Query 009443
Match_columns 534
No_of_seqs 270 out of 1722
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 05:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 99.2 2.6E-11 1.9E-15 120.8 9.7 84 18-111 47-136 (328)
2 d1qg8a_ c.68.1.1 (A:) Spore co 98.5 7.1E-08 5.2E-12 91.4 7.0 137 17-169 24-168 (255)
3 d1omza_ c.68.1.15 (A:) Alpha-1 98.4 1.7E-08 1.2E-12 92.6 0.0 83 16-109 25-108 (265)
4 d2bo4a1 c.68.1.18 (A:2-382) Ma 90.8 0.2 1.5E-05 49.7 7.4 47 62-108 72-118 (381)
5 d1w55a1 c.68.1.13 (A:3-207) Is 71.7 1.9 0.00014 38.3 5.0 40 65-108 74-113 (205)
6 d2idba2 d.333.1.1 (A:326-491) 16.8 1.4E+02 0.01 24.6 6.9 79 18-111 20-99 (166)
7 d1vgwa_ c.68.1.13 (A:) 4-dipho 15.2 2.5E+02 0.018 23.2 8.5 42 67-109 87-128 (226)
8 d1kf6c_ f.21.2.2 (C:) Fumarate 12.9 2.7E+02 0.019 22.2 7.1 47 455-501 67-128 (130)
9 d1e5ka_ c.68.1.8 (A:) Molybden 10.4 2.3E+02 0.016 22.4 6.4 41 64-108 75-115 (188)
10 d1i52a_ c.68.1.13 (A:) 4-dipho 10.2 4E+02 0.029 21.4 9.8 58 42-109 65-122 (225)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.17 E-value=2.6e-11 Score=120.81 Aligned_cols=84 Identities=13% Similarity=-0.085 Sum_probs=60.2
Q ss_pred cccCcc---eEEEEECCCCChhh--hHHh-hhhcCCcEEEEEccCCCCCCCCChHHHHHHHHHHcCCCCCCCEEEEeCCC
Q 009443 18 SRNHST---IIEIIQDTSGENET--IRQA-DLVEMPLLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCD 91 (534)
Q Consensus 18 ~~dh~~---~i~vi~~~~~~~~~--~~~~-~~~~~p~l~Yv~Rek~p~~~~~~KAGaLN~~l~~s~~~s~g~~Il~lDaD 91 (534)
.|.+|. .|-|+.|+|.|+.. ..+. .....+.++++..+++ .++++|.|.|++. ++||||+++|+|
T Consensus 47 ~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n-----~G~~~a~N~Gi~~----a~gd~i~flD~D 117 (328)
T d1xhba2 47 NRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQR-----SGLIRARLKGAAV----SRGQVITFLDAH 117 (328)
T ss_dssp HSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSC-----CCHHHHHHHHHHH----CCSSEEEEEESS
T ss_pred hcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEeccc-----ccchHHHHHHHHh----hhcceeeecCcc
Confidence 455554 34345455655421 2222 2334557888877665 5899999999999 999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCC
Q 009443 92 MYCNDPTSARQAMCFHLDPK 111 (534)
Q Consensus 92 ~~~~~p~~l~~~~~~f~dp~ 111 (534)
.+ ++|++|++++..|.+.+
T Consensus 118 ~~-~~p~~l~~l~~~~~~~~ 136 (328)
T d1xhba2 118 CE-CTAGWLEPLLARIKHDR 136 (328)
T ss_dssp EE-ECTTCHHHHHHHHHHCT
T ss_pred cc-cChhHHHHHHHHHhcCC
Confidence 97 56999999999887544
No 2
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=98.48 E-value=7.1e-08 Score=91.42 Aligned_cols=137 Identities=16% Similarity=0.090 Sum_probs=81.2
