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=91.81 E-value=2.2 Score=41.43 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=64.2
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-----ccCCccceeEEccCCeEEEEEECCCCCCceEEEe
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-----PLVGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-----~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~ 266 (534)
.|..+++-|+|.-+| .|+|..+++++|+...+.+.. .+.++ .+++||..|+++|...++. .+..|
T Consensus 231 DINsv~ffP~G~afa-----tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi-tSv~FS~SGRlLfagy~d~----~c~vW 300 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFA-----TGSDDATCRLYDLRADQELAVYSHDSIICGI-TSVAFSKSGRLLFAGYDDF----TCNVW 300 (343)
T ss_pred ccceEEEccCCCeee-----ecCCCceeEEEeecCCcEEeeeccCcccCCc-eeEEEcccccEEEeeecCC----ceeEe
Confidence 578889999998766 477888999999998766542 22334 4599999999999876542 23333
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcc
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI 307 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~ 307 (534)
+.=.+ +.+.+....+.. .-.+.+||||-- +.+.+++
T Consensus 301 Dtlk~--e~vg~L~GHeNR-vScl~~s~DG~a--v~TgSWD 336 (343)
T KOG0286|consen 301 DTLKG--ERVGVLAGHENR-VSCLGVSPDGMA--VATGSWD 336 (343)
T ss_pred ecccc--ceEEEeeccCCe-eEEEEECCCCcE--EEecchh
Confidence 32111 233333332322 224789999964 4455544
No 130
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.75 E-value=9.4 Score=39.34 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=39.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCCccceeEEccCC-eEEEEEEC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMD 255 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg-~l~Y~~~d 255 (534)
.+-.+.+|+||+|||.+ |- ...+.|||..|++.+.. ...+...+++|-..- .+|-.+.|
T Consensus 204 eil~~avS~Dgkylatg----g~-d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D 265 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG----GR-DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD 265 (479)
T ss_pred eeEEEEEcCCCcEEEec----CC-CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC
Confidence 56678999999999984 32 35788999999988763 122334457774333 55544444
No 131
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.62 E-value=0.46 Score=31.21 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCcEEEEEecCc--ceeEEEE
Q 009441 286 YSLGLQASESKKFLFIASESK--ITRFVFY 313 (534)
Q Consensus 286 ~~v~~~~S~Dg~~l~i~~~~~--~~~ev~~ 313 (534)
....+.+||||++|++.++.. ...+||+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 344578999999999998766 6667774
No 132
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=91.57 E-value=7.2 Score=40.81 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=94.2
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-------CCc-cceeEEccCCeEEEEEECCCCCCce
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-------VGV-TASVEWAGNEALVYITMDEILRPDK 262 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-------~~~-~~~~~Ws~Dg~l~Y~~~d~~~r~~~ 262 (534)
..|..-.|.|+.+-...+.+.+| +++|||+..-+.....| ..+ ....+|++||.++-....+ ..-+
T Consensus 269 a~lt~g~whP~~k~~FlT~s~Dg----tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D--GSIQ 342 (641)
T KOG0772|consen 269 AELTCGCWHPDNKEEFLTCSYDG----TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD--GSIQ 342 (641)
T ss_pred eeeeccccccCcccceEEecCCC----cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC--Ccee
Confidence 45777789999998888877766 69999987543221111 112 3458899999443333222 1234
Q ss_pred EEEeecCCCCCCceEeee-ecCCce-EEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCc----eeEeeecccceeEEE
Q 009441 263 AWLHKLEADQSNDICLYH-EKDDIY-SLGLQASESKKFLFIASESKITRFVFYLDVSKPEE----LRVLTPRVVGVDTAA 336 (534)
Q Consensus 263 v~~~~lgt~~~~d~lv~~-e~d~~~-~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~----~~~l~~~~~g~~~~v 336 (534)
+|- .|.--......+. ..+++- .-.+.+|.||++|+-... ...+-+-|+...++ +.-|.....+...-+
T Consensus 343 ~W~--~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 343 IWD--KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred eee--cCCcccccceEeeeccCCCCceeEEEeccccchhhhccC---CCceeeeeccccccchhhhcCCCccCCCCcccc
Confidence 443 3322122222222 122322 235789999999864332 22344445555431 111111222223346
Q ss_pred eeeCCEEEEEEcC--CCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEE
Q 009441 337 SHRGNHFFITRRS--DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKI 402 (534)
Q Consensus 337 ~~~g~~lyi~tn~--~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l 402 (534)
+++. .|++.... .+...+.|+..+....+.. .-|.-. ..++..+.|.+ ++|++.... |..++
T Consensus 418 SPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v-~ki~i~-~aSvv~~~WhpkLNQi~~gsgd-G~~~v 483 (641)
T KOG0772|consen 418 SPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTV-YKIDIS-TASVVRCLWHPKLNQIFAGSGD-GTAHV 483 (641)
T ss_pred CCCc-eEEEecccccCCCCCceEEEEeccceeeE-EEecCC-CceEEEEeecchhhheeeecCC-CceEE
Confidence 6653 34332221 1122245666654322110 111111 33566666665 455555443 44443
No 133
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.41 E-value=11 Score=35.48 Aligned_cols=184 Identities=13% Similarity=0.128 Sum_probs=90.1
Q ss_pred CCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCceE
Q 009441 199 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDIC 277 (534)
Q Consensus 199 SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~l 277 (534)
.+++++|..+ +. ...|+.+|.++|+.+-. .+++......-..++.+|....+ .+++..+..++. +
T Consensus 33 ~~~~~~v~~~-~~----~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~-----~~l~~~d~~tG~----~ 98 (238)
T PF13360_consen 33 VPDGGRVYVA-SG----DGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSD-----GSLYALDAKTGK----V 98 (238)
T ss_dssp EEETTEEEEE-ET----TSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETT-----SEEEEEETTTSC----E
T ss_pred EEeCCEEEEE-cC----CCEEEEEECCCCCEEEEeeccccccceeeecccccccccce-----eeeEecccCCcc----e
Confidence 3455555554 22 24789999999986532 23332111122234466555421 267777766552 3
Q ss_pred eee-ec----CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-ceeEeeecccc-e--------eEEEeeeCCE
Q 009441 278 LYH-EK----DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG-V--------DTAASHRGNH 342 (534)
Q Consensus 278 v~~-e~----d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~~~l~~~~~g-~--------~~~v~~~g~~ 342 (534)
+++ .. ..........+-++..+++... ...++.+|+++++ .|..-.....+ . ...+-..++.
T Consensus 99 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (238)
T PF13360_consen 99 LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGR 175 (238)
T ss_dssp EEEEEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTE
T ss_pred eeeeccccccccccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCE
Confidence 333 11 1111111122223555555443 4467888877765 22221221111 0 1122223567
Q ss_pred EEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeee-EEEeCCEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQD-IQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 343 lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~-~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
+|+.+.. + +++.+++.+... .|-.+.. .+.. +...++.|++.. .++ .|+.+++.+ |+
T Consensus 176 v~~~~~~-g----~~~~~d~~tg~~-~w~~~~~---~~~~~~~~~~~~l~~~~-~~~--~l~~~d~~t-G~ 233 (238)
T PF13360_consen 176 VYVSSGD-G----RVVAVDLATGEK-LWSKPIS---GIYSLPSVDGGTLYVTS-SDG--RLYALDLKT-GK 233 (238)
T ss_dssp EEEECCT-S----SEEEEETTTTEE-EEEECSS----ECECEECCCTEEEEEE-TTT--EEEEEETTT-TE
T ss_pred EEEEcCC-C----eEEEEECCCCCE-EEEecCC---CccCCceeeCCEEEEEe-CCC--EEEEEECCC-CC
Confidence 7665543 2 377778876542 3732221 1333 555667787777 454 688899886 65
No 134
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.21 E-value=27 Score=38.48 Aligned_cols=183 Identities=12% Similarity=0.110 Sum_probs=98.4
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
.|..+.|+--|.+||++... -.+|-||+..+...+-. ....+ ..++.+|||++.-+..++ .+|..|+.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i-~~l~YSpDgq~iaTG~eD----gKVKvWn~ 379 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRI-TSLAYSPDGQLIATGAED----GKVKVWNT 379 (893)
T ss_pred eeeEEEecccCCEEEEcCCc----cceEEEEEeeccceeeeccccccce-eeEEECCCCcEEEeccCC----CcEEEEec
Confidence 45566777789999997554 45899999877654321 22223 458999999777776443 35666665
Q ss_pred CCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee---EEEeeeCCEEEE
Q 009441 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD---TAASHRGNHFFI 345 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~---~~v~~~g~~lyi 345 (534)
.++- =...|.|..... -.+.++.+|+.++-.+-++ .|..-|+..-..++.++... -.+ ..+++.|+ +.+
T Consensus 380 ~Sgf--C~vTFteHts~V-t~v~f~~~g~~llssSLDG---tVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGe-lV~ 451 (893)
T KOG0291|consen 380 QSGF--CFVTFTEHTSGV-TAVQFTARGNVLLSSSLDG---TVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGE-LVC 451 (893)
T ss_pred cCce--EEEEeccCCCce-EEEEEEecCCEEEEeecCC---eEEeeeecccceeeeecCCC-ceeeeEEEEcCCCC-EEE
Confidence 4431 234566654332 2467888898876443332 23334443321133332211 112 22444454 333
Q ss_pred EEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeee--EEEeCCEEEEEEee
Q 009441 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQD--IQLFIDHLAVYERE 396 (534)
Q Consensus 346 ~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~--~~~~~~~lv~~~~~ 396 (534)
... ...|.++..++..+..-. ++..+++. +.+ |.+.++.|+-...+
T Consensus 452 AG~---~d~F~IfvWS~qTGqllD-iLsGHEgP-Vs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 452 AGA---QDSFEIFVWSVQTGQLLD-ILSGHEGP-VSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eec---cceEEEEEEEeecCeeee-hhcCCCCc-ceeeEEccccCeEEecccc
Confidence 332 356888888876542111 44444443 554 44445544443333
No 135
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=90.70 E-value=22 Score=36.56 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=95.0
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC---Cc-cceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GV-TASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~---~~-~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
+......|.|.||..+.+. .++-+-|+.+|..+..... ++ ....++.|||-||-+...+ ..|..|++
T Consensus 306 V~~ls~h~tgeYllsAs~d-----~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d----~~vkiwdl 376 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASND-----GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD----GVVKIWDL 376 (506)
T ss_pred ceeeeeccCCcEEEEecCC-----ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC----ceEEEEEc
Confidence 4566788999999987653 3566778888876543221 12 4568899998555444321 35666677
Q ss_pred CCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEee-ecccc-eeEEEeeeCCEEEEE
Q 009441 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVVG-VDTAASHRGNHFFIT 346 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~-~~~~g-~~~~v~~~g~~lyi~ 346 (534)
.++. ...=|.. ...-.-.+.++.+|-||+..+... .|.+-|+.....++.+. +...+ ..+.++..|..+.+.
T Consensus 377 ks~~--~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~---~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 377 KSQT--NVAKFPG-HTGPVKAISFSENGYWLATAADDG---SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CCcc--ccccCCC-CCCceeEEEeccCceEEEEEecCC---eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 6542 2223432 111123578899999988766542 37777876543222221 11112 235566666666554
Q ss_pred EcCCCCCccEEEEEeCCCCCCceE-EecCCCCce-eeeEEEeCC
Q 009441 347 RRSDELFNSELLACPVDNTSETTV-LIPHRESVK-LQDIQLFID 388 (534)
Q Consensus 347 tn~~~~~~~~L~~~~~~~~~~~~~-li~~~~~~~-l~~~~~~~~ 388 (534)
. ..-+++.+.-. ..+| .+.+-.+.. +..-..|++
T Consensus 451 g-----~~l~Vy~~~k~---~k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 451 G-----SDLQVYICKKK---TKSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred c-----ceeEEEEEecc---cccceeeehhhhcccccceeeecc
Confidence 2 23677777532 2457 333332322 444444543
No 136
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.65 E-value=8.4 Score=40.27 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=75.0
Q ss_pred EEECCCCCEEEEEEcCC---CCe---EEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEECCCCCCceEEEee
Q 009441 196 FQVSPDNKLVAYAEDTK---GDE---IYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~---G~E---~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~ 267 (534)
+.|-+.|++|.+.+.+. +.- ...|+++++.......+ .+.+....++|.|++ +|....- -.|..+..|+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g---~~pa~~s~~~ 304 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISG---YMPASVSVFD 304 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEec---ccccceeecc
Confidence 57999999999998763 221 25799999874332222 234444569999998 7766651 1123444555
Q ss_pred cCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeee-cccceeE-EEeeeCCEEEE
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVDT-AASHRGNHFFI 345 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~-~~~g~~~-~v~~~g~~lyi 345 (534)
+.+. ++|--+...- -.+.+||.++|+++..-.+....+-+++..+ .++++.. ...+..| .+++++..++.
T Consensus 305 lr~N-----l~~~~Pe~~r-NT~~fsp~~r~il~agF~nl~gni~i~~~~~--rf~~~~~~~~~n~s~~~wspd~qF~~~ 376 (561)
T COG5354 305 LRGN-----LRFYFPEQKR-NTIFFSPHERYILFAGFDNLQGNIEIFDPAG--RFKVAGAFNGLNTSYCDWSPDGQFYDT 376 (561)
T ss_pred cccc-----eEEecCCccc-ccccccCcccEEEEecCCccccceEEeccCC--ceEEEEEeecCCceEeeccCCceEEEe
Confidence 5432 3332110000 0123578888888755444444444555444 2443321 1122233 36676665555
Q ss_pred EEc
Q 009441 346 TRR 348 (534)
Q Consensus 346 ~tn 348 (534)
.+.
T Consensus 377 ~~t 379 (561)
T COG5354 377 DTT 379 (561)
T ss_pred cCC
Confidence 444
No 137
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.32 E-value=4 Score=44.39 Aligned_cols=147 Identities=15% Similarity=0.022 Sum_probs=76.7
Q ss_pred EECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCc
Q 009441 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSND 275 (534)
Q Consensus 197 ~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d 275 (534)
=++|||+.|- +. ......+.++|.++.+.... .+.+....+.+++||..+|++.-.+.....+-....++ .+.
T Consensus 199 PlpnDGk~l~---~~-~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~ 272 (635)
T PRK02888 199 PLPNDGKDLD---DP-KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDW 272 (635)
T ss_pred ccCCCCCEee---cc-cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc--Cce
Confidence 3688999772 22 44457899999998776543 33444456899999955555431121222232222221 112
Q ss_pred eEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC----CCceeEeeecccc-eeEEEeeeCCEEEEEEcCC
Q 009441 276 ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK----PEELRVLTPRVVG-VDTAASHRGNHFFITRRSD 350 (534)
Q Consensus 276 ~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~----~~~~~~l~~~~~g-~~~~v~~~g~~lyi~tn~~ 350 (534)
.++|.-.. .....+||++.++. .+.|-++|..+ ..+....++-... ....++++|.++|+ +|.
T Consensus 273 ~vvfni~~-----iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyV-ank- 340 (635)
T PRK02888 273 VVVFNIAR-----IEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIA-NGK- 340 (635)
T ss_pred EEEEchHH-----HHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEE-eCC-
Confidence 22232100 01457899998872 35788898876 2112222221111 12347788887764 554
Q ss_pred CCCccEEEEEeCC
Q 009441 351 ELFNSELLACPVD 363 (534)
Q Consensus 351 ~~~~~~L~~~~~~ 363 (534)
.++. +-.+|++
T Consensus 341 lS~t--VSVIDv~ 351 (635)
T PRK02888 341 LSPT--VTVIDVR 351 (635)
T ss_pred CCCc--EEEEECh
Confidence 3443 4444543
No 138
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=90.19 E-value=0.87 Score=49.90 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=43.8
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC-eEEEEEEC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMD 255 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg-~l~Y~~~d 255 (534)
.|.++.+|||||+|+-+.-. .+|++||+.||..+.- .++....++.++|.| .+.-+..+
T Consensus 578 ritd~~FS~DgrWlisasmD-----~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASMD-----STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ceeeeEeCCCCcEEEEeecC-----CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 58899999999999987552 4799999999988753 234434458999999 44444333
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=90.05 E-value=26 Score=36.34 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=106.5
Q ss_pred eEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec-cccCCc-cceeEEccCC-eEEEE
Q 009441 176 HLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGV-TASVEWAGNE-ALVYI 252 (534)
Q Consensus 176 evllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~-~~i~~~-~~~~~Ws~Dg-~l~Y~ 252 (534)
..|-|.|.-.. ..-.|.++.+.|.-..|.. ...+| ..+|+-+|=+++..+. ..+... ....+++|+| ...++
T Consensus 201 krlkDaNa~~p--s~~~I~sv~FHp~~plllv-aG~d~--~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~ 275 (514)
T KOG2055|consen 201 KRLKDANAAHP--SHGGITSVQFHPTAPLLLV-AGLDG--TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT 275 (514)
T ss_pred EeecccccCCc--CcCCceEEEecCCCceEEE-ecCCC--cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe
Confidence 35566664332 2235778889887655544 34444 3455555544444333 123332 2347899999 46665
Q ss_pred EECCCCCCceEEEeecCCCCCCc-eEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccc
Q 009441 253 TMDEILRPDKAWLHKLEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 331 (534)
Q Consensus 253 ~~d~~~r~~~v~~~~lgt~~~~d-~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g 331 (534)
+ .|..-+|.|++-+..... ..++.-. ....-.+.+|+|+.+|++..++ .-|+++...+.+ +.--++ .+|
T Consensus 276 s----~rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~---G~I~lLhakT~e-li~s~K-ieG 345 (514)
T KOG2055|consen 276 S----GRRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNN---GHIHLLHAKTKE-LITSFK-IEG 345 (514)
T ss_pred c----ccceEEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccC---ceEEeehhhhhh-hhheee-ecc
Confidence 4 233347778886653211 1122211 2233357889999999886543 356777766654 211111 123
Q ss_pred ee--EEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCC-ceEEecCCCCceeeeEEEe-CCEEEEEEeeCCeeEEE
Q 009441 332 VD--TAASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLF-IDHLAVYEREGGLQKIT 403 (534)
Q Consensus 332 ~~--~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~-~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 403 (534)
.. .-++.++..|++.... +.|+..++..... .+|.... .+.=..+.+. +..++....+.|.-.||
T Consensus 346 ~v~~~~fsSdsk~l~~~~~~-----GeV~v~nl~~~~~~~rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 346 VVSDFTFSSDSKELLASGGT-----GEVYVWNLRQNSCLHRFVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred EEeeEEEecCCcEEEEEcCC-----ceEEEEecCCcceEEEEeecC--ccceeeeeecCCCceEEeccCcceEEEe
Confidence 22 2366677777654432 4788988865432 2232211 1111223322 23455566667765555
No 140
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.78 E-value=0.78 Score=44.18 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcC
Q 009441 479 FDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG 524 (534)
Q Consensus 479 ~d~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYG 524 (534)
+.....++-.+++++.+|-+|-+||+.|+.- .++.|+|+..||
T Consensus 49 ~~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~---~~~~P~vV~fhG 91 (321)
T COG3458 49 FTLPRVEVYDVTFTGYGGARIKGWLVLPRHE---KGKLPAVVQFHG 91 (321)
T ss_pred ccCCceEEEEEEEeccCCceEEEEEEeeccc---CCccceEEEEee
Confidence 4455678889999999999999999999954 389999997554
No 141
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=89.33 E-value=3.5 Score=41.26 Aligned_cols=90 Identities=16% Similarity=0.246 Sum_probs=58.2
Q ss_pred CCceEEeecchhcCCC----CcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc----ccC-CccceeEE
Q 009441 173 PPEHLILDENVKAEGR----GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PLV-GVTASVEW 243 (534)
Q Consensus 173 ~~eevllD~n~~a~~~----~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~----~i~-~~~~~~~W 243 (534)
.++-+|+|...+.... ---.|..+++||||.+||=+.+. | ..|+|+.+.+|+.+-+ ..+ ++ .+++|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeK-G---TVIRVf~v~~G~kl~eFRRG~~~~~I-ySL~F 226 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEK-G---TVIRVFSVPEGQKLYEFRRGTYPVSI-YSLSF 226 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccC-c---eEEEEEEcCCccEeeeeeCCceeeEE-EEEEE
Confidence 3567788876655310 01257889999999999987664 4 6899999999986643 111 23 35999
Q ss_pred ccCCeEEEEEECCCCCCceEEEeecCCC
Q 009441 244 AGNEALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 244 s~Dg~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
++|+.|+-.+.+ ...|..++|+..
T Consensus 227 s~ds~~L~~sS~----TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 227 SPDSQFLAASSN----TETVHIFKLEKV 250 (391)
T ss_pred CCCCCeEEEecC----CCeEEEEEeccc
Confidence 999953333211 225666666543
No 142
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.18 E-value=25 Score=34.94 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=85.7
Q ss_pred EEECCCCCEEEEEE---cCC---CCe-------EEEEEEEECCCCCeecc-ccCC-----ccceeEEccCCeEEEEEECC
Q 009441 196 FQVSPDNKLVAYAE---DTK---GDE-------IYTVYVIDIETGTPVGK-PLVG-----VTASVEWAGNEALVYITMDE 256 (534)
Q Consensus 196 ~~~SPDG~~LA~~~---d~~---G~E-------~~~l~v~dl~tg~~~~~-~i~~-----~~~~~~Ws~Dg~l~Y~~~d~ 256 (534)
+.+.|||+.|+++- .+. |.+ +..|..+|..+|+.+.. .++. ..--++|.+||.+++-....
T Consensus 104 l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 104 LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence 45778887777652 111 222 34578888899988754 2321 11238899999666665422
Q ss_pred ---CCCCceEEEeecCCCCCCceEeeeecC------CceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeee
Q 009441 257 ---ILRPDKAWLHKLEADQSNDICLYHEKD------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP 327 (534)
Q Consensus 257 ---~~r~~~v~~~~lgt~~~~d~lv~~e~d------~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~ 327 (534)
...+--|..|+.|... ..+..++ ..|.-+++.+.||+++++++-.. +.+.+.|..++. +....+
T Consensus 184 g~~~~~~PLva~~~~g~~~----~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG--g~~~~~d~~tg~-~~~~~~ 256 (305)
T PF07433_consen 184 GDPGDAPPLVALHRRGGAL----RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG--GRVAVWDAATGR-LLGSVP 256 (305)
T ss_pred CCCCccCCeEEEEcCCCcc----eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC--CEEEEEECCCCC-Eeeccc
Confidence 2334468888887642 2232211 23555799999999988866443 345555777765 444444
Q ss_pred cccceeEEEeeeCCEEEEEEcCCCCCccEEEEEeC
Q 009441 328 RVVGVDTAASHRGNHFFITRRSDELFNSELLACPV 362 (534)
Q Consensus 328 ~~~g~~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~ 362 (534)
..+. +.+...++. +++|+. . ++++....
T Consensus 257 l~D~--cGva~~~~~-f~~ssG--~--G~~~~~~~ 284 (305)
T PF07433_consen 257 LPDA--CGVAPTDDG-FLVSSG--Q--GQLIRLSP 284 (305)
T ss_pred cCce--eeeeecCCc-eEEeCC--C--ccEEEccC
Confidence 3332 223333344 445542 2 45655543
No 143
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.87 E-value=21 Score=39.07 Aligned_cols=191 Identities=13% Similarity=0.123 Sum_probs=102.1
Q ss_pred cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccC-----CeEEEEEECCCCCCceE
Q 009441 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGN-----EALVYITMDEILRPDKA 263 (534)
Q Consensus 190 ~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~D-----g~l~Y~~~d~~~r~~~v 263 (534)
+-.+.+..+++|+.-+.++ |. .-.+.|+|+.+-+.+.. ++-....++...++ |..+|+.-.. ..+
T Consensus 192 ~S~vtsL~~~~d~~~~ls~----~R-Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~----g~~ 262 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSV----GR-DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS----GVV 262 (775)
T ss_pred hhheeeeeeccCCceEEEe----cc-CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC----ceE
Confidence 4568889999998877764 22 24788999866544321 11111223555544 2466665321 123
Q ss_pred EEeecCCCCCCceEeeee---cCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeE---EEe
Q 009441 264 WLHKLEADQSNDICLYHE---KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT---AAS 337 (534)
Q Consensus 264 ~~~~lgt~~~~d~lv~~e---~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~---~v~ 337 (534)
..++..+. .+++.. +++.+.-......+++.+++++. ..++++|.++..-.+.+... .+..+ ++.
T Consensus 263 ~~~d~es~----~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtae----Qnl~l~d~~~l~i~k~ivG~-ndEI~Dm~~lG 333 (775)
T KOG0319|consen 263 QYWDSESG----KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAE----QNLFLYDEDELTIVKQIVGY-NDEILDMKFLG 333 (775)
T ss_pred EEEecccc----hhhhhhccCCchhhhcceeccccCceEEEEcc----ceEEEEEccccEEehhhcCC-chhheeeeecC
Confidence 33333222 112210 01222222345566777666442 35667766553201112211 11122 356
Q ss_pred eeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCC-EEEEEEeeCCeeEEEEEE
Q 009441 338 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYR 406 (534)
Q Consensus 338 ~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~-~lv~~~~~~g~~~l~~~~ 406 (534)
+..+++++.||. +..|++ ++.+... -+++.+.+. +-+++++.. -|+++..++-...+++++
T Consensus 334 ~e~~~laVATNs---~~lr~y--~~~~~~c--~ii~GH~e~-vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 334 PEESHLAVATNS---PELRLY--TLPTSYC--QIIPGHTEA-VLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred CccceEEEEeCC---CceEEE--ecCCCce--EEEeCchhh-eeeeeecccCcEEEEecCCceEEEEEec
Confidence 667899999985 668887 4433221 177776664 666665544 488888888888888883
No 144
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=88.87 E-value=4.8 Score=42.42 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=41.5
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCCeEEEEEE
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITM 254 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg~l~Y~~~ 254 (534)
..+.+||.|++|+++-- |+=...+-|+|+.+.+.+.. ...+. .-++|+|||.+|+|..
T Consensus 315 N~~~fnp~g~ii~lAGF--GNL~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGF--GNLPGDMEVWDVPNRKLIAKFKAANT-TVFEWSPDGEYFLTAT 373 (566)
T ss_pred cceEECCCCCEEEEeec--CCCCCceEEEeccchhhccccccCCc-eEEEEcCCCcEEEEEe
Confidence 34579999999998744 44556799999998765542 22333 4589999996667764
No 145
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.72 E-value=27 Score=34.72 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=44.8
Q ss_pred CCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCC-Ceecc-ccCCc-cceeEEccCC-eEEEE
Q 009441 188 RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG-TPVGK-PLVGV-TASVEWAGNE-ALVYI 252 (534)
Q Consensus 188 ~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg-~~~~~-~i~~~-~~~~~Ws~Dg-~l~Y~ 252 (534)
.+-..-+.-.+||||++|.-+...-.+-+..|-|+|++.+ +.+.+ .--++ -..+.|.||| .|...
T Consensus 48 ~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 48 PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 3444456678999999998888776666789999999843 33322 12234 3468999999 66544
No 146
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.59 E-value=29 Score=34.85 Aligned_cols=244 Identities=11% Similarity=0.051 Sum_probs=111.3
Q ss_pred ceeEEccCCeEEEEEECC-CCCCceEEEeecCCCCCCceEeee-----ecCCceEEEEEEcCCCcEEEEEecCcceeEEE
Q 009441 239 ASVEWAGNEALVYITMDE-ILRPDKAWLHKLEADQSNDICLYH-----EKDDIYSLGLQASESKKFLFIASESKITRFVF 312 (534)
Q Consensus 239 ~~~~Ws~Dg~l~Y~~~d~-~~r~~~v~~~~lgt~~~~d~lv~~-----e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~ 312 (534)
+.++|.|+++.+|+...+ ....-..|..+-..+ .+-+- ...+.. .+++++||++++...-.. ..|.
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G----~Lt~ln~~~~~g~~p~--yvsvd~~g~~vf~AnY~~--g~v~ 114 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG----RLTFLNRQTLPGSPPC--YVSVDEDGRFVFVANYHS--GSVS 114 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC----eEEEeeccccCCCCCe--EEEECCCCCEEEEEEccC--ceEE
Confidence 458899999666776533 111223444442111 22221 112323 367899999987644332 4455
Q ss_pred EEeCCC-CC--ceeEeeecccc----------eeEE-EeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCc--e-EEecCC
Q 009441 313 YLDVSK-PE--ELRVLTPRVVG----------VDTA-ASHRGNHFFITRRSDELFNSELLACPVDNTSET--T-VLIPHR 375 (534)
Q Consensus 313 ~~d~~~-~~--~~~~l~~~~~g----------~~~~-v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~--~-~li~~~ 375 (534)
+.++.+ +. .+..+.....+ ..+. +.+++..| +.++. +.++..+++.+ .+... . ..+++.
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l-~v~DL-G~Dri~~y~~~--dg~L~~~~~~~v~~G 190 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL-VVPDL-GTDRIFLYDLD--DGKLTPADPAEVKPG 190 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEE-EEeec-CCceEEEEEcc--cCccccccccccCCC
Confidence 555533 32 11111111111 1222 55665544 45555 56655555544 32211 1 133333
Q ss_pred CCceeeeEEEeCC--EEEEEEeeCCeeEEEEEECCCCCCcccccCCCcee-eecCc----eeeEeCCCCccCccEEEEEe
Q 009441 376 ESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV-EFIDP----VYSIDPSESVFSSRILRFHY 448 (534)
Q Consensus 376 ~~~~l~~~~~~~~--~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i-~lp~~----~~~i~~~~~~~~~~~l~~~~ 448 (534)
. --..+.+.++ .+|+...-++ .|.++..+..+..+..++ .+ .+|+. .+. +.+-.+.+++.|+.+=
T Consensus 191 ~--GPRHi~FHpn~k~aY~v~EL~s--tV~v~~y~~~~g~~~~lQ---~i~tlP~dF~g~~~~-aaIhis~dGrFLYasN 262 (346)
T COG2706 191 A--GPRHIVFHPNGKYAYLVNELNS--TVDVLEYNPAVGKFEELQ---TIDTLPEDFTGTNWA-AAIHISPDGRFLYASN 262 (346)
T ss_pred C--CcceEEEcCCCcEEEEEeccCC--EEEEEEEcCCCceEEEee---eeccCccccCCCCce-eEEEECCCCCEEEEec
Confidence 2 2455555543 4555444444 455555553222222221 12 23432 111 1112234566555443
Q ss_pred ccCCCCCeEEEEECCCCcEEEEEEccccCCCCCCCcE----EEEEEEEcCCCceecEEEE
Q 009441 449 SSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYF----TERKWASASDGTQIPICIV 504 (534)
Q Consensus 449 sS~~~P~~~y~~d~~~~~~~~~~~~~~~~~~d~~~~~----~e~v~~~S~DG~~VP~~lv 504 (534)
-... -=.+|..|..+|+++.....+.. +.-+.++. -.-+-+...|+-.|-++-+
T Consensus 263 Rg~d-sI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 263 RGHD-SIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred CCCC-eEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 3333 34568899988988877765442 22222221 2344455556666554433
No 147
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=88.26 E-value=11 Score=38.17 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=51.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCC------Ceecc---c-cCCccceeEEccCCeEEEEEECCCCCCc
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG------TPVGK---P-LVGVTASVEWAGNEALVYITMDEILRPD 261 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg------~~~~~---~-i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~ 261 (534)
-|.++.+|.+|++||- |.+.....+|.++.- +++.. . -.+++. ++|.-.++++|.. .+..
