Query 009444
Match_columns 534
No_of_seqs 318 out of 1544
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 4E-122 8E-127 984.6 44.1 459 49-517 2-460 (484)
2 PRK06830 diphosphate--fructose 100.0 4E-111 8E-116 896.5 40.5 417 86-508 17-442 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 5E-110 1E-114 891.8 41.1 408 103-516 44-454 (459)
4 PLN02884 6-phosphofructokinase 100.0 4E-103 8E-108 829.6 39.9 374 127-506 36-411 (411)
5 PRK06555 pyrophosphate--fructo 100.0 1.1E-89 2.4E-94 722.5 38.1 350 145-504 4-400 (403)
6 PRK14071 6-phosphofructokinase 100.0 7E-85 1.5E-89 682.5 35.5 332 144-496 4-351 (360)
7 TIGR02478 6PF1K_euk 6-phosphof 100.0 5E-85 1.1E-89 733.7 33.1 401 70-499 300-736 (745)
8 PRK14072 6-phosphofructokinase 100.0 2.3E-84 5E-89 689.5 34.8 340 144-498 3-386 (416)
9 TIGR02483 PFK_mixed phosphofru 100.0 4.6E-84 1E-88 667.9 33.8 316 146-480 1-324 (324)
10 cd00363 PFK Phosphofructokinas 100.0 9.2E-84 2E-88 669.7 36.3 325 145-496 1-336 (338)
11 cd00764 Eukaryotic_PFK Phospho 100.0 2.3E-84 5E-89 726.0 32.9 397 69-499 302-736 (762)
12 cd00763 Bacterial_PFK Phosphof 100.0 1.1E-82 2.4E-87 655.8 33.5 307 145-497 1-313 (317)
13 TIGR02482 PFKA_ATP 6-phosphofr 100.0 1.4E-82 2.9E-87 650.7 33.3 294 146-479 1-300 (301)
14 PRK03202 6-phosphofructokinase 100.0 2.4E-81 5.2E-86 646.6 35.2 308 145-498 2-316 (320)
15 TIGR02477 PFKA_PPi diphosphate 100.0 1.3E-79 2.7E-84 668.5 36.8 394 80-483 6-475 (539)
16 COG0205 PfkA 6-phosphofructoki 100.0 6.3E-79 1.4E-83 631.0 31.7 311 144-486 2-319 (347)
17 PRK07085 diphosphate--fructose 100.0 1.7E-78 3.7E-83 660.9 34.3 393 80-483 11-484 (555)
18 cd00764 Eukaryotic_PFK Phospho 100.0 3.4E-78 7.4E-83 676.3 35.9 346 143-516 2-377 (762)
19 TIGR02478 6PF1K_euk 6-phosphof 100.0 4.6E-78 1E-82 677.5 36.1 345 145-517 1-375 (745)
20 cd00765 Pyrophosphate_PFK Phos 100.0 2.2E-77 4.8E-82 650.3 34.3 397 80-485 11-489 (550)
21 PLN03028 pyrophosphate--fructo 100.0 1.2E-76 2.7E-81 650.0 33.1 395 80-482 12-483 (610)
22 PLN02251 pyrophosphate-depende 100.0 1.2E-75 2.6E-80 638.1 35.5 392 80-483 37-502 (568)
23 PTZ00468 phosphofructokinase f 100.0 3.8E-73 8.2E-78 650.3 34.3 392 80-482 39-502 (1328)
24 PF00365 PFK: Phosphofructokin 100.0 6.6E-74 1.4E-78 582.7 24.1 275 145-457 1-282 (282)
25 PTZ00287 6-phosphofructokinase 100.0 8.6E-72 1.9E-76 642.9 35.7 338 143-481 176-572 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 9.7E-65 2.1E-69 584.6 31.1 335 142-481 834-1271(1419)
27 PTZ00468 phosphofructokinase f 100.0 5.9E-56 1.3E-60 509.0 30.7 332 143-481 674-1133(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 1.9E-54 4.2E-59 472.3 6.3 446 70-515 44-544 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 6.9E-46 1.5E-50 405.3 17.0 374 48-457 263-662 (666)
30 PRK04761 ppnK inorganic polyph 93.2 0.27 5.8E-06 50.1 7.3 62 224-300 10-80 (246)
31 PRK04885 ppnK inorganic polyph 91.8 0.46 9.9E-06 48.8 7.0 56 233-301 35-92 (265)
32 PRK14077 pnk inorganic polypho 91.0 0.63 1.4E-05 48.3 7.2 54 233-301 64-119 (287)
33 PRK03501 ppnK inorganic polyph 90.5 0.72 1.6E-05 47.4 7.0 55 233-301 39-96 (264)
34 PRK00561 ppnK inorganic polyph 89.9 0.48 1E-05 48.6 5.1 62 223-299 18-87 (259)
35 PRK01911 ppnK inorganic polyph 88.5 0.78 1.7E-05 47.8 5.6 56 233-303 64-121 (292)
36 PRK03372 ppnK inorganic polyph 88.4 0.6 1.3E-05 49.0 4.7 55 233-302 72-128 (306)
37 PRK14075 pnk inorganic polypho 88.0 1.3 2.9E-05 45.1 6.9 52 232-301 40-93 (256)
38 PF01513 NAD_kinase: ATP-NAD k 87.7 0.34 7.4E-06 49.9 2.3 63 224-301 67-131 (285)
39 PRK02649 ppnK inorganic polyph 87.5 0.89 1.9E-05 47.7 5.3 53 233-300 68-122 (305)
40 PRK04539 ppnK inorganic polyph 87.4 0.89 1.9E-05 47.5 5.2 54 233-301 68-123 (296)
41 PRK03378 ppnK inorganic polyph 87.2 1.1 2.5E-05 46.5 5.9 53 233-300 63-117 (292)
42 PLN02929 NADH kinase 86.9 1.1 2.4E-05 46.9 5.6 63 232-300 63-135 (301)
43 TIGR01917 gly_red_sel_B glycin 86.1 2.6 5.7E-05 46.1 7.9 119 143-263 222-367 (431)
44 PLN02935 Bifunctional NADH kin 85.7 1.2 2.5E-05 49.8 5.2 53 233-300 262-316 (508)
45 TIGR01918 various_sel_PB selen 85.3 2.8 6.2E-05 45.8 7.8 122 143-268 222-370 (431)
46 COG3199 Predicted inorganic po 84.3 1.6 3.4E-05 46.5 5.1 49 220-274 87-135 (355)
47 PRK01231 ppnK inorganic polyph 84.1 1.6 3.5E-05 45.5 5.2 54 233-301 62-117 (295)
48 PRK10014 DNA-binding transcrip 83.9 54 0.0012 33.5 19.7 87 144-268 64-150 (342)
49 PRK11914 diacylglycerol kinase 83.3 3.1 6.8E-05 42.9 6.9 70 219-296 50-120 (306)
50 PRK13054 lipid kinase; Reviewe 83.2 10 0.00023 39.0 10.7 91 217-318 40-131 (300)
51 PF00532 Peripla_BP_1: Peripla 82.9 13 0.00029 37.8 11.2 137 212-368 35-185 (279)
52 cd06321 PBP1_ABC_sugar_binding 82.0 46 0.001 32.5 14.4 127 146-314 1-128 (271)
53 PRK03708 ppnK inorganic polyph 81.8 2.2 4.7E-05 44.1 5.1 52 232-299 56-109 (277)
54 PRK13337 putative lipid kinase 81.4 7.9 0.00017 40.0 9.0 90 219-320 43-132 (304)
55 PRK13055 putative lipid kinase 80.9 5.1 0.00011 42.1 7.6 66 215-287 41-107 (334)
56 PRK02645 ppnK inorganic polyph 80.6 1.9 4.1E-05 45.1 4.2 55 233-301 57-114 (305)
57 PRK02155 ppnK NAD(+)/NADH kina 80.2 3 6.6E-05 43.4 5.5 53 233-300 63-117 (291)
58 PRK02231 ppnK inorganic polyph 79.3 1.8 3.9E-05 44.7 3.4 52 233-299 42-95 (272)
59 COG1609 PurR Transcriptional r 79.2 32 0.00069 36.1 12.8 163 145-363 59-234 (333)
60 PLN02958 diacylglycerol kinase 79.1 15 0.00033 40.9 10.8 99 177-278 112-215 (481)
61 PRK14076 pnk inorganic polypho 77.6 3.5 7.6E-05 46.8 5.4 53 233-300 348-402 (569)
62 PLN02727 NAD kinase 77.6 3.2 7E-05 49.4 5.2 55 233-302 743-799 (986)
63 cd01537 PBP1_Repressors_Sugar_ 75.8 74 0.0016 30.2 21.6 127 146-316 1-127 (264)
64 COG0061 nadF NAD kinase [Coenz 75.2 5.6 0.00012 41.1 5.7 44 232-290 54-97 (281)
65 PRK01185 ppnK inorganic polyph 74.9 5.4 0.00012 41.2 5.5 52 233-302 52-105 (271)
66 cd06317 PBP1_ABC_sugar_binding 73.5 92 0.002 30.2 13.7 23 222-244 45-67 (275)
67 TIGR03702 lip_kinase_YegS lipi 72.9 15 0.00033 37.7 8.2 61 215-277 34-95 (293)
68 cd06304 PBP1_BmpA_like Peripla 72.8 99 0.0021 30.3 19.6 23 221-243 44-66 (260)
69 PRK06186 hypothetical protein; 72.4 6.8 0.00015 39.6 5.4 58 233-306 53-112 (229)
70 PRK00861 putative lipid kinase 72.3 18 0.00039 37.2 8.7 107 178-295 4-111 (300)
71 PRK13059 putative lipid kinase 70.9 14 0.00031 38.1 7.5 62 228-295 51-112 (295)
72 TIGR00288 conserved hypothetic 70.7 53 0.0011 31.6 10.7 51 218-271 87-140 (160)
73 PRK10703 DNA-binding transcrip 69.7 1.3E+02 0.0029 30.6 19.3 69 145-246 60-128 (341)
74 TIGR00147 lipid kinase, YegS/R 69.7 17 0.00037 37.0 7.8 50 223-277 47-98 (293)
75 COG1570 XseA Exonuclease VII, 67.9 28 0.00062 38.4 9.3 97 140-268 131-231 (440)
76 PRK10423 transcriptional repre 67.9 1.4E+02 0.0031 30.1 18.2 69 144-246 56-125 (327)
77 cd08180 PDD 1,3-propanediol de 67.6 11 0.00024 39.5 6.0 52 220-271 65-118 (332)
78 cd06281 PBP1_LacI_like_5 Ligan 67.1 1.3E+02 0.0028 29.3 17.4 90 146-273 1-90 (269)
79 cd06533 Glyco_transf_WecG_TagA 66.5 38 0.00083 32.2 8.9 88 143-242 45-133 (171)
80 COG1597 LCB5 Sphingosine kinas 66.0 30 0.00064 36.2 8.7 108 178-297 4-116 (301)
81 cd08173 Gro1PDH Sn-glycerol-1- 65.3 11 0.00024 39.6 5.5 54 220-278 65-118 (339)
82 PF00465 Fe-ADH: Iron-containi 65.0 10 0.00022 40.3 5.1 57 220-276 65-135 (366)
83 cd07995 TPK Thiamine pyrophosp 65.0 70 0.0015 31.3 10.7 91 148-245 1-102 (208)
84 cd06278 PBP1_LacI_like_2 Ligan 64.9 1.4E+02 0.0029 28.8 13.7 42 221-268 42-83 (266)
85 PRK13057 putative lipid kinase 64.3 21 0.00045 36.6 7.1 86 219-319 37-122 (287)
86 cd08170 GlyDH Glycerol dehydro 63.1 13 0.00028 39.2 5.5 49 220-273 64-112 (351)
87 cd08195 DHQS Dehydroquinate sy 63.1 8 0.00017 40.8 3.9 50 220-272 69-121 (345)
88 cd08172 GlyDH-like1 Glycerol d 63.0 12 0.00025 39.6 5.1 51 220-275 63-113 (347)
89 cd08551 Fe-ADH iron-containing 62.6 15 0.00033 39.0 5.9 57 220-276 67-136 (370)
90 PRK12361 hypothetical protein; 62.6 19 0.00042 40.4 7.0 54 219-277 283-336 (547)
91 PRK00843 egsA NAD(P)-dependent 61.3 14 0.00031 39.1 5.5 51 220-275 74-124 (350)
92 PRK00002 aroB 3-dehydroquinate 60.8 13 0.00028 39.5 5.0 62 220-287 76-140 (358)
93 cd08177 MAR Maleylacetate redu 59.1 18 0.00038 38.2 5.6 49 220-273 64-112 (337)
94 cd07766 DHQ_Fe-ADH Dehydroquin 59.0 15 0.00033 38.2 5.1 53 220-275 65-117 (332)
95 cd08199 EEVS 2-epi-5-epi-valio 58.3 14 0.0003 39.4 4.8 64 220-289 71-138 (354)
96 TIGR01357 aroB 3-dehydroquinat 58.2 20 0.00043 37.8 5.8 50 220-272 65-117 (344)
97 cd01538 PBP1_ABC_xylose_bindin 57.2 2.1E+02 0.0045 28.5 21.6 86 146-268 1-86 (288)
98 cd08186 Fe-ADH8 Iron-containin 57.0 22 0.00047 38.2 6.0 36 220-255 71-106 (383)
99 cd08189 Fe-ADH5 Iron-containin 56.4 24 0.00052 37.7 6.1 56 220-275 70-139 (374)
100 PRK13951 bifunctional shikimat 56.0 12 0.00027 41.7 4.0 65 221-291 222-289 (488)
101 cd06299 PBP1_LacI_like_13 Liga 55.9 2E+02 0.0043 27.8 18.7 121 146-313 1-122 (265)
102 PF04263 TPK_catalytic: Thiami 55.5 78 0.0017 28.8 8.5 86 178-265 18-120 (123)
103 cd08194 Fe-ADH6 Iron-containin 55.3 23 0.0005 37.8 5.9 52 220-271 67-131 (375)
104 PRK10355 xylF D-xylose transpo 55.1 1.7E+02 0.0038 30.3 12.2 92 143-272 24-116 (330)
105 TIGR02810 agaZ_gatZ D-tagatose 54.7 2.4E+02 0.0053 31.2 13.3 139 146-313 12-168 (420)
106 PRK15458 tagatose 6-phosphate 54.4 1.9E+02 0.0041 32.0 12.5 139 146-313 16-172 (426)
107 PF00781 DAGK_cat: Diacylglyce 54.1 18 0.00038 32.4 4.1 65 221-291 41-108 (130)
108 cd08179 NADPH_BDH NADPH-depend 53.6 27 0.00058 37.3 6.0 34 220-253 68-101 (375)
109 cd03822 GT1_ecORF704_like This 53.6 1.4E+02 0.0031 29.6 11.0 85 146-243 1-86 (366)
110 TIGR02638 lactal_redase lactal 53.5 25 0.00055 37.6 5.8 52 220-271 73-139 (379)
111 cd08196 DHQS-like1 Dehydroquin 52.8 17 0.00038 38.7 4.4 66 220-291 60-128 (346)
112 PLN02834 3-dehydroquinate synt 52.7 15 0.00033 40.4 4.0 62 220-287 147-211 (433)
113 cd01575 PBP1_GntR Ligand-bindi 52.7 2.2E+02 0.0048 27.3 20.9 83 147-268 2-84 (268)
114 cd08181 PPD-like 1,3-propanedi 52.2 29 0.00063 36.9 5.9 53 220-272 70-134 (357)
115 cd06273 PBP1_GntR_like_1 This 52.1 2.3E+02 0.0049 27.4 14.9 41 222-268 44-84 (268)
116 cd06302 PBP1_LsrB_Quorum_Sensi 51.9 2.6E+02 0.0057 28.0 15.2 86 146-268 1-87 (298)
117 PF02601 Exonuc_VII_L: Exonucl 51.9 1E+02 0.0023 31.9 9.9 101 140-274 10-120 (319)
118 PF02645 DegV: Uncharacterised 51.8 1.1E+02 0.0025 31.2 10.0 162 146-330 1-183 (280)
119 PRK05670 anthranilate synthase 51.7 29 0.00063 33.3 5.4 49 229-290 39-87 (189)
120 COG0504 PyrG CTP synthase (UTP 51.7 27 0.00058 39.2 5.6 57 234-306 344-402 (533)
121 PRK09860 putative alcohol dehy 51.5 30 0.00066 37.2 6.0 53 220-272 75-140 (383)
122 PRK15454 ethanol dehydrogenase 51.3 28 0.00061 37.7 5.8 35 220-254 93-127 (395)
123 cd06292 PBP1_LacI_like_10 Liga 51.2 2.4E+02 0.0052 27.4 18.8 86 147-268 2-89 (273)
124 cd08193 HVD 5-hydroxyvalerate 50.8 30 0.00066 36.9 5.9 53 220-272 70-135 (376)
125 cd08550 GlyDH-like Glycerol_de 50.3 22 0.00047 37.6 4.6 52 220-276 64-115 (349)
126 cd08197 DOIS 2-deoxy-scyllo-in 50.3 26 0.00057 37.4 5.2 50 220-272 68-120 (355)
127 PRK09423 gldA glycerol dehydro 50.2 28 0.00062 37.0 5.5 46 221-271 72-117 (366)
128 PRK05637 anthranilate synthase 50.2 37 0.00081 33.5 6.0 52 227-291 38-89 (208)
129 cd08182 HEPD Hydroxyethylphosp 50.1 29 0.00062 36.9 5.5 53 220-272 64-133 (367)
130 cd08176 LPO Lactadehyde:propan 49.4 32 0.0007 36.7 5.8 53 220-272 72-137 (377)
131 cd08178 AAD_C C-terminal alcoh 49.1 39 0.00084 36.5 6.4 34 220-253 65-98 (398)
132 PRK15138 aldehyde reductase; P 48.9 32 0.00069 37.1 5.7 35 220-254 72-106 (387)
133 cd06320 PBP1_allose_binding Pe 48.3 2.7E+02 0.0058 27.1 17.2 47 222-272 46-92 (275)
134 TIGR00566 trpG_papA glutamine 48.3 32 0.00069 33.2 5.1 52 227-291 37-88 (188)
135 PF05036 SPOR: Sporulation rel 48.2 38 0.00083 26.6 4.7 50 213-262 9-71 (76)
136 PRK10586 putative oxidoreducta 48.0 24 0.00053 37.7 4.6 61 220-286 74-134 (362)
137 COG2910 Putative NADH-flavin r 46.7 44 0.00095 33.3 5.6 94 145-248 1-111 (211)
138 COG4981 Enoyl reductase domain 46.4 2E+02 0.0043 33.1 11.2 96 223-341 111-219 (717)
139 PF04392 ABC_sub_bind: ABC tra 46.3 1.5E+02 0.0033 30.2 10.0 74 146-248 1-74 (294)
140 PRK10624 L-1,2-propanediol oxi 46.2 39 0.00085 36.2 5.9 52 220-271 74-140 (382)
141 cd08198 DHQS-like2 Dehydroquin 46.1 30 0.00066 37.3 5.0 65 221-291 84-151 (369)
142 cd01542 PBP1_TreR_like Ligand- 45.7 2.8E+02 0.0061 26.6 11.6 83 147-266 2-84 (259)
143 TIGR01481 ccpA catabolite cont 45.6 3.4E+02 0.0073 27.4 18.7 84 145-268 60-144 (329)
144 cd08185 Fe-ADH1 Iron-containin 45.5 36 0.00077 36.4 5.4 53 220-272 70-140 (380)
145 TIGR00215 lpxB lipid-A-disacch 45.2 55 0.0012 35.0 6.8 135 146-302 7-145 (385)
146 cd08171 GlyDH-like2 Glycerol d 44.6 38 0.00083 35.7 5.4 48 220-272 65-112 (345)
147 CHL00101 trpG anthranilate syn 44.3 41 0.00088 32.4 5.1 49 229-290 39-87 (190)
148 cd01391 Periplasmic_Binding_Pr 43.8 2.7E+02 0.0058 25.8 13.3 138 220-372 45-191 (269)
149 TIGR02417 fruct_sucro_rep D-fr 43.6 3.6E+02 0.0078 27.2 17.1 67 145-244 61-127 (327)
150 PRK03692 putative UDP-N-acetyl 43.6 1E+02 0.0022 31.3 8.1 86 144-242 105-191 (243)
151 cd06349 PBP1_ABC_ligand_bindin 43.3 1.5E+02 0.0031 30.4 9.3 104 156-267 115-221 (340)
152 PF07905 PucR: Purine cataboli 43.2 46 0.001 29.9 5.0 71 197-270 31-107 (123)
153 COG0041 PurE Phosphoribosylcar 42.9 61 0.0013 31.1 5.8 9 262-270 80-88 (162)
154 cd08183 Fe-ADH2 Iron-containin 42.9 44 0.00094 35.7 5.6 35 220-254 62-96 (374)
155 PRK15052 D-tagatose-1,6-bispho 42.7 4.5E+02 0.0098 29.2 13.0 139 146-313 13-168 (421)
156 cd01545 PBP1_SalR Ligand-bindi 42.6 3.2E+02 0.0069 26.3 14.1 45 221-270 44-88 (270)
157 cd06297 PBP1_LacI_like_12 Liga 42.2 3.4E+02 0.0074 26.5 14.3 42 221-266 42-84 (269)
158 TIGR00237 xseA exodeoxyribonuc 41.9 1.5E+02 0.0033 32.6 9.6 103 140-274 125-232 (432)
159 cd08192 Fe-ADH7 Iron-containin 41.9 52 0.0011 35.0 5.9 56 220-275 68-140 (370)
160 cd08184 Fe-ADH3 Iron-containin 41.7 59 0.0013 34.7 6.3 55 220-274 65-135 (347)
161 cd03409 Chelatase_Class_II Cla 41.2 1.9E+02 0.0042 24.1 8.3 77 148-256 3-87 (101)
162 PRK00286 xseA exodeoxyribonucl 41.1 2E+02 0.0044 31.4 10.5 118 140-291 131-256 (438)
163 cd08549 G1PDH_related Glycerol 40.6 45 0.00098 35.1 5.2 49 221-275 69-117 (332)
164 smart00046 DAGKc Diacylglycero 40.6 26 0.00056 31.4 2.9 42 233-277 49-93 (124)
165 PRK02261 methylaspartate mutas 40.6 1.8E+02 0.0039 26.8 8.6 103 144-261 3-113 (137)
166 PLN02335 anthranilate synthase 40.0 46 0.001 33.1 4.9 46 229-287 58-103 (222)
167 PF03808 Glyco_tran_WecB: Glyc 39.6 1.8E+02 0.0039 27.6 8.7 87 144-242 48-135 (172)
168 COG1454 EutG Alcohol dehydroge 39.3 59 0.0013 35.4 5.8 34 221-254 74-107 (377)
169 COG0206 FtsZ Cell division GTP 39.0 54 0.0012 35.2 5.4 204 142-374 9-231 (338)
170 cd08187 BDH Butanol dehydrogen 38.9 58 0.0013 34.9 5.7 56 220-275 73-141 (382)
171 TIGR03405 Phn_Fe-ADH phosphona 38.8 64 0.0014 34.3 6.0 35 220-254 65-101 (355)
172 TIGR03822 AblA_like_2 lysine-2 38.7 4.9E+02 0.011 27.3 16.1 160 149-319 140-310 (321)
173 PRK15395 methyl-galactoside AB 38.6 4.6E+02 0.01 27.0 17.3 90 142-268 22-112 (330)
174 cd08188 Fe-ADH4 Iron-containin 37.7 73 0.0016 34.1 6.3 53 220-272 72-137 (377)
175 TIGR01916 F420_cofE F420-0:gam 37.4 2E+02 0.0043 29.6 8.9 59 307-374 88-151 (243)
176 TIGR01162 purE phosphoribosyla 37.4 60 0.0013 31.1 4.9 55 212-272 32-86 (156)
177 cd06283 PBP1_RegR_EndR_KdgR_li 37.3 3.8E+02 0.0082 25.7 18.4 120 147-313 2-122 (267)
178 TIGR00640 acid_CoA_mut_C methy 37.1 3E+02 0.0065 25.3 9.4 87 144-245 2-94 (132)
179 KOG4180 Predicted kinase [Gene 37.0 32 0.00069 36.8 3.2 68 195-268 45-135 (395)
180 cd06167 LabA_like LabA_like pr 36.8 54 0.0012 29.7 4.4 43 224-269 90-132 (149)
181 PLN02204 diacylglycerol kinase 36.8 60 0.0013 37.4 5.6 70 177-250 160-235 (601)
182 PF01936 NYN: NYN domain; Int 36.5 41 0.00089 29.9 3.6 47 224-273 86-132 (146)
183 cd08191 HHD 6-hydroxyhexanoate 36.2 70 0.0015 34.4 5.8 52 221-272 67-131 (386)
184 cd06298 PBP1_CcpA_like Ligand- 35.8 4E+02 0.0088 25.5 18.8 77 222-314 44-123 (268)
185 cd08175 G1PDH Glycerol-1-phosp 35.4 54 0.0012 34.6 4.8 45 221-271 69-113 (348)
186 PRK06203 aroB 3-dehydroquinate 35.1 70 0.0015 34.7 5.6 63 222-290 97-162 (389)
187 cd08169 DHQ-like Dehydroquinat 35.1 56 0.0012 34.7 4.9 65 220-290 67-134 (344)
188 cd08174 G1PDH-like Glycerol-1- 34.8 80 0.0017 33.0 5.9 54 220-278 61-115 (331)
189 cd08190 HOT Hydroxyacid-oxoaci 34.7 73 0.0016 34.7 5.8 34 220-253 67-100 (414)
190 cd02071 MM_CoA_mut_B12_BD meth 34.5 2.6E+02 0.0057 24.8 8.4 58 201-262 42-104 (122)
191 cd06277 PBP1_LacI_like_1 Ligan 34.0 4.4E+02 0.0096 25.5 11.9 40 222-268 47-86 (268)
192 cd00537 MTHFR Methylenetetrahy 34.0 74 0.0016 32.3 5.4 88 178-269 30-137 (274)
193 PRK15404 leucine ABC transport 33.8 3.3E+02 0.0071 28.7 10.4 97 164-268 149-248 (369)
194 PRK13111 trpA tryptophan synth 33.3 2.4E+02 0.0052 28.9 8.9 49 221-271 105-153 (258)
195 PF00289 CPSase_L_chain: Carba 32.8 64 0.0014 28.8 4.1 45 220-268 61-105 (110)
196 cd04234 AAK_AK AAK_AK: Amino A 32.8 3.5E+02 0.0076 26.7 9.8 37 206-245 4-42 (227)
197 cd06335 PBP1_ABC_ligand_bindin 32.7 3.9E+02 0.0085 27.5 10.6 62 203-267 160-224 (347)
198 PRK14987 gluconate operon tran 32.7 5.4E+02 0.012 26.0 20.1 85 145-268 64-148 (331)
199 cd06315 PBP1_ABC_sugar_binding 32.5 5E+02 0.011 25.6 11.0 65 146-244 2-67 (280)
200 smart00481 POLIIIAc DNA polyme 32.4 1.5E+02 0.0033 23.2 5.9 50 221-272 16-65 (67)
201 PRK13293 F420-0--gamma-glutamy 32.2 1.6E+02 0.0034 30.3 7.3 58 308-374 90-152 (245)
202 cd06342 PBP1_ABC_LIVBP_like Ty 32.1 3.6E+02 0.0077 27.1 10.0 102 157-267 116-221 (334)
203 cd06268 PBP1_ABC_transporter_L 31.8 4.7E+02 0.01 25.1 10.5 61 205-268 159-222 (298)
204 COG0371 GldA Glycerol dehydrog 31.8 66 0.0014 34.8 4.7 55 220-279 71-125 (360)
205 PF04405 ScdA_N: Domain of Unk 31.8 47 0.001 26.3 2.7 27 222-250 12-38 (56)
206 TIGR01378 thi_PPkinase thiamin 31.4 4.9E+02 0.011 25.5 10.5 67 178-245 20-98 (203)
207 cd06295 PBP1_CelR Ligand bindi 31.3 4.5E+02 0.0098 25.5 10.4 43 222-270 53-95 (275)
208 cd06326 PBP1_STKc_like Type I 31.2 4.7E+02 0.01 26.3 10.7 103 156-268 117-223 (336)
209 TIGR00696 wecB_tagA_cpsF bacte 31.2 2.4E+02 0.0052 27.2 8.1 85 145-242 49-134 (177)
210 cd06347 PBP1_ABC_ligand_bindin 30.5 3.4E+02 0.0073 27.2 9.5 60 205-267 160-222 (334)
211 PF07355 GRDB: Glycine/sarcosi 30.1 69 0.0015 34.5 4.4 96 143-240 226-347 (349)
212 PRK06774 para-aminobenzoate sy 30.1 58 0.0012 31.3 3.6 50 227-289 37-86 (191)
213 cd01743 GATase1_Anthranilate_S 29.8 75 0.0016 30.2 4.3 45 231-291 40-87 (184)
214 PRK06895 putative anthranilate 29.7 72 0.0016 30.6 4.2 44 233-289 43-86 (190)
215 cd06274 PBP1_FruR Ligand bindi 29.6 5.2E+02 0.011 24.9 18.8 42 221-268 43-84 (264)
216 cd06294 PBP1_ycjW_transcriptio 29.1 5.2E+02 0.011 24.8 14.0 41 222-268 49-89 (270)
217 PRK08007 para-aminobenzoate sy 29.0 71 0.0015 30.8 4.1 76 196-289 10-86 (187)
218 PF00710 Asparaginase: Asparag 28.4 3.7E+02 0.0081 28.2 9.6 60 220-280 57-118 (313)
219 PF00731 AIRC: AIR carboxylase 28.3 61 0.0013 30.8 3.3 53 213-271 35-87 (150)
220 COG1122 CbiO ABC-type cobalt t 28.2 1.8E+02 0.0038 29.5 6.9 98 270-371 95-196 (235)
221 cd06329 PBP1_SBP_like_3 Peripl 28.1 4.3E+02 0.0094 27.0 10.0 63 203-268 165-233 (342)
222 cd00381 IMPDH IMPDH: The catal 28.0 7.2E+02 0.016 26.2 11.7 104 221-339 121-225 (325)
223 PRK06843 inosine 5-monophospha 28.0 8.5E+02 0.018 26.9 12.9 102 220-340 179-285 (404)
224 cd06346 PBP1_ABC_ligand_bindin 27.8 5.2E+02 0.011 26.0 10.4 62 203-267 159-223 (312)
225 KOG1116 Sphingosine kinase, in 27.7 37 0.0008 38.7 2.1 146 178-331 181-334 (579)
226 COG2086 FixA Electron transfer 27.6 6.3E+02 0.014 26.1 10.8 114 269-408 21-137 (260)
227 PF02401 LYTB: LytB protein; 27.6 1.6E+02 0.0035 30.7 6.6 77 221-299 198-278 (281)
228 PRK14021 bifunctional shikimat 27.5 61 0.0013 36.7 3.7 64 221-290 254-320 (542)
229 cd03411 Ferrochelatase_N Ferro 27.3 4.3E+02 0.0092 24.7 8.9 133 147-297 3-142 (159)
230 TIGR01501 MthylAspMutase methy 27.2 4.5E+02 0.0097 24.4 8.8 85 146-245 3-93 (134)
231 COG1303 Uncharacterized protei 26.9 3.4E+02 0.0074 26.4 8.0 90 148-255 34-124 (179)
232 cd01744 GATase1_CPSase Small c 26.6 1.4E+02 0.003 28.3 5.6 49 229-292 35-86 (178)
233 PRK05096 guanosine 5'-monophos 26.3 3.3E+02 0.0073 29.4 8.7 105 221-341 137-243 (346)
234 PF09651 Cas_APE2256: CRISPR-a 26.3 1.9E+02 0.0042 26.6 6.2 111 222-342 7-126 (136)
235 cd06296 PBP1_CatR_like Ligand- 26.2 5.9E+02 0.013 24.5 16.6 42 221-268 43-84 (270)
236 TIGR00732 dprA DNA protecting 26.1 6.7E+02 0.014 25.0 11.1 104 150-274 77-193 (220)
237 TIGR00262 trpA tryptophan synt 25.8 1.1E+02 0.0024 31.2 5.0 49 221-271 103-151 (256)
238 TIGR01861 ANFD nitrogenase iro 25.8 2.2E+02 0.0047 32.3 7.6 107 146-254 131-249 (513)
239 PRK01045 ispH 4-hydroxy-3-meth 25.6 1.9E+02 0.0042 30.5 6.8 79 220-300 198-280 (298)
240 PF13458 Peripla_BP_6: Peripla 25.3 6.5E+02 0.014 25.2 10.6 100 156-263 115-217 (343)
241 cd06314 PBP1_tmGBP Periplasmic 25.1 6.4E+02 0.014 24.5 16.0 42 222-268 44-85 (271)
242 cd06354 PBP1_BmpA_PnrA_like Pe 25.1 6.6E+02 0.014 24.7 10.7 63 146-242 1-66 (265)
243 PLN00197 beta-amylase; Provisi 25.1 4.8E+02 0.01 30.0 10.0 101 221-321 128-278 (573)
244 TIGR00238 KamA family protein. 25.0 8.4E+02 0.018 25.8 12.7 156 148-317 162-331 (331)
245 TIGR01302 IMP_dehydrog inosine 25.0 4.6E+02 0.01 29.0 9.9 102 221-341 251-357 (450)
246 PRK12767 carbamoyl phosphate s 25.0 5.4E+02 0.012 26.2 10.0 40 221-261 57-96 (326)
247 cd02072 Glm_B12_BD B12 binding 24.8 2.2E+02 0.0048 26.3 6.3 100 146-261 1-109 (128)
248 cd01539 PBP1_GGBP Periplasmic 24.7 7.2E+02 0.016 24.9 18.9 43 222-268 46-88 (303)
249 PRK13805 bifunctional acetalde 24.2 1.3E+02 0.0029 36.0 5.9 33 221-253 527-559 (862)
250 PRK03359 putative electron tra 24.1 2.6E+02 0.0057 28.7 7.3 52 224-276 71-127 (256)
251 PRK04011 peptide chain release 24.0 3.4E+02 0.0074 29.8 8.6 22 321-342 300-321 (411)
252 PRK11303 DNA-binding transcrip 23.8 7.5E+02 0.016 24.8 20.4 67 145-244 62-128 (328)
253 PRK05261 putative phosphoketol 23.8 1.1E+03 0.023 28.4 13.0 178 129-315 28-282 (785)
254 TIGR01303 IMP_DH_rel_1 IMP deh 23.7 7.3E+02 0.016 27.9 11.2 103 221-340 252-357 (475)
255 PF04208 MtrA: Tetrahydrometha 23.4 1.4E+02 0.0031 29.2 4.8 54 207-261 39-95 (176)
256 TIGR00676 fadh2 5,10-methylene 23.3 1.3E+02 0.0028 30.8 5.0 55 215-269 66-134 (272)
257 PRK13111 trpA tryptophan synth 23.3 7.7E+02 0.017 25.3 10.5 131 234-375 13-154 (258)
258 PLN02821 1-hydroxy-2-methyl-2- 23.2 1.8E+02 0.0039 32.5 6.2 53 220-273 349-401 (460)
259 cd06289 PBP1_MalI_like Ligand- 23.1 6.6E+02 0.014 24.0 13.8 42 222-268 44-85 (268)
260 PF04122 CW_binding_2: Putativ 23.1 1.4E+02 0.0031 25.0 4.4 39 208-248 49-87 (92)
261 PLN02803 beta-amylase 23.1 5.5E+02 0.012 29.5 9.9 101 221-321 108-258 (548)
262 cd02067 B12-binding B12 bindin 23.0 4.6E+02 0.01 22.7 7.9 27 221-247 66-93 (119)
263 COG0414 PanC Panthothenate syn 22.9 1.2E+02 0.0025 31.9 4.4 36 303-339 17-53 (285)
264 TIGR03100 hydr1_PEP hydrolase, 22.9 7.7E+02 0.017 24.6 10.6 86 235-328 28-118 (274)
265 PRK05660 HemN family oxidoredu 22.8 78 0.0017 34.0 3.4 67 232-298 57-138 (378)
266 PF09288 UBA_3: Fungal ubiquit 22.8 1.4E+02 0.0031 23.8 3.9 45 197-256 8-53 (55)
267 PF13685 Fe-ADH_2: Iron-contai 22.8 69 0.0015 32.8 2.8 50 221-275 63-112 (250)
268 PF13727 CoA_binding_3: CoA-bi 22.7 1.4E+02 0.003 27.1 4.6 45 221-265 129-173 (175)
269 PTZ00314 inosine-5'-monophosph 22.0 7E+02 0.015 28.1 10.7 97 224-340 271-373 (495)
270 cd06334 PBP1_ABC_ligand_bindin 21.9 9.1E+02 0.02 25.1 11.9 103 157-267 117-226 (351)
271 PRK12360 4-hydroxy-3-methylbut 21.9 1.1E+02 0.0025 31.9 4.2 52 220-273 197-248 (281)
272 PF07755 DUF1611: Protein of u 21.8 7.3E+02 0.016 26.3 10.2 176 142-339 33-220 (301)
273 cd04509 PBP1_ABC_transporter_G 21.7 7.1E+02 0.015 23.8 10.3 62 204-268 159-225 (299)
274 cd06337 PBP1_ABC_ligand_bindin 21.7 2.3E+02 0.0051 29.4 6.6 62 204-268 171-235 (357)
275 PRK13609 diacylglycerol glucos 21.6 3.4E+02 0.0075 28.3 7.9 114 143-266 3-131 (380)
276 PRK10247 putative ABC transpor 21.5 1.6E+02 0.0036 28.7 5.1 60 313-373 136-197 (225)
277 KOG4435 Predicted lipid kinase 21.5 1.4E+02 0.003 33.0 4.8 59 211-273 96-154 (535)
278 PRK08857 para-aminobenzoate sy 21.4 1.7E+02 0.0037 28.2 5.1 48 229-289 39-86 (193)
279 PRK14462 ribosomal RNA large s 21.1 4.2E+02 0.0092 28.6 8.5 162 148-325 163-349 (356)
280 PF10126 Nit_Regul_Hom: Unchar 21.1 2.8E+02 0.006 25.2 5.8 75 184-270 26-102 (110)
281 TIGR01284 alt_nitrog_alph nitr 20.9 3.4E+02 0.0073 30.1 7.9 105 147-253 129-245 (457)
282 COG1922 WecG Teichoic acid bio 20.8 4E+02 0.0087 27.5 7.8 87 144-242 108-195 (253)
283 TIGR01769 GGGP geranylgeranylg 20.8 3.1E+02 0.0066 27.3 6.8 59 220-280 11-71 (205)
284 PF00117 GATase: Glutamine ami 20.7 1E+02 0.0023 29.1 3.4 50 230-294 39-91 (192)
285 PRK12446 undecaprenyldiphospho 20.7 6.2E+02 0.013 26.7 9.6 97 236-334 4-116 (352)
286 TIGR01752 flav_long flavodoxin 20.6 2.8E+02 0.006 26.0 6.3 63 143-207 77-160 (167)
287 PRK07765 para-aminobenzoate sy 20.5 1.6E+02 0.0035 29.1 4.8 45 232-291 45-92 (214)
288 cd06305 PBP1_methylthioribose_ 20.5 7.7E+02 0.017 23.7 20.2 125 146-314 1-127 (273)
289 PRK13210 putative L-xylulose 5 20.5 6.4E+02 0.014 25.1 9.3 49 221-269 17-74 (284)
290 PLN02801 beta-amylase 20.4 6.8E+02 0.015 28.6 9.9 101 221-321 38-189 (517)
291 TIGR02634 xylF D-xylose ABC tr 20.4 8.9E+02 0.019 24.4 14.1 43 222-268 43-85 (302)
292 PLN02705 beta-amylase 20.3 6.7E+02 0.015 29.3 10.0 102 222-323 270-422 (681)
293 KOG2178 Predicted sugar kinase 20.3 45 0.00097 36.4 0.9 55 232-301 167-223 (409)
294 cd06290 PBP1_LacI_like_9 Ligan 20.1 7.8E+02 0.017 23.6 18.5 25 221-245 43-67 (265)
295 TIGR00888 guaA_Nterm GMP synth 20.1 93 0.002 29.7 3.0 47 229-290 37-85 (188)
296 PRK11366 puuD gamma-glutamyl-g 20.0 3.6E+02 0.0079 27.3 7.4 45 197-243 27-71 (254)
297 PRK02399 hypothetical protein; 20.0 1.4E+02 0.003 32.9 4.5 87 177-272 31-126 (406)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=3.9e-122 Score=984.56 Aligned_cols=459 Identities=80% Similarity=1.302 Sum_probs=437.6
Q ss_pred cCCCcceeccccccccccCCCCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCCCccc
Q 009444 49 SRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVH 128 (534)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~r~~~ 128 (534)
.++.|+++|+ .||++|+||||.+|.|+.|++++||..|+.++.....||++++.|+..+..++...++.+
T Consensus 2 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~ 71 (484)
T PLN02564 2 SSKPKIVTGD----------AGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTH 71 (484)
T ss_pred CCcCccccCC----------CceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCcc
Confidence 4678999999 999999999999999999999999999999999899999999999998876666678899
Q ss_pred ccccCCccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhc
Q 009444 129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208 (534)
Q Consensus 129 F~~ag~r~~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~ 208 (534)
|++||||+++||+|+++|||||||||||||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++
T Consensus 72 ~~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~ 151 (484)
T PLN02564 72 FRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKR 151 (484)
T ss_pred ceecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhC
Confidence 99999999999999999999999999999999999999999887788889999999999999999999999999999999
Q ss_pred CCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhH
Q 009444 209 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (534)
Q Consensus 209 GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTA 288 (534)
|||+|||||+++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||
T Consensus 152 GGTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTA 231 (484)
T PLN02564 152 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA 231 (484)
T ss_pred CCceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhCCcEEE
Q 009444 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI 368 (534)
Q Consensus 289 v~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~~~~vI 368 (534)
+++++++|+++++||.|+++||||||+|||+|||||+++|||+++||+|||||.||+++++.+++++|++|+++++|+||
T Consensus 232 v~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VI 311 (484)
T PLN02564 232 VEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVI 311 (484)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEE
Confidence 99999999999999999988999999999999999999999996699999999999999988999999999999999999
Q ss_pred EEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHH
Q 009444 369 VVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLA 448 (534)
Q Consensus 369 VvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG 448 (534)
|||||+++.++.+.......+|++||++|++++.||+++|+++++++.++.+++||++|||+|||++|+++|++||++||
T Consensus 312 VVAEGagq~~~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG 391 (484)
T PLN02564 312 VVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLA 391 (484)
T ss_pred EEeCCCccchhhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHH
Confidence 99999998877665433356899999999999999999999999545556689999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceEEEEeCCeeeeeeHHHHhhhcCCCCCCHHHHHHHHHhcCCCCCCChhhHhhhhhh
Q 009444 449 HSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQEK 517 (534)
Q Consensus 449 ~~AV~~~~~G~tg~mvgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~~~ 517 (534)
+.|||++|+|+||+||+++|++++++||++++..+|+|++++++|.++|++||||+|++++++.+.+++
T Consensus 392 ~~AV~~~~aG~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~~~ 460 (484)
T PLN02564 392 HSAVHGAMAGYTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKRE 460 (484)
T ss_pred HHHHHHHHcCCCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999988864
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3.6e-111 Score=896.52 Aligned_cols=417 Identities=51% Similarity=0.852 Sum_probs=391.8
Q ss_pred CCCCCCCCCCCcccccccccccccChHHHHHHHhccC------CCCcccccccCCccccccCCCCeeEEEEccCCCCchh
Q 009444 86 LPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKD------SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGI 159 (534)
Q Consensus 86 ~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~------~~r~~~F~~ag~r~~~~f~~~~~riaIvtsGG~aPGm 159 (534)
-+.+++||..+..++... +||++++.|+..+..++. ..+...|++||||+++||+|+++||||||||||||||
T Consensus 17 ~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PGm 95 (443)
T PRK06830 17 ECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPGL 95 (443)
T ss_pred CCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchHH
Confidence 466788999888888777 899999999987765432 1356799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEccccccccc---CCcccCCHHHHhhHhhcCCcceeecCCCchHHHHHHHHHHhCCcE
Q 009444 160 NTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQ 236 (534)
Q Consensus 160 NavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~ 236 (534)
|++||++|+.+.+.|++.+||||++||+||++ +++++|+|+.|++|+++|||+|||||++++.++++++|++++||+
T Consensus 96 N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~ 175 (443)
T PRK06830 96 NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINI 175 (443)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCCE
Confidence 99999999999877888999999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEec
Q 009444 237 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLM 316 (534)
Q Consensus 237 LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvM 316 (534)
||+|||||||++|++|++++++++++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||||||+|
T Consensus 176 L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvM 255 (443)
T PRK06830 176 LFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLM 255 (443)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhCCcEEEEEeCCCCchhhcccCCccccccccCCcc
Q 009444 317 GRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRL 396 (534)
Q Consensus 317 GR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~ 396 (534)
||+|||||+++|||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+... ...+|++||+.
