BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009443
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 224 SCSYEHQTKWGEEVGFSYQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVL 283
S + + E GF+ ++++ED T +H +GW S Y+D R G +
Sbjct: 320 SAAVLRRRALDEAGGFAGETITEDAETALEIHSRGWKSLYID--RAMIAGLQPETFASFI 377
Query: 284 IQGTRWASGLIDVSISRFCPLLYGPSRMSLLLSMCY-GEMS--LFPLLYCLPLWCFATLP 340
Q RWA+G++ + + + G + + +CY MS FPL+ + F P
Sbjct: 378 QQRGRWATGMMQMLLLKNPLFRRG---LGIAQRLCYLNSMSFWFFPLVRMM----FLVAP 430
Query: 341 QLCLLNGIPLY 351
+ L GI ++
Sbjct: 431 LIYLFFGIEIF 441
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 42 DLVEMPLLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSAR 101
D+V V+V RE + +H+ + GA V++ G Y++G++ D Y +D
Sbjct: 94 DIVIEGTGVFVDREGAGKHI---EAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIIS 150
Query: 102 QAMCFHLDPKTSSSLA-FVQ-FPQKF 125
A C T++ LA FV+ QKF
Sbjct: 151 NASC------TTNCLAPFVKVLDQKF 170
>pdb|2WE0|A Chain A, Ebv Dutpase Mutant Cys4ser
Length = 286
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 268 RPQFLGTSTTNLNDVLIQGTRWASGLIDVSIS-------------RFCPLLY 306
RP G S + +L++ RW G +DVS++ RFC L+Y
Sbjct: 173 RPTIFGRSGLAMQGILVKPCRWRRGGVDVSLTNFSDQTVFLNKYRRFCQLVY 224
>pdb|2BSY|A Chain A, Epstein Barr Virus Dutpase
pdb|2BT1|A Chain A, Epstein Barr Virus Dutpase In Complex With A,B-Imino Dutp
Length = 278
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 268 RPQFLGTSTTNLNDVLIQGTRWASGLIDVSIS-------------RFCPLLY 306
RP G S + +L++ RW G +DVS++ RFC L+Y
Sbjct: 165 RPTIFGRSGLAMQGILVKPCRWRRGGVDVSLTNFSDQTVFLNKYRRFCQLVY 216
>pdb|2WE2|A Chain A, Ebv Dutpase Double Mutant Gly78asp-Asp131ser With Dump
Length = 286
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 268 RPQFLGTSTTNLNDVLIQGTRWASGLIDVSIS-------------RFCPLLY 306
RP G S + +L++ RW G +DVS++ RFC L+Y
Sbjct: 173 RPTIFGRSGLAMQGILVKPCRWRRGGVDVSLTNFSDQTVFLNKYRRFCQLVY 224
>pdb|2WE1|A Chain A, Ebv Dutpase Mutant Asp131asn With Bound Dump
Length = 286
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 268 RPQFLGTSTTNLNDVLIQGTRWASGLIDVSIS-------------RFCPLLY 306
RP G S + +L++ RW G +DVS++ RFC L+Y
Sbjct: 173 RPTIFGRSGLAMQGILVKPCRWRRGGVDVSLTNFSDQTVFLNKYRRFCQLVY 224
>pdb|2WE3|A Chain A, Ebv Dutpase Inactive Mutant Deleted Of Motif V
Length = 264
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 268 RPQFLGTSTTNLNDVLIQGTRWASGLIDVSIS-------------RFCPLLY 306
RP G S + +L++ RW G +DVS++ RFC L+Y
Sbjct: 173 RPTIFGRSGLAMQGILVKPCRWRRGGVDVSLTNFSDQTVFLNKYRRFCQLVY 224
>pdb|2QT3|A Chain A, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
Adp Complexed With Zn
pdb|2QT3|B Chain B, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
Adp Complexed With Zn
Length = 403
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 334 WCFATLPQLCLLNGIPLYPEVSSPFFMVFS 363
WCFA P L IPLY + F FS
Sbjct: 251 WCFADAPSEWLDEAIPLYKDSGMKFVTCFS 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,451,237
Number of Sequences: 62578
Number of extensions: 641387
Number of successful extensions: 1272
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 9
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)