T Consensus 58 CiNAlqFS~N~~~L~S-----GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~-L~F~~~N~~~~SG----~~~~ 127 (609)
T KOG4227|consen 58 CINALQFSHNDRFLAS-----GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFS-LEFDLENRFLYSG----ERWG 127 (609)
T ss_pred ccceeeeccCCeEEee-----cCCcceeeeechHHHHhhcCCCCceeccCccccceEE-EEEccCCeeEecC----CCcc
Confidence 5788899999999984 444577888887632 22211 0 123443 6674444888875 3456
Q ss_pred eEEEeecCCCCCCceEeeeecC
Q 009441 262 KAWLHKLEADQSNDICLYHEKD 283 (534)
Q Consensus 262 ~v~~~~lgt~~~~d~lv~~e~d 283 (534)
+|..|++.+.+ ..-||.+.+
T Consensus 128 ~VI~HDiEt~q--si~V~~~~~ 147 (609)
T KOG4227|consen 128 TVIKHDIETKQ--SIYVANENN 147 (609)
T ss_pred eeEeeecccce--eeeeecccC
Confidence 89999998874 345665544
No 148
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=88.20 E-value=12 Score=38.19 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=104.5
Q ss_pred EEEEEEEECC-CCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC--Cc-cceeEEccCCeEEEEEECCCCCCceEEEe
Q 009441 191 YSVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GV-TASVEWAGNEALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 191 ~~l~~~~~SP-DG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~--~~-~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~ 266 (534)
-+|..+++|| |.+++.++-| .+|.|+|-.-.+.-. .|. +. .-.+.|.|.-++..+.-+++ -|..+
T Consensus 181 eaIRdlafSpnDskF~t~SdD------g~ikiWdf~~~kee~-vL~GHgwdVksvdWHP~kgLiasgskDn----lVKlW 249 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDD------GTIKIWDFRMPKEER-VLRGHGWDVKSVDWHPTKGLIASGSKDN----LVKLW 249 (464)
T ss_pred hhhheeccCCCCceeEEecCC------CeEEEEeccCCchhh-eeccCCCCcceeccCCccceeEEccCCc----eeEee
Confidence 4688889998 5555555422 479999976554321 232 22 23589999877777765443 34444
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEEeeeCCEEEE
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFI 345 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~g~~lyi 345 (534)
+-.++.. ..-... .....+.+.+.+++.||+-.+.+ ..+-++|+...+++.........+. ..+.+....|+.
T Consensus 250 DprSg~c--l~tlh~-HKntVl~~~f~~n~N~Llt~skD---~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 250 DPRSGSC--LATLHG-HKNTVLAVKFNPNGNWLLTGSKD---QSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred cCCCcch--hhhhhh-ccceEEEEEEcCCCCeeEEccCC---ceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence 5444421 111111 12345568899999987643322 2455566653222333322211111 224455555554
Q ss_pred EEcCCCCCccEEEEEeCC--CCCCceEEecCCCCceeeeEEEeC-CEEEEEEeeCCeeEEEEEECC
Q 009441 346 TRRSDELFNSELLACPVD--NTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 346 ~tn~~~~~~~~L~~~~~~--~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~ 408 (534)
.... .+.|+-..+. .|- -.+++..+..|-++.+.+ +||+.....+-..+.+.-+..
T Consensus 324 sgg~----Dgsvvh~~v~~~~p~---~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 324 SGGS----DGSVVHWVVGLEEPL---GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred eccC----CCceEEEeccccccc---cCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 4332 2344443332 211 145665566688888876 789888777766666655544
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=87.68 E-value=6.6 Score=38.64 Aligned_cols=111 Identities=20% Similarity=0.172 Sum_probs=59.8
Q ss_pred EEEECCCCCEEEEEEcCCCCeEEEEEEEEC---CCCCeecc----ccCCc---cceeEEccCC-eEEEEEECCCCCCceE
Q 009441 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDI---ETGTPVGK----PLVGV---TASVEWAGNE-ALVYITMDEILRPDKA 263 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl---~tg~~~~~----~i~~~---~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v 263 (534)
..++||||++||.+--+. .+.||.+ ..|+.... .+.+- ...++|++++ ++.-.+.|... +|
T Consensus 233 ~aavSP~GRFia~~gFTp-----DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w---ri 304 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTP-----DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW---RI 304 (420)
T ss_pred ceeeCCCCcEEEEecCCC-----CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcE---EE
Confidence 468999999999764332 2444442 34543221 23442 2347788998 66666656443 44
Q ss_pred E----EeecCCCCCCceEeee-----ecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 264 W----LHKLEADQSNDICLYH-----EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 264 ~----~~~lgt~~~~d~lv~~-----e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
| ++..|.++ .++-+ +....--+.+..||.|+.+++...+ .+.++..++++
T Consensus 305 wdtdVrY~~~qDp---k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs----~l~~~~se~g~ 363 (420)
T KOG2096|consen 305 WDTDVRYEAGQDP---KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS----DLKVFASEDGK 363 (420)
T ss_pred eeccceEecCCCc---hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC----ceEEEEcccCc
Confidence 4 34445432 12211 1111122467899999998875543 34455555543
No 150
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=87.44 E-value=7.5 Score=37.85 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=61.5
Q ss_pred EEEEEEECC-CCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SP-DG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
.|-++.++| |++..+= |+=....++||+..|.-.+ ..++ -...+.|.|+|.-|-+..|+ .....++
T Consensus 188 DV~slsl~p~~~ntFvS-----g~cD~~aklWD~R~~~c~q-tF~ghesDINsv~ffP~G~afatGSDD----~tcRlyD 257 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVS-----GGCDKSAKLWDVRSGQCVQ-TFEGHESDINSVRFFPSGDAFATGSDD----ATCRLYD 257 (343)
T ss_pred cEEEEecCCCCCCeEEe-----cccccceeeeeccCcceeE-eecccccccceEEEccCCCeeeecCCC----ceeEEEe
Confidence 355677888 7776553 3223578899999886654 3333 13459999999333333332 1344457
Q ss_pred cCCCCCCceEeeeecCCce-EEEEEEcCCCcEEEEEe
Q 009441 268 LEADQSNDICLYHEKDDIY-SLGLQASESKKFLFIAS 303 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~-~v~~~~S~Dg~~l~i~~ 303 (534)
|.+++ ...+|+.....+ ..++.+|..||.|+...
T Consensus 258 lRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 258 LRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred ecCCc--EEeeeccCcccCCceeEEEcccccEEEeee
Confidence 76653 467787433222 33688999999988753
No 151
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.23 E-value=6.4 Score=39.38 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=88.7
Q ss_pred CcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC-ccceeEEccCCeEEEEEECCCCCCceEEEee
Q 009441 189 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 189 ~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~-~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
|+=+|..++++|-...|.-+... .-.|.++|+.++.++...+-. ....++|.| ..|-|+.-++ .+.+|.|+
T Consensus 186 G~Dti~svkfNpvETsILas~~s----DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~E---D~nlY~~D 257 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCAS----DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANE---DHNLYTYD 257 (433)
T ss_pred CCCceeEEecCCCcchheeeecc----CCceEEEecccCCccceeeeeccccceecCc-cccceeeccc---cccceehh
Confidence 34467778888877655544322 235999999999988754433 356699999 5455565433 45788887
Q ss_pred cCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEe--eeccccee-EEEeeeCCEEE
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL--TPRVVGVD-TAASHRGNHFF 344 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l--~~~~~g~~-~~v~~~g~~ly 344 (534)
+.--. ...-||.+. -.-.+++.+||-|+-++- .+.+ -.|.+.+...+. -+-+ ++|-..+. .-++++ .=|
T Consensus 258 mR~l~-~p~~v~~dh-vsAV~dVdfsptG~Efvs--gsyD-ksIRIf~~~~~~-SRdiYhtkRMq~V~~Vk~S~D--sky 329 (433)
T KOG0268|consen 258 MRNLS-RPLNVHKDH-VSAVMDVDFSPTGQEFVS--GSYD-KSIRIFPVNHGH-SRDIYHTKRMQHVFCVKYSMD--SKY 329 (433)
T ss_pred hhhhc-ccchhhccc-ceeEEEeccCCCcchhcc--cccc-ceEEEeecCCCc-chhhhhHhhhheeeEEEEecc--ccE
Confidence 65332 234455432 223457788999988653 3322 234555554443 1111 12211111 123444 345
Q ss_pred EEEcCCCCCccEEEEEeC
Q 009441 345 ITRRSDELFNSELLACPV 362 (534)
Q Consensus 345 i~tn~~~~~~~~L~~~~~ 362 (534)
|++.. +..|-+|++...
T Consensus 330 i~SGS-dd~nvRlWka~A 346 (433)
T KOG0268|consen 330 IISGS-DDGNVRLWKAKA 346 (433)
T ss_pred EEecC-CCcceeeeecch
Confidence 66665 356788988764
No 152
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.07 E-value=54 Score=36.30 Aligned_cols=185 Identities=17% Similarity=0.204 Sum_probs=97.8
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC---CccceeEEccCC-eEEEEEECCCCCCceEEEeec---
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL--- 268 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~---~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~l--- 268 (534)
..+=|.++++..+.+. ..|.|+|++++..+. .++ ++-..++-+||+ ++.-.+.|.+ -+.|-..+
T Consensus 418 ~~Fvpgd~~Iv~G~k~-----Gel~vfdlaS~~l~E-ti~AHdgaIWsi~~~pD~~g~vT~saDkt---VkfWdf~l~~~ 488 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTKN-----GELQVFDLASASLVE-TIRAHDGAIWSISLSPDNKGFVTGSADKT---VKFWDFKLVVS 488 (888)
T ss_pred EEecCCCceEEEeccC-----CceEEEEeehhhhhh-hhhccccceeeeeecCCCCceEEecCCcE---EEEEeEEEEec
Confidence 4566888888887663 358899999987765 343 233334457888 6554443321 12332222
Q ss_pred --CCCCCCceEeeeec----CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccce-eEEEeeeCC
Q 009441 269 --EADQSNDICLYHEK----DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGN 341 (534)
Q Consensus 269 --gt~~~~d~lv~~e~----d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~-~~~v~~~g~ 341 (534)
||. ..++-..+. =++-.+.+.+||||++|++.--+ .+-.||.+|.=.- +..|....--+ ...+++++.
T Consensus 489 ~~gt~--~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd-nTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 489 VPGTQ--KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD-NTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSK 563 (888)
T ss_pred cCccc--ceeeeeccceEEeccccEEEEEEcCCCcEEEEEecc-CeEEEEEecceee--eeeecccccceeEEeccCCcC
Confidence 221 111111100 01123457899999999886533 3446777763210 11122111111 123556544
Q ss_pred EEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC-CEEEEEEeeCCeeE
Q 009441 342 HFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQK 401 (534)
Q Consensus 342 ~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~ 401 (534)
+. +|.. ...|-+++-.|..+. .+-++++++ ++..+...+ .++++...++|.-+
T Consensus 564 -li-vTgS-ADKnVKiWGLdFGDC--HKS~fAHdD--Svm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 564 -LI-VTGS-ADKNVKIWGLDFGDC--HKSFFAHDD--SVMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred -eE-Eecc-CCCceEEeccccchh--hhhhhcccC--ceeEEEEcccceeEEEecCcceEE
Confidence 33 3433 235677777666432 122677653 366677665 68999998888543
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=86.91 E-value=22 Score=35.30 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=80.0
Q ss_pred EEEEEECCCCCeec--------cccCCccceeEEccCCeEEEEEECCCCCCceEEEeec---CCCCCCceEeeeecC--C
Q 009441 218 TVYVIDIETGTPVG--------KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL---EADQSNDICLYHEKD--D 284 (534)
Q Consensus 218 ~l~v~dl~tg~~~~--------~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l---gt~~~~d~lv~~e~d--~ 284 (534)
-|+++|.-+|+... +.+..+. .+.|+|||.-+|..... .|..+++ |-.-..-..++..+. .
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykr-----cirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKR-----CIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccc-----eEEEeeccCCCCCCcchhhhhccccccc
Confidence 36777777776542 1222233 48888888333444321 2222232 222100011221111 1
Q ss_pred ceEEEEEEcC-CCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeE-EEeeeCCEEEEEEcCCCCCccEEEEEeC
Q 009441 285 IYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLACPV 362 (534)
Q Consensus 285 ~~~v~~~~S~-Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~-~v~~~g~~lyi~tn~~~~~~~~L~~~~~ 362 (534)
+..-.++.+| +.+.+.+.+-. .+..||--+ +...+.++-.+..|+.. .+..+|++||.-... .-+|...|+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~-q~~giy~~~--~~~pl~llggh~gGvThL~~~edGn~lfsGaRk----~dkIl~WDi 280 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYG-QRVGIYNDD--GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK----DDKILCWDI 280 (406)
T ss_pred ceeeeeeccCCCCcceeeeccc-ceeeeEecC--CCCceeeecccCCCeeeEEeccCcCeecccccC----CCeEEEEee
Confidence 2222355666 44444443221 122334322 21135666666666543 366789988865543 246777777
Q ss_pred CCCCCceE-EecCCCCceee--eEEEeC-CEEEEEEeeCCeeEEEEEECCCCCC
Q 009441 363 DNTSETTV-LIPHRESVKLQ--DIQLFI-DHLAVYEREGGLQKITTYRLPAVGE 412 (534)
Q Consensus 363 ~~~~~~~~-li~~~~~~~l~--~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~g~ 412 (534)
......-| +--+..+. =+ -|++.+ +.++.....+|. |.++++++-|+
T Consensus 281 R~~~~pv~~L~rhv~~T-NQRI~FDld~~~~~LasG~tdG~--V~vwdlk~~gn 331 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDT-NQRILFDLDPKGEILASGDTDGS--VRVWDLKDLGN 331 (406)
T ss_pred hhccchhhhhhhhccCc-cceEEEecCCCCceeeccCCCcc--EEEEecCCCCC
Confidence 54221112 21121111 11 233333 456666656675 44556664344
No 154
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=86.76 E-value=4.3 Score=39.70 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=67.3
Q ss_pred ceEEeecchhcCC------CCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec----c-ccCCccceeEE
Q 009441 175 EHLILDENVKAEG------RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG----K-PLVGVTASVEW 243 (534)
Q Consensus 175 eevllD~n~~a~~------~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~----~-~i~~~~~~~~W 243 (534)
--.|||..+-+.+ .+..-+..+++.|.|.+|+.+.+ ..+++++|++|-+-.. + ...+....+.+
T Consensus 195 tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd-----Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 195 TVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD-----HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred eEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC-----CCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 3567886543221 12346788899999999998654 5789999999865331 1 22223345788
Q ss_pred ccCCeEEEEEECCCCCCceEEEeecCCCCCCceEe--eeecCCc-eEEEEEEcCCCcEEE
Q 009441 244 AGNEALVYITMDEILRPDKAWLHKLEADQSNDICL--YHEKDDI-YSLGLQASESKKFLF 300 (534)
Q Consensus 244 s~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv--~~e~d~~-~~v~~~~S~Dg~~l~ 300 (534)
++.|.+|.+...+. .|..|+ +.+ .+.| |++...+ -..++.+|++||||+
T Consensus 270 s~t~~lYvTaSkDG----~IklwD---GVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 270 SSTGSLYVTASKDG----AIKLWD---GVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred cCCccEEEEeccCC----cEEeec---ccc-HHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence 88888877764321 233333 111 1122 3332222 344678999999986
No 155
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=86.42 E-value=39 Score=34.05 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=84.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
++-.++++|+.+++|= |.+.-.-++|++.+|+.+- .+.+ ......|+-||.++-+. | -..+|..|+.
T Consensus 66 svFavsl~P~~~l~aT-----GGgDD~AflW~~~~ge~~~-eltgHKDSVt~~~FshdgtlLATG-d---msG~v~v~~~ 135 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVAT-----GGGDDLAFLWDISTGEFAG-ELTGHKDSVTCCSFSHDGTLLATG-D---MSGKVLVFKV 135 (399)
T ss_pred ceEEEEeCCCCceEEe-----cCCCceEEEEEccCCccee-EecCCCCceEEEEEccCceEEEec-C---CCccEEEEEc
Confidence 5666789997777663 4444578899999998654 3333 23458899999665554 2 1236777777
Q ss_pred CCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccc-eeE-EEeeeCCEEEEE
Q 009441 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDT-AASHRGNHFFIT 346 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g-~~~-~v~~~g~~lyi~ 346 (534)
.++.. ...++++-+. ...+.|-|-+..++..+.+ ..+|+-.+.... ...+.....- ... .+.++|+++...
T Consensus 136 stg~~-~~~~~~e~~d--ieWl~WHp~a~illAG~~D---GsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVED--IEWLKWHPRAHILLAGSTD---GSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred ccCce-EEEeecccCc--eEEEEecccccEEEeecCC---CcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEEEE
Confidence 66632 2233333222 2235677877666654433 346666665432 2233332111 111 155677776544
Q ss_pred EcCCCCCccEEEEEeCCC
Q 009441 347 RRSDELFNSELLACPVDN 364 (534)
Q Consensus 347 tn~~~~~~~~L~~~~~~~ 364 (534)
.. ++.|+..++.+
T Consensus 209 y~-----dgti~~Wn~kt 221 (399)
T KOG0296|consen 209 YD-----DGTIIVWNPKT 221 (399)
T ss_pred ec-----CceEEEEecCC
Confidence 43 24566666554
No 156
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=86.14 E-value=7.3 Score=38.53 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=63.9
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-CC--ccceeEEccCC-eEEEEEECCCCCCceEEEeec
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-~~--~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~l 268 (534)
|..+.|+-|.-++..+...+| .+.++++..-+-.. .| ++ .-+...||||| +++-++. -..++-.+.+
T Consensus 51 i~yieW~ads~~ilC~~yk~~----~vqvwsl~Qpew~c-kIdeg~agls~~~WSPdgrhiL~tse----F~lriTVWSL 121 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDP----KVQVWSLVQPEWYC-KIDEGQAGLSSISWSPDGRHILLTSE----FDLRITVWSL 121 (447)
T ss_pred hhheeeeccceeeeeeeeccc----eEEEEEeecceeEE-EeccCCCcceeeeECCCcceEeeeec----ceeEEEEEEe
Confidence 556789999999999988766 58889988766543 22 22 23458999999 7777652 1124555566
Q ss_pred CCCCCCceEeeeecCCceEE-EEEEcCCCcEEEEEecC
Q 009441 269 EADQSNDICLYHEKDDIYSL-GLQASESKKFLFIASES 305 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v-~~~~S~Dg~~l~i~~~~ 305 (534)
-|.. -.++ +.|...+ ++++.+||+|.+|.+..
T Consensus 122 ~t~~--~~~~---~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 122 NTQK--GYLL---PHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred ccce--eEEe---cccccCceeEEECCCCceeeeeecc
Confidence 5531 1222 1222222 56789999999987643
No 157
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.08 E-value=37 Score=33.42 Aligned_cols=73 Identities=25% Similarity=0.334 Sum_probs=46.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCC-CCeecc---ccCCccceeEEccCCeEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~t-g~~~~~---~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
+|+.+++||.-..++.+.+-+| +++++++.. |...+. .+++-.=.++|+.||...|+..-+ .++-.++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~----tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D----k~~k~wD 100 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDG----TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD----KQAKLWD 100 (347)
T ss_pred chheeEeccccCceEEecccCC----ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC----CceEEEE
Confidence 6888899995555555545444 789999875 555442 233322248999999555554321 2566678
Q ss_pred cCCCC
Q 009441 268 LEADQ 272 (534)
Q Consensus 268 lgt~~ 272 (534)
|.++|
T Consensus 101 L~S~Q 105 (347)
T KOG0647|consen 101 LASGQ 105 (347)
T ss_pred ccCCC
Confidence 87775
No 158
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=85.72 E-value=1.2 Score=44.91 Aligned_cols=44 Identities=18% Similarity=0.024 Sum_probs=34.7
Q ss_pred CCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCC
Q 009441 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527 (534)
Q Consensus 481 ~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg 527 (534)
...+.+..|.+.|.||..|-++|+.|++. +++.|+||..||.-|
T Consensus 51 ~~~~~vy~v~f~s~~g~~V~g~l~~P~~~---~~~~Pavv~~hGyg~ 94 (320)
T PF05448_consen 51 TPGVEVYDVSFESFDGSRVYGWLYRPKNA---KGKLPAVVQFHGYGG 94 (320)
T ss_dssp BSSEEEEEEEEEEGGGEEEEEEEEEES-S---SSSEEEEEEE--TT-
T ss_pred CCCEEEEEEEEEccCCCEEEEEEEecCCC---CCCcCEEEEecCCCC
Confidence 34678899999999999999999999954 479999999876444
No 159
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=85.66 E-value=69 Score=36.21 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=97.4
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccC-CeEEEEEECCCCCCceEEEeecCCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGN-EALVYITMDEILRPDKAWLHKLEADQ 272 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~D-g~l~Y~~~d~~~r~~~v~~~~lgt~~ 272 (534)
..+.+.|||++| ++.+.+|+ |++++..+-+..++.|......+.|... +..|.+... .+.|.+|+++.++
T Consensus 17 t~i~~d~~gefi-~tcgsdg~----ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~----~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 17 TLICYDPDGEFI-CTCGSDGD----IRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSE----QNTVLRYKFPSGE 87 (933)
T ss_pred EEEEEcCCCCEE-EEecCCCc----eEEeecCCcccCCchhhccCceeEEEeecccceEEeec----cceEEEeeCCCCC
Confidence 345799999944 44555554 6677655443444455533334667544 443344322 2478889998876
Q ss_pred CCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee--EEEeeeCCEEEEEEcCC
Q 009441 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRRSD 350 (534)
Q Consensus 273 ~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~--~~v~~~g~~lyi~tn~~ 350 (534)
.+ .++-.-.-|- -.+.++-+|+++++.+. ...|-++++.+...-+.+.+. ++.. ..+++.+..|.+.+-
T Consensus 88 ~~-~iL~Rftlp~--r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 88 ED-TILARFTLPI--RDLAVSGSGKMIAAGSD---DTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred cc-ceeeeeeccc--eEEEEecCCcEEEeecC---ceeEEEEeccccchheeeccc-CCceeeeeEcCCCCEEEEEec--
Confidence 43 3332111110 13578899999877543 346777777665412223222 2322 224455555544443
Q ss_pred CCCccEEEEEeCCCCCCc-eE--EecCCC---CceeeeEEEeCC--EEEEEEeeCCeeEEEEEECC
Q 009441 351 ELFNSELLACPVDNTSET-TV--LIPHRE---SVKLQDIQLFID--HLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~-~~--li~~~~---~~~l~~~~~~~~--~lv~~~~~~g~~~l~~~~l~ 408 (534)
+++|...++.+.... .| +.+..+ ......+.|.++ ++++...++ .|.+|+..
T Consensus 159 ---dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~---~Vkvy~r~ 218 (933)
T KOG1274|consen 159 ---DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN---TVKVYSRK 218 (933)
T ss_pred ---CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC---eEEEEccC
Confidence 256777777654321 23 333221 112345566543 555555443 24455554
No 160
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=85.29 E-value=1.4 Score=44.89 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=30.6
Q ss_pred CCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCC
Q 009441 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS 525 (534)
Q Consensus 481 ~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGg 525 (534)
.+.|..|++.+-+.+|..||++|+.|++. .++.|+||..||-
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~---~~p~PAVL~lHgH 124 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA---KGPFPAVLCLHGH 124 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT-----S-EEEEEEE--T
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC---CCCCCEEEEeCCC
Confidence 44789999999999999999999999976 4789999998875
No 161
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=85.17 E-value=15 Score=38.10 Aligned_cols=107 Identities=20% Similarity=0.125 Sum_probs=63.7
Q ss_pred EEEEEEECCCCC---------EEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCC-eEEEEEECCCC
Q 009441 192 SVGCFQVSPDNK---------LVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNE-ALVYITMDEIL 258 (534)
Q Consensus 192 ~l~~~~~SPDG~---------~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~ 258 (534)
.|-.++|||+|. .||-+.. ..++.++|+..|..+.. .-++++ .++++|+| .+.+-..|
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~-----dstV~lwdv~~gv~i~~f~kH~~pVy-svafS~~g~ylAsGs~d--- 473 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASF-----DSTVKLWDVESGVPIHTLMKHQEPVY-SVAFSPNGRYLASGSLD--- 473 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeec-----CCeEEEEEccCCceeEeeccCCCceE-EEEecCCCcEEEecCCC---
Confidence 466678999863 3343322 35899999999987652 223344 59999999 77776543
Q ss_pred CCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeC
Q 009441 259 RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (534)
Q Consensus 259 r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~ 316 (534)
-.|..+.+.+. .++-.-.+......+.|+.+|.+|.+..... .+.++|+
T Consensus 474 --g~V~iws~~~~----~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~---~vcvldl 522 (524)
T KOG0273|consen 474 --GCVHIWSTKTG----KLVKSYQGTGGIFELCWNAAGDKLGACASDG---SVCVLDL 522 (524)
T ss_pred --CeeEeccccch----heeEeecCCCeEEEEEEcCCCCEEEEEecCC---CceEEEe
Confidence 24555554443 1222212223334578999998887655432 3445543
No 162
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=85.12 E-value=26 Score=34.49 Aligned_cols=99 Identities=17% Similarity=0.344 Sum_probs=57.3
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCC------------CCeec---------cccCCccceeEEccCCeEEEE
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET------------GTPVG---------KPLVGVTASVEWAGNEALVYI 252 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~t------------g~~~~---------~~i~~~~~~~~Ws~Dg~l~Y~ 252 (534)
...++||||.++|- |+-...|.|+|++- |+... |..+.+ ..+.|.|-.+|+-.
T Consensus 116 R~aafs~DG~lvAT-----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev-n~l~FHPre~ILiS 189 (430)
T KOG0640|consen 116 RAAAFSPDGSLVAT-----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV-NDLDFHPRETILIS 189 (430)
T ss_pred eeeeeCCCCcEEEc-----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc-cceeecchhheEEe
Confidence 34579999999984 55568899999871 11110 011112 33666666666555
Q ss_pred EECCCCCCceEEEeecCCC-CCCceEeeeecCCceEEEEEEcCCCcEEEEEec
Q 009441 253 TMDEILRPDKAWLHKLEAD-QSNDICLYHEKDDIYSLGLQASESKKFLFIASE 304 (534)
Q Consensus 253 ~~d~~~r~~~v~~~~lgt~-~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~ 304 (534)
.. +...|..+++... .+..-.+|++..+- ..+++-|.|.||++...
T Consensus 190 ~s----rD~tvKlFDfsK~saKrA~K~~qd~~~v--rsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 190 GS----RDNTVKLFDFSKTSAKRAFKVFQDTEPV--RSISFHPSGEFLLVGTD 236 (430)
T ss_pred cc----CCCeEEEEecccHHHHHHHHHhhcccee--eeEeecCCCceEEEecC
Confidence 42 3345666665432 12233456654432 24677899999988653
No 163
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=84.87 E-value=17 Score=34.75 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=66.2
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccC-CccceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~-~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.+.+..+|+||++|..+- | ..+.++|..+=+.+.. .++ ++ .+..-.|+..+|... +....+|.++..
T Consensus 186 ~VtSlEvs~dG~ilTia~---g---ssV~Fwdaksf~~lKs~k~P~nV-~SASL~P~k~~fVaG----ged~~~~kfDy~ 254 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAY---G---SSVKFWDAKSFGLLKSYKMPCNV-ESASLHPKKEFFVAG----GEDFKVYKFDYN 254 (334)
T ss_pred CCcceeeccCCCEEEEec---C---ceeEEeccccccceeeccCcccc-ccccccCCCceEEec----CcceEEEEEecc
Confidence 467789999999987752 3 2588888887665542 233 33 336677887555543 234578888887
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeC
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~ 316 (534)
|+ +++-.|.....+-...+.+||||..-+..+. .++-.+|....
T Consensus 255 Tg--eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE-DGTirlWQt~~ 298 (334)
T KOG0278|consen 255 TG--EEIGSYNKGHFGPVHCVRFSPDGELYASGSE-DGTIRLWQTTP 298 (334)
T ss_pred CC--ceeeecccCCCCceEEEEECCCCceeeccCC-CceEEEEEecC
Confidence 77 3444552222222345788999985433222 23345666544
No 164
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.94 E-value=14 Score=38.44 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=47.9
Q ss_pred EEEEEEECCCCCeecc-ccC--C-ccceeEEccC--CeEEEEEECCCCCCceEEEeec-CCCCCCceEeeeec------C
Q 009441 217 YTVYVIDIETGTPVGK-PLV--G-VTASVEWAGN--EALVYITMDEILRPDKAWLHKL-EADQSNDICLYHEK------D 283 (534)
Q Consensus 217 ~~l~v~dl~tg~~~~~-~i~--~-~~~~~~Ws~D--g~l~Y~~~d~~~r~~~v~~~~l-gt~~~~d~lv~~e~------d 283 (534)
.+|+|||+.+.+.++. .+. + +.=.+.|+.| ..--|+... -...||++-- ..+.-+.+.|.+-+ .
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a---Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA---LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-----EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe---ccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 5899999999987752 222 1 1113556544 433444322 2345665432 11111122222211 1
Q ss_pred ------------CceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCcee
Q 009441 284 ------------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR 323 (534)
Q Consensus 284 ------------~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~ 323 (534)
|....++.+|.|.|||.+ ++..+.++...|+.++..++
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYv--s~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYV--SNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEE--EETTTTEEEEEE-SSTTS-E
T ss_pred cccccccccccCCCceEeEEEccCCCEEEE--EcccCCcEEEEecCCCCCCc
Confidence 345567889999999987 45566788888988865333
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=83.89 E-value=54 Score=33.49 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=72.7
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc------ccCC---ccceeEEccCC-eEEEEEECCCCCCce
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK------PLVG---VTASVEWAGNE-ALVYITMDEILRPDK 262 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~------~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~ 262 (534)
+-...|+|-+..+.- .|+|..++.||.+-.+-...+ .+.+ ..+-++|.|-- .++.++ +..+.
T Consensus 84 vLDi~w~PfnD~vIA----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa----g~Dn~ 155 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIA----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA----GSDNT 155 (472)
T ss_pred ccccccCccCCceee----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc----cCCce
Confidence 344578886654443 589999999999765533221 1222 24568898876 666654 23368
Q ss_pred EEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 263 AWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 263 v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
|..|++||+. + ++ .-+.|+...++.++.||..++-+..+ -.|.++|...++
T Consensus 156 v~iWnv~tge--a-li-~l~hpd~i~S~sfn~dGs~l~TtckD---KkvRv~dpr~~~ 206 (472)
T KOG0303|consen 156 VSIWNVGTGE--A-LI-TLDHPDMVYSMSFNRDGSLLCTTCKD---KKVRVIDPRRGT 206 (472)
T ss_pred EEEEeccCCc--e-ee-ecCCCCeEEEEEeccCCceeeeeccc---ceeEEEcCCCCc
Confidence 9999999983 2 22 22256777788899999987654433 256777766654
No 166
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.84 E-value=11 Score=41.56 Aligned_cols=122 Identities=14% Similarity=0.133 Sum_probs=74.4
Q ss_pred EEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-cc--------CC-ccceeEEccC
Q 009441 177 LILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL--------VG-VTASVEWAGN 246 (534)
Q Consensus 177 vllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i--------~~-~~~~~~Ws~D 246 (534)
-+.|.|.+.+ -|.++..+|||++..++.-. | .+++++...-+...+ .| .+ ...++.+.|.
T Consensus 443 ~Vv~W~Dl~~-----lITAvcy~PdGk~avIGt~~-G----~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~ 512 (712)
T KOG0283|consen 443 KVVDWNDLRD-----LITAVCYSPDGKGAVIGTFN-G----YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG 512 (712)
T ss_pred eeEeehhhhh-----hheeEEeccCCceEEEEEec-c----EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence 3466666653 57888999999999887553 3 577777776555432 11 11 1345888766
Q ss_pred C--eEEEEEECCCCCCceEEEeecCCCCCCceEeeeec-CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 247 E--ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 247 g--~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~-d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
. .++.++.|. +|..+++.+. +-+..|.+. +..-.+.+.++.||+||+..+ ..+.||+-+.+.