T Consensus 256 GR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~----~~~~Da~gn~~ 331 (443)
T PRK06830 256 GRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDD----TGETDASGNPK 331 (443)
T ss_pred CCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCcccccccc----cccccccCCcc
Confidence 99999999999999867999999999999999999999999999999999999999998766543 23589999999
Q ss_pred hhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCeeeeeeH
Q 009444 397 LLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPI 476 (534)
Q Consensus 397 l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~~~~~iPl 476 (534)
+.+++.+|+++|+++++. ..+.+++||++|||+|||++||++|++||++||+.|||++|+|+||+||++++++++++||
T Consensus 332 l~~ig~~L~~~i~~~~~~-~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl 410 (443)
T PRK06830 332 LGDIGLFLKDRIKEYFKA-RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPI 410 (443)
T ss_pred cccHHHHHHHHHHHHhcc-cCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeH
Confidence 999999999999999963 3445789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHhcCCCCCCCh
Q 009444 477 ARVTETQKTVKLTDRMWARLLASTNQPSFLNC 508 (534)
Q Consensus 477 ~~v~~~~k~v~~~~~~w~~~l~~t~qp~f~~~ 508 (534)
++++..+|+|++++.+|.++|++||||+|+.+
T Consensus 411 ~~v~~~~k~vd~~~~~w~~~l~~tgq~~~~~~ 442 (443)
T PRK06830 411 DLAVSKRKKVNPEGDLWRSVLESTGQPRSMGN 442 (443)
T ss_pred HHHhccCCCCCCccHHHHHHHHHhCCCccccc
Confidence 99999889999999999999999999999875
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=5e-110 Score=891.84 Aligned_cols=408 Identities=52% Similarity=0.862 Sum_probs=382.6
Q ss_pred cccccccChHHHHHHHhccC--CCCcccccccCCccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEE
Q 009444 103 KQTFVSPEDAVAQNIVIQKD--SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEIL 180 (534)
Q Consensus 103 ~~~~V~~t~~V~~~~~~~~~--~~r~~~F~~ag~r~~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~ 180 (534)
...||++++.|+..+..++. ..+...|++||||+++||+|+++|||||||||||||||+|||++|+.+.+.|++.+||
T Consensus 44 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~ 123 (459)
T PTZ00286 44 REAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIY 123 (459)
T ss_pred ccceecCCCeEEeecccCccccccccchheecCCceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34899999999988776542 2356899999999999999999999999999999999999999999998778889999
Q ss_pred EEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC
Q 009444 181 GIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260 (534)
Q Consensus 181 Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g 260 (534)
||++||+||+++++++|+|+.|++|+++|||+|||||+++++++|+++|++++||+||+||||||+++|++|++++++++
T Consensus 124 Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g 203 (459)
T PTZ00286 124 GAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRK 203 (459)
T ss_pred EEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecC
Q 009444 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIP 340 (534)
Q Consensus 261 ~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIP 340 (534)
++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||||||+|||+|||||+++|||+++||+||||
T Consensus 204 ~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIP 283 (459)
T PTZ00286 204 LNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIP 283 (459)
T ss_pred CCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999559999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHhCCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEE
Q 009444 341 ESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMI 420 (534)
Q Consensus 341 E~pf~le~~~~l~e~I~~rl~~~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~ 420 (534)
|.||+++ +++++|++|+++++|+|||||||+++.+.+..+ ...+|++||++|+|+|.+|+++|+++++.+ +..+
T Consensus 284 E~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~~~~--~~~~D~~Gn~~l~dig~~L~~~I~~~~~~~-~~~~ 357 (459)
T PTZ00286 284 EFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADL--DLGTDASGNKKLWDIGVYLKDEITKYLKKK-KPEH 357 (459)
T ss_pred CCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCccccccccc--cccccccCCcccccHHHHHHHHHHHHHhhc-cCce
Confidence 9999987 899999999999999999999999987766543 235899999999999999999999999643 4568
Q ss_pred eeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCeeeeeeHHHH-hhhcCCCCCCHHHHHHHHHh
Q 009444 421 NMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARV-TETQKTVKLTDRMWARLLAS 499 (534)
Q Consensus 421 ~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~~~~~iPl~~v-~~~~k~v~~~~~~w~~~l~~ 499 (534)
++||++|||+|||++||++|++||++||+.|||++|+|+||+||++++++++++||+++ ...+++|+++++||.+++++
T Consensus 358 ~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl~~v~~~~~~~v~~~~~~w~~~~~~ 437 (459)
T PTZ00286 358 TVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAI 437 (459)
T ss_pred EEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeHHHHhCCCccccCcchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999994 55678899999999999999
Q ss_pred cCCCCCCChhhHhhhhh
Q 009444 500 TNQPSFLNCSEVLHHQE 516 (534)
Q Consensus 500 t~qp~f~~~~~~~~~~~ 516 (534)
||||+|+++++...+++
T Consensus 438 tgqp~~~~~~~~~~~~~ 454 (459)
T PTZ00286 438 TGQPSFLNNEEIERHQR 454 (459)
T ss_pred cCCCCccccHHHHHHHH
Confidence 99999999988777765
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=3.9e-103 Score=829.61 Aligned_cols=374 Identities=55% Similarity=0.937 Sum_probs=350.7
Q ss_pred ccccccCCccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCC--cccCCHHHHhh
Q 009444 127 VHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN--TLTLSPKVVND 204 (534)
Q Consensus 127 ~~F~~ag~r~~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~--~~~L~~~~V~~ 204 (534)
..|+|||||+++||+|+++|||||||||||||||+|||++|+.+.. ++..+||||++||+||++++ .++|+|++|++
T Consensus 36 ~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~ 114 (411)
T PLN02884 36 QWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQN 114 (411)
T ss_pred hhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHH
Confidence 5789999999999999999999999999999999999999998753 66668999999999999998 66789999999
Q ss_pred HhhcCCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCC
Q 009444 205 IHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (534)
Q Consensus 205 i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~G 284 (534)
|+++|||+|||||++.++++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||
T Consensus 115 i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiG 194 (411)
T PLN02884 115 IHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFG 194 (411)
T ss_pred HHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhCC
Q 009444 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (534)
Q Consensus 285 FdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~~ 364 (534)
||||+++++++|++++.||.|+++||||||+|||+|||||+++|||++.||+|||||.||+++++++++++|+++++.++
T Consensus 195 FdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k~ 274 (411)
T PLN02884 195 FDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKG 274 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCCCCcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999998866789999999999999999999999339999999999999888899999999999889
Q ss_pred cEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHH
Q 009444 365 HMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYC 444 (534)
Q Consensus 365 ~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a 444 (534)
|+|||||||+++.+.... ..+|++||++|++++.+|+++|+++++ +....+++|+++|||+|||++|+++||++|
T Consensus 275 ~~iIVVAEG~g~~~~~~~----~~~Da~G~~~l~~~~~~La~~i~~~~~-~~g~~~~~r~~~lGy~qRgg~p~a~Dr~la 349 (411)
T PLN02884 275 SAVVCVAEGAGQDLLQKT----NATDASGNPVLGDIGVHLQQEIKKHFK-DIGVPADVKYIDPTYMIRACRANASDAILC 349 (411)
T ss_pred cEEEEEeccccccccccc----ccccccCCcccCcHHHHHHHHHHHHhh-ccCCCceEEEccCCccccCCCCCHHHHHHH
Confidence 999999999976544321 248999999999999999999999875 223346899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCceEEEEeCCeeeeeeHHHHhhhcCCCCCCHHHHHHHHHhcCCCCCC
Q 009444 445 TLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFL 506 (534)
Q Consensus 445 ~~LG~~AV~~~~~G~tg~mvgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l~~t~qp~f~ 506 (534)
++||+.||+++++|+||+||+++++++.++||++++..+|+|++++++|++++++||||+|.
T Consensus 350 ~~lG~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~~~k~vd~~~~~~~~~~~~~gqp~~~ 411 (411)
T PLN02884 350 TVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNSRMWHRCLTSTGQPDFH 411 (411)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhcCCCCCCCCcHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999988899999999999999999999994
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=1.1e-89 Score=722.45 Aligned_cols=350 Identities=25% Similarity=0.411 Sum_probs=315.6
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHH--HH-hhHhhcCCcceeecCCCc-
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK--VV-NDIHKRGGTILRTSRGGH- 220 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~--~V-~~i~~~GGs~LGTsR~~~- 220 (534)
+||||+||||||||||++||++++.+...+.+.+||||++||+||+++++++|++. .+ +.|+++|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 4 KKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 59999999999999999999999987654466799999999999999999999986 44 459999999999999743
Q ss_pred ----------------hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCC
Q 009444 221 ----------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (534)
Q Consensus 221 ----------------d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~G 284 (534)
++++++++|++++||+||+||||||+++|++|++++.+++++|+||||||||||||++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~G 163 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLG 163 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcC
Confidence 3689999999999999999999999999999999999888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhc-------------------CCCcEEecCCCCCC
Q 009444 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS-------------------RDVDCCLIPESPFY 345 (534)
Q Consensus 285 FdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs-------------------~~ad~ilIPE~pf~ 345 (534)
||||+++++++|++++.||.|+++.++|||||||+|||||+++|||+ .+||+|||||.||+
T Consensus 164 f~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~~~~ 243 (403)
T PRK06555 164 AWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAFD 243 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCCCCC
Confidence 99999999999999999999998666666999999999999999992 38999999999999
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEEeCCCCchhhcccCCc---cccccccCCcchhh--hHHHHHHHHHhhccccceeEE
Q 009444 346 LEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPA---VDEKDASGNRLLLD--IGLWLTQKIKDHFTKVQKMMI 420 (534)
Q Consensus 346 le~~~~l~e~I~~rl~~~~~~vIVvaEGa~~~~~~~~l~~---~~~~Da~Gn~~l~~--ig~~L~~~I~e~~~~~~~~~~ 420 (534)
++ ++++.|++++++++|+|||||||+.+.+..+.+.. ...+|++||+++.+ ++.+|+++|+++++.+
T Consensus 244 ~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e----- 315 (403)
T PRK06555 244 LE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE----- 315 (403)
T ss_pred HH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC-----
Confidence 87 79999999998899999999999976544333211 12489999999986 6899999999988631
Q ss_pred eeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEE---eCCeeeeeeHHHHhhhcCCCCCCHHHHHHHH
Q 009444 421 NMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGP---VNSRHAYIPIARVTETQKTVKLTDRMWARLL 497 (534)
Q Consensus 421 ~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi---~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l 497 (534)
.+|+++|||+|||++|+++|+++|++||..||+++++|.|| ||++ +|++++++||+++.. .|+++++.+||+++|
T Consensus 316 ~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~~~~~ 393 (403)
T PRK06555 316 KVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWFTELL 393 (403)
T ss_pred ceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHHHHHH
Confidence 26678999999999999999999999999999999999999 6787 799999999999887 588999999999999
Q ss_pred HhcCCCC
Q 009444 498 ASTNQPS 504 (534)
Q Consensus 498 ~~t~qp~ 504 (534)
++||||.
T Consensus 394 ~~~~q~~ 400 (403)
T PRK06555 394 DEIGQPY 400 (403)
T ss_pred HhhCCCC
Confidence 9999996
No 6
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=7e-85 Score=682.54 Aligned_cols=332 Identities=30% Similarity=0.429 Sum_probs=302.6
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CcccCCHHHHhhHhhcCCcceeecCC-C-
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRG-G- 219 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~-~- 219 (534)
.+||||+||||||||||++||++++.+.+.++ .+||||++||+||+++ ++++|+|.+|++|+++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g-~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcCC-CEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 46999999999999999999999998875444 5999999999999999 89999999999999999999999973 1
Q ss_pred -----------chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhH
Q 009444 220 -----------HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (534)
Q Consensus 220 -----------~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTA 288 (534)
+++++++++|++++||+||+||||||+++|++|++. ..|+||||||||||||++||+|||||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 246899999999999999999999999999999863 2578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEE
Q 009444 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMV 367 (534)
Q Consensus 289 v~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~v 367 (534)
+++++++||+++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ ++++|
T Consensus 158 ~~~~~~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~i 232 (360)
T PRK14071 158 VNIATEALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCL 232 (360)
T ss_pred HHHHHHHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEE
Confidence 999999999999999996 689999999999999999999999 899999999999987 799999999987 78999
Q ss_pred EEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHH
Q 009444 368 IVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLL 447 (534)
Q Consensus 368 IVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~L 447 (534)
||||||+....- + ....+|++||+++++++++|+++|+++++ +++|+..|||+|||+.|+++||.+|++|
T Consensus 233 ivvsEG~~~~~g-~---~~~~~d~~g~~~~~~~~~~l~~~i~~~~g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~l 302 (360)
T PRK14071 233 VVVSEAVRTEEG-E---QVTKTQALGEDRYGGIGQYLAEQIAERTG------AETRVTVLGHIQRGGIPSPRDRLLASAF 302 (360)
T ss_pred EEEcCCCccccc-c---cccccccccccccCcHHHHHHHHHHHhcC------CCeeEEecChhhcCCCCChHHHHHHHHH
Confidence 999999964211 1 12237999999999999999999999876 3566778999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEeCCeeeeeeHHHHhhhcCCCCCCHHHHHHH
Q 009444 448 AHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARL 496 (534)
Q Consensus 448 G~~AV~~~~~G~tg~mvgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~ 496 (534)
|..||+++++|+||+||+++++++.++||+++++.+|.+++++.+|.-.
T Consensus 303 G~~Av~~~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~~ 351 (360)
T PRK14071 303 GVAAVDLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKTA 351 (360)
T ss_pred HHHHHHHHHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHHH
Confidence 9999999999999999999999999999999998889999988777654
No 7
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=5e-85 Score=733.73 Aligned_cols=401 Identities=21% Similarity=0.255 Sum_probs=355.5
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC----------C
Q 009444 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG----------P 134 (534)
Q Consensus 70 ~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag----------~ 134 (534)
.+..+||.+|++.++++|.+++.+++|++..+|++++++.|+.|..++. +++| +|+.+|.++. +
T Consensus 300 ~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~ 378 (745)
T TIGR02478 300 RQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIK-EKRFAEAMRLRGREFVENLATFLFLSIPDQ 378 (745)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHH-hccHHHHHHhcCHHHHHHHHHHHhhhccCC
Confidence 5778999999999999999999999999999999999999999999988 7888 6999998865 2
Q ss_pred cccccc-CCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcce
Q 009444 135 REKVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL 213 (534)
Q Consensus 135 r~~~~f-~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~L 213 (534)
+..... ..+++||||+||||||||||++||++++.+.. .+++||||++||+||+++++.+|+|.+|++|+++|||+|
T Consensus 379 ~~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L 456 (745)
T TIGR02478 379 DKKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA--RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSEL 456 (745)
T ss_pred ccccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh--CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCccc
Confidence 222222 34568999999999999999999999998864 457999999999999999999999999999999999999
Q ss_pred eecCCC--chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-CCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 214 RTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 214 GTsR~~--~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
||+|+. +++++++++|++++||+||+||||||+++|.+|+++..++ ++.|+||||||||||||++||+|||||||++
T Consensus 457 gtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~ 536 (745)
T TIGR02478 457 GTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN 536 (745)
T ss_pred ccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH
Confidence 999984 4799999999999999999999999999999999986665 3779999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhC--CcEEE
Q 009444 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVI 368 (534)
Q Consensus 291 ~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~--~~~vI 368 (534)
+++++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||++++..++++.+.+|++.. .+.+|
T Consensus 537 ~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~ii 615 (745)
T TIGR02478 537 EITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKLI 615 (745)
T ss_pred HHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 99999999999999988899999999999999999999999 8999999999999986556666888888774 67899
Q ss_pred EEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHH
Q 009444 369 VVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLA 448 (534)
Q Consensus 369 VvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG 448 (534)
+++||+...+. ...|++.|+++.+. .+++|+.+|||+|||++|+++||++|++||
T Consensus 616 v~~Eg~~~~~~---------------------~~~l~~~i~~e~~~----~~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG 670 (745)
T TIGR02478 616 LRNENASKNYT---------------------TDFIARIISEEAKG----RFDARTAVLGHMQQGGSPSPFDRNRATRLA 670 (745)
T ss_pred EEeCCCccCCC---------------------HHHHHHHHHHHhcC----CCceEeccCCccccCCCCCHHHHHHHHHHH
Confidence 99999853221 24577777655431 367899999999999999999999999999
Q ss_pred HHHHHHHHcC------------CCceEEEEeCCeeeeeeHHHHhhhcC---CCCCCHHHHHHHHHh
Q 009444 449 HSAVHGAMAG------------FTGFTVGPVNSRHAYIPIARVTETQK---TVKLTDRMWARLLAS 499 (534)
Q Consensus 449 ~~AV~~~~~G------------~tg~mvgi~~~~~~~iPl~~v~~~~k---~v~~~~~~w~~~l~~ 499 (534)
..||+++++| ++++||++++++++++||+++..... +..|+..||..+...
T Consensus 671 ~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~~ 736 (745)
T TIGR02478 671 IRAVDFIEEKIKKSADKLGADDTSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRPL 736 (745)
T ss_pred HHHHHHHHhCCcccccccccCCCccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHHH
Confidence 9999999998 79999999999999999998654432 344889999988765
No 8
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.3e-84 Score=689.55 Aligned_cols=340 Identities=23% Similarity=0.328 Sum_probs=304.1
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhh---HhhcCCcceeecCCCc
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND---IHKRGGTILRTSRGGH 220 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~---i~~~GGs~LGTsR~~~ 220 (534)
.+||||+||||||||||++||++++.+....+..+||||++||+||+++++++|+..++++ |.++|||+|||||++.
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~ 82 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKL 82 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCC
Confidence 3699999999999999999999999887543448999999999999999999999887777 8999999999999853
Q ss_pred --------hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHH
Q 009444 221 --------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (534)
Q Consensus 221 --------d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~ 292 (534)
++++++++|++++||+||+||||||+++|++|+++++++|.+++||||||||||||++||+|||||||++++
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i 162 (416)
T PRK14072 83 KSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYI 162 (416)
T ss_pred cccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH----HHhhhhcCCceEEEEecCCCcchHHHHHhhh-----cCCCcEEecCCCCCCCCChhhHHHHHHHHHHhC
Q 009444 293 QRAINAA----HVEVESVENGVGIVKLMGRYSGFISMYATLA-----SRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363 (534)
Q Consensus 293 ~~ai~~i----~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLA-----s~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~ 363 (534)
+++|+++ +.++.|| ||||||||||+|||||+++||| + +||+|||||.||+++ .+++.|+++++++
T Consensus 163 ~~ai~~l~~D~~~ta~s~--Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~---~~~~~i~~~~~~~ 236 (416)
T PRK14072 163 ATSVLEAALDVAAMANTS--KVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEE---KFLADVRAIVKRY 236 (416)
T ss_pred HHHHHHHHHHHHhcccCc--eEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHH---HHHHHHHHHHHhC
Confidence 9999999 4444443 7999999999999999999999 7 899999999999887 8999999999889
Q ss_pred CcEEEEEeCCCCc---hhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCC--CCh
Q 009444 364 GHMVIVVAEGAGQ---EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP--SNG 438 (534)
Q Consensus 364 ~~~vIVvaEGa~~---~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~--p~a 438 (534)
+|+|||||||+.. .++.+. ...+|++||+++++++++|+++|+++++ +++|+..|||+|||+. |++
T Consensus 237 ~~~ivvVaEG~~~~~g~~i~e~---~~~~D~~gh~~l~g~~~~La~~i~~~~g------~~~R~~~LG~~QRgg~~~ps~ 307 (416)
T PRK14072 237 GYCVVVVSEGIRDADGKFIAEA---GLAEDAFGHAQLGGVAPVLANLIKEKLG------KKVHWAVLDYLQRAARHIASK 307 (416)
T ss_pred CCeEEEEecCcccccccchhcc---ccccCCCCCcccccHHHHHHHHHHHHhC------CeEEEEeCChhhhCCCCCCCH
Confidence 9999999999853 222221 1236999999999999999999999886 4578899999999998 999
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHHHHhhhcCCCC------------CCHHHHHHHHH
Q 009444 439 SDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTETQKTVK------------LTDRMWARLLA 498 (534)
Q Consensus 439 ~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPl~~v~~~~k~v~------------~~~~~w~~~l~ 498 (534)
+||+||++||..||+++++|+||+||+++++ ++..+||++++++.|+++ .++..|.+-|-
T Consensus 308 ~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v~~~~i~~~~~~v~~~~~~y~~pli 386 (416)
T PRK14072 308 TDVEEAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKMPPEFINEDGNGITEAFRRYLRPLI 386 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcCCHHHHhcCCCCcCHHHHHHHHHHh
Confidence 9999999999999999999999999999998 899999999988656654 33456666655
No 9
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=4.6e-84 Score=667.95 Aligned_cols=316 Identities=36% Similarity=0.546 Sum_probs=290.5
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccC-CHHHHhhHhhcCCcceeecCCCc----
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTL-SPKVVNDIHKRGGTILRTSRGGH---- 220 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L-~~~~V~~i~~~GGs~LGTsR~~~---- 220 (534)
|||||||||||||||++||++++++.+.++ .+||||++||+||+++++++| +|++++.|.++|||+|||||++.
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~g-~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcCC-ceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 699999999999999999999998864344 599999999999999999999 99999999999999999999842
Q ss_pred --hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHH
Q 009444 221 --DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (534)
Q Consensus 221 --d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 298 (534)
++++++++|++++||+||+||||||+++|++|++ .+ ++|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~----~g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD----KG--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh----cC--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999986 24 889999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCch
Q 009444 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQE 377 (534)
Q Consensus 299 i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~ 377 (534)
+++||.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++|+++ ++|++||||||+...
T Consensus 154 i~~ta~S~-~r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~~~ 228 (324)
T TIGR02483 154 LHTTAESH-HRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPK 228 (324)
T ss_pred HHHHHhhc-CCEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCcccc
Confidence 99999997 579999999999999999999999 899999999999977 899999999988 789999999999654
Q ss_pred hhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 009444 378 FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 457 (534)
Q Consensus 378 ~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~ 457 (534)
+..... ....+|++||+++++++.+|+++|+++++ +++|+..|||+|||+.|+++||.+|++||..||+++++
T Consensus 229 ~~~~~~-~~~~~d~~gh~~~~~~~~~l~~~i~~~~g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~ 301 (324)
T TIGR02483 229 GGEMVV-QEGVKDAFGHVRLGGIGNWLAEEIERRTG------IETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHE 301 (324)
T ss_pred ccchhc-cccccccccCcccCcHHHHHHHHHHHhcC------CcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 332221 22358999999999999999999999876 46778899999999999999999999999999999999
Q ss_pred CCCceEEEEeCCeeeeeeHHHHh
Q 009444 458 GFTGFTVGPVNSRHAYIPIARVT 480 (534)
Q Consensus 458 G~tg~mvgi~~~~~~~iPl~~v~ 480 (534)
|+||+||++++++++++||++++
T Consensus 302 g~~~~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 302 GQFGHMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred CCCCeEEEEECCEEEEeeHHHhC
Confidence 99999999999999999999863
No 10
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=9.2e-84 Score=669.70 Aligned_cols=325 Identities=30% Similarity=0.418 Sum_probs=300.8
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCc----
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~---- 220 (534)
+||||+||||||||||++||++++.+.. ++ ++||||++||+||+++++++|+|+.+++|+++|||+|||||++.
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-EG-LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999999875 44 79999999999999999999999999999999999999999753
Q ss_pred -hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 221 -d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
++++++++|++++||+||+||||||+++|++|++++++++.+++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCchh
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (534)
+.||.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++.++.+++.|++|+++ ++|++||||||+.+..
T Consensus 159 ~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~~ 236 (338)
T cd00363 159 RDTASSH-QRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFI 236 (338)
T ss_pred HHhcccC-CCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCcccc
Confidence 9999994 689999999999999999999999 899999999999777777999999999887 7899999999996421
Q ss_pred hcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 009444 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (534)
Q Consensus 379 ~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G 458 (534)
|+. ..+.+|+++|+++++ +++|+..|||+|||++|+++||.+|++||..|++++++|
T Consensus 237 --------------~~~---~~~~~l~~~i~~~~~------~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g 293 (338)
T cd00363 237 --------------PKP---ITEKLLAKLVEERLG------FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEG 293 (338)
T ss_pred --------------ccC---chHHHHHHHHHHHcC------CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 221 124689999998875 467788999999999999999999999999999999999
Q ss_pred CCceEEEEeCC---eeeeeeHHHHhhhcCC--CCCCHHHHHHH
Q 009444 459 FTGFTVGPVNS---RHAYIPIARVTETQKT--VKLTDRMWARL 496 (534)
Q Consensus 459 ~tg~mvgi~~~---~~~~iPl~~v~~~~k~--v~~~~~~w~~~ 496 (534)
+||+|++++++ ++.++||+++++.+|+ |++++.||..+
T Consensus 294 ~tg~mv~~~~~~~~~~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 294 TGGTPVGIQNLNENQVVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred CCCcEEEEECCccCEEEEecHHHHHhhhcccccCCChHHHHHh
Confidence 99999999999 9999999999999988 68999999764
No 11
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=2.3e-84 Score=725.96 Aligned_cols=397 Identities=20% Similarity=0.204 Sum_probs=349.9
Q ss_pred CCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc
Q 009444 69 DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR 135 (534)
Q Consensus 69 ~~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------~r 135 (534)
..+.++||.+|++.+|++|.+++.+.+|+++++|++++|+.|+.|+++|+ +++| +|+.+|.+++ +.
T Consensus 302 ~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~ 380 (762)
T cd00764 302 SLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMD-EKRFDEAAALRGKSFDKNWNLYKLLAIEL 380 (762)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhh-hhhHHHHHHhcchhHHHHHHHHHhccccC
Confidence 35779999999999999999999999999999999999999999999998 7888 6999999876 21
Q ss_pred c-ccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCccee
Q 009444 136 E-KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILR 214 (534)
Q Consensus 136 ~-~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LG 214 (534)
. +.. +.+++||||+||||||||||++||++|+++.. .+++||||++||+||+++++++|+|.+|++|+++|||+||
T Consensus 381 ~~~~~-~~~~~~IaIltsGG~apGmNaairavv~~a~~--~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LG 457 (762)
T cd00764 381 PQPLP-EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA--HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELG 457 (762)
T ss_pred CccCC-cccccEEEEEecCCCchhHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCccccc
Confidence 1 111 23458999999999999999999999998864 4689999999999999999999999999999999999999
Q ss_pred ecCCC--chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 215 TSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 215 TsR~~--~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
|+|+. +++++++++|++++||+||+||||||+++|++|++++.+|. +.|+|||||||||||||+||+|||||||+|+
T Consensus 458 T~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~ 537 (762)
T cd00764 458 TKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNA 537 (762)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHH
Confidence 99985 58999999999999999999999999999999999887763 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-----CCcE
Q 009444 292 AQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-----NGHM 366 (534)
Q Consensus 292 ~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-----~~~~ 366 (534)
++++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+...++++.+++++ +.+.
T Consensus 538 ~~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~ 616 (762)
T cd00764 538 LMKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLR 616 (762)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEe
Confidence 9999999999999988899999999999999999999999 899999999999999766667777766654 2357
Q ss_pred EEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHH
Q 009444 367 VIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTL 446 (534)
Q Consensus 367 vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~ 446 (534)
++++|||+... .++..+++++++ .+++|...|||+||||.|+++||++|++
T Consensus 617 ~~~~se~~~~~---------------------~~~~~~~~~~~~--------~~~~R~~vLGh~QrGG~Ps~~DR~latr 667 (762)
T cd00764 617 NEKCNENYTTV---------------------FTYELYSEEGKG--------VFDCRTNVLGHVQQGGAPSPFDRNFGTK 667 (762)
T ss_pred eeeeecCCccc---------------------cHHHHHHHHHhc--------CCceEecccccccCCCCCCHHHHHHHHH
Confidence 78999987421 123335555443 2678899999999999999999999999
Q ss_pred HHHHHHHHHHcC---------------CCceEEEEeCCeeeeeeHHHHhhhc-CCCCCCHHHHHHHHHh
Q 009444 447 LAHSAVHGAMAG---------------FTGFTVGPVNSRHAYIPIARVTETQ-KTVKLTDRMWARLLAS 499 (534)
Q Consensus 447 LG~~AV~~~~~G---------------~tg~mvgi~~~~~~~iPl~~v~~~~-k~v~~~~~~w~~~l~~ 499 (534)
||.+||++++++ .+.+++|++++++++.|+.++.+.. .+..|+..||..+...
T Consensus 668 ~g~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~~ 736 (762)
T cd00764 668 FAVKAMKWIEQKLKENYAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRPL 736 (762)
T ss_pred HHHHHHHHHHHhhhhhhcccccccCCCCceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHHH
Confidence 999999999984 3889999999999999999988743 3344889999888765
No 12
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=1.1e-82 Score=655.76 Aligned_cols=307 Identities=30% Similarity=0.438 Sum_probs=281.4
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-----
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~----- 219 (534)
+||||+||||||||||++||++++.+.+ + +.+||||++||+||+++++++|+|..++.|+++|||+|||||++
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 78 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDE 78 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCH
Confidence 4899999999999999999999998864 3 46999999999999999999999999999999999999999984
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
+++++++++|++++||+||+||||||+++|++|+++ + ++||||||||||||++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~----~--i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i 152 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH----G--FPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc----C--CCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999874 3 7899999999999999999999999999999999999
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCchh
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (534)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++++|||||||+..
T Consensus 153 ~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~-- 225 (317)
T cd00763 153 RDTSSSH-QRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD-- 225 (317)
T ss_pred HHHHhcC-CCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC--
Confidence 9999986 589999999999999999999999 899999999999977 899999999987 78999999999842
Q ss_pred hcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 009444 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (534)
Q Consensus 379 ~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G 458 (534)
...|++.|+++++ +++|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 226 ----------------------~~~l~~~l~~~~g------~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g 277 (317)
T cd00763 226 ----------------------VDELAKEIEEATG------FETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAG 277 (317)
T ss_pred ----------------------HHHHHHHHHHHhC------CCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 1236777777765 456778899999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHhhhcCCCCCCHHHHHHHH
Q 009444 459 FTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLL 497 (534)
Q Consensus 459 ~tg~mvgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l 497 (534)
++|+||+++++++.++||+++.+.+|.+++ .|.++.
T Consensus 278 ~~~~mv~~~~~~~~~~pl~~~~~~~k~~~~---~~~~~~ 313 (317)
T cd00763 278 KGGLAVGIQNEQLVHHDIIDAIENMKPFKK---DWLALA 313 (317)
T ss_pred CCCeEEEEECCEEEEecHHHHhhCCCCCCH---HHHHHH
Confidence 999999999999999999999987777765 566553
No 13
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=1.4e-82 Score=650.69 Aligned_cols=294 Identities=31% Similarity=0.481 Sum_probs=271.5
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-----c
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-----H 220 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-----~ 220 (534)
||||+||||||||||++||++++.+.+ + +.+|||+++||+||+++++++|+|.++++|+++|||+|||||++ +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-H-GFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 699999999999999999999998864 4 46999999999999999999999999999999999999999974 2
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~ 300 (534)
++++++++|++++||+||+||||||+++|++|+++ ++++|||||||||||+++||+|||||||+++++++|++++
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999986 3588999999999999999999999999999999999999
Q ss_pred HhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCchhh
Q 009444 301 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFV 379 (534)
Q Consensus 301 ~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~~ 379 (534)
++|.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ +++++|++|+++ ++|++||||||+..
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~--- 225 (301)
T TIGR02482 154 DTATSH-ERAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIV--- 225 (301)
T ss_pred HHhhcC-CCEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcC---
Confidence 999997 579999999999999999999999 899999999999987 899999999987 78999999999521
Q ss_pred cccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCC
Q 009444 380 AQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGF 459 (534)
Q Consensus 380 ~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~ 459 (534)
| .+..|+++|+++++ +++|+..|||+|||++|+++||.+|++||..||+++++|+
T Consensus 226 -------------~------~~~~l~~~l~~~~g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~ 280 (301)
T TIGR02482 226 -------------G------SAKEVAKKIEEATG------IETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGK 280 (301)
T ss_pred -------------C------cHHHHHHHHHHhcC------CeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 02357788877654 4677889999999999999999999999999999999999
Q ss_pred CceEEEEeCCeeeeeeHHHH
Q 009444 460 TGFTVGPVNSRHAYIPIARV 479 (534)
Q Consensus 460 tg~mvgi~~~~~~~iPl~~v 479 (534)
+|+||++++++++++||+++
T Consensus 281 ~~~mv~~~~~~~~~~p~~~~ 300 (301)
T TIGR02482 281 GGVMIGIQNNKIVTHPIEEA 300 (301)
T ss_pred CCEEEEEECCEEEEeeHHHh
Confidence 99999999999999999986
No 14
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.4e-81 Score=646.57 Aligned_cols=308 Identities=32% Similarity=0.451 Sum_probs=282.2
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-----
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~----- 219 (534)
+||||+||||||||||++||++++.+.. . +++||||++||+||+++++++|+|+++++|.++|||+|||+|+.
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~-~-g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS-E-GLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH-C-CCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 4899999999999999999999998865 3 56999999999999999999999999999999999999999974
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
+++++++++|++++||+||+||||||+++|++|+|+ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 258999999999999999999999999999999863 58899999999999999999999999999999999999
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCchh
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (534)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ ++|++||||||+.+.
T Consensus 154 ~~~a~s~-~rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~~- 227 (320)
T PRK03202 154 RDTASSH-ERVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMPA- 227 (320)
T ss_pred HHHHhcc-CCEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCCH-
Confidence 9999997 589999999999999999999999 899999999999987 899999999988 789999999999531
Q ss_pred hcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 009444 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (534)
Q Consensus 379 ~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G 458 (534)
..|++.|+++++ +++|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 228 -----------------------~~l~~~i~~~~~------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (320)
T PRK03202 228 -----------------------EELAKEIEERTG------LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEG 278 (320)
T ss_pred -----------------------HHHHHHHHHHhC------CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 237888888775 467899999999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHh-hhcCCCCCCHHHHHHHHH
Q 009444 459 FTGFTVGPVNSRHAYIPIARVT-ETQKTVKLTDRMWARLLA 498 (534)
Q Consensus 459 ~tg~mvgi~~~~~~~iPl~~v~-~~~k~v~~~~~~w~~~l~ 498 (534)
++|+||+++++++.++||++++ +++|.+++ .|.++..
T Consensus 279 ~~~~~v~~~~~~~~~vpl~~v~~~~~~~~~~---~~~~~~~ 316 (320)
T PRK03202 279 KGGRMVGIQNNKIVHVPIEEAVENMKHPFDK---DLYELAK 316 (320)
T ss_pred CCCeEEEEECCEEEEEeHHHHHhcCCCCCCH---HHHHHHH
Confidence 9999999999999999999999 65555554 5555533
No 15
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=1.3e-79 Score=668.48 Aligned_cols=394 Identities=24% Similarity=0.362 Sum_probs=321.7
Q ss_pred hhcCCCCCCCCCCCCCCc-ccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccC
Q 009444 80 TNFLPDLPSYPNPLKKSQ-AYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (534)
Q Consensus 80 ~~~~P~~p~~~~~l~~n~-~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~ag~r~~~~f~~~~~riaIvtsG 153 (534)
+.|.|.+|.+ |++-. .++ ......+..+...-.+.+.|| +...|.......+ .+..+||||++||
T Consensus 6 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~---~~~~~rIgIl~sG 76 (539)
T TIGR02477 6 LQYVPKLPKV---LQGDTANIS---LEDGEPTAAVADQEELKELFPNTYGLPIITFEPGEASPD---EHQPLKIGVILSG 76 (539)
T ss_pred hhCCCCCChH---HcCCCcceE---EeccCcccCCCCHHHHHHhChHhhCCccEEEecCCCCcc---cccceEEEEECCC
Confidence 5789999988 53310 122 122233333333323345553 5566765322111 2456899999999
Q ss_pred CCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ceeecCCC----chHHHHHHH
Q 009444 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDN 228 (534)
Q Consensus 154 G~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~----~d~~~iv~~ 228 (534)
|||||||++|+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||+ +|||+|++ +++++++++
T Consensus 77 G~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~ 156 (539)
T TIGR02477 77 GQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTT 156 (539)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999887777899999999999999999999999999999999996 99999985 368999999
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcc--ccCCCCChhhHHHHHHHHHHHHHHhhhhc
Q 009444 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (534)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~--gtD~S~GFdTAv~~~~~ai~~i~~~A~S~ 306 (534)
|++++||+||+||||||+++|++|++++.+++++|+|||||||||||++ +||+|||||||+++++++|+++..+|.|+
T Consensus 157 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~ 236 (539)
T TIGR02477 157 AKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSA 236 (539)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998 59999999999999999999999899888
Q ss_pred CCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCC----CCCC-hhhHHHHHHHHHHh-CCcEEEEEeCCCCc----
Q 009444 307 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF----YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQ---- 376 (534)
Q Consensus 307 ~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf----~le~-~~~l~e~I~~rl~~-~~~~vIVvaEGa~~---- 376 (534)
++||||||+|||+|||||++||||+ +||+|||||+++ ++++ .+.+++.|.+|+.+ ++|+||||+||+..
T Consensus 237 ~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe 315 (539)
T TIGR02477 237 KKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEFIPE 315 (539)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhhcch
Confidence 8899999999999999999999999 899999999997 4332 34566667777765 68999999999843
Q ss_pred ----------------------hhhcccCCc-----------------cccccccCCcchhhh--HHHHHHHHHhhcccc
Q 009444 377 ----------------------EFVAQSMPA-----------------VDEKDASGNRLLLDI--GLWLTQKIKDHFTKV 415 (534)
Q Consensus 377 ----------------------~~~~~~l~~-----------------~~~~Da~Gn~~l~~i--g~~L~~~I~e~~~~~ 415 (534)
.++.+.++. +..+|++||++++++ +++|++.+++++++.
T Consensus 316 ~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l~~~ 395 (539)
T TIGR02477 316 VQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKR 395 (539)
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHHHhh
Confidence 111111111 125899999999988 788888888877532
Q ss_pred ce-eEEeeeee----CCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC--e-----eeeeeHHHHhhhc
Q 009444 416 QK-MMINMKYI----DPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS--R-----HAYIPIARVTETQ 483 (534)
Q Consensus 416 ~~-~~~~~k~i----~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~--~-----~~~iPl~~v~~~~ 483 (534)
.. ..++.+|. .+||+|||+.|+.+|+.||+.||+.|++++++|+||+|++++|- . +..+|+..+++..
T Consensus 396 ~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e 475 (539)
T TIGR02477 396 KKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNME 475 (539)
T ss_pred hccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhChh
Confidence 21 13566777 56999999999999999999999999999999999999999982 1 3679999988744
No 16
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-79 Score=631.02 Aligned_cols=311 Identities=34% Similarity=0.472 Sum_probs=273.3
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC----
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG---- 219 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~---- 219 (534)
.+||||+||||||||||+|||++|+++.. + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|.+
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~-g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-E-GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-c-CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 46999999999999999999999999975 3 68999999999999999999999999999999999999999985
Q ss_pred -chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHH
Q 009444 220 -HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (534)
Q Consensus 220 -~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 298 (534)
+..++++++|++++||+|++||||||+++|+.|+|+. +++|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 2478999999999999999999999999999999874 3789999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHH--hCCcEEEEEeCCCCc
Q 009444 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK--ENGHMVIVVAEGAGQ 376 (534)
Q Consensus 299 i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~--~~~~~vIVvaEGa~~ 376 (534)
++.+|+|| +|+||||||||+|||||++||||+ +||+|+|||.+|++ ..++++..++++.+ .+.|++||++||+..
T Consensus 155 l~dtassh-~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~~ 231 (347)
T COG0205 155 LRDTASSH-ERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGAID 231 (347)
T ss_pred HHHHHhCc-CCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 99777775 689999999999999999999999 89999999999987 22367777776443 358999999999975
Q ss_pred hhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHH
Q 009444 377 EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAM 456 (534)
Q Consensus 377 ~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~ 456 (534)
... .+|+..+..+.+++... .+++|...|||+|||++|+++||+||++||..||++++
T Consensus 232 ~~~-----------~~~~~~~~~i~~~~~~~-----------~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~ 289 (347)
T COG0205 232 QIG-----------ENGAELLAAIEELLALG-----------DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLL 289 (347)
T ss_pred ccc-----------cchhhHHHHHHHHhhhc-----------ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 321 14554444433333222 14678889999999999999999999999999999999
Q ss_pred cCCCceEEEEeCCeeeeeeHHHHhhhcCCC
Q 009444 457 AGFTGFTVGPVNSRHAYIPIARVTETQKTV 486 (534)
Q Consensus 457 ~G~tg~mvgi~~~~~~~iPl~~v~~~~k~v 486 (534)
+|++|+||+++|+++++.|+.+.....+.+
T Consensus 290 ~g~~~~~v~i~~~~~v~~~~~~~~~~~~~~ 319 (347)
T COG0205 290 EGKTGYMVGIRNNKIVHVPIDEAVAPLKMV 319 (347)
T ss_pred cCCCCceEEEeCCeeEeehhHhhhhhhhhh
Confidence 999999999999999999999887765543
No 17
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.7e-78 Score=660.88 Aligned_cols=393 Identities=23% Similarity=0.354 Sum_probs=319.2
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccCC
Q 009444 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCGG 154 (534)
Q Consensus 80 ~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~ag~r~~~~f~~~~~riaIvtsGG 154 (534)
+.|.|.+|.. |++. ...........|+.+...-++.+.|| +...|....+. . ...+||||++|||
T Consensus 11 ~~~~p~lp~~---l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~--~---~~~~~IgIl~sGG 80 (555)
T PRK07085 11 LKYRPKLPKL---LQND--PGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVKGSES--S---SKPLKVGVILSGG 80 (555)
T ss_pred HhCCCCCCHH---HhCC--CCCceEeecCCccccCCHHHHHHhChHhhCCccEEEEeCCCC--c---ccceEEEEECCCC
Confidence 5789999987 4321 11112223344444444333345553 56677764321 1 2358999999999
Q ss_pred CCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ceeecCCC----chHHHHHHHH
Q 009444 155 LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDNI 229 (534)
Q Consensus 155 ~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~----~d~~~iv~~l 229 (534)
||||||+||+++++++...+.+.+||||++||+||+++++++|+|+.|+.|+++||+ +|||+|++ +++++++++|
T Consensus 81 ~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~~l 160 (555)
T PRK07085 81 QAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLETV 160 (555)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHHHH
Confidence 999999999999997776677899999999999999999999999999999999998 99999985 3689999999
Q ss_pred HHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccc--cCCCCChhhHHHHHHHHHHHHHHhhhhcC
Q 009444 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVESVE 307 (534)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~g--tD~S~GFdTAv~~~~~ai~~i~~~A~S~~ 307 (534)
++++||+||+||||||+++|++|++++++++.+|+|||||||||||+++ +|+|||||||+++++++|+++..+|.|++
T Consensus 161 ~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s~~ 240 (555)
T PRK07085 161 KKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAK 240 (555)
T ss_pred HHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999995 59999999999999999999999999988
Q ss_pred CceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCC----CCCC-hhhHHHHHHHHHHh-CCcEEEEEeCCCCch----
Q 009444 308 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF----YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQE---- 377 (534)
Q Consensus 308 ~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf----~le~-~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~---- 377 (534)
+||||||+|||+|||||++||||+ +||+|||||+++ ++++ .+.+++.|.+|..+ ++|+||||+||+...