Q ss_pred CcccCcce-EEEEECCCCChhh-hHHhhhhcCCcEEEEEccCCC---CCCCCChHHHHHHHHHHcCCCCCCCEEEEeCCC
Q 009443 17 NSRNHSTI-IEIIQDTSGENET-IRQADLVEMPLLVYVSREKSP---EHLHHFKGGALNVLLRVSGVISNSPYILGLDCD 91 (534)
Q Consensus 17 ~~~dh~~~-i~vi~~~~~~~~~-~~~~~~~~~p~l~Yv~Rek~p---~~~~~~KAGaLN~~l~~s~~~s~g~~Il~lDaD 91 (534)
..|++++. |-|+.|++.|+.. +.+... .-+++.++.-+..- .....++++|+|.|++. ++||||+.+|+|
T Consensus 24 ~~Qt~~~~eiivvdd~S~d~t~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~----a~g~~i~~lD~D 98 (255)
T d1qg8a_ 24 LSQTFSDFELFIMDDNSNEETLNVIRPFL-NDNRVRFYQSDISGVKERTEKTRYAALINQAIEM----AEGEYITYATDD 98 (255)
T ss_dssp HTCSCCCEEEEEEECSCCHHHHHHHGGGG-GSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETT
T ss_pred HhCCCCCeEEEEEECCCCccHHHHHHHhh-hhcccccccccccccccccccchhcccccccccc----cccccccccccc
Confidence 45677763 2233354554421 223333 44778887654210 01247899999999999 899999999999
Q ss_pred CCCCchHHHHHHHHHhc-CCCCCCceEEEcCCccccCCCccchHHHHHHHhhhhhHh-hhhhcCCc-ccccceeeeeccc
Q 009443 92 MYCNDPTSARQAMCFHL-DPKTSSSLAFVQFPQKFHNFNEHDIYDGSLRSGYRLQWP-GMDGLKGP-FLTGTGHYIRRES 168 (534)
Q Consensus 92 ~~~~~p~~l~~~~~~f~-dp~~~~~v~~VQ~pq~f~n~~~~d~~~~~~~~f~~~~~~-g~d~~~~~-~~~Gtg~~~RR~a 168 (534)
.. .+|++|++++.+|. +|+ +++|.+....++.+.+.. ........ ....+... .+.+++.++||++
T Consensus 99 d~-~~p~~l~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (255)
T d1qg8a_ 99 NI-YMPDRLLKMVRELDTHPE----KAVIYSASKTYHLNENRD------IVKETVRPAAQVTWNAPCAIDHCSVMHRYSV 167 (255)
T ss_dssp EE-ECTTHHHHHHHHHHHCTT----CCEEEEEEEEEEEC---C------EEEEEEECCCSCBSCCTTTSCGGGEEEETHH
T ss_pred cc-cccchHHHHHHHHHhCCC----CCeEeecceeeeeCCCCc------EeeeecccchhhhhhhcccccchhHHHHHHH
Confidence 96 56999999999885 454 677766655544322110 01111111 11122222 3467778899998
Q ss_pred c
Q 009443 169 L 169 (534)
Q Consensus 169 L 169 (534)
+
T Consensus 168 ~ 168 (255)
T d1qg8a_ 168 L 168 (255)
T ss_dssp H
T ss_pred H
Confidence 7
No 3
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.39 E-value=1.7e-08 Score=92.61 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=59.0
Q ss_pred CCcccCcceEEEEECCCCChhh-hHHhhhhcCCcEEEEEccCCCCCCCCChHHHHHHHHHHcCCCCCCCEEEEeCCCCCC
Q 009443 16 GNSRNHSTIIEIIQDTSGENET-IRQADLVEMPLLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYC 94 (534)
Q Consensus 16 ~~~~dh~~~i~vi~~~~~~~~~-~~~~~~~~~p~l~Yv~Rek~p~~~~~~KAGaLN~~l~~s~~~s~g~~Il~lDaD~~~ 94 (534)
..+|+|+..+-|+.|++.++.. .+.......+...+... + +.++++|+|.|++. ++||||+.+|+|..