T Consensus 513 ~~~~vLVTSnDS-----rIRI~d~~~~--~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s---eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 513 DPDEVLVTSNDS-----RIRIYDGRDK--DLVHKFKGFRNTSSQISASFSSDGKHIVSAS---EDSWVYIWKNDS 577 (712)
T ss_pred CCCeEEEecCCC-----ceEEEeccch--hhhhhhcccccCCcceeeeEccCCCEEEEee---cCceEEEEeCCC
Confidence 5 688887663 5666665322 112234321 222235577889999998655 445677777654
No 167
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=83.74 E-value=34 Score=33.51 Aligned_cols=72 Identities=26% Similarity=0.305 Sum_probs=47.6
Q ss_pred eEEeecchhcCCCCcE---EEEEEEECC---CCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc----CCccceeEEcc
Q 009441 176 HLILDENVKAEGRGFY---SVGCFQVSP---DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL----VGVTASVEWAG 245 (534)
Q Consensus 176 evllD~n~~a~~~~~~---~l~~~~~SP---DG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i----~~~~~~~~Ws~ 245 (534)
-.+.|.|++.+...|. .|-+..+|| .+.+||.+.+ ..++++-|+++|..-. .+ .++. .++|+|
T Consensus 126 lKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr-----~~~VrLCDi~SGs~sH-~LsGHr~~vl-aV~Wsp 198 (397)
T KOG4283|consen 126 LKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR-----DVQVRLCDIASGSFSH-TLSGHRDGVL-AVEWSP 198 (397)
T ss_pred EEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecC-----CCcEEEEeccCCccee-eeccccCceE-EEEecc
Confidence 4568888877533322 244556777 4666766433 3689999999997643 23 2343 499999
Q ss_pred CC-eEEEEEE
Q 009441 246 NE-ALVYITM 254 (534)
Q Consensus 246 Dg-~l~Y~~~ 254 (534)
.. .++|+..
T Consensus 199 ~~e~vLatgs 208 (397)
T KOG4283|consen 199 SSEWVLATGS 208 (397)
T ss_pred CceeEEEecC
Confidence 98 8888864
No 168
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=83.47 E-value=5.6 Score=42.30 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=58.7
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~ 272 (534)
+...++||+.++|+.+.. ...|.++|...+-......+=+..-++|.|+|.++.+..+ ..++.+++++-..
T Consensus 262 v~~ca~sp~E~kLvlGC~-----DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~----qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCE-----DGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSE----QGELQCFDMALSP 332 (545)
T ss_pred ceEEecCcccceEEEEec-----CCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcC----CceEEEEEeecCc
Confidence 556789999999999755 3469999988774432212212345899999988887743 2368888887665
Q ss_pred CCceEeeeecCCceEEE
Q 009441 273 SNDICLYHEKDDIYSLG 289 (534)
Q Consensus 273 ~~d~lv~~e~d~~~~v~ 289 (534)
-.-+++-|+..|.-.+.
T Consensus 333 i~~qLlsEd~~P~~~L~ 349 (545)
T PF11768_consen 333 IKMQLLSEDATPKSTLQ 349 (545)
T ss_pred cceeeccccCCCccEEe
Confidence 55555656655554443
No 169
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=83.32 E-value=80 Score=35.06 Aligned_cols=206 Identities=16% Similarity=0.117 Sum_probs=99.7
Q ss_pred EEEEEEECCCCCEEEEE----------------------EcCCCCeEEEEEEEECCCCCeeccccCCc-cceeEEccCC-
Q 009441 192 SVGCFQVSPDNKLVAYA----------------------EDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE- 247 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~----------------------~d~~G~E~~~l~v~dl~tg~~~~~~i~~~-~~~~~Ws~Dg- 247 (534)
.+...+|||+|+.+++. .+..|.+..++++.|.++ +.......+. ...+.|.+++
T Consensus 102 ~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 180 (620)
T COG1506 102 GVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGR 180 (620)
T ss_pred ccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCc
Confidence 35566788888888872 111223567777777765 2211111122 2235566666
Q ss_pred eEEEEEECCCCCC--ceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCc-----ceeEEEEEeCCCCC
Q 009441 248 ALVYITMDEILRP--DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK-----ITRFVFYLDVSKPE 320 (534)
Q Consensus 248 ~l~Y~~~d~~~r~--~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~-----~~~ev~~~d~~~~~ 320 (534)
.++.++.+....+ ...+....++. ......+ .+.....+.+.+||+.+++..... .....++.+.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (620)
T COG1506 181 LVASIRLDDDADPWVTNLYVLIEGNG---ELESLTP-GEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGE 256 (620)
T ss_pred eeEEeeeccccCCceEeeEEEecCCC---ceEEEcC-CCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccc
Confidence 5555554332112 12222222221 1222222 223344567889999877765432 12345665522222
Q ss_pred ceeEeeecc---cce-eEEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEee
Q 009441 321 ELRVLTPRV---VGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYERE 396 (534)
Q Consensus 321 ~~~~l~~~~---~g~-~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~ 396 (534)
........ .+. .....-.++.+++.+.. ......++........ ..+ ...+...+.++.+.++.+++....
T Consensus 257 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~l~~~~~~~~~--~~~-~~~~~~~v~~f~~~~~~~~~~~s~ 331 (620)
T COG1506 257 -VDGDLSSGDDTRGAWAVEGGLDGDGLLFIATD-GGGSSPLFRVDDLGGG--VEG-LSGDDGGVPGFDVDGRKLALAYSS 331 (620)
T ss_pred -cceeeccCCcccCcHHhccccCCCcEEEEEec-CCCceEEEEEeccCCc--eee-ecCCCceEEEEeeCCCEEEEEecC
Confidence 11111110 010 01111346667777664 2445666666543221 122 223334578888777788887776
Q ss_pred CC-eeEEEEEEC
Q 009441 397 GG-LQKITTYRL 407 (534)
Q Consensus 397 ~g-~~~l~~~~l 407 (534)
.. .+++++++.
T Consensus 332 ~~~p~~i~~~~~ 343 (620)
T COG1506 332 PTEPPEIYLYDR 343 (620)
T ss_pred CCCccceEEEcC
Confidence 55 457887764
No 170
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.30 E-value=45 Score=32.10 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=100.3
Q ss_pred EEECC-CCCEEEEEEcCC-C-CeEEEEEEEECCCCCeecc-----ccCCccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 196 FQVSP-DNKLVAYAEDTK-G-DEIYTVYVIDIETGTPVGK-----PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 196 ~~~SP-DG~~LA~~~d~~-G-~E~~~l~v~dl~tg~~~~~-----~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
+++|| -.++||.+.... | .....|+|+|++.++-+.+ .-++.+ .++|++.. ...++...+. .+..+
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~Lf-dV~Wse~~e~~~~~a~GDG----SLrl~ 88 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLF-DVAWSENHENQVIAASGDG----SLRLF 88 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeeccccee-EeeecCCCcceEEEEecCc----eEEEe
Confidence 46777 234455444331 1 1235799999964433322 112334 49999887 7878775321 34444
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcc-eeEEEEEeCCCCCceeEeeecccceeEE--EeeeCCEE
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-TRFVFYLDVSKPEELRVLTPRVVGVDTA--ASHRGNHF 343 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~-~~ev~~~d~~~~~~~~~l~~~~~g~~~~--v~~~g~~l 343 (534)
+++-+ +....+|.|.... ..++.+.+-.++.++++ +.+ +-.+|..+... .++.+.. .+...|. +++.-..+
T Consensus 89 d~~~~-s~Pi~~~kEH~~E-V~Svdwn~~~r~~~lts-SWD~TiKLW~~~r~~--Sv~Tf~g-h~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 89 DLTMP-SKPIHKFKEHKRE-VYSVDWNTVRRRIFLTS-SWDGTIKLWDPNRPN--SVQTFNG-HNSCIYQAAFSPHIPNL 162 (311)
T ss_pred ccCCC-CcchhHHHhhhhh-eEEeccccccceeEEee-ccCCceEeecCCCCc--ceEeecC-CccEEEEEecCCCCCCe
Confidence 55544 3456677664322 33466777778888776 443 34566544322 2333322 2223344 45444444
Q ss_pred EEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEe--CCEEEEEEeeCCeeEEEEEECC
Q 009441 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 344 yi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l~ 408 (534)
+.-+..+ ..-+|. |+..++. .-.|+... ..|..++|. ++.++++...++. |+..|+.
T Consensus 163 fas~Sgd--~~l~lw--dvr~~gk-~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~--vr~wDir 221 (311)
T KOG0277|consen 163 FASASGD--GTLRLW--DVRSPGK-FMSIEAHN-SEILCCDWSKYNHNVLATGGVDNL--VRGWDIR 221 (311)
T ss_pred EEEccCC--ceEEEE--EecCCCc-eeEEEecc-ceeEeecccccCCcEEEecCCCce--EEEEehh
Confidence 4433322 233444 4443432 22444432 346667775 4677877776664 5666765
No 171
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=82.56 E-value=63 Score=33.33 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=104.9
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe----ec-c-cc---CCccceeEEccCC-eEEEEEECCCCCCceEEE
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP----VG-K-PL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~----~~-~-~i---~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~ 265 (534)
+.|++.-.-... +|++..++.++|+..... +. . .+ ..+...++|.+-. .+|-+..|+ .++..
T Consensus 183 lsWn~~~~g~Ll----s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd----~~L~i 254 (422)
T KOG0264|consen 183 LSWNRQQEGTLL----SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD----GKLMI 254 (422)
T ss_pred cccccccceeEe----eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC----CeEEE
Confidence 356664332222 245557899999875533 11 1 11 1234558898776 555444332 36777
Q ss_pred eecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-ceeEeeecccce-eEEEeeeCCEE
Q 009441 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGV-DTAASHRGNHF 343 (534)
Q Consensus 266 ~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~~~l~~~~~g~-~~~v~~~g~~l 343 (534)
+++.+.+.+....-...+... -.+++.|-+.+|+.+.++ ...|.+.|+++.. .+..+-...+.+ ...++++.+.+
T Consensus 255 wD~R~~~~~~~~~~~ah~~~v-n~~~fnp~~~~ilAT~S~--D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEV-NCVAFNPFNEFILATGSA--DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred EEcCCCCCCCcccccccCCce-eEEEeCCCCCceEEeccC--CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence 777643212111111111122 236778888888766543 3457777887754 233333222222 24477888888
Q ss_pred EEEEcCCCCCccEEEEEeCCCCCCc-----------eEEecCC-CCceeeeEEEeC--CEEEEEEeeCCeeEEEEEE
Q 009441 344 FITRRSDELFNSELLACPVDNTSET-----------TVLIPHR-ESVKLQDIQLFI--DHLAVYEREGGLQKITTYR 406 (534)
Q Consensus 344 yi~tn~~~~~~~~L~~~~~~~~~~~-----------~~li~~~-~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~ 406 (534)
+..+.. ..+|...|+..-+.. +.++-+. .-..+.+|.|.+ -.+++...+++.-+|+.+.
T Consensus 332 LASSg~----D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 332 LASSGT----DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEeccc----CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 765543 367888777532111 1133332 223467777765 3677788888877777653
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=82.40 E-value=22 Score=38.35 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=42.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe-ecc---ccCCccceeEEccCC-eEEEEEECC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGK---PLVGVTASVEWAGNE-ALVYITMDE 256 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~-~~~---~i~~~~~~~~Ws~Dg-~l~Y~~~d~ 256 (534)
.|-+++|||||+++|-... + .+|+|++..+++. +.+ ........+.|.-|| .+..+.+|.
T Consensus 722 qIf~~AWSpdGr~~AtVcK-D----g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVCK-D----GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ceeEEEECCCCcceeeeec-C----ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 4667899999999997654 2 3799999988864 222 122234568999999 666666664
No 173
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=82.29 E-value=48 Score=31.78 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=60.9
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC--c-cceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--V-TASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~--~-~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
|..+.+.|+...|.. -|.+| .|+|+|+....-..+.++. . ...+.-.+||..+-..++ . ...|.+++-
T Consensus 127 Vn~vvlhpnQteLis-~dqsg----~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn-k---G~cyvW~l~ 197 (311)
T KOG0315|consen 127 VNTVVLHPNQTELIS-GDQSG----NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN-K---GNCYVWRLL 197 (311)
T ss_pred cceEEecCCcceEEe-ecCCC----cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC-C---ccEEEEEcc
Confidence 455566776655433 34444 6999999876433222222 1 234667788844333322 1 246666664
Q ss_pred CCCCCceEe----eeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 270 ADQSNDICL----YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 270 t~~~~d~lv----~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
+.+....++ |. ...++.+....|||+|||+-.+..+ ++++-+.++
T Consensus 198 ~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdk---tv~iwn~~~ 246 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDK---TVKIWNTDD 246 (311)
T ss_pred CCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCc---eEEEEecCC
Confidence 433221111 11 1345666778899999987654433 455555555
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=82.16 E-value=18 Score=36.87 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=59.0
Q ss_pred cchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECC--------C-----CC-eec-ccc----CCcccee
Q 009441 181 ENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--------T-----GT-PVG-KPL----VGVTASV 241 (534)
Q Consensus 181 ~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~--------t-----g~-~~~-~~i----~~~~~~~ 241 (534)
...|+ ....++..+++||+|..||=+-| ..++++|-.. + .+ .+. ..+ +.++ .+
T Consensus 58 ~s~Ls--~H~~aVN~vRf~p~gelLASg~D-----~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy-dL 129 (434)
T KOG1009|consen 58 LSSLS--RHTRAVNVVRFSPDGELLASGGD-----GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY-DL 129 (434)
T ss_pred eeccc--CCcceeEEEEEcCCcCeeeecCC-----CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchh-hh
Confidence 34454 34568899999999999995433 3445555433 2 11 000 011 2233 48
Q ss_pred EEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEe
Q 009441 242 EWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIAS 303 (534)
Q Consensus 242 ~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~ 303 (534)
+|++|+ .+...+.| +.++.+++..++. . .+..+ +..+--+++|.|-++|+.-.+
T Consensus 130 ~Ws~d~~~l~s~s~d-----ns~~l~Dv~~G~l-~-~~~~d-h~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVD-----NSVRLWDVHAGQL-L-AILDD-HEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hccCCCceeeeeecc-----ceEEEEEecccee-E-eeccc-cccccceeecchhhhhhhhhc
Confidence 999999 44444444 3566777766642 1 12221 223333577888888765443
No 175
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=81.89 E-value=87 Score=34.44 Aligned_cols=216 Identities=12% Similarity=0.041 Sum_probs=113.7
Q ss_pred ceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCc--ceeEEEEEe
Q 009441 239 ASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK--ITRFVFYLD 315 (534)
Q Consensus 239 ~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~--~~~ev~~~d 315 (534)
+.++=+||+ .+.|.-.....+.+.+...+|.|++.-...+ ....-++.|..|++.++.+.... ....||...
T Consensus 132 g~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 132 GAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 345668888 6666654334455677777887763211111 11223467899999999887543 346788888
Q ss_pred CCCCC-ceeEeeecccceeEE--Ee--eeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEe-cCCCCceeeeEEEeCCE
Q 009441 316 VSKPE-ELRVLTPRVVGVDTA--AS--HRGNHFFITRRSDELFNSELLACPVDNTSETTVLI-PHRESVKLQDIQLFIDH 389 (534)
Q Consensus 316 ~~~~~-~~~~l~~~~~g~~~~--v~--~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li-~~~~~~~l~~~~~~~~~ 389 (534)
+.++. .-+++....+. .+. +. ..+..|++..+ +....++..++.+.++...+++ |...+. --.++..+++
T Consensus 207 ~gt~~~~d~lvyeE~d~-~f~~~v~~s~s~~yi~i~~~--~~~tsE~~ll~a~~p~~~p~vv~pr~~g~-eY~~eh~~d~ 282 (682)
T COG1770 207 LGTPGSSDELVYEEKDD-RFFLSVGRSRSEAYIVISLG--SHITSEVRLLDADDPEAEPKVVLPRENGV-EYSVEHGGDR 282 (682)
T ss_pred cCCCCCcceEEEEcCCC-cEEEEeeeccCCceEEEEcC--CCcceeEEEEecCCCCCceEEEEEcCCCc-EEeeeecCcE
Confidence 87743 33445544332 222 32 23445555554 3455677777777776544544 443342 2345556789
Q ss_pred EEEEEeeCCe-eEEEEEECCCCCCcccccCCCceeeecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEE
Q 009441 390 LAVYEREGGL-QKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 468 (534)
Q Consensus 390 lv~~~~~~g~-~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~ 468 (534)
.++..+.+|. -+|+...... .+ ..+ ...|+-++.. .+.++.. -.+.+++...+--.| .++..+.++++..
T Consensus 283 f~i~sN~~gknf~l~~ap~~~-~~--~~w--~~~I~h~~~~-~l~~~~~--f~~~lVl~eR~~glp-~v~v~~~~~~~~~ 353 (682)
T COG1770 283 FYILSNADGKNFKLVRAPVSA-DK--SNW--RELIPHREDV-RLEGVDL--FADHLVLLERQEGLP-RVVVRDRKTGEER 353 (682)
T ss_pred EEEEecCCCcceEEEEccCCC-Ch--hcC--eeeeccCCCc-eeeeeee--eccEEEEEecccCCc-eEEEEecCCCcee
Confidence 9999999883 2444333311 11 000 0122222211 2332221 234555555555544 4566677666655
Q ss_pred EEEE
Q 009441 469 LKKI 472 (534)
Q Consensus 469 ~~~~ 472 (534)
.+..
T Consensus 354 ~i~f 357 (682)
T COG1770 354 GIAF 357 (682)
T ss_pred eEEe
Confidence 4443
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=81.61 E-value=1.6 Score=43.96 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=64.4
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccc--cCCccceeEEccCC-eEEEEEECCCCCC------ceE
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRP------DKA 263 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~--i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~------~~v 263 (534)
+-...|||||.+++.+.- ...++++|+..|..+... -.+...+++|.|-+ .+.-.+.|...+. ..+
T Consensus 126 iydL~Ws~d~~~l~s~s~-----dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSV-----DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred hhhhhccCCCceeeeeec-----cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence 345679999999988633 357899999999876521 12234679998887 4444444442221 123
Q ss_pred EEeec-----CCCC---CCceEeee-ecCCceEEEEEEcCCCcEEEEEec
Q 009441 264 WLHKL-----EADQ---SNDICLYH-EKDDIYSLGLQASESKKFLFIASE 304 (534)
Q Consensus 264 ~~~~l-----gt~~---~~d~lv~~-e~d~~~~v~~~~S~Dg~~l~i~~~ 304 (534)
+++.. +... ..-.-+|. |.-+.||-..++||||..++.-+.
T Consensus 201 ~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 201 KRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 33331 1111 11123454 344568878899999998876653
No 177
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=81.57 E-value=19 Score=37.70 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=60.6
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCc-cceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCC
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 273 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~-~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~ 273 (534)
..+.|.| .||.+.- ...+.|+|.++...+....++. -+-+.++||| .|..-+.| ..||.+++...-
T Consensus 413 ~~fhpsg-~va~Gt~-----~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d-----~~iyiy~Vs~~g- 480 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTA-----TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD-----NHIYIYRVSANG- 480 (626)
T ss_pred eeccCcc-eEEEeec-----cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC-----CeEEEEEECCCC-
Confidence 3456666 6665443 3468899998866655433342 3558899999 56555543 257777765431
Q ss_pred CceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEE
Q 009441 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYL 314 (534)
Q Consensus 274 ~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~ 314 (534)
.-......-...+...+.||.|++|+. +++.+..-+|..
T Consensus 481 ~~y~r~~k~~gs~ithLDwS~Ds~~~~--~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 481 RKYSRVGKCSGSPITHLDWSSDSQFLV--SNSGDYEILYWK 519 (626)
T ss_pred cEEEEeeeecCceeEEeeecCCCceEE--eccCceEEEEEc
Confidence 111111111124566688999999975 344444445553
No 178
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=81.11 E-value=79 Score=33.48 Aligned_cols=139 Identities=16% Similarity=0.112 Sum_probs=74.3
Q ss_pred cCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCee----cc--ccC-CccceeEEccCC-eEEEEEECC
Q 009441 185 AEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV----GK--PLV-GVTASVEWAGNE-ALVYITMDE 256 (534)
Q Consensus 185 a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~----~~--~i~-~~~~~~~Ws~Dg-~l~Y~~~d~ 256 (534)
.-.+|.-.|.+..+.|.|-+++ .|+=.|+++.||..+-... .. +-+ +....+.|++.| .|+.++-..
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~-----sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFV-----SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred eccCCceEEEEeeecCCCceee-----eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 3346788899999999998887 3666799999998764321 11 122 233458999998 776665321
Q ss_pred C----CC-CceEEEeecCCCCCCceEeeeecCCce-EEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccc
Q 009441 257 I----LR-PDKAWLHKLEADQSNDICLYHEKDDIY-SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330 (534)
Q Consensus 257 ~----~r-~~~v~~~~lgt~~~~d~lv~~e~d~~~-~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~ 330 (534)
. .| ...+....-|.. .-+-++..+..-. .....|-|+.+-.|++++...+-.+|-++-... ..+++.++..
T Consensus 237 qakl~DRdG~~~~e~~KGDQ--YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~~ 313 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQ--YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKPA 313 (641)
T ss_pred ceeEEccCCceeeeeeccch--hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeeccC
Confidence 0 00 011111111110 0000010000000 112357888888888877766666665543222 3555555433
Q ss_pred c
Q 009441 331 G 331 (534)
Q Consensus 331 g 331 (534)
|
T Consensus 314 ~ 314 (641)
T KOG0772|consen 314 G 314 (641)
T ss_pred C
Confidence 3
No 179
>PRK10162 acetyl esterase; Provisional
Probab=80.78 E-value=2.5 Score=42.60 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=29.9
Q ss_pred cEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCC
Q 009441 484 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY 526 (534)
Q Consensus 484 ~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgy 526 (534)
..++.+.+++.+| .||+.|++|+.- +.|+|||.|||-
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~~-----~~p~vv~~HGGg 91 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQPD-----SQATLFYLHGGG 91 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCCC-----CCCEEEEEeCCc
Confidence 4578888999999 599999888632 369999999976
No 180
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=80.49 E-value=25 Score=40.89 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=61.2
Q ss_pred EEEECCCCCEEEEEEcCCC-CeEEEEEEEECCCCCeec--cccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCC
Q 009441 195 CFQVSPDNKLVAYAEDTKG-DEIYTVYVIDIETGTPVG--KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G-~E~~~l~v~dl~tg~~~~--~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
.++|-.||+|+|.+.-... +..-.|+|++-+ |+... +.+.+..+.++|-|.|.+.-+......+ ..|-.+....-
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~-~~VvFfErNGL 291 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR-HDVVFFERNGL 291 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC-cEEEEEecCCc
Confidence 4578899999999865222 247899999976 65432 3556666679999999544443322222 23333222110
Q ss_pred CCCceEeeee-cCCceEEEEEEcCCCcEEEEEec
Q 009441 272 QSNDICLYHE-KDDIYSLGLQASESKKFLFIASE 304 (534)
Q Consensus 272 ~~~d~lv~~e-~d~~~~v~~~~S~Dg~~l~i~~~ 304 (534)
......... .+..-...+.|+.|+..|++...
T Consensus 292 -rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 292 -RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred -EeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 011111111 11122346889999999988764
No 181
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.38 E-value=64 Score=31.98 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=45.1
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec-cccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~-~~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
|..+++.|.|| ||.++. |+ ..|+.|||-.|+.-- ..+.+....+.|+|.| +|+... +.+|=.|.+++
T Consensus 130 Vt~lsiHPS~K-LALsVg--~D--~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~------~~~i~i~q~d~ 198 (362)
T KOG0294|consen 130 VTDLSIHPSGK-LALSVG--GD--QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG------RNKIDIYQLDN 198 (362)
T ss_pred cceeEecCCCc-eEEEEc--CC--ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe------ccEEEEEeccc
Confidence 88889999997 555554 44 368999998886422 2455555569999999 565554 23565666654
No 182
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=80.16 E-value=63 Score=32.79 Aligned_cols=151 Identities=9% Similarity=0.077 Sum_probs=79.2
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC--C---ccceeEEccCC-eEEEEEECCCCCCceEEEeecC
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--G---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~--~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
+.||| +.++.-..|+=...|+++...+|.-..+..+ + ....+.|||.. ++|.+..-+ ..|..+++.
T Consensus 217 LdWSp----~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D----gsIrIWDiR 288 (440)
T KOG0302|consen 217 LDWSP----IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD----GSIRIWDIR 288 (440)
T ss_pred eeccc----ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC----ceEEEEEec
Confidence 47888 4455455688788999999999876544332 1 23458899987 888776422 134445555
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC--ceeEeeecccceeEE--EeeeCCEEEE
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGVDTA--ASHRGNHFFI 345 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~--~~~~l~~~~~g~~~~--v~~~g~~lyi 345 (534)
.++.+..+.....+.+..+ +.|+.+-. ++.++ .....+.+.|+..-+ .+...+++-....+. +.+..+..+.
T Consensus 289 s~~~~~~~~~kAh~sDVNV-ISWnr~~~--lLasG-~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 289 SGPKKAAVSTKAHNSDVNV-ISWNRREP--LLASG-GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred CCCccceeEeeccCCceee-EEccCCcc--eeeec-CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEE
Confidence 5544443443322333332 44554444 33332 233445556665432 233233333333343 4455566655
Q ss_pred EEcCCCCCccEEEEEeC
Q 009441 346 TRRSDELFNSELLACPV 362 (534)
Q Consensus 346 ~tn~~~~~~~~L~~~~~ 362 (534)
.+..+ .++...|+
T Consensus 365 asg~D----~QitiWDl 377 (440)
T KOG0302|consen 365 ASGED----NQITIWDL 377 (440)
T ss_pred eccCC----CcEEEEEe
Confidence 55432 35544444
No 183
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.10 E-value=14 Score=40.36 Aligned_cols=112 Identities=14% Similarity=0.039 Sum_probs=59.6
Q ss_pred EEEEECCCCCEEEEEEc--CCCCeEEEEEEEECCCCCeeccccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCC
Q 009441 194 GCFQVSPDNKLVAYAED--TKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d--~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
....+||||+++..+.- ..| .++.+++......+. .-+....-++.+||.+.|+. .++|-..+..+.
T Consensus 238 d~v~~spdGk~afvTsyNsE~G---~tl~em~a~e~d~~v--vfni~~iea~vkdGK~~~V~------gn~V~VID~~t~ 306 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNSEEG---VTLAEMMAAERDWVV--VFNIARIEEAVKAGKFKTIG------GSKVPVVDGRKA 306 (635)
T ss_pred ccceECCCCCEEEEeccCcccC---cceeeeccccCceEE--EEchHHHHHhhhCCCEEEEC------CCEEEEEECCcc
Confidence 35689999999988863 233 356666654333211 11111112456788443431 235666565441
Q ss_pred CC-CceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 272 QS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 272 ~~-~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
.. ...+++.-+-+..=.++.+||||+|+++ +++.++.+-++|++.
T Consensus 307 ~~~~~~v~~yIPVGKsPHGV~vSPDGkylyV--anklS~tVSVIDv~k 352 (635)
T PRK02888 307 ANAGSALTRYVPVPKNPHGVNTSPDGKYFIA--NGKLSPTVTVIDVRK 352 (635)
T ss_pred ccCCcceEEEEECCCCccceEECCCCCEEEE--eCCCCCcEEEEEChh
Confidence 00 0123322111222235778999999886 445566788888866
No 184
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=79.96 E-value=81 Score=32.86 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=38.9
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCc---cceeEEccCCeEEEEE
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV---TASVEWAGNEALVYIT 253 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~---~~~~~Ws~Dg~l~Y~~ 253 (534)
+....-||+|.+|+- |.+.-.||+|.+.+|+.+.. +..- ..-+.++.||..+++.
T Consensus 84 v~al~s~n~G~~l~a-----g~i~g~lYlWelssG~LL~v-~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 84 VHALASSNLGYFLLA-----GTISGNLYLWELSSGILLNV-LSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred eeeeecCCCceEEEe-----ecccCcEEEEEeccccHHHH-HHhhccceeEEEEeCCCcEEEec
Confidence 556678999999885 44556899999999998752 2211 1337788888666665
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=79.78 E-value=54 Score=33.45 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=42.7
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.++-+.|.|--.-+..+ .|.| +++.|||+.||+.+-. .-+....++.|+-||+++-++..+ .+|..++..
T Consensus 133 rVg~V~wHPtA~NVLls---ag~D-n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD----KkvRv~dpr 203 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLS---AGSD-NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD----KKVRVIDPR 203 (472)
T ss_pred eEEEEeecccchhhHhh---ccCC-ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc----ceeEEEcCC
Confidence 46666777755444433 2332 7899999999987642 224444568999999665665322 245544544
No 186
>PRK13613 lipoprotein LpqB; Provisional
Probab=79.58 E-value=1e+02 Score=34.10 Aligned_cols=165 Identities=16% Similarity=0.110 Sum_probs=83.3
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe----eccccCC-ccceeEEccCCeEEEEEECCCCCCceEEEe
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP----VGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~----~~~~i~~-~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~ 266 (534)
.+.+..+|+||+.+|+... + ...+++-.+..+.. ....+.+ ......|..+|.++ +. |......++.+.
T Consensus 364 ~~~s~avS~~g~~~A~v~~-~---~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~vW-tv-d~~~~~~~vl~v 437 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA-D---GDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGDLW-VV-DRDPADPRLLWL 437 (599)
T ss_pred CccceEEcCCCceEEEEcC-C---CcEEEEeccCCCCccccccceeeccCcccCCcCcCCCCEE-Ee-cCCCCCceEEEE
Confidence 5667899999999998832 2 25788876654433 1112332 23457888877433 33 321112233332
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC---CC----ceeEeeeccccee-EEEee
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK---PE----ELRVLTPRVVGVD-TAASH 338 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~---~~----~~~~l~~~~~g~~-~~v~~ 338 (534)
.-+++....+-.- +-+..-...+.+|+||-.+++.+.......|++.-+.. +. .++.+.+....+. ..| .
T Consensus 438 ~~~~G~~~~V~~~-~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W-~ 515 (599)
T PRK13613 438 LQGDGEPVEVRTP-ELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSW-A 515 (599)
T ss_pred EcCCCcEEEeecc-ccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEE-c
Confidence 2222211111111 11111344688999999988877654445555543322 21 1222222211111 113 3
Q ss_pred eCCEEEEEEcCCCCCccEEEEEeCCCC
Q 009441 339 RGNHFFITRRSDELFNSELLACPVDNT 365 (534)
Q Consensus 339 ~g~~lyi~tn~~~~~~~~L~~~~~~~~ 365 (534)
.++.|.++... ...+..+..++++..
T Consensus 516 ~~~sL~Vlg~~-~~~~~~v~~v~vdG~ 541 (599)
T PRK13613 516 GDSQLVVLGRE-EGGVQQARYVQVDGS 541 (599)
T ss_pred CCCEEEEEecc-CCCCcceEEEecCCc
Confidence 46778776643 233566777777643
No 187
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=79.19 E-value=96 Score=33.34 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.9
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG 227 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg 227 (534)
..+.+||||+||.-+ |.=..+|+++|++.=
T Consensus 55 t~ik~s~DGqY~lAt----G~YKP~ikvydlanL 84 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLAT----GTYKPQIKVYDLANL 84 (703)
T ss_pred ceeEecCCCcEEEEe----cccCCceEEEEcccc
Confidence 467899999998764 655679999999754
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=78.34 E-value=44 Score=32.71 Aligned_cols=114 Identities=13% Similarity=0.213 Sum_probs=68.2
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCee-cc-----ccCC--ccceeEEcc--CCeEEEEEECCCCCCc
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GK-----PLVG--VTASVEWAG--NEALVYITMDEILRPD 261 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~-~~-----~i~~--~~~~~~Ws~--Dg~l~Y~~~d~~~r~~ 261 (534)
.+..+.|-||++.||-..+ ..|.+++++.+..+ .+ ..+. -+.+-+|+| ||.-+-++.+ .