T Consensus 241 ~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe~ 319 (555)
T PRK07085 241 KYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIPEM 319 (555)
T ss_pred CcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCchH
Confidence 899999999999999999999999 899999999954 4432 12333444556544 689999999998631
Q ss_pred --hh--------------------------cccCCc-----------------cccccccCCcchhhh--HHHHHHHHHh
Q 009444 378 --FV--------------------------AQSMPA-----------------VDEKDASGNRLLLDI--GLWLTQKIKD 410 (534)
Q Consensus 378 --~~--------------------------~~~l~~-----------------~~~~Da~Gn~~l~~i--g~~L~~~I~e 410 (534)
++ .+.++. ...+|++||++++++ +++|++.|++
T Consensus 320 ~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV~~ 399 (555)
T PRK07085 320 KSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVKK 399 (555)
T ss_pred HHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHHHH
Confidence 00 001111 125899999999988 8899999988
Q ss_pred hccccce-----eEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC--e-----eeeeeHHH
Q 009444 411 HFTKVQK-----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS--R-----HAYIPIAR 478 (534)
Q Consensus 411 ~~~~~~~-----~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~--~-----~~~iPl~~ 478 (534)
+++..+. ..+..+...+||+|||+.|+.+|+.||+.||+.|++++++|+||+|++++|- . ...+||..
T Consensus 400 ~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~ 479 (555)
T PRK07085 400 ELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPLTM 479 (555)
T ss_pred HHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHH
Confidence 8764211 1355566679999999999999999999999999999999999999999982 2 36899999
Q ss_pred Hhhhc
Q 009444 479 VTETQ 483 (534)
Q Consensus 479 v~~~~ 483 (534)
+++..
T Consensus 480 ~~n~e 484 (555)
T PRK07085 480 MMNME 484 (555)
T ss_pred HhcHH
Confidence 88743
No 18
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=3.4e-78 Score=676.26 Aligned_cols=346 Identities=21% Similarity=0.302 Sum_probs=304.1
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CcccCCHHHHhhHhhcCCcceeecCCCc
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~~ 220 (534)
+++||||+||||||||||++||++|+.+.+ .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~--~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY--VGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH--CCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 457999999999999999999999998864 457999999999999998 7899999999999999999999999853
Q ss_pred -----hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH-----------------HHHHHcCCceeEeeeccccccCccc
Q 009444 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY-----------------KEVEKRGLQVAVAGIPKTIDNDIAV 278 (534)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~-----------------e~~~~~g~~i~vvgIPkTIDNDI~g 278 (534)
++.+++++|++++||+||+||||||+++|++|. ++..+++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 578999999999999999999999999999764 3334455678999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHH
Q 009444 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 358 (534)
Q Consensus 279 tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~ 358 (534)
||+|||||||++.++++||++++||.||+ |+||||||||+|||||+++|||+ +||+|||||.||+.++++.+++.+++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh~-R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~~ 237 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLSE 237 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhcC-CEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999985 79999999999999999999999 89999999999994444566666666
Q ss_pred HHHh-CCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCC
Q 009444 359 QLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSN 437 (534)
Q Consensus 359 rl~~-~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~ 437 (534)
+.+. ++++|||||||+. |..|+... +.+|++.|+++++ +++|...|||+|||+.|+
T Consensus 238 ~~~~gk~~~iIVVaEGa~--------------d~~g~~i~---~~~l~~~l~~~~g------~d~R~t~LGh~QRGG~Ps 294 (762)
T cd00764 238 HRSRGKRLNIIIVAEGAI--------------DDQLKPIT---SEDVKDLVVERLG------LDTRVTTLGHVQRGGTPS 294 (762)
T ss_pred HHhcCCCcEEEEEeCCCc--------------cccCCCcc---HHHHHHHHHHhcC------CCeeEeecChhhcCCCCC
Confidence 5544 4799999999994 23344332 2468888888765 457778999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHhhhcCCCC--CCHHHHHHHHHhcCCCCCCChhhHh
Q 009444 438 GSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEVL 512 (534)
Q Consensus 438 a~Dr~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~t~qp~f~~~~~~~ 512 (534)
++||++|++||..||+++++|.+ ++||++++++++++||.+++..+|.|. .+...|.+.+... .++|..+-+.+
T Consensus 295 a~Dr~la~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~lr-~~~f~~~~~~~ 373 (762)
T cd00764 295 AFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAALR-GKSFDKNWNLY 373 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHhc-chhHHHHHHHH
Confidence 99999999999999999999986 899999999999999999999999885 6778899998885 56999888877
Q ss_pred hhhh
Q 009444 513 HHQE 516 (534)
Q Consensus 513 ~~~~ 516 (534)
....
T Consensus 374 ~~~~ 377 (762)
T cd00764 374 KLLA 377 (762)
T ss_pred Hhcc
Confidence 6654
No 19
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=4.6e-78 Score=677.46 Aligned_cols=345 Identities=24% Similarity=0.332 Sum_probs=306.9
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CcccCCHHHHhhHhhcCCcceeecCCCc--
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-- 220 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~~-- 220 (534)
+||||+||||||||||++||++|+.+.+ .+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~--~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY--VGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 4899999999999999999999998864 357999999999999999 9999999999999999999999999853
Q ss_pred ---hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH-----------------HHHHcCCceeEeeeccccccCccccC
Q 009444 221 ---DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-----------------EVEKRGLQVAVAGIPKTIDNDIAVID 280 (534)
Q Consensus 221 ---d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e-----------------~~~~~g~~i~vvgIPkTIDNDI~gtD 280 (534)
+.++++++|++++||+||+||||||+++|+.|++ +..+++..++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 4689999999999999999999999999997765 33445667899999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHH
Q 009444 281 KSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQL 360 (534)
Q Consensus 281 ~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl 360 (534)
+|||||||+++++++||+++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+.++++++++.++++.
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh-~R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~ 236 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSH-QRAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNR 236 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcc-CCEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999997 579999999999999999999999 8999999999999776667888877654
Q ss_pred Hh-CCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChh
Q 009444 361 KE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGS 439 (534)
Q Consensus 361 ~~-~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~ 439 (534)
+. ++++|||||||+. |+.||+.. ..+|++.|+++++ ++.|...|||+|||++|+++
T Consensus 237 ~~gk~~~iIvvaEG~~--------------d~~g~~i~---~~~l~~~l~~~~g------~~~R~~~LGh~QRgg~Psa~ 293 (745)
T TIGR02478 237 KAGKRKNIVIVAEGAI--------------DRDLNPIT---SEDVKDVLVERLG------LDTRITVLGHVQRGGAPSAY 293 (745)
T ss_pred HcCCCcEEEEEeCCcc--------------cccCCccc---HHHHHHHHHHhcC------CceEEeecChhhcCCCCCHH
Confidence 44 5899999999984 34566543 3468888887765 45677889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHhhhcCCCCC--CHHHHHHHHHhcCCCCCCChhhHhhh
Q 009444 440 DNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVKL--TDRMWARLLASTNQPSFLNCSEVLHH 514 (534)
Q Consensus 440 Dr~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPl~~v~~~~k~v~~--~~~~w~~~l~~t~qp~f~~~~~~~~~ 514 (534)
||.+|++||..||+++++|.+ ++||+++++++.++||+++++++|.|+. ....|...++.. .++|..+-+.+..
T Consensus 294 Dr~la~~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~~r-~~~f~~~~~~~~~ 372 (745)
T TIGR02478 294 DRILATRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMRLR-GREFVENLATFLF 372 (745)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHHhc-CHHHHHHHHHHHh
Confidence 999999999999999999998 9999999999999999999999999984 456889998885 5799998887776
Q ss_pred hhh
Q 009444 515 QEK 517 (534)
Q Consensus 515 ~~~ 517 (534)
-..
T Consensus 373 ~~~ 375 (745)
T TIGR02478 373 LSI 375 (745)
T ss_pred hhc
Confidence 643
No 20
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=2.2e-77 Score=650.28 Aligned_cols=397 Identities=24% Similarity=0.322 Sum_probs=324.6
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccCC
Q 009444 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCGG 154 (534)
Q Consensus 80 ~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~ag~r~~~~f~~~~~riaIvtsGG 154 (534)
..|.|.+|++ |++- +........+.|..+...-++.+.|+ +..+|........ .+..+||||++|||
T Consensus 11 ~~~~p~lp~~---l~~~--~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~IgIl~SGG 82 (550)
T cd00765 11 INYTPKLPSV---LKGD--FNNIKIVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQDAPS---SAPKLKIGIVLSGG 82 (550)
T ss_pred HhcCCCCChh---hcCC--ccceEEeecCcccccCCHHHHHHhChhhhCCcceEEeecCCccc---CCCCCEEEEECCCC
Confidence 4689999998 5431 11112334444555444333345553 6677877432111 14568999999999
Q ss_pred CCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ceeecCCC----chHHHHHHHH
Q 009444 155 LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDNI 229 (534)
Q Consensus 155 ~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~----~d~~~iv~~l 229 (534)
||||||++|+++++.+...+++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++|
T Consensus 83 ~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~l 162 (550)
T cd00765 83 QAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETA 162 (550)
T ss_pred CcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHHH
Confidence 999999999999998876667889999999999999999999999999999999999 99999985 4689999999
Q ss_pred HHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc--CCCCChhhHHHHHHHHHHHHHHhhhhcC
Q 009444 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHVEVESVE 307 (534)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~ai~~i~~~A~S~~ 307 (534)
++++||+||+||||||+++|++|++++++.+++|+|||||||||||++++ |+|||||||+++++++|++++.||.|++
T Consensus 163 ~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~~ 242 (550)
T cd00765 163 KKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTG 242 (550)
T ss_pred HHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999985 9999999999999999999999999999
Q ss_pred CceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-----hhhHHHHHHHHHHh-CCcEEEEEeCCCCchh---
Q 009444 308 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-----PGGLFEFIERQLKE-NGHMVIVVAEGAGQEF--- 378 (534)
Q Consensus 308 ~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~-----~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~--- 378 (534)
+||+|||+|||+|||||++||||+ +||+|||||++++.+. .+.+++.|++|..+ ++|+||||+||+....
T Consensus 243 ~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ipe~ 321 (550)
T cd00765 243 KYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIPEV 321 (550)
T ss_pred CcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCchH
Confidence 999999999999999999999999 8999999999994331 22344555566544 5899999999986510
Q ss_pred ---hc------------------------------------------ccCC--ccccccccCCcchhhh--HHHHHHHHH
Q 009444 379 ---VA------------------------------------------QSMP--AVDEKDASGNRLLLDI--GLWLTQKIK 409 (534)
Q Consensus 379 ---~~------------------------------------------~~l~--~~~~~Da~Gn~~l~~i--g~~L~~~I~ 409 (534)
+. +++. ....+|++||++++++ ++.|++.++
T Consensus 322 ~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV~ 401 (550)
T cd00765 322 KELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMVE 401 (550)
T ss_pred HHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHHH
Confidence 00 0010 1235899999999988 999999999
Q ss_pred hhcccc-ce----eEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHH
Q 009444 410 DHFTKV-QK----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIA 477 (534)
Q Consensus 410 e~~~~~-~~----~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPl~ 477 (534)
++++.. .+ ..+......+||+|||+.|+.+|+.||+.||+.|++++.+|.||+|++++|- ++..+||.
T Consensus 402 ~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vPl~ 481 (550)
T cd00765 402 TRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPLT 481 (550)
T ss_pred HHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecccHH
Confidence 887642 11 1244456678999999999999999999999999999999999999999972 24679999
Q ss_pred HHhhhcCC
Q 009444 478 RVTETQKT 485 (534)
Q Consensus 478 ~v~~~~k~ 485 (534)
.+++..+.
T Consensus 482 ~~mn~e~~ 489 (550)
T cd00765 482 MLMNMERR 489 (550)
T ss_pred HHhccccc
Confidence 99886544
No 21
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.2e-76 Score=650.05 Aligned_cols=395 Identities=21% Similarity=0.321 Sum_probs=326.0
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHH--HHhccCC-----CCcccccc---cCCccccccCCCCeeEEE
Q 009444 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQN--IVIQKDS-----PRGVHFRR---AGPREKVYFKSDEVRACI 149 (534)
Q Consensus 80 ~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~--~~~~~~~-----~r~~~F~~---ag~r~~~~f~~~~~riaI 149 (534)
+.|.|.+|.. |++- .++ ....+.|..+... -.+.+.| .+...|.. ++|+.+.++++..+||||
T Consensus 12 ~~~~p~lp~~---l~~~-~~~---~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rIgI 84 (610)
T PLN03028 12 SLYQPELPPC---LQGT-TVR---VELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVRVGV 84 (610)
T ss_pred HhCCCCCChh---hCCC-cEE---EeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCcccEEEE
Confidence 5799999988 5331 112 2223333333322 2223445 35677776 458888888888899999
Q ss_pred EccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ceeecCCC----chHHH
Q 009444 150 VTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNK 224 (534)
Q Consensus 150 vtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~----~d~~~ 224 (534)
|+|||||||||+||+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||+ +|||+|.+ +++++
T Consensus 85 v~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~ 164 (610)
T PLN03028 85 VFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNA 164 (610)
T ss_pred EccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHH
Confidence 99999999999999999999887667789999999999999999999999999999999998 89999964 36899
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcc--ccCCCCChhhHHHHHHHHHHHHHHh
Q 009444 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVE 302 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~--gtD~S~GFdTAv~~~~~ai~~i~~~ 302 (534)
++++|++++||+||+||||||+++|++|++++++.+.+|+|||||||||||++ +||+|||||||+++++++|++++.|
T Consensus 165 i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni~~d 244 (610)
T PLN03028 165 ALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 244 (610)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred hhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCC-CCC---CC-hhhHHHHHHHHHHh-CCcEEEEEeCCCCc
Q 009444 303 VESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP-FYL---EG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQ 376 (534)
Q Consensus 303 A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~p-f~l---e~-~~~l~e~I~~rl~~-~~~~vIVvaEGa~~ 376 (534)
|.|+++||||||+|||+|||||++||||+ +||+|||||+. ++. .. .+.+++.|++|+++ ++|+||||+||+..
T Consensus 245 A~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGlie 323 (610)
T PLN03028 245 ALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGLIE 323 (610)
T ss_pred HHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCccc
Confidence 99998899999999999999999999999 89999999974 322 22 25788888888854 68999999999863
Q ss_pred hh------hc----------------ccCC-----------------ccccccccCCcchhh--hHHHHHHHHHhhcccc
Q 009444 377 EF------VA----------------QSMP-----------------AVDEKDASGNRLLLD--IGLWLTQKIKDHFTKV 415 (534)
Q Consensus 377 ~~------~~----------------~~l~-----------------~~~~~Da~Gn~~l~~--ig~~L~~~I~e~~~~~ 415 (534)
.. +. +.++ ....+|++||+++++ .+++|++.++++++.+
T Consensus 324 ~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL~~r 403 (610)
T PLN03028 324 SIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKR 403 (610)
T ss_pred cCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHHHHH
Confidence 31 00 0000 123589999999987 6678888888777643
Q ss_pred cee------EEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHHHHhhh
Q 009444 416 QKM------MINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTET 482 (534)
Q Consensus 416 ~~~------~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPl~~v~~~ 482 (534)
.+. .|+...-.+||+|||+.|+.+|+.||+.||+.|+.++.+|.||+|++++|- ++..+||..+++.
T Consensus 404 ~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~m~~ 483 (610)
T PLN03028 404 TKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMMSV 483 (610)
T ss_pred hhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHHhhH
Confidence 321 233333468999999999999999999999999999999999999999972 2457999998763
No 22
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=1.2e-75 Score=638.05 Aligned_cols=392 Identities=21% Similarity=0.262 Sum_probs=319.4
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC-CccccccCCCCeeEEEEccC
Q 009444 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG-PREKVYFKSDEVRACIVTCG 153 (534)
Q Consensus 80 ~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag-~r~~~~f~~~~~riaIvtsG 153 (534)
+.|.|.+|.+ |++ .+. ....+.+..+...-.+.+.| .+...|.+.. +..+ .+..+|||||+||
T Consensus 37 ~~~~p~lp~~---l~~--~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~---~~~~~~IGIv~sG 105 (568)
T PLN02251 37 IDHALPLPSV---LKG--PFK---IVDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQADALS---SDQKLKIGVVLSG 105 (568)
T ss_pred HhCCCCCChh---hcC--ceE---EEecCcccccCCHHHHHHhChHhhCCceEEEeeccCcccc---ccccceEEEECcC
Confidence 5799999988 544 122 22333344443332334455 3566777632 1111 1345799999999
Q ss_pred CCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ceeecCCC----chHHHHHHH
Q 009444 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDN 228 (534)
Q Consensus 154 G~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~----~d~~~iv~~ 228 (534)
|||||||+||+++++++....++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++
T Consensus 106 G~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~ 185 (568)
T PLN02251 106 GQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEET 185 (568)
T ss_pred CCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHH
Confidence 9999999999999999876667789999999999999999999999999999999998 99999985 468999999
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC--CCCChhhHHHHHHHHHHHHHHhhhhc
Q 009444 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHVEVESV 306 (534)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD--~S~GFdTAv~~~~~ai~~i~~~A~S~ 306 (534)
|++++||+||+||||||+++|+.|++++++.+.+|+|||||||||||++++| +|||||||+++++++|++++.||.|+
T Consensus 186 l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S~ 265 (568)
T PLN02251 186 ATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARST 265 (568)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred CCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-h----hhHHHHHHHHHHh-CCcEEEEEeCCCCch---
Q 009444 307 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-P----GGLFEFIERQLKE-NGHMVIVVAEGAGQE--- 377 (534)
Q Consensus 307 ~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~-~----~~l~e~I~~rl~~-~~~~vIVvaEGa~~~--- 377 (534)
+++|+|||+|||+|||||++||||+ +||+|||||++++.+. + +.+++.|++|... ++|+||||+||+...
T Consensus 266 ~k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie~ipe 344 (568)
T PLN02251 266 GKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIPE 344 (568)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCch
Confidence 8889999999999999999999999 8999999999665432 2 2344556666654 689999999999310
Q ss_pred ---hhcc------------------cCC-----------------ccccccccCCcchhh--hHHHHHHHHHhhccccce
Q 009444 378 ---FVAQ------------------SMP-----------------AVDEKDASGNRLLLD--IGLWLTQKIKDHFTKVQK 417 (534)
Q Consensus 378 ---~~~~------------------~l~-----------------~~~~~Da~Gn~~l~~--ig~~L~~~I~e~~~~~~~ 417 (534)
++.+ .++ ...++|++||+++++ .++.|++.++++++..+.
T Consensus 345 ~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~~rk~ 424 (568)
T PLN02251 345 VQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQ 424 (568)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHhhhcc
Confidence 1100 111 123589999999987 678899988888764211
Q ss_pred -----eEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCe-------eeeeeHHHHhhhc
Q 009444 418 -----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSR-------HAYIPIARVTETQ 483 (534)
Q Consensus 418 -----~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~~-------~~~iPl~~v~~~~ 483 (534)
..|..+...+||+|||+.|+.+|+.||+.||+.|+.++.+|+||+|++++|.. ...+||..+++..
T Consensus 425 ~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~mn~e 502 (568)
T PLN02251 425 EGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMDVE 502 (568)
T ss_pred ccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHhhhh
Confidence 13445667899999999999999999999999999999999999999999832 4569999988743
No 23
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=3.8e-73 Score=650.31 Aligned_cols=392 Identities=23% Similarity=0.305 Sum_probs=316.5
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHH--HHhccCC-----CCcccccccCC--ccccccCCCCeeEEEE
Q 009444 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQN--IVIQKDS-----PRGVHFRRAGP--REKVYFKSDEVRACIV 150 (534)
Q Consensus 80 ~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~--~~~~~~~-----~r~~~F~~ag~--r~~~~f~~~~~riaIv 150 (534)
..|.|.+|++ |++ .+. ....+.|..+... -++.+.| .+...|..+.. ..... ...+|||||
T Consensus 39 ~~~~p~lp~~---l~~--~~~---~~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~~~~~~~~--~~~krIGIL 108 (1328)
T PTZ00468 39 RRWEPCLPHI---LRS--PLS---IKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWKK--FPARRIGVV 108 (1328)
T ss_pred HhcCCCCChH---hcC--ceE---EeecCCcccccCcchHHHHHhCccccCCcceEEeecCCCcccccc--ccCCEEEEE
Confidence 4699999998 544 122 2223344443332 2233445 36677776321 11111 134799999
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ceeecCCC----chHHHH
Q 009444 151 TCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKI 225 (534)
Q Consensus 151 tsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~----~d~~~i 225 (534)
||||||||||+||+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||| +|||+|++ ++++++
T Consensus 109 tSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~ 188 (1328)
T PTZ00468 109 LSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRAS 188 (1328)
T ss_pred CcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHH
Confidence 9999999999999999998865566789999999999999999999999999999999997 99999985 368999
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccc--cCCCCChhhHHHHHHHHHHHHHHhh
Q 009444 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEV 303 (534)
Q Consensus 226 v~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~g--tD~S~GFdTAv~~~~~ai~~i~~~A 303 (534)
+++|++++||+||+||||||+++|++|+++++++|.+++|||||||||||+++ ||+|||||||+++++++|++++.+|
T Consensus 189 le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A 268 (1328)
T PTZ00468 189 LEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAI 268 (1328)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred hhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-----hhhHHHHHHHHHHh-CCcEEEEEeCCCCc-
Q 009444 304 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-----PGGLFEFIERQLKE-NGHMVIVVAEGAGQ- 376 (534)
Q Consensus 304 ~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~-----~~~l~e~I~~rl~~-~~~~vIVvaEGa~~- 376 (534)
.|+++||||||+|||+|||||++||||+ +||+|||||++++.+. .+.+++.|.+|+.. ++|+||||+||+..
T Consensus 269 ~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGlief 347 (1328)
T PTZ00468 269 KTEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEF 347 (1328)
T ss_pred hhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCcccc
Confidence 9988899999999999999999999999 8999999999987432 22344555556544 57999999999862
Q ss_pred ---------------------hhhcccCC-----------------ccccccccCCcchhhhH--HHHHHHHHhhccccc
Q 009444 377 ---------------------EFVAQSMP-----------------AVDEKDASGNRLLLDIG--LWLTQKIKDHFTKVQ 416 (534)
Q Consensus 377 ---------------------~~~~~~l~-----------------~~~~~Da~Gn~~l~~ig--~~L~~~I~e~~~~~~ 416 (534)
.++.+.++ ...++|++||+++++++ ++|++.+++++.+..
T Consensus 348 Ipe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~~~ 427 (1328)
T PTZ00468 348 IPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVK 427 (1328)
T ss_pred ccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHHHHhh
Confidence 01111110 11358999999999877 888888888774221
Q ss_pred ee--EEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCe-------eeeeeHHHHhhh
Q 009444 417 KM--MINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSR-------HAYIPIARVTET 482 (534)
Q Consensus 417 ~~--~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~~-------~~~iPl~~v~~~ 482 (534)
.. .+.+++-.+||+|||+.|+.+|+.||+.||..|++++.+|+||+|++++|.+ +..+||..+++.
T Consensus 428 ~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn~ 502 (1328)
T PTZ00468 428 KDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNI 502 (1328)
T ss_pred cccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHhhH
Confidence 11 1234444689999999999999999999999999999999999999999843 457999998764
No 24
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=6.6e-74 Score=582.69 Aligned_cols=275 Identities=35% Similarity=0.525 Sum_probs=243.1
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-----
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~----- 219 (534)
+||||+||||||||||++|+++++.+.. .+.+||||++||+||+++++++|+|+++++|.++|||+|||+|++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR--RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH--TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh--cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 5999999999999999999999998864 457999999999999999999999999999999999999999985
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
++.++++++|++++||+||+||||||+++|++|++++. ++|||||||||||+|+||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 24678999999999999999999999999999998763 8899999999999999999999999999999999999
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCchh
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (534)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.|++++ .+++.|++++++ +++++||||||+...
T Consensus 154 ~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~~- 227 (282)
T PF00365_consen 154 KTTARSH-NRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKDG- 227 (282)
T ss_dssp HHHHHHS-TEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBSS-
T ss_pred HHhhccc-CCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchH---HHHHHhhhhhcccCceEEEEeccccccc-
Confidence 9999986 689999999999999999999999 899999999998776 899999998877 478999999999641
Q ss_pred hcccCCccccccccCCcchhhh-HHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 009444 379 VAQSMPAVDEKDASGNRLLLDI-GLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 457 (534)
Q Consensus 379 ~~~~l~~~~~~Da~Gn~~l~~i-g~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~ 457 (534)
.++ .+.+.+..++.++ +++|+..|||+|||+.|+++||.+|++||.+||+++++
T Consensus 228 -------------------~~i~~~~~~~~~~~~~~------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 228 -------------------QPISSEFIKELLEEGLG------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp -------------------HBHHHHHHHHHHHHTTT------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------ccccccccccccccccc------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 011 1234444444333 57889999999999999999999999999999999864
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=8.6e-72 Score=642.92 Aligned_cols=338 Identities=26% Similarity=0.359 Sum_probs=289.1
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ceeecCCC--
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG-- 219 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~-- 219 (534)
.++||||++|||||||||+||+++++.+.....+++||||++||+||+++++++|+|.+|++|+++||+ +|||+|..
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~ 255 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVR 255 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCC
Confidence 458999999999999999999999998865556789999999999999999999999999999999997 89999974
Q ss_pred --chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcc--ccCCCCChhhHHHHHHHH
Q 009444 220 --HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRA 295 (534)
Q Consensus 220 --~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~--gtD~S~GFdTAv~~~~~a 295 (534)
+++++++++|++++||+||+||||||+++|++|++++.+.+++++||||||||||||+ +||+|||||||+++++++
T Consensus 256 ~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~ 335 (1419)
T PTZ00287 256 NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEV 335 (1419)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-hhhHHH----HHHHHHHh-CCcEEEE
Q 009444 296 INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGLFE----FIERQLKE-NGHMVIV 369 (534)
Q Consensus 296 i~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~-~~~l~e----~I~~rl~~-~~~~vIV 369 (534)
|++++.++.+++++|||||||||+|||||++||||+ +||+|||||++|+.+. ++++.+ .|.+|+.. ++|+|||
T Consensus 336 I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIv 414 (1419)
T PTZ00287 336 IGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVIL 414 (1419)
T ss_pred HHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999988877889999999999999999999999 8999999998654332 234444 44445443 5899999
Q ss_pred EeCCCCch-------------------hhcccC----------------CccccccccCCcchhhhHH--HHHHHHHhhc
Q 009444 370 VAEGAGQE-------------------FVAQSM----------------PAVDEKDASGNRLLLDIGL--WLTQKIKDHF 412 (534)
Q Consensus 370 vaEGa~~~-------------------~~~~~l----------------~~~~~~Da~Gn~~l~~ig~--~L~~~I~e~~ 412 (534)
|+||+... +..+.+ +.+.++|++||+++++++. .|++.+++++
T Consensus 415 VsEGlie~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L 494 (1419)
T PTZ00287 415 IPEGLIEFVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESEL 494 (1419)
T ss_pred EeCCcchhcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHH
Confidence 99998651 010110 0123589999999987654 5666666555
Q ss_pred ccc--ceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHHHHhh
Q 009444 413 TKV--QKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTE 481 (534)
Q Consensus 413 ~~~--~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPl~~v~~ 481 (534)
.+. .+..++.+...+||+|||+.|+.+|+.||+.||..|++++.+|.||+|++++|- ++..+||..++.
T Consensus 495 ~~~~~~g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~ 572 (1419)
T PTZ00287 495 AKLNDNNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572 (1419)
T ss_pred HHHHhcCCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhh
Confidence 421 123577888899999999999999999999999999999999999999999972 245799999876
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=9.7e-65 Score=584.64 Aligned_cols=335 Identities=17% Similarity=0.195 Sum_probs=280.6
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcce-eecCCC-
Q 009444 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL-RTSRGG- 219 (534)
Q Consensus 142 ~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~L-GTsR~~- 219 (534)
+.++|||||||||||||||+|||++++++...++ . ++| ++||.||+++++++|+.++|++|+++|||+| ||+|..
T Consensus 834 ~~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g-~-~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~ 910 (1419)
T PTZ00287 834 SFEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKG-V-CIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHS 910 (1419)
T ss_pred cCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCC-e-EEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCC
Confidence 3568999999999999999999999998865433 3 455 5599999999999999999999999999998 999962
Q ss_pred ----chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccc--cCCCCChhhHHHHHH
Q 009444 220 ----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQ 293 (534)
Q Consensus 220 ----~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~g--tD~S~GFdTAv~~~~ 293 (534)
+.+++++++|++++||+||+||||||+++|+.|+|++.+.|++++||||||||||||.+ ||+|||||||+++++
T Consensus 911 f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~s 990 (1419)
T PTZ00287 911 LFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYA 990 (1419)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred HHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-----hhhHHHHHHHHHHh-CCcEE
Q 009444 294 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-----PGGLFEFIERQLKE-NGHMV 367 (534)
Q Consensus 294 ~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~-----~~~l~e~I~~rl~~-~~~~v 367 (534)
++|++++.||.|+++||||||||||+|||||++||||+ +||+|||||++++-+. .+.+++.|++|.+. ++|+|
T Consensus 991 eaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygI 1069 (1419)
T PTZ00287 991 SLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGT 1069 (1419)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEE
Confidence 99999999999998889999999999999999999999 8999999999987221 23566777777766 57899
Q ss_pred EEEeCCCCch-------------hhcc----------------------------------------------cCC----
Q 009444 368 IVVAEGAGQE-------------FVAQ----------------------------------------------SMP---- 384 (534)
Q Consensus 368 IVvaEGa~~~-------------~~~~----------------------------------------------~l~---- 384 (534)
|||+||.-.. ++.+ .++
T Consensus 1070 VlV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~ 1149 (1419)
T PTZ00287 1070 VLIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSL 1149 (1419)
T ss_pred EEEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHH
Confidence 9999996311 1100 111
Q ss_pred ------------ccccccccCCcchhhh--HHHHHHHHHhhccccce-----eEEeeeeeCCCccccCCCCChhhHHHHH
Q 009444 385 ------------AVDEKDASGNRLLLDI--GLWLTQKIKDHFTKVQK-----MMINMKYIDPTYMIRAIPSNGSDNIYCT 445 (534)
Q Consensus 385 ------------~~~~~Da~Gn~~l~~i--g~~L~~~I~e~~~~~~~-----~~~~~k~i~pgy~qRg~~p~a~Dr~~a~ 445 (534)
.+-.+|. ||+++..| .+.|++++++++...+. ..|...+--.||..||+.|+-||+.|||
T Consensus 1150 ~lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~Y 1228 (1419)
T PTZ00287 1150 ALLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAY 1228 (1419)
T ss_pred HHHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHHH
Confidence 1125787 99887643 45667776666542211 1233333347999999999999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHHHHhh
Q 009444 446 LLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTE 481 (534)
Q Consensus 446 ~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPl~~v~~ 481 (534)
.||+.|..++..|.||+|++++|- +...+||..++.
T Consensus 1229 ~LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ 1271 (1419)
T PTZ00287 1229 SYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1271 (1419)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhc
Confidence 999999999999999999999872 356799988766
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=5.9e-56 Score=508.99 Aligned_cols=332 Identities=16% Similarity=0.211 Sum_probs=267.8
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCc--ccCC----HHHHhhHhhcCCcceeec
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT--LTLS----PKVVNDIHKRGGTILRTS 216 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~--~~L~----~~~V~~i~~~GGs~LGTs 216 (534)
..+++|||+.|||+||+|+||.+++..+.+ .+ |+||++||.||++++. +.|+ .+.++.|+++||++|+++
T Consensus 674 ~~~~vgIv~~g~~aPG~NnVI~g~~~~~~~-~g---vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~ 749 (1328)
T PTZ00468 674 ACESLGLILSCLSTPGTQNVICGLVNGLPS-LK---QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNG 749 (1328)
T ss_pred cceeEEEEecCCCCccHHHHHHHHHHHHHh-CC---cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeecc
Confidence 347999999999999999999999998864 22 9999999999999875 4565 578999999999999999
Q ss_pred ----------CCC---------c---------------hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC--
Q 009444 217 ----------RGG---------H---------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-- 260 (534)
Q Consensus 217 ----------R~~---------~---------------d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g-- 260 (534)
|.. + +.+.+.+.|++++||+||+||||||+++|+.|+|++.+++
T Consensus 750 ~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~ 829 (1328)
T PTZ00468 750 VEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLN 829 (1328)
T ss_pred ccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccc
Confidence 631 1 3478999999999999999999999999999999987764
Q ss_pred ---CceeEeeeccccccCccc--cCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCc
Q 009444 261 ---LQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD 335 (534)
Q Consensus 261 ---~~i~vvgIPkTIDNDI~g--tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad 335 (534)
..++|||||||||||+++ ||+|||||||+++++++|.++..||.|+++||||||+|||+|||||+++|||+ +||
T Consensus 830 ~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat-gan 908 (1328)
T PTZ00468 830 GMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HPN 908 (1328)
T ss_pred cccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh-CCC
Confidence 469999999999999987 99999999999999999976666666667799999999999999999999999 899
Q ss_pred EEecCCCCC--------------CCCC-hhhHHHHHHHHHHh-CCcEEEEEeCCCCchh---------hcc---------
Q 009444 336 CCLIPESPF--------------YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQEF---------VAQ--------- 381 (534)
Q Consensus 336 ~ilIPE~pf--------------~le~-~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~---------~~~--------- 381 (534)
+|||||++. +++. .+.+++.|.+|.+. ++|++|||+||+.+.+ +.+
T Consensus 909 ivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~ 988 (1328)
T PTZ00468 909 LVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNA 988 (1328)
T ss_pred EEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhccccc
Confidence 999999973 3221 23455666677665 5789999999974322 111
Q ss_pred ------------cCC--------------------ccccccccCCcchhhh--HHHHHHHHHhhccccce-----eEEee
Q 009444 382 ------------SMP--------------------AVDEKDASGNRLLLDI--GLWLTQKIKDHFTKVQK-----MMINM 422 (534)
Q Consensus 382 ------------~l~--------------------~~~~~Da~Gn~~l~~i--g~~L~~~I~e~~~~~~~-----~~~~~ 422 (534)
.++ ...++| ||+++..| .+.|++++++++...+. ..|..
T Consensus 989 ~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~d--gn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~ 1066 (1328)
T PTZ00468 989 SNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLI--NSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNP 1066 (1328)
T ss_pred cchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccC--CCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccce
Confidence 011 012344 88888644 45677777666543211 12333
Q ss_pred eeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCC-CceEEEEeCC-------eeeeeeHHHHhh
Q 009444 423 KYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGF-TGFTVGPVNS-------RHAYIPIARVTE 481 (534)
Q Consensus 423 k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~-tg~mvgi~~~-------~~~~iPl~~v~~ 481 (534)
-+--.||..||+.|+-||+.|||.||+.|..++..|. ||+|.++.|- +...+||..++.
T Consensus 1067 ~~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~ 1133 (1328)
T PTZ00468 1067 VCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMT 1133 (1328)
T ss_pred eeccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhC
Confidence 3334799999999999999999999999999999999 6999999872 245799998776
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-54 Score=472.29 Aligned_cols=446 Identities=39% Similarity=0.512 Sum_probs=407.9
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHh--ccCCCCcccccccCCccccccCCCCeeE
Q 009444 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVI--QKDSPRGVHFRRAGPREKVYFKSDEVRA 147 (534)
Q Consensus 70 ~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~--~~~~~r~~~F~~ag~r~~~~f~~~~~ri 147 (534)
.++.|+..+...+.|++|.+++++..++.++.+...++..++.|.+.+.. .....+..+|.+.+|+++++|.++.+|+
T Consensus 44 ~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~ 123 (666)
T KOG2440|consen 44 DSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKA 123 (666)
T ss_pred cchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhc
Confidence 68999999999999999999999999999999999999999999998763 3444577889999999999999999999
Q ss_pred EEEccCCCCchhhHHHHHHHHHHH-HhCCCcEEEEEccc----------------ccccccCCc--ccCCHHHHhhHhhc
Q 009444 148 CIVTCGGLCPGINTVIREIVCGLS-YMYGVDEILGIEGG----------------YRGFYSKNT--LTLSPKVVNDIHKR 208 (534)
Q Consensus 148 aIvtsGG~aPGmNavIr~iv~~~~-~~~~~~~V~Gi~~G----------------~~GL~~~~~--~~L~~~~V~~i~~~ 208 (534)
|||||||.|||+|.+|+++|-.+. ..|+...++|+.-+ ++||+...+ ..+....|.+|+..
T Consensus 124 giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ia~~ 203 (666)
T KOG2440|consen 124 GIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAIAGG 203 (666)
T ss_pred ceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHhhcC
Confidence 999999999999999999999886 67888899998877 999999888 66777899999999
Q ss_pred CCcceeecCCCch---HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCCh
Q 009444 209 GGTILRTSRGGHD---TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGF 285 (534)
Q Consensus 209 GGs~LGTsR~~~d---~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GF 285 (534)
++++++++|..++ +.++++..+++++|.||||||+++.++|..++|+++++.++..++++||||||||+-.+.++||
T Consensus 204 aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~af 283 (666)
T KOG2440|consen 204 ADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVPSAF 283 (666)
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCCccccc
Confidence 9999999999776 8899999999999999999999999999999999999999999999999999999999988888
Q ss_pred h--hHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCC---------------------
Q 009444 286 D--TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPES--------------------- 342 (534)
Q Consensus 286 d--TAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~--------------------- 342 (534)
| ||++..+++|.+++.+|.|+.+++.||++|||+|+|+|++++||+++.|+|++||.
T Consensus 284 Dr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~ 363 (666)
T KOG2440|consen 284 DRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVVDPR 363 (666)
T ss_pred chHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhccccc
Confidence 8 99999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCCCC--ChhhHHHHHHHHHHhCCcEEEEEeCCCCchhhcccCCcc-ccccccCCcchhhhHHHHHHHHHhhcccc
Q 009444 343 ----PFYLE--GPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAV-DEKDASGNRLLLDIGLWLTQKIKDHFTKV 415 (534)
Q Consensus 343 ----pf~le--~~~~l~e~I~~rl~~~~~~vIVvaEGa~~~~~~~~l~~~-~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~ 415 (534)
||+.+ ..-..+++...+|+...|++++++|++++.++....... ..+|++++..+.|++.|+.+-.++++.+.
T Consensus 364 ~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~gtk~ 443 (666)
T KOG2440|consen 364 AEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALGTKR 443 (666)
T ss_pred cccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhheecc
Confidence 88877 444566788899999999999999999987766554321 23599999999999999999999987643
Q ss_pred ce-eEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCeeeeeeHHHHhhhcCCCCCCHHHHH
Q 009444 416 QK-MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWA 494 (534)
Q Consensus 416 ~~-~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~ 494 (534)
.. ....++||+|.|++|..+.+..|-.||+.+++.++|.+++++|++.+++++....+.|....++....++..+.+|.
T Consensus 444 ~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~~N~~~ 523 (666)
T KOG2440|consen 444 ETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTALNAWA 523 (666)
T ss_pred cCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchhHhhhh
Confidence 21 35689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCChhhHhhhh
Q 009444 495 RLLASTNQPSFLNCSEVLHHQ 515 (534)
Q Consensus 495 ~~l~~t~qp~f~~~~~~~~~~ 515 (534)
++++.|.||+|.....++.+.
T Consensus 524 ~~~d~t~Q~a~~T~~~vf~~e 544 (666)
T KOG2440|consen 524 RVCDSTKQSAFGTKRRVFVVE 544 (666)
T ss_pred hhhhhccCCcccccceeEEEE
Confidence 999999999999988777665
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-46 Score=405.33 Aligned_cols=374 Identities=18% Similarity=0.196 Sum_probs=324.3
Q ss_pred ccCCCcceeccccccccccCC-----CCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccC
Q 009444 48 VSRQNRPVVVAVRSSNQKVHN-----DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKD 122 (534)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~ 122 (534)
...-+|-+.|+...+..+-.- ..+..|||.++++.+|+ .+.+|+++|+++++++..|..++.++. +++
T Consensus 263 v~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s------~~~g~~~VRlmgr~~~~it~~~tla~~-~~d 335 (666)
T KOG2440|consen 263 VVGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES------AENGNGIVRLMGRESVHITLEATLASR-DKD 335 (666)
T ss_pred eecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchh------hcccceeEEehhHHHHHHHHHHHHhcC-ccc
Confidence 333445555554433333322 46779999999999888 589999999999999999999999988 777
Q ss_pred C-----CCcccccccC----------Ccc-ccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccc
Q 009444 123 S-----PRGVHFRRAG----------PRE-KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGY 186 (534)
Q Consensus 123 ~-----~r~~~F~~ag----------~r~-~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~ 186 (534)
| +|+.+|..++ ||. ..+|. .+++++|++.|.++.|||++++++++.+. +.++++|++.+||
T Consensus 336 ~~l~~elr~~~f~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~ii~~g~~~~~lnaa~~~~v~~a~--~~G~~~~~i~~~~ 412 (666)
T KOG2440|consen 336 FCLAPELRGRKFTLNLNTYKILDVVDPRAEQDPFY-GEIPGAIGLFGAPAAGLNAAGHSVLRYAE--GAGQDVIAISNGF 412 (666)
T ss_pred eeehhhhcchhhhhhhhHHhhhhccccccccCCCC-ceeccceeeechhhhHHHHHHHHHHHHhh--hcCceeEeeccch
Confidence 7 5888888866 222 22222 22679999999999999999999999885 5778999999999
Q ss_pred cccccCCcccCCHHHHhhHhhcCCcceeecCCC---chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-CCc
Q 009444 187 RGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQ 262 (534)
Q Consensus 187 ~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~---~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-g~~ 262 (534)
+||..+...++.|.+|..|..+||+.+||.|.. .+++.|..+|++++|++|+++||+.++.+...|+..+..| ++.
T Consensus 413 ~gl~~d~~~~~~~~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~ 492 (666)
T KOG2440|consen 413 EGLAKDALGELIWKDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFD 492 (666)
T ss_pred hhhhhhhhhhhHHHHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcc
Confidence 999999999999999999999999999999973 3899999999999999999999999999999998887776 889
Q ss_pred eeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCC
Q 009444 263 VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPES 342 (534)
Q Consensus 263 i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~ 342 (534)
+++|.||.||.|++|+|++|.|-|||+|.+++.++.+++.|..+++++|++|+||.+|||||..++|+. +++.+||||+
T Consensus 493 i~~v~ip~t~snnvpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~-ga~~a~v~e~ 571 (666)
T KOG2440|consen 493 IPMVNIPATYSNNVPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAP-GADAAYVPEE 571 (666)
T ss_pred cceEEeeeeecCCccccccccccchhHhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccc-cccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCCCChhhHHHHHHHHHHhC-CcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEe
Q 009444 343 PFYLEGPGGLFEFIERQLKEN-GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMIN 421 (534)
Q Consensus 343 pf~le~~~~l~e~I~~rl~~~-~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~ 421 (534)
+|++++++...+++..+++.. +..+++.+||+..++.+ .+|.+.+.+.-+. .+.
T Consensus 572 ~~~~~~l~~~~~~~~~k~~~~~~~~l~~r~e~a~~~~~t---------------------~~~~~~~~~~~~~----~f~ 626 (666)
T KOG2440|consen 572 GFSIKDLRENAEHLAEKMRYGNPRGLQLRNEGADANYTT---------------------LFLENIYSEEGKG----KFQ 626 (666)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCCceEEeCCCcchhhhH---------------------HHHHHHHhhhccc----ccc
Confidence 999998888889998887764 44599999999877653 3567766665432 478
Q ss_pred eeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 009444 422 MKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 457 (534)
Q Consensus 422 ~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~ 457 (534)
.|+..|||+|+|+.|+++||.++++||.+|++++..