T Consensus 25 l~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~-~-----~~g~~~a~n~~~~~----a~ge~i~~lD~D~~- 93 (265)
T d1omza_ 25 YQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKP-Q-----TANKMRNRLQVFPE----VETNAVLMVDDDTL- 93 (265)
T ss_dssp HTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEE-C-----SSCCGGGGGSCCTT----CCSSEEEEECTTEE-
T ss_pred HHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEec-C-----CCCchhhhhhhHHh----CCcCEEEEeCcccC-
Confidence 4678999987566666555432 22222333444444433 2 36899999999999 89999999999997
Q ss_pred CchHHHHHHHHHhcC
Q 009443 95 NDPTSARQAMCFHLD 109 (534)
Q Consensus 95 ~~p~~l~~~~~~f~d 109 (534)
++|++|++++..+.+
T Consensus 94 ~~~~~l~~l~~~~~~ 108 (265)
T d1omza_ 94 ISAQDLVFAFSIWQQ 108 (265)
T ss_dssp ECHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHh
Confidence 569999999998864
No 4
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=90.80 E-value=0.2 Score=49.74 Aligned_cols=47 Identities=21% Similarity=0.017 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCchHHHHHHHHHhc
Q 009443 62 HHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL 108 (534)
Q Consensus 62 ~~~KAGaLN~~l~~s~~~s~g~~Il~lDaD~~~~~p~~l~~~~~~f~ 108 (534)
+.+|..++..|+......++||+|+.+|||..-++|+.+.+++....
T Consensus 72 ~~GKG~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~ 118 (381)
T d2bo4a1 72 RPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD 118 (381)
T ss_dssp SSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHh
Confidence 45787766666543211289999999999975567999999887764
No 5
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=71.66 E-value=1.9 Score=38.29 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCchHHHHHHHHHhc
Q 009443 65 KGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL 108 (534)
Q Consensus 65 KAGaLN~~l~~s~~~s~g~~Il~lDaD~~~~~p~~l~~~~~~f~ 108 (534)
....+-++|+. .+.++|++.|||.=.-+++.+.+++....
T Consensus 74 r~~Sv~~gl~~----~~~~~VlIhd~~rP~i~~~~i~~li~~~~ 113 (205)
T d1w55a1 74 RAESLKKALEL----IDSEFVMVSDVARVLVSKNLFDRLIENLD 113 (205)
T ss_dssp HHHHHHHHHTT----CCSSEEEEEETTCTTCCHHHHHHHHTTGG
T ss_pred hhhhhhhhhhh----hhhcceeeeccCcccCcHHHHHHHHhhhh
Confidence 45667778887 68899999999985557888888886654
No 6
>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
Probab=16.83 E-value=1.4e+02 Score=24.61 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=50.3
Q ss_pred cccCcceEEEEECCCCChhhhHHhhhhcCCcEEEEEccCC-CCCCCCChHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCc
Q 009443 18 SRNHSTIIEIIQDTSGENETIRQADLVEMPLLVYVSREKS-PEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCND 96 (534)
Q Consensus 18 ~~dh~~~i~vi~~~~~~~~~~~~~~~~~~p~l~Yv~Rek~-p~~~~~~KAGaLN~~l~~s~~~s~g~~Il~lDaD~~~~~ 96 (534)
+...|+++.|-.-..+ ...++.+++=+|+ |+ ++| .++++++...+.++...+|+++|.|--+.|
T Consensus 20 ~~~~P~V~dV~~p~~g-----------~~~~~~vvsI~k~~pg---~a~-~~~~a~~~~~~~~~~~K~vivVD~Didi~d 84 (166)
T d2idba2 20 QKQFPEIVDFYLPPEG-----------CSYRLAVVTIKKQYAG---HAK-RVMMGVWSFLRQFMYTKFVIVCDDDVNARD 84 (166)
T ss_dssp HHHCTTEEEEECCGGG-----------TTTSEEEEEECCCSTT---HHH-HHHHHHHHSSGGGSSCCEEEEEETTSCTTC
T ss_pred HHhCCCeEEEEechhc-----------CeeeEEEEEEEeCCcc---HHH-HHHHHHHHhccccceeEEEEEeCCCCCccc
Confidence 4457787777642111 2236667776665 43 222 244555555555577899999999987778
Q ss_pred hHHHHHHHHHhcCCC
Q 009443 97 PTSARQAMCFHLDPK 111 (534)
Q Consensus 97 p~~l~~~~~~f~dp~ 111 (534)