T Consensus 125 ~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d-----~ 193 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD-----S 193 (370)
T ss_pred ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC-----C
Confidence 4778899999999998764 36888998887652 21 1121 245578998 5533334333 2
Q ss_pred eEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 262 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 262 ~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
.++.+++.|... ..-.+........++.+.|..++++++.++.. -|.+-|+...+
T Consensus 194 tl~~~D~RT~~~--~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg--yvriWD~R~tk 248 (370)
T KOG1007|consen 194 TLQFWDLRTMKK--NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG--YVRIWDTRKTK 248 (370)
T ss_pred cEEEEEccchhh--hcchhhhhcceeeeccCCCCceEEEEEcCCCc--cEEEEeccCCC
Confidence 567777765421 11222222233445677888999887665543 34555665543
No 189
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=78.22 E-value=81 Score=31.92 Aligned_cols=196 Identities=12% Similarity=0.118 Sum_probs=103.4
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCC-eEEEEE---------ECCC
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNE-ALVYIT---------MDEI 257 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg-~l~Y~~---------~d~~ 257 (534)
..+..++|.+ -.++|++-.+. -.++|+|-.+..+... .-.++ ..++|-|-+ .-+-+. .+.+
T Consensus 99 ~dlr~~aWhq--H~~~fava~nd---dvVriy~ksst~pt~Lks~sQrnv-tclawRPlsaselavgCr~gIciW~~s~t 172 (445)
T KOG2139|consen 99 IDLRGVAWHQ--HIIAFAVATND---DVVRIYDKSSTCPTKLKSVSQRNV-TCLAWRPLSASELAVGCRAGICIWSDSRT 172 (445)
T ss_pred cceeeEeech--hhhhhhhhccC---cEEEEeccCCCCCceecchhhcce-eEEEeccCCcceeeeeecceeEEEEcCcc
Confidence 3467778877 55666655432 3788887665332211 11233 348998876 322222 1221
Q ss_pred CCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeec-cccee-EE
Q 009441 258 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVD-TA 335 (534)
Q Consensus 258 ~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~-~~g~~-~~ 335 (534)
....+..+ .++.. .--|+..++....-+..+.+||..++- .+..++.+-+-+.+++. -.++.++ ..|.. .-
T Consensus 173 ln~~r~~~--~~s~~--~~qvl~~pgh~pVtsmqwn~dgt~l~t--AS~gsssi~iWdpdtg~-~~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 173 LNANRNIR--MMSTH--HLQVLQDPGHNPVTSMQWNEDGTILVT--ASFGSSSIMIWDPDTGQ-KIPLIPKGLGGFSLLK 245 (445)
T ss_pred cccccccc--ccccc--chhheeCCCCceeeEEEEcCCCCEEee--cccCcceEEEEcCCCCC-cccccccCCCceeeEE
Confidence 11111111 22211 122444433333335789999977643 34444555555555544 3334433 33432 34
Q ss_pred EeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECC
Q 009441 336 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 408 (534)
Q Consensus 336 v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~ 408 (534)
++++|+.|+..|-. .-++|....- .-..++|+.-.. .++..-|.. .+|++.. -|.+.||.+..+
T Consensus 246 wSPdgd~lfaAt~d---avfrlw~e~q-~wt~erw~lgsg---rvqtacWspcGsfLLf~~--sgsp~lysl~f~ 311 (445)
T KOG2139|consen 246 WSPDGDVLFAATCD---AVFRLWQENQ-SWTKERWILGSG---RVQTACWSPCGSFLLFAC--SGSPRLYSLTFD 311 (445)
T ss_pred EcCCCCEEEEeccc---ceeeeehhcc-cceecceeccCC---ceeeeeecCCCCEEEEEE--cCCceEEEEeec
Confidence 89999998887763 2467763321 112345754433 588888875 4555555 477889988877
No 190
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=77.90 E-value=4 Score=42.12 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=38.9
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-CCccceeEEccCC-eEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALV 250 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-~~~~~~~~Ws~Dg-~l~ 250 (534)
-|.++++||||+|||++.- .-.++|++..+|+....-. .+....+.|+.+| .+.
T Consensus 454 pVysvafS~~g~ylAsGs~-----dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSL-----DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLG 509 (524)
T ss_pred ceEEEEecCCCcEEEecCC-----CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEE
Confidence 4677899999999999633 2359999999998876322 2222358998887 443
No 191
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=77.72 E-value=42 Score=39.85 Aligned_cols=114 Identities=24% Similarity=0.260 Sum_probs=60.9
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc----c-----c------CC--------ccceeEEccCCeEE
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----P-----L------VG--------VTASVEWAGNEALV 250 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~----~-----i------~~--------~~~~~~Ws~Dg~l~ 250 (534)
.++.+||||++|.++ |.. ...|+++|+++|..... . + .+ ...++++++||.+|
T Consensus 743 ~GIavspdG~~LYVA-Ds~---n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY 818 (1057)
T PLN02919 743 SGISLSPDLKELYIA-DSE---SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY 818 (1057)
T ss_pred cEEEEeCCCCEEEEE-ECC---CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE
Confidence 357899999987654 322 24799999987753210 0 0 00 11357888888654
Q ss_pred EEEECCCCCCceEEEeecCCCCCCceEeeeec----------CCce--EEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 251 YITMDEILRPDKAWLHKLEADQSNDICLYHEK----------DDIY--SLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 251 Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~----------d~~~--~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
.+-. ..++|..++..+.. ...+.... ...+ -.++.+++||+ ++|. +..++.|.++++++
T Consensus 819 VADs----~N~rIrviD~~tg~--v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa--Dt~Nn~Irvid~~~ 889 (1057)
T PLN02919 819 VADS----YNHKIKKLDPATKR--VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA--DTNNSLIRYLDLNK 889 (1057)
T ss_pred EEEC----CCCEEEEEECCCCe--EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE--ECCCCEEEEEECCC
Confidence 4322 13466666654331 11111100 0111 12567889997 4442 23345788888876
Q ss_pred CC
Q 009441 319 PE 320 (534)
Q Consensus 319 ~~ 320 (534)
..
T Consensus 890 ~~ 891 (1057)
T PLN02919 890 GE 891 (1057)
T ss_pred Cc
Confidence 53
No 192
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=77.64 E-value=35 Score=35.27 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=69.1
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec------cccCCccceeEEccCCeEEEEEECCCCCCceEEEee
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG------KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~------~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
..+.++|||+++..+-. ....|.++|..+..... ..+...-..+.+.+||..+|+..+... ...+...+
T Consensus 163 ~~~a~~p~g~~vyv~~~----~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~-~~~v~~id 237 (381)
T COG3391 163 TGVAVDPDGNKVYVTNS----DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG-SNNVLKID 237 (381)
T ss_pred ceEEECCCCCeEEEEec----CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC-CceEEEEe
Confidence 45789999998777652 23479999987766552 111222345889999977787754322 23555555
Q ss_pred cCCCCCCceEeeeecCCc-eEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 268 LEADQSNDICLYHEKDDI-YSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~-~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
..+... ......-.. .-..+..+|+|+++.+.... ...++++|.....
T Consensus 238 ~~~~~v---~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~~~ 286 (381)
T COG3391 238 TATGNV---TATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVIDGATDR 286 (381)
T ss_pred CCCceE---EEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEeCCCCc
Confidence 544321 111001111 22346789999998765333 5577888876643
No 193
>PRK13614 lipoprotein LpqB; Provisional
Probab=77.26 E-value=1.1e+02 Score=33.39 Aligned_cols=162 Identities=15% Similarity=0.074 Sum_probs=82.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCc-cceeEEccCCeEEEEEECCCCCCceEEEeec-C
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNEALVYITMDEILRPDKAWLHKL-E 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~-~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l-g 269 (534)
.+.+..+|+||+.+|+. +++ ..++++... |......+.+. .....|.++|.+ ++..+ ..+.+|.+.+- |
T Consensus 344 ~~~s~avS~~g~~~A~~---~~~-~~~l~~~~~--g~~~~~~~~g~~Lt~PS~d~~g~v-Wtv~~--g~~~~vv~~~~~g 414 (573)
T PRK13614 344 GPASPAESPVSQTVAFL---NGS-RTTLYTVSP--GQPARALTSGSTLTRPSFSPQDWV-WTAGP--GGNGRIVAYRPTG 414 (573)
T ss_pred cccceeecCCCceEEEe---cCC-CcEEEEecC--CCcceeeecCCCccCCcccCCCCE-EEeeC--CCCceEEEEecCC
Confidence 46678999999999997 232 256776654 32322233332 345788888733 44433 22335555332 3
Q ss_pred CCCC--CceE-e-eeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC--ceeEeeec-c---cceeEEE-ee
Q 009441 270 ADQS--NDIC-L-YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPR-V---VGVDTAA-SH 338 (534)
Q Consensus 270 t~~~--~d~l-v-~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~--~~~~l~~~-~---~g~~~~v-~~ 338 (534)
++.. .++. + -...+..-...+.+|+||-.+++.+.......|++.-..... .++.|... . .+....+ -.
T Consensus 415 ~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~ 494 (573)
T PRK13614 415 VAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWV 494 (573)
T ss_pred CcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEc
Confidence 3210 0110 1 111111224468899999998887755555556664332211 23333321 1 1111111 13
Q ss_pred eCCEEEEEEcCCCCCccEEEEEeCC
Q 009441 339 RGNHFFITRRSDELFNSELLACPVD 363 (534)
Q Consensus 339 ~g~~lyi~tn~~~~~~~~L~~~~~~ 363 (534)
.++.|.+++.. ...+-.+..+++.
T Consensus 495 ~~~sl~V~~~~-~~~~~~~~~v~v~ 518 (573)
T PRK13614 495 GDSTVVVTKAS-ATSNVVPELLSVD 518 (573)
T ss_pred CCCEEEEEecc-CCCcceEEEEEeC
Confidence 46788888864 2344455555553
No 194
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=76.83 E-value=76 Score=30.84 Aligned_cols=192 Identities=16% Similarity=0.157 Sum_probs=95.4
Q ss_pred EEEEEEECCC-CCEEEEEEcCCCCeEEEEEEEECCCCCeec--ccc----CCccceeEEccCC-eEEEEEECCCCCCceE
Q 009441 192 SVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPL----VGVTASVEWAGNE-ALVYITMDEILRPDKA 263 (534)
Q Consensus 192 ~l~~~~~SPD-G~~LA~~~d~~G~E~~~l~v~dl~tg~~~~--~~i----~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v 263 (534)
.+-.++|+|- |..||= +++.-.|+|+++.++.... ..+ ....-.++|+|.| .+.-.++|.+ ..|
T Consensus 16 r~W~~awhp~~g~ilAs-----cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t---~~I 87 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILAS-----CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT---VVI 87 (312)
T ss_pred cEEEEEeccCCceEEEe-----ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce---EEE
Confidence 4666789998 775552 3334689999988654321 122 2233459999999 5555555532 123
Q ss_pred EEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCcee---EeeecccceeEEEeeeC
Q 009441 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR---VLTPRVVGVDTAASHRG 340 (534)
Q Consensus 264 ~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~---~l~~~~~g~~~~v~~~g 340 (534)
| ++.+ +.-+-+-+.|..+. -.=.+++|++|+||+..+..+ .||+-..+...++. .|.+....+..-+-|--
T Consensus 88 w-~k~~-~efecv~~lEGHEn-EVK~Vaws~sG~~LATCSRDK---SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 88 W-KKED-GEFECVATLEGHEN-EVKCVAWSASGNYLATCSRDK---SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred e-ecCC-CceeEEeeeecccc-ceeEEEEcCCCCEEEEeeCCC---eEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 3 2322 11111223333221 122578999999998766543 46766665433232 33343322222222434
Q ss_pred CEEEEEEcCCCCCccEEEEEeCCCCCCceE----EecCCCCceeeeEEEeC-CEEEEEEeeCCeeEEEE
Q 009441 341 NHFFITRRSDELFNSELLACPVDNTSETTV----LIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITT 404 (534)
Q Consensus 341 ~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~----li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~ 404 (534)
..|++-...+ ..-++++-..+ ..| .+...+. .+=.+.+.+ +.-++...+++.-+|++
T Consensus 162 ~dlL~S~SYD--nTIk~~~~~~d----ddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 162 EDLLFSCSYD--NTIKVYRDEDD----DDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred cceeEEeccC--CeEEEEeecCC----CCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeee
Confidence 4566655553 23566654421 245 2222222 222222222 22344566677667776
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=76.53 E-value=16 Score=38.58 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=50.6
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccc-c-CCccceeEEccCCeEEEEEECCCCCCceEEEeecCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-L-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~-i-~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
|-.+.|||..+.|| .|.|.+...|||-. |..+-.. . +-...+++|.||. +|-+..- ..-|
T Consensus 189 iL~~~W~~~s~lI~-----sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~-~~~v~S~------nt~R----- 250 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIA-----SGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK-DYLLWSY------NTAR----- 250 (737)
T ss_pred EEEeecCcccccee-----ecCCceeEEeeccc-CcccccCChhccceeeeeecccc-ceeeeee------eeee-----
Confidence 34568999988887 47788999999965 4443221 1 2223459999994 4433211 1111
Q ss_pred CCCCceEeeeecCCceEEEEEEcCCCcEEEEEec
Q 009441 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASE 304 (534)
Q Consensus 271 ~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~ 304 (534)
|+.++.+-.+.++||+||..+.....
T Consensus 251 --------~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 251 --------FSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred --------ecCCCccceEEEEEcCCCceeecccc
Confidence 33233333445788888888765543
No 196
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=75.58 E-value=1.4e+02 Score=33.18 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=26.1
Q ss_pred CcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCC
Q 009441 189 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228 (534)
Q Consensus 189 ~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~ 228 (534)
+-+.+..+.+||||++||- |+.-.+|+|+||..-+
T Consensus 458 ~r~G~R~~~vSp~gqhLAs-----GDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLAS-----GDRGGNLRVYDLQELE 492 (1080)
T ss_pred cccceEEEEECCCcceecc-----cCccCceEEEEehhhh
Confidence 3456788899999999994 4444578888886543
No 197
>PLN00181 protein SPA1-RELATED; Provisional
Probab=75.32 E-value=1.6e+02 Score=33.79 Aligned_cols=111 Identities=20% Similarity=0.209 Sum_probs=63.3
Q ss_pred EEEEEECCC-CCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC---CccceeEEcc-CCeEEEEEECCCCCCceEEEee
Q 009441 193 VGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAG-NEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 193 l~~~~~SPD-G~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~---~~~~~~~Ws~-Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
+..+.|+|. +++||-+ +.+ .+|+|||+.+++.+.. +. +....++|+| |+.++.+...+ ..|..|+
T Consensus 535 v~~l~~~~~~~~~las~-~~D----g~v~lWd~~~~~~~~~-~~~H~~~V~~l~~~p~~~~~L~Sgs~D----g~v~iWd 604 (793)
T PLN00181 535 LSGICWNSYIKSQVASS-NFE----GVVQVWDVARSQLVTE-MKEHEKRVWSIDYSSADPTLLASGSDD----GSVKLWS 604 (793)
T ss_pred eeeEEeccCCCCEEEEE-eCC----CeEEEEECCCCeEEEE-ecCCCCCEEEEEEcCCCCCEEEEEcCC----CEEEEEE
Confidence 456677764 5665543 223 4799999999876542 22 2234589986 55666666332 3577777
Q ss_pred cCCCCCCceEeeeecCCceEEEEEE-cCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQA-SESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~-S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
+.+.. ....+.... -...+.+ +++|.+++..+. ...|++.|+....
T Consensus 605 ~~~~~--~~~~~~~~~--~v~~v~~~~~~g~~latgs~---dg~I~iwD~~~~~ 651 (793)
T PLN00181 605 INQGV--SIGTIKTKA--NICCVQFPSESGRSLAFGSA---DHKVYYYDLRNPK 651 (793)
T ss_pred CCCCc--EEEEEecCC--CeEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCC
Confidence 76542 222222211 1223455 567888766443 2467888876543
No 198
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=74.62 E-value=11 Score=27.99 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCcEEEEEEEEcCCCceecEEEEEeCC-CCCCCCCCcEEEEEcCCCCcCc
Q 009441 482 NNYFTERKWASASDGTQIPICIVYRKN-LVKLDGSDPLLLYGYGSYEVIF 530 (534)
Q Consensus 482 ~~~~~e~v~~~S~DG~~VP~~lv~~k~-~~~~~~~~P~lL~gYGgyg~~~ 530 (534)
..|.+|...+++.||--+-++=+.++. .....++.|.+|..||=.+.|.
T Consensus 8 ~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~ 57 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSD 57 (63)
T ss_dssp TT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GG
T ss_pred cCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChH
Confidence 368899999999999988887666655 2134567899999999777653
No 199
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.12 E-value=4.6 Score=41.00 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=36.8
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCC-ccceeEEccCC-eEE
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVG-VTASVEWAGNE-ALV 250 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~-~~~~~~Ws~Dg-~l~ 250 (534)
.....+||||+|+|-+.. ...++||++.+|+.... .-.+ ....++|.+-| +++
T Consensus 390 wtrvvfSpd~~YvaAGS~-----dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSA-----DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred cceeEECCCCceeeeccC-----CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 566789999999997533 35799999999976431 1122 22348999888 553
No 200
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=71.43 E-value=58 Score=34.04 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=81.1
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
+..+.+-||+..+.++ +|+ ...|.-+|+.+|+.+.+ .+. ....+.|.++|.-|.++.|+. ..+||-+.++
T Consensus 302 ~~cvkf~pd~~n~fl~---G~s-d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdk--s~riWe~~~~ 374 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLV---GGS-DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDK--SVRIWENRIP 374 (503)
T ss_pred ceeeecCCCCCcEEEE---ecC-CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCc--cEEEEEcCCC
Confidence 4556788888444443 233 24688999999998764 222 234588999994444554543 3466666555
Q ss_pred CCCCCceEeeeecCCceEE-EEEEcCCCcEEEEEecCcceeEEEEEeCCCCCcee-Eeeecccce-------eEEEeeeC
Q 009441 270 ADQSNDICLYHEKDDIYSL-GLQASESKKFLFIASESKITRFVFYLDVSKPEELR-VLTPRVVGV-------DTAASHRG 340 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v-~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~-~l~~~~~g~-------~~~v~~~g 340 (534)
-+.+. .++ ...+.+ .+...|.++|++-++.. +.+++..+..+ ++ ...++..|. ...++++|
T Consensus 375 v~ik~--i~~---~~~hsmP~~~~~P~~~~~~aQs~d---N~i~ifs~~~~--~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 375 VPIKN--IAD---PEMHTMPCLTLHPNGKWFAAQSMD---NYIAIFSTVPP--FRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred ccchh--hcc---hhhccCcceecCCCCCeehhhccC---ceEEEEecccc--cccCHhhhhcceeccCceeeEEEcCCC
Confidence 43221 111 112322 36778999998765543 33444443221 11 111222332 22367887
Q ss_pred CEEEEEEcCCCCCccEEEEEeCCC
Q 009441 341 NHFFITRRSDELFNSELLACPVDN 364 (534)
Q Consensus 341 ~~lyi~tn~~~~~~~~L~~~~~~~ 364 (534)
+.|. + |...+++...|..+
T Consensus 445 ~~l~--S---GdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 445 RTLC--S---GDSDGKVNFWDWKT 463 (503)
T ss_pred CeEE--e---ecCCccEEEeechh
Confidence 7553 2 23457888887654
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=71.27 E-value=64 Score=36.13 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=60.3
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEE-CC-CCCeecc-ccCC---ccceeEEccCCeEEEEEECCCCCCceEEEe
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVID-IE-TGTPVGK-PLVG---VTASVEWAGNEALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~d-l~-tg~~~~~-~i~~---~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~ 266 (534)
+..+++||+++++|-+-+. | +|+|+. .. .++...- .+.. -...++|+.||..+|+. ++-..+.+|
T Consensus 208 ~t~~~~spn~~~~Aa~d~d-G----rI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG----G~E~VLv~W 278 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD-G----RILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG----GREGVLVLW 278 (792)
T ss_pred ceeEEeccccceEEEeccC-C----cEEEEeccccccccccceEEEecccccceeEEecCCceEeec----ccceEEEEE
Confidence 5678999999999987664 4 355554 43 2222111 1211 13458899999666765 233456788
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeC
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~ 316 (534)
.++|+. .+.+=.= ..-...+.+|+|+....+... .+.+.++.+
T Consensus 279 q~~T~~--kqfLPRL--gs~I~~i~vS~ds~~~sl~~~---DNqI~li~~ 321 (792)
T KOG1963|consen 279 QLETGK--KQFLPRL--GSPILHIVVSPDSDLYSLVLE---DNQIHLIKA 321 (792)
T ss_pred eecCCC--ccccccc--CCeeEEEEEcCCCCeEEEEec---CceEEEEec
Confidence 888873 2333110 112345667777776544333 234444443
No 202
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=70.88 E-value=23 Score=39.46 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=54.3
Q ss_pred CeEEEEEEEECCCCCeecc--ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEE
Q 009441 214 DEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 290 (534)
Q Consensus 214 ~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~ 290 (534)
.+.+.|+|+|+.|.+.+.+ ...+....+.||||| ++.-...|. .|..|++-|+.-=|-+++. ++ ...+
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----tIr~wDlpt~~lID~~~vd--~~--~~sl 623 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----TIRTWDLPTGTLIDGLLVD--SP--CTSL 623 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----cEEEEeccCcceeeeEecC--Cc--ceee
Confidence 4568899999998877653 112223458999999 776666553 5777788776444444443 22 3346
Q ss_pred EEcCCCcEEEEEec
Q 009441 291 QASESKKFLFIASE 304 (534)
Q Consensus 291 ~~S~Dg~~l~i~~~ 304 (534)
..||.|.||+....
T Consensus 624 s~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 624 SFSPNGDFLATVHV 637 (910)
T ss_pred EECCCCCEEEEEEe
Confidence 78999999876543
No 203
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=70.08 E-value=1.1e+02 Score=29.73 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=67.2
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCC-------CCeecccc--C-CccceeEEccCC-eEEEEEECCCCC
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-------GTPVGKPL--V-GVTASVEWAGNE-ALVYITMDEILR 259 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~t-------g~~~~~~i--~-~~~~~~~Ws~Dg-~l~Y~~~d~~~r 259 (534)
..+..+.+|++|.++++..|..=.-...+.++|+.. .+++. .| + .....+.|.|-+ .|++--.
T Consensus 94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~-kI~t~~skit~a~Wg~l~~~ii~Ghe----- 167 (327)
T KOG0643|consen 94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL-KIPTPDSKITSALWGPLGETIIAGHE----- 167 (327)
T ss_pred CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE-EecCCccceeeeeecccCCEEEEecC-----
Confidence 467888999999999999998655567888998873 23221 12 1 122347899988 5544322
Q ss_pred CceEEEeecCCCCCCceEeeeec-CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 260 PDKAWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 260 ~~~v~~~~lgt~~~~d~lv~~e~-d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
...|-.+++.++. ++|=... ...-.-++..|+|..|. |++...+++ .++|..+
T Consensus 168 ~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~F-iT~s~Dtta--kl~D~~t 221 (327)
T KOG0643|consen 168 DGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYF-ITGSKDTTA--KLVDVRT 221 (327)
T ss_pred CCcEEEEEcccCc---eeeechhhhccccccccccCCcceE-EecccCccc--eeeeccc
Confidence 1256666766542 2221110 11112247789999885 444333333 3445444
No 204
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=69.95 E-value=75 Score=32.30 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=66.3
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC-ccceeEEccCCeEEEEEECCCCCCceEEEeecCC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~-~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt 270 (534)
.+.++.|++ .-++|+++-+ .+|+++|+++|........+ .+..+..++...++-.... .| .+..|+-.+
T Consensus 262 ~Vs~V~w~d--~~v~yS~SwD----HTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss--dr--~irl~DPR~ 331 (423)
T KOG0313|consen 262 PVSSVVWSD--ATVIYSVSWD----HTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS--DR--HIRLWDPRT 331 (423)
T ss_pred ceeeEEEcC--CCceEeeccc----ceEEEEEeecccceeeeecCcceeEeecccccceeeecCC--CC--ceeecCCCC
Confidence 578889988 5678876643 68999999999876532233 2444677776655544321 12 233444433
Q ss_pred CCCCceEee--eecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEe
Q 009441 271 DQSNDICLY--HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLD 315 (534)
Q Consensus 271 ~~~~d~lv~--~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d 315 (534)
+... .+.+ -. ...|.-.+.++|-..|+++...-.++..+|=++
T Consensus 332 ~~gs-~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 332 GDGS-VVSQSLIG-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CCCc-eeEEeeec-chhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 3211 2222 11 122433578999999998876655566666444
No 205
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=69.68 E-value=2.5e+02 Score=33.54 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=62.7
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccc--------cC----------CccceeEEccCCeEEEEEE
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--------LV----------GVTASVEWAGNEALVYITM 254 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~--------i~----------~~~~~~~Ws~Dg~l~Y~~~ 254 (534)
..++.++++|+.|.+ .|..+ ..|+++|+.++...... .. +.-.+++++++++.+|++.
T Consensus 626 P~GIavd~~gn~LYV-aDt~n---~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLLYV-ADTEN---HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEEEE-EeCCC---ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 355678888776544 45433 36888888776542110 00 0113478888664445543
Q ss_pred CCCCCCceEEEeecCCCCCCceEeeeec------------CCce--EEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 255 DEILRPDKAWLHKLEADQSNDICLYHEK------------DDIY--SLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 255 d~~~r~~~v~~~~lgt~~~~d~lv~~e~------------d~~~--~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
. ..++|+.++..++. ..+|... ...+ -.++++++||++|++... .++.|++++++++.
T Consensus 702 ~---~~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 702 A---GQHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGG 773 (1057)
T ss_pred C---CCCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCc
Confidence 2 23567777764431 1222110 0011 124778999998877432 34578888876543
No 206
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=69.32 E-value=9 Score=40.16 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=32.4
Q ss_pred CcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCc
Q 009441 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEV 528 (534)
Q Consensus 483 ~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~ 528 (534)
.+..|++.++..||..||+++..|++ +++.|+||. +||++.
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~----~~~~P~Vli-~gG~~~ 205 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG----DGPFPTVLV-CGGLDS 205 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC----CCCccEEEE-eCCccc
Confidence 45689999999999999999998873 257899885 566654
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=68.59 E-value=41 Score=33.36 Aligned_cols=132 Identities=20% Similarity=0.294 Sum_probs=72.4
Q ss_pred CceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCC----CeeccccCCccceeEEccCC-e
Q 009441 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG----TPVGKPLVGVTASVEWAGNE-A 248 (534)
Q Consensus 174 ~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg----~~~~~~i~~~~~~~~Ws~Dg-~ 248 (534)
+.-|||-.|.- ...+.|||.++++|.+ +|.....+.-+.-+.. +.+..+|......+.|.|++ -
T Consensus 92 ptlvLlRiNrA--------At~V~WsP~enkFAVg---Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 92 PTLVLLRINRA--------ATCVKWSPKENKFAVG---SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred cceeEEEeccc--------eeeEeecCcCceEEec---cCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 34566666643 3457999999999986 3443333333332221 11223444444568999998 4
Q ss_pred EEEEEECCCCCCceEEEeecCCCCCC---------ceEeeee-cCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 249 LVYITMDEILRPDKAWLHKLEADQSN---------DICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 249 l~Y~~~d~~~r~~~v~~~~lgt~~~~---------d~lv~~e-~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
+.-.+.|-.-|-+..|...+.+.++. .+++.|- ..+++..++.+|++|..|.....+ +-+.+.|...
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd---s~v~~~da~~ 237 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD---STVSFVDAAG 237 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC---CceEEeecCC
Confidence 44444454445455566555443211 1122222 245566678889999888765433 2345555555
Q ss_pred C
Q 009441 319 P 319 (534)
Q Consensus 319 ~ 319 (534)
+
T Consensus 238 p 238 (361)
T KOG1523|consen 238 P 238 (361)
T ss_pred C
Confidence 4
No 208
>COG4099 Predicted peptidase [General function prediction only]
Probab=68.53 E-value=6.7 Score=38.45 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=33.2
Q ss_pred cEEEEEEEEcCCCceecEEEEEeCCCCCCCCCC-cEEEEEcCCCC
Q 009441 484 YFTERKWASASDGTQIPICIVYRKNLVKLDGSD-PLLLYGYGSYE 527 (534)
Q Consensus 484 ~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~-P~lL~gYGgyg 527 (534)
+..-+++=+ +-|.++++-|+-|||. .+++++ |++|+.|||=.
T Consensus 160 F~a~~f~d~-~tgneLkYrly~Pkdy-~pdkky~PLvlfLHgagq 202 (387)
T COG4099 160 FQAVEFYDE-STGNELKYRLYTPKDY-APDKKYYPLVLFLHGAGQ 202 (387)
T ss_pred hhheEeecc-ccCceeeEEEeccccc-CCCCccccEEEEEecCCC
Confidence 333444333 4789999999999999 899998 99999999843
No 209
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=68.00 E-value=1.1e+02 Score=28.66 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=60.7
Q ss_pred eeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCccccc
Q 009441 338 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSL 417 (534)
Q Consensus 338 ~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~ 417 (534)
..++.+|+.+. ...|+.++..++. ..|-...... ........++.+++.. .++ +|+.++..+ |+.+...
T Consensus 34 ~~~~~v~~~~~-----~~~l~~~d~~tG~-~~W~~~~~~~-~~~~~~~~~~~v~v~~-~~~--~l~~~d~~t-G~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVASG-----DGNLYALDAKTGK-VLWRFDLPGP-ISGAPVVDGGRVYVGT-SDG--SLYALDAKT-GKVLWSI 102 (238)
T ss_dssp EETTEEEEEET-----TSEEEEEETTTSE-EEEEEECSSC-GGSGEEEETTEEEEEE-TTS--EEEEEETTT-SCEEEEE
T ss_pred EeCCEEEEEcC-----CCEEEEEECCCCC-EEEEeecccc-ccceeeeccccccccc-cee--eeEecccCC-cceeeee
Confidence 46888888753 3679999986643 4573332211 1122455677887766 334 789999765 7743210
Q ss_pred CCCceeee-cCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEE
Q 009441 418 QGGKSVEF-IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 468 (534)
Q Consensus 418 ~~~~~i~l-p~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~ 468 (534)
.... +... ..........++.+++... .+.++.+|+++|+..
T Consensus 103 ----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 103 ----YLTSSPPAG-VRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLL 145 (238)
T ss_dssp ----EE-SSCTCS-TB--SEEEEETTEEEEEET----CSEEEEEETTTTEEE
T ss_pred ----ccccccccc-cccccCceEecCEEEEEec----cCcEEEEecCCCcEE
Confidence 0000 1100 0011112223455655544 688999999999863
No 210
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=67.61 E-value=2.1e+02 Score=31.96 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=72.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECC-----CC---Ceec------cccCCccceeEEccCCeEEEEEE-CC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-----TG---TPVG------KPLVGVTASVEWAGNEALVYITM-DE 256 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~-----tg---~~~~------~~i~~~~~~~~Ws~Dg~l~Y~~~-d~ 256 (534)
.|..++.+|||+..+-+. ...++.+||.+ .| +.+. ..+++-.-.++.||||.++-++. |.
T Consensus 456 aIWsi~~~pD~~g~vT~s-----aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGS-----ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred ceeeeeecCCCCceEEec-----CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 578889999999887542 22455555522 12 1111 12444334488999995555553 32
Q ss_pred CCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeE-E
Q 009441 257 ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-A 335 (534)
Q Consensus 257 ~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~-~ 335 (534)
.-+||..+ +- +-=.-+|+..=|- +.+.+|+|++.|+-.+.+ -+-.+|=+|..+=. +.+...++.+.+ .
T Consensus 531 ---TVkVyflD--tl-KFflsLYGHkLPV--~smDIS~DSklivTgSAD-KnVKiWGLdFGDCH--KS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 531 ---TVKVYFLD--TL-KFFLSLYGHKLPV--LSMDISPDSKLIVTGSAD-KNVKIWGLDFGDCH--KSFFAHDDSVMSVQ 599 (888)
T ss_pred ---eEEEEEec--ce-eeeeeecccccce--eEEeccCCcCeEEeccCC-CceEEeccccchhh--hhhhcccCceeEEE
Confidence 23455433 21 1112344433332 245678999976543333 23467766654321 234444444222 2
Q ss_pred EeeeCCEEEEEEcC
Q 009441 336 ASHRGNHFFITRRS 349 (534)
Q Consensus 336 v~~~g~~lyi~tn~ 349 (534)
+-| ..+++|.+.+
T Consensus 600 F~P-~~~~FFt~gK 612 (888)
T KOG0306|consen 600 FLP-KTHLFFTCGK 612 (888)
T ss_pred Ecc-cceeEEEecC
Confidence 334 4566666654
No 211
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=67.28 E-value=1.6e+02 Score=30.42 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=68.8
Q ss_pred eCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCcccccC
Q 009441 339 RGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQ 418 (534)
Q Consensus 339 ~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~ 418 (534)
.++.+|+.+.. +.|+.++..+++ ..|-.+.. ....+.+.++.||+... +| +|+.++..+ |+.+...