T Consensus 627 ~~~~~~gh~qqgg~ps~~dr~~~~~m~~~a~~~~~~ 662 (666)
T KOG2440|consen 627 ARTNVLGHIQQGGSPSPFDRNMGTKMAVKAIELITI 662 (666)
T ss_pred eeeccccceecCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998754
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.18 E-value=0.27 Score=50.09 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=42.8
Q ss_pred HHHHHHHHhCC------cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhH---HHHHHH
Q 009444 224 KIVDNIEDRGI------NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA---VEEAQR 294 (534)
Q Consensus 224 ~iv~~l~~~~I------d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTA---v~~~~~ 294 (534)
..-+..++|++ |.+++||||||+-.|..... ...++|+||-. -++||-|. .+.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~ 74 (246)
T PRK04761 10 ALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLE 74 (246)
T ss_pred HHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHH
Confidence 33444566777 99999999999987665432 34688999964 26899884 355556
Q ss_pred HHHHHH
Q 009444 295 AINAAH 300 (534)
Q Consensus 295 ai~~i~ 300 (534)
.++++.
T Consensus 75 ~l~~~~ 80 (246)
T PRK04761 75 RIAAAE 80 (246)
T ss_pred HHHHhh
Confidence 666554
No 31
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.79 E-value=0.46 Score=48.84 Aligned_cols=56 Identities=27% Similarity=0.300 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 301 (534)
+.|.+++||||||+-.|...... .-.+++++||.. -++||-|.+ +.+-++++++..
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT----------GHLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC----------CCceecccCCHHHHHHHHHHHHc
Confidence 46899999999998776654321 114688999963 479999975 345666666643
No 32
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.96 E-value=0.63 Score=48.35 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 301 (534)
+.|.+++||||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++..
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHc
Confidence 6899999999999766555432 34678999842 479999884 556677776653
No 33
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.50 E-value=0.72 Score=47.42 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=37.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCC-ceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGL-QVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~-~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 301 (534)
+.|.+++||||||+-.|..... .. +++++||.. +-++||-|.+ +.+.++++++..
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHHc
Confidence 3689999999999877665432 22 467888842 2589998764 455566666543
No 34
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.86 E-value=0.48 Score=48.62 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCC-----cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH--HHHH-
Q 009444 223 NKIVDNIEDRGI-----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQR- 294 (534)
Q Consensus 223 ~~iv~~l~~~~I-----d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~- 294 (534)
+++.+.++.+++ |.+++||||||+-.|...+. ..+++|+||-. -++||-|.++ .+.+
T Consensus 18 ~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~----------G~lGFL~~~~~~~~~~~ 82 (259)
T PRK00561 18 PKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT----------GHLGFYTSFNETDLDQN 82 (259)
T ss_pred HHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec----------CCCccccccCHHHHHHH
Confidence 344445555555 99999999999887665542 35688999852 2799999644 4444
Q ss_pred HHHHH
Q 009444 295 AINAA 299 (534)
Q Consensus 295 ai~~i 299 (534)
.++.+
T Consensus 83 ~~~~l 87 (259)
T PRK00561 83 FANKL 87 (259)
T ss_pred HHHHH
Confidence 44444
No 35
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.53 E-value=0.78 Score=47.78 Aligned_cols=56 Identities=29% Similarity=0.365 Sum_probs=41.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHHhh
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVEV 303 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~~A 303 (534)
+.|.++++|||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++...-
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcCC
Confidence 5899999999999876665442 34688999953 479999986 45677777765443
No 36
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.44 E-value=0.6 Score=48.98 Aligned_cols=55 Identities=29% Similarity=0.432 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHHh
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~~ 302 (534)
+.|.++++|||||+-.|..... ..++||+||.. -++||-|.+ +.+.++++++...
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcC
Confidence 6899999999999887766543 34578999963 478998875 5566677776543
No 37
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.03 E-value=1.3 Score=45.08 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=36.9
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH--HHHHHHHHHHH
Q 009444 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAHV 301 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i~~ 301 (534)
.+.|.+++||||||+-.|.... +++|+||- --++||-|..+ .+-++++++..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin----------~G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFK----------AGRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEe----------CCCCccccccCHHHHHHHHHHHHc
Confidence 4679999999999997665432 57899985 23699998754 34556665543
No 38
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=87.73 E-value=0.34 Score=49.86 Aligned_cols=63 Identities=24% Similarity=0.524 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHH
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 301 (534)
.....+...+.|.++++|||||+..|..... ..+++|+||+. -+.||-|.. +.+.++++.+..
T Consensus 67 ~~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 67 NALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp ECCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHhc
Confidence 3344456789999999999999988776643 35789999984 356776653 344555555544
No 39
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.55 E-value=0.89 Score=47.68 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~ 300 (534)
++|.+++||||||+-.|..... ..+++++||-. -++||-|.+ +.+.++++++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999877665533 35688999942 389999874 44555565554
No 40
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.40 E-value=0.89 Score=47.47 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=39.7
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 301 (534)
+.|.++++|||||+-.|..... ...+|++||-. -++||-|.+ +.+.++++++..
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHHc
Confidence 6899999999999987766543 34678999952 369999984 455666666543
No 41
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.21 E-value=1.1 Score=46.54 Aligned_cols=53 Identities=26% Similarity=0.495 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH--HHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i~ 300 (534)
+.|.++++|||||+-.|..... ..+++|+||-. -++||-|.++ .+.++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDVL 117 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHHH
Confidence 6899999999999877665543 34578999852 4689988865 3344555443
No 42
>PLN02929 NADH kinase
Probab=86.88 E-value=1.1 Score=46.92 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=39.4
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecc---ccccCc-ccc----CCCCChhhHHH--HHHHHHHHHH
Q 009444 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK---TIDNDI-AVI----DKSFGFDTAVE--EAQRAINAAH 300 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPk---TIDNDI-~gt----D~S~GFdTAv~--~~~~ai~~i~ 300 (534)
.+.|.+|+||||||+-.|.... ..++||+||-. +.+.-- ... ..++||-|+++ .+-++++++.
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il 135 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVL 135 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHH
Confidence 4679999999999987766543 23578999842 221110 011 13899999854 4455565554
No 43
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=86.07 E-value=2.6 Score=46.06 Aligned_cols=119 Identities=24% Similarity=0.374 Sum_probs=69.5
Q ss_pred CCeeEEEEccCCCCchhhH-HHHH--HHHHHHHh------CCCcEEEEEccccccccc-CC---cccCCHHHHhhHhhcC
Q 009444 143 DEVRACIVTCGGLCPGINT-VIRE--IVCGLSYM------YGVDEILGIEGGYRGFYS-KN---TLTLSPKVVNDIHKRG 209 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNa-vIr~--iv~~~~~~------~~~~~V~Gi~~G~~GL~~-~~---~~~L~~~~V~~i~~~G 209 (534)
++.|||+||+||.-|--|. -|.+ ...+..+. ....+..-+|.||.--.- .+ +++|+ .+..+...|
T Consensus 222 ~~akIALvTsgGivPkgnPd~i~s~~A~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD--~LreLe~EG 299 (431)
T TIGR01917 222 SKAKIAIVTSGGIVPKGNPDHIESSSASKYGKYDIDGFDDLSEADHETAHGGHDPTYANEDADRVIPVD--VLRDLEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCccccccCCCceEEeCCccCcCCccceEEeccccChHHHhcCCCeeeeHH--HHHHHHHcC
Confidence 5679999999999997775 2321 11110000 001233445666655432 11 33333 334444443
Q ss_pred --C----ccee-----ecCC--CchHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCce
Q 009444 210 --G----TILR-----TSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQV 263 (534)
Q Consensus 210 --G----s~LG-----TsR~--~~d~~~iv~~l~~~~Id~LvvIGGdgS-~~~A~~L~e~~~~~g~~i 263 (534)
| .+.+ |++. ...-++|++.|++.++|+++..-.=|| .+....+.+++++.|+++
T Consensus 300 ~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 300 KIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred CcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 2 1222 2221 134578999999999999999977776 556677889999988653
No 44
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=85.74 E-value=1.2 Score=49.80 Aligned_cols=53 Identities=32% Similarity=0.429 Sum_probs=39.0
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~ 300 (534)
++|.+|+||||||+-.|..+.. ...+||+||- --++||-|.+ +.+.++++++.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHH
Confidence 6899999999999987776643 3457899983 2489999875 44555666654
No 45
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=85.28 E-value=2.8 Score=45.78 Aligned_cols=122 Identities=23% Similarity=0.366 Sum_probs=70.7
Q ss_pred CCeeEEEEccCCCCchhhH-HHHHH--HHHHHHh------CCCcEEEEEccccccccc-CC---cccCCHHHHhhHhhcC
Q 009444 143 DEVRACIVTCGGLCPGINT-VIREI--VCGLSYM------YGVDEILGIEGGYRGFYS-KN---TLTLSPKVVNDIHKRG 209 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNa-vIr~i--v~~~~~~------~~~~~V~Gi~~G~~GL~~-~~---~~~L~~~~V~~i~~~G 209 (534)
++.|||+||+||.-|=-|. -|.+. ..+..+. ....+..-+|.||.--.- .+ +++|+ .+..+...|
T Consensus 222 ~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD--~LreLekEG 299 (431)
T TIGR01918 222 SKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPDRVVPVD--VLRDYEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCccccCccceEEeccccChHHHhcCCCeeeeHH--HHHHHHHcC
Confidence 5679999999999998883 44321 1100000 001123344556654432 11 23333 333333333
Q ss_pred --C----cceee-----cCC--CchHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCceeEeee
Q 009444 210 --G----TILRT-----SRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 210 --G----s~LGT-----sR~--~~d~~~iv~~l~~~~Id~LvvIGGdgS-~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
| .+.+| ++. ...-.+|++.|++-++|+++....=|| .+....+.+++++.|++ +|.|
T Consensus 300 ~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiP--vv~~ 370 (431)
T TIGR01918 300 KIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIP--VVHM 370 (431)
T ss_pred CcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC--EEEE
Confidence 1 12222 221 134589999999999999999988777 55667788999998865 4444
No 46
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=84.26 E-value=1.6 Score=46.50 Aligned_cols=49 Identities=39% Similarity=0.665 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDN 274 (534)
+|+-..++.+.++|+|-++..|||||.+..+. .. +-++||.|||.=.-|
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~---av---~~~vPvLGipaGvk~ 135 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVAE---AV---GADVPVLGIPAGVKN 135 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHHh---hc---cCCCceEeeccccce
Confidence 68999999999999999999999999887553 22 457899999974443
No 47
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.11 E-value=1.6 Score=45.46 Aligned_cols=54 Identities=30% Similarity=0.422 Sum_probs=40.1
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 301 (534)
+.|.++++|||||+-.+..... ..+++|+||.. -++||-|++ +.+.++++++..
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHHHHc
Confidence 6899999999999877764432 34688999974 368999874 456667776654
No 48
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=83.88 E-value=54 Score=33.46 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=53.5
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
...||++...-.-|-.+.++.++...+.. ++ ..++- .-+....+...
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 110 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEA-QG-RMVFL-------------------------------LQGGKDGEQLA 110 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCCHHHHH
Confidence 35899998777778888888888877753 22 22221 00112223445
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
..++.|...++|++++.+.+.... .+.+.+.+.++ |+|.+
T Consensus 111 ~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~i--PvV~~ 150 (342)
T PRK10014 111 QRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKGI--PVVFA 150 (342)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcCC--CEEEE
Confidence 778888899999999998765322 22344444554 45543
No 49
>PRK11914 diacylglycerol kinase; Reviewed
Probab=83.31 E-value=3.1 Score=42.89 Aligned_cols=70 Identities=30% Similarity=0.511 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhh-HHHHHHHHH
Q 009444 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAI 296 (534)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT-Av~~~~~ai 296 (534)
..+..++++...+.+.|.++++|||||...+.. .+. +.++++..||.==-||+. +++|..+ -.+.+.+++
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i 120 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVI 120 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHH
Confidence 446777777777888999999999999886542 222 345678889988889987 5777765 355544444
No 50
>PRK13054 lipid kinase; Reviewed
Probab=83.15 E-value=10 Score=39.03 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=55.1
Q ss_pred CCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHH-HHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHH
Q 009444 217 RGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (534)
Q Consensus 217 R~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~-~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~a 295 (534)
+...+..++++...+.+.|.++++|||||+..+. .|.+. ..+.++++..||.==-||+. +++|-..-.+.+.+.
T Consensus 40 ~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~~ 114 (300)
T PRK13054 40 WEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA---TAAGIPLEPDKALKL 114 (300)
T ss_pred cCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHHH
Confidence 3344566777777677899999999999987754 33221 01334678889987888875 345544333333333
Q ss_pred HHHHHHhhhhcCCceEEEEecCC
Q 009444 296 INAAHVEVESVENGVGIVKLMGR 318 (534)
Q Consensus 296 i~~i~~~A~S~~~rv~iVEvMGR 318 (534)
|. ....+.+-+.++=+|
T Consensus 115 i~------~g~~~~iDlg~v~~~ 131 (300)
T PRK13054 115 AI------EGRAQPIDLARVNDR 131 (300)
T ss_pred HH------hCCceEEEEEEEcCc
Confidence 22 122345666666555
No 51
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=82.95 E-value=13 Score=37.77 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=76.6
Q ss_pred ceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccC--ccccCCCCChh--h
Q 009444 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND--IAVIDKSFGFD--T 287 (534)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDND--I~gtD~S~GFd--T 287 (534)
+|.++....+.++.++.|.++++|++++.+-.........+.+ . ++|||.+=.+.+++ ++ ++.+| .
T Consensus 35 ~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~~~----~V~~D~~~ 104 (279)
T PF00532_consen 35 LLCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEGVP----SVYIDNYE 104 (279)
T ss_dssp EEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCTSC----EEEEEHHH
T ss_pred EEecCCCchHHHHHHHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCcccCC----EEEEcchH
Confidence 3445555556669999999999999999976666444333322 2 57788887777766 33 22233 2
Q ss_pred HHHHHHHHHHHHHHhhhhcCCc-eEEEEe-------cCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHH
Q 009444 288 AVEEAQRAINAAHVEVESVENG-VGIVKL-------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 359 (534)
Q Consensus 288 Av~~~~~ai~~i~~~A~S~~~r-v~iVEv-------MGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~r 359 (534)
|...+ .+.+. ..+| ++ |.++-. .-|..||..+....-- ..+-.+|.+..++.+ .=.+.+++-
T Consensus 105 a~~~a---~~~Li--~~Gh-~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~---~g~~~~~~l 174 (279)
T PF00532_consen 105 AGYEA---TEYLI--KKGH-RRPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYE---SGYEAAREL 174 (279)
T ss_dssp HHHHH---HHHHH--HTTC-CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHH---HHHHHHHHH
T ss_pred HHHHH---HHHHH--hccc-CCeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHH---HHHHHHHHH
Confidence 33333 33332 2344 56 666654 3356678765443211 235566666666554 334555555
Q ss_pred HHhCCc--EEE
Q 009444 360 LKENGH--MVI 368 (534)
Q Consensus 360 l~~~~~--~vI 368 (534)
++.+.. +|+
T Consensus 175 l~~~p~idai~ 185 (279)
T PF00532_consen 175 LESHPDIDAIF 185 (279)
T ss_dssp HHTSTT-SEEE
T ss_pred HhhCCCCEEEE
Confidence 555533 554
No 52
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.97 E-value=46 Score=32.49 Aligned_cols=127 Identities=10% Similarity=0.084 Sum_probs=68.0
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-chHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTNK 224 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~~ 224 (534)
+|||+...-..|-...+++++.+.+.....+..++ +..+... .....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 48 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT--------------------------------VVSADYDLNKQVS 48 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE--------------------------------EccCCCCHHHHHH
Confidence 47888877677888888888888775321111111 1112222 23346
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHhhh
Q 009444 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~ 304 (534)
+++.+...++|++++.+.+.. ......+.+.+++ ++||.+-. +.+..+.++|+|-. .....+.+.+...+.
T Consensus 49 ~i~~~~~~~~dgiIi~~~~~~--~~~~~i~~~~~~~--ipvv~~~~----~~~~~~~~V~~d~~-~~g~~~~~~l~~~~~ 119 (271)
T cd06321 49 QIDNFIAAKVDLILLNAVDSK--GIAPAVKRAQAAG--IVVVAVDV----AAEGADATVTTDNV-QAGEISCQYLADRLG 119 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChh--HhHHHHHHHHHCC--CeEEEecC----CCCCccceeeechH-HHHHHHHHHHHHHhC
Confidence 777788899999999876543 1122224445555 55666622 22233456666642 222333333333323
Q ss_pred hcCCceEEEE
Q 009444 305 SVENGVGIVK 314 (534)
Q Consensus 305 S~~~rv~iVE 314 (534)
.+ ++|.++-
T Consensus 120 g~-~~i~~i~ 128 (271)
T cd06321 120 GK-GNVAILN 128 (271)
T ss_pred CC-ceEEEEe
Confidence 43 4677774
No 53
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.85 E-value=2.2 Score=44.14 Aligned_cols=52 Identities=29% Similarity=0.370 Sum_probs=36.2
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH--HHHHHHHHH
Q 009444 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAA 299 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i 299 (534)
.+.|.++++|||||+-.|..+. ..+++++|||. -+.||-|.++ .+-++++++
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~----------G~lGFl~~~~~~~~~~~l~~i 109 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM----------GTLGFLTEVEPEETFFALSRL 109 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC----------CCCCccccCCHHHHHHHHHHH
Confidence 4789999999999998766532 33688999984 3568888755 233444444
No 54
>PRK13337 putative lipid kinase; Reviewed
Probab=81.37 E-value=7.9 Score=40.01 Aligned_cols=90 Identities=24% Similarity=0.279 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHH
Q 009444 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (534)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 298 (534)
..+..++++.+.+.+.|.|+++|||||...+..- +...+.++++..||.==-||+. +++|...-...+.+++
T Consensus 43 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~g---l~~~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~~i-- 114 (304)
T PRK13337 43 PGDATLAAERAVERKFDLVIAAGGDGTLNEVVNG---IAEKENRPKLGIIPVGTTNDFA---RALHVPRDIEKAADVI-- 114 (304)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHH---HhhCCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHHHH--
Confidence 3566777777777888999999999998776532 2223334677889987778875 3445443333333332
Q ss_pred HHHhhhhcCCceEEEEecCCCc
Q 009444 299 AHVEVESVENGVGIVKLMGRYS 320 (534)
Q Consensus 299 i~~~A~S~~~rv~iVEvMGR~s 320 (534)
. .+..+.+-+.++-+|..
T Consensus 115 -~---~g~~~~vDlg~vn~~~f 132 (304)
T PRK13337 115 -I---EGHTVPVDIGKANNRYF 132 (304)
T ss_pred -H---cCCeEEEEEEEECCEEE
Confidence 2 12224466666666543
No 55
>PRK13055 putative lipid kinase; Reviewed
Probab=80.91 E-value=5.1 Score=42.13 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=43.9
Q ss_pred ecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHH-HHHHHHHHcCCceeEeeeccccccCccccCCCCChhh
Q 009444 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (534)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~-~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT 287 (534)
|.+...+.+++++.....+.|.|+++|||||+..+. .|. ..+..+++.-||.==-||+. +++|..+
T Consensus 41 t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~----~~~~~~~LgiiP~GTgNdfA---r~Lgi~~ 107 (334)
T PRK13055 41 TTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIA----PLEKRPKMAIIPAGTTNDYA---RALKIPR 107 (334)
T ss_pred eecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHh----hcCCCCcEEEECCCchhHHH---HHcCCCC
Confidence 433334566677666678899999999999987654 332 22334567779987778875 3555543
No 56
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.55 E-value=1.9 Score=45.12 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHH---HHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA---QRAINAAHV 301 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~---~~ai~~i~~ 301 (534)
+.|.++++|||||+..+..... +.+++++||.. .-++||-|..... .++++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~ 114 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQE 114 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHc
Confidence 6899999999999877665432 34678898864 3488999976422 456666553
No 57
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=80.22 E-value=3 Score=43.37 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhH--HHHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA--VEEAQRAINAAH 300 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTA--v~~~~~ai~~i~ 300 (534)
+.|.++++|||||+..|..... +.+++++||- --++||-|. .+.+.++++++.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------HGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------CCCccccccCCHHHHHHHHHHHH
Confidence 5899999999999987765432 3467899985 247899986 345666676664
No 58
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.33 E-value=1.8 Score=44.74 Aligned_cols=52 Identities=27% Similarity=0.507 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH--HHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAA 299 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i 299 (534)
+.|.+++||||||+-.|..... ..++||+||-. -++||-|.++ .+.+.+.++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~ 95 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEAC 95 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999987665432 34688999842 4689988753 334444443
No 59
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=79.15 E-value=32 Score=36.12 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=87.0
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ 223 (534)
-.||++..--.-|-...+++++-..|.. ++ ..+ +|..+.. .+..+
T Consensus 59 ~~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~g-y~~--------------------------------~l~~~~~~~~~e~ 104 (333)
T COG1609 59 KTIGLVVPDITNPFFAEILKGIEEAARE-AG-YSL--------------------------------LLANTDDDPEKER 104 (333)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEE--------------------------------EEECCCCCHHHHH
Confidence 3677776544446666777777666643 22 122 3445554 34567
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc-cCcc--ccCCCCChhhHHHHHHHHHHHHH
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID-NDIA--VIDKSFGFDTAVEEAQRAINAAH 300 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID-NDI~--gtD~S~GFdTAv~~~~~ai~~i~ 300 (534)
++.+.+...++|++|+.| ...... +.+.+.+.+++ +|.|=.+.+ .+++ ++|.--|...|++...+
T Consensus 105 ~~~~~l~~~~vdGiIi~~-~~~~~~---~~~~l~~~~~P--~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~------ 172 (333)
T COG1609 105 EYLETLLQKRVDGLILLG-ERPNDS---LLELLAAAGIP--VVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIE------ 172 (333)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCHH---HHHHHHhcCCC--EEEEeCCCccCCCCEEEEChHHHHHHHHHHHHH------
Confidence 889999999999999999 222222 22333444554 554433333 3332 23433344444433322
Q ss_pred HhhhhcCCceEEEEe-------cCCCcchHHHHHhhhcCCCc--EEecCCCCCCCCChhhHHHHHHHHHHhC
Q 009444 301 VEVESVENGVGIVKL-------MGRYSGFISMYATLASRDVD--CCLIPESPFYLEGPGGLFEFIERQLKEN 363 (534)
Q Consensus 301 ~~A~S~~~rv~iVEv-------MGR~sG~LAl~aaLAs~~ad--~ilIPE~pf~le~~~~l~e~I~~rl~~~ 363 (534)
.+| +++.++-. .-|..||+.+.... +.. -.++.+..|+.+ .-.+.+.+-+...
T Consensus 173 ---~G~-~~i~~i~~~~~~~~~~~R~~Gf~~al~~~---~~~~~~~~i~~~~~~~~---~g~~~~~~ll~~~ 234 (333)
T COG1609 173 ---LGH-RRIAFIGGPLDSSASRERLEGYRAALREA---GLPINPEWIVEGDFSEE---SGYEAAERLLARG 234 (333)
T ss_pred ---CCC-ceEEEEeCCCccccHhHHHHHHHHHHHHC---CCCCCcceEEecCCChH---HHHHHHHHHHhcC
Confidence 233 45666543 33445777654432 333 366666667554 3445455555443
No 60
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=79.11 E-value=15 Score=40.94 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=62.4
Q ss_pred cEEEEEcccccccccCCcccCCHHHHhhHhhcCC---cceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHH-HH
Q 009444 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG---TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LI 252 (534)
Q Consensus 177 ~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GG---s~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~-~L 252 (534)
.+++-|.|=..|= +.-..+-++.+..+....| .+.-|.+. .+..++++.+...+.|.++++|||||+..+. -|
T Consensus 112 kr~lvIvNP~SGk--g~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGGK--KSASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCCC--cchhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 4777788877773 2222222345666666655 23444443 4566777777778899999999999987643 33
Q ss_pred HHHH-HHcCCceeEeeeccccccCccc
Q 009444 253 YKEV-EKRGLQVAVAGIPKTIDNDIAV 278 (534)
Q Consensus 253 ~e~~-~~~g~~i~vvgIPkTIDNDI~g 278 (534)
.+.- .+.+.++++.-||.==-||+.-
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred hhCccccccccCceEEecCcCcchhhh
Confidence 2100 0014467889999988898853
No 61
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.60 E-value=3.5 Score=46.80 Aligned_cols=53 Identities=32% Similarity=0.460 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~ 300 (534)
++|.+++||||||+-.|..... ...+||+||-. -++||-|.+ +.+.++++++.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~ 402 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSII 402 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHH
Confidence 6899999999999877665532 34688999853 479999975 44555666554
No 62
>PLN02727 NAD kinase
Probab=77.56 E-value=3.2 Score=49.35 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHHh
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~~ 302 (534)
++|.+|+||||||+-.|..+.. +..+||+||-. -++||-|-+ +.+.+.++++...
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHHHHHHHHcC
Confidence 6899999999999988776653 34578999842 389999865 4556777766543
No 63
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=75.75 E-value=74 Score=30.15 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=73.1
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
|||++..+-..|-.+.+++++-..+.. .+ .++.- +.+........+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g-~~l~~-------------------------------~~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AG-YQVLL-------------------------------ANSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cC-CeEEE-------------------------------EeCCCCHHHHHHH
Confidence 589999877788888888888776653 22 11110 0111111235677
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHhhhh
Q 009444 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 305 (534)
Q Consensus 226 v~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S 305 (534)
++.+...++|++++.+.+.+... ..+.+.+.+ +++|.+-.+.+. .....++++|.. +....+.+.+....
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~--~~~~~~v~~d~~-~~~~~~~~~l~~~g-- 117 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPD--GDRVPSVGSDNE-QAGYLAGEHLAEKG-- 117 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCC--CcccceEecCcH-HHHHHHHHHHHHhc--
Confidence 77778889999999988766544 223333344 567777665553 122345555543 23344444444332
Q ss_pred cCCceEEEEec
Q 009444 306 VENGVGIVKLM 316 (534)
Q Consensus 306 ~~~rv~iVEvM 316 (534)
.++|.++--.
T Consensus 118 -~~~i~~i~~~ 127 (264)
T cd01537 118 -HRRIALLAGP 127 (264)
T ss_pred -CCcEEEEECC
Confidence 4568877543
No 64
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=75.17 E-value=5.6 Score=41.11 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=34.7
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
...+.++++|||||+-.|..... ...++|+||= --++||-|-.+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin----------~G~lGFLt~~~ 97 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGIN----------LGHLGFLTDFE 97 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEe----------CCCcccccccC
Confidence 67899999999999988876654 3347899883 23899998876
No 65
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.85 E-value=5.4 Score=41.21 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHHh
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~~ 302 (534)
+.|.++++|||||+-.|.... .+||+||-. -++||-|.+ +.+.++++++...
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHcC
Confidence 789999999999986654421 247898842 478998864 4455666666543
No 66
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.53 E-value=92 Score=30.22 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCc
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDG 244 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdg 244 (534)
..+.++.+...++|++++.+.+.
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~ 67 (275)
T cd06317 45 QAAQVEDLIAQKVDGIILWPTDG 67 (275)
T ss_pred HHHHHHHHHHcCCCEEEEecCCc
Confidence 34667777788999999988764
No 67
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=72.93 E-value=15 Score=37.72 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=42.2
Q ss_pred ecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHH-HHHHHHHHcCCceeEeeeccccccCcc
Q 009444 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (534)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~-~L~e~~~~~g~~i~vvgIPkTIDNDI~ 277 (534)
+.+...+..++++.+.+.+.|.++++|||||+..+. .|.+. ..+..+++.-||.==-||+.
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 444445667777777778899999999999987754 33221 11234568889987788874
No 68
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=72.84 E-value=99 Score=30.31 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCC
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGD 243 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGd 243 (534)
...++++.|...++|++++.+.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 44 DYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHHcCCCEEEECCcc
Confidence 34577788889999999998755
No 69
>PRK06186 hypothetical protein; Validated
Probab=72.44 E-value=6.8 Score=39.60 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=39.7
Q ss_pred CCcEEEEEcCCcc--hHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHhhhhc
Q 009444 233 GINQVYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (534)
Q Consensus 233 ~Id~LvvIGGdgS--~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~ 306 (534)
++|+++|.||+|. ..|.....+++++++ +|+.|| |+|++.|+=+.++.+-. ..+|.|.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI-------------ClGmQ~avIe~arnv~g-~~dA~s~ 112 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT-------------CGGFQHALLEYARNVLG-WADAAHA 112 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee-------------chhhHHHHHHHHhhhcC-CcCCCcC
Confidence 5799999999996 455566677776654 567777 99999877555543321 3355554
No 70
>PRK00861 putative lipid kinase; Reviewed
Probab=72.28 E-value=18 Score=37.16 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=62.8
Q ss_pred EEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHH
Q 009444 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256 (534)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~ 256 (534)
+++-|.|-..|--+. ...|..+......+.. .+-..+...+..++++...+.+.|.++++|||||+..+.. .+
T Consensus 4 ~~~iI~NP~sG~~~~---~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l 77 (300)
T PRK00861 4 SACLIFNPVAGQGNP---EVDLALIRAILEPEMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAG---AL 77 (300)
T ss_pred eEEEEECCCCCCCch---hhhHHHHHHHHHhcCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHH---HH
Confidence 455566655553322 1234555554444322 1212233456677777777888999999999999877542 22
Q ss_pred HHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHH
Q 009444 257 EKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (534)
Q Consensus 257 ~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~a 295 (534)
. +.++++..||.==-||+. +++|...-...+.+.
T Consensus 78 ~--~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~ 111 (300)
T PRK00861 78 I--GTDIPLGIIPRGTANAFA---AALGIPDTIEEACRT 111 (300)
T ss_pred h--cCCCcEEEEcCCchhHHH---HHcCCCCCHHHHHHH
Confidence 2 224667888986677765 456665544444443
No 71
>PRK13059 putative lipid kinase; Reviewed
Probab=70.89 E-value=14 Score=38.06 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=40.8
Q ss_pred HHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHH
Q 009444 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (534)
Q Consensus 228 ~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~a 295 (534)
...+.+.+.++++|||||...+. +.+.+.+.++++..||.==-||+. +++|...-...+.+.
T Consensus 51 ~~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~ 112 (295)
T PRK13059 51 KDIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQ 112 (295)
T ss_pred HHhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHH
Confidence 33356889999999999987654 333334556788889987778874 355654434444443
No 72
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=70.73 E-value=53 Score=31.57 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=40.2
Q ss_pred CCchHHHHHHHHHH---hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 218 GGHDTNKIVDNIED---RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 218 ~~~d~~~iv~~l~~---~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
+.-|..-+++.++- .++|.++++-||+-++- |.+.++++|..+-++|.|+.
T Consensus 87 G~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 87 GDVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred CcccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 35688888888776 69999999999999976 45566677988888887653
No 73
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=69.72 E-value=1.3e+02 Score=30.56 Aligned_cols=69 Identities=4% Similarity=0.081 Sum_probs=44.5
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
..||++...-..|=...+++++-..+.. ++ .+++-+. +........+
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 106 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQ-KG-YTLILCN-------------------------------AWNNLEKQRA 106 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHHH
Confidence 4899998777777788888888777653 33 2332110 1111122346
Q ss_pred HHHHHHHhCCcEEEEEcCCcch
Q 009444 225 IVDNIEDRGINQVYIIGGDGTQ 246 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdgS~ 246 (534)
.++.+...++|++++.+++...
T Consensus 107 ~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 107 YLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHcCCCEEEEecCCCCH
Confidence 6777888999999999876443
No 74
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=69.66 E-value=17 Score=37.04 Aligned_cols=50 Identities=26% Similarity=0.446 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHH-HHHHHHHcCCceeEee-eccccccCcc
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEVEKRGLQVAVAG-IPKTIDNDIA 277 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~-L~e~~~~~g~~i~vvg-IPkTIDNDI~ 277 (534)
...++...+.+.|.++++|||||+..+.. |.+ .. +.+.+| ||.==-||+.
T Consensus 47 ~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 47 ARYVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 34444455668999999999999987553 322 11 233455 8976677765
No 75
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=67.94 E-value=28 Score=38.44 Aligned_cols=97 Identities=14% Similarity=0.231 Sum_probs=64.2
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC
Q 009444 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 140 f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
.+.-+.+|||||| ++. ||||-+...+...++..+|+-+.-=. +|=. ..
T Consensus 131 LP~~p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt~V---------------------QG~~------A~ 178 (440)
T COG1570 131 LPFFPKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPTLV---------------------QGEG------AA 178 (440)
T ss_pred CCCCCCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEeccc---------------------cCCC------cH
Confidence 3445569999998 443 68999999888888866776433111 1100 01
Q ss_pred chHHHHHHHHHHhC-CcEEEEEcCCcchHHHHHHHHHHHHc---CCceeEeee
Q 009444 220 HDTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVAGI 268 (534)
Q Consensus 220 ~d~~~iv~~l~~~~-Id~LvvIGGdgS~~~A~~L~e~~~~~---g~~i~vvgI 268 (534)
..+-+.++.+.+++ +|.|||.=|-||..-.-.+.+|...+ ..+||||.-
T Consensus 179 ~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 179 EEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred HHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEee
Confidence 33445566666666 99999999999998877666664443 456777743
No 76
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=67.87 E-value=1.4e+02 Score=30.08 Aligned_cols=69 Identities=9% Similarity=0.161 Sum_probs=44.6
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (534)
...||++...-..|-.+.++.++-..+.. ++ .+++- ..+.. ....
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~~ 101 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFE-RG-YSLVL--------------------------------CNTEGDEQRM 101 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EeCCCCHHHH
Confidence 34899988665667788888888777753 22 23221 11111 1233
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcch
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQ 246 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~ 246 (534)
.+.++.|...++|++++.+.+...
T Consensus 102 ~~~~~~l~~~~vdGiI~~~~~~~~ 125 (327)
T PRK10423 102 NRNLETLMQKRVDGLLLLCTETHQ 125 (327)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcch
Confidence 467778888999999999876543
No 77
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=67.56 E-value=11 Score=39.49 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH--cCCceeEeeeccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK--RGLQVAVAGIPKT 271 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~--~g~~i~vvgIPkT 271 (534)
...+++++.+++.+.|.++-|||--.+..|..++-.... +.-.+++|.||-|
T Consensus 65 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 65 EVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 356799999999999999999999999988876543322 1224789999987
No 78
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.09 E-value=1.3e+02 Score=29.34 Aligned_cols=90 Identities=11% Similarity=0.126 Sum_probs=54.7
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
.|||+...-..|-.+.+++++.+.+.+ ++ ..++- ..+........+.
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~ 47 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA-AG-YSLLI-------------------------------ANSLNDPERELEI 47 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCChHHHHHH
Confidence 378888776778888888888877754 33 23321 1111112234577
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc
Q 009444 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (534)
Q Consensus 226 v~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID 273 (534)
++.+...++|++++.+++.... .+.+.+++.+ ++||.+=...+
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccC
Confidence 8889999999999998864322 2334444555 45665543333
No 79
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=66.54 E-value=38 Score=32.22 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=55.4
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchH
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 222 (534)
+..||.++ || .|+ ++..++..+...|++.++.|.++||-+..+. .+.++.|...+-.++=.+=+.+.-
T Consensus 45 ~~~~v~ll--G~-~~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~------~~i~~~I~~~~pdiv~vglG~PkQ 112 (171)
T cd06533 45 KGLRVFLL--GA-KPE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEE------EEIIERINASGADILFVGLGAPKQ 112 (171)
T ss_pred cCCeEEEE--CC-CHH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhH------HHHHHHHHHcCCCEEEEECCCCHH
Confidence 35677777 44 444 4444455556679999999999999874321 125667777766665555444444
Q ss_pred HHHHHHHH-HhCCcEEEEEcC
Q 009444 223 NKIVDNIE-DRGINQVYIIGG 242 (534)
Q Consensus 223 ~~iv~~l~-~~~Id~LvvIGG 242 (534)
|..+..++ +.+-..++.+||
T Consensus 113 E~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 113 ELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHHCCCCEEEEece
Confidence 55544444 445677888888
No 80
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=66.04 E-value=30 Score=36.16 Aligned_cols=108 Identities=22% Similarity=0.264 Sum_probs=65.1
Q ss_pred EEEEEcccccccccCCcccCCHHHHhh-HhhcCCcce--eecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHH-HHHHH
Q 009444 178 EILGIEGGYRGFYSKNTLTLSPKVVND-IHKRGGTIL--RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG-AALIY 253 (534)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~-i~~~GGs~L--GTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~-A~~L~ 253 (534)
++..|.|-..| ++. ..-.|..+.. +...|.+.. =|... .+..++++.+...+.|.+++.|||||... ++-|.
T Consensus 4 ~~~~i~Np~sG--~~~-~~~~~~~~~~~l~~~g~~~~~~~t~~~-g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 4 KALLIYNPTSG--KGK-AKKLLREVEELLEEAGHELSVRVTEEA-GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred eEEEEEccccc--ccc-hhhHHHHHHHHHHhcCCeEEEEEeecC-ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 56667777777 222 2334444444 444444321 12221 36888888888889999999999999875 34443
Q ss_pred HHHHHcCCceeEeeeccccccCccccCCCCChhh-HHHHHHHHHH
Q 009444 254 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAIN 297 (534)
Q Consensus 254 e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT-Av~~~~~ai~ 297 (534)
+ .+... +--||.==-||+. +++|... ....+.+.+.
T Consensus 80 ~----~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 80 G----TDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIK 116 (301)
T ss_pred c----CCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHH
Confidence 3 33332 6778876667764 3566665 3555555443
No 81
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=65.28 E-value=11 Score=39.65 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~g 278 (534)
+..+++++.+++.+.|.+|-|||--.+..|..++. . + .+++|.||-|..+|-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~-~--~--~~p~i~iPTT~~t~s~~ 118 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAY-K--L--GIPFISVPTAASHDGIA 118 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHH-h--c--CCCEEEecCcccCCccc
Confidence 45788999999999999999999988888887762 2 2 46799999998766443
No 82
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=65.05 E-value=10 Score=40.27 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--------------CCceeEeeeccccccCc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--------------GLQVAVAGIPKTIDNDI 276 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~--------------g~~i~vvgIPkTIDNDI 276 (534)
.+.+++++.++++++|.+|-|||--++..|..++-..... +-.+++|.||-|--+--
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGs 135 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGS 135 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSG
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccc
Confidence 4688999999999999999999999999998887655421 11278999998765443
No 83
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=64.96 E-value=70 Score=31.31 Aligned_cols=91 Identities=22% Similarity=0.366 Sum_probs=60.9
Q ss_pred EEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEccccccccc---------CCcccCCHHHHhhHhhcCCcceeecCC
Q 009444 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG 218 (534)
Q Consensus 148 aIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR~ 218 (534)
+++.+||+.+-.... ..++. ....++|+-.|..=|++ |++=-++++..+.+...|-.+.-....
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~~--~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~ 73 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLWK--KADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDE 73 (208)
T ss_pred CEEEECCcCCcchhH-----HHhhc--cCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCC
Confidence 367788888744433 22222 33478999999876654 344456666666665553334433332
Q ss_pred C--chHHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 219 G--HDTNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 219 ~--~d~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
+ -|++++++.+.+++.+-++++|+.|.
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 2 37999999999999999999999996
No 84
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.88 E-value=1.4e+02 Score=28.79 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
+..+.++.+...++|++++.+.+.+-. ..+.+.+.+ +++|.+
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~~~~~----~~~~~~~~~--ipvV~~ 83 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGTLSSE----LAEECRRNG--IPVVLI 83 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHhhcC--CCEEEE
Confidence 445677888889999999988764432 133444445 556655
No 85
>PRK13057 putative lipid kinase; Reviewed
Probab=64.34 E-value=21 Score=36.56 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHH
Q 009444 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (534)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~ 298 (534)
..+..++++. ...+.|.++++|||||+..+.. .+. +.++++..||.==-||+.- ++|...-...+.+.
T Consensus 37 ~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~---~l~--~~~~~lgiiP~GT~Ndfar---~Lg~~~~~~~a~~~--- 104 (287)
T PRK13057 37 PDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAP---ALV--ETGLPLGILPLGTANDLAR---TLGIPLDLEAAARV--- 104 (287)
T ss_pred HHHHHHHHHH-HHcCCCEEEEECchHHHHHHHH---HHh--cCCCcEEEECCCCccHHHH---HcCCCCCHHHHHHH---
Confidence 3455666665 3567899999999999887642 222 2346788899877788742 44444333333333
Q ss_pred HHHhhhhcCCceEEEEecCCC
Q 009444 299 AHVEVESVENGVGIVKLMGRY 319 (534)
Q Consensus 299 i~~~A~S~~~rv~iVEvMGR~ 319 (534)
+. .++.+++-+.++-+|+
T Consensus 105 i~---~~~~~~vD~g~~~~~~ 122 (287)
T PRK13057 105 IA---TGQVRRIDLGWVNGHY 122 (287)
T ss_pred HH---cCCeEEeeEEEECCEE
Confidence 22 1222446566655543
No 86
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=63.13 E-value=13 Score=39.23 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID 273 (534)
++..++++.+++++.|.+|-|||--.+..|..++-. ..+++|.||-|--
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTag 112 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIAS 112 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCccc
Confidence 457788999999999999999999999998888643 2478999998843
No 87
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=63.08 E-value=8 Score=40.84 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.++ |.++-|||--.+..|..++-.. .+| +++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~ 121 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH
Confidence 457899999999998 9999999988888887765422 245 6799999987
No 88
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=63.04 E-value=12 Score=39.60 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDND 275 (534)
+..+++++.+++.++|.++-|||--.+..|..++-.. .+++|.||-|-..+
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtg 113 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccC
Confidence 4678999999999999999999999999888886542 46899999887544
No 89
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=62.62 E-value=15 Score=38.97 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEeeeccccccCc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 276 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-------------g~~i~vvgIPkTIDNDI 276 (534)
+...++++.+++.+.|.++-|||--.+..|..++-..... .-.+++|.||-|-..+-
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgs 136 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGS 136 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchh
Confidence 4578999999999999999999999999888776543110 11478999998765443
No 90
>PRK12361 hypothetical protein; Provisional
Probab=62.56 E-value=19 Score=40.45 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcc
Q 009444 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (534)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~ 277 (534)
..+..++++...+.+.|.++++|||||...+.. .+. +.++++--||.==-||+.
T Consensus 283 ~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~--~~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 283 EISAEALAKQARKAGADIVIACGGDGTVTEVAS---ELV--NTDITLGIIPLGTANALS 336 (547)
T ss_pred CccHHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHh--cCCCCEEEecCCchhHHH
Confidence 345677777777788999999999999877643 222 234667888987777775
No 91
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=61.32 E-value=14 Score=39.07 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDND 275 (534)
+..+++++.+++.+.|.++-|||--.+..|..++ + .++ +++|.||-|...|
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~rg--ip~I~IPTT~~td 124 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RLG--IPFISVPTAASHD 124 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hcC--CCEEEeCCCccCC
Confidence 4578999999999999999999988888887776 2 234 6799999996433
No 92
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=60.75 E-value=13 Score=39.50 Aligned_cols=62 Identities=26% Similarity=0.416 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhh
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT 287 (534)
+..+++++.+++.++ |.++.|||--.+..|..++-.. .++ +++|.||-|. +..+|.++|--+
T Consensus 76 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~g--ip~i~IPTT~---~s~~ds~~~~k~ 140 (358)
T PRK00002 76 ETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MRG--IRFIQVPTTL---LAQVDSSVGGKT 140 (358)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cCC--CCEEEcCchh---hhccccCcCCce
Confidence 457888999999887 9999999998888887776321 234 6799999997 333455555333
No 93
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=59.14 E-value=18 Score=38.16 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID 273 (534)
+..+++++.+++.+.|.+|-|||--.+..|..++-.. ++++|.||-|-.
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtat 112 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLS 112 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCch
Confidence 4578899999999999999999999999888776432 478999997753
No 94
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=58.99 E-value=15 Score=38.16 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDND 275 (534)
+..+++++.+++.+.|.++-|||--.+..|..++-... + .+++|.||-|...+
T Consensus 65 ~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~tg 117 (332)
T cd07766 65 EEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCchh
Confidence 45788899999999999999999988988887765432 2 46799999876543
No 95
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=58.33 E-value=14 Score=39.44 Aligned_cols=64 Identities=34% Similarity=0.502 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHhCC----cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH
Q 009444 220 HDTNKIVDNIEDRGI----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I----d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (534)
+..+++++.+.+.++ |.++-|||--.+..|..++-.. ++| +++|.||-|. +..+|.+.|.-+++
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~---lA~vD~~~g~K~~i 138 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL---VGLIDAGVGIKTGV 138 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc---ceeeecCCCCceEE
Confidence 457888999999998 9999999988888877775422 234 6899999997 33345555544443
No 96
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=58.20 E-value=20 Score=37.80 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
...+++++.+++++. |.++.|||--.+..|..++-.. .++ +++|.||-|.