++-+..+++.=.||+
T Consensus 85 ~~~v~wa~~tR~dp~ 99 (166)
T d2idba2 85 WNDVIWAITTRMDPA 99 (166)
T ss_dssp HHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHHccCcc
Confidence 877777777666764
No 7
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}
Probab=15.19 E-value=2.5e+02 Score=23.24 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCCCCCEEEEeCCCCCCCchHHHHHHHHHhcC
Q 009443 67 GALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 109 (534)
Q Consensus 67 GaLN~~l~~s~~~s~g~~Il~lDaD~~~~~p~~l~~~~~~f~d 109 (534)
++++.+... ....+.++|++.|+|.-.-.++.+.+++..+.+
T Consensus 87 ~~l~~~~~~-~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~ 128 (226)
T d1vgwa_ 87 NGVAKLLET-GLAAETDNILVHDAARCCLPSEALARLIEQAGN 128 (226)
T ss_dssp HHHHHHHHH-SSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-cccccccceeecccccccCcHHHHHHHHhhhcc
Confidence 445544433 223678999999999733347888888887764
No 8
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=12.95 E-value=2.7e+02 Score=22.16 Aligned_cols=47 Identities=9% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhh----c---------CC-c-hHHHHHHHHHHHHHHHHHHHHHHH
Q 009443 455 SLMILNVAALVCGVIRMIA----V---------GN-W-DKLFAQVLLSLYILIINFAIVEGM 501 (534)
Q Consensus 455 ~l~~l~l~alv~g~~~~~~----~---------g~-~-~~~~~~l~~~~w~~~~l~p~~~al 501 (534)
.++++|+++++..+++..+ . |. . ........|+.+.++....++.++
T Consensus 67 ~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~i~v~~~~~~~~~iv~~~wa~~~~vsvv~L~val 128 (130)
T d1kf6c_ 67 VIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVAL 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcCccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999998887764 0 11 1 234444556666666655555544
No 9
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}
Probab=10.44 E-value=2.3e+02 Score=22.37 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCchHHHHHHHHHhc
Q 009443 64 FKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL 108 (534)
Q Consensus 64 ~KAGaLN~~l~~s~~~s~g~~Il~lDaD~~~~~p~~l~~~~~~f~ 108 (534)
.-.+.+-.++.. .+.+.++++-||+-.-+++.+++++....
T Consensus 75 ~~~~g~~~~~~~----~~~~~vlv~~~D~P~i~~~~i~~L~~~~~ 115 (188)
T d1e5ka_ 75 GPLAGMLSVMQQ----EAGEWFLFCPCDTPYIPPDLAARLNHQRK 115 (188)
T ss_dssp SHHHHHHHHHHH----CCSSEEEEEETTCTTCCTTHHHHHHHTCT
T ss_pred chhHHHHHHHHh----cccceEEEeccCCCCCCHHHHHHHHHhcc
Confidence 345566667777 78899999999996557888888776543
No 10
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}
Probab=10.24 E-value=4e+02 Score=21.43 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=36.7
Q ss_pred hhhcCCcEEEEEccCCCCCCCCChHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCchHHHHHHHHHhcC
Q 009443 42 DLVEMPLLVYVSREKSPEHLHHFKGGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 109 (534)
Q Consensus 42 ~~~~~p~l~Yv~Rek~p~~~~~~KAGaLN~~l~~s~~~s~g~~Il~lDaD~~~~~p~~l~~~~~~f~d 109 (534)
.....+.+.....+ ...+.++-+++.. +.+.++|++.|+|.-.-.++.+.++...+.+
T Consensus 65 ~~~~~~~v~~~~~~-------~~~~~sv~~~~~~---~~~~~~vl~~~~~~p~i~~~~~~~~~~~~~~ 122 (225)
T d1i52a_ 65 PLANHPQITVVDGG-------DERADSVLAGLKA---AGDAQWVLVHDAARPCLHQDDLARLLALSET 122 (225)
T ss_dssp GGGGCTTEEEEECC-------SSHHHHHHHHHHT---STTCSEEEECCTTCTTCCHHHHHHHHGGGGT
T ss_pred hhccccccccccCC-------cchhHHHHhhhcc---cCccceeeeeccCCCCCCHHHHHHHHhhhhh
Confidence 34455665554322 2344555555554 2678999999999754557888887777754
Done!