T Consensus 255 ~~~~vy~~~~~-----g~l~ald~~tG~-~~W~~~~~---~~~~~~~~~~~vy~~~~-~g--~l~ald~~t-G~~~W~~- 320 (394)
T PRK11138 255 VGGVVYALAYN-----GNLVALDLRSGQ-IVWKREYG---SVNDFAVDGGRIYLVDQ-ND--RVYALDTRG-GVELWSQ- 320 (394)
T ss_pred ECCEEEEEEcC-----CeEEEEECCCCC-EEEeecCC---CccCcEEECCEEEEEcC-CC--eEEEEECCC-CcEEEcc-
Confidence 47888886642 578999987643 45722211 12234556778887654 33 588888875 6532110
Q ss_pred CCceeeecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEEEcccc-CCCCCCC-cEEEEEEEEcCCC
Q 009441 419 GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVL-GGFDTNN-YFTERKWASASDG 496 (534)
Q Consensus 419 ~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~~~~~~-~~~d~~~-~~~e~v~~~S~DG 496 (534)
. .+... ... +....++.+++.- .-+.++.+|.++|+..... +.. .++.... +.-.++.+.+.||
T Consensus 321 --~--~~~~~--~~~--sp~v~~g~l~v~~----~~G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~t~~G 386 (394)
T PRK11138 321 --S--DLLHR--LLT--APVLYNGYLVVGD----SEGYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQARDG 386 (394)
T ss_pred --c--ccCCC--ccc--CCEEECCEEEEEe----CCCEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEEeCCc
Confidence 0 01010 011 1111234454432 2367899999999853222 211 1122222 2336788888888
Q ss_pred ce
Q 009441 497 TQ 498 (534)
Q Consensus 497 ~~ 498 (534)
.-
T Consensus 387 ~l 388 (394)
T PRK11138 387 TV 388 (394)
T ss_pred eE
Confidence 53
No 212
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=67.21 E-value=18 Score=24.48 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=23.1
Q ss_pred EEEEEECCCC---CEEEEEEcCCCCeEEEEEEEECCCC
Q 009441 193 VGCFQVSPDN---KLVAYAEDTKGDEIYTVYVIDIETG 227 (534)
Q Consensus 193 l~~~~~SPDG---~~LA~~~d~~G~E~~~l~v~dl~tg 227 (534)
+..+++||+. .+|||+.+. ..++|.|+.++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~-----g~vhi~D~R~~ 35 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQ-----GRVHIVDTRSN 35 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccC-----CeEEEEEcccC
Confidence 5678899854 599999874 37999998764
No 213
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.05 E-value=1.7e+02 Score=30.72 Aligned_cols=224 Identities=11% Similarity=0.076 Sum_probs=110.3
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEeec
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~l 268 (534)
+.+..+--||++||. |+|...+.|+|+.+...+.. +.. -.....|+|++ .++-+..|+ ..+.++++
T Consensus 71 v~s~~fR~DG~Llaa-----GD~sG~V~vfD~k~r~iLR~-~~ah~apv~~~~f~~~d~t~l~s~sDd----~v~k~~d~ 140 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAA-----GDESGHVKVFDMKSRVILRQ-LYAHQAPVHVTKFSPQDNTMLVSGSDD----KVVKYWDL 140 (487)
T ss_pred eeEEEeecCCeEEEc-----cCCcCcEEEeccccHHHHHH-HhhccCceeEEEecccCCeEEEecCCC----ceEEEEEc
Confidence 445567789999996 77778999999776444431 111 12336788887 666655443 24445566
Q ss_pred CCCCCCceEeeeec-CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccc--eeEEEeeeCCEEEE
Q 009441 269 EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--VDTAASHRGNHFFI 345 (534)
Q Consensus 269 gt~~~~d~lv~~e~-d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g--~~~~v~~~g~~lyi 345 (534)
.+.. + .++.. ..+|.-..+++|-...|+++.+-...-.+|=....+. + +.+-..| ++.-+---++.++
T Consensus 141 s~a~---v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~--v~elnhg~pVe~vl~lpsgs~i- 211 (487)
T KOG0310|consen 141 STAY---V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--R--VVELNHGCPVESVLALPSGSLI- 211 (487)
T ss_pred CCcE---E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--e--eEEecCCCceeeEEEcCCCCEE-
Confidence 6542 2 43332 2334435778898888887544333334444433331 1 1111111 1111111122332
Q ss_pred EEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC-CEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceee
Q 009441 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE 424 (534)
Q Consensus 346 ~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~ 424 (534)
.+. +++..+++ |+-.+...-.... +....+..+.+.. ++-++...-|+ ++.+|+.. ..++ ...+.
T Consensus 212 asA--gGn~vkVW--Dl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~--~VKVfd~t--~~Kv-----v~s~~ 277 (487)
T KOG0310|consen 212 ASA--GGNSVKVW--DLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDR--HVKVFDTT--NYKV-----VHSWK 277 (487)
T ss_pred EEc--CCCeEEEE--EecCCceehhhhh-cccceEEEEEeecCCceEeeccccc--ceEEEEcc--ceEE-----EEeee
Confidence 232 34555554 3332221100111 1122455566544 34555555556 45566644 2221 13456
Q ss_pred ecCceeeEeCCCCccCccEEEEEeccCC
Q 009441 425 FIDPVYSIDPSESVFSSRILRFHYSSLR 452 (534)
Q Consensus 425 lp~~~~~i~~~~~~~~~~~l~~~~sS~~ 452 (534)
+|.+.-++. ...++.++++..++-+
T Consensus 278 ~~~pvLsia---vs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 278 YPGPVLSIA---VSPDDQTVVIGMSNGL 302 (487)
T ss_pred cccceeeEE---ecCCCceEEEecccce
Confidence 676543333 2335677777766543
No 214
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.83 E-value=1.4e+02 Score=29.58 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=70.6
Q ss_pred CceEEeecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCc--cceeEEccCCeEE
Q 009441 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEWAGNEALV 250 (534)
Q Consensus 174 ~eevllD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~--~~~~~Ws~Dg~l~ 250 (534)
+-++.+|-..+.. -...+++..|+||-+.|--+.+ +-.+|.-++.+ |+.+.. ++.++ ...++|..+|.|.
T Consensus 71 ~y~~~i~akpi~g--~~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~fv 143 (316)
T COG3204 71 EYRARIDAKPILG--ETANVSSLTYNPDTRTLFAVTN----KPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQFV 143 (316)
T ss_pred CceEEEecccccc--ccccccceeeCCCcceEEEecC----CCceEEEEecC-CceEEEecccccCChhHeEEecCCEEE
Confidence 4456666332221 1234888999999998765543 23466666654 666552 34443 3458898887555
Q ss_pred EEEECCCCCCceEEEeecCCCC----CCc-eEeeeec---CCceEEEEEEcCCCcEEEEEecCcceeEEEEEeC
Q 009441 251 YITMDEILRPDKAWLHKLEADQ----SND-ICLYHEK---DDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (534)
Q Consensus 251 Y~~~d~~~r~~~v~~~~lgt~~----~~d-~lv~~e~---d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~ 316 (534)
.+. .|..++|.+.+..+. ..+ .+-.+.. |.+| -++++++..+.+++.- .+.-..||.+..
T Consensus 144 i~d----ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf-EGlA~d~~~~~l~~aK-Er~P~~I~~~~~ 211 (316)
T COG3204 144 IVD----ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF-EGLAWDPVDHRLFVAK-ERNPIGIFEVTQ 211 (316)
T ss_pred EEe----hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc-eeeecCCCCceEEEEE-ccCCcEEEEEec
Confidence 443 244567766654321 011 1111221 2233 3678888887776633 333345666653
No 215
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=66.55 E-value=35 Score=37.46 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=45.8
Q ss_pred CceEEeecchhcCCC----CcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCc--cceeEEccCC
Q 009441 174 PEHLILDENVKAEGR----GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--TASVEWAGNE 247 (534)
Q Consensus 174 ~eevllD~n~~a~~~----~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~--~~~~~Ws~Dg 247 (534)
-..||+|+..-...+ .-..+..+++|+||||+|-+.. | ....++||+++.-..+.+-.+.. ..-++|+|.+
T Consensus 58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEc--G-~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~ 134 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGEC--G-RTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGN 134 (1080)
T ss_pred cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEeccc--C-CCccceeeeeccccchhhhhhccccceeeeecCCC
Confidence 345667665432211 1125778899999999997654 2 24679999998876554433322 2458899988
Q ss_pred e
Q 009441 248 A 248 (534)
Q Consensus 248 ~ 248 (534)
.
T Consensus 135 k 135 (1080)
T KOG1408|consen 135 K 135 (1080)
T ss_pred c
Confidence 3
No 216
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=66.21 E-value=2e+02 Score=31.23 Aligned_cols=160 Identities=13% Similarity=0.020 Sum_probs=79.4
Q ss_pred eCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEec---CCCCc-eeeeEEEeCCEEEEEEeeC---CeeEEEEEECCCCC
Q 009441 339 RGNHFFITRRSDELFNSELLACPVDNTSETTVLIP---HRESV-KLQDIQLFIDHLAVYEREG---GLQKITTYRLPAVG 411 (534)
Q Consensus 339 ~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~---~~~~~-~l~~~~~~~~~lv~~~~~~---g~~~l~~~~l~~~g 411 (534)
.++.+|+.+. .++|+.+|..+++ ..|-.. ..... ......+.++.|++..... ..-.|+.++..+ |
T Consensus 119 ~~~~v~v~t~-----dg~l~ALDa~TGk-~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~T-G 191 (527)
T TIGR03075 119 YDGKVFFGTL-----DARLVALDAKTGK-VVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKT-G 191 (527)
T ss_pred ECCEEEEEcC-----CCEEEEEECCCCC-EEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCC-C
Confidence 4677877553 2579999987644 356111 11011 1123344567666654311 123677788776 6
Q ss_pred CcccccCCC-ce----------e-e------ecC-----ceeeEeC-CCCccCccEEEEEecc------CCCCC------
Q 009441 412 EPLKSLQGG-KS----------V-E------FID-----PVYSIDP-SESVFSSRILRFHYSS------LRTPP------ 455 (534)
Q Consensus 412 ~~~~~~~~~-~~----------i-~------lp~-----~~~~i~~-~~~~~~~~~l~~~~sS------~~~P~------ 455 (534)
+.+...... .. + . .+. .++.+.. .+.|.+.+.+++...+ -..|+
T Consensus 192 ~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~ 271 (527)
T TIGR03075 192 KLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTS 271 (527)
T ss_pred ceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccce
Confidence 644211100 00 0 0 000 0112221 3445556677777644 12222
Q ss_pred eEEEEECCCCcEEEEEEccccCCCCCCCcE--EEEEEEE-cCCCceecEEEEEeCC
Q 009441 456 SVYDYDMDMGISVLKKIETVLGGFDTNNYF--TERKWAS-ASDGTQIPICIVYRKN 508 (534)
Q Consensus 456 ~~y~~d~~~~~~~~~~~~~~~~~~d~~~~~--~e~v~~~-S~DG~~VP~~lv~~k~ 508 (534)
.++-+|++||+.+...+. . ..|.-+|. ...+-+. -.||.++|+.+.-.|+
T Consensus 272 s~vAld~~TG~~~W~~Q~-~--~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~ 324 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQT-T--PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRN 324 (527)
T ss_pred eEEEEccccCCEEEeeeC-C--CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCC
Confidence 578899999998766553 3 12322331 2222222 2588888888777664
No 217
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=65.83 E-value=2.1e+02 Score=31.37 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=44.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC----ccceeEEccCCeEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG----VTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~----~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~ 267 (534)
.|.+++.|.+.+.||.+... | .|-||++..+=.+...|.+ ...+++|++.+++|=...+ ..|..++
T Consensus 27 ~I~slA~s~kS~~lAvsRt~-g----~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s-----g~i~EwD 96 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTD-G----NIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS-----GSITEWD 96 (691)
T ss_pred ceEEEEEeccCCceeeeccC-C----cEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCC-----ceEEEEe
Confidence 46678899999999998664 3 4778888876443323322 2456999966677665432 2455555
Q ss_pred cCC
Q 009441 268 LEA 270 (534)
Q Consensus 268 lgt 270 (534)
+-+
T Consensus 97 l~~ 99 (691)
T KOG2048|consen 97 LHT 99 (691)
T ss_pred ccc
Confidence 544
No 218
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=64.95 E-value=1.5e+02 Score=29.34 Aligned_cols=246 Identities=11% Similarity=0.052 Sum_probs=118.7
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~ 267 (534)
.|.++.+|+||.+|+-..+ .-+|+++|..+|+.+. .|.- ...-+.|.... .+.|.+.. ....|.+..
T Consensus 16 ~i~sl~fs~~G~~litss~-----dDsl~LYd~~~g~~~~-ti~skkyG~~~~~Fth~~~~~i~sStk---~d~tIryLs 86 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSE-----DDSLRLYDSLSGKQVK-TINSKKYGVDLACFTHHSNTVIHSSTK---EDDTIRYLS 86 (311)
T ss_pred ceeEEEecCCCCEEEEecC-----CCeEEEEEcCCCceee-EeecccccccEEEEecCCceEEEccCC---CCCceEEEE
Confidence 5778899999999987433 2379999999998765 3321 12336676555 77777642 123455555
Q ss_pred cCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEEEeeeCCEEEEEE
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITR 347 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~v~~~g~~lyi~t 347 (534)
+-+. +=.-.|.+. ..-..++..+|-+.. ++.++... .|++-|+...+ .+-+..-.......+++.|--|.+..
T Consensus 87 l~dN--kylRYF~GH-~~~V~sL~~sP~~d~-FlS~S~D~--tvrLWDlR~~~-cqg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 87 LHDN--KYLRYFPGH-KKRVNSLSVSPKDDT-FLSSSLDK--TVRLWDLRVKK-CQGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred eecC--ceEEEcCCC-CceEEEEEecCCCCe-EEecccCC--eEEeeEecCCC-CceEEecCCCcceeECCCCcEEEEec
Confidence 5443 112233321 223345777886643 44333322 34455555433 22122111112333556554443333
Q ss_pred cCCCCCccEEEEEeCCCCCCce---EEecCCCCceeeeEEEeC--CEEEEEEeeCCeeEEEEEECCCCCCcccccCCCce
Q 009441 348 RSDELFNSELLACPVDNTSETT---VLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS 422 (534)
Q Consensus 348 n~~~~~~~~L~~~~~~~~~~~~---~li~~~~~~~l~~~~~~~--~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~ 422 (534)
+ .. .|-..|+...+.+. ..+.........++...+ +.|++....+ .+++++.-. |.... .
T Consensus 160 ~---~~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~-G~~~~------t 224 (311)
T KOG1446|consen 160 G---SE--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFD-GTVKS------T 224 (311)
T ss_pred C---CC--eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccC-CcEee------e
Confidence 2 22 33334444322111 133323333456666654 4666665432 455665533 65322 1
Q ss_pred eeecCceeeEeC-CCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEEE
Q 009441 423 VEFIDPVYSIDP-SESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI 472 (534)
Q Consensus 423 i~lp~~~~~i~~-~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~~ 472 (534)
.........+++ ....++++.+. +-+. -+++..|++++|+......
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl-~gs~---dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVL-SGSD---DGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEE-EecC---CCcEEEEEcCCCcEeeEec
Confidence 211111110111 12234554333 2222 3678899999988655544
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=64.17 E-value=14 Score=36.45 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=29.4
Q ss_pred cCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCC
Q 009441 185 AEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG 227 (534)
Q Consensus 185 a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg 227 (534)
..|.+...|-.+++|||+.+||.+.|. .+|+|+.+...
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdK-----gTlHiF~l~~~ 258 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDK-----GTLHIFSLRDT 258 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCC-----CeEEEEEeecC
Confidence 334556788899999999999999774 37888877643
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=63.47 E-value=14 Score=39.99 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=40.0
Q ss_pred cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeE
Q 009441 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEAL 249 (534)
Q Consensus 190 ~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l 249 (534)
+..|..+.+-|||..|..+.+ ..++|+|+..|..+. ++.+ ...-++|+.||..
T Consensus 12 ~hci~d~afkPDGsqL~lAAg------~rlliyD~ndG~llq-tLKgHKDtVycVAys~dGkr 67 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAAG------SRLLVYDTSDGTLLQ-PLKGHKDTVYCVAYAKDGKR 67 (1081)
T ss_pred ccchheeEECCCCceEEEecC------CEEEEEeCCCccccc-ccccccceEEEEEEccCCce
Confidence 336778899999999998754 369999999998765 3443 3456899999833
No 221
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=61.32 E-value=8.4 Score=38.49 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=26.6
Q ss_pred EcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCC
Q 009441 492 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527 (534)
Q Consensus 492 ~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg 527 (534)
...+|..||+.++.| +. +.+++.|+|||.|||.=
T Consensus 57 ~~~~~~~~~~~~y~p-~~-~~~~~~p~vly~HGGg~ 90 (312)
T COG0657 57 AGPSGDGVPVRVYRP-DR-KAAATAPVVLYLHGGGW 90 (312)
T ss_pred cCCCCCceeEEEECC-CC-CCCCCCcEEEEEeCCee
Confidence 455778899998888 43 45578999999999963
No 222
>PLN02442 S-formylglutathione hydrolase
Probab=61.32 E-value=16 Score=36.00 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=34.2
Q ss_pred CcEEEEEEEEcC-CCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCc
Q 009441 483 NYFTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEV 528 (534)
Q Consensus 483 ~~~~e~v~~~S~-DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~ 528 (534)
...++++++.|+ =|.++++.|+.|+. ..+++.|+|++.||..|.
T Consensus 15 ~~~~~~~~~~s~~l~~~~~~~vy~P~~--~~~~~~Pvv~~lHG~~~~ 59 (283)
T PLN02442 15 GGFNRRYKHFSSTLGCSMTFSVYFPPA--SDSGKVPVLYWLSGLTCT 59 (283)
T ss_pred CCEEEEEEEeccccCCceEEEEEcCCc--ccCCCCCEEEEecCCCcC
Confidence 345677777774 68999999999984 345689999999997664
No 223
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=61.31 E-value=1.7e+02 Score=28.60 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=98.6
Q ss_pred EEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCC-cc-ceeEEccCCeEEEEEECCCCCCceEEEeecCCC
Q 009441 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG-VT-ASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~-~~-~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~ 271 (534)
++.+..||. +-.+.+.-.+..|+.+|++||+.+.. .++. .| .+++-..| .+|-.+ ++....+.++..+-
T Consensus 49 GL~~~~~g~---LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLT----Wk~~~~f~yd~~tl 120 (264)
T PF05096_consen 49 GLEFLDDGT---LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLT----WKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEETTE---EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEE----SSSSEEEEEETTTT
T ss_pred cEEecCCCE---EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEE----ecCCeEEEEccccc
Confidence 445555663 22344555689999999999998753 4554 33 34555444 676665 34457777777654
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee----EEEeeeCCEEEEEE
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD----TAASHRGNHFFITR 347 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~----~~v~~~g~~lyi~t 347 (534)
+... -|.-..++| ..+.||+.|+++ .+++.++.+|.++-+..+.+.-..+|.. ..++-.++.+|...
T Consensus 121 ~~~~--~~~y~~EGW----GLt~dg~~Li~S---DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANV 191 (264)
T PF05096_consen 121 KKIG--TFPYPGEGW----GLTSDGKRLIMS---DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANV 191 (264)
T ss_dssp EEEE--EEE-SSS------EEEECSSCEEEE----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEE
T ss_pred eEEE--EEecCCcce----EEEcCCCEEEEE---CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEe
Confidence 2111 122122344 345788887763 3356889998766431222222222322 23555678777654
Q ss_pred cCCCCCccEEEEEeCCCCCCceE-----EecC-----C---CCceeeeEEEe--CCEEEEEEeeCCeeEEEEEEC
Q 009441 348 RSDELFNSELLACPVDNTSETTV-----LIPH-----R---ESVKLQDIQLF--IDHLAVYEREGGLQKITTYRL 407 (534)
Q Consensus 348 n~~~~~~~~L~~~~~~~~~~~~~-----li~~-----~---~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~~l 407 (534)
=. .-.|+++|.+++....| +.++ . .+..+-+++.. .+.++++...= +.++.+.+
T Consensus 192 W~----td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W--p~lyeV~l 260 (264)
T PF05096_consen 192 WQ----TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW--PKLYEVKL 260 (264)
T ss_dssp TT----SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT---SEEEEEEE
T ss_pred CC----CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC--CceEEEEE
Confidence 32 35789999877654444 2221 1 12247777774 35666665432 34444433
No 224
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=61.05 E-value=1.3e+02 Score=31.09 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=66.2
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
..+..++++|-+.+|.-+.+.+ .++.++|+..-..-...+++ ....+.|+|.. .++=++-. .+.-.||-.
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D----~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~--D~rl~vWDl 346 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSAD----KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT--DRRLNVWDL 346 (422)
T ss_pred CceeEEEeCCCCCceEEeccCC----CcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc--CCcEEEEec
Confidence 3577889999777666654433 47999998754321112222 23459999998 77666531 222344432
Q ss_pred -ecCCCCC-------CceEeeeecCCce-EEEEEEcCCCcEEEEEecCcceeEEEEE
Q 009441 267 -KLEADQS-------NDICLYHEKDDIY-SLGLQASESKKFLFIASESKITRFVFYL 314 (534)
Q Consensus 267 -~lgt~~~-------~d~lv~~e~d~~~-~v~~~~S~Dg~~l~i~~~~~~~~ev~~~ 314 (534)
++|..+. ..+++|.-..-.. ..++.|.|..-|++..+...+.=.||-+
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 2354431 2345664322222 2357788888888776655443455543
No 225
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=58.15 E-value=1e+02 Score=33.06 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=58.9
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEcc--CC--eEEEEEECCCCCCceEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAG--NE--ALVYITMDEILRPDKAW 264 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~--Dg--~l~Y~~~d~~~r~~~v~ 264 (534)
.+.+..+||||+.|+.+. .+|.++|++++|.+. ..++ ....+.+.- || +-|+.+.+...|...+|
T Consensus 146 ~~~sl~is~D~~~l~~as-------~~ik~~~~~~kevv~-~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS-------RQIKVLDIETKEVVI-TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ccceEEEcCCCCEEEecc-------ceEEEEEccCceEEE-EecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 466789999999998752 489999999999875 3333 123355532 44 56666666556666677
Q ss_pred EeecCCCCCCceEeeeecCCceEEEEEEcCCCc
Q 009441 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKK 297 (534)
Q Consensus 265 ~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~ 297 (534)
...-......-...+..+|...+++-....|+.
T Consensus 218 ~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~ 250 (541)
T KOG4547|consen 218 VVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGT 250 (541)
T ss_pred EEEcccccchhheeeccCCCCeEeccccccccc
Confidence 655422222334455555555554433444554
No 226
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=57.51 E-value=2.2e+02 Score=28.70 Aligned_cols=172 Identities=16% Similarity=0.244 Sum_probs=87.4
Q ss_pred ccceeEEccCCeEEEEEECCCC--CCceEEEeecCCCCC--C-----ceEeeeecCC-ce-----EE-EEEEcCCCcEEE
Q 009441 237 VTASVEWAGNEALVYITMDEIL--RPDKAWLHKLEADQS--N-----DICLYHEKDD-IY-----SL-GLQASESKKFLF 300 (534)
Q Consensus 237 ~~~~~~Ws~Dg~l~Y~~~d~~~--r~~~v~~~~lgt~~~--~-----d~lv~~e~d~-~~-----~v-~~~~S~Dg~~l~ 300 (534)
..+++.|.+++..||.-.|... .+.++|..++..... . +.......+. .+ .. ++.+.+||.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 3467999866545555555432 234566665543110 0 1111111111 11 11 355667777654
Q ss_pred EEecC---cceeEEEEEeCCCCC--ce---eEee---------eccccee-EEEeeeCCEEEEEEcCC----CCC-----
Q 009441 301 IASES---KITRFVFYLDVSKPE--EL---RVLT---------PRVVGVD-TAASHRGNHFFITRRSD----ELF----- 353 (534)
Q Consensus 301 i~~~~---~~~~ev~~~d~~~~~--~~---~~l~---------~~~~g~~-~~v~~~g~~lyi~tn~~----~~~----- 353 (534)
-.-.. .....|+.++.++.. .+ ..+. +...|.+ ..+.++|..||+.+-.. +..
T Consensus 101 s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~ 180 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDN 180 (326)
T ss_pred EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccccc
Confidence 32221 112578888876321 11 1110 0112233 22667888888887542 111
Q ss_pred --ccEEEEEeCCCCC--CceEEecCC------CCceeeeEEEeC-CEEEEEEee-----CCeeEEEEEECC
Q 009441 354 --NSELLACPVDNTS--ETTVLIPHR------ESVKLQDIQLFI-DHLAVYERE-----GGLQKITTYRLP 408 (534)
Q Consensus 354 --~~~L~~~~~~~~~--~~~~li~~~------~~~~l~~~~~~~-~~lv~~~~~-----~g~~~l~~~~l~ 408 (534)
..+|+..+...++ ...|.++-+ .+..+.++.+.+ ++|++.++. ....+|+.+++.
T Consensus 181 ~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 181 GSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred CceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEcc
Confidence 2578888876533 234555544 355688888876 467777776 224577777765
No 227
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=57.48 E-value=41 Score=34.39 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=60.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccC---CccceeEEccCC-eEEEEEECCCCCCceEEEee
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~---~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~ 267 (534)
.|-..+|+|+|.+|+- |++...+.++|+.+-+.+.. .. .-...++|.|-. .+|-+.- ....|+.|.
T Consensus 266 tVl~~~f~~n~N~Llt-----~skD~~~kv~DiR~mkEl~~-~r~Hkkdv~~~~WhP~~~~lftsgg----~Dgsvvh~~ 335 (464)
T KOG0284|consen 266 TVLAVKFNPNGNWLLT-----GSKDQSCKVFDIRTMKELFT-YRGHKKDVTSLTWHPLNESLFTSGG----SDGSVVHWV 335 (464)
T ss_pred eEEEEEEcCCCCeeEE-----ccCCceEEEEehhHhHHHHH-hhcchhhheeeccccccccceeecc----CCCceEEEe
Confidence 5677899999999984 55567999999986665431 21 123458999988 7766542 224677777
Q ss_pred cCCCCCCceEeeeecCCceEEEEEEcCCCcEEE
Q 009441 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLF 300 (534)
Q Consensus 268 lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~ 300 (534)
++.. +.....+.....-..++++-|=|..|.
T Consensus 336 v~~~--~p~~~i~~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 336 VGLE--EPLGEIPPAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred cccc--ccccCCCcccccceeeeeccccceeEe
Confidence 7632 222222322233344567778776443
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=57.29 E-value=2e+02 Score=30.53 Aligned_cols=175 Identities=14% Similarity=0.201 Sum_probs=74.9
Q ss_pred EEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCCeEEEEEECCCCCCceEEE-eecCCC
Q 009441 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWL-HKLEAD 271 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~-~~lgt~ 271 (534)
...++.+|+|++++. .|+..|.|+- .........+....++|..++.+.... . ..+|-. .++...
T Consensus 35 p~~ls~npngr~v~V----~g~geY~iyt-----~~~~r~k~~G~g~~~vw~~~n~yAv~~--~---~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV----CGDGEYEIYT-----ALAWRNKAFGSGLSFVWSSRNRYAVLE--S---SSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEE----EETTEEEEEE-----TTTTEEEEEEE-SEEEE-TSSEEEEE---T---TS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEE----EcCCEEEEEE-----ccCCcccccCceeEEEEecCccEEEEE--C---CCeEEEEEcCccc
Confidence 567899999999999 3444577664 111111222333458999876644432 1 233444 344221
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeeccccee-EEEeeeCCEEEEEEcCC
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRSD 350 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~g~~lyi~tn~~ 350 (534)
.. . .+. ..+.+.--+. |..|.+..++ .|.+.|.++....+.+ +- .++. ..|+++|+.+.+++..
T Consensus 101 ~~--k-~i~---~~~~~~~If~--G~LL~~~~~~----~i~~yDw~~~~~i~~i-~v-~~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 101 VV--K-SIK---LPFSVEKIFG--GNLLGVKSSD----FICFYDWETGKLIRRI-DV-SAVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp TT-----------SS-EEEEE---SSSEEEEETT----EEEEE-TTT--EEEEE-SS--E-EEEEE-TTSSEEEEE-S--
T ss_pred cc--e-EEc---CCcccceEEc--CcEEEEECCC----CEEEEEhhHcceeeEE-ec-CCCcEEEEECCCCEEEEEeCC-
Confidence 10 0 111 1122210111 6666554332 4677787765311111 11 1222 3477778888888753
Q ss_pred CCCccEEEEEeCC----CC--CCc-eE-EecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEE
Q 009441 351 ELFNSELLACPVD----NT--SET-TV-LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITT 404 (534)
Q Consensus 351 ~~~~~~L~~~~~~----~~--~~~-~~-li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~ 404 (534)
..-++..+++ .+ +.+ .. ++.+- ...|.+..|.++ +++....+ +|..
T Consensus 166 ---~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d-~fiYtT~~---~lkY 219 (443)
T PF04053_consen 166 ---SIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED-CFIYTTSN---HLKY 219 (443)
T ss_dssp ---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT-EEEEE-TT---EEEE
T ss_pred ---eEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC-EEEEEcCC---eEEE
Confidence 2556666554 01 111 11 33331 235888899988 44444433 5544
No 229
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=57.14 E-value=21 Score=24.67 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=22.3
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEEC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDI 224 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl 224 (534)
.+..+.|||...+||.+... | +|.|+.+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~-g----~v~v~Rl 40 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTED-G----EVLVYRL 40 (47)
T ss_pred cEEEEEECCCCCEEEEEECC-C----eEEEEEC
Confidence 36678999999999998763 3 5778877
No 230
>PRK13614 lipoprotein LpqB; Provisional
Probab=56.10 E-value=1.1e+02 Score=33.65 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=49.2
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEE-EEEECCCCCeec--cccC----CccceeEEccCCeEEEEEECCCCCCceEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTV-YVIDIETGTPVG--KPLV----GVTASVEWAGNEALVYITMDEILRPDKAW 264 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l-~v~dl~tg~~~~--~~i~----~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~ 264 (534)
.|..+++|+||-++|..+..+|..+..+ .|..-..|++.. ..++ .....+.|..++.|...+.... ...+++
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~~~-~~~~~~ 513 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKASAT-SNVVPE 513 (573)
T ss_pred eeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEeccCC-CcceEE
Confidence 4889999999999999998777654433 233345565322 2111 1224589998888877764332 233577
Q ss_pred EeecC
Q 009441 265 LHKLE 269 (534)
Q Consensus 265 ~~~lg 269 (534)
+..++
T Consensus 514 ~v~v~ 518 (573)
T PRK13614 514 LLSVD 518 (573)
T ss_pred EEEeC
Confidence 77774
No 231
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=55.77 E-value=18 Score=35.19 Aligned_cols=33 Identities=39% Similarity=0.486 Sum_probs=25.8
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP 229 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~ 229 (534)
.-..+.||||+..|||+.+. | +|+|+|+.+.+.
T Consensus 45 QWRkl~WSpD~tlLa~a~S~-G----~i~vfdl~g~~l 77 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAEST-G----TIRVFDLMGSEL 77 (282)
T ss_pred hheEEEECCCCcEEEEEcCC-C----eEEEEeccccee
Confidence 34556899999999999884 3 799999976544
No 232
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=55.40 E-value=2.2e+02 Score=28.18 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=45.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc---CCccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i---~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
.|...+++|||..+|= +|.+ -+|++|++.+-..=--.+ .++..++.|..|+...|+.-++ .+|+-++.
T Consensus 49 eI~~~~F~P~gs~~aS----gG~D-r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD----k~v~~wD~ 119 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFAS----GGSD-RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTD----KTVRGWDA 119 (338)
T ss_pred eEEEEEECCCCCeEee----cCCc-ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCC----ceEEEEec
Confidence 4667799999999984 4655 578899876542110022 2345668999999444554322 25666777
Q ss_pred CCCC
Q 009441 269 EADQ 272 (534)
Q Consensus 269 gt~~ 272 (534)
.+++
T Consensus 120 ~tG~ 123 (338)
T KOG0265|consen 120 ETGK 123 (338)
T ss_pred ccce
Confidence 6653
No 233
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=55.33 E-value=3.4e+02 Score=30.27 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=36.0
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe-eccc-cC--CccceeEEccCC-eEEEEE
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKP-LV--GVTASVEWAGNE-ALVYIT 253 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~-~~~~-i~--~~~~~~~Ws~Dg-~l~Y~~ 253 (534)
+.++||++|+.|+-.. |+ .+-+.|+++|+. ++-. .+ ..-..++-+||+ .+++..