T Consensus 65 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~~--~p~i~VPTT~ 117 (344)
T TIGR01357 65 ETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MRG--IRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-ccC--CCEEEecCch
Confidence 357888999999988 8999999998888887776422 234 6799999987
No 97
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=57.22 E-value=2.1e+02 Score=28.47 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=49.2
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
+|||+...-.-|-...++.++...+.. ++ .++.- ..+........++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~ 47 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE-LG-AEVIV-------------------------------QNANGDPAKQISQ 47 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHHHH
Confidence 367777655667777777777766643 22 22220 1111112334577
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 226 v~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
++.+...++|++++.+.+.+. ...+.+++.+.+ ++||.+
T Consensus 48 i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~~~~--ipvV~~ 86 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEA--LASAVEKAADAG--IPVIAY 86 (288)
T ss_pred HHHHHHcCCCEEEEecCChhh--HHHHHHHHHHCC--CCEEEE
Confidence 777888999999998866542 122334455555 556654
No 98
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=56.97 E-value=22 Score=38.16 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE 255 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~ 255 (534)
...+++++.+++.+.|.++-|||--.+..|..++-.
T Consensus 71 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 71 DQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 457899999999999999999999999988877654
No 99
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=56.40 E-value=24 Score=37.72 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC--------------CceeEeeeccccccC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG--------------LQVAVAGIPKTIDND 275 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g--------------~~i~vvgIPkTIDND 275 (534)
...+++++.+++.++|.+|-|||--.+..|..++-....-+ -.+++|.||-|--.+
T Consensus 70 ~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTG 139 (374)
T cd08189 70 ENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTG 139 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccc
Confidence 35789999999999999999999999998887764432111 126889999775443
No 100
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=55.96 E-value=12 Score=41.72 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 221 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 221 d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
..+++++.|.++++ |.++.|||--....|-.++... .|| |+.|.||-|+ +..+|-|+|-=||+|.
T Consensus 222 ~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y-~RG--i~~i~vPTTl---la~vDssiggK~~vn~ 289 (488)
T PRK13951 222 HVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF-KRG--VGLSFYPTTL---LAQVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-hcC--CCeEecCccH---HHHHhcCCCCCeeeeC
Confidence 47899999999999 9999999987777766655433 457 5689999998 4678899998888876
No 101
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=55.91 E-value=2e+02 Score=27.77 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=66.1
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
.||++...-..|-.+..+.++.+.+.+ ++ ..++-+. +.........+
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AG-YSTIIGN-------------------------------SDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cC-CEEEEEe-------------------------------CCCCHHHHHHH
Confidence 367777666677888888888777653 33 2333110 11111234577
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc-CCCCChhhHHHHHHHHHHHHHHhhh
Q 009444 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHVEVE 304 (534)
Q Consensus 226 v~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~~i~~~A~ 304 (534)
++.+...++|++++.+.+.... . .+.+++.++ ++|. +|++.+.. -.+++.|-. .....+++.+.. .
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~---~-~~~l~~~~i--pvV~----~~~~~~~~~~~~v~~d~~-~~~~~~~~~l~~--~ 114 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE---Q-LEDLLKRGI--PVVF----VDREITGSPIPFVTSDPQ-PGMTEAVSLLVA--L 114 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH---H-HHHHHhCCC--CEEE----EecccCCCCCCEEEECcH-HHHHHHHHHHHH--c
Confidence 8889999999999998765532 2 345555564 4553 34444321 123454432 122333444432 2
Q ss_pred hcCCceEEE
Q 009444 305 SVENGVGIV 313 (534)
Q Consensus 305 S~~~rv~iV 313 (534)
++ ++|.++
T Consensus 115 g~-~~I~~i 122 (265)
T cd06299 115 GH-KKIGYI 122 (265)
T ss_pred CC-CcEEEE
Confidence 43 457666
No 102
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=55.51 E-value=78 Score=28.79 Aligned_cols=86 Identities=23% Similarity=0.451 Sum_probs=53.8
Q ss_pred EEEEEccccccccc----------CCcccCCHHHHhhHhhcCCcceeecCCC--chHHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 178 EILGIEGGYRGFYS----------KNTLTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 178 ~V~Gi~~G~~GL~~----------~~~~~L~~~~V~~i~~~GGs~LGTsR~~--~d~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
-++++-.|..=|++ |++=-++++....+...|-.++-.. .+ -|++++++.+.+++.+-++++|+.|.
T Consensus 18 ~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-~kD~TD~e~Al~~~~~~~~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 18 FIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFP-EKDYTDLEKALEYAIEQGPDEIIVLGALGG 96 (123)
T ss_dssp EEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE--STTS-HHHHHHHHHHHTTTSEEEEES-SSS
T ss_pred EEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccc-ccccCHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 45566666555543 3455677766666767765666555 32 47999999999999999999999995
Q ss_pred -----hHHHHHHHHHHHHcCCceeE
Q 009444 246 -----QKGAALIYKEVEKRGLQVAV 265 (534)
Q Consensus 246 -----~~~A~~L~e~~~~~g~~i~v 265 (534)
+.....|.++. +.+.++.+
T Consensus 97 R~DH~lanl~~l~~~~-~~~~~i~l 120 (123)
T PF04263_consen 97 RFDHTLANLNLLYKYK-KRGIKIVL 120 (123)
T ss_dssp SHHHHHHHHHHHHHHH-TTTSEEEE
T ss_pred cHHHHHHHHHHHHHHH-HcCCeEEE
Confidence 44444454443 44655443
No 103
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=55.33 E-value=23 Score=37.80 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEeeeccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKT 271 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-------------~g~~i~vvgIPkT 271 (534)
+..+++++.+++.++|.++-|||--.+..|..++-.... ....+++|.||-|
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 67 ESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 457899999999999999999999999988777521110 1234789999987
No 104
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=55.13 E-value=1.7e+02 Score=30.29 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=58.2
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecC-CCch
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-GGHD 221 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR-~~~d 221 (534)
+..+||++..+-..|--+.+++++.+.+.. ++ ..++ +.++. ....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g-~~l~--------------------------------i~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVF--------------------------------VQSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EECCCCCHHH
Confidence 467999999888889999999999888753 22 2332 11111 1223
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
..+.++.|...++|++++.+.+.... ....+.+.+.+ ++||.+-..+
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCC
Confidence 45778888899999999997653311 12223444445 5677664444
No 105
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=54.68 E-value=2.4e+02 Score=31.17 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=93.0
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
++||.-+ ||-==.||+++.+.+.. .+.-| .++-|.+.|+.. ||- |.=++.|+...
T Consensus 12 ~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~~ 66 (420)
T TIGR02810 12 PRGIYSV---CSAHPLVLEAAIRRARA--SGTPV--------------LIEATSNQVNQF---GGY---TGMTPADFRDF 66 (420)
T ss_pred CCeEEEE---CCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 5677765 55445799998886653 22222 366777777765 775 55566665444
Q ss_pred -HHHHHHhCCcE-EEEEcCCc-------------chHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 226 -VDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 226 -v~~l~~~~Id~-LvvIGGdg-------------S~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
.+.-++.+++. .+++|||- +|..|..+.+...+.|+. -|+|=.|++ ..+-..-+.-+|-++
T Consensus 67 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vAe 142 (420)
T TIGR02810 67 VETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CAGDPAPLDDATVAE 142 (420)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 44456779998 99999985 567777777777777986 588888877 222234566788999
Q ss_pred HHHHHHHHHHHhhh---hcCCceEEE
Q 009444 291 EAQRAINAAHVEVE---SVENGVGIV 313 (534)
Q Consensus 291 ~~~~ai~~i~~~A~---S~~~rv~iV 313 (534)
.+++.|..+-.++. ....-+++|
T Consensus 143 Raa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 143 RAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 99988886666554 323346777
No 106
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=54.37 E-value=1.9e+02 Score=32.04 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=94.8
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
++||.-+ ||-==.||+++.+.+.. .+.-| .++-|.+.|+.. ||- |.=++.|+...
T Consensus 16 ~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~~ 70 (426)
T PRK15458 16 TNGIYAV---CSAHPLVLEAAIRYALA--NDSPL--------------LIEATSNQVDQF---GGY---TGMTPADFRGF 70 (426)
T ss_pred CceEEEe---cCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 5677765 55444789998876653 22222 366777777765 775 55666675444
Q ss_pred -HHHHHHhCCcE-EEEEcCCc-------------chHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 226 -VDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 226 -v~~l~~~~Id~-LvvIGGdg-------------S~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
.+.-++.+++. .+++|||- +|..|..+.+...+.|++ -|+|=.|++ ..+....+.-+|-++
T Consensus 71 V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~pL~d~~vA~ 146 (426)
T PRK15458 71 VCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPIPLTDEIVAE 146 (426)
T ss_pred HHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCCCCChHHHHH
Confidence 44456779998 99999984 577777777777777986 588877777 555556666699999
Q ss_pred HHHHHHHHHHHhhh---hcCCceEEE
Q 009444 291 EAQRAINAAHVEVE---SVENGVGIV 313 (534)
Q Consensus 291 ~~~~ai~~i~~~A~---S~~~rv~iV 313 (534)
.+++.|..+-.++. ....-+++|
T Consensus 147 Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 147 RAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 99988886665552 222347777
No 107
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=54.13 E-value=18 Score=32.44 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhC-CcEEEEEcCCcchHHHHHHHHHHHHcCC--ceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 221 DTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 221 d~~~iv~~l~~~~-Id~LvvIGGdgS~~~A~~L~e~~~~~g~--~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
..+.+....+..+ .+.++++|||||+..+. ..+.+... ++++.-||.==-||+. +++|+.+-...
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred hHHHHHHHHhhccCccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 3444444333333 48999999999987754 33333333 4588999986777764 35666655554
No 108
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=53.63 E-value=27 Score=37.32 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~ 253 (534)
+..+++++.+++.++|.+|-|||--++..|..++
T Consensus 68 ~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia 101 (375)
T cd08179 68 ETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMW 101 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 4578899999999999999999999999988776
No 109
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=53.58 E-value=1.4e+02 Score=29.59 Aligned_cols=85 Identities=16% Similarity=0.037 Sum_probs=49.3
Q ss_pred eEEEEccCCC-CchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 146 RACIVTCGGL-CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 146 riaIvtsGG~-aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
||+|++...+ ..|+...++.+++.+........++....+.......... ++..............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 67 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQ-------------EVVRVIVLDNPLDYRR 67 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcc-------------cceeeeecCCchhHHH
Confidence 6889987766 7899999999999887533222344433333222111100 1111111112235567
Q ss_pred HHHHHHHhCCcEEEEEcCC
Q 009444 225 IVDNIEDRGINQVYIIGGD 243 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGd 243 (534)
+.+.+++.+.|.+++.-..
T Consensus 68 ~~~~~~~~~~dii~~~~~~ 86 (366)
T cd03822 68 AARAIRLSGPDVVVIQHEY 86 (366)
T ss_pred HHHHHhhcCCCEEEEeecc
Confidence 7788899999988775533
No 110
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=53.48 E-value=25 Score=37.60 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc---------------CCceeEeeeccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR---------------GLQVAVAGIPKT 271 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~---------------g~~i~vvgIPkT 271 (534)
+..+++++.+++.+.|.++-|||--.+..|..++-....- .-.+++|.||-|
T Consensus 73 ~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 73 TVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 4578899999999999999999999898887665322111 123688999987
No 111
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=52.83 E-value=17 Score=38.70 Aligned_cols=66 Identities=18% Similarity=0.388 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
+..+++++.+.+.+. |.++.|||--++..|..++- .-.+|. +.+.||.|.- ...|.++|.-|++|.
T Consensus 60 ~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~-~~~rgi--~~i~iPTTll---a~vds~ig~k~~vn~ 128 (346)
T cd08196 60 EAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVAS-IYMRGV--SWSFVPTTLL---AQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHH-HHHcCC--CeEEecccHH---HhhhccccccceecC
Confidence 357899999999999 89999999888887776654 334564 6899998742 345667777776663
No 112
>PLN02834 3-dehydroquinate synthase
Probab=52.74 E-value=15 Score=40.37 Aligned_cols=62 Identities=24% Similarity=0.363 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhh
Q 009444 220 HDTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT 287 (534)
+..+++++.+.++++| .++.|||--.+..|..++-.. .+| +++|.||-|. +..+|.+.|--+
T Consensus 147 ~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl---lA~vDss~ggK~ 211 (433)
T PLN02834 147 ETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV---MAQVDSSVGGKT 211 (433)
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC---CeEEecCCCcee
Confidence 4567888999999998 999999998888877665322 234 6899999995 334454544333
No 113
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=52.68 E-value=2.2e+02 Score=27.35 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=50.1
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHHH
Q 009444 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (534)
Q Consensus 147 iaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv 226 (534)
||++..+-.-|.....++++-+.+.. ++ .+++-+. +.....+..+++
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEA-AG-YQLLLGN-------------------------------TGYSPEREEELL 48 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHH-cC-CEEEEec-------------------------------CCCCchhHHHHH
Confidence 67777777778888888888776653 33 2332111 011122345778
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
+.+...++|++++.+-+.+. . ..+.+.+.+ ++||.+
T Consensus 49 ~~l~~~~vdgiii~~~~~~~-~---~~~~~~~~~--ipvv~~ 84 (268)
T cd01575 49 RTLLSRRPAGLILTGLEHTE-R---TRQLLRAAG--IPVVEI 84 (268)
T ss_pred HHHHHcCCCEEEEeCCCCCH-H---HHHHHHhcC--CCEEEE
Confidence 88889999999999877552 2 222333344 566766
No 114
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=52.21 E-value=29 Score=36.86 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH------------cCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------------RGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~------------~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.+.|.++-|||--.+..|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 70 ETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 457899999999999999999999999998876532110 12246789999764
No 115
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=52.10 E-value=2.3e+02 Score=27.37 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
....++.|...++|++++++.+.+... .+.+++.+ +++|.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~~----~~~l~~~~--iPvv~~ 84 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPAL----LDLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 456777788889999999987654322 23344445 556654
No 116
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=51.93 E-value=2.6e+02 Score=28.03 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=49.2
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNK 224 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~~ 224 (534)
+||++...=.-|-...+++++-+.+.. ++ .++.- ++.+.. .....+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g-~~v~~-------------------------------~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LG-VDAIY-------------------------------VGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hC-CeEEE-------------------------------ECCCCCCHHHHHH
Confidence 467777555567778888888777753 33 23221 112211 233456
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.++.+...++|++++.+.+.+ ....+.+.+++.++ +||.+
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~i--PvV~v 87 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAGI--KVVTH 87 (298)
T ss_pred HHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCCC--eEEEE
Confidence 777777889999999875532 22233344555554 45544
No 117
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=51.91 E-value=1e+02 Score=31.95 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=55.9
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC
Q 009444 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 140 f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
++.-+.||||||| -..+|+.++++.+-+ .++..+++-+.==+ +|= -..
T Consensus 10 lP~~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~~v---------------------QG~------~A~ 57 (319)
T PF02601_consen 10 LPKFPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPASV---------------------QGE------GAA 57 (319)
T ss_pred CCCCCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEeccc---------------------ccc------chH
Confidence 3455679999998 456677777766654 34444554322111 110 001
Q ss_pred chHHHHHHHHHHh----CCcEEEEEcCCcchHHHHHH-----HHHHHHcCCceeEe-eecccccc
Q 009444 220 HDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALI-----YKEVEKRGLQVAVA-GIPKTIDN 274 (534)
Q Consensus 220 ~d~~~iv~~l~~~----~Id~LvvIGGdgS~~~A~~L-----~e~~~~~g~~i~vv-gIPkTIDN 274 (534)
.++-+.++.+.+. .+|.++++=|-||...-..+ ++.+. ..++||| ||=-.+|.
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~--~~~~PvisaIGHe~D~ 120 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIA--ASPIPVISAIGHETDF 120 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHH--hCCCCEEEecCCCCCc
Confidence 2233444444444 39999999999998776544 33333 3444544 55444443
No 118
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=51.78 E-value=1.1e+02 Score=31.17 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=87.0
Q ss_pred eEEEEc-cCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchHH
Q 009444 146 RACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (534)
Q Consensus 146 riaIvt-sGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ 223 (534)
||+||| |+.+-| .... +.++ ..++-+.==+.|-.-.+-++++++.+-......|.+-.||-- ..++.
T Consensus 1 Ki~IitDS~~dl~------~~~~----~~~~-i~vvPl~i~~~~~~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~ 69 (280)
T PF02645_consen 1 KIAIITDSTSDLP------PELA----EEYG-IYVVPLNIIIDGKEYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFE 69 (280)
T ss_dssp -EEEEEEGGG---------HHHH----HHTT-EEEE--EEEETTEEEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHH
T ss_pred CEEEEECCCCCCC------HHHH----HhCC-eEEEeEEEecCCeEEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHH
Confidence 678888 544444 1222 2243 344433322333221233488999988888777887778765 45788
Q ss_pred HHHHHHHHhCCcEEEEE----cCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHH-
Q 009444 224 KIVDNIEDRGINQVYII----GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA- 298 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvI----GGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~- 298 (534)
++.+.+.+.+-+.+++| |=.||+..|...++.+ .+.+|.|+ |.- ..|.|..=-+..+++.+++
T Consensus 70 ~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi------DS~----~~s~g~g~lv~~a~~l~~~G 137 (280)
T PF02645_consen 70 EAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI------DSK----SVSAGQGLLVLEAAKLIEQG 137 (280)
T ss_dssp HHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE------E-S----S-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE------eCC----CcchhhhHHHHHHHHHHHcC
Confidence 99998888999988887 5677888888887766 34454444 111 1234444444444444432
Q ss_pred -----HHHhhh---hcCCceEEEEe------cCCCcchHHHHHhhh
Q 009444 299 -----AHVEVE---SVENGVGIVKL------MGRYSGFISMYATLA 330 (534)
Q Consensus 299 -----i~~~A~---S~~~rv~iVEv------MGR~sG~LAl~aaLA 330 (534)
+..... ...+-+|+++. =||=++--|+.+.+-
T Consensus 138 ~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL 183 (280)
T PF02645_consen 138 KSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLL 183 (280)
T ss_dssp --HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhh
Confidence 222221 11234778887 466665555555544
No 119
>PRK05670 anthranilate synthase component II; Provisional
Probab=51.73 E-value=29 Score=33.27 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=31.9
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
++.++.|+||+-||.|+...+....+.+++..-++||.|| |+|++--..
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI-------------ClG~Qlla~ 87 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV-------------CLGHQAIGE 87 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE-------------CHHHHHHHH
Confidence 3556789999999999876543333333222234678887 999875443
No 120
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=51.65 E-value=27 Score=39.16 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=37.7
Q ss_pred CcEEEEEcCCcchH--HHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHhhhhc
Q 009444 234 INQVYIIGGDGTQK--GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (534)
Q Consensus 234 Id~LvvIGGdgS~~--~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~ 306 (534)
+|+++|-||+|.-- |--...++++++ ++|..|| |+|++.|+=+.++.+-.+. .|.|+
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn--~iP~lGI-------------ClGmQ~aviE~ARnv~Gl~-~AnS~ 402 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYAREN--NIPFLGI-------------CLGMQLAVIEFARNVLGLE-GANST 402 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhc--CCCEEEE-------------chhHHHHHHHHHHHhcCCc-cCccc
Confidence 99999999999532 223334555544 3567777 9999999977776554332 34443
No 121
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=51.48 E-value=30 Score=37.19 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-------------~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.+.|.++-|||--++..|..++-.... ....+++|.||-|=
T Consensus 75 ~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 75 ENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 457899999999999999999999999998877632111 01246788888754
No 122
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=51.30 E-value=28 Score=37.66 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 254 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e 254 (534)
...++.++.+++.+.|.+|-|||--++..|..++-
T Consensus 93 ~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~ 127 (395)
T PRK15454 93 TDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVAL 127 (395)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHH
Confidence 35788999999999999999999999999987654
No 123
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.16 E-value=2.4e+02 Score=27.36 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=49.3
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeec-CCCchHHHH
Q 009444 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-RGGHDTNKI 225 (534)
Q Consensus 147 iaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs-R~~~d~~~i 225 (534)
|||+...-..|-.+.+++++-..+.+ ++ .+++ +..+ ...+...+.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~~~ 47 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YG-YTVL--------------------------------LCNTYRGGVSEADY 47 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHHHHH
Confidence 67777666677777777777776653 22 2222 1111 112334578
Q ss_pred HHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCceeEeee
Q 009444 226 VDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 226 v~~l~~~~Id~LvvIGGdgS-~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
++.|...++|++++.+..-. ........+.+.+++ ++||.+
T Consensus 48 i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~--ipvV~i 89 (273)
T cd06292 48 VEDLLARGVRGVVFISSLHADTHADHSHYERLAERG--LPVVLV 89 (273)
T ss_pred HHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCC--CCEEEE
Confidence 89999999999999985422 221112223344455 456654
No 124
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=50.81 E-value=30 Score=36.90 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-------------g~~i~vvgIPkTI 272 (534)
...+++++.+++.++|.+|-|||--.+..|..++-..... .-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 70 AVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 4578999999999999999999999998887775432110 1246789998764
No 125
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=50.32 E-value=22 Score=37.63 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI 276 (534)
+...++++.+++.+.|.+|-|||--.+..|..++.. ..+++|.||-|-..+-
T Consensus 64 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtgs 115 (349)
T cd08550 64 EEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTCA 115 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 357889999999999999999999999998888642 2467999998854443
No 126
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=50.26 E-value=26 Score=37.44 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
...+++++.+.+.++| .++.|||--.+..|..++-.. .++ +++|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl 120 (355)
T cd08197 68 STLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL 120 (355)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc
Confidence 3578999999999998 999999988888776665321 234 6799999885
No 127
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=50.24 E-value=28 Score=37.02 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
..+++++.+++.+.|.++-|||--.+..|..++-. ..+++|.||-|
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTt 117 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCc
Confidence 56788999999999999999999999888877632 24789999987
No 128
>PRK05637 anthranilate synthase component II; Provisional
Probab=50.18 E-value=37 Score=33.50 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=36.5
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
+.+.+.+.+++|+-||-|+...+....+.+++..-++||.|| |+|++.-...
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~a 89 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEH 89 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHH
Confidence 445577899999999999997765443434322225788888 9998866554
No 129
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=50.10 E-value=29 Score=36.92 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-----------------cCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-----------------RGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-----------------~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.++|.+|-|||--.+..|..++-.... ..-.+++|.||-|-
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 64 EDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 357889999999999999999999999988877643211 01247889999773
No 130
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=49.43 E-value=32 Score=36.74 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-------------~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.+.|.++-|||--.+..|..++-.... ....+++|.||-|-
T Consensus 72 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 72 TNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 357889999999999999999999999988877532111 11346788888654
No 131
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=49.10 E-value=39 Score=36.48 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~ 253 (534)
...+++++.+++.++|.+|-|||--++..|..++
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 65 ETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 3578999999999999999999999999987775
No 132
>PRK15138 aldehyde reductase; Provisional
Probab=48.87 E-value=32 Score=37.10 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 254 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e 254 (534)
+..+++++.+++.+.|.++-|||--++..|..++-
T Consensus 72 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 72 ETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 46789999999999999999999999999887764
No 133
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=48.35 E-value=2.7e+02 Score=27.11 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
....++.|...++|++++.+.+.+... ...+++.+++ ++||.+-..+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 46 QLSIAENMINKGYKGLLFSPISDVNLV--PAVERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHHhCCCEEEECCCChHHhH--HHHHHHHHCC--CeEEEECCCC
Confidence 456788888899999988765543211 1234455555 5677664433
No 134
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=48.34 E-value=32 Score=33.18 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=33.5
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
+.+.+++.|+||+-||.|+...+..-.+.+++..-++||.|| |+|++-....
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE-------------CHHHHHHHHH
Confidence 445677899999999999875422211222222235788888 9998865543
No 135
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=48.18 E-value=38 Score=26.62 Aligned_cols=50 Identities=8% Similarity=0.251 Sum_probs=37.0
Q ss_pred eeecCCCchHHHHHHHHHHhCCcE------------EEEEcCCcchHHHHHHHHHHH-HcCCc
Q 009444 213 LRTSRGGHDTNKIVDNIEDRGINQ------------VYIIGGDGTQKGAALIYKEVE-KRGLQ 262 (534)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~------------LvvIGGdgS~~~A~~L~e~~~-~~g~~ 262 (534)
+|+-+...+.++.++.|++.+++. -|.+|.+.+...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 677777778889999999999885 678899999999988888887 55654
No 136
>PRK10586 putative oxidoreductase; Provisional
Probab=48.03 E-value=24 Score=37.74 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChh
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 286 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFd 286 (534)
++.+++.+..+ .+.|.+|-|||--++..|..++.. ..+++|.||-|-.+|-+.+..+.-++
T Consensus 74 ~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~avi~~ 134 (362)
T PRK10586 74 SDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLSVWYN 134 (362)
T ss_pred HHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCceEEEC
Confidence 34455655554 588999999999999999888753 35789999999999887776666554
No 137
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=46.70 E-value=44 Score=33.26 Aligned_cols=94 Identities=14% Similarity=0.291 Sum_probs=58.0
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccc------ccc--ccCCcccCCH--HHHhhH----hhcCC
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGY------RGF--YSKNTLTLSP--KVVNDI----HKRGG 210 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~------~GL--~~~~~~~L~~--~~V~~i----~~~GG 210 (534)
+||||+..-|-+. ..+...+. .++|+|.+|-.-- +|+ ++.++.+++. +++.+. ...|+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~--~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEAL--KRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHH--hCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 5899998666543 34455554 3679999987543 343 3456777776 454442 11121
Q ss_pred cceeecCC---CchHHHHHHHHHHhCCcEEEEEcCCcchHH
Q 009444 211 TILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (534)
Q Consensus 211 s~LGTsR~---~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~ 248 (534)
.. +.-. ....+.+++.|+.-+..-|+|+||-||+.-
T Consensus 73 ~~--~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 73 GA--SDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred CC--CChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 11 0000 012466888888889999999999999853
No 138
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=46.43 E-value=2e+02 Score=33.05 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=65.1
Q ss_pred HHHHHHHHH--hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHH
Q 009444 223 NKIVDNIED--RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (534)
Q Consensus 223 ~~iv~~l~~--~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~ 300 (534)
++++..++. +-||+++|-+|--++.-|..|-+++-.-|++ -|+-=|.||| .|...-
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe---------------------qI~svi 168 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE---------------------QIRSVI 168 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH---------------------HHHHHH
Confidence 345555544 5699999999999999999999998777775 3555676664 222222
Q ss_pred HhhhhcCCceEEEEecCCCcc-h----------HHHHHhhhcCCCcEEecCC
Q 009444 301 VEVESVENGVGIVKLMGRYSG-F----------ISMYATLASRDVDCCLIPE 341 (534)
Q Consensus 301 ~~A~S~~~rv~iVEvMGR~sG-~----------LAl~aaLAs~~ad~ilIPE 341 (534)
.-|..++.-=-++..-|+.+| | ||+++.|.+ .+|++|+--
T Consensus 169 ~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~-~~NIvl~vG 219 (717)
T COG4981 169 RIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRS-RDNIVLCVG 219 (717)
T ss_pred HHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhc-CCCEEEEec
Confidence 234444444455665555554 3 899999998 789888644
No 139
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=46.32 E-value=1.5e+02 Score=30.16 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=44.3
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
||||+.. +.-|.++++++|+...|.. .+.. . +.+++. ..-+.+......++
T Consensus 1 ~v~i~~~-~~~~~~~~~~~gf~~~L~~-~g~~-------------~-~~~~~~-------------~~~a~~d~~~~~~~ 51 (294)
T PF04392_consen 1 KVGILQF-ISHPALDDIVRGFKDGLKE-LGYD-------------E-KNVEIE-------------YKNAEGDPEKLRQI 51 (294)
T ss_dssp EEEEEES-S--HHHHHHHHHHHHHHHH-TT---------------C-CCEEEE-------------EEE-TT-HHHHHHH
T ss_pred CeEEEEE-eccHHHHHHHHHHHHHHHH-cCCc-------------c-ccEEEE-------------EecCCCCHHHHHHH
Confidence 6888886 4788999999999998864 2221 1 111110 11122223457788
Q ss_pred HHHHHHhCCcEEEEEcCCcchHH
Q 009444 226 VDNIEDRGINQVYIIGGDGTQKG 248 (534)
Q Consensus 226 v~~l~~~~Id~LvvIGGdgS~~~ 248 (534)
++.|...+.|.++.+|.+-+...
T Consensus 52 ~~~l~~~~~DlIi~~gt~aa~~~ 74 (294)
T PF04392_consen 52 ARKLKAQKPDLIIAIGTPAAQAL 74 (294)
T ss_dssp HHHHCCTS-SEEEEESHHHHHHH
T ss_pred HHHHhcCCCCEEEEeCcHHHHHH
Confidence 88899999998888876654443
No 140
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=46.23 E-value=39 Score=36.21 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH---------------cCCceeEeeeccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK---------------RGLQVAVAGIPKT 271 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~---------------~g~~i~vvgIPkT 271 (534)
+...++++.+++.++|.+|-|||--.+..|..++-.... ..-.+++|.||-|
T Consensus 74 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 74 EVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 356788999999999999999999999888765422110 0123688999987
No 141
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=46.12 E-value=30 Score=37.34 Aligned_cols=65 Identities=25% Similarity=0.379 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 221 DTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 221 d~~~iv~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
...++++.+.+++.+ .++.|||==....|..++-. ..+| +++|.||-| =+..+|.++|--|++|.
T Consensus 84 ~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 84 LVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC---chhhhCCCeeeeecccC
Confidence 357889999999998 99999998777777666543 3345 679999999 23556767766666554
No 142
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=45.69 E-value=2.8e+02 Score=26.57 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=47.4
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHHH
Q 009444 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (534)
Q Consensus 147 iaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv 226 (534)
|||+...-..|-.+..+.++-+.+.. ++ .++. ++-+.+......+.+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NG-YQML-------------------------------LMNTNFSIEKEIEAL 48 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CC-CEEE-------------------------------EEeCCCCHHHHHHHH
Confidence 67777666677777777777666643 22 1221 111112222345667
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEe
Q 009444 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVA 266 (534)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vv 266 (534)
+.|...++|++++.+.+.+.. +.+.+.+.++++-++
T Consensus 49 ~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~ipvv~~ 84 (259)
T cd01542 49 ELLARQKVDGIILLATTITDE----HREAIKKLNVPVVVV 84 (259)
T ss_pred HHHHhcCCCEEEEeCCCCCHH----HHHHHhcCCCCEEEE
Confidence 778889999999998765422 223444456444333
No 143
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=45.58 E-value=3.4e+02 Score=27.42 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=47.1
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~ 223 (534)
..|||+...-..|=.+.++.++-..+.. ++ .+++ +-++.. .....
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~-~g-~~~~--------------------------------i~~~~~~~~~~~ 105 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATM-YK-YNII--------------------------------LSNSDEDPEKEV 105 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHHH
Confidence 4899998655556677777777666543 22 2221 111111 12234
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
++++.|...++|++++.+...+.. +.+.+.+.+ +|+|.+
T Consensus 106 ~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~~ 144 (329)
T TIGR01481 106 QVLNTLLSKQVDGIIFMGGTITEK----LREEFSRSP--VPVVLA 144 (329)
T ss_pred HHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhcC--CCEEEE
Confidence 567778889999999987543321 223344445 455544
No 144
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.55 E-value=36 Score=36.43 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH------------------cCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------------------RGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~------------------~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.++|.++-|||--.+..|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 70 TTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 457888999999999999999999999998877543210 01246789999764
No 145
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=45.24 E-value=55 Score=35.05 Aligned_cols=135 Identities=10% Similarity=0.051 Sum_probs=66.7
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccC---CcccCCHHHHhhHhhcCCcceeecC-CCch
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK---NTLTLSPKVVNDIHKRGGTILRTSR-GGHD 221 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~---~~~~L~~~~V~~i~~~GGs~LGTsR-~~~d 221 (534)
||.| .+||...=+..+ ++++.+.......+++|+-++ .+-.. ...++....+.++.. .|..-+ -..-
T Consensus 7 ki~i-~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~v~G~~~----~l~~~~~~~~~ 77 (385)
T TIGR00215 7 TIAL-VAGEASGDILGA--GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELSVMGLRE----VLGRLGRLLKI 77 (385)
T ss_pred eEEE-EeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhhhccHHH----HHHHHHHHHHH
Confidence 4433 334444436666 666666654444577886542 11111 123344434444321 121111 0123
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~ 301 (534)
+.++.+.+++.+.|.++.+||-+ +.- .++..++..|+++ ++.||-.+ |-. . .-+.+.....+|.+..
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~-~~~--~~a~aa~~~gip~-v~~i~P~~-waw-------~-~~~~r~l~~~~d~v~~ 144 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPD-FNL--TKELKKKDPGIKI-IYYISPQV-WAW-------R-KWRAKKIEKATDFLLA 144 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC-ccH--HHHHHHhhCCCCE-EEEeCCcH-hhc-------C-cchHHHHHHHHhHhhc
Confidence 56888899999999999999844 221 2333334446553 33343322 111 1 1125666666776554
Q ss_pred h
Q 009444 302 E 302 (534)
Q Consensus 302 ~ 302 (534)
.
T Consensus 145 ~ 145 (385)
T TIGR00215 145 I 145 (385)
T ss_pred c
Confidence 3
No 146
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=44.59 E-value=38 Score=35.73 Aligned_cols=48 Identities=10% Similarity=0.269 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
...+++++..++.+.|.++-|||--.+..|..++-.. .+++|.||-|-
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~-----~~p~i~VPTt~ 112 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL-----GKPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc-----CCCEEEecCcc
Confidence 3567888889999999999999999999888876532 46899999874
No 147
>CHL00101 trpG anthranilate synthase component 2
Probab=44.31 E-value=41 Score=32.45 Aligned_cols=49 Identities=14% Similarity=0.324 Sum_probs=31.4
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
+.+.++|+|++.||.|+........+-++....++|+.|| |+|++--..
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI-------------ClG~Qlla~ 87 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV-------------CLGHQSIGY 87 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE-------------chhHHHHHH
Confidence 4567899999999999875532211111112335678887 999875544
No 148
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=43.81 E-value=2.7e+02 Score=25.81 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccC---ccccCCCCChhhHHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND---IAVIDKSFGFDTAVEEAQRAI 296 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDND---I~gtD~S~GFdTAv~~~~~ai 296 (534)
.+..++++.+...++++++..+.+..... +.+.+.+.+ +++|.+=.+.+.. -...-..+.+..+...+++.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 35667777788889999988877655433 334444445 5667664443321 111223444455555555544
Q ss_pred HHHHHhhhhcCCceEEEEecCCCcchHHHH----HhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhC--CcEEEEE
Q 009444 297 NAAHVEVESVENGVGIVKLMGRYSGFISMY----ATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVV 370 (534)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~----aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~--~~~vIVv 370 (534)
.... .+++.++=.-.. ....... .+++..+..+..+.+.+.+.+ ...+.+.+.+++. -.+|++.
T Consensus 120 ~~~~------~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~i~~~ 189 (269)
T cd01391 120 AEKG------WKRVALIYGDDG-AYGRERLEGFKAALKKAGIEVVAIEYGDLDTE---KGFQALLQLLKAAPKPDAIFAC 189 (269)
T ss_pred HHhC------CceEEEEecCCc-chhhHHHHHHHHHHHhcCcEEEeccccCCCcc---ccHHHHHHHHhcCCCCCEEEEc
Confidence 4332 346777743332 2222222 233332333333333333321 3455666666654 2455554
Q ss_pred eC
Q 009444 371 AE 372 (534)
Q Consensus 371 aE 372 (534)
+.
T Consensus 190 ~~ 191 (269)
T cd01391 190 ND 191 (269)
T ss_pred Cc
Confidence 43
No 149
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=43.65 E-value=3.6e+02 Score=27.22 Aligned_cols=67 Identities=9% Similarity=0.043 Sum_probs=41.5
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
..||++...-..|-.+.++.++.+.+.. ++ ..++-. -+........+
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~-~g-y~~~i~-------------------------------~~~~~~~~~~~ 107 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCRE-AG-YQLLIA-------------------------------CSDDNPDQEKV 107 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4899988655567777777777776643 22 232210 01111122346
Q ss_pred HHHHHHHhCCcEEEEEcCCc
Q 009444 225 IVDNIEDRGINQVYIIGGDG 244 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdg 244 (534)
.++.|..+++|++++.+.+.
T Consensus 108 ~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 108 VIENLLARQVDALIVASCMP 127 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCC
Confidence 77888899999999988654
No 150
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=43.62 E-value=1e+02 Score=31.34 Aligned_cols=86 Identities=20% Similarity=0.289 Sum_probs=50.5
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
..|+.++ ||. |+ ++..+++.+...| +.++.|.++||-. .+ -....++.|...+-.+|=.+=+.+.-|
T Consensus 105 ~~~v~ll--G~~-~~---v~~~a~~~l~~~y-~l~i~g~~~Gyf~---~~---e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 105 GTPVFLV--GGK-PE---VLAQTEAKLRTQW-NVNIVGSQDGYFT---PE---QRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred CCeEEEE--CCC-HH---HHHHHHHHHHHHh-CCEEEEEeCCCCC---HH---HHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 4577666 554 44 4445555555567 6799999999863 11 112356677777776654444433334
Q ss_pred HHHHH-HHHhCCcEEEEEcC
Q 009444 224 KIVDN-IEDRGINQVYIIGG 242 (534)
Q Consensus 224 ~iv~~-l~~~~Id~LvvIGG 242 (534)
..+.. .+..+...++.+||
T Consensus 172 ~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHhCCCCEEEEeCe
Confidence 44333 44456777788888
No 151
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=43.33 E-value=1.5e+02 Score=30.37 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=61.4
Q ss_pred CchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC---CchHHHHHHHHHHh
Q 009444 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (534)
Q Consensus 156 aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~ 232 (534)
+|....-.+.+++.+....+..++.-+...+. +. ..+.......+...|+.+.+..+. ..|+...+..++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WG---RTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--Hh---HHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 34444444556665543344456655553332 11 111112223345667888876654 35788999999999
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEee
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvg 267 (534)
+-|++++.|..+ .+..+.+.+++.|++.++++
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 221 (340)
T cd06349 190 NPDAIILISYYN---DGAPIARQARAVGLDIPVVA 221 (340)
T ss_pred CCCEEEEccccc---hHHHHHHHHHHcCCCCcEEc
Confidence 999988877443 33446677777888877664
No 152
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=43.19 E-value=46 Score=29.85 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=45.5
Q ss_pred CCHHHHhhHhhcCCcceeecC---C-Cc-hHHHHHHHHHHhCCcEEEEEcC-CcchHHHHHHHHHHHHcCCceeEeeecc
Q 009444 197 LSPKVVNDIHKRGGTILRTSR---G-GH-DTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (534)
Q Consensus 197 L~~~~V~~i~~~GGs~LGTsR---~-~~-d~~~iv~~l~~~~Id~LvvIGG-dgS~~~A~~L~e~~~~~g~~i~vvgIPk 270 (534)
+...++..|...|--+|-|.- . .+ ...+.++.|.+.++-+|.+--| +-. .--..+.+++.+++ +|++.+|.
T Consensus 31 ~e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 31 MEAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred eecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCCHHHHHHHHHcC--CCEEEeCC
Confidence 333467778544433443322 2 22 3789999999999999999555 333 33355567777666 56899986
No 153
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=42.91 E-value=61 Score=31.14 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=6.9
Q ss_pred ceeEeeecc
Q 009444 262 QVAVAGIPK 270 (534)
Q Consensus 262 ~i~vvgIPk 270 (534)
.+||||||-
T Consensus 80 ~lPViGVPv 88 (162)
T COG0041 80 PLPVIGVPV 88 (162)
T ss_pred CCCeEeccC
Confidence 578888884
No 154
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=42.91 E-value=44 Score=35.73 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 254 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e 254 (534)
+...++++.+++.+.|.++-|||--.+..|..++-
T Consensus 62 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~ 96 (374)
T cd08183 62 ELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAA 96 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHH
Confidence 35778899999999999999999999998877654
No 155
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=42.66 E-value=4.5e+02 Score=29.17 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=91.8
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
.+||--+ ||-==.||+++.+.+... +.-| .++-|.+.|+.. ||- |.=++.|+...
T Consensus 13 ~~Gi~SV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVdq~---GGY---TGmtP~dF~~~ 67 (421)
T PRK15052 13 HIGICSV---CSAHPLVIEAALAFDLNS--TRKV--------------LIEATSNQVNQF---GGY---TGMTPADFREF 67 (421)
T ss_pred CCceeeE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 4566655 454447899988766532 2222 366777777765 775 55566665444
Q ss_pred -HHHHHHhCCcE-EEEEcCCc-------------chHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 226 -VDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 226 -v~~l~~~~Id~-LvvIGGdg-------------S~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
.+.-++.+++. .+++|||- +|..|..+.+...+.|+. -|+|=.|++ ..+-..-+.-+|-++
T Consensus 68 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA~ 143 (421)
T PRK15052 68 VYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CADDPIPLAPETVAE 143 (421)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 44456779998 99999985 577777777777777986 588888877 222234566688899
Q ss_pred HHHHHHHHHHHhhhh--cCCceEEE
Q 009444 291 EAQRAINAAHVEVES--VENGVGIV 313 (534)
Q Consensus 291 ~~~~ai~~i~~~A~S--~~~rv~iV 313 (534)
.+++.|..+-.++.. ...-+++|
T Consensus 144 Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 144 RAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEe
Confidence 999888866655543 22346777
No 156
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=42.61 E-value=3.2e+02 Score=26.31 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPk 270 (534)
....+.+.+..+++|++++...+.... .+.+.+.+.+ ++||.+=.
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~--ipvv~i~~ 88 (270)
T cd01545 44 LAERVRALLQRSRVDGVILTPPLSDNP---ELLDLLDEAG--VPYVRIAP 88 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcc---HHHHHHHhcC--CCEEEEec
Confidence 345677788889999999998874322 2223344445 45665533
No 157
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=42.21 E-value=3.4e+02 Score=26.53 Aligned_cols=42 Identities=7% Similarity=0.027 Sum_probs=25.4
Q ss_pred hHHHHHH-HHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEe
Q 009444 221 DTNKIVD-NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVA 266 (534)
Q Consensus 221 d~~~iv~-~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vv 266 (534)
+..+.+. .+..+++|++++.+.+-... ..+.+.+.++++.++
T Consensus 42 ~~~~~~~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~iPvv~~ 84 (269)
T cd06297 42 RLKRYLESTTLAYLTDGLLLASYDLTER----LAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCccChH----HHHHHhhcCCCEEEE
Confidence 3445554 58889999999998764422 234444556544333
No 158
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=41.87 E-value=1.5e+02 Score=32.63 Aligned_cols=103 Identities=7% Similarity=0.022 Sum_probs=54.5
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC
Q 009444 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 140 f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
++.-+.|||||||- ..+++.++++.+- ..++..+++-+.- .-+|-. ..
T Consensus 125 lP~~p~~i~vits~-~~aa~~D~~~~~~----~r~p~~~~~~~~~---------------------~vQG~~------a~ 172 (432)
T TIGR00237 125 LPHFPKRVGVITSQ-TGAALADILHILK----RRDPSLKVVIYPT---------------------LVQGEG------AV 172 (432)
T ss_pred CCCCCCEEEEEeCC-ccHHHHHHHHHHH----hhCCCceEEEecc---------------------cccCcc------HH
Confidence 34456799999973 4555666655543 3455445552111 012210 01
Q ss_pred chHHHHHHHHHHh-CCcEEEEEcCCcchHHHHHHHHHHHH---cCCceeEe-eecccccc
Q 009444 220 HDTNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEK---RGLQVAVA-GIPKTIDN 274 (534)
Q Consensus 220 ~d~~~iv~~l~~~-~Id~LvvIGGdgS~~~A~~L~e~~~~---~g~~i~vv-gIPkTIDN 274 (534)
..+-+.++.+... ++|.++++=|-||......+-+|... +.+++||| ||=--+|.
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ 232 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDF 232 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCc
Confidence 1223333333333 38999999999998876555444222 24566665 45444444
No 159
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=41.87 E-value=52 Score=35.02 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-----------------CCceeEeeeccccccC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-----------------GLQVAVAGIPKTIDND 275 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-----------------g~~i~vvgIPkTIDND 275 (534)
+..+++++.+++.+.|.+|-|||--.+..|..++-..... .-.+++|.||-|--.+
T Consensus 68 ~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtg 140 (370)
T cd08192 68 AAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTG 140 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchh
Confidence 3578899999999999999999999998887765433210 1136788898765443
No 160
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=41.74 E-value=59 Score=34.68 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHh---CCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEeeecccccc
Q 009444 220 HDTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDN 274 (534)
Q Consensus 220 ~d~~~iv~~l~~~---~Id~LvvIGGdgS~~~A~~L~e~~~~~-------------g~~i~vvgIPkTIDN 274 (534)
+..+++++.+++. ++|.++-|||--++..|..++-..... .-.+++|.||-|=-.
T Consensus 65 ~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGT 135 (347)
T cd08184 65 DQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGT 135 (347)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCcc
Confidence 3578888888888 999999999999999988776433211 112568888876443
No 161
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=41.15 E-value=1.9e+02 Score=24.07 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=47.5
Q ss_pred EEEccCCCCc-hhhHHHHHHHHHHHHhCCCcEE-EEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHH
Q 009444 148 CIVTCGGLCP-GINTVIREIVCGLSYMYGVDEI-LGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (534)
Q Consensus 148 aIvtsGG~aP-GmNavIr~iv~~~~~~~~~~~V-~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (534)
.++.-|.+-| ..|..++.+.+.+....+...+ +|+... ..++++.+
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 4455678887 8999999998887654432222 222221 34567888
Q ss_pred HHHHHHhCCcEEEEE-----cCCcch-HHHHHHHHHH
Q 009444 226 VDNIEDRGINQVYII-----GGDGTQ-KGAALIYKEV 256 (534)
Q Consensus 226 v~~l~~~~Id~LvvI-----GGdgS~-~~A~~L~e~~ 256 (534)
++.|++.|++.++++ -|..+. .-...+.+..
T Consensus 51 l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 51 IRELAEEGYQRVVIVPLAPVSGDEVFYDIDSEIGLVR 87 (101)
T ss_pred HHHHHHcCCCeEEEEeCccccChhhHHHHHHHHHHHH
Confidence 888888888887664 355554 3333444333
No 162
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=41.10 E-value=2e+02 Score=31.38 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=60.9
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC
Q 009444 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 140 f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
.+.-+.|||||||- ..+|+.++++.+- ..++..+++-+.==+ +|= ...
T Consensus 131 lP~~p~~I~viTs~-~gAa~~D~~~~~~----~r~p~~~~~~~~~~v---------------------QG~------~A~ 178 (438)
T PRK00286 131 LPFFPKRIGVITSP-TGAAIRDILTVLR----RRFPLVEVIIYPTLV---------------------QGE------GAA 178 (438)
T ss_pred CCCCCCEEEEEeCC-ccHHHHHHHHHHH----hcCCCCeEEEecCcC---------------------cCc------cHH
Confidence 33446799999973 3555666665553 345544555322111 110 001
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHH-----HHHHHHcCCceeEe-eeccccccCc--cccCCCCChhhHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALI-----YKEVEKRGLQVAVA-GIPKTIDNDI--AVIDKSFGFDTAVEE 291 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L-----~e~~~~~g~~i~vv-gIPkTIDNDI--~gtD~S~GFdTAv~~ 291 (534)
.++-+.++.+...++|.++++=|-||...-..+ ++.+. ..++||| ||=--+|.=| .--|...--.||+-+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~--~~~~Pvis~IGHE~D~tl~D~vAd~ra~TPtaaae 256 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIA--ASRIPVISAVGHETDFTIADFVADLRAPTPTAAAE 256 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHH--cCCCCEEEeccCCCCccHHHHhhhccCCChHHHHH
Confidence 122233333344446999999999998876443 34343 3455554 5555555443 122444444555433
No 163
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=40.64 E-value=45 Score=35.07 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccC
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDND 275 (534)
..+++++.+++ +.|.++-|||--.+..|..++ +. ++ +++|.||-|..+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~g--ip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--VG--KPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--cC--CCEEEeCCCcccC
Confidence 46778888888 999999999998888888776 32 34 6799999998664
No 164
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=40.61 E-value=26 Score=31.43 Aligned_cols=42 Identities=36% Similarity=0.494 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCc---eeEeeeccccccCcc
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQ---VAVAGIPKTIDNDIA 277 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~---i~vvgIPkTIDNDI~ 277 (534)
..+.++++|||||...+.. .+.+...+ +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999887642 22222322 678889987788884
No 165
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.60 E-value=1.8e+02 Score=26.84 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=59.2
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHh-hHhhcCCcceeecC-C---
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVN-DIHKRGGTILRTSR-G--- 218 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~-~i~~~GGs~LGTsR-~--- 218 (534)
+.||.+.+.||+.=.+..-+-+.. .+..+ .+|+ |.| ..+..+++- ......-.+++-|- .
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~---lr~~G-~eVi-----~LG------~~vp~e~i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA---LTEAG-FEVI-----NLG------VMTSQEEFIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH---HHHCC-CEEE-----ECC------CCCCHHHHHHHHHHcCCCEEEEcCccccC
Confidence 457888888888766655443332 22233 4554 122 224444433 34444445655543 2
Q ss_pred CchHHHHHHHHHHhCC-cEEEEEcCCcchHH--HHHHHHHHHHcCC
Q 009444 219 GHDTNKIVDNIEDRGI-NQVYIIGGDGTQKG--AALIYKEVEKRGL 261 (534)
Q Consensus 219 ~~d~~~iv~~l~~~~I-d~LvvIGGdgS~~~--A~~L~e~~~~~g~ 261 (534)
.....++++.|++.+. +..+++||.-+... .....+.+++.|+
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~ 113 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF 113 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC
Confidence 2467888999999977 67789999764321 3444556666664
No 166
>PLN02335 anthranilate synthase
Probab=40.05 E-value=46 Score=33.12 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=33.2
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhh
Q 009444 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (534)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT 287 (534)
+..++.++||+-||-++-.......+.+++.+-++||.|| |+||+-
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~Ql 103 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQC 103 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHHH
Confidence 4567899999999999876543333444445556788888 999983
No 167
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.64 E-value=1.8e+02 Score=27.62 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=45.6
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
..+|.++ ||. |+ ++..+...+...|++.+|.|.++||- + .+-....++.|...+-.+|=.+-+.+.-+
T Consensus 48 ~~~ifll--G~~-~~---~~~~~~~~l~~~yP~l~ivg~~~g~f---~---~~~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 48 GKRIFLL--GGS-EE---VLEKAAANLRRRYPGLRIVGYHHGYF---D---EEEEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred CCeEEEE--eCC-HH---HHHHHHHHHHHHCCCeEEEEecCCCC---C---hhhHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 3455555 444 44 44444555666799999999999986 1 11122344555555555544444433334
Q ss_pred HHHHH-HHHhCCcEEEEEcC
Q 009444 224 KIVDN-IEDRGINQVYIIGG 242 (534)
Q Consensus 224 ~iv~~-l~~~~Id~LvvIGG 242 (534)
..+.. .++.+....+.+||
T Consensus 116 ~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 116 RWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred HHHHHHHHHCCCCEEEEECc
Confidence 43333 33334444444444
No 168
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=39.35 E-value=59 Score=35.37 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 254 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e 254 (534)
..++.++.+++.+.|.+|-+||--++..|..++-
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~ 107 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIAL 107 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 4688899999999999999999999988877653
No 169
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=39.03 E-value=54 Score=35.15 Aligned_cols=204 Identities=14% Similarity=0.206 Sum_probs=102.7
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCc---ccCCHHHHhhHhhcCC-cceeecC
Q 009444 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT---LTLSPKVVNDIHKRGG-TILRTSR 217 (534)
Q Consensus 142 ~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~---~~L~~~~V~~i~~~GG-s~LGTsR 217 (534)
....||.|+=+|| |.|++|..+.+... .+-+.+.+.-..++|-.... +.+......+. .-|+ -.+|-.-
T Consensus 9 ~~~~~I~VIGvGg---~G~n~v~~m~~~~~---~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~Gl-GaGa~P~vG~~a 81 (338)
T COG0206 9 SLKARIKVIGVGG---AGGNAVNRMIEEGV---EGVEFIAINTDAQALKSSKADRKILIGESITRGL-GAGANPEVGRAA 81 (338)
T ss_pred ccCceEEEEEeCC---cchHHHHHHHHhhh---CceEEEEeccCHHHHhccccCeEEEeccceeecc-CCCCCcHHHHHH
Confidence 4567999999998 56777777766443 33588888888888864331 11111111100 0000 0111000
Q ss_pred CCchHHHHHHHHHHhCCcEEEEEcCCcc--hH-HHHHHHHHHHHcCCc-eeEeeeccccccCccccCCCCChh--hHHHH
Q 009444 218 GGHDTNKIVDNIEDRGINQVYIIGGDGT--QK-GAALIYKEVEKRGLQ-VAVAGIPKTIDNDIAVIDKSFGFD--TAVEE 291 (534)
Q Consensus 218 ~~~d~~~iv~~l~~~~Id~LvvIGGdgS--~~-~A~~L~e~~~~~g~~-i~vvgIPkTIDNDI~gtD~S~GFd--TAv~~ 291 (534)
..++.++|.+.|+. .|++|++=|.|- =+ +|-.+++.++++|.- +.|+..|- -|. .-.+.
T Consensus 82 Aee~~~~I~~~l~g--~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf-------------~~EG~~r~~~ 146 (338)
T COG0206 82 AEESIEEIEEALKG--ADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPF-------------SFEGSPRMEN 146 (338)
T ss_pred HHHHHHHHHHHhcc--CCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecc-------------hhcCchHHHH
Confidence 12356677777654 567887755543 23 355778888776643 44555542 233 34556
Q ss_pred HHHHHHHHHHhhhhcC--CceEEEEecCCCcchHHHHHhh-------hcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh
Q 009444 292 AQRAINAAHVEVESVE--NGVGIVKLMGRYSGFISMYATL-------ASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE 362 (534)
Q Consensus 292 ~~~ai~~i~~~A~S~~--~rv~iVEvMGR~sG~LAl~aaL-------As~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~ 362 (534)
+.+.|..++..+-+.- ...-+.|......-|-|...+. .. =.|++..|- -.++ .++.++.-++.
T Consensus 147 A~~gi~~L~~~~DtlIvi~Ndkll~~~~~~~~~~Af~~ad~vl~~~v~~-i~e~I~~~g-linv-----DfaDv~~vm~~ 219 (338)
T COG0206 147 AEEGIEELREVVDTLIVIPNDKLLKGKDKTPIAEAFNEADDVLGNAVKG-ITELITKPG-LVNV-----DFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHhCCcEEEEecHHHHhccCcccHHHHHHHHHHHHHHHHHH-HHHHhccCc-eEee-----cHHHHHHHHhc
Confidence 6677777776554420 0122344555333333332221 11 123444441 1111 23445555666
Q ss_pred CCcEEEEEeCCC
Q 009444 363 NGHMVIVVAEGA 374 (534)
Q Consensus 363 ~~~~vIVvaEGa 374 (534)
.|.+.+-+.+..
T Consensus 220 ~G~A~mG~g~~~ 231 (338)
T COG0206 220 GGFALMGIGRAS 231 (338)
T ss_pred CCceeEEEeecc
Confidence 666666555554
No 170
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.89 E-value=58 Score=34.90 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEeeeccccccC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDND 275 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-------------~g~~i~vvgIPkTIDND 275 (534)
...+++++.++..+.|.++-|||--.+..|..++-.... ....+++|.||-|--.+
T Consensus 73 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTG 141 (382)
T cd08187 73 ETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATG 141 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchh
Confidence 457888999999999999999999888888776442111 01246889999765443
No 171
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=38.80 E-value=64 Score=34.29 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHhC--CcEEEEEcCCcchHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRG--INQVYIIGGDGTQKGAALIYK 254 (534)
Q Consensus 220 ~d~~~iv~~l~~~~--Id~LvvIGGdgS~~~A~~L~e 254 (534)
+..+++++.+++.+ .|.++-|||--.+..|..++-
T Consensus 65 ~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~ 101 (355)
T TIGR03405 65 AQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAV 101 (355)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Confidence 35678888888887 999999999999988876643
No 172
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.70 E-value=4.9e+02 Score=27.34 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=95.9
Q ss_pred EEccCCCCchhh-HHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCC-cceeecCC-----Cch
Q 009444 149 IVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRG-----GHD 221 (534)
Q Consensus 149 IvtsGG~aPGmN-avIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GG-s~LGTsR~-----~~d 221 (534)
|+.+||+.=-++ .-+..+++.+.. .+..+. ++-|-+..+. +...++.+.+..+...|= ..+++.-. .+.
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~-i~~v~~--iri~Tr~~v~-~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAA-IDHVKI--VRFHTRVPVA-DPARVTPALIAALKTSGKTVYVALHANHARELTAE 215 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHh-CCCccE--EEEeCCCccc-ChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHH
Confidence 677888876553 568888887764 332222 3334444322 223467777777766652 23544322 235
Q ss_pred HHHHHHHHHHhCCcEEE---EE-cCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVY---II-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~Lv---vI-GGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 297 (534)
..+.++.|++.||..+. ++ |=|++......|.+.+.+.|+..-.+.... .++|+ --|.+..+.+.+.+.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~----p~~g~---~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLD----LAPGT---AHFRVTIEEGQALVR 288 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecC----CCCCc---ccccCcHHHHHHHHH
Confidence 67888999999997643 44 556677777788888777775422222221 22332 355677777888888
Q ss_pred HHHHhhhhcCCceEEEEecCCC
Q 009444 298 AAHVEVESVENGVGIVKLMGRY 319 (534)
Q Consensus 298 ~i~~~A~S~~~rv~iVEvMGR~ 319 (534)
.++...++.-.--+++|..|+.
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHhCCCCcceeEEEeCCCCC
Confidence 7776555533335888888754
No 173
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=38.57 E-value=4.6e+02 Score=27.00 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=52.5
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCch
Q 009444 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (534)
Q Consensus 142 ~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d 221 (534)
.++.+||++...-.-|..+.++.++.+.+.. +++..++ +.++....+
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~ 68 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQLL--------------------------------MNDSQNDQS 68 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHH
Confidence 4456788887655667777777777776653 2221221 112222222
Q ss_pred -HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 -TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 -~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
..+.++.|...++|++++.+.+..... ..+ +.+++.+++ ||.+
T Consensus 69 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~giP--vV~v 112 (330)
T PRK15395 69 KQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQDVP--VVFF 112 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCCCc--EEEE
Confidence 335677889999999999987754322 223 444455654 5554
No 174
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=37.67 E-value=73 Score=34.11 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------CC------ceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------GL------QVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-------g~------~i~vvgIPkTI 272 (534)
....++++.+++.+.|.++-|||--.+..|..++-..... +. .+++|.||-|-
T Consensus 72 ~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 72 EEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 3467788889999999999999999999887664322111 11 35789998765
No 175
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=37.39 E-value=2e+02 Score=29.56 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=40.4
Q ss_pred CCceEEEEecCCCcchHHHHHhhhcCCC---cEEecCCCCCCCCChhhHHHHHHHHHHhC--CcEEEEEeCCC
Q 009444 307 ENGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVVAEGA 374 (534)
Q Consensus 307 ~~rv~iVEvMGR~sG~LAl~aaLAs~~a---d~ilIPE~pf~le~~~~l~e~I~~rl~~~--~~~vIVvaEGa 374 (534)
+..+.++|+ ..||+...||+-...+ .++|+|+.|- .-.+.|++++++. .+.-|+++.-.
T Consensus 88 ~~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd------~sA~~ir~~l~~~~g~~v~VIItDt~ 151 (243)
T TIGR01916 88 GTPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD------ASAEKIRRGLRELTGVDVGVIITDTN 151 (243)
T ss_pred cCCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH------HHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 356788886 5789988888764333 3789998874 5778888888763 34446666543
No 176
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=37.37 E-value=60 Score=31.11 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=36.5
Q ss_pred ceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
+.+--|+++.+.+++++.++.+++.++.+.|-...-. -.++- ....||||||-..
T Consensus 32 V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-gvva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 32 VVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-GMVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred EECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-HHHHh-----ccCCCEEEecCCc
Confidence 3444577788899999999999987777666533221 11221 3467899999743
No 177
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=37.27 E-value=3.8e+02 Score=25.66 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=63.1
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHHH
Q 009444 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (534)
Q Consensus 147 iaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv 226 (534)
||++...-+.|-.+.++.++.+.+.. ++ ..+.-+. +..........+
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRA-HG-YQVLVCN-------------------------------SDNDPEKEKEYL 48 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEEEc-------------------------------CCCCHHHHHHHH
Confidence 56666555677788888888777653 23 2222100 011112234667
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChhhHHHHHHHHHHHHHHhhhh
Q 009444 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHVEVES 305 (534)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~~A~S 305 (534)
+.+...++|++++.+.+..-. .+ +.+.+.+ +++|.+ +.+++... .++|+|-- +....+.+.+... +
T Consensus 49 ~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~~~v~~d~~-~~g~~~~~~l~~~--g 115 (267)
T cd06283 49 ESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGVDTVTLDNY-EAAKEAVDHLIEK--G 115 (267)
T ss_pred HHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCCCEEEeccH-HHHHHHHHHHHHc--C
Confidence 778889999999998765432 13 3344445 556654 44443322 24555431 1223333444322 3
Q ss_pred cCCceEEE
Q 009444 306 VENGVGIV 313 (534)
Q Consensus 306 ~~~rv~iV 313 (534)
+ ++|.++
T Consensus 116 ~-~~i~~l 122 (267)
T cd06283 116 Y-ERILFV 122 (267)
T ss_pred C-CcEEEE
Confidence 3 467766
No 178
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.09 E-value=3e+02 Score=25.26 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=51.4
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCH-HHHhhHhhcCCcceeecCCC---
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSP-KVVNDIHKRGGTILRTSRGG--- 219 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~-~~V~~i~~~GGs~LGTsR~~--- 219 (534)
+.||-+-+.|||.= ..=..++...... .+.+|+ ..+-. .++ +.++.....+..++|-|-..
T Consensus 2 ~~~v~~a~~g~D~H---d~g~~iv~~~l~~-~GfeVi---------~lg~~--~s~e~~v~aa~e~~adii~iSsl~~~~ 66 (132)
T TIGR00640 2 RPRILVAKMGQDGH---DRGAKVIATAYAD-LGFDVD---------VGPLF--QTPEEIARQAVEADVHVVGVSSLAGGH 66 (132)
T ss_pred CCEEEEEeeCCCcc---HHHHHHHHHHHHh-CCcEEE---------ECCCC--CCHHHHHHHHHHcCCCEEEEcCchhhh
Confidence 45888888988653 2222333333222 334554 11111 222 35667777777777765532
Q ss_pred -chHHHHHHHHHHhCC-cEEEEEcCCcc
Q 009444 220 -HDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (534)
Q Consensus 220 -~d~~~iv~~l~~~~I-d~LvvIGGdgS 245 (534)
+.+.++++.|++.+. +..+++||.=.
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 357888888988877 56788888654
No 179
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=36.99 E-value=32 Score=36.77 Aligned_cols=68 Identities=25% Similarity=0.275 Sum_probs=44.9
Q ss_pred ccCCHHHHhhHhhcCCcceeecCCC-----chHHHHHHHHHHhCC-----------------cEEEEEcCCcchHHHHH-
Q 009444 195 LTLSPKVVNDIHKRGGTILRTSRGG-----HDTNKIVDNIEDRGI-----------------NQVYIIGGDGTQKGAAL- 251 (534)
Q Consensus 195 ~~L~~~~V~~i~~~GGs~LGTsR~~-----~d~~~iv~~l~~~~I-----------------d~LvvIGGdgS~~~A~~- 251 (534)
-.|+++.+..+...-||-.|--=.. .-...+++.|.+-+| |++|-+||||||-.|+-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasr 124 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASR 124 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhh
Confidence 4688888888777666644321111 124566777776665 78999999999866543
Q ss_pred HHHHHHHcCCceeEeee
Q 009444 252 IYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 252 L~e~~~~~g~~i~vvgI 268 (534)
+.+ -..|||||
T Consensus 125 v~~------~~~PViGv 135 (395)
T KOG4180|consen 125 VID------DSKPVIGV 135 (395)
T ss_pred hhc------cCCceeee
Confidence 433 24689998
No 180
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=36.80 E-value=54 Score=29.66 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeec
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIP 269 (534)
.+++...++++|.++++.||+-+..+.. .++++|.++.+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i~---~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLVE---RLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHHH---HHHHcCCEEEEEccC
Confidence 3455556668999999999998877653 445568888777776
No 181
>PLN02204 diacylglycerol kinase
Probab=36.75 E-value=60 Score=37.41 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=44.5
Q ss_pred cEEEEEcccccccccCCcccCCHHHHhhHhhcCC---cceeecCCCchHHHHHHH---HHHhCCcEEEEEcCCcchHHHH
Q 009444 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG---TILRTSRGGHDTNKIVDN---IEDRGINQVYIIGGDGTQKGAA 250 (534)
Q Consensus 177 ~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GG---s~LGTsR~~~d~~~iv~~---l~~~~Id~LvvIGGdgS~~~A~ 250 (534)
.+++-|.|=+.|= +.- .-.|+.|..+....| .++-|.|.++-. .+++. +...+.|++|++||||++..+.
T Consensus 160 k~llVivNP~sGk--g~~-~~~~~~V~p~f~~a~i~~~v~~T~~aghA~-d~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 160 KNLLVFVHPLSGK--GSG-SRTWETVSPIFIRAKVKTKVIVTERAGHAF-DVMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred ceEEEEECCCCCC--cch-HHHHHHHHHHHHHcCCeEEEEEecCcchHH-HHHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 4677777766663 221 124667887777766 356677764333 33333 3356789999999999987643
No 182
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=36.52 E-value=41 Score=29.94 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID 273 (534)
.+.+.+.+..++.++++-||+-+..+. +.++++|.++-+++.|...+
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s 132 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSAS 132 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCC
Confidence 333444445679999999999987754 44556788888888644433
No 183
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=36.23 E-value=70 Score=34.38 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEeeecccc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 272 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-------------g~~i~vvgIPkTI 272 (534)
+..+.++.+++.+.|.++-|||--.+..|..++-....- +-.+++|.||-|-
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 131 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTA 131 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence 456777888899999999999999999988876433210 1146788888764
No 184
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=35.81 E-value=4e+02 Score=25.54 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChh--hHHHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFD--TAVEEAQRAINA 298 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFd--TAv~~~~~ai~~ 298 (534)
..++++.+...++|++++++.+.+-. +.+++.+.+ +++|.+ |++.+... .++++| .+.+.+++.+..
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 45677778889999999998654432 233344445 556655 33332222 234443 455555444432
Q ss_pred HHHhhhhcCCceEEEE
Q 009444 299 AHVEVESVENGVGIVK 314 (534)
Q Consensus 299 i~~~A~S~~~rv~iVE 314 (534)
.++ ++|.++-
T Consensus 114 -----~g~-~~i~~l~ 123 (268)
T cd06298 114 -----NGH-KKIAFIS 123 (268)
T ss_pred -----cCC-ceEEEEe
Confidence 243 5677774
No 185
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=35.36 E-value=54 Score=34.58 Aligned_cols=45 Identities=7% Similarity=0.259 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
..+++++.+++ +.|.++-|||--.+..|..++.. + .+++|.||-|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~--~~p~i~IPTT 113 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---T--GIPYISVPTA 113 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 45677777777 99999999999999888887632 2 4679999998
No 186
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=35.09 E-value=70 Score=34.74 Aligned_cols=63 Identities=25% Similarity=0.395 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 222 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 222 ~~~iv~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
..++.+.+.+++.+ .++.|||--+...|..++- ...+| +++|.||-| =+..+|.+.|.-++++
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~-~~~rg--ip~I~IPTT---lla~vda~~g~~~~v~ 162 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAA-TAHRG--VRLIRIPTT---VLAQNDSGVGVKNGIN 162 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHH-HhcCC--CCEEEEcCC---CccccCCCccchhhee
Confidence 78899999999998 9999999888888776653 22345 679999999 2355566666544444
No 187
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=35.08 E-value=56 Score=34.68 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHhC---CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 220 HDTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 220 ~d~~~iv~~l~~~~---Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
+..+++++.+.+++ .|.++.|||--.+..|..++... .++ +++|.||-|. +..+|-+.|.-++++
T Consensus 67 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 67 ETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc---ccccccCccceEeEe
Confidence 34678888898877 89999999988888877766432 234 6799999983 245566777666655
No 188
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=34.84 E-value=80 Score=33.04 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHh-CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccc
Q 009444 220 HDTNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (534)
Q Consensus 220 ~d~~~iv~~l~~~-~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~g 278 (534)
...+++.+.+++. +.|.++-|||--.+..|..++. .++ +++|.||-|..+|-..
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~---~~~--~p~i~vPTt~~tgs~~ 115 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAF---LRG--IPLSVPTTNLNDDGIA 115 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHh---hcC--CCEEEecCccccCccc
Confidence 4567777777776 5999999999988888887765 234 6799999998776544
No 189
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=34.68 E-value=73 Score=34.67 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~ 253 (534)
+...++++.+++.++|.+|-|||--.+..|..++
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 67 ESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 4578899999999999999999999998887765
No 190
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.46 E-value=2.6e+02 Score=24.84 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHhhHhhcCCcceeecCCC----chHHHHHHHHHHhCC-cEEEEEcCCcchHHHHHHHHHHHHcCCc
Q 009444 201 VVNDIHKRGGTILRTSRGG----HDTNKIVDNIEDRGI-NQVYIIGGDGTQKGAALIYKEVEKRGLQ 262 (534)
Q Consensus 201 ~V~~i~~~GGs~LGTsR~~----~d~~~iv~~l~~~~I-d~LvvIGGdgS~~~A~~L~e~~~~~g~~ 262 (534)
.+..+...+-.+++-|-.. +...++++.|++.+. +..+++||...-.. .+.+.+.|++
T Consensus 42 ~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~----~~~~~~~G~d 104 (122)
T cd02071 42 IVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPED----YELLKEMGVA 104 (122)
T ss_pred HHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH----HHHHHHCCCC
Confidence 4455666666666665432 356788888888877 66788888765332 2333445653
No 191
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.04 E-value=4.4e+02 Score=25.46 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
...+.+.+...++|++++.+.+..- . .+.+.+.+ +++|.+
T Consensus 47 ~~~~~~~l~~~~vdgiii~~~~~~~-~----~~~l~~~~--ipvV~~ 86 (268)
T cd06277 47 EFELPSFLEDGKVDGIILLGGISTE-Y----IKEIKELG--IPFVLV 86 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCChH-H----HHHHhhcC--CCEEEE
Confidence 3456777888999999999865431 1 23344445 556644
No 192
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=33.96 E-value=74 Score=32.34 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=57.8
Q ss_pred EEEEEcccccccccCCcccCCHHHHhhHhhcCCc--ce-eecCC--CchHHHHHHHHHHhCCcEEEEEcCCcchH-----
Q 009444 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT--IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQK----- 247 (534)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs--~L-GTsR~--~~d~~~iv~~l~~~~Id~LvvIGGdgS~~----- 247 (534)
..+-|.+|-.| .....++.....+...+|- +. =|+|. ...++..+..+...||+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~ 105 (274)
T cd00537 30 DFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPG 105 (274)
T ss_pred CEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCC
Confidence 45556666555 2334566666677777762 21 14554 35688999999999999999999986543
Q ss_pred -------HHHHHHHHHHHc---CCceeEeeec
Q 009444 248 -------GAALIYKEVEKR---GLQVAVAGIP 269 (534)
Q Consensus 248 -------~A~~L~e~~~~~---g~~i~vvgIP 269 (534)
.|..|.+.+++. ++.+.+.+.|
T Consensus 106 ~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 106 AKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 367777777653 4555556555
No 193
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=33.85 E-value=3.3e+02 Score=28.66 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC---CchHHHHHHHHHHhCCcEEEEE
Q 009444 164 REIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYII 240 (534)
Q Consensus 164 r~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LvvI 240 (534)
+.+++++.+..+..++.-+...+. +. ..+.......+...|+.+.+..+. ..|+...+..++..+-|++++
T Consensus 149 ~~~~~~~~~~~~~k~va~i~~d~~--~g---~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~- 222 (369)
T PRK15404 149 PTAAKYILEKVKPKRIAVLHDKQQ--YG---EGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY- 222 (369)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCc--hh---HHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-
Confidence 344554443334456655554321 11 111112334567788888877665 368899999999999998765
Q ss_pred cCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 241 GGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 241 GGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
+|++. ..+. +.+.+++.|++.++++.
T Consensus 223 ~~~~~-~~~~-~~k~~~~~G~~~~~i~~ 248 (369)
T PRK15404 223 GGYHP-EMGQ-ILRQAREAGLKTQFMGP 248 (369)
T ss_pred CCCch-HHHH-HHHHHHHCCCCCeEEec
Confidence 45443 2333 45677778888776643
No 194
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.28 E-value=2.4e+02 Score=28.91 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
..++.++.+++.|+|++++. |=.+..+..+.+.++++|+..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 47899999999999999995 66788888889999999987644445543
No 195
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.80 E-value=64 Score=28.77 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+.++|++..++.++++ +.||-|.+.-...|++.+.+.|+ .++|-
T Consensus 61 l~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp TSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 57899999999997776 56999999999999999988775 46654
No 196
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=32.79 E-value=3.5e+02 Score=26.72 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=25.4
Q ss_pred hhcCCcceeecCCCchHHHHHHHHHH--hCCcEEEEEcCCcc
Q 009444 206 HKRGGTILRTSRGGHDTNKIVDNIED--RGINQVYIIGGDGT 245 (534)
Q Consensus 206 ~~~GGs~LGTsR~~~d~~~iv~~l~~--~~Id~LvvIGGdgS 245 (534)
...|||.|++. +.++++++.+.+ .+.+-++|.+|-+.
T Consensus 4 iK~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~~~ 42 (227)
T cd04234 4 QKFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAMGG 42 (227)
T ss_pred EEECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCCCc
Confidence 35788888653 345566655555 68999999977554
No 197
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.69 E-value=3.9e+02 Score=27.49 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=43.6
Q ss_pred hhHhhcCCcceeecCC---CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEee
Q 009444 203 NDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (534)
Q Consensus 203 ~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvg 267 (534)
..+...|+++..+.+. ..|+...+..|++.+-+.+++.+... .+..+.+.+++.|+++++++
T Consensus 160 ~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 160 AALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 3455668887776654 35788999999999999998887433 33345677777888766554
No 198
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=32.69 E-value=5.4e+02 Score=26.05 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=47.9
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
..||++...-.-|-...++.++-+.+.. ++ .+++-.. +.........
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 110 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDA-HG-YQTMLAH-------------------------------YGYKPEMEQE 110 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHH-CC-CEEEEec-------------------------------CCCCHHHHHH
Confidence 4789888655567777788888777653 23 2332110 0001111235
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.++.+...++|++++.+-+..- ...+.+.+.+ +|+|.+
T Consensus 111 ~~~~~~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~~ 148 (331)
T PRK14987 111 RLESMLSWNIDGLILTERTHTP----RTLKMIEVAG--IPVVEL 148 (331)
T ss_pred HHHHHHhcCCCEEEEcCCCCCH----HHHHHHHhCC--CCEEEE
Confidence 5677888999999998744332 1223344445 556654
No 199
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.48 E-value=5e+02 Score=25.63 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=44.2
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCccee-ecCCCchHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILR-TSRGGHDTNK 224 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LG-TsR~~~d~~~ 224 (534)
+||++...-..|....++.++...+.. ++ ..++ +. +........+
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-y~~~--------------------------------~~~~~~~~~~~~~ 47 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IG-WNLR--------------------------------ILDGRGSEAGQAA 47 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cC-cEEE--------------------------------EECCCCCHHHHHH
Confidence 688888777778888888888887753 22 2221 11 1112233457
Q ss_pred HHHHHHHhCCcEEEEEcCCc
Q 009444 225 IVDNIEDRGINQVYIIGGDG 244 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdg 244 (534)
+++.+..+++|++++.+.+.
T Consensus 48 ~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 48 ALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHcCCCEEEEcCCCH
Confidence 88889999999999998653
No 200
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.38 E-value=1.5e+02 Score=23.19 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
..+++++..++.|++++.+-- -+++.+...+.+.+++.|+++ +.|+-.++
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTD-h~~~~~~~~~~~~~~~~gi~~-i~G~E~~~ 65 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITD-HGNLFGAVEFYKAAKKAGIKP-IIGLEANI 65 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEee-CCcccCHHHHHHHHHHcCCeE-EEEEEEEe
Confidence 478999999999999876654 447888888888888888763 66765544
No 201
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=32.16 E-value=1.6e+02 Score=30.29 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=38.8
Q ss_pred CceEEEEecCCCcchHHHHHhhhcCCC---cEEecCCCCCCCCChhhHHHHHHHHHHhC--CcEEEEEeCCC
Q 009444 308 NGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVVAEGA 374 (534)
Q Consensus 308 ~rv~iVEvMGR~sG~LAl~aaLAs~~a---d~ilIPE~pf~le~~~~l~e~I~~rl~~~--~~~vIVvaEGa 374 (534)
+++.++|+ ..||+...||+-...+ .++|+||.|- .-.+.|++++++. .+.-|+++.-.
T Consensus 90 ~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd------~SA~~ir~~l~~~~g~~v~VIItDt~ 152 (245)
T PRK13293 90 APFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPD------ESAERIREGLEELTGKKVGVIITDTN 152 (245)
T ss_pred CCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHH------HHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 45667776 6799988888764333 3889999873 5667788777663 34446666654
No 202
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=32.08 E-value=3.6e+02 Score=27.11 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=58.4
Q ss_pred chhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHh-hHhhcCCcceeecCCC---chHHHHHHHHHHh
Q 009444 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVN-DIHKRGGTILRTSRGG---HDTNKIVDNIEDR 232 (534)
Q Consensus 157 PGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~-~i~~~GGs~LGTsR~~---~d~~~iv~~l~~~ 232 (534)
|.-....+.++..+...++..+|.-+.... .+-.-....+. .+...|.++.++...+ .|+...+..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~ 189 (334)
T cd06342 116 ARDDQQGPAAAKYAVETLKAKKVAIIDDKT------AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAA 189 (334)
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEEEeCCc------chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc
Confidence 334455666666554445555655544221 11111112232 3344677787776543 5788999999999
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEee
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvg 267 (534)
+.+.+++.| .+. .+..+.+.+++.|++.++++
T Consensus 190 ~~~~vi~~~-~~~--~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 190 NPDAVFFGG-YYP--EAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred CCCEEEEcC-cch--hHHHHHHHHHHcCCCCcEEe
Confidence 999887655 332 23346677777788765554
No 203
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=31.83 E-value=4.7e+02 Score=25.05 Aligned_cols=61 Identities=26% Similarity=0.509 Sum_probs=39.1
Q ss_pred HhhcCCcceeecCC---CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 205 i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
+...|+.+.+.... ..+....+..+++.+.+.+++.+..+ .+..+.+.+++.++++++++.
T Consensus 159 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 222 (298)
T cd06268 159 LKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGG---DAALFLKQAREAGLKVPIVGG 222 (298)
T ss_pred HHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEec
Confidence 44556666555333 24677888888888889888776542 333455666777877666654
No 204
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=31.82 E-value=66 Score=34.79 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI 279 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt 279 (534)
.+.++++..+.+.+.|.++=|||--++..|..++.. +++++|.||-+=++|=+.+
T Consensus 71 ~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 71 EEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCccccccccC
Confidence 568888888888899999999999999999888753 4578999999988885543
No 205
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=31.79 E-value=47 Score=26.31 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAA 250 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~ 250 (534)
..+.++.|++|+|| |+.||+-|+..|.
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 34678889999999 6999999876554
No 206
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=31.42 E-value=4.9e+02 Score=25.46 Aligned_cols=67 Identities=15% Similarity=0.303 Sum_probs=45.6
Q ss_pred EEEEEcccccccccC---------CcccCCHHHHhhHhhcCCc-ceeecCCC--chHHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 178 EILGIEGGYRGFYSK---------NTLTLSPKVVNDIHKRGGT-ILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 178 ~V~Gi~~G~~GL~~~---------~~~~L~~~~V~~i~~~GGs-~LGTsR~~--~d~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
.++|+-.|..=+++. ++=-++.+..+.+. ..|. ++--...+ -|++++++.+.+++.+-++++|+.|.
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~-~~~~~~~~~~~eKD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 98 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYK-KAGVKIIVFPPEKDTTDLELALKYALERGADEITILGATGG 98 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHH-HcCCceEEcCCCCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 688999998766543 34445555555454 3443 33222222 47999999999999999999999886
No 207
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=31.31 E-value=4.5e+02 Score=25.49 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecc
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPk 270 (534)
.+++.+.+...++|++++.+.+.... ..+++.+.+ |+||.+-.
T Consensus 53 ~~~~~~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~~~~ 95 (275)
T cd06295 53 RDWLARYLASGRADGVILIGQHDQDP----LPERLAETG--LPFVVWGR 95 (275)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEECC
Confidence 34566777788999999998765421 124444445 55665533
No 208
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=31.22 E-value=4.7e+02 Score=26.35 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=59.5
Q ss_pred CchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCc-ccCCHHHHhhHhhcCCcceeecCCC---chHHHHHHHHHH
Q 009444 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRGG---HDTNKIVDNIED 231 (534)
Q Consensus 156 aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR~~---~d~~~iv~~l~~ 231 (534)
+|.-....+.+++.+.. .+..++.-+..- ..+ ...-......+...|+.+....... .+....+..+++
T Consensus 117 ~~~~~~~~~~~~~~l~~-~g~~~v~~l~~~------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~ 189 (336)
T cd06326 117 RASYADEIAAIVRHLVT-LGLKRIAVFYQD------DAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAA 189 (336)
T ss_pred CCChHHHHHHHHHHHHH-hCCceEEEEEec------CcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh
Confidence 34455566777777654 344455444221 111 1111112344567777776654443 477788888888
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+.+++|+.+-.. .+..+.+.+++.|++++++++
T Consensus 190 ~~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~ 223 (336)
T cd06326 190 ARPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNL 223 (336)
T ss_pred cCCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEE
Confidence 8899888766332 233455667778988777765
No 209
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=31.20 E-value=2.4e+02 Score=27.23 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=49.0
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
.++.++ || .|+.+ ..+++.+...|++.+|.|. +||-. .+ -....++.|...+-.+|-.+-+.+.-|.
T Consensus 49 ~~vfll--G~-~~~v~---~~~~~~l~~~yP~l~i~g~-~g~f~---~~---~~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 49 LPIFLY--GG-KPDVL---QQLKVKLIKEYPKLKIVGA-FGPLE---PE---ERKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred CeEEEE--CC-CHHHH---HHHHHHHHHHCCCCEEEEE-CCCCC---hH---HHHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 466665 44 55543 3444445556899999987 66642 11 1233567777777777666655444455
Q ss_pred HHHHH-HHhCCcEEEEEcC
Q 009444 225 IVDNI-EDRGINQVYIIGG 242 (534)
Q Consensus 225 iv~~l-~~~~Id~LvvIGG 242 (534)
.+... +.++...++-+||
T Consensus 116 ~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHhHHhCCCcEEEEece
Confidence 54444 4445555566676
No 210
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.49 E-value=3.4e+02 Score=27.24 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=41.8
Q ss_pred HhhcCCcceeecCC---CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEee
Q 009444 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (534)
Q Consensus 205 i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvg 267 (534)
+...|++++.+... ..++...+..+++.+.+.+++.+..+. +..+.+++.+.|+++++++
T Consensus 160 ~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~---~~~~~~~~~~~g~~~~i~~ 222 (334)
T cd06347 160 FKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTE---VGLIAKQARELGIKVPILG 222 (334)
T ss_pred HHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhh---HHHHHHHHHHcCCCCcEEe
Confidence 34467788776543 357888899999999999888765543 3445566677788766665
No 211
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=30.12 E-value=69 Score=34.51 Aligned_cols=96 Identities=23% Similarity=0.442 Sum_probs=49.4
Q ss_pred CCeeEEEEccCCCCchhh-HHHHHHHHHHHHhC--------CCcEEEEEccccccccc-CC---cccCCHHHHhhHhhcC
Q 009444 143 DEVRACIVTCGGLCPGIN-TVIREIVCGLSYMY--------GVDEILGIEGGYRGFYS-KN---TLTLSPKVVNDIHKRG 209 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmN-avIr~iv~~~~~~~--------~~~~V~Gi~~G~~GL~~-~~---~~~L~~~~V~~i~~~G 209 (534)
++.|||+||+||..|--| .-|.+.-..-+..| ...+..-+|.||.--.- .+ +++|+ .+..+...|
T Consensus 226 s~akIALVTtGGivPkgnPD~i~ss~a~~~g~Y~I~~~~~l~~~~~~~~HgGYD~~~an~D~N~v~PlD--~LreL~~EG 303 (349)
T PF07355_consen 226 SKAKIALVTTGGIVPKGNPDRIESSSATKYGKYDISGMDDLSSDDYMTIHGGYDPAYANEDPNRVFPLD--RLRELEKEG 303 (349)
T ss_pred HHCEEEEEeccCcccCCCCCccCCCCCCCceeeeCcCcCCCCccceEeeccccChhHhccCCCeeeeHH--HHHHHHHcC
Confidence 457999999999999888 22222110000001 01234445666654432 11 22332 334444443
Q ss_pred --Cc----ceeec-----CC--CchHHHHHHHHHHhCCcEEEEE
Q 009444 210 --GT----ILRTS-----RG--GHDTNKIVDNIEDRGINQVYII 240 (534)
Q Consensus 210 --Gs----~LGTs-----R~--~~d~~~iv~~l~~~~Id~LvvI 240 (534)
|+ +.+|. .. ...-.+|++.|++-++|+++..
T Consensus 304 ~IG~l~~~~yst~G~gt~~~~~~~~g~eIa~~Lk~dgVDAVILT 347 (349)
T PF07355_consen 304 VIGSLAPYFYSTMGNGTAVANAKRFGPEIAKELKEDGVDAVILT 347 (349)
T ss_pred CcccccCeeEEcCCCCccHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 21 12221 11 1234789999999999998863
No 212
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=30.08 E-value=58 Score=31.28 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=32.1
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH
Q 009444 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (534)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (534)
+.+++++.|+||+-||-++-.-.......++....++||.|| |+|++.-.
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI-------------C~G~Qlla 86 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV-------------CLGHQALG 86 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE-------------CHHHHHHH
Confidence 335667899999999999864432222222222335778888 89987543
No 213
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=29.85 E-value=75 Score=30.15 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=29.0
Q ss_pred HhCCcEEEEEcCCcchHHHH---HHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 231 DRGINQVYIIGGDGTQKGAA---LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 231 ~~~Id~LvvIGGdgS~~~A~---~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
..++|++++-||.++..... .+.+.+. -++||.|| |+|++-....
T Consensus 40 ~~~~dgvil~gG~~~~~~~~~~~~i~~~~~---~~~PvlGI-------------C~G~Qlla~~ 87 (184)
T cd01743 40 LLNPDAIVISPGPGHPEDAGISLEIIRALA---GKVPILGV-------------CLGHQAIAEA 87 (184)
T ss_pred hcCCCEEEECCCCCCcccchhHHHHHHHHh---cCCCEEEE-------------CHhHHHHHHH
Confidence 35799999999999854432 2222221 24677877 9998865543
No 214
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=29.67 E-value=72 Score=30.63 Aligned_cols=44 Identities=14% Similarity=0.339 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (534)
..|+||+.||-++-.....+.+.+++..-++++.|| |+|++--.