T Consensus 23 G~~~~s~nG~~L~t~~---~d---~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~ 81 (775)
T KOG0319|consen 23 GPVAWSSNGQHLYTAC---GD---RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS 81 (775)
T ss_pred CceeECCCCCEEEEec---Cc---eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee
Confidence 4579999999998764 33 578889999987 4321 11 122447788998 555544
No 234
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.15 E-value=68 Score=37.07 Aligned_cols=97 Identities=9% Similarity=0.140 Sum_probs=59.3
Q ss_pred EEEEEEEECCCCC-EEEEEEcCCCCeEEEEEEEECCCCC----eeccccCCccceeEEccCC-eEEEEEECCCCCCceEE
Q 009441 191 YSVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGT----PVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 264 (534)
Q Consensus 191 ~~l~~~~~SPDG~-~LA~~~d~~G~E~~~l~v~dl~tg~----~~~~~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~ 264 (534)
...+.+.|.||+. .|+.+.+.++. ..|.+||+.--. .+...-.|+.+ +.|.+.+ +++.++- +..+++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~--PviqlWDlR~assP~k~~~~H~~Gils-lsWc~~D~~lllSsg----kD~~ii 279 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSA--PVIQLWDLRFASSPLKILEGHQRGILS-LSWCPQDPRLLLSSG----KDNRII 279 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCC--ceeEeecccccCCchhhhcccccceee-eccCCCCchhhhccc----CCCCee
Confidence 5677889999986 45554444443 678888865321 12112234443 8999877 8877763 345889
Q ss_pred EeecCCCCCCceEeeee-cCCceEEEEEEcCCCcE
Q 009441 265 LHKLEADQSNDICLYHE-KDDIYSLGLQASESKKF 298 (534)
Q Consensus 265 ~~~lgt~~~~d~lv~~e-~d~~~~v~~~~S~Dg~~ 298 (534)
+++..|+ ++|.+- ....|+.++.|.+-.--
T Consensus 280 ~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 280 CWNPNTG----EVLGELPAQGNWCFDVQWCPRNPS 310 (1049)
T ss_pred EecCCCc----eEeeecCCCCcceeeeeecCCCcc
Confidence 9988775 355542 23356667777665543
No 235
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=51.96 E-value=41 Score=21.23 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVID 223 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~d 223 (534)
.|..+.|+|++++||-+... ..|+|+|
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D-----~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSD-----GTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETT-----SEEEEEE
T ss_pred cEEEEEEecccccceeeCCC-----CEEEEEC
Confidence 47788999999999876542 3566665
No 236
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=51.93 E-value=22 Score=36.02 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=28.7
Q ss_pred EEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCC
Q 009441 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS 525 (534)
Q Consensus 486 ~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGg 525 (534)
.+.+.+ ...+.|++.|+.|+.. ....+.|+|+|.|||
T Consensus 63 ~~dv~~--~~~~~l~vRly~P~~~-~~~~~~p~lvyfHGG 99 (336)
T KOG1515|consen 63 SKDVTI--DPFTNLPVRLYRPTSS-SSETKLPVLVYFHGG 99 (336)
T ss_pred eeeeEe--cCCCCeEEEEEcCCCC-CcccCceEEEEEeCC
Confidence 344443 4678899999998876 444789999999998
No 237
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=51.86 E-value=28 Score=39.27 Aligned_cols=42 Identities=26% Similarity=0.432 Sum_probs=29.4
Q ss_pred eecchhcCCCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEEC
Q 009441 179 LDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDI 224 (534)
Q Consensus 179 lD~n~~a~~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl 224 (534)
+|+..+++ ||..|.. +||||+-+|+....+--..++++|.+.
T Consensus 228 ~d~a~~~~--g~~~l~~--lSpDGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 228 TDMAFFAE--GVLKLAS--LSPDGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred ccHHHHhh--chhhhee--eCCCCcEEEEeecCCccceeeeeeecc
Confidence 44444543 5555554 999999999999865444579998764
No 238
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=50.86 E-value=1.2e+02 Score=31.19 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=59.1
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCc-----cceeEEccCCeEEEEEECCCCCCceEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-----TASVEWAGNEALVYITMDEILRPDKAWL 265 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~-----~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~ 265 (534)
.|.++..|+||..|.-. .+ .-++.++|+.+.+.... ..++. .+.+.||||+.+.-... -...||.
T Consensus 343 ~vtSl~ls~~g~~lLss-sR----Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS----~dgsv~i 413 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSS-SR----DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS----ADGSVYI 413 (459)
T ss_pred ceeeEeeccCCeEEeee-cC----CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc----CCCcEEE
Confidence 57788999999877654 21 13688899988776542 22221 24477899984333321 1236888
Q ss_pred eecCCCCCCceEeeeec-CCceEEEEEEcCCCcEEEEE
Q 009441 266 HKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIA 302 (534)
Q Consensus 266 ~~lgt~~~~d~lv~~e~-d~~~~v~~~~S~Dg~~l~i~ 302 (534)
|.+-++.-+ .+.... .+.-...+.|++.|++++-.
T Consensus 414 W~v~tgKlE--~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 414 WSVFTGKLE--KVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred EEccCceEE--EEeccCCCCcceEEEEEcCCCchhhcc
Confidence 887665322 222221 11123457899999987643
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=49.96 E-value=21 Score=37.80 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=26.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 231 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~ 231 (534)
.+-.+.||||||||+. |.|.--+.||.+..++.+.
T Consensus 334 GLLCvcWSPDGKyIvt-----GGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVT-----GGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred ceEEEEEcCCccEEEe-----cCCcceEEEEEeccceEEE
Confidence 5677899999999996 4444566777777777654
No 240
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.61 E-value=1.1e+02 Score=30.05 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=48.0
Q ss_pred CCceEEeecchhcCC------CCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCC-eeccccC--Cc-cceeE
Q 009441 173 PPEHLILDENVKAEG------RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT-PVGKPLV--GV-TASVE 242 (534)
Q Consensus 173 ~~eevllD~n~~a~~------~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~-~~~~~i~--~~-~~~~~ 242 (534)
+..-.+||+|.-.+. .+-...+.=.+||||++|--+...-...+..|-|+|...+= .+. .++ ++ ...+.
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvg-E~~t~GiGpHev~ 168 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVG-EFSTHGIGPHEVT 168 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceec-ccccCCcCcceeE
Confidence 345677888764321 12122344479999999877766544446789999987431 111 222 23 34689
Q ss_pred EccCCeEEEEE
Q 009441 243 WAGNEALVYIT 253 (534)
Q Consensus 243 Ws~Dg~l~Y~~ 253 (534)
|.+||..+...
T Consensus 169 lm~DGrtlvva 179 (366)
T COG3490 169 LMADGRTLVVA 179 (366)
T ss_pred EecCCcEEEEe
Confidence 99999544444
No 241
>PHA03098 kelch-like protein; Provisional
Probab=48.71 E-value=3.8e+02 Score=28.92 Aligned_cols=163 Identities=9% Similarity=-0.027 Sum_probs=76.5
Q ss_pred CCcEEEEEecC--cceeEEEEEeCCCCCceeEeeecccce-eEEEeeeCCEEEEEEcCC--CCCccEEEEEeCCCCCCce
Q 009441 295 SKKFLFIASES--KITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSD--ELFNSELLACPVDNTSETT 369 (534)
Q Consensus 295 Dg~~l~i~~~~--~~~~ev~~~d~~~~~~~~~l~~~~~g~-~~~v~~~g~~lyi~tn~~--~~~~~~L~~~~~~~~~~~~ 369 (534)
+++..++.... ...+.++..+..+.. |..+.+..... .......++.+|+..... +.....+.+.|..+ ..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t---~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNT---NK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCC---Ce
Confidence 55544443322 223567777877654 55443321111 112334578999987631 11223566666543 46
Q ss_pred E-EecCCCC-ceeeeEEEeCCEEEEEEeeCC------eeEEEEEECCCCCCcccccCCCceeeecCceeeEeCCCCccCc
Q 009441 370 V-LIPHRES-VKLQDIQLFIDHLAVYEREGG------LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSS 441 (534)
Q Consensus 370 ~-li~~~~~-~~l~~~~~~~~~lv~~~~~~g------~~~l~~~~l~~~g~~~~~~~~~~~i~lp~~~~~i~~~~~~~~~ 441 (534)
| .++.-+. ..-..+...+++|++..-.+. ...+++++..+ +++.. ......|.....+ ...+
T Consensus 418 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~-~~W~~----~~~~~~~r~~~~~----~~~~- 487 (534)
T PHA03098 418 WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT-NKWTE----LSSLNFPRINASL----CIFN- 487 (534)
T ss_pred eeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCC-Cceee----CCCCCcccccceE----EEEC-
Confidence 7 3332211 112234456788887653321 23488888775 33210 0011111111011 1112
Q ss_pred cEEEEEeccCCC---CCeEEEEECCCCcEEEEEE
Q 009441 442 RILRFHYSSLRT---PPSVYDYDMDMGISVLKKI 472 (534)
Q Consensus 442 ~~l~~~~sS~~~---P~~~y~~d~~~~~~~~~~~ 472 (534)
+.+++ +.+... -..++.||+++++++....
T Consensus 488 ~~iyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 488 NKIYV-VGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CEEEE-EcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 23332 333321 2478999999998876643
No 242
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.63 E-value=2.8e+02 Score=27.47 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=20.9
Q ss_pred cceeEEccCC-eEEEEEECCCCCCceEEEeecC
Q 009441 238 TASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 238 ~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
+.+++|.+.+ +||+... ..|-.||..+.+
T Consensus 183 fEGlA~d~~~~~l~~aKE---r~P~~I~~~~~~ 212 (316)
T COG3204 183 FEGLAWDPVDHRLFVAKE---RNPIGIFEVTQS 212 (316)
T ss_pred ceeeecCCCCceEEEEEc---cCCcEEEEEecC
Confidence 6789999988 7877763 246678877643
No 243
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.09 E-value=3e+02 Score=30.84 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=69.6
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc---CCccceeEEccCCeEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i---~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l 268 (534)
+|..+.|||--...-++.+.+| .|..||+..-..-...+ .+...-+.|.|++.++=+. +|..+|..|+.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG----~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG----GRDK~vkiWd~ 249 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSG----YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG----GRDKMVKIWDM 249 (839)
T ss_pred hhhceeeccCCCceEEEecCCc----eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec----CCCccEEEEec
Confidence 4667788885444444444455 68899986432111111 2223347899976443332 45556777788
Q ss_pred CCCCCCceEeeeecCCceEE-EEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 269 EADQSNDICLYHEKDDIYSL-GLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 269 gt~~~~d~lv~~e~d~~~~v-~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
++.......+.+.. .-+ .+.|-|+..|.+.+.......+|++-|+..+=
T Consensus 250 t~~~~~~~~tInTi---apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 250 TDSRAKPKHTINTI---APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cCCCccceeEEeec---ceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 76654444443321 222 36788998888776666666778888887653
No 244
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=47.57 E-value=80 Score=33.31 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=56.4
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecccc-CCccceeEEccCC-eEEEEEECCCCCCceEEEeecC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i-~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.|-+...+|.|.+||.+.. ..++.|+....-+-....+ +.+.=++.|++.| +|.=+..|.. -.+|+.-.|
T Consensus 594 QIfSLg~cP~~dWlavGMe-----ns~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl---LnawrtPyG 665 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGME-----NSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL---LNAWRTPYG 665 (705)
T ss_pred hheecccCCCccceeeecc-----cCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh---hhhccCccc
Confidence 4555678999999999655 3455566554333222222 2333348899999 4444444432 235554444
Q ss_pred CCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecC
Q 009441 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES 305 (534)
Q Consensus 270 t~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~ 305 (534)
+ -||+-+...-.++-.+|.|.+||+-.++.
T Consensus 666 a------siFqskE~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 666 A------SIFQSKESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred c------ceeeccccCcceeeeeccCceEEEecCCC
Confidence 3 36664333323345678999998754443
No 245
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=47.54 E-value=86 Score=31.14 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=42.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---c-cceeEEccCC-eEEEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---V-TASVEWAGNE-ALVYIT 253 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~-~~~~~Ws~Dg-~l~Y~~ 253 (534)
.|.-++++-+|.+||=+.. .| .-|+|+|..+|+.+.+--.| + ...++|+||+ .+.-.+
T Consensus 183 ~Iacv~Ln~~Gt~vATaSt-kG---TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATAST-KG---TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred ceeEEEEcCCccEEEEecc-Cc---EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence 5788899999999996544 45 68999999999987652222 1 2458999999 555544
No 246
>PRK13615 lipoprotein LpqB; Provisional
Probab=46.97 E-value=2e+02 Score=31.51 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=49.7
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCC--ee-ccc--c-CC--ccceeEEccCCeEEEEEECCCCCCceE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PV-GKP--L-VG--VTASVEWAGNEALVYITMDEILRPDKA 263 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~--~~-~~~--i-~~--~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v 263 (534)
.|..+++|+||-++|..++.+|..+..+-.+--.+|. .+ ... + .+ ....+.|..++.|.-..... ....++
T Consensus 418 ~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~-~~~~~v 496 (557)
T PRK13615 418 RVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAP-DGERQV 496 (557)
T ss_pred eeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccC-CCCceE
Confidence 5889999999999999988776555444323224442 23 221 1 11 22458899888887776332 223467
Q ss_pred EEeecCCC
Q 009441 264 WLHKLEAD 271 (534)
Q Consensus 264 ~~~~lgt~ 271 (534)
++..++..
T Consensus 497 ~~v~v~g~ 504 (557)
T PRK13615 497 ELHQVGGP 504 (557)
T ss_pred EEEECCCc
Confidence 88888754
No 247
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=46.59 E-value=3e+02 Score=27.20 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred EEEEEEECCCC-----CeeccccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCceEeeeecC-CceEEEE
Q 009441 217 YTVYVIDIETG-----TPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD-DIYSLGL 290 (534)
Q Consensus 217 ~~l~v~dl~tg-----~~~~~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d-~~~~v~~ 290 (534)
.++-|+|+++| +..-..-..-...++|+.+|.=.|.+....+ .|..++|..-. .-+++||.+. ..-.+.+
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG---SvRmFDLR~le-HSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADG---SVRMFDLRSLE-HSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCC---cEEEEEecccc-cceEEecCCCCCCcceee
Q ss_pred EEcCCCcEEEEEecCcceeEEEEEeCCCCC-ceeEeeecccceeEE-EeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCc
Q 009441 291 QASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTA-ASHRGNHFFITRRSDELFNSELLACPVDNTSET 368 (534)
Q Consensus 291 ~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~~~l~~~~~g~~~~-v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~ 368 (534)
++.+..-. ++..-..+.++|-++|+.-+. ....|......+..- +.+....-+.....+ .+....|+.+....
T Consensus 249 swnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD----~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 249 SWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD----CQALIWDLQQMPRE 323 (364)
T ss_pred ccCcCCch-HHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc----ceEEEEeccccccc
Q ss_pred eE---EecCCCCceeeeEEE---eCCEEEEEEee
Q 009441 369 TV---LIPHRESVKLQDIQL---FIDHLAVYERE 396 (534)
Q Consensus 369 ~~---li~~~~~~~l~~~~~---~~~~lv~~~~~ 396 (534)
.- +.....+..+..+.| .+|.+.+...+
T Consensus 324 ~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 324 NGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCCCchhhhhccceeeeeeecccCCCEEEEEecC
No 248
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=46.52 E-value=1.9e+02 Score=28.24 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=36.7
Q ss_pred EecCCCCceeeeEEE-eCCEEEEEEeeCCeeEEEEEECCCCCCcccccCCCceeeecC
Q 009441 371 LIPHRESVKLQDIQL-FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID 427 (534)
Q Consensus 371 li~~~~~~~l~~~~~-~~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~~~~~i~lp~ 427 (534)
.+|++....-+++.. .++.|+-..-.-|.+.|+.+++.+ |+.. +...+|.
T Consensus 38 ~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~------~~~~l~~ 88 (264)
T PF05096_consen 38 TYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVL------QSVPLPP 88 (264)
T ss_dssp EEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEE------EEEE-TT
T ss_pred ECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEE------EEEECCc
Confidence 478888877889988 678999999999999999999997 6632 3455654
No 249
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=46.26 E-value=1.7e+02 Score=29.50 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=50.7
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe---ecc--cc----CCccceeEEccC----C--eEEEEEECC--
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP---VGK--PL----VGVTASVEWAGN----E--ALVYITMDE-- 256 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~---~~~--~i----~~~~~~~~Ws~D----g--~l~Y~~~d~-- 256 (534)
.++.+.|||+.++ ....| .|++++ ..|.. +.+ .+ +....++++.|+ + .++|+..+.
T Consensus 5 ~~~a~~pdG~l~v--~e~~G----~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 5 RSMAFLPDGRLLV--AERSG----RIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp EEEEEETTSCEEE--EETTT----EEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred eEEEEeCCCcEEE--EeCCc----eEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 3568899997644 34455 477777 33432 111 11 112345888885 4 333443211
Q ss_pred CCCCceEEEeecCCC---CCCceEeeee-cC---C-ceEEEEEEcCCCcEEEEEecC
Q 009441 257 ILRPDKAWLHKLEAD---QSNDICLYHE-KD---D-IYSLGLQASESKKFLFIASES 305 (534)
Q Consensus 257 ~~r~~~v~~~~lgt~---~~~d~lv~~e-~d---~-~~~v~~~~S~Dg~~l~i~~~~ 305 (534)
.....+|.++.+..+ ....+.|+.. +. . ..--.+.+.||| +|++.+.+
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~ 133 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGD 133 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCC
Confidence 122347888777433 1122334432 22 1 233357889999 77777754
No 250
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=46.25 E-value=39 Score=33.00 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=31.4
Q ss_pred EEEEEEEEcC-CCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCcC
Q 009441 485 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEVI 529 (534)
Q Consensus 485 ~~e~v~~~S~-DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~~ 529 (534)
+.+.....|+ -|.++++.|+.|++. . .++.|+|++.||..+..
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~-~-~~~~P~vvllHG~~~~~ 55 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQA-A-AGPVPVLWYLSGLTCTH 55 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCc-c-CCCCCEEEEccCCCCCc
Confidence 4455545554 678899999999875 3 35689999999987643
No 251
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=45.89 E-value=1.3e+02 Score=30.56 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=64.9
Q ss_pred cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc----ccCCccceeEEccCCeEEEEEECCCCCCceEE-
Q 009441 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PLVGVTASVEWAGNEALVYITMDEILRPDKAW- 264 (534)
Q Consensus 190 ~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~----~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~- 264 (534)
.-+|-.+.|||..+-+..+.+.+| .|+|+|+.+|.--+- .-..-..-+.|..+-.|+-+.-|+ ...+||
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd--Gt~~iwD 330 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD--GTLSIWD 330 (440)
T ss_pred ccchhhhccCCccCceEEeeecCc----eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC--ceEEEEE
Confidence 357888999999999999888877 599999998832211 111113447897654543333232 122343
Q ss_pred --EeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCC
Q 009441 265 --LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317 (534)
Q Consensus 265 --~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~ 317 (534)
.++.|+ .+..|.-.... ..++.|+|...-++..++....-.+|=+.++
T Consensus 331 LR~~~~~~----pVA~fk~Hk~p-ItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 331 LRQFKSGQ----PVATFKYHKAP-ITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred hhhccCCC----cceeEEeccCC-eeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 333342 23344322111 2346788866665554444444445554443
No 252
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.41 E-value=2.2e+02 Score=28.90 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=42.5
Q ss_pred EEEEEEEECCCCCeecc--ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEc
Q 009441 216 IYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQAS 293 (534)
Q Consensus 216 ~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S 293 (534)
.-+|+++|+.+|.-+-. ...+-..+++++|.|.+.+...|+. .|..+++.+.+.. ... +..+.|...+.+-
T Consensus 313 DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk----tlrvwdl~~~~cm--k~~-~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 313 DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK----TLRVWDLKNLQCM--KTL-EAHEHFVTSLDFH 385 (406)
T ss_pred cceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC----cEEEEEeccceee--ecc-CCCcceeEEEecC
Confidence 45899999999976542 1122234599999996666665542 3444455443211 111 2344555455554
Q ss_pred CCCcEE
Q 009441 294 ESKKFL 299 (534)
Q Consensus 294 ~Dg~~l 299 (534)
.+.-|+
T Consensus 386 ~~~p~V 391 (406)
T KOG0295|consen 386 KTAPYV 391 (406)
T ss_pred CCCceE
Confidence 444443
No 253
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=45.39 E-value=3.3e+02 Score=27.32 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=64.9
Q ss_pred EEEEEECCCCCEEEEEEcC-CCCeEEEEEEEECCCCCeec-----ccc-----------CC-ccceeEEccCCe-EEEEE
Q 009441 193 VGCFQVSPDNKLVAYAEDT-KGDEIYTVYVIDIETGTPVG-----KPL-----------VG-VTASVEWAGNEA-LVYIT 253 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d~-~G~E~~~l~v~dl~tg~~~~-----~~i-----------~~-~~~~~~Ws~Dg~-l~Y~~ 253 (534)
.-++++.+||.++.-..-. .+.....|+.++.. |+.+. ..+ .+ .+.+++.+|||+ ||...
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3345666677544322111 11123567777776 55422 111 12 256799999994 55554
Q ss_pred ECC----C-------CCCceEEEeecCCCC-CCceEeeeecC-----CceEE-EEEEcCCCcEEEEEecC----cceeEE
Q 009441 254 MDE----I-------LRPDKAWLHKLEADQ-SNDICLYHEKD-----DIYSL-GLQASESKKFLFIASES----KITRFV 311 (534)
Q Consensus 254 ~d~----~-------~r~~~v~~~~lgt~~-~~d~lv~~e~d-----~~~~v-~~~~S~Dg~~l~i~~~~----~~~~ev 311 (534)
... . .+..+++.++..++. ...+.+|.-.. ..+-+ ++..-+|++++++.-.. .....|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 211 1 112567777776521 22345554221 23333 46677888887776531 234567
Q ss_pred EEEeCCC
Q 009441 312 FYLDVSK 318 (534)
Q Consensus 312 ~~~d~~~ 318 (534)
|.+++..
T Consensus 246 ~~v~l~~ 252 (326)
T PF13449_consen 246 YRVDLSD 252 (326)
T ss_pred EEEEccc
Confidence 7777654
No 254
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=45.35 E-value=3.2e+02 Score=28.82 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=61.7
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
..|..+-.=|.|..||-+ +|+ .++|||+.+|..+.-...+ ....+....|+ .++=.+.|. .|..+
T Consensus 197 ~pVe~vl~lpsgs~iasA---gGn---~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVf 265 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASA---GGN---SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVF 265 (487)
T ss_pred CceeeEEEcCCCCEEEEc---CCC---eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEE
Confidence 346666777888888753 675 6999999866433211111 22347777777 554444442 33334
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCc
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK 306 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~ 306 (534)
++++ =.+++.-.-++-.+++++|+|++.+++...+.
T Consensus 266 d~t~----~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 266 DTTN----YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred Eccc----eEEEEeeecccceeeEEecCCCceEEEecccc
Confidence 4432 24566544444567789999999999876554
No 255
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=2.8e+02 Score=26.71 Aligned_cols=88 Identities=17% Similarity=0.063 Sum_probs=46.4
Q ss_pred CCCeEEEEEEEECCCCCeecc-ccCC---ccceeEEccC-C-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCc
Q 009441 212 KGDEIYTVYVIDIETGTPVGK-PLVG---VTASVEWAGN-E-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDI 285 (534)
Q Consensus 212 ~G~E~~~l~v~dl~tg~~~~~-~i~~---~~~~~~Ws~D-g-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~ 285 (534)
+|. ...+.|++.+.++-..+ .+++ -.-.++|.|. | ...|+..-...+.--||..+....+-+..++ ++ -+.
T Consensus 181 gGc-Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~-f~~ 257 (299)
T KOG1332|consen 181 GGC-DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EE-FPD 257 (299)
T ss_pred cCC-ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc-cc-CCc
Confidence 444 36889999888754332 2433 1235899987 4 4444443222222334544432233233333 32 223
Q ss_pred eEEEEEEcCCCcEEEEE
Q 009441 286 YSLGLQASESKKFLFIA 302 (534)
Q Consensus 286 ~~v~~~~S~Dg~~l~i~ 302 (534)
....+++|..|..|.+.
T Consensus 258 ~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVS 274 (299)
T ss_pred ceEEEEEeccccEEEEe
Confidence 33357899999988764
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.50 E-value=6.1e+02 Score=29.81 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=50.9
Q ss_pred EEEEEEcCCCcEEEEEecCc--c-eeEEEEEeCCCCCceeEeeecccceeEE--EeeeCCEEEEEEcCCCCCccEEEEEe
Q 009441 287 SLGLQASESKKFLFIASESK--I-TRFVFYLDVSKPEELRVLTPRVVGVDTA--ASHRGNHFFITRRSDELFNSELLACP 361 (534)
Q Consensus 287 ~v~~~~S~Dg~~l~i~~~~~--~-~~ev~~~d~~~~~~~~~l~~~~~g~~~~--v~~~g~~lyi~tn~~~~~~~~L~~~~ 361 (534)
.+.++|-.||+|+++++... . ...+.+.+.+ + .+....+..+|.+-. |.|.|..+.-.... ..+..|+-..
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~--~~~~~VvFfE 287 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRL--PDRHDVVFFE 287 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEc--CCCcEEEEEe
Confidence 45678999999999887532 2 2344444444 2 255555555565433 55666655444432 3345555554
Q ss_pred CCCCCCceEEecC-CCCceeeeEEEeCC
Q 009441 362 VDNTSETTVLIPH-RESVKLQDIQLFID 388 (534)
Q Consensus 362 ~~~~~~~~~li~~-~~~~~l~~~~~~~~ 388 (534)
-..-.-.+..++. ..+..+..+.|..+
T Consensus 288 rNGLrhgeF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 288 RNGLRHGEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred cCCcEeeeEecCCCCCCceeeEEEECCC
Confidence 2211112223332 23445777888653
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=43.48 E-value=3.7e+02 Score=27.31 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=67.8
Q ss_pred eCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCcccccC
Q 009441 339 RGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQ 418 (534)
Q Consensus 339 ~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~~~~~~ 418 (534)
.++.+|+.+.. +.|+.++..+++ ..|-.+.. ....+.+.++++|+.. .+| .|+.++..+ |+.+..
T Consensus 240 ~~~~vy~~~~~-----g~l~a~d~~tG~-~~W~~~~~---~~~~p~~~~~~vyv~~-~~G--~l~~~d~~t-G~~~W~-- 304 (377)
T TIGR03300 240 DGGQVYAVSYQ-----GRVAALDLRSGR-VLWKRDAS---SYQGPAVDDNRLYVTD-ADG--VVVALDRRS-GSELWK-- 304 (377)
T ss_pred ECCEEEEEEcC-----CEEEEEECCCCc-EEEeeccC---CccCceEeCCEEEEEC-CCC--eEEEEECCC-CcEEEc--
Confidence 46778776542 468888886543 45733321 1233445677877764 334 588888865 663211
Q ss_pred CCceeeecCceeeEeCCCCccCccEEEEEeccCCCCCeEEEEECCCCcEEEEEEccccC-CCCCCC-cEEEEEEEEcCCC
Q 009441 419 GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLG-GFDTNN-YFTERKWASASDG 496 (534)
Q Consensus 419 ~~~~i~lp~~~~~i~~~~~~~~~~~l~~~~sS~~~P~~~y~~d~~~~~~~~~~~~~~~~-~~d~~~-~~~e~v~~~S~DG 496 (534)
.-.++.. ..+ +....++.+++.- .-+.+|.+|..+|+..... +..+ .+.... +.-+.+.+.+.||
T Consensus 305 ---~~~~~~~--~~s--sp~i~g~~l~~~~----~~G~l~~~d~~tG~~~~~~--~~~~~~~~~sp~~~~~~l~v~~~dG 371 (377)
T TIGR03300 305 ---NDELKYR--QLT--APAVVGGYLVVGD----FEGYLHWLSREDGSFVARL--KTDGSGIASPPVVVGDGLLVQTRDG 371 (377)
T ss_pred ---cccccCC--ccc--cCEEECCEEEEEe----CCCEEEEEECCCCCEEEEE--EcCCCccccCCEEECCEEEEEeCCc
Confidence 0011111 111 1111234444432 2367999999888854322 2111 122222 2336788888888
Q ss_pred ce
Q 009441 497 TQ 498 (534)
Q Consensus 497 ~~ 498 (534)
.-
T Consensus 372 ~l 373 (377)
T TIGR03300 372 DL 373 (377)
T ss_pred eE
Confidence 53
No 258
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=43.31 E-value=4.3e+02 Score=28.06 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred EEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-ccCCcc--------ceeEEccCC---------eEEEEEECC
Q 009441 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVT--------ASVEWAGNE---------ALVYITMDE 256 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i~~~~--------~~~~Ws~Dg---------~l~Y~~~d~ 256 (534)
.+.+.||| .|.++....| .|++++..++..... .++.+. -++++.||- .++|+..+.
T Consensus 34 ~maflPDG-~llVtER~~G----~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 34 ALLWGPDN-QLWVTERATG----KILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred EEEEcCCC-eEEEEEecCC----EEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Q ss_pred CCC---CceEEEeec---CCCCCCceEeeeecCCceEE---EEEEcCCCcEEEEEecC
Q 009441 257 ILR---PDKAWLHKL---EADQSNDICLYHEKDDIYSL---GLQASESKKFLFIASES 305 (534)
Q Consensus 257 ~~r---~~~v~~~~l---gt~~~~d~lv~~e~d~~~~v---~~~~S~Dg~~l~i~~~~ 305 (534)
... ..+|.++++ +....+.+.|+......-.. .+.+.|||+ |+|...+
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD 165 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGE 165 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECC
No 259
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=43.27 E-value=1.7e+02 Score=30.74 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=61.9
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCC-CCeeccccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~t-g~~~~~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
.++.++|.|-.-+|..+... ...++||++-. ++.+.. .-+ ....+.|+++| .|+=.++|. .|..+
T Consensus 216 gvsai~~fp~~~hLlLS~gm----D~~vklW~vy~~~~~lrt-f~gH~k~Vrd~~~s~~g~~fLS~sfD~-----~lKlw 285 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGM----DGLVKLWNVYDDRRCLRT-FKGHRKPVRDASFNNCGTSFLSASFDR-----FLKLW 285 (503)
T ss_pred ccchhhhccceeeEEEecCC----CceEEEEEEecCcceehh-hhcchhhhhhhhccccCCeeeeeecce-----eeeee
Confidence 57788999944444443222 25788888866 555542 111 12348999999 776666653 34455
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~ 320 (534)
+..|++. ..-|+.....+. +..-||+..+|+...+ +..|...|...++
T Consensus 286 DtETG~~--~~~f~~~~~~~c--vkf~pd~~n~fl~G~s--d~ki~~wDiRs~k 333 (503)
T KOG0282|consen 286 DTETGQV--LSRFHLDKVPTC--VKFHPDNQNIFLVGGS--DKKIRQWDIRSGK 333 (503)
T ss_pred ccccceE--EEEEecCCCcee--eecCCCCCcEEEEecC--CCcEEEEeccchH
Confidence 6665531 223443323333 3445777556554333 2355666666553
No 260
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=43.18 E-value=34 Score=37.02 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=31.0
Q ss_pred cEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEc
Q 009441 484 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 523 (534)
Q Consensus 484 ~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gY 523 (534)
+..+.++++-+||+++-.-|.+|++. ++.|+||.-.
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~~----g~~Pvll~~~ 52 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAGA----GPLPVLLSRT 52 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCCC----CCCceeEEee
Confidence 66788999999999999999999975 6788888753
No 261
>PRK13613 lipoprotein LpqB; Provisional
Probab=42.46 E-value=2.3e+02 Score=31.35 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=48.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEE-EECCCCC-eecc--cc-CC--ccceeEEccCCeEEEEEECCCCCCceEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYV-IDIETGT-PVGK--PL-VG--VTASVEWAGNEALVYITMDEILRPDKAW 264 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v-~dl~tg~-~~~~--~i-~~--~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~ 264 (534)
.|..+++|+||-++|..++.+|..+..+-. ..-..|+ .+.. .+ .+ ....++|..++.|........ ....+|
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~-~~~~v~ 534 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEG-GVQQAR 534 (599)
T ss_pred EeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEEEEeccCC-CCcceE
Confidence 689999999999999999876655433333 3334453 2211 11 11 124589998888877543221 124588
Q ss_pred EeecCCC
Q 009441 265 LHKLEAD 271 (534)
Q Consensus 265 ~~~lgt~ 271 (534)
+..++..