T Consensus 43 ~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGI-------------ClG~Qlla 86 (190)
T PRK06895 43 NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGV-------------CLGHQTLC 86 (190)
T ss_pred cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEE-------------cHHHHHHH
Confidence 478999999999543333344444333335678888 99998433
No 215
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=29.58 E-value=5.2e+02 Score=24.89 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
...++++.|...++|++++.+.+..-.. + +.+.+.+ ++||.+
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~~~~---~-~~~~~~~--ipvV~~ 84 (264)
T cd06274 43 TERETVETLIARQVDALIVAGSLPPDDP---Y-YLCQKAG--LPVVAL 84 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCchHH---H-HHHHhcC--CCEEEe
Confidence 4567888899999999999987643221 2 2344445 456655
No 216
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.07 E-value=5.2e+02 Score=24.78 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+.+.+.+...++|++++.+.+..- .+.+.+.+++ ++||.+
T Consensus 49 ~~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~~--ipvV~~ 89 (270)
T cd06294 49 LEEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEEK--FPFVVI 89 (270)
T ss_pred HHHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhcC--CCEEEE
Confidence 3444555667789999999764432 1234444555 456644
No 217
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=29.02 E-value=71 Score=30.75 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=45.7
Q ss_pred cCCHHHHhhHhhcCCcceeecCCCc-hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccccc
Q 009444 196 TLSPKVVNDIHKRGGTILRTSRGGH-DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (534)
Q Consensus 196 ~L~~~~V~~i~~~GGs~LGTsR~~~-d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDN 274 (534)
..|+..++.+...| ..+-.-|..+ +. +.+++++.|+||+-||-|+-..+....+.+++..-++|+.||
T Consensus 10 sft~nl~~~l~~~g-~~v~v~~~~~~~~----~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI------ 78 (187)
T PRK08007 10 SFTWNLYQYFCELG-ADVLVKRNDALTL----ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV------ 78 (187)
T ss_pred ccHHHHHHHHHHCC-CcEEEEeCCCCCH----HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE------
Confidence 34555566666653 3333344432 22 345567899999999999876653333333333335778888
Q ss_pred CccccCCCCChhhHH
Q 009444 275 DIAVIDKSFGFDTAV 289 (534)
Q Consensus 275 DI~gtD~S~GFdTAv 289 (534)
|+|++.-+
T Consensus 79 -------ClG~Q~la 86 (187)
T PRK08007 79 -------CLGHQAMA 86 (187)
T ss_pred -------CHHHHHHH
Confidence 99987544
No 218
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=28.44 E-value=3.7e+02 Score=28.15 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHh--CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC
Q 009444 220 HDTNKIVDNIEDR--GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (534)
Q Consensus 220 ~d~~~iv~~l~~~--~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD 280 (534)
.++.++++.+++. +.+++||+-|-+||.-...+....- .+++.+||-.=.-.--+.+.+|
T Consensus 57 ~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l-~~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 57 EDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLL-DNLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHE-ES-SSEEEEE--SS-TTSTT-S
T ss_pred HHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHh-cCCCCCEEEeCCcCCCcCCCCc
Confidence 4555555444444 5999999999999988655544432 2445666654333333344444
No 219
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=28.29 E-value=61 Score=30.78 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=32.4
Q ss_pred eeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
++--|+.+.+.+.++++++.+++.+|.+-|-...-. -.++-. ...||||+|-.
T Consensus 35 ~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-gvva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 35 ASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALP-GVVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp --TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-HHHHHH-----SSS-EEEEEE-
T ss_pred EeccCCHHHHHHHHHHhccCCCEEEEEECCCcccch-hhheec-----cCCCEEEeecC
Confidence 334466777888888888888888887766644332 223321 35789999943
No 220
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=28.21 E-value=1.8e+02 Score=29.47 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=63.2
Q ss_pred cccccCccccCCCCChhhHHHHHHHHH-HHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC
Q 009444 270 KTIDNDIAVIDKSFGFDTAVEEAQRAI-NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG 348 (534)
Q Consensus 270 kTIDNDI~gtD~S~GFdTAv~~~~~ai-~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~ 348 (534)
.|+.-|+.+-....|..-+ + +.+.+ ..+.............-++-|+.-=-+|.++.||. +|++++.=|-.-.+|.
T Consensus 95 ~tV~~evafg~~n~g~~~~-e-~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~-~P~iliLDEPta~LD~ 171 (235)
T COG1122 95 PTVEDEVAFGLENLGLPRE-E-IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM-GPEILLLDEPTAGLDP 171 (235)
T ss_pred CcHHHHHhhchhhcCCCHH-H-HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc-CCCEEEEcCCCCCCCH
Confidence 5777788777778888765 2 22222 22333343433456777888888889999999999 8999998887666663
Q ss_pred --hhhHHHHHHHHHHhC-CcEEEEEe
Q 009444 349 --PGGLFEFIERQLKEN-GHMVIVVA 371 (534)
Q Consensus 349 --~~~l~e~I~~rl~~~-~~~vIVva 371 (534)
.+.+++.++ ++... +..+|++.
T Consensus 172 ~~~~~l~~~l~-~L~~~~~~tii~~t 196 (235)
T COG1122 172 KGRRELLELLK-KLKEEGGKTIIIVT 196 (235)
T ss_pred HHHHHHHHHHH-HHHhcCCCeEEEEe
Confidence 234445444 44444 45555543
No 221
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=28.10 E-value=4.3e+02 Score=27.04 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=45.1
Q ss_pred hhHhh--cCCcceeecCC---C-chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 203 NDIHK--RGGTILRTSRG---G-HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 203 ~~i~~--~GGs~LGTsR~---~-~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
..+.. .|+++++..+. . .|+...+..+++.+.|++++++..+ .+..+.+.+++.|++.++++.
T Consensus 165 ~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 233 (342)
T cd06329 165 AMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTP 233 (342)
T ss_pred HHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEec
Confidence 44555 78888877554 3 5778889999999999998877443 234566777788887766643
No 222
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.03 E-value=7.2e+02 Score=26.21 Aligned_cols=104 Identities=21% Similarity=0.191 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee-ccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
...++++.+++..=+..+++|.-.|...|..+.+ .|.+.-+|++ |.++...-........--|++..+.++++..
T Consensus 121 ~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~----aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~ 196 (325)
T cd00381 121 YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID----AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY 196 (325)
T ss_pred HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh----cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc
Confidence 4455666666654345666677777777776654 4766544433 5553221111111122224444444433211
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEec
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLI 339 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilI 339 (534)
.+-|| ..|+-.----...+|+. ||+.|.+
T Consensus 197 ---------~vpVI-A~GGI~~~~di~kAla~-GA~~Vmi 225 (325)
T cd00381 197 ---------GVPVI-ADGGIRTSGDIVKALAA-GADAVML 225 (325)
T ss_pred ---------CCcEE-ecCCCCCHHHHHHHHHc-CCCEEEe
Confidence 24444 45554433333455566 7998888
No 223
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.99 E-value=8.5e+02 Score=26.87 Aligned_cols=102 Identities=23% Similarity=0.266 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee-ccccccCccccCCCCCh--hhHHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGF--DTAVEEAQRAI 296 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI-PkTIDNDI~gtD~S~GF--dTAv~~~~~ai 296 (534)
....++++.+++.-=+.+++.|+-.|...|..+.+ .|.+.-.+|+ |.||.---..+ ..|. -||+..+.+++
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~----aGaD~I~vG~g~Gs~c~tr~~~--g~g~p~ltai~~v~~~~ 252 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS----VGADCLKVGIGPGSICTTRIVA--GVGVPQITAICDVYEVC 252 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH----cCCCEEEECCCCCcCCcceeec--CCCCChHHHHHHHHHHH
Confidence 45667777777643467788899999999888865 3777655675 66653221111 1233 34555555443
Q ss_pred HHHHHhhhhcCCceEEEEecCC--CcchHHHHHhhhcCCCcEEecC
Q 009444 297 NAAHVEVESVENGVGIVKLMGR--YSGFISMYATLASRDVDCCLIP 340 (534)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEvMGR--~sG~LAl~aaLAs~~ad~ilIP 340 (534)
+. . .+-|| ..|+ +.|.++- ||+. |||.|.+-
T Consensus 253 ~~-------~--~vpVI-AdGGI~~~~Di~K--ALal-GA~aVmvG 285 (404)
T PRK06843 253 KN-------T--NICII-ADGGIRFSGDVVK--AIAA-GADSVMIG 285 (404)
T ss_pred hh-------c--CCeEE-EeCCCCCHHHHHH--HHHc-CCCEEEEc
Confidence 31 1 23333 4554 5666654 4555 78877764
No 224
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.81 E-value=5.2e+02 Score=26.04 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=42.6
Q ss_pred hhHhhcCCcceeecCC---CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEee
Q 009444 203 NDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (534)
Q Consensus 203 ~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvg 267 (534)
..+...|+.+.+..+. ..|+...+..+++.+-|.+|+.+... .+..+.+.+++.|++.++++
T Consensus 159 ~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 159 KAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 4455678888876654 35788999999999999998775433 33334455566787655554
No 225
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=27.75 E-value=37 Score=38.71 Aligned_cols=146 Identities=17% Similarity=0.193 Sum_probs=82.8
Q ss_pred EEEEEcccccccccCCcccCCHHHHhhHhhcCCc---ceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHH-HHH
Q 009444 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT---ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIY 253 (534)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs---~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~-~L~ 253 (534)
+++-|.|=+-| ++.-.++=...|.-+....|. ++=|.|- ....+++.++.--+-|+++++||||.+.-+. =|.
T Consensus 181 ~lLV~iNP~gG--kGka~~~F~~~v~Pll~~A~i~~evv~T~~~-~HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl 257 (579)
T KOG1116|consen 181 RLLVFINPFGG--KGKAKKLFKNHVEPLLSEAGISFEVVLTTRP-NHAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLL 257 (579)
T ss_pred cEEEEECCCCC--CccHHHHHHhhhhhhhhhcCceEEEEEecCc-cHHHHHHHhhhccccceEEEecCCcCHHHhhhccc
Confidence 55555543333 122222222334444444442 3444442 4567888888888999999999999976542 222
Q ss_pred HHH-HHcCCceeEeeeccccccCcccc-CCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCC--cchHHHHHhh
Q 009444 254 KEV-EKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRY--SGFISMYATL 329 (534)
Q Consensus 254 e~~-~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~--sG~LAl~aaL 329 (534)
+.- -+...++++--||.==.|++..+ -.+-||+-+++.....| +.- .+.--++.||.+++. -+||.+.-+|
T Consensus 258 ~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~ii---rg~--~t~~dv~~v~~~~~~~~fSfLs~~wGl 332 (579)
T KOG1116|consen 258 ERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLII---RGR--LTPMDVSVVEYAGKDRHFSFLSAAWGL 332 (579)
T ss_pred cccchhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHH---ccC--CCchheeehhhccCcceEEEEeeeeee
Confidence 110 11245788999999999999654 35667642333222222 111 112248889988876 5666666665
Q ss_pred hc
Q 009444 330 AS 331 (534)
Q Consensus 330 As 331 (534)
-+
T Consensus 333 IA 334 (579)
T KOG1116|consen 333 IA 334 (579)
T ss_pred EE
Confidence 54
No 226
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=27.59 E-value=6.3e+02 Score=26.13 Aligned_cols=114 Identities=25% Similarity=0.203 Sum_probs=0.0
Q ss_pred ccccccCccccCCCC-Chhh-HHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCc-EEecCCCCCC
Q 009444 269 PKTIDNDIAVIDKSF-GFDT-AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD-CCLIPESPFY 345 (534)
Q Consensus 269 PkTIDNDI~gtD~S~-GFdT-Av~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad-~ilIPE~pf~ 345 (534)
|+|=..|..+.+.++ -||- |++++.+.-+. .+..=-+|=+||-...-=++.-+||- |+| .++|.-..|.
T Consensus 21 ~~~~~~~~~gv~~~in~~D~~AvEeAlrLke~-------~~~~eV~vlt~Gp~~a~~~lr~aLAm-GaDraili~d~~~~ 92 (260)
T COG2086 21 PDTGTLDRSGVPLSINPFDLNAVEEALRLKEK-------GYGGEVTVLTMGPPQAEEALREALAM-GADRAILITDRAFA 92 (260)
T ss_pred cCCCccccCCCCcccChhhHHHHHHHHHhhcc-------CCCceEEEEEecchhhHHHHHHHHhc-CCCeEEEEeccccc
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHH
Q 009444 346 LEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKI 408 (534)
Q Consensus 346 le~~~~l~e~I~~rl~~~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I 408 (534)
--.+..-...|.+.+++.+.-+|+..+.+.+.+. +-+|..|+..+
T Consensus 93 ~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t------------------~qvg~~lAe~L 137 (260)
T COG2086 93 GADPLATAKALAAAVKKIGPDLVLTGKQAIDGDT------------------GQVGPLLAELL 137 (260)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecccccCCc------------------cchHHHHHHHh
No 227
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=27.56 E-value=1.6e+02 Score=30.74 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCc-cccC---CCCChhhHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI-AVID---KSFGFDTAVEEAQRAI 296 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI-~gtD---~S~GFdTAv~~~~~ai 296 (534)
++++.+..|.+ .+|.++||||..| ....+|++-+++.+.+.-.|-=|.=|+.+. .+.+ -|=|-.|=-..+-+.+
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi 275 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVI 275 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHH
Confidence 46777777765 6999999999999 466789999888876544444444444222 1111 1334455444444444
Q ss_pred HHH
Q 009444 297 NAA 299 (534)
Q Consensus 297 ~~i 299 (534)
+.+
T Consensus 276 ~~l 278 (281)
T PF02401_consen 276 DRL 278 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 228
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.49 E-value=61 Score=36.71 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhC---CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 221 DTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 221 d~~~iv~~l~~~~---Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
..+++++.+.+.+ .|.++-|||=-.+..|..++... .+| +++|.||-|+ ++.+|-|+|.-|+++
T Consensus 254 ~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl---lA~vDss~ggkt~in 320 (542)
T PRK14021 254 VANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL---LAMVDASTGGKTGIN 320 (542)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH---HhhhccccCCceEEE
Confidence 3567778888884 89999999988888777765422 245 6799999986 355666667666554
No 229
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=27.28 E-value=4.3e+02 Score=24.70 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=71.3
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCccc-CCHHHHhhHhhcCCcceeecCC---CchH
Q 009444 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLT-LSPKVVNDIHKRGGTILRTSRG---GHDT 222 (534)
Q Consensus 147 iaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~-L~~~~V~~i~~~GGs~LGTsR~---~~d~ 222 (534)
|.+++-|||.. ...+..++.+...+.+|+.+...+.=++..-+.+ -.++....|...|| ||--. ....
T Consensus 3 VLL~n~G~P~~-----~~~v~~yL~~~~~d~~vi~~p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~---~SPL~~~t~~q~ 74 (159)
T cd03411 3 VLLVNLGGPES-----LEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKIGG---GSPLNEITRAQA 74 (159)
T ss_pred EEEEeCCCCCC-----HHHHHHHHHHHcCCCCcccCCHHHHHHHHHHhcccccHHHHHHHHHcCC---CCccHHHHHHHH
Confidence 56777899988 5555566666667778877765542222221222 23445567888886 33111 1234
Q ss_pred HHHHHHHHHhCCcEEEEEc---CCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHH
Q 009444 223 NKIVDNIEDRGINQVYIIG---GDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIG---GdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 297 (534)
+++.+.|++...+..+.+| |.-+. ....+++.+.|.+ .++.+|- .--..+....|+++.+.+++.
T Consensus 75 ~~l~~~L~~~~~~~~v~~amry~~P~i---~~~l~~l~~~g~~-~iivlPl------~P~~S~~Tt~s~~~~~~~~~~ 142 (159)
T cd03411 75 EALEKALDERGIDVKVYLAMRYGPPSI---EEALEELKADGVD-RIVVLPL------YPQYSASTTGSYLDEVERALK 142 (159)
T ss_pred HHHHHHHhccCCCcEEEehHhcCCCCH---HHHHHHHHHcCCC-EEEEEEC------CcccccccHHHHHHHHHHHHH
Confidence 5666666665444555554 22222 2233445566765 6788884 222334445556655555443
No 230
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.19 E-value=4.5e+02 Score=24.42 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=50.1
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHH-HHhhHhhcCCcceeec-CC---Cc
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK-VVNDIHKRGGTILRTS-RG---GH 220 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~-~V~~i~~~GGs~LGTs-R~---~~ 220 (534)
+|-+-+.|||.=-+..-+ +..+.+.+ +.+|+ +.| ...+++ .++.....+-.++|-| .. ..
T Consensus 3 ~vvigtv~~D~HdiGk~i---v~~~l~~~-GfeVi-----~LG------~~v~~e~~v~aa~~~~adiVglS~l~~~~~~ 67 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKI---LDHAFTNA-GFNVV-----NLG------VLSPQEEFIKAAIETKADAILVSSLYGHGEI 67 (134)
T ss_pred eEEEEEecCChhhHhHHH---HHHHHHHC-CCEEE-----ECC------CCCCHHHHHHHHHHcCCCEEEEecccccCHH
Confidence 677788888875544422 22222223 34565 222 223333 4555566666677643 32 24
Q ss_pred hHHHHHHHHHHhCC-cEEEEEcCCcc
Q 009444 221 DTNKIVDNIEDRGI-NQVYIIGGDGT 245 (534)
Q Consensus 221 d~~~iv~~l~~~~I-d~LvvIGGdgS 245 (534)
.+.++++.|++.++ +..+++||.-.
T Consensus 68 ~~~~~~~~l~~~gl~~~~vivGG~~v 93 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGILLYVGGNLV 93 (134)
T ss_pred HHHHHHHHHHHCCCCCCEEEecCCcC
Confidence 68899999999999 55677999754
No 231
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.95 E-value=3.4e+02 Score=26.37 Aligned_cols=90 Identities=12% Similarity=0.232 Sum_probs=65.4
Q ss_pred EEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHH-HHhhHhhcCCcceeecCCCchHHHHH
Q 009444 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK-VVNDIHKRGGTILRTSRGGHDTNKIV 226 (534)
Q Consensus 148 aIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~-~V~~i~~~GGs~LGTsR~~~d~~~iv 226 (534)
+|+..|-...++-..|+.+|+. |++. |-|.. .-+|. .+..|.. ||...--.-++.....+.
T Consensus 34 gil~~~e~De~v~esv~dVv~r----wGG~--F~v~~-----------~~nw~~~i~~wk~-gG~vvHLTMYG~~i~dv~ 95 (179)
T COG1303 34 GILLDGEEDEKVVESVEDVVER----WGGP--FFVKF-----------GVNWRKVIREWKE-GGIVVHLTMYGLNIDDVI 95 (179)
T ss_pred eEEEcCcccHHHHHHHHHHHHh----cCCC--EEEEE-----------cccHHHHHHHhhc-CCEEEEEEecCCcchhhh
Confidence 5677776678888888888863 6763 33332 24565 5678888 997766666666777888
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHH
Q 009444 227 DNIEDRGINQVYIIGGDGTQKGAALIYKE 255 (534)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~e~ 255 (534)
+.|++.+=+-|+++|+.---.-+..|+++
T Consensus 96 ~ei~~~~k~~lvvVGaeKVp~evYelADy 124 (179)
T COG1303 96 DEIRESKKDVLVVVGAEKVPGEVYELADY 124 (179)
T ss_pred HHHHhcCCcEEEEEccccCCHHHhhhccc
Confidence 88888888899999999888877777753
No 232
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=26.56 E-value=1.4e+02 Score=28.32 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHhCCcEEEEEcCCcchHH---HHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHH
Q 009444 229 IEDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (534)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~---A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~ 292 (534)
+...++|+|++-||.++... ...+.+++.+++ ++|.|| |.|++......
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI-------------C~G~Q~l~~~~ 86 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI-------------CLGHQLLALAL 86 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE-------------CHHHHHHHHHc
Confidence 34568999999999876433 333444444443 678888 88988665543
No 233
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=26.31 E-value=3.3e+02 Score=29.39 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee-ccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
..-.+++.+++.--+.-+|.|.-.|..+|..|.+ .|.+.--||| |.+|.-==--+-.-.+--||+..++++..
T Consensus 137 ~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~----aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~-- 210 (346)
T PRK05096 137 HFVQFVAKAREAWPDKTICAGNVVTGEMVEELIL----SGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAH-- 210 (346)
T ss_pred HHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHH----cCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHH--
Confidence 3456677777765565566666678888877765 3776555666 66554322111111224456655555433
Q ss_pred HHhhhhcCCceEEEEecC-CCcchHHHHHhhhcCCCcEEecCC
Q 009444 300 HVEVESVENGVGIVKLMG-RYSGFISMYATLASRDVDCCLIPE 341 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMG-R~sG~LAl~aaLAs~~ad~ilIPE 341 (534)
..++.||===| |++|+|+-.. |. |||.|.+-.
T Consensus 211 -------~~gvpiIADGGi~~sGDI~KAl--aa-GAd~VMlGs 243 (346)
T PRK05096 211 -------GLGGQIVSDGGCTVPGDVAKAF--GG-GADFVMLGG 243 (346)
T ss_pred -------HcCCCEEecCCcccccHHHHHH--Hc-CCCEEEeCh
Confidence 12344443222 6889998654 44 789888653
No 234
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=26.29 E-value=1.9e+02 Score=26.61 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCc---EEEEEcCC--cchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCC-hhhHHHHHHHH
Q 009444 222 TNKIVDNIEDRGIN---QVYIIGGD--GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG-FDTAVEEAQRA 295 (534)
Q Consensus 222 ~~~iv~~l~~~~Id---~LvvIGGd--gS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~G-FdTAv~~~~~a 295 (534)
+..+...+++...+ .++.+--| .+-..|..|.+++++++..+.+..+++ +...| .+ |..++...++.
T Consensus 7 lnsl~~~~~~~~~~~~~~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~-----l~~~~--~~~F~~Gl~~Lv~~ 79 (136)
T PF09651_consen 7 LNSLVRLLEKGKDDDKDEVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEG-----LQTED--PEKFREGLRNLVRW 79 (136)
T ss_dssp HHHHHHHHHHHT--GGGEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE--------E------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeee-----ecccc--hHHHHHHHHHHHHH
Confidence 33444444444432 45555443 235567788889988888877777665 32222 22 88899888888
Q ss_pred HHHHHHhhhhcCCceEEEEecCCCc---chHHHHHhhhcCCCcEEecCCC
Q 009444 296 INAAHVEVESVENGVGIVKLMGRYS---GFISMYATLASRDVDCCLIPES 342 (534)
Q Consensus 296 i~~i~~~A~S~~~rv~iVEvMGR~s---G~LAl~aaLAs~~ad~ilIPE~ 342 (534)
+...-..+......++| =.-|++= +|+.+.+.+ - +..++||-|.
T Consensus 80 ~~~~v~~~~~~~~~v~~-n~TGGfK~~~~~~~~~g~~-~-~~~v~Yi~E~ 126 (136)
T PF09651_consen 80 VAEEVKNYKGRGYEVIF-NATGGFKAEIAYLTLLGML-Y-GDPVYYIFEE 126 (136)
T ss_dssp THHHHHHHHHTT-EEEE-E-SSS-HHHHHHHHHHHHH-T---EEEEEETT
T ss_pred HHHHHHHhhcCCCeEEE-EeCCChHHHHHHHHHHHHH-c-CCCEEEEEcC
Confidence 88776655444444444 4455543 455555554 3 6889999986
No 235
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.16 E-value=5.9e+02 Score=24.45 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
...+.++.+...++|++++...+..-. . .+.+.+++ ++||.+
T Consensus 43 ~~~~~i~~l~~~~~dgiii~~~~~~~~---~-~~~~~~~~--ipvV~i 84 (270)
T cd06296 43 PERQWVERLSARRTDGVILVTPELTSA---Q-RAALRRTG--IPFVVV 84 (270)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCChH---H-HHHHhcCC--CCEEEE
Confidence 345678888899999999988764422 2 24444444 566654
No 236
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=26.07 E-value=6.7e+02 Score=25.01 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=57.1
Q ss_pred EccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC----------
Q 009444 150 VTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG---------- 219 (534)
Q Consensus 150 vtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~---------- 219 (534)
|.||+ +-|+..+... .+.. .++.+|.-+-.|..-.+. .-+++..+.+...||.+| | .++
T Consensus 77 IVSG~-A~GiD~~ah~---~al~-~~g~tIaVl~~gld~~yp----~~n~~l~~~i~~~gglli-S-e~p~~~~~~~~~f 145 (220)
T TIGR00732 77 IVSGL-ALGIDGIAHK---AALK-VNGRTIAVLGTGLDQIYP----RQNSKLAAKIAENGGLLL-S-EYPPDTKPIKYNF 145 (220)
T ss_pred EEcCc-hhhHHHHHHH---HHHH-cCCCEEEEECCCCccCCc----hhhHHHHHHHHHcCCEEE-E-ecCCCCCCCcccH
Confidence 34444 5566554322 2222 345455544555533222 224556667777888766 2 221
Q ss_pred chHHHHHHHHHHhCCcEEEEEcC---CcchHHHHHHHHHHHHcCCceeEeeecccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGG---DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGG---dgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDN 274 (534)
..+.+++..|- +++|+++. .||+.+|.. +.++| -+|..+|..|++
T Consensus 146 ~~RNriia~ls----~~vivve~~~~sGtl~ta~~----A~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 146 PKRNRIISGLS----RAVLVVEAPLKSGALITARY----ALEQG--REVFAYPGDLNS 193 (220)
T ss_pred HHHHHHHHHhc----CEEEEEECCCCCchHHHHHH----HHHhC--CcEEEEcCCCCC
Confidence 13456655554 67888887 466665543 33345 468999998875
No 237
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.80 E-value=1.1e+02 Score=31.18 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
..++.++.+++.|++++++- |........+.+.++++|++.-.+.-|.|
T Consensus 103 G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 45888999999999999998 67788888888999999988655666655
No 238
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=25.75 E-value=2.2e+02 Score=32.29 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=59.5
Q ss_pred eEEEEccCCCCchh-hHHHHHHHHHHHHhCCCcEEEEEc-ccccc-cccCCcccCCHHHHhhHhhc-------CCc--ce
Q 009444 146 RACIVTCGGLCPGI-NTVIREIVCGLSYMYGVDEILGIE-GGYRG-FYSKNTLTLSPKVVNDIHKR-------GGT--IL 213 (534)
Q Consensus 146 riaIvtsGG~aPGm-NavIr~iv~~~~~~~~~~~V~Gi~-~G~~G-L~~~~~~~L~~~~V~~i~~~-------GGs--~L 213 (534)
.|+|+++ ..+|+ -.=|.++++.....+++..|+.+. .||.| ..++-+.......++.+..+ .+. +|
T Consensus 131 ~I~V~tT--C~t~lIGDDi~av~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNli 208 (513)
T TIGR01861 131 RMTIYQT--CATALIGDDIAAIAKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYV 208 (513)
T ss_pred eEEEEcc--CchhhccCCHHHHHHHHHHhcCCCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEe
Confidence 4666653 33332 222344444443334334566665 79999 44432211111122222211 111 34
Q ss_pred eecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH
Q 009444 214 RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 254 (534)
Q Consensus 214 GTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e 254 (534)
|.-...-|+..+.+.|+++||+.+.++.|+.++.....+.+
T Consensus 209 G~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~ 249 (513)
T TIGR01861 209 GEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHR 249 (513)
T ss_pred CCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhcc
Confidence 43333457899999999999999999999999877665543
No 239
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=25.60 E-value=1.9e+02 Score=30.47 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCc-ccc---CCCCChhhHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI-AVI---DKSFGFDTAVEEAQRA 295 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI-~gt---D~S~GFdTAv~~~~~a 295 (534)
.++++.+..|-+ .+|.++||||..|-.+ .+|++-+++.+.+.-.|-=+.=||-+. .+. --|=|-.|=-..+.+.
T Consensus 198 ~~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 198 QNRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 356777777765 6999999999999755 567788887775555555555555221 111 1244555544444444
Q ss_pred HHHHH
Q 009444 296 INAAH 300 (534)
Q Consensus 296 i~~i~ 300 (534)
++.+.
T Consensus 276 ~~~l~ 280 (298)
T PRK01045 276 IARLK 280 (298)
T ss_pred HHHHH
Confidence 44443
No 240
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=25.32 E-value=6.5e+02 Score=25.24 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=58.6
Q ss_pred CchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC---CchHHHHHHHHHHh
Q 009444 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (534)
Q Consensus 156 aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~ 232 (534)
.|..-...+++++.+...++..+|.-+.....- -..+.......+...|+.+.+..+. ..|+..++..+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~-----g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~ 189 (343)
T PF13458_consen 115 SPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPY-----GRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSA 189 (343)
T ss_dssp S--HHHHHHHHHHHHHHTTTTSEEEEEEESSHH-----HHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHT
T ss_pred eccccHHHHHHHHHHHHHcCCcEEEEEecCchh-----hhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhc
Confidence 445556677777766544565666655432210 1222223344566778887766553 36889999999999
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCce
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i 263 (534)
+.|.+++.++-. .+..+.+.+.+.+++.
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~~~~~ 217 (343)
T PF13458_consen 190 GPDVVVLAGDPA---DAAAFLRQLRQLGLKP 217 (343)
T ss_dssp TTSEEEEESTHH---HHHHHHHHHHHTTGCS
T ss_pred CCCEEEEeccch---hHHHHHHHHHhhcccc
Confidence 999966666332 2333445556667654
No 241
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=25.14 E-value=6.4e+02 Score=24.48 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
..+.++.|...++|++++...+. .....+.+.+.+ + ++||.+
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~~~--~~~~~~l~~~~~-~--ipvV~~ 85 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPIDP--KAVIPALNKAAA-G--IKLITT 85 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecCCh--hHhHHHHHHHhc-C--CCEEEe
Confidence 45778888899999999997652 222223333333 4 556654
No 242
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=25.11 E-value=6.6e+02 Score=24.65 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=42.5
Q ss_pred eEEEEccC---CCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchH
Q 009444 146 RACIVTCG---GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (534)
Q Consensus 146 riaIvtsG---G~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 222 (534)
|||++... -.-|-.+.++.++-+.+.+ ++ .+++-. .+....+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~g-y~~~i~--------------------------------~~~~~~~~ 46 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LG-IEYKYV--------------------------------ESKSDADY 46 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cC-CeEEEE--------------------------------ecCCHHHH
Confidence 58888875 3678899999999888764 33 222211 11112334
Q ss_pred HHHHHHHHHhCCcEEEEEcC
Q 009444 223 NKIVDNIEDRGINQVYIIGG 242 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGG 242 (534)
.+.++.|...++|++++.+-
T Consensus 47 ~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 47 EPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHhCCCCEEEEcCc
Confidence 56788899999999999874
No 243
>PLN00197 beta-amylase; Provisional
Probab=25.10 E-value=4.8e+02 Score=30.00 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhCCcEEEE------Ec--CCc--chHHHHHHHHHHHHcCCceeEee----------------ecccc--
Q 009444 221 DTNKIVDNIEDRGINQVYI------IG--GDG--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI-- 272 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~Lvv------IG--Gdg--S~~~A~~L~e~~~~~g~~i~vvg----------------IPkTI-- 272 (534)
.++.-+..||..|++++.+ += |.+ -..+-.+|++.+++.|+++++|- +|+=+
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~ 207 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVE 207 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHH
Confidence 3566677888889998864 22 222 24556778888888888877652 55443
Q ss_pred ----ccCccccCC---------CCChh--------hHHHHHHHHHHHHHHhhhhc-CCceEEEEecCCCcc
Q 009444 273 ----DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV-ENGVGIVKLMGRYSG 321 (534)
Q Consensus 273 ----DNDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~-~~rv~iVEvMGR~sG 321 (534)
|.||..||. |+|.| |+++.+.+.+...+++-..- ..-|-=|++=.+-||
T Consensus 208 ~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~G 278 (573)
T PLN00197 208 EVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAG 278 (573)
T ss_pred hhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCc
Confidence 448999985 89998 55999999999988876553 334555555444333
No 244
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=25.00 E-value=8.4e+02 Score=25.78 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=89.7
Q ss_pred EEEccCCCCchhhH--HHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC------C
Q 009444 148 CIVTCGGLCPGINT--VIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG------G 219 (534)
Q Consensus 148 aIvtsGG~aPGmNa--vIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~------~ 219 (534)
-|+.+||+ |=++. .+..++..+.. .+ .+.+++-|.+... .....++.+.++.+...|=.++..+-. .
T Consensus 162 eV~lsGGD-PLl~~d~~L~~ll~~L~~-i~--~~~~IRi~tr~~~-~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~ 236 (331)
T TIGR00238 162 EILISGGD-PLMAKDHELEWLLKRLEE-IP--HLVRLRIGTRLPV-VIPQRITDELCELLASFELQLMLVTHINHCNEIT 236 (331)
T ss_pred EEEEECCc-cccCCHHHHHHHHHHHHh-cC--CccEEEeecCCCc-cCchhcCHHHHHHHHhcCCcEEEEccCCChHhCC
Confidence 57888998 44433 47777777653 22 3445554444321 112345666666555554333222211 1
Q ss_pred chHHHHHHHHHHhCCcE----EEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc--cCccccCCCCChhhHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQ----VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID--NDIAVIDKSFGFDTAVEEAQ 293 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~----LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID--NDI~gtD~S~GFdTAv~~~~ 293 (534)
+...+.++.|++.|+.. .+.=|=++.......|.+.+.+.|+. |=-+. ..+.+. =-|.+-.+.+.
T Consensus 237 ~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~------pyyl~~~~~~~g~---~~f~~~~~~~~ 307 (331)
T TIGR00238 237 EEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII------PYYLHYLDKVQGA---KHFLVPDAEAA 307 (331)
T ss_pred HHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee------cCeecCcCCCCCc---ccccCCHHHHH
Confidence 34677788888888753 45667788888788888877665532 11111 111222 34788888888
Q ss_pred HHHHHHHHhhhhcCCceEEEEecC
Q 009444 294 RAINAAHVEVESVENGVGIVKLMG 317 (534)
Q Consensus 294 ~ai~~i~~~A~S~~~rv~iVEvMG 317 (534)
+.+..++.-.++.---.+++|+.|
T Consensus 308 ~i~~~l~~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 308 QIVKELARLTSGYLVPKFAVEIMG 331 (331)
T ss_pred HHHHHHHhcCCCCcceeEEecCCC
Confidence 888877766554322357888765
No 245
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=25.00 E-value=4.6e+02 Score=28.95 Aligned_cols=102 Identities=25% Similarity=0.300 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee-ccccccCccccCCCCChh--hHHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFD--TAVEEAQRAIN 297 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI-PkTIDNDI~gtD~S~GFd--TAv~~~~~ai~ 297 (534)
...+.++.+++.-.+..++.|+--|...|..+.+ .|.+.-.||+ |.+|.-.-..++ +|.. ||+..+.+++.
T Consensus 251 ~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~----aGad~i~vg~g~G~~~~t~~~~~--~g~p~~~~i~~~~~~~~ 324 (450)
T TIGR01302 251 YVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID----AGADGLRVGIGPGSICTTRIVAG--VGVPQITAVYDVAEYAA 324 (450)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH----hCCCEEEECCCCCcCCccceecC--CCccHHHHHHHHHHHHh
Confidence 3455666666654577778888888888877765 3777655676 776643222111 2333 45444444332
Q ss_pred HHHHhhhhcCCceEEEEecC--CCcchHHHHHhhhcCCCcEEecCC
Q 009444 298 AAHVEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIPE 341 (534)
Q Consensus 298 ~i~~~A~S~~~rv~iVEvMG--R~sG~LAl~aaLAs~~ad~ilIPE 341 (534)
. .++-|+ ..| |++|.++- |||. ||+.+.+-.
T Consensus 325 -------~--~~vpvi-adGGi~~~~di~k--Ala~-GA~~V~~G~ 357 (450)
T TIGR01302 325 -------Q--SGIPVI-ADGGIRYSGDIVK--ALAA-GADAVMLGS 357 (450)
T ss_pred -------h--cCCeEE-EeCCCCCHHHHHH--HHHc-CCCEEEECc
Confidence 1 123333 344 56667654 4555 788877653
No 246
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=24.95 E-value=5.4e+02 Score=26.21 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCC
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL 261 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~ 261 (534)
..+.+.+.++++++|+++. +-++.......+.+.+.+.|.
T Consensus 57 ~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g~ 96 (326)
T PRK12767 57 YIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIGV 96 (326)
T ss_pred HHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcCc
Confidence 4678888888999996554 445454444555565655553
No 247
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.82 E-value=2.2e+02 Score=26.27 Aligned_cols=100 Identities=12% Similarity=0.186 Sum_probs=55.4
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHH-HHhhHhhcCCcceeecCC----Cc
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK-VVNDIHKRGGTILRTSRG----GH 220 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~-~V~~i~~~GGs~LGTsR~----~~ 220 (534)
+|-+-+.|||.=-+..-|-+. +.+. .+.+|+ +.| +..+.+ .++......-.++|-|-- ..
T Consensus 1 ~vvigtv~gD~HdiGkniv~~---~L~~-~GfeVi-----dLG------~~v~~e~~v~aa~~~~adiVglS~L~t~~~~ 65 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDH---AFTE-AGFNVV-----NLG------VLSPQEEFIDAAIETDADAILVSSLYGHGEI 65 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHH---HHHH-CCCEEE-----ECC------CCCCHHHHHHHHHHcCCCEEEEeccccCCHH
Confidence 355667777765544432222 2222 334554 122 223333 344555555556665441 25
Q ss_pred hHHHHHHHHHHhCC-cEEEEEcCCcc---hHHHHHHHHHHHHcCC
Q 009444 221 DTNKIVDNIEDRGI-NQVYIIGGDGT---QKGAALIYKEVEKRGL 261 (534)
Q Consensus 221 d~~~iv~~l~~~~I-d~LvvIGGdgS---~~~A~~L~e~~~~~g~ 261 (534)
.+.++++.|++.++ +..+++||.-. .+.+. -.+++++.|+
T Consensus 66 ~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~-~~~~L~~~Gv 109 (128)
T cd02072 66 DCKGLREKCDEAGLKDILLYVGGNLVVGKQDFED-VEKRFKEMGF 109 (128)
T ss_pred HHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHH-HHHHHHHcCC
Confidence 68899999999999 88899999843 33322 2234555565
No 248
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.74 E-value=7.2e+02 Score=24.95 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
....++.+..+++|++++.+.+... .....+++.+.++ +||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~gi--PvV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKNI--PVIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCCC--CEEEe
Confidence 4577888899999999998866431 1223344444564 55643
No 249
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=24.24 E-value=1.3e+02 Score=35.98 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~ 253 (534)
..+++++.+++.++|.+|-|||--.+..|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 478899999999999999999999999887775
No 250
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=24.05 E-value=2.6e+02 Score=28.72 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCcEEEEE-----cCCcchHHHHHHHHHHHHcCCceeEeeeccccccCc
Q 009444 224 KIVDNIEDRGINQVYII-----GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvI-----GGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI 276 (534)
..++..-.+|.|-.|.| +|-+++.+|..|+..+++.++++-++|- .|+|.|-
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~t 127 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYA 127 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCC
Confidence 55666667899987777 4568999999999999988888877774 5555554
No 251
>PRK04011 peptide chain release factor 1; Provisional
Probab=23.99 E-value=3.4e+02 Score=29.75 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=17.0
Q ss_pred chHHHHHhhhcCCCcEEecCCC
Q 009444 321 GFISMYATLASRDVDCCLIPES 342 (534)
Q Consensus 321 G~LAl~aaLAs~~ad~ilIPE~ 342 (534)
|.=....||..+.++..||+|.
T Consensus 300 G~~~V~~Ale~GAVetLLV~d~ 321 (411)
T PRK04011 300 GEEEVRKALEMGAVDTLLISED 321 (411)
T ss_pred cHHHHHHHHHcCCceEEEEecc
Confidence 5666777888767889999875
No 252
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=23.83 E-value=7.5e+02 Score=24.83 Aligned_cols=67 Identities=4% Similarity=-0.006 Sum_probs=42.2
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
..||++...-..|-.+.+++++.+.+.. ++ .++.-+ .+........+
T Consensus 62 ~~Igvv~~~~~~~~~~~l~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 108 (328)
T PRK11303 62 RSIGLIIPDLENTSYARIAKYLERQARQ-RG-YQLLIA-------------------------------CSDDQPDNEMR 108 (328)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4799998765667788888888776643 22 222210 01111122346
Q ss_pred HHHHHHHhCCcEEEEEcCCc
Q 009444 225 IVDNIEDRGINQVYIIGGDG 244 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdg 244 (534)
+++.|...++|++++.+.+.
T Consensus 109 ~~~~l~~~~vdgiIi~~~~~ 128 (328)
T PRK11303 109 CAEHLLQRQVDALIVSTSLP 128 (328)
T ss_pred HHHHHHHcCCCEEEEcCCCC
Confidence 77788889999999988754
No 253
>PRK05261 putative phosphoketolase; Provisional
Probab=23.77 E-value=1.1e+03 Score=28.44 Aligned_cols=178 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccccCCccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEccc-----------ccccccCCcccC
Q 009444 129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGG-----------YRGFYSKNTLTL 197 (534)
Q Consensus 129 F~~ag~r~~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G-----------~~GL~~~~~~~L 197 (534)
|.+.-|--+-.+.++.+|--.+==-|-|||+|-+-..+.+-..+ |.-..+|-.-.| .+|=+..-+-++
T Consensus 28 yl~~n~ll~~pl~~~~~K~r~~GHwGt~pgln~vyahln~li~~-~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~i 106 (785)
T PRK05261 28 YLRDNPLLREPLKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIRK-YDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEI 106 (785)
T ss_pred HHhcCcccCCCCCHHHCCcccCCCCCCcHHHHHHHHHHHHHHhh-cCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCC
Q ss_pred CHHH--HhhHhhc---------------CCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHH-----------
Q 009444 198 SPKV--VNDIHKR---------------GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGA----------- 249 (534)
Q Consensus 198 ~~~~--V~~i~~~---------------GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A----------- 249 (534)
+.++ +.....+ +|.+-.|+--+..+...+-.-.+..=..++|+-|||.....
T Consensus 107 s~d~~gl~~lfrqfs~pgg~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~ 186 (785)
T PRK05261 107 TQDEEGMARLFKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKF 186 (785)
T ss_pred CccHHHHHHHHHhccCCCCcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhh
Q ss_pred -------------------------------HHHHHHHHHcCCceeEeeeccccc-cCccccCCCCChhhHHHHHHHHHH
Q 009444 250 -------------------------------ALIYKEVEKRGLQVAVAGIPKTID-NDIAVIDKSFGFDTAVEEAQRAIN 297 (534)
Q Consensus 250 -------------------------------~~L~e~~~~~g~~i~vvgIPkTID-NDI~gtD~S~GFdTAv~~~~~ai~ 297 (534)
..|.+.++.+|++ |-.|| ||+.-+... +..|++.+.+.|.
T Consensus 187 ~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~------~i~VDG~D~~av~~a--~a~al~~~i~~i~ 258 (785)
T PRK05261 187 LNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYE------PYFVEGDDPADMHQE--MAAALDTAIEEIR 258 (785)
T ss_pred cccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCe------eEEECCCCHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HHHHhhhhcCCc------eEEEEe
Q 009444 298 AAHVEVESVENG------VGIVKL 315 (534)
Q Consensus 298 ~i~~~A~S~~~r------v~iVEv 315 (534)
.|+..|+..... +.|+++
T Consensus 259 ~iq~~Ar~~~~~~~P~wp~Ii~rT 282 (785)
T PRK05261 259 AIQKEAREGGDTTRPRWPMIVLRT 282 (785)
T ss_pred HHHHHHHhCCCCCCCCceEEEEEC
No 254
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=23.69 E-value=7.3e+02 Score=27.86 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCc-eeEeeeccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~-i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
....+++.+++.-.+..++.|.-.|..++..|.+. |.+ |.|-+=|.||.+-=..++....-.||+-.+++++...