T Consensus 535 ~v~vdG~ 541 (599)
T PRK13613 535 YVQVDGS 541 (599)
T ss_pred EEecCCc
Confidence 8888643
No 262
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=42.11 E-value=3.8e+02 Score=27.01 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=58.2
Q ss_pred eEEEEEEEECCCCCeecccc--CCccceeEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeee--cCCceEEE
Q 009441 215 EIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHE--KDDIYSLG 289 (534)
Q Consensus 215 E~~~l~v~dl~tg~~~~~~i--~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e--~d~~~~v~ 289 (534)
-...|+|+|+.+++....-+ -+....+.+-|+. .+..+... .+.|..|++.+.. =+.||++ ...+-.++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk----D~svRlwnI~~~~--Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK----DHSVRLWNIQTDV--CVAVFGGVEGHRDEVLS 186 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC----CceEEEEeccCCe--EEEEecccccccCcEEE
Confidence 46799999999887654211 1123457788887 77766532 2467888887653 3567763 23344667
Q ss_pred EEEcCCCcEEEEEecCcce-eEEEEEe
Q 009441 290 LQASESKKFLFIASESKIT-RFVFYLD 315 (534)
Q Consensus 290 ~~~S~Dg~~l~i~~~~~~~-~ev~~~d 315 (534)
+.++.||.+|+ +...+. -.+|.++
T Consensus 187 vD~~~~gd~i~--ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 187 VDFSLDGDRIA--SCGMDHSLKLWRLN 211 (385)
T ss_pred EEEcCCCCeee--ccCCcceEEEEecC
Confidence 88999999764 222222 2456555
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=42.00 E-value=3.9e+02 Score=27.14 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=48.0
Q ss_pred eEEEEEeCCCCC-ceeEeeecccceeEEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeC
Q 009441 309 RFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI 387 (534)
Q Consensus 309 ~ev~~~d~~~~~-~~~~l~~~~~g~~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~ 387 (534)
..++.+|..+++ .|+.-.+. .....+..+++.+|+.+. ++.|+.+|.++++ ..|-.... +.......+.+
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v~~~~v~v~~~-----~g~l~ald~~tG~-~~W~~~~~-~~~~~~p~v~~ 145 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDE--RLSGGVGADGGLVFVGTE-----KGEVIALDAEDGK-ELWRAKLS-SEVLSPPLVAN 145 (377)
T ss_pred CeEEEEEccCCcEeeeecCCC--CcccceEEcCCEEEEEcC-----CCEEEEEECCCCc-EeeeeccC-ceeecCCEEEC
Confidence 357888877665 33221111 111123345778886553 2578898876643 35622211 11223333456
Q ss_pred CEEEEEEeeCCeeEEEEEECCCCCCc
Q 009441 388 DHLAVYEREGGLQKITTYRLPAVGEP 413 (534)
Q Consensus 388 ~~lv~~~~~~g~~~l~~~~l~~~g~~ 413 (534)
+.+++... +| .|+.++..+ |+.
T Consensus 146 ~~v~v~~~-~g--~l~a~d~~t-G~~ 167 (377)
T TIGR03300 146 GLVVVRTN-DG--RLTALDAAT-GER 167 (377)
T ss_pred CEEEEECC-CC--eEEEEEcCC-Cce
Confidence 66665432 33 588888865 664
No 264
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=40.84 E-value=1.9e+02 Score=23.10 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=31.3
Q ss_pred CeEEEEEEEECCCCCeeccccCCc--cceeEEccCC-eEEEEEECCCCCCceEEEeecC
Q 009441 214 DEIYTVYVIDIETGTPVGKPLVGV--TASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (534)
Q Consensus 214 ~E~~~l~v~dl~tg~~~~~~i~~~--~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lg 269 (534)
.-...|..+|..|++... .+.+. ..+++-++|+ .+++.-. ..++|.+|.|.
T Consensus 34 ~~~GRll~ydp~t~~~~v-l~~~L~fpNGVals~d~~~vlv~Et----~~~Ri~rywl~ 87 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTV-LLDGLYFPNGVALSPDESFVLVAET----GRYRILRYWLK 87 (89)
T ss_dssp ---EEEEEEETTTTEEEE-EEEEESSEEEEEE-TTSSEEEEEEG----GGTEEEEEESS
T ss_pred CCCcCEEEEECCCCeEEE-ehhCCCccCeEEEcCCCCEEEEEec----cCceEEEEEEe
Confidence 335678999999997532 23332 3569999999 5555532 23578888774
No 265
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=39.82 E-value=46 Score=33.33 Aligned_cols=43 Identities=7% Similarity=0.021 Sum_probs=31.1
Q ss_pred CCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCC
Q 009441 482 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527 (534)
Q Consensus 482 ~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg 527 (534)
..+..+..++++.||.+|.+....+.+. ..+.|+||++||..+
T Consensus 28 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~---~~~~~~VvllHG~~~ 70 (330)
T PLN02298 28 KGIKGSKSFFTSPRGLSLFTRSWLPSSS---SPPRALIFMVHGYGN 70 (330)
T ss_pred cCCccccceEEcCCCCEEEEEEEecCCC---CCCceEEEEEcCCCC
Confidence 3445567778889999999987766532 135689999999743
No 266
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.36 E-value=47 Score=35.95 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=28.9
Q ss_pred EEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc
Q 009441 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232 (534)
Q Consensus 194 ~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~ 232 (534)
....|-|||+.||++... | +|.+.|+++|..+..
T Consensus 66 ~sL~W~~DGkllaVg~kd-G----~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 66 ASLCWRPDGKLLAVGFKD-G----TIRLHDVEKGGRLVS 99 (665)
T ss_pred eeeeecCCCCEEEEEecC-C----eEEEEEccCCCceec
Confidence 467899999999999885 4 799999999987654
No 267
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.03 E-value=65 Score=35.50 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=36.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc---ccCCccceeEEccCCeEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALV 250 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~---~i~~~~~~~~Ws~Dg~l~ 250 (534)
-|..+.++++..+||-+ .-..+|.+||++.++.+.. ...++. .+.|.|-+.|+
T Consensus 72 pIeSl~f~~~E~Llaag-----sasgtiK~wDleeAk~vrtLtgh~~~~~-sv~f~P~~~~~ 127 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAG-----SASGTIKVWDLEEAKIVRTLTGHLLNIT-SVDFHPYGEFF 127 (825)
T ss_pred cceeeecCcchhhhccc-----ccCCceeeeehhhhhhhhhhhccccCcc-eeeeccceEEe
Confidence 47788999999988864 3335899999999887652 112233 37788877443
No 268
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.78 E-value=4.8e+02 Score=27.27 Aligned_cols=149 Identities=13% Similarity=0.160 Sum_probs=75.7
Q ss_pred eEEccCC-eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCC
Q 009441 241 VEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 319 (534)
Q Consensus 241 ~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~ 319 (534)
++|...- .++.+.. -...|..|++.++.....+-...+ . .-.+.|-+..-.+++. ++ ....|-+.|++.+
T Consensus 249 Ls~n~~~~nVLaSgs----aD~TV~lWD~~~g~p~~s~~~~~k--~-Vq~l~wh~~~p~~LLs-Gs-~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGS----ADKTVKLWDVDTGKPKSSITHHGK--K-VQTLEWHPYEPSVLLS-GS-YDGTVALKDCRDP 319 (463)
T ss_pred HHhccccceeEEecC----CCceEEEEEcCCCCcceehhhcCC--c-eeEEEecCCCceEEEe-cc-ccceEEeeeccCc
Confidence 4454443 4544432 123566667766543222221211 1 1123444433333332 11 2234566677643
Q ss_pred C----ceeEeeeccccee-EEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceE-EecCCCCceeeeEEEeC--CEEE
Q 009441 320 E----ELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFI--DHLA 391 (534)
Q Consensus 320 ~----~~~~l~~~~~g~~-~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~-li~~~~~~~l~~~~~~~--~~lv 391 (534)
. .|+ ...+++ ..+.|.....++.+.. ++.|.-+|..+++..-| +.+++. .|.++.... ..++
T Consensus 320 ~~s~~~wk----~~g~VEkv~w~~~se~~f~~~td----dG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 320 SNSGKEWK----FDGEVEKVAWDPHSENSFFVSTD----DGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLL 389 (463)
T ss_pred cccCceEE----eccceEEEEecCCCceeEEEecC----CceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcce
Confidence 3 232 112233 2366666655555543 36788889887766678 666654 488887754 4666
Q ss_pred EEEeeCCeeEEEEEECC
Q 009441 392 VYEREGGLQKITTYRLP 408 (534)
Q Consensus 392 ~~~~~~g~~~l~~~~l~ 408 (534)
.+...++.-.|+-++.+
T Consensus 390 ~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVD 406 (463)
T ss_pred eeccccceEEEEeecCC
Confidence 66766666666655444
No 269
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.52 E-value=37 Score=29.11 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=36.1
Q ss_pred CcccccCCCCCHH-----HHHHHHHHHHHHHHHhcCChHhHHHHHHHHhhcccC
Q 009441 73 YYWLRDDSRSDPE-----VLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQ 121 (534)
Q Consensus 73 Y~WLed~~~~~~~-----v~~~l~~en~~t~~~l~~~~~~~~~l~~e~~~~~~~ 121 (534)
.+++++.. ||+ ..+-+.++|+++.--+..++.+|+.|.+||.+-+++
T Consensus 69 l~yID~Gr--NPDiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe 120 (128)
T PF09748_consen 69 LEYIDDGR--NPDIYTREFVELVRRENQYVKGKMEAFKSFRDVLAEELASAFPE 120 (128)
T ss_pred HHHHhCCC--CchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 34555555 664 345556899999999999999999999999876654
No 270
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=38.48 E-value=3.3e+02 Score=28.49 Aligned_cols=94 Identities=21% Similarity=0.188 Sum_probs=54.8
Q ss_pred eeEEEEEeCCCCCceeEeeecccce-eEEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceE----EecCCCCceeee
Q 009441 308 TRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV----LIPHRESVKLQD 382 (534)
Q Consensus 308 ~~ev~~~d~~~~~~~~~l~~~~~g~-~~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~----li~~~~~~~l~~ 382 (534)
.+.+|++|-+..- .-.++.-..|. .|.+.-.|+.+|++|-+. . --|+.+|+.+|+..+. -||. ....+
T Consensus 405 ~N~vYilDe~lnv-vGkltGl~~gERIYAvRf~gdv~yiVTfrq-t--DPlfviDlsNPenPkvlGeLKIPG-fS~YL-- 477 (603)
T COG4880 405 VNAVYILDENLNV-VGKLTGLAPGERIYAVRFVGDVLYIVTFRQ-T--DPLFVIDLSNPENPKVLGELKIPG-FSEYL-- 477 (603)
T ss_pred cceeEEEcCCCcE-EEEEeccCCCceEEEEEEeCceEEEEEEec-c--CceEEEEcCCCCCCceeEEEecCC-chhhc--
Confidence 4789999865421 12233333333 366778899999999873 2 2478889988764332 1221 11111
Q ss_pred EEEe-CCEEEEEEeeCCeeEEEEEECCC
Q 009441 383 IQLF-IDHLAVYEREGGLQKITTYRLPA 409 (534)
Q Consensus 383 ~~~~-~~~lv~~~~~~g~~~l~~~~l~~ 409 (534)
... ++.++=....+|.-+|..++...
T Consensus 478 -Hpigen~~lGvG~~~g~vKiSLFdiSd 504 (603)
T COG4880 478 -HPIGENRLLGVGAYQGGVKISLFDISD 504 (603)
T ss_pred -cccCCCcEEEeecccCCceEEEEeccC
Confidence 112 34455556667878888888763
No 271
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=37.60 E-value=3.9e+02 Score=29.01 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.6
Q ss_pred EEEEEEcCCCcEEEEEec
Q 009441 287 SLGLQASESKKFLFIASE 304 (534)
Q Consensus 287 ~v~~~~S~Dg~~l~i~~~ 304 (534)
+.++.+|||++.|++++.
T Consensus 504 ~tG~~fspDg~tlFvniQ 521 (524)
T PF05787_consen 504 ITGPCFSPDGRTLFVNIQ 521 (524)
T ss_pred cccceECCCCCEEEEEEe
Confidence 446788999999998764
No 272
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.94 E-value=6.3e+02 Score=27.82 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=85.2
Q ss_pred CCeEEEEEEEECCCCCeecc--ccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEEEE
Q 009441 213 GDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 290 (534)
Q Consensus 213 G~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~ 290 (534)
|++..+|+|++..|++.+.. .-+...-.++=.|.--++.++.|+- --++|-+.-+-. -..+|++ ...|.+.+
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm--~iKlW~we~~wa---~~qtfeG-H~HyVMqv 146 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDM--TIKLWDWENEWA---CEQTFEG-HEHYVMQV 146 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCcc--EEEEeeccCcee---eeeEEcC-cceEEEEE
Confidence 67789999999999986542 1111111244445542333433331 124454443322 2456765 34566677
Q ss_pred EEcCCCcEEEEEecCcceeEEEEEeCCCCCceeEeeecccceeEE-EeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCce
Q 009441 291 QASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA-ASHRGNHFFITRRSDELFNSELLACPVDNTSETT 369 (534)
Q Consensus 291 ~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~~~~~l~~~~~g~~~~-v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~ 369 (534)
.+-|...--+..+.=..+-.||-+-...+. ..+.....|+.+- .-+.|+.=|++|..+ ..-+-..|..+.....
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~n--fTl~gHekGVN~Vdyy~~gdkpylIsgaD---D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSPHPN--FTLEGHEKGVNCVDYYTGGDKPYLISGAD---DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCCCCc--eeeeccccCcceEEeccCCCcceEEecCC---CceEEEeecchHHHHH
Confidence 776644443443333334456655433332 2333444454432 236788889998753 2333334443211000
Q ss_pred EEecCCCCceeeeEEEeCC-EEEEEEeeCCeeEEE
Q 009441 370 VLIPHRESVKLQDIQLFID-HLAVYEREGGLQKIT 403 (534)
Q Consensus 370 ~li~~~~~~~l~~~~~~~~-~lv~~~~~~g~~~l~ 403 (534)
.+. +.-..+..+...+. -|+++..++|.-+|+
T Consensus 222 -TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 222 -TLE-GHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred -Hhh-cccccceEEEecCCCcEEEEecCCccEEEe
Confidence 111 11112333333332 466677777765554
No 273
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=35.50 E-value=8.4e+02 Score=29.14 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=32.8
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec-cccCCccceeEEccCC-eEEEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNE-ALVYIT 253 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~-~~i~~~~~~~~Ws~Dg-~l~Y~~ 253 (534)
.|.++.+--|+.-|.++.. .| .|.+.|.+++..-. ..+++.....+|+||+ .+...+
T Consensus 70 ~i~s~~fl~d~~~i~v~~~-~G----~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT 128 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITA-LG----DIILVDPETLELEIVGNVDNGISAASWSPDEELLALIT 128 (1265)
T ss_pred ceEEEEEecccceEEEEec-CC----cEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEe
Confidence 3555566666666666544 23 35555777764321 1334333458899998 666655
No 274
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=35.09 E-value=38 Score=34.74 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=16.0
Q ss_pred EEEEE-eCCCCCCCCCCcEEEEEcCC
Q 009441 501 ICIVY-RKNLVKLDGSDPLLLYGYGS 525 (534)
Q Consensus 501 ~~lv~-~k~~~~~~~~~P~lL~gYGg 525 (534)
.||+. |.+. ++ +.-|+|+|.|||
T Consensus 108 ~Wlvk~P~~~-~p-k~DpVlIYlHGG 131 (374)
T PF10340_consen 108 YWLVKAPNRF-KP-KSDPVLIYLHGG 131 (374)
T ss_pred EEEEeCCccc-CC-CCCcEEEEEcCC
Confidence 56776 5554 33 345999999987
No 275
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=34.85 E-value=1.2e+02 Score=19.33 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=18.5
Q ss_pred CCCCEEEEEEcCCCCeEEEEEEEECCCCCeec
Q 009441 200 PDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 231 (534)
Q Consensus 200 PDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~ 231 (534)
|||++|..+ +.+++ +|.++|+.+++.+.
T Consensus 1 pd~~~lyv~-~~~~~---~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLYVT-NSGSN---TVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEEEE-eCCCC---EEEEEECCCCeEEE
Confidence 678876544 43332 67788998887654
No 276
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=34.65 E-value=2.7e+02 Score=30.30 Aligned_cols=112 Identities=12% Similarity=0.141 Sum_probs=66.4
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCCccceeEEccCC-eEEEEEECCCCCCceEEEeec
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~~l 268 (534)
.|..+.|.-+|+|||-..-.+|+ ..+.|..|..++.+.- ...+....+.|.|-. .||..+. + .|..+++
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~--~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq----~--~vRiYdL 594 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGN--KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ----R--SVRIYDL 594 (733)
T ss_pred ccceeeeecCCceEEEeccCCCc--ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec----c--ceEEEeh
Confidence 46778999999999998887776 4666777765554321 223444557888887 5555442 2 3444555
Q ss_pred CCCCCCceEeee-ecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 269 EADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 269 gt~~~~d~lv~~-e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
-.. ++|-. .++..+.-.+++.+.|.-|++.+.. ..+...|++-
T Consensus 595 ~kq----elvKkL~tg~kwiS~msihp~GDnli~gs~d---~k~~WfDldl 638 (733)
T KOG0650|consen 595 SKQ----ELVKKLLTGSKWISSMSIHPNGDNLILGSYD---KKMCWFDLDL 638 (733)
T ss_pred hHH----HHHHHHhcCCeeeeeeeecCCCCeEEEecCC---CeeEEEEccc
Confidence 431 12211 1122333357889999888875543 3445555544
No 277
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=33.82 E-value=2.4e+02 Score=22.42 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=25.2
Q ss_pred ceEEEeecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEe
Q 009441 261 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIAS 303 (534)
Q Consensus 261 ~~v~~~~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~ 303 (534)
-++++++..|++ -.++.++- .|--+++.|+|+.++++.-
T Consensus 37 GRll~ydp~t~~--~~vl~~~L--~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 37 GRLLRYDPSTKE--TTVLLDGL--YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp EEEEEEETTTTE--EEEEEEEE--SSEEEEEE-TTSSEEEEEE
T ss_pred cCEEEEECCCCe--EEEehhCC--CccCeEEEcCCCCEEEEEe
Confidence 479999988863 23443321 1223689999999998854
No 278
>PLN00021 chlorophyllase
Probab=33.79 E-value=86 Score=31.45 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEE--EEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCc
Q 009441 479 FDTNNYFTERKW--ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEV 528 (534)
Q Consensus 479 ~d~~~~~~e~v~--~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~ 528 (534)
|+.-.+.+.... +.+.-...+|+.|+.|..- ++.|+||+.||..+.
T Consensus 17 ~~~g~~~~~~~~~~~~~~~~~~~p~~v~~P~~~----g~~PvVv~lHG~~~~ 64 (313)
T PLN00021 17 FETGKFPVELITVDESSRPSPPKPLLVATPSEA----GTYPVLLFLHGYLLY 64 (313)
T ss_pred cccCCceeEEEEecCCCcCCCCceEEEEeCCCC----CCCCEEEEECCCCCC
Confidence 444444444333 2223346899999998743 678999999998654
No 279
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=33.65 E-value=5.4e+02 Score=26.38 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=37.9
Q ss_pred eeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCCCceeeeEEEeCCEEEEEEeeCCeeEEEEEECCCCCCcc
Q 009441 338 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPL 414 (534)
Q Consensus 338 ~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~~l~~~g~~~ 414 (534)
..++.+|+.+. ++.|+.+|.++++ ..|-.... ........+.++.+++... +| .|+.++..+ |+.+
T Consensus 118 v~~~~v~v~~~-----~g~l~ald~~tG~-~~W~~~~~-~~~~ssP~v~~~~v~v~~~-~g--~l~ald~~t-G~~~ 183 (394)
T PRK11138 118 VAGGKVYIGSE-----KGQVYALNAEDGE-VAWQTKVA-GEALSRPVVSDGLVLVHTS-NG--MLQALNESD-GAVK 183 (394)
T ss_pred EECCEEEEEcC-----CCEEEEEECCCCC-CcccccCC-CceecCCEEECCEEEEECC-CC--EEEEEEccC-CCEe
Confidence 45788887543 2578999987654 45732221 1123334445666666432 33 688888876 7743
No 280
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.31 E-value=4.5e+02 Score=25.29 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=35.0
Q ss_pred CCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCCeEEEEE
Q 009441 187 GRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYIT 253 (534)
Q Consensus 187 ~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg~l~Y~~ 253 (534)
++|+- +-....|-|...+|- -+|+ -.+.+||++||+.+.. ..+ -...+.|..+..+.+..
T Consensus 57 ghG~E-VlD~~~s~Dnskf~s---~GgD--k~v~vwDV~TGkv~Rr-~rgH~aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 57 GHGHE-VLDAALSSDNSKFAS---CGGD--KAVQVWDVNTGKVDRR-FRGHLAQVNTVRFNEESSVVASG 119 (307)
T ss_pred CCCce-eeecccccccccccc---CCCC--ceEEEEEcccCeeeee-cccccceeeEEEecCcceEEEec
Confidence 44543 333456667666653 1333 5789999999998752 222 13447776555665553
No 281
>KOG4328 consensus WD40 protein [Function unknown]
Probab=32.85 E-value=6.1e+02 Score=26.71 Aligned_cols=155 Identities=12% Similarity=0.126 Sum_probs=83.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-cc--CC-ccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL--VG-VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i--~~-~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
.|+.+.+||...--.|+.+-+| +|+..|++++..-.. .. .+ .++.+.++.+. .+++... -+ ...++-+
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~--~G-~f~~iD~ 308 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN--VG-NFNVIDL 308 (498)
T ss_pred cccceEecCCChhheeeeccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec--cc-ceEEEEe
Confidence 4788999998888888888777 689999987642110 12 22 24456666665 4544431 11 3456655
Q ss_pred ecCCCCCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC-ce-eEeeecccce-eEEEeeeCCEE
Q 009441 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-EL-RVLTPRVVGV-DTAASHRGNHF 343 (534)
Q Consensus 267 ~lgt~~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~-~~-~~l~~~~~g~-~~~v~~~g~~l 343 (534)
+.+...-+...+. +. -.-++++-|-..|.+++++...+-.||=+.--.++ .+ .-..+....+ ..++++.++.
T Consensus 309 R~~~s~~~~~~lh-~k---KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt- 383 (498)
T KOG4328|consen 309 RTDGSEYENLRLH-KK---KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT- 383 (498)
T ss_pred ecCCccchhhhhh-hc---ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-
Confidence 5543211111121 11 12346788989998888776666666644322222 21 1112221112 3558898998
Q ss_pred EEEEcCCCCCccEEEEE
Q 009441 344 FITRRSDELFNSELLAC 360 (534)
Q Consensus 344 yi~tn~~~~~~~~L~~~ 360 (534)
++|+. ...+-+|+-.
T Consensus 384 -l~TT~-~D~~IRv~ds 398 (498)
T KOG4328|consen 384 -LLTTC-QDNEIRVFDS 398 (498)
T ss_pred -eEeec-cCCceEEeec
Confidence 44443 2244566544
No 282
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=32.32 E-value=88 Score=33.62 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=25.7
Q ss_pred CcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCC
Q 009441 189 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228 (534)
Q Consensus 189 ~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~ 228 (534)
...++.+++++.||=.+|++.+.+ .++|+||.+.+
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G-----~v~iyDLRa~~ 261 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTG-----SVLIYDLRASK 261 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCC-----cEEEEEcccCC
Confidence 355789999999999999988753 35556655444
No 283
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=32.04 E-value=1.2e+02 Score=33.98 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=36.7
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCe--eccccCCccceeEEccCCeEEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP--VGKPLVGVTASVEWAGNEALVYI 252 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~--~~~~i~~~~~~~~Ws~Dg~l~Y~ 252 (534)
.|....+|+||.+|.= |.....+.+|-++|++. ++ .+....-.+.|+||+.+|-+
T Consensus 253 ~V~~L~fS~~G~~LlS-----GG~E~VLv~Wq~~T~~kqfLP-RLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS-----GGREGVLVLWQLETGKKQFLP-RLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred ccceeEEecCCceEee-----cccceEEEEEeecCCCccccc-ccCCeeEEEEEcCCCCeEEE
Confidence 4778899999987752 44457899999999872 22 22222334889999844333
No 284
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=31.74 E-value=5.3e+02 Score=25.64 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=56.6
Q ss_pred CCeEEEEEEEECCCCCeecc-ccCCccceeEEccCC---eEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCceEE
Q 009441 213 GDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE---ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSL 288 (534)
Q Consensus 213 G~E~~~l~v~dl~tg~~~~~-~i~~~~~~~~Ws~Dg---~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~~v 288 (534)
++=.-+|.|||..|-+...+ ..++....-+|+|=. .+.-+.. |..+|..-++.++.-. ..+-+.. +-.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt----r~~~VrLCDi~SGs~s-H~LsGHr--~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT----RDVQVRLCDIASGSFS-HTLSGHR--DGVL 192 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec----CCCcEEEEeccCCcce-eeecccc--CceE
Confidence 45457899999988765443 455543347888765 3333332 3346666677665322 2222211 2245
Q ss_pred EEEEcCCCcEEEEEecCcceeEEEEEe
Q 009441 289 GLQASESKKFLFIASESKITRFVFYLD 315 (534)
Q Consensus 289 ~~~~S~Dg~~l~i~~~~~~~~ev~~~d 315 (534)
.+.|||...|++.+.+....-.+|-+.
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIR 219 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEee
Confidence 678999999998876655555555444
No 285
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=31.05 E-value=3.9e+02 Score=28.31 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=32.4
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECC-------CC-----CeeccccCCccceeEEccCCeEEEEEECCCCC
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-------TG-----TPVGKPLVGVTASVEWAGNEALVYITMDEILR 259 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~-------tg-----~~~~~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r 259 (534)
.+..+.||+||+++|+..+. ...|.-++.+ .| +.+.+.-..+. +..|..| -|+|++.
T Consensus 146 ~vk~V~Ws~~g~~val~t~~----~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~Ik-Sg~W~~d-~fiYtT~----- 214 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKD----SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIK-SGCWVED-CFIYTTS----- 214 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S-----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--S-EEEEETT-EEEEE-T-----
T ss_pred CCcEEEEECCCCEEEEEeCC----eEEEEEecchhcccccccCchhceEEEEEecceeE-EEEEEcC-EEEEEcC-----
Confidence 36788999999999998542 2333334444 11 11111112333 4789766 8999873
Q ss_pred CceEEE
Q 009441 260 PDKAWL 265 (534)
Q Consensus 260 ~~~v~~ 265 (534)
.++.+
T Consensus 215 -~~lkY 219 (443)
T PF04053_consen 215 -NHLKY 219 (443)
T ss_dssp -TEEEE
T ss_pred -CeEEE
Confidence 26766
No 286
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=30.69 E-value=5.7e+02 Score=25.69 Aligned_cols=113 Identities=14% Similarity=0.234 Sum_probs=62.5
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec--ccc---CCccceeEEccCC-eEEEEEECCCCCCceEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~--~~i---~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~ 265 (534)
.|...+|++|+..+|.+-. ..+++|+...++..-. .++ .....++.|+|.+ +|.=-..| |..-||
T Consensus 12 pitchAwn~drt~iAv~~~-----~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~d---rnayVw- 82 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPN-----NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD---RNAYVW- 82 (361)
T ss_pred ceeeeeecCCCceEEeccC-----CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCC---CCcccc-
Confidence 4677899999999998654 2357777776665221 112 2234559999988 77544433 233344
Q ss_pred eecCCC-CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeC
Q 009441 266 HKLEAD-QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (534)
Q Consensus 266 ~~lgt~-~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~ 316 (534)
..+.+ .-..+++.-+-|.. -..+.|+|.+.-+++.+....-+ |++..-
T Consensus 83 -~~~~~~~WkptlvLlRiNrA-At~V~WsP~enkFAVgSgar~is-Vcy~E~ 131 (361)
T KOG1523|consen 83 -TQPSGGTWKPTLVLLRINRA-ATCVKWSPKENKFAVGSGARLIS-VCYYEQ 131 (361)
T ss_pred -ccCCCCeeccceeEEEeccc-eeeEeecCcCceEEeccCccEEE-EEEEec
Confidence 33221 12334444333322 12367899887777665544333 344433
No 287
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=30.46 E-value=1.6e+02 Score=31.67 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=47.0
Q ss_pred EEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc----ccCCccceeEEccCC--eEEEEEECCCCCCceEEE
Q 009441 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PLVGVTASVEWAGNE--ALVYITMDEILRPDKAWL 265 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~----~i~~~~~~~~Ws~Dg--~l~Y~~~d~~~r~~~v~~ 265 (534)
-|....|+-||.+|| .|++.+.+.|||.-.-+.+.. ...++|+ +.|.|-. .+..+...+ ..|+.
T Consensus 52 CVN~LeWn~dG~lL~-----SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFs-vKFvP~tnnriv~sgAgD----k~i~l 121 (758)
T KOG1310|consen 52 CVNCLEWNADGELLA-----SGSDDTRLIVWDPFEYKLLHSISTGHTANIFS-VKFVPYTNNRIVLSGAGD----KLIKL 121 (758)
T ss_pred eecceeecCCCCEEe-----ecCCcceEEeecchhcceeeeeecccccceeE-EeeeccCCCeEEEeccCc----ceEEE
Confidence 467789999999998 578889999999886666532 2234555 7777753 676665321 35777
Q ss_pred eecC
Q 009441 266 HKLE 269 (534)
Q Consensus 266 ~~lg 269 (534)
|++.
T Consensus 122 fdl~ 125 (758)
T KOG1310|consen 122 FDLD 125 (758)
T ss_pred Eecc
Confidence 7765
No 288
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=30.33 E-value=45 Score=27.80 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=13.6
Q ss_pred EEECCCCCEEEEEEcC
Q 009441 196 FQVSPDNKLVAYAEDT 211 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~ 211 (534)
-.|||||++|.|+...
T Consensus 73 HvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 73 HVFSPDGSWLSFTYND 88 (122)
T ss_pred eEECCCCCEEEEEecc
Confidence 3699999999999763
No 289
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=30.09 E-value=47 Score=26.56 Aligned_cols=15 Identities=53% Similarity=0.742 Sum_probs=12.3
Q ss_pred EEECCCCCEEEEEEc
Q 009441 196 FQVSPDNKLVAYAED 210 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d 210 (534)
=.+|||||+++|--+
T Consensus 18 Gefs~DGkLv~Ykgd 32 (109)
T COG4831 18 GEFSPDGKLVEYKGD 32 (109)
T ss_pred ceeCCCCceEEeeCC
Confidence 379999999999643
No 290
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=29.80 E-value=50 Score=35.34 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=18.2
Q ss_pred cEEEEEeCCCCCCCCCCcEEEEEcCCC
Q 009441 500 PICIVYRKNLVKLDGSDPLLLYGYGSY 526 (534)
Q Consensus 500 P~~lv~~k~~~~~~~~~P~lL~gYGgy 526 (534)
.+.|..|.+. ..+++.|+||++|||.
T Consensus 80 ~l~i~~p~~~-~~~~~~pv~v~ihGG~ 105 (493)
T cd00312 80 YLNVYTPKNT-KPGNSLPVMVWIHGGG 105 (493)
T ss_pred eEEEEeCCCC-CCCCCCCEEEEEcCCc
Confidence 3455556654 3456789999999984
No 291
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.69 E-value=52 Score=36.20 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=28.8
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 231 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~ 231 (534)
..+...++||||+++|- |.|..++.|+|+..|+.+.
T Consensus 155 ~vv~~l~lsP~Gr~v~~-----g~ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVAS-----GGEDNTVKIWDLTAGKLSK 190 (825)
T ss_pred ceeEEEeecCCCceeec-----cCCcceeeeeccccccccc
Confidence 34667799999999884 5556799999998888764
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=29.44 E-value=1.3e+02 Score=33.78 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=55.3
Q ss_pred CCeEEEEEEEECCCCCeecc-cc-CCccceeEEccCC---eEEEEEECCC--CCCceEEEeecCCCCCCceEeeeecCCc
Q 009441 213 GDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE---ALVYITMDEI--LRPDKAWLHKLEADQSNDICLYHEKDDI 285 (534)
Q Consensus 213 G~E~~~l~v~dl~tg~~~~~-~i-~~~~~~~~Ws~Dg---~l~Y~~~d~~--~r~~~v~~~~lgt~~~~d~lv~~e~d~~ 285 (534)
|.+..++.|+|+.++..-.+ .+ +...-+++|.... .|-|.+.... .-.+++...++.|+.+...-..+++|..
T Consensus 443 GT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~des 522 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDES 522 (1062)
T ss_pred ecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcC
Confidence 55567899999999876443 22 2233459998765 4555543332 2234677777777754433333344433
Q ss_pred eEEEEEEcCCCcEEEEEec
Q 009441 286 YSLGLQASESKKFLFIASE 304 (534)
Q Consensus 286 ~~v~~~~S~Dg~~l~i~~~ 304 (534)
-.--+..|..|+|+.|.-.
T Consensus 523 pI~~irvS~~~~yLai~Fr 541 (1062)
T KOG1912|consen 523 PIRAIRVSSSGRYLAILFR 541 (1062)
T ss_pred cceeeeecccCceEEEEec
Confidence 3334678999999987643
No 293
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=28.91 E-value=1.2e+02 Score=33.28 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.0
Q ss_pred EEEEEEEECCCCCEEEEE
Q 009441 191 YSVGCFQVSPDNKLVAYA 208 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~ 208 (534)
..|..+.|||||++|+=+
T Consensus 573 LTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred eEEEEEEECCCCcEEEEe
Confidence 467889999999988754
No 294
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=28.71 E-value=1.2e+02 Score=30.54 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=29.1
Q ss_pred CcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCC
Q 009441 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527 (534)
Q Consensus 483 ~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg 527 (534)
.+..+..+..+.||.+|.+....|.+- .+.|+||+.||.-+
T Consensus 58 ~~~~~~~~~~~~~g~~l~~~~~~p~~~----~~~~~iv~lHG~~~ 98 (349)
T PLN02385 58 GIKTEESYEVNSRGVEIFSKSWLPENS----RPKAAVCFCHGYGD 98 (349)
T ss_pred CcceeeeeEEcCCCCEEEEEEEecCCC----CCCeEEEEECCCCC
Confidence 344455566778999998887777642 35689999999544
No 295
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=28.70 E-value=7.1e+02 Score=26.21 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=43.4
Q ss_pred EEEEEEECCCCCeec--cccCCccceeEEccCCeEEEEEECCCCCCceEEEeecCCCCCCceEeeeecCCce-EE-EEEE
Q 009441 217 YTVYVIDIETGTPVG--KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIY-SL-GLQA 292 (534)
Q Consensus 217 ~~l~v~dl~tg~~~~--~~i~~~~~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~d~~~-~v-~~~~ 292 (534)
-.|+++.+....... ..+++....++=+|+|.|++... ...++|+|.+.++. ++.-- ...| .+ -+.+
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~----i~g~lYlWelssG~----LL~v~-~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGT----ISGNLYLWELSSGI----LLNVL-SAHYQSITCLKF 131 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeeecCCCceEEEeec----ccCcEEEEEecccc----HHHHH-HhhccceeEEEE
Confidence 378888775433222 25677655677788886655542 12479999998873 32110 1111 12 3567
Q ss_pred cCCCcEEE
Q 009441 293 SESKKFLF 300 (534)
Q Consensus 293 S~Dg~~l~ 300 (534)
|.||.+++
T Consensus 132 s~dgs~ii 139 (476)
T KOG0646|consen 132 SDDGSHII 139 (476)
T ss_pred eCCCcEEE
Confidence 88888765
No 296
>PLN02872 triacylglycerol lipase
Probab=28.03 E-value=1e+02 Score=32.11 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=33.3
Q ss_pred CCCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCCc
Q 009441 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEV 528 (534)
Q Consensus 481 ~~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg~ 528 (534)
...|.+|+..+++.||-.+-+.=+.+..-.....+.|.+|..||..+.
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~s 86 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMA 86 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCccccc
Confidence 447889999999999998887665433210112346889999997643
No 297
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=27.78 E-value=4.1e+02 Score=26.30 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=51.4
Q ss_pred EEEEEEECC--CCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCcc----ceeEEccCC-eEEEEEECCCCCCceEE
Q 009441 192 SVGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVT----ASVEWAGNE-ALVYITMDEILRPDKAW 264 (534)
Q Consensus 192 ~l~~~~~SP--DG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~----~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~ 264 (534)
.+.+-+||| ||..+|-+.+ .+++.+|+.|.+..- .|+++. -.+.+.|+- .++-+.-|+. .|.
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d------~tl~~~D~RT~~~~~-sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg----yvr 240 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSD------STLQFWDLRTMKKNN-SIEDAHGQRVRDLDFNPNKQHILVTCGDDG----YVR 240 (370)
T ss_pred eecccccCCCCccceEEEeCC------CcEEEEEccchhhhc-chhhhhcceeeeccCCCCceEEEEEcCCCc----cEE
Confidence 445557887 8899887654 368889988764321 344432 235566665 4444433321 233
Q ss_pred EeecCCCCCCceEeeeecC-CceEEEEEEcCCCcEEEEEecC
Q 009441 265 LHKLEADQSNDICLYHEKD-DIYSLGLQASESKKFLFIASES 305 (534)
Q Consensus 265 ~~~lgt~~~~d~lv~~e~d-~~~~v~~~~S~Dg~~l~i~~~~ 305 (534)
.++.... ...|++-.+ ..|...+.+-+-...|+++.++
T Consensus 241 iWD~R~t---k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 241 IWDTRKT---KFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred EEeccCC---CccccccCCCceEEEEEEecCccceEEEecCC
Confidence 3443322 112343222 2233345566666666665443
No 298
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=27.43 E-value=9.3e+02 Score=27.13 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=35.4
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCc-cceeEEccCC
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE 247 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~-~~~~~Ws~Dg 247 (534)
..+.+++|.-||..|++.... |. +.|=.+++++.....+++. .+.+.|++|.
T Consensus 116 SvV~SmsWn~dG~kIcIvYeD-Ga----vIVGsvdGNRIwgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 116 SVVVSMSWNLDGTKICIVYED-GA----VIVGSVDGNRIWGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred cEEEEEEEcCCCcEEEEEEcc-CC----EEEEeeccceecchhcchheccceeecccH
Confidence 357788999999999988764 32 4455566655554445553 3458898886
No 299
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=1.6e+02 Score=34.26 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=44.1
Q ss_pred CCceEEeecchhcCCCCc------EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCC-c-cceeE
Q 009441 173 PPEHLILDENVKAEGRGF------YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVG-V-TASVE 242 (534)
Q Consensus 173 ~~eevllD~n~~a~~~~~------~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~-~-~~~~~ 242 (534)
.+|-.+.|.|.+.....+ -.|..++|.-.-.+|.-+.. ......|||+...+.+-. ...+ . .+.++
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s----~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS----PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLA 213 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC----CCCCceeccccCCCcccccccCCCccceeeee
Confidence 355778898886543211 12444445444444444333 334678899987765432 1122 2 46799
Q ss_pred EccCC-eEEEEEECC
Q 009441 243 WAGNE-ALVYITMDE 256 (534)
Q Consensus 243 Ws~Dg-~l~Y~~~d~ 256 (534)
|.||+ +-..+..++
T Consensus 214 WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGD 228 (1049)
T ss_pred eCCCCceeeeeecCC
Confidence 99998 444444443
No 300
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=26.62 E-value=7.5e+02 Score=25.90 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=32.3
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCC-eE
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-AL 249 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg-~l 249 (534)
+.+.-=|.+|+.-+-.=-.+.+.-.|++..+++... +..+..+..-.|++ ++
T Consensus 232 i~yA~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R--~Daig~acv~LPedqGi 284 (448)
T PF12458_consen 232 IAYARVGNLILLRIRPYREEEWRYLVFNTRTKKVVR--LDAIGQACVRLPEDQGI 284 (448)
T ss_pred eeeeecCcEEEEEeccCCCcceeEEEEecccceEEE--ecchhhhhhcCCccCce
Confidence 344455778888777766666788888888887764 33332223344554 44
No 301
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=26.59 E-value=58 Score=35.00 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=17.3
Q ss_pred cEEEEEeCCCCCCCCCCcEEEEEcCCC
Q 009441 500 PICIVYRKNLVKLDGSDPLLLYGYGSY 526 (534)
Q Consensus 500 P~~lv~~k~~~~~~~~~P~lL~gYGgy 526 (534)
-+.|..|++. ....+.|+++|+|||-
T Consensus 110 ~LnI~~P~~~-~~~~~lPV~v~ihGG~ 135 (535)
T PF00135_consen 110 YLNIYTPSNA-SSNSKLPVMVWIHGGG 135 (535)
T ss_dssp EEEEEEETSS-SSTTSEEEEEEE--ST
T ss_pred HHhhhhcccc-ccccccceEEEeeccc
Confidence 4556677776 4444799999999984
No 302
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=26.27 E-value=1.2e+02 Score=28.69 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=31.0
Q ss_pred CCcEEEEEEEEcCCCceecEEEEEeCCCCCCCCCCcEEEEEcCCCC
Q 009441 482 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527 (534)
Q Consensus 482 ~~~~~e~v~~~S~DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgyg 527 (534)
-++.-|++...++|-+++..|++... .+.|++||-||--|
T Consensus 50 ~n~pye~i~l~T~D~vtL~a~~~~~E------~S~pTlLyfh~NAG 89 (300)
T KOG4391|consen 50 FNMPYERIELRTRDKVTLDAYLMLSE------SSRPTLLYFHANAG 89 (300)
T ss_pred cCCCceEEEEEcCcceeEeeeeeccc------CCCceEEEEccCCC
Confidence 34566899999999999999998722 36789998887544
No 303
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=25.01 E-value=7.3e+02 Score=25.13 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=58.7
Q ss_pred CEEEEEEcCCCCeEEEEEEEECCCCCeecc--ccCCccceeEEccC-C-eEEEEEECCCCCCceEEEeecCCCCCCceEe
Q 009441 203 KLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGN-E-ALVYITMDEILRPDKAWLHKLEADQSNDICL 278 (534)
Q Consensus 203 ~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~--~i~~~~~~~~Ws~D-g-~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv 278 (534)
..+|.+.+. | .++++|..||+.+.+ ..+....++.++.+ + ...++..-+ -.|..|++.+.+...+..
T Consensus 41 ~~vav~lSn-g----sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD----G~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSN-G----SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD----GTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecC-C----eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccC----CeEEEEEeecchhhhhee
Confidence 667777773 3 599999999988764 22334456888764 5 666765322 145566665554445555
Q ss_pred eeecCCceEEEEEEcCCCcEEEEEe-cCcceeEEEEEeCCCC
Q 009441 279 YHEKDDIYSLGLQASESKKFLFIAS-ESKITRFVFYLDVSKP 319 (534)
Q Consensus 279 ~~e~d~~~~v~~~~S~Dg~~l~i~~-~~~~~~ev~~~d~~~~ 319 (534)
|+...+.-+..++.--.++.+...+ .......|++.|....
T Consensus 112 ~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~ 153 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE 153 (376)
T ss_pred ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence 6543323343344322333332222 1223345667776553
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.78 E-value=1.3e+03 Score=27.78 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=36.8
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec--cccCCccceeEEccCCe
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPLVGVTASVEWAGNEA 248 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~--~~i~~~~~~~~Ws~Dg~ 248 (534)
+.|--||+++|.+.-..+...-.|+|+|-+ |..-. ++..+....++|-|.|.
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs 254 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS 254 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC
Confidence 578899999999766655555789999987 54321 23344456699999883
No 305
>TIGR03277 methan_mark_9 putative methanogenesis marker domain 9. A gene for a protein that contains a copy of this domain, to date, is found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. A 69-amino acid core region of this 110-amino acid domain contains eight invariant Cys residues, including two copies of a motif [WFY]CCxxKPC. These motifs could be consistent with predicted metal-binding transcription factor as was suggested for the COG4008 family. Some members of this family have an additional N-terminal domain of about 250 amino acids from the nifR3 family of predicted TIM-barrel proteins.
Probab=24.74 E-value=26 Score=28.60 Aligned_cols=12 Identities=42% Similarity=1.210 Sum_probs=10.8
Q ss_pred ccccccceeecc
Q 009441 17 GWLNLPRVICSS 28 (534)
Q Consensus 17 ~~~~~~~~~~~~ 28 (534)
||.|-|+-|||-
T Consensus 1 gW~naP~hiCrg 12 (109)
T TIGR03277 1 GWYNAPSHVCRG 12 (109)
T ss_pred CCCCcchhhhcC
Confidence 899999999964
No 306
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=24.48 E-value=3.1e+02 Score=30.12 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=56.3
Q ss_pred eEEeecchhcCC---CC-cEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEc---cCC-
Q 009441 176 HLILDENVKAEG---RG-FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWA---GNE- 247 (534)
Q Consensus 176 evllD~n~~a~~---~~-~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws---~Dg- 247 (534)
-.|.||..-++- .| .-.|..+.+++||+.+.=+.+ ..+|++||+...+-+..-+ +.....|+ ..+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-----DgtIrlWdLgqQrCl~T~~--vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-----DGTIRLWDLGQQRCLATYI--VHKEGVWALQSSPSF 267 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC-----CceEEeeeccccceeeeEE--eccCceEEEeeCCCc
Confidence 355777653321 12 235778899999999875433 3589999997655433211 11112453 223
Q ss_pred eEEEEEECCCCCCceEEEeecCCCCCCceEeeeec
Q 009441 248 ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEK 282 (534)
Q Consensus 248 ~l~Y~~~d~~~r~~~v~~~~lgt~~~~d~lv~~e~ 282 (534)
..+|.. +|...||+-+|.+.+ +-++|+++.
T Consensus 268 ~~vYsG----~rd~~i~~Tdl~n~~-~~tlick~d 297 (735)
T KOG0308|consen 268 THVYSG----GRDGNIYRTDLRNPA-KSTLICKED 297 (735)
T ss_pred ceEEec----CCCCcEEecccCCch-hheEeecCC
Confidence 555654 345578888888763 456777653
No 307
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=24.22 E-value=8e+02 Score=25.28 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=13.6
Q ss_pred EEEEcCCCcEEEEEecC
Q 009441 289 GLQASESKKFLFIASES 305 (534)
Q Consensus 289 ~~~~S~Dg~~l~i~~~~ 305 (534)
+++.|+|+.++++.-..
T Consensus 223 GlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 223 GLALSPDGSFVLVAETT 239 (376)
T ss_pred cccCCCCCCEEEEEeec
Confidence 58899999998876443
No 308
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.21 E-value=7.2e+02 Score=24.73 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=56.6
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCccceeEEccCC--eEEEEEECCCCCCceEEEeecCCCCC
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE--ALVYITMDEILRPDKAWLHKLEADQS 273 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~~~~~~Ws~Dg--~l~Y~~~d~~~r~~~v~~~~lgt~~~ 273 (534)
...-+||++=+.+.+..|.- +.-. .++....+++++|-. .++|.+.+. .-.+.++..+.+
T Consensus 41 af~~~dgs~g~a~~~eaGk~---v~~~----------~lpaR~Hgi~~~p~~~ravafARrPG----tf~~vfD~~~~~- 102 (366)
T COG3490 41 AFDARDGSFGAATLSEAGKI---VFAT----------ALPARGHGIAFHPALPRAVAFARRPG----TFAMVFDPNGAQ- 102 (366)
T ss_pred eeeccCCceeEEEEccCCce---eeee----------ecccccCCeecCCCCcceEEEEecCC----ceEEEECCCCCc-
Confidence 35567888777777766631 1111 233333457777765 677766321 123444554443
Q ss_pred CceEeeeecCCceEEEEEEcCCCcEEEEEecCccee--EEEEEeCC
Q 009441 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITR--FVFYLDVS 317 (534)
Q Consensus 274 ~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~--ev~~~d~~ 317 (534)
+.+++-...+-.|+---.+|+||++|..+-|+...+ -|=+.|..
T Consensus 103 ~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 103 EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 233443333434544346799999998877765443 34444544
No 309
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.13 E-value=8.3e+02 Score=26.21 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=47.6
Q ss_pred ceeEEEEEeCCCCCceeEeeeccccee-EEEeeeCCEEEEEEcCCCCCccEEEEEeCCCCCCceEEecCCC-CceeeeEE
Q 009441 307 ITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE-SVKLQDIQ 384 (534)
Q Consensus 307 ~~~ev~~~d~~~~~~~~~l~~~~~g~~-~~v~~~g~~lyi~tn~~~~~~~~L~~~~~~~~~~~~~li~~~~-~~~l~~~~ 384 (534)
..++++++|..++. .+......++. +.+...++.|.++...+|....+|+.++..+-+. .-+.. ...-.++-
T Consensus 373 ~ls~LvllD~~tg~--~l~~S~~~~Ir~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev----~kes~~~i~~~S~l 446 (489)
T PF05262_consen 373 YLSELVLLDSDTGD--TLKRSPVNGIRGRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEV----KKESEDEISWQSSL 446 (489)
T ss_pred cceeEEEEeCCCCc--eecccccceeccceeEEcCCCEEEEeccCCchheEEEecCccccee----eeeccccccccCce
Confidence 34789999998864 11111112222 2233445555555543455566777766544322 22221 11112222
Q ss_pred -EeCCEEEEEE-eeCCeeEEEEEEC
Q 009441 385 -LFIDHLAVYE-REGGLQKITTYRL 407 (534)
Q Consensus 385 -~~~~~lv~~~-~~~g~~~l~~~~l 407 (534)
..++.+|+.. ..+|.-.|..|+-
T Consensus 447 ~~~~~~iyaVv~~~~g~~~L~rF~~ 471 (489)
T PF05262_consen 447 IVDGQMIYAVVKKDNGKWYLGRFDS 471 (489)
T ss_pred EEcCCeEEEEEEcCCCeEEEeecCc
Confidence 2355666566 6788777777754
No 310
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=23.44 E-value=7.5e+02 Score=24.65 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=61.5
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCC---ccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~---~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
+.+.++.|..++..+-- |.=...|.+||+..++.+- .+.+ ...++.-+++| .+.=..+|. .+..+
T Consensus 175 yqltAv~f~d~s~qv~s-----ggIdn~ikvWd~r~~d~~~-~lsGh~DtIt~lsls~~gs~llsnsMd~-----tvrvw 243 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVIS-----GGIDNDIKVWDLRKNDGLY-TLSGHADTITGLSLSRYGSFLLSNSMDN-----TVRVW 243 (338)
T ss_pred eeEEEEEecccccceee-----ccccCceeeeccccCcceE-EeecccCceeeEEeccCCCccccccccc-----eEEEE
Confidence 45666667666655432 2222468888886655432 1222 12346667887 444444443 33333
Q ss_pred ecCCC-CCCc-eEeeeecCCce---EEEEEEcCCCcEEEEEecCcceeEEEEEeCCC
Q 009441 267 KLEAD-QSND-ICLYHEKDDIY---SLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (534)
Q Consensus 267 ~lgt~-~~~d-~lv~~e~d~~~---~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~ 318 (534)
++.-- +++. +.||+...-.| .+..+|||+++++...+.++ .+|+.|...
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr---~vyvwd~~~ 297 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR---FVYVWDTTS 297 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc---eEEEeeccc
Confidence 33211 1233 67787655444 34568999999976544332 457777654
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.44 E-value=7.1e+02 Score=24.39 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=68.1
Q ss_pred CCCEEEEEEcCCCCeEEEEEEEECCCCCeecc-cc-CCccceeEEccCCeEEEEEECC-C------CCCceEEEeecCCC
Q 009441 201 DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDE-I------LRPDKAWLHKLEAD 271 (534)
Q Consensus 201 DG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~-~i-~~~~~~~~Ws~Dg~l~Y~~~d~-~------~r~~~v~~~~lgt~ 271 (534)
=|++++.+--.+| ||+++.+||+..-. .+ +.+.....-.+|+++.|....+ + .+...||.-+.|..
T Consensus 62 vgdfVV~GCy~g~-----lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~ 136 (354)
T KOG4649|consen 62 VGDFVVLGCYSGG-----LYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG 136 (354)
T ss_pred ECCEEEEEEccCc-----EEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc
Confidence 3666777665444 89999999954321 12 1122223334455444444321 1 12235777677654
Q ss_pred CCCceEeeeecCCceEEEEEEcCCCcEEEEEecCcceeEEEEEeCCCCC--ceeEeee-----cccceeEEEeeeCCEEE
Q 009441 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTP-----RVVGVDTAASHRGNHFF 344 (534)
Q Consensus 272 ~~~d~lv~~e~d~~~~v~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~~~~--~~~~l~~-----~~~g~~~~v~~~g~~ly 344 (534)
.-....+ .+.+...+ ..+-.|+.|.++.+....+++|......|- .+..+.+ -.+|+...+++.|..++
T Consensus 137 ~f~sP~i-~~g~~sly---~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvw 212 (354)
T KOG4649|consen 137 TFVSPVI-APGDGSLY---AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVW 212 (354)
T ss_pred eecccee-cCCCceEE---EEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEE
Confidence 2111122 12122222 224567777776666667888988776654 2233222 23344444555555554
No 312
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=23.24 E-value=1e+03 Score=26.25 Aligned_cols=110 Identities=12% Similarity=0.133 Sum_probs=55.6
Q ss_pred EEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCee------cccc--CCccceeEEccCC-eEEEEEECCCCCCceEEEe
Q 009441 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV------GKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (534)
Q Consensus 196 ~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~------~~~i--~~~~~~~~Ws~Dg-~l~Y~~~d~~~r~~~v~~~ 266 (534)
|.-.|+-++|.|..+..|. |.++|...-... .+.+ .++...++|.| | ..+.+... ...+..|
T Consensus 57 Fs~~~n~eHiLavadE~G~----i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasG----DsT~r~W 127 (720)
T KOG0321|consen 57 FSAAPNKEHILAVADEDGG----IILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASG----DSTIRPW 127 (720)
T ss_pred ccCCCCccceEEEecCCCc----eeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccC----Cceeeee
Confidence 4556788889988887774 666776654433 1111 23444589999 6 44444431 1234444
Q ss_pred ecCCCCCCce-EeeeecCCceEE-EEEEcCCCcEEEEEecCcceeEEEEEeCC
Q 009441 267 KLEADQSNDI-CLYHEKDDIYSL-GLQASESKKFLFIASESKITRFVFYLDVS 317 (534)
Q Consensus 267 ~lgt~~~~d~-lv~~e~d~~~~v-~~~~S~Dg~~l~i~~~~~~~~ev~~~d~~ 317 (534)
++.+..-... +.++. ...+ ++.+.++..-+|.+.......-||.+...
T Consensus 128 dvk~s~l~G~~~~~GH---~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGH---TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred eeccceeecceeeccc---ccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 5443311111 12211 1222 34566766666654444444445555443
No 313
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=22.95 E-value=2.8e+02 Score=21.42 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=32.5
Q ss_pred CCCcEEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeec
Q 009441 187 GRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 231 (534)
Q Consensus 187 ~~~~~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~ 231 (534)
..|| .+..+.+..||.|=+.+.+.+|. .+.++ +|..||+.+.
T Consensus 40 ~~G~-~v~~ve~~~~g~yev~~~~~dG~-~~ev~-vD~~tG~V~~ 81 (83)
T PF13670_consen 40 AQGY-QVREVEFDDDGCYEVEARDKDGK-KVEVY-VDPATGEVVK 81 (83)
T ss_pred hcCC-ceEEEEEcCCCEEEEEEEECCCC-EEEEE-EcCCCCeEee
Confidence 4677 99999998899988888888776 35554 5778887654
No 314
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=22.68 E-value=1.9e+02 Score=30.26 Aligned_cols=47 Identities=30% Similarity=0.461 Sum_probs=33.3
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCCeEEEEEEEECCCCCeeccccCCc-cceeEE
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEW 243 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~E~~~l~v~dl~tg~~~~~~i~~~-~~~~~W 243 (534)
-....+.+||+|++.|.+ |.-| .|.++|+.++..+. ..+|. ...+.|
T Consensus 308 R~~~~i~~sP~~~laA~t-DslG----RV~LiD~~~~~vvr-mWKGYRdAqc~w 355 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT-DSLG----RVLLIDVARGIVVR-MWKGYRDAQCGW 355 (415)
T ss_pred ceEEEEEECCCCCEEEEE-cCCC----cEEEEECCCChhhh-hhccCccceEEE
Confidence 346678999999988885 6555 69999999988765 34443 334555
No 315
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=22.36 E-value=93 Score=26.90 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=37.6
Q ss_pred cCCcccccCCCCCHHH-----HHHHHHHHHHHHHHhcCChHhHHHHHHHHhhcccC
Q 009441 71 DNYYWLRDDSRSDPEV-----LAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQ 121 (534)
Q Consensus 71 DpY~WLed~~~~~~~v-----~~~l~~en~~t~~~l~~~~~~~~~l~~e~~~~~~~ 121 (534)
|=..+++|.. ||.+ +.-..+-|+|+.--+..++.+|+.|.+|+.+-+++
T Consensus 75 eVl~yIddGr--NPd~ytke~le~~~~kNq~vkGK~~~~K~fr~~l~eEl~q~fPe 128 (147)
T KOG3046|consen 75 EVLEYIDDGR--NPDLYTKEFLEKCLAKNQYVKGKIDAFKKFRKHLAEELSQEFPE 128 (147)
T ss_pred HHHHHHhcCC--CccHHHHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHChH
Confidence 3456777877 7743 44455779999999999999999999999876664
No 316
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=21.88 E-value=8.5e+02 Score=24.76 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=28.7
Q ss_pred ceeEEccCCeEEEEEECCCCCCceEEEeec--CCCCC--CceEeeeec-C----Cce-EEEEEEcCCCcEEEEEec
Q 009441 239 ASVEWAGNEALVYITMDEILRPDKAWLHKL--EADQS--NDICLYHEK-D----DIY-SLGLQASESKKFLFIASE 304 (534)
Q Consensus 239 ~~~~Ws~Dg~l~Y~~~d~~~r~~~v~~~~l--gt~~~--~d~lv~~e~-d----~~~-~v~~~~S~Dg~~l~i~~~ 304 (534)
.++++.++| +|.+. ..+|+++.- |.+.. +.++++..- . +.. .-.+.+.+||+ |.+...
T Consensus 75 ~Gi~~~~~G-lyV~~------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 75 TGLAVAVGG-VYVAT------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred cceeEecCC-EEEeC------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 458888887 55542 225776632 21111 223444321 1 111 22577889996 555443
No 317
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=21.40 E-value=7.9e+02 Score=24.17 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.8
Q ss_pred EEEEEECCCCCEEEEEEc
Q 009441 193 VGCFQVSPDNKLVAYAED 210 (534)
Q Consensus 193 l~~~~~SPDG~~LA~~~d 210 (534)
+.+..+|||+++++..-|
T Consensus 161 ~ns~~~snd~~~~~~Vgd 178 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGD 178 (344)
T ss_pred eeeeEEcCCCceEEEecC
Confidence 677899999999987643
No 318
>COG5497 Predicted secreted protein [Function unknown]
Probab=21.27 E-value=1.9e+02 Score=27.22 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=27.5
Q ss_pred EEEEEEECCCCCEEEEEEcC--C--CCeEEEEEEEECCCCCee
Q 009441 192 SVGCFQVSPDNKLVAYAEDT--K--GDEIYTVYVIDIETGTPV 230 (534)
Q Consensus 192 ~l~~~~~SPDG~~LA~~~d~--~--G~E~~~l~v~dl~tg~~~ 230 (534)
.+...-+||||++.||...- + |.-...++++|..+...+
T Consensus 23 ~~~~lGFS~dG~~Faf~~yG~~dG~g~~ys~~y~vd~~~D~fv 65 (228)
T COG5497 23 AFKNLGFSPDGRYFAFAEYGEQDGLGFPYSKIYVVDTSEDWFV 65 (228)
T ss_pred eeEEeeeccCCCEEeehhcccccCCCCceEEEEEEeccccccc
Confidence 34456799999999988663 3 444667888887765543
No 319
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=20.80 E-value=6.7e+02 Score=23.14 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=55.0
Q ss_pred EEEECCCCCEEEEEEcCCCC--e--EEEEEEEECCCCCeeccccCC-----ccceeEEccCCeEEEEEECC---CCCCce
Q 009441 195 CFQVSPDNKLVAYAEDTKGD--E--IYTVYVIDIETGTPVGKPLVG-----VTASVEWAGNEALVYITMDE---ILRPDK 262 (534)
Q Consensus 195 ~~~~SPDG~~LA~~~d~~G~--E--~~~l~v~dl~tg~~~~~~i~~-----~~~~~~Ws~Dg~l~Y~~~d~---~~r~~~ 262 (534)
.|.=|-+|++=|+..-.+-+ | -..|||+|+.+++.....|.. ..-.+.|..|..|+++--.. -.....
T Consensus 62 ~wk~s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGn 141 (200)
T PF15525_consen 62 KWKNSENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGN 141 (200)
T ss_pred ccccccCCceeEEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCe
Confidence 45678899999998775321 2 257999999999876432321 11248899888666664211 122457
Q ss_pred EEEeecCCCCCCceEeeee
Q 009441 263 AWLHKLEADQSNDICLYHE 281 (534)
Q Consensus 263 v~~~~lgt~~~~d~lv~~e 281 (534)
||.+++-+++ -..++.-
T Consensus 142 Ly~~nl~tg~--~~~ly~~ 158 (200)
T PF15525_consen 142 LYKYNLNTGN--LTELYEW 158 (200)
T ss_pred EEEEEccCCc--eeEeeec
Confidence 9999998874 3456653
No 320
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=20.53 E-value=1.6e+02 Score=28.83 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCCCCcEEEEEEEEcC----CCceecEEEEEeCCCCCCCCCCcEEEEEcCCC
Q 009441 479 FDTNNYFTERKWASAS----DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY 526 (534)
Q Consensus 479 ~d~~~~~~e~v~~~S~----DG~~VP~~lv~~k~~~~~~~~~P~lL~gYGgy 526 (534)
|+.-+|.++.+.+.+. ---..|+.|+.|..- |.+|+|++.||-+
T Consensus 9 F~~G~~~~~~~~Vd~s~~~~~spPkpLlI~tP~~~----G~yPVilF~HG~~ 56 (307)
T PF07224_consen 9 FETGKYKTKLFNVDTSSNSSPSPPKPLLIVTPSEA----GTYPVILFLHGFN 56 (307)
T ss_pred eecCCceeEEEeecCCCCCCCCCCCCeEEecCCcC----CCccEEEEeechh
Confidence 5556677777766321 225678898888743 8999999999954
No 321
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=20.24 E-value=3.5e+02 Score=27.62 Aligned_cols=61 Identities=8% Similarity=-0.035 Sum_probs=34.0
Q ss_pred EEEEEEEECCCCCEEEEEEcCCCC---------------eEEEEEEEECCCCCeec--cccCCccceeEEccCCeEEEEE
Q 009441 191 YSVGCFQVSPDNKLVAYAEDTKGD---------------EIYTVYVIDIETGTPVG--KPLVGVTASVEWAGNEALVYIT 253 (534)
Q Consensus 191 ~~l~~~~~SPDG~~LA~~~d~~G~---------------E~~~l~v~dl~tg~~~~--~~i~~~~~~~~Ws~Dg~l~Y~~ 253 (534)
.....+.+.|||++.+ +.-..++ ....++.+|.++++... ..+.+. .+++|+++|.+|++-
T Consensus 124 ~~~~~l~~gpDG~LYv-~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp-~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYF-NHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNP-YGHSVDSWGDVFFCD 201 (367)
T ss_pred ccccCceECCCCCEEE-ecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCC-ccceECCCCCEEEEc
Confidence 3467789999997433 2221110 01357777777665321 112222 458999988776654
Done!