T Consensus 252 ~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~----G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~ 327 (475)
T TIGR01303 252 KMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA----GANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL 327 (475)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh----CCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc
Confidence 35677888887656666666556678888888653 766 3455668999877666666666666666655554321
Q ss_pred HHhhhhcCCceEEEEecC--CCcchHHHHHhhhcCCCcEEecC
Q 009444 300 HVEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIP 340 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMG--R~sG~LAl~aaLAs~~ad~ilIP 340 (534)
++.|| ..| |++|.++-. ||. ||+.+.+-
T Consensus 328 ---------~~~vi-adGgi~~~~di~ka--la~-GA~~vm~g 357 (475)
T TIGR01303 328 ---------GGHVW-ADGGVRHPRDVALA--LAA-GASNVMVG 357 (475)
T ss_pred ---------CCcEE-EeCCCCCHHHHHHH--HHc-CCCEEeec
Confidence 24433 344 466777654 455 78887765
No 255
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=23.42 E-value=1.4e+02 Score=29.15 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=37.8
Q ss_pred hcCCcceeecCCC-chHHHHHHHHHH-hCCcEEEEEcCCcc-hHHHHHHHHHHHHcCC
Q 009444 207 KRGGTILRTSRGG-HDTNKIVDNIED-RGINQVYIIGGDGT-QKGAALIYKEVEKRGL 261 (534)
Q Consensus 207 ~~GGs~LGTsR~~-~d~~~iv~~l~~-~~Id~LvvIGGdgS-~~~A~~L~e~~~~~g~ 261 (534)
..|-.+.|++++. ...++++.|+-. -+|..|++.|-+-. +.+.+.|. ++.+.|+
T Consensus 39 ~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~-aLh~NGi 95 (176)
T PF04208_consen 39 DAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLL-ALHENGI 95 (176)
T ss_pred hcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHH-HHHHcCC
Confidence 3455899999984 579999988854 59999999988753 44444442 3445565
No 256
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.34 E-value=1.3e+02 Score=30.80 Aligned_cols=55 Identities=20% Similarity=0.395 Sum_probs=37.8
Q ss_pred ecCC--CchHHHHHHHHHHhCCcEEEEEcCCcch----------HHHHHHHHHHHHc--CCceeEeeec
Q 009444 215 TSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQ----------KGAALIYKEVEKR--GLQVAVAGIP 269 (534)
Q Consensus 215 TsR~--~~d~~~iv~~l~~~~Id~LvvIGGdgS~----------~~A~~L~e~~~~~--g~~i~vvgIP 269 (534)
|+|. ...++..+..+...||+.+++++||-.- ..|..|-+.+++. .+.|-+++.|
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~P 134 (272)
T TIGR00676 66 TCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYP 134 (272)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCC
Confidence 4454 2457788888999999999999999762 3366566666553 3555556555
No 257
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.29 E-value=7.7e+02 Score=25.27 Aligned_cols=131 Identities=24% Similarity=0.281 Sum_probs=72.8
Q ss_pred CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc-ccCccccCCC----CChhhHHHHHHHHHHHHHHhhhhcCC
Q 009444 234 INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI-DNDIAVIDKS----FGFDTAVEEAQRAINAAHVEVESVEN 308 (534)
Q Consensus 234 Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI-DNDI~gtD~S----~GFdTAv~~~~~ai~~i~~~A~S~~~ 308 (534)
.=..|+..|+.+.....++.+.+.+.|.++-=+|+|=+= =-|=|.+..+ +-=.+-++.+-+.+.+++..- .
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~---~- 88 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKD---P- 88 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---C-
Confidence 556789999999999999889998999998888888420 0000111111 100111122233444444211 1
Q ss_pred ceEEEEecCCCc-----chHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhCCc-EEEEEeCCCC
Q 009444 309 GVGIVKLMGRYS-----GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH-MVIVVAEGAG 375 (534)
Q Consensus 309 rv~iVEvMGR~s-----G~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~~~-~vIVvaEGa~ 375 (534)
.+-+| +|+=.. |.=...-.++..|+|-++||..|++ -.+.+.++.++.+- -|.+++....
T Consensus 89 ~~p~v-lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~e------e~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 89 TIPIV-LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPE------EAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred CCCEE-EEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHH------HHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 23445 887332 4332222233338999999988762 23344555666664 4555877764
No 258
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=23.23 E-value=1.8e+02 Score=32.54 Aligned_cols=53 Identities=9% Similarity=0.246 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID 273 (534)
.+++..+..|-...+|.++||||.-|-.+ ..|++-+++++.+.-.|-=|.=|+
T Consensus 349 qeRQdA~~~L~~~~vDlmiVVGG~NSSNT-~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 349 QERQDAMYKLVEEKLDLMLVVGGWNSSNT-SHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHHhCCCEEEECCHHHcC
Confidence 35677888886678999999999998755 457787777776655555565555
No 259
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.13 E-value=6.6e+02 Score=23.95 Aligned_cols=42 Identities=14% Similarity=0.416 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
..++++.+...++|++++.+.+..... ..+.+.+.+ +++|.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~~~---~~~~~~~~~--ipvV~~ 85 (268)
T cd06289 44 QEQLLSTMLEHGVAGIILCPAAGTSPD---LLKRLAESG--IPVVLV 85 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHH---HHHHHHhcC--CCEEEE
Confidence 456778888999999999987654322 223444455 456654
No 260
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.13 E-value=1.4e+02 Score=24.98 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=28.9
Q ss_pred cCCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHH
Q 009444 208 RGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (534)
Q Consensus 208 ~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~ 248 (534)
.++-+|=+. . .-.+.+.+.|+++++..+++|||.++...
T Consensus 49 ~~~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~~~is~ 87 (92)
T PF04122_consen 49 NNAPILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGEGAISD 87 (92)
T ss_pred cCCeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCCCccCH
Confidence 445566666 3 22378888889999999999999988643
No 261
>PLN02803 beta-amylase
Probab=23.10 E-value=5.5e+02 Score=29.45 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhCCcEEEE------Ec--CCc--chHHHHHHHHHHHHcCCceeEee----------------ecccc--
Q 009444 221 DTNKIVDNIEDRGINQVYI------IG--GDG--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI-- 272 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~Lvv------IG--Gdg--S~~~A~~L~e~~~~~g~~i~vvg----------------IPkTI-- 272 (534)
.++.-+..||..|++++.+ += |.+ -..+-.+|++.+++.|+++++|- +|+=+
T Consensus 108 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e 187 (548)
T PLN02803 108 AMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLE 187 (548)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHH
Confidence 3566677788888888864 22 222 24556678888888888877652 45433
Q ss_pred ----ccCccccCC---------CCChh--------hHHHHHHHHHHHHHHhhhhcC-CceEEEEecCCCcc
Q 009444 273 ----DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE-NGVGIVKLMGRYSG 321 (534)
Q Consensus 273 ----DNDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~~-~rv~iVEvMGR~sG 321 (534)
|.||..||. |+|.| |+++.+.+.+...+++-..-. .-|-=|++=.+-||
T Consensus 188 ~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~VGlGP~G 258 (548)
T PLN02803 188 EMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVGMGPCG 258 (548)
T ss_pred hhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccccCc
Confidence 458999985 88888 789999999998887765533 33555555443333
No 262
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.99 E-value=4.6e+02 Score=22.73 Aligned_cols=27 Identities=11% Similarity=0.459 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhCC-cEEEEEcCCcchH
Q 009444 221 DTNKIVDNIEDRGI-NQVYIIGGDGTQK 247 (534)
Q Consensus 221 d~~~iv~~l~~~~I-d~LvvIGGdgS~~ 247 (534)
...++++.+++.+- +..+++||...-.
T Consensus 66 ~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 66 LMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 45677777777776 6777777766443
No 263
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=22.94 E-value=1.2e+02 Score=31.88 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=24.9
Q ss_pred hhhcCCceEEEEecCC-CcchHHHHHhhhcCCCcEEec
Q 009444 303 VESVENGVGIVKLMGR-YSGFISMYATLASRDVDCCLI 339 (534)
Q Consensus 303 A~S~~~rv~iVEvMGR-~sG~LAl~aaLAs~~ad~ilI 339 (534)
.....++|++|=|||- |.||+++.-.-.. .+|.+++
T Consensus 17 ~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~-~~d~VVV 53 (285)
T COG0414 17 LRKEGKRVGLVPTMGNLHEGHLSLVRRAKK-ENDVVVV 53 (285)
T ss_pred HHHcCCEEEEEcCCcccchHHHHHHHHHhh-cCCeEEE
Confidence 3344578999999997 8899998654333 5665443
No 264
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=22.88 E-value=7.7e+02 Score=24.64 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=45.5
Q ss_pred cEEEEEcCCc----chHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHhhhhcCCce
Q 009444 235 NQVYIIGGDG----TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGV 310 (534)
Q Consensus 235 d~LvvIGGdg----S~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv 310 (534)
-.|++.||.+ +.+.-..+++.+.++|+.+-.+=.|.-=+++ + ...+++...+.+..+++.++...... .++
T Consensus 28 ~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~--~--~~~~~~~~~~d~~~~~~~l~~~~~g~-~~i 102 (274)
T TIGR03100 28 GVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE--G--ENLGFEGIDADIAAAIDAFREAAPHL-RRI 102 (274)
T ss_pred eEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHHHhhCCCC-CcE
Confidence 4677888874 3333345777787788764444333322221 1 11355656666777777776543222 234
Q ss_pred EEEEecCCCcc-hHHHHHh
Q 009444 311 GIVKLMGRYSG-FISMYAT 328 (534)
Q Consensus 311 ~iVEvMGR~sG-~LAl~aa 328 (534)
++ +|.+.| .+|+..+
T Consensus 103 ~l---~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 103 VA---WGLCDAASAALLYA 118 (274)
T ss_pred EE---EEECHHHHHHHHHh
Confidence 44 455554 4455444
No 265
>PRK05660 HemN family oxidoreductase; Provisional
Probab=22.83 E-value=78 Score=33.98 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=46.9
Q ss_pred hCCcEEEEEcCCcchH---HHHHHHHHHHHc-----CCceeEeeeccccccCc-------cccCCCCChhhHHHHHHHHH
Q 009444 232 RGINQVYIIGGDGTQK---GAALIYKEVEKR-----GLQVAVAGIPKTIDNDI-------AVIDKSFGFDTAVEEAQRAI 296 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~---~A~~L~e~~~~~-----g~~i~vvgIPkTIDNDI-------~gtD~S~GFdTAv~~~~~ai 296 (534)
..++.+++-||.-|+- ....|.+.++++ +..+.+-.=|.|++.+. ..+-.|+|.+|.-....+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 5799999999999974 344455555542 34677788899998775 33456999998887666555
Q ss_pred HH
Q 009444 297 NA 298 (534)
Q Consensus 297 ~~ 298 (534)
.+
T Consensus 137 ~r 138 (378)
T PRK05660 137 GR 138 (378)
T ss_pred CC
Confidence 43
No 266
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=22.79 E-value=1.4e+02 Score=23.79 Aligned_cols=45 Identities=18% Similarity=0.410 Sum_probs=27.5
Q ss_pred CCHHHHhhHhhcCCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCC-cchHHHHHHHHHH
Q 009444 197 LSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD-GTQKGAALIYKEV 256 (534)
Q Consensus 197 L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGd-gS~~~A~~L~e~~ 256 (534)
++.+.|+.+.++| ++.+++++.|++.||+.+ | .+..+..++.|++
T Consensus 8 i~~~lVd~F~~mG----------F~~dkVvevlrrlgik~~-----n~~dn~t~~~ilEEL 53 (55)
T PF09288_consen 8 IDKDLVDQFENMG----------FERDKVVEVLRRLGIKSM-----NGVDNETENKILEEL 53 (55)
T ss_dssp -SHHHHHHHHHHT------------HHHHHHHHHHS--SS-------SS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHcC----------CcHHHHHHHHHHhCCCCC-----CCccchhHHHHHHHH
Confidence 4566677776664 678999999999999864 2 3456677777765
No 267
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=22.76 E-value=69 Score=32.76 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccC
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDND 275 (534)
...++++.++..+.|.++-+||--...-+...+.. .+++.+.||-+.+||
T Consensus 63 ~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 63 EVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHD 112 (250)
T ss_dssp HHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSG
T ss_pred HHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEeccccccc
Confidence 46677888888899999999996666666555543 357899999999999
No 268
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=22.66 E-value=1.4e+02 Score=27.05 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeE
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAV 265 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~v 265 (534)
+.+.+.+.+++++||.+++-=-+.......++.+++++.++++.+
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 356788889999999999998888888888899999877765433
No 269
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.99 E-value=7e+02 Score=28.07 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee-ccccccCccccCC--CCChh--hHHHHHHHHHHH
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDK--SFGFD--TAVEEAQRAINA 298 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI-PkTIDNDI~gtD~--S~GFd--TAv~~~~~ai~~ 298 (534)
+.++.+++.--+..++.|.-.|...|..+.+ .|.+.-.||+ |.+|. .|.. -+|.. ||+..+.++++
T Consensus 271 ~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~----aGad~I~vg~g~Gs~~----~t~~~~~~g~p~~~ai~~~~~~~~- 341 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIAGNVVTADQAKNLID----AGADGLRIGMGSGSIC----ITQEVCAVGRPQASAVYHVARYAR- 341 (495)
T ss_pred HHHHHHHhhCCCceEEECCcCCHHHHHHHHH----cCCCEEEECCcCCccc----ccchhccCCCChHHHHHHHHHHHh-
Confidence 4555555543355666666666667666654 3666555555 65552 1111 13333 34434433322
Q ss_pred HHHhhhhcCCceEEEEecC-CCcchHHHHHhhhcCCCcEEecC
Q 009444 299 AHVEVESVENGVGIVKLMG-RYSGFISMYATLASRDVDCCLIP 340 (534)
Q Consensus 299 i~~~A~S~~~rv~iVEvMG-R~sG~LAl~aaLAs~~ad~ilIP 340 (534)
. .++-++=-=| |++|.++-..+ . |||.|.+-
T Consensus 342 ------~--~~v~vIadGGi~~~~di~kAla--~-GA~~Vm~G 373 (495)
T PTZ00314 342 ------E--RGVPCIADGGIKNSGDICKALA--L-GADCVMLG 373 (495)
T ss_pred ------h--cCCeEEecCCCCCHHHHHHHHH--c-CCCEEEEC
Confidence 1 1244443334 67788775544 4 78888764
No 270
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.93 E-value=9.1e+02 Score=25.12 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=61.1
Q ss_pred chhhHHHHHHHHHHHHhC----CCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC---chHHHHHHHH
Q 009444 157 PGINTVIREIVCGLSYMY----GVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG---HDTNKIVDNI 229 (534)
Q Consensus 157 PGmNavIr~iv~~~~~~~----~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~---~d~~~iv~~l 229 (534)
|......+.+++.+.... +..+|.-+..-+. +. ..+-......+...|+.+.+..+.. .|+...+..+
T Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~--~g---~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i 191 (351)
T cd06334 117 PTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSP--FG---KEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQI 191 (351)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCc--cc---hhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHH
Confidence 334445566666655433 3456666554221 11 1111112234456778887777653 5889999999
Q ss_pred HHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEee
Q 009444 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (534)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvg 267 (534)
+..+-|+||+.+-.. .+..+.+.+++.|++.++++
T Consensus 192 ~~~~pd~V~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 226 (351)
T cd06334 192 RRSGPDYVILWGWGV---MNPVAIKEAKRVGLDDKFIG 226 (351)
T ss_pred HHcCCCEEEEecccc---hHHHHHHHHHHcCCCceEEE
Confidence 999999998765543 23345566677788766654
No 271
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.89 E-value=1.1e+02 Score=31.86 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID 273 (534)
.++++.+..|. ...|.++||||..|-.+ .+|++-+++.+.+.-.|-=|.=||
T Consensus 197 ~~RQ~a~~~La-~~vD~miVVGg~~SsNT-~rL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PRK12360 197 KKRQESAKELS-KEVDVMIVIGGKHSSNT-QKLVKICEKNCPNTFHIETADELD 248 (281)
T ss_pred hhHHHHHHHHH-HhCCEEEEecCCCCccH-HHHHHHHHHHCCCEEEECChHHCC
Confidence 35677777774 46999999999998755 557788877765444444444443
No 272
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=21.78 E-value=7.3e+02 Score=26.26 Aligned_cols=176 Identities=20% Similarity=0.306 Sum_probs=78.3
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-c
Q 009444 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-H 220 (534)
Q Consensus 142 ~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~ 220 (534)
++-+=+||-..||.-| ...|..+..+.+ .+- .|+- |+.=++.++ + .+......-|.-|-=-|.+ .
T Consensus 33 ~~~liiGiA~~GG~lp---~~w~~~i~~Ai~-~Gl-~Ivs---GLH~~L~dd-----p-el~~~A~~~g~~i~DvR~p~~ 98 (301)
T PF07755_consen 33 ADTLIIGIAPAGGRLP---PSWRPVILEAIE-AGL-DIVS---GLHDFLSDD-----P-ELAAAAKKNGVRIIDVRKPPK 98 (301)
T ss_dssp -SEEEE---STTHCCH---CCHHHHHHHHHH-TT--EEEE----SSS-HCCH-----H-HHHCCHHCCT--EEETTS--S
T ss_pred CCEEEEecCcCCCcCC---HHHHHHHHHHHH-cCC-CEEe---cChhhhccC-----H-HHHHHHHHcCCeEeeccCCCc
Confidence 4567788888888876 344444444433 343 4432 221122211 1 2333344445444333433 1
Q ss_pred hHHHHHH-HHHHhCCcEEEEEcCCcc---hHHHHHHHHHHHHcCCceeEeeeccc---c-ccCccccCCCCChhhHHHHH
Q 009444 221 DTNKIVD-NIEDRGINQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGIPKT---I-DNDIAVIDKSFGFDTAVEEA 292 (534)
Q Consensus 221 d~~~iv~-~l~~~~Id~LvvIGGdgS---~~~A~~L~e~~~~~g~~i~vvgIPkT---I-DNDI~gtD~S~GFdTAv~~~ 292 (534)
+. .+.. ...+.+-.-+.++|=|-+ |+++..|.++++++|++..+++==-| | +..++ .| ++-.| ++
T Consensus 99 ~~-~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~-iD-av~~D----Fv 171 (301)
T PF07755_consen 99 DL-PVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVP-ID-AVPSD----FV 171 (301)
T ss_dssp S------SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC---GG-GSBGG----GH
T ss_pred cc-ccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCee-cc-chhhh----hH
Confidence 22 2211 122346677888888754 89999999999999988777653222 1 11111 11 22222 34
Q ss_pred HHHHHHHHHhhhhcCCceEEEEecCC--CcchHHHHHh-hhcCCCcEEec
Q 009444 293 QRAINAAHVEVESVENGVGIVKLMGR--YSGFISMYAT-LASRDVDCCLI 339 (534)
Q Consensus 293 ~~ai~~i~~~A~S~~~rv~iVEvMGR--~sG~LAl~aa-LAs~~ad~ilI 339 (534)
+-++..+-.++.. .+.|-|||-+|- |.+|-....+ |....||.+++
T Consensus 172 aGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL 220 (301)
T PF07755_consen 172 AGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVL 220 (301)
T ss_dssp HHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEE
T ss_pred HHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEE
Confidence 4456665556654 347999999995 3344332222 22226775544
No 273
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=21.73 E-value=7.1e+02 Score=23.77 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=39.3
Q ss_pred hHhhcCCcceeecCC---CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCC--ceeEeee
Q 009444 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGI 268 (534)
Q Consensus 204 ~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~--~i~vvgI 268 (534)
.+...|..+...... ..+...+++.+++.+.+++++++.. ..+..+.+++++.|+ ++++++.
T Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 159 AFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSG---EDAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred HHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccc---hHHHHHHHHHHHcCCCCCCcEEec
Confidence 345566666554333 2467788888888888888776653 344455666667777 5556543
No 274
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.71 E-value=2.3e+02 Score=29.39 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=44.5
Q ss_pred hHhhcCCcceeecCC---CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 204 ~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.|...|+.+.+..+. ..|+...+..++.-+-|.++++ +.+. .+..+.+.+++.|++.+++++
T Consensus 171 ~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~--~~~~~~~~~~~~G~~~~~~~~ 235 (357)
T cd06337 171 ALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPP--DFATFWRQAAQAGFKPKIVTI 235 (357)
T ss_pred HHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCcc--HHHHHHHHHHHCCCCCCeEEE
Confidence 345578888877775 3588999999999999997654 4444 233455677778888777654
No 275
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=21.62 E-value=3.4e+02 Score=28.25 Aligned_cols=114 Identities=7% Similarity=-0.070 Sum_probs=60.2
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCH----------HHHhhHhhcCCcc
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSP----------KVVNDIHKRGGTI 212 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~----------~~V~~i~~~GGs~ 212 (534)
+.+||.|++++- --|=+.+.+++.+.+.+ .++++.-+.+.+.... ..+..+.. ..+-++...++..
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~--~g~~~~~~~d~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQ--KGIKDVIVCDLFGESH-PVITEITKYLYLKSYTIGKELYRLFYYGVEK 78 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHh--cCCCcEEEEEhHHhcc-hHHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 457999999765 44778888888888764 2344555566665331 10001000 1111222223322
Q ss_pred eeecCCC-----chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEe
Q 009444 213 LRTSRGG-----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVA 266 (534)
Q Consensus 213 LGTsR~~-----~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vv 266 (534)
+...+.. ....++.+.+++++.|.++.-++.-++ ..+ ..+.+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~---~~~---~~~~~~~ip~~ 131 (380)
T PRK13609 79 IYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAV---PEL---KKQTGISIPTY 131 (380)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHH---HHH---HHhcCCCCCeE
Confidence 2111110 124678899999999988875444322 222 23356667766
No 276
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=21.51 E-value=1.6e+02 Score=28.67 Aligned_cols=60 Identities=23% Similarity=0.216 Sum_probs=36.6
Q ss_pred EEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC--hhhHHHHHHHHHHhCCcEEEEEeCC
Q 009444 313 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 373 (534)
Q Consensus 313 VEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~--~~~l~e~I~~rl~~~~~~vIVvaEG 373 (534)
-++-|+..=-+++..+|+. .|+++++=|---.+|. .+.+.+.|++..++.+..||+++.-
T Consensus 136 ~~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQF-MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3455555556889999998 8999999665444542 2334444444333346677777643
No 277
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.51 E-value=1.4e+02 Score=32.99 Aligned_cols=59 Identities=22% Similarity=0.409 Sum_probs=34.8
Q ss_pred cceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccc
Q 009444 211 TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (534)
Q Consensus 211 s~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTID 273 (534)
+++.|.-- -..++.++.+.-.. |.+||.|||||....- .--+++|+-.++|--+|.--|
T Consensus 96 ~Ivktd~~-gqak~l~e~~~t~~-Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 96 DIVKTDNQ-GQAKALAEAVDTQE-DIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred EEEecCcH-HHHHHHHHHhccCC-CeEEEecCCCcHHHhh--HHHHhcccccCceeeccCccc
Confidence 35544332 23556666666555 9999999999986542 223344454556666665433
No 278
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=21.37 E-value=1.7e+02 Score=28.16 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH
Q 009444 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (534)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (534)
+...+.+++++-||.++-.......+.++....++||.|| |+|++.-.
T Consensus 39 ~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGI-------------ClG~Qlia 86 (193)
T PRK08857 39 IEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGV-------------CLGHQAIA 86 (193)
T ss_pred HhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEE-------------cHHHHHHH
Confidence 4567789999999998765322111222222335678888 99988644
No 279
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.13 E-value=4.2e+02 Score=28.58 Aligned_cols=162 Identities=17% Similarity=0.073 Sum_probs=87.0
Q ss_pred EEEccCCCCchhh-HHHHHHHHHHHHhCCCc------EE--EEEcccccccccCCc-ccC--CHHHHh-hHhhcCCccee
Q 009444 148 CIVTCGGLCPGIN-TVIREIVCGLSYMYGVD------EI--LGIEGGYRGFYSKNT-LTL--SPKVVN-DIHKRGGTILR 214 (534)
Q Consensus 148 aIvtsGG~aPGmN-avIr~iv~~~~~~~~~~------~V--~Gi~~G~~GL~~~~~-~~L--~~~~V~-~i~~~GGs~LG 214 (534)
+|+++||==|=+| ..+..+++.+...++.+ .| .|+..+++-|.+.+. +.| +-...+ ..+.. +.+
T Consensus 163 ~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~---l~p 239 (356)
T PRK14462 163 NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSE---LMP 239 (356)
T ss_pred CeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHH---hCC
Confidence 7888877778888 45666666665322211 11 344444444443322 111 111111 11111 233
Q ss_pred ecCCCchHHHHHHHHHHhC--------CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChh
Q 009444 215 TSRGGHDTNKIVDNIEDRG--------INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 286 (534)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~--------Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFd 286 (534)
.++. ..++.++++++++- |.++++=|=|++...|.+|++.++.. ++.|=-||= |++++.++-.=-+
T Consensus 240 v~~~-~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIPy---n~~~~~~~~~ps~ 313 (356)
T PRK14462 240 INKA-YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLILF---NPHEGSKFERPSL 313 (356)
T ss_pred CCcc-CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEeC---CCCCCCCCCCCCH
Confidence 3332 23466666665443 67788888899999999999998754 455666773 6666655433223
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCceEEEEecCCC----cchHHH
Q 009444 287 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRY----SGFISM 325 (534)
Q Consensus 287 TAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~----sG~LAl 325 (534)
..++...+. ..+..-.+.|-..+|++ ||-|+.
T Consensus 314 e~i~~f~~~-------l~~~gi~vtvR~~~G~dI~aACGQL~~ 349 (356)
T PRK14462 314 EDMIKFQDY-------LNSKGLLCTIRESKGLDISAACGQLRE 349 (356)
T ss_pred HHHHHHHHH-------HHHCCCcEEEeCCCCCchhhcCccchh
Confidence 333333222 22222347788888875 555544
No 280
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=21.05 E-value=2.8e+02 Score=25.16 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=47.5
Q ss_pred ccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--CC
Q 009444 184 GGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GL 261 (534)
Q Consensus 184 ~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~--g~ 261 (534)
.|..||+-.++.-+++++..++.. .+|.+++++.++++.=++++ ||--=.-..+..|-+.+.++ +.
T Consensus 26 ~GITGFyl~eYkGmSP~~wkgf~l-----------~EDpe~ai~~I~d~s~~aV~-I~TVV~~~~~~~i~~~i~ekL~~e 93 (110)
T PF10126_consen 26 GGITGFYLHEYKGMSPQDWKGFLL-----------DEDPEMAIKAINDLSENAVL-IGTVVDEEKVEKIEKLIKEKLKNE 93 (110)
T ss_pred cCccEEEeEeecCCChHHhcCccc-----------ccCHHHHHHHHHHhccCcEE-EEEEECHHHHHHHHHHHHHHhcCC
Confidence 366677766777777766555421 27899999999998888765 44444455566665555443 44
Q ss_pred ceeEeeecc
Q 009444 262 QVAVAGIPK 270 (534)
Q Consensus 262 ~i~vvgIPk 270 (534)
+-.++.+|-
T Consensus 94 ryTii~iPi 102 (110)
T PF10126_consen 94 RYTIIEIPI 102 (110)
T ss_pred ceEEEEeeE
Confidence 445666663
No 281
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.93 E-value=3.4e+02 Score=30.08 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=58.4
Q ss_pred EEEEccCCCCchhh-HHHHHHHHHHHHhCCCcEEEEEc-ccccccccCC-cccCCHHHHhhHhh-------cCCc--cee
Q 009444 147 ACIVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIE-GGYRGFYSKN-TLTLSPKVVNDIHK-------RGGT--ILR 214 (534)
Q Consensus 147 iaIvtsGG~aPGmN-avIr~iv~~~~~~~~~~~V~Gi~-~G~~GL~~~~-~~~L~~~~V~~i~~-------~GGs--~LG 214 (534)
|+|++ ...+++. .=|.++++.+...++...|+.+. .||.|-.... +.......++.+.. ..++ +||
T Consensus 129 I~V~s--tC~~~lIGDDi~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG 206 (457)
T TIGR01284 129 MYTYA--TCTTALIGDDIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVANITWINDKVGTAEPEITTEYDVNLIG 206 (457)
T ss_pred EEEEC--CChHHhhccCHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHHHHHHHHHhCccCcccCCCCeEEEEc
Confidence 44444 3556543 23555555555445534566664 7888842211 10000011111111 1222 566
Q ss_pred ecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH
Q 009444 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (534)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~ 253 (534)
......|...+.+.|++.||+.+-.+.|+.|+..-..+.
T Consensus 207 ~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~ 245 (457)
T TIGR01284 207 EYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMH 245 (457)
T ss_pred cCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc
Confidence 544456788999999999999998889988776654443
No 282
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=20.82 E-value=4e+02 Score=27.54 Aligned_cols=87 Identities=25% Similarity=0.320 Sum_probs=48.4
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCc-hH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-DT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~-d~ 222 (534)
.++|..+ || .|| |+..+...+...|++.+|.|.++||-.-.+. ...+..|...+=.+|=..=+-+ .-
T Consensus 108 ~~~vfll--Gg-kp~---V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~------~~i~~~I~~s~pdil~VgmG~P~QE 175 (253)
T COG1922 108 GKRVFLL--GG-KPG---VAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE------EAIVERIAASGPDILLVGMGVPRQE 175 (253)
T ss_pred CceEEEe--cC-CHH---HHHHHHHHHHHHCCCceEEEecCCCCChhhH------HHHHHHHHhcCCCEEEEeCCCchhH
Confidence 3566655 33 555 5555566666678999999999998754322 2455566666555543333322 12
Q ss_pred HHHHHHHHHhCCcEEEEEcC
Q 009444 223 NKIVDNIEDRGINQVYIIGG 242 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGG 242 (534)
.=|.++.+.+.....+-+||
T Consensus 176 ~wi~~~~~~~~~~v~igVGg 195 (253)
T COG1922 176 IWIARNRQQLPVAVAIGVGG 195 (253)
T ss_pred HHHHHhHHhcCCceEEeccc
Confidence 23445555555444444444
No 283
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=20.75 E-value=3.1e+02 Score=27.33 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCc--chHHHHHHHHHHHHcCCceeEeeeccccccCccccC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDG--TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdg--S~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD 280 (534)
++.+++++.+.+.+-|++ +|||-. +......+.+.+++ ..++||+.-|.+++.=.++-|
T Consensus 11 e~~~~ia~~v~~~gtDaI-~VGGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~i~~~aD 71 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAI-MVGGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNGLSRYAD 71 (205)
T ss_pred HHHHHHHHHHHhcCCCEE-EEcCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCccccCcCCC
Confidence 356778889999999987 455554 44555556666655 346788888887775444433
No 284
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=20.72 E-value=1e+02 Score=29.05 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=35.5
Q ss_pred HHhCCcEEEEEcCCcchHH---HHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHH
Q 009444 230 EDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (534)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~---A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (534)
...+.|++++-||.++... ...+.+++.+ .++++.|| |+|++..+...-.
T Consensus 39 ~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~--~~~PilGI-------------C~G~Q~la~~~G~ 91 (192)
T PF00117_consen 39 DLDDYDGIIISGGPGSPYDIEGLIELIREARE--RKIPILGI-------------CLGHQILAHALGG 91 (192)
T ss_dssp HTTTSSEEEEECESSSTTSHHHHHHHHHHHHH--TTSEEEEE-------------THHHHHHHHHTTH
T ss_pred hhcCCCEEEECCcCCccccccccccccccccc--cceEEEEE-------------eehhhhhHHhcCC
Confidence 5678999999999998653 3344444444 34678998 9999877655433
No 285
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.69 E-value=6.2e+02 Score=26.71 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=54.6
Q ss_pred EEEEEcCCcchHH-HHHHHHHHHHcCCceeEeeeccccccCc---cccCC-CC---Chhh-----HHHHHHHHHH---HH
Q 009444 236 QVYIIGGDGTQKG-AALIYKEVEKRGLQVAVAGIPKTIDNDI---AVIDK-SF---GFDT-----AVEEAQRAIN---AA 299 (534)
Q Consensus 236 ~LvvIGGdgS~~~-A~~L~e~~~~~g~~i~vvgIPkTIDNDI---~gtD~-S~---GFdT-----Av~~~~~ai~---~i 299 (534)
-++.-||-|.+-. |..|+++++++|.++.++|-++-++.++ .+.++ ++ |+.- -+......+. ++
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDA 83 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 4666677776443 7788888888888888888877777766 12221 22 2221 1111111111 11
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCC
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDV 334 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~a 334 (534)
..-.... +--+|=.+|.+.+.-++.+|...+-+
T Consensus 84 ~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p 116 (352)
T PRK12446 84 YVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVP 116 (352)
T ss_pred HHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCC
Confidence 1112222 23366669999888888888776333
No 286
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=20.63 E-value=2.8e+02 Score=26.04 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=37.9
Q ss_pred CCeeEEEEccCCCCc---hhhHHHHHHHHHHHHhCCCcEEEEEc--------------cc--ccccccC--CcccCCHHH
Q 009444 143 DEVRACIVTCGGLCP---GINTVIREIVCGLSYMYGVDEILGIE--------------GG--YRGFYSK--NTLTLSPKV 201 (534)
Q Consensus 143 ~~~riaIvtsGG~aP---GmNavIr~iv~~~~~~~~~~~V~Gi~--------------~G--~~GL~~~--~~~~L~~~~ 201 (534)
+.++++++.+|+..+ --+.+++.+...+.. .+.+++|.. +| |.||..+ +..+++...
T Consensus 77 ~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~--~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~~~~~~~~~r 154 (167)
T TIGR01752 77 TGKTVALFGLGDQEGYSETFCDGMGILYDKIKA--RGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEER 154 (167)
T ss_pred CCCEEEEEecCCCCcccHHHHHHHHHHHHHHHH--cCCeEEceecCCCcccccchheeCCCEEEEEEecCCCchhhhHHH
Confidence 457899999987542 235567776666643 335677643 33 5566432 235666666
Q ss_pred HhhHhh
Q 009444 202 VNDIHK 207 (534)
Q Consensus 202 V~~i~~ 207 (534)
++.|..
T Consensus 155 ~~~w~~ 160 (167)
T TIGR01752 155 IEKWVE 160 (167)
T ss_pred HHHHHH
Confidence 666643
No 287
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=20.53 E-value=1.6e+02 Score=29.06 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=29.4
Q ss_pred hCCcEEEEEcCCcchHHHH---HHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 232 RGINQVYIIGGDGTQKGAA---LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~---~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
.++|+|++-||.++..... .+.+++.++ ++||.|| |+|++.....
T Consensus 45 ~~~dgliisGGp~~~~~~~~~~~~i~~~~~~--~~PiLGI-------------C~G~Qlla~a 92 (214)
T PRK07765 45 AQFDGVLLSPGPGTPERAGASIDMVRACAAA--GTPLLGV-------------CLGHQAIGVA 92 (214)
T ss_pred cCCCEEEECCCCCChhhcchHHHHHHHHHhC--CCCEEEE-------------ccCHHHHHHH
Confidence 3699999999998754332 233333322 4677887 9998865543
No 288
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.52 E-value=7.7e+02 Score=23.70 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=64.0
Q ss_pred eEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchHHH
Q 009444 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNK 224 (534)
Q Consensus 146 riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~~~ 224 (534)
+||++...-.-|=...++.++-+.+.. ++ .++.- -.+.. .....+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~~~~ 46 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEA-LG-GDLRV--------------------------------YDAGGDDAKQAD 46 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------ECCCCCHHHHHH
Confidence 467777655666667777777666643 22 22221 11111 122346
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc-CCCCChhhHHHHHHHHHHHHHHhh
Q 009444 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHVEV 303 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~~i~~~A 303 (534)
.++.+...++|++++..++.... ..+.+++.++++ +||.+ |++.+.. -.+++.|- .+....+.+.+....
T Consensus 47 ~l~~~~~~~vdgii~~~~~~~~~--~~~i~~~~~~~i--pvV~~----~~~~~~~~~~~V~~d~-~~~g~~~~~~l~~~~ 117 (273)
T cd06305 47 QIDQAIAQKVDAIIIQHGRAEVL--KPWVKRALDAGI--PVVAF----DVDSDNPKVNNTTQDD-YSLARLSLDQLVKDL 117 (273)
T ss_pred HHHHHHHcCCCEEEEecCChhhh--HHHHHHHHHcCC--CEEEe----cCCCCCCccceeeech-HHHHHHHHHHHHHHh
Confidence 66777778999999998764321 122344555564 45544 3333221 12455442 123333444444433
Q ss_pred hhcCCceEEEE
Q 009444 304 ESVENGVGIVK 314 (534)
Q Consensus 304 ~S~~~rv~iVE 314 (534)
..+ ++|.++-
T Consensus 118 ~g~-~~i~~i~ 127 (273)
T cd06305 118 GGK-GNVGYVN 127 (273)
T ss_pred CCC-CCEEEEE
Confidence 444 4687775
No 289
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.45 E-value=6.4e+02 Score=25.07 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCc---------chHHHHHHHHHHHHcCCceeEeeec
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDG---------TQKGAALIYKEVEKRGLQVAVAGIP 269 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdg---------S~~~A~~L~e~~~~~g~~i~vvgIP 269 (534)
.+++.++.++++|++++=+-..+. +...+..|.+.++++|+.++.++.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~ 74 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLS 74 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecc
Confidence 578999999999999986543211 2345778888889999887766544
No 290
>PLN02801 beta-amylase
Probab=20.41 E-value=6.8e+02 Score=28.56 Aligned_cols=101 Identities=20% Similarity=0.289 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhCCcEEEE------Ec--CCc--chHHHHHHHHHHHHcCCceeEee----------------ecccc--
Q 009444 221 DTNKIVDNIEDRGINQVYI------IG--GDG--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI-- 272 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~Lvv------IG--Gdg--S~~~A~~L~e~~~~~g~~i~vvg----------------IPkTI-- 272 (534)
.++.-+..||..|++++.+ += |.+ -..+-.+|++.+++.|+++++|- +|+=+
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~ 117 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRD 117 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHH
Confidence 3566678889999999864 32 333 24566778888888898876652 45443
Q ss_pred ----ccCccccCC---------CCChh--------hHHHHHHHHHHHHHHhhhhcC--CceEEEEecCCCcc
Q 009444 273 ----DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE--NGVGIVKLMGRYSG 321 (534)
Q Consensus 273 ----DNDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~~--~rv~iVEvMGR~sG 321 (534)
|.||..||. |+|.| |+++.+.+.+.+.+++-..-. .-|-=|++=.+-||
T Consensus 118 ~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~~I~eI~VGlGP~G 189 (517)
T PLN02801 118 VGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEAGVIIDIEVGLGPAG 189 (517)
T ss_pred hhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEEcccccc
Confidence 448988884 78888 789999999999888766533 23555565444444
No 291
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=20.37 E-value=8.9e+02 Score=24.37 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
..++++.+...++|++++.+-+... .....+++.+.+ ++||.+
T Consensus 43 q~~~i~~l~~~~vDgIIi~~~~~~~--~~~~l~~~~~~~--iPvV~~ 85 (302)
T TIGR02634 43 QISQIENLIARGVDVLVIIPQNGQV--LSNAVQEAKDEG--IKVVAY 85 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhH--HHHHHHHHHHCC--CeEEEe
Confidence 4578999999999999998765431 122334445555 566654
No 292
>PLN02705 beta-amylase
Probab=20.28 E-value=6.7e+02 Score=29.34 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhCCcEEEE------Ec--CCc--chHHHHHHHHHHHHcCCceeEee----------------eccccc--
Q 009444 222 TNKIVDNIEDRGINQVYI------IG--GDG--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTID-- 273 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~Lvv------IG--Gdg--S~~~A~~L~e~~~~~g~~i~vvg----------------IPkTID-- 273 (534)
++.-+..|+..|++++.+ += |.+ -..+-..|++.+++.|+++.+|. +|+=|-
T Consensus 270 l~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~ 349 (681)
T PLN02705 270 VRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEI 349 (681)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHh
Confidence 566678889999999864 33 333 24566788898999999887762 555433
Q ss_pred ----cCccccCC---------CCChh--------hHHHHHHHHHHHHHHhhhhc--CCceEEEEecCCCcchH
Q 009444 274 ----NDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV--ENGVGIVKLMGRYSGFI 323 (534)
Q Consensus 274 ----NDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~--~~rv~iVEvMGR~sG~L 323 (534)
-||.+||. |+|.| |+++.+.+.+...+++-..- ..-|-=|++=.+-||-|
T Consensus 350 g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GEL 422 (681)
T PLN02705 350 GKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGEL 422 (681)
T ss_pred cccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccc
Confidence 38988884 88888 77899999998888776553 12466677766666654
No 293
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=20.26 E-value=45 Score=36.43 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=37.8
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH--HHHHHHHHHH
Q 009444 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE--AQRAINAAHV 301 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~--~~~ai~~i~~ 301 (534)
..+|.++++|||||.--|..|++- -.+ +|+ ++..-|+||-|-..+ ..+.+..+..
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq~----~VP-PV~----------sFslGslGFLtpf~f~~f~~~l~~v~~ 223 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLFQR----SVP-PVL----------SFSLGSLGFLTPFPFANFQEQLARVLN 223 (409)
T ss_pred cceeEEEEecCCccEEEehhhhcC----CCC-CeE----------EeecCCccccccccHHHHHHHHHHHhc
Confidence 469999999999998888888651 111 222 455669999987544 4666666543
No 294
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.14 E-value=7.8e+02 Score=23.61 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
...++++.+...++|++++.+.+-.
T Consensus 43 ~~~~~i~~l~~~~~dgiii~~~~~~ 67 (265)
T cd06290 43 RELEALELLKSRRVDALILLGGDLP 67 (265)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 3457888899999999999987643
No 295
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=20.11 E-value=93 Score=29.66 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=29.1
Q ss_pred HHHhCCcEEEEEcCCcchHH--HHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 229 IEDRGINQVYIIGGDGTQKG--AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~--A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
+.++++|+||+-||..+... ...+.+.+.+. ++++.|| |+|++.-..
T Consensus 37 ~~~~~~~glii~Gg~~~~~~~~~~~~i~~~~~~--~~PilGI-------------C~G~Qll~~ 85 (188)
T TIGR00888 37 IREKNPKGIILSGGPSSVYAENAPRADEKIFEL--GVPVLGI-------------CYGMQLMAK 85 (188)
T ss_pred HhhcCCCEEEECCCCCCcCcCCchHHHHHHHhC--CCCEEEE-------------CHHHHHHHH
Confidence 34566789999999877442 12232333222 3567777 999987654
No 296
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=20.01 E-value=3.6e+02 Score=27.33 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=26.0
Q ss_pred CCHHHHhhHhhcCCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCC
Q 009444 197 LSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD 243 (534)
Q Consensus 197 L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGd 243 (534)
+....++.+...||.-+--.+...+.+...+.+.. +|+|++.||.
T Consensus 27 ~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~--~DGlil~GG~ 71 (254)
T PRK11366 27 LQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPK--LDGIYLPGSP 71 (254)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHh--CCEEEeCCCC
Confidence 44456777778888644444432222222233333 9999999984
No 297
>PRK02399 hypothetical protein; Provisional
Probab=20.01 E-value=1.4e+02 Score=32.91 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=48.2
Q ss_pred cEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeec--CCC------chHHHHHHHHHH-hCCcEEEEEcCCcchH
Q 009444 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RGG------HDTNKIVDNIED-RGINQVYIIGGDGTQK 247 (534)
Q Consensus 177 ~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs--R~~------~d~~~iv~~l~~-~~Id~LvvIGGdgS~~ 247 (534)
.+++-+.=|..|=-. ...+++.+.|...+..+...+-+. |+. ....+++..|.+ .+|++++-+||-+.-.
T Consensus 31 ~~v~~iDv~~~~~p~-~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~L~~~g~i~gviglGGs~GT~ 109 (406)
T PRK02399 31 LEVVTVDVSGLGEPP-FEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAAFVRELYERGDVAGVIGLGGSGGTA 109 (406)
T ss_pred CceEEEecCCCCCCC-CCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCcchHH
Confidence 567666655443111 113678888877654443333333 432 123455554444 5699999999988543
Q ss_pred HHHHHHHHHHHcCCceeEeeecccc
Q 009444 248 GAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 248 ~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
-+... ++ .++ +|+||=|
T Consensus 110 lat~a---Mr--~LP---iG~PKlm 126 (406)
T PRK02399 110 LATPA---MR--ALP---IGVPKLM 126 (406)
T ss_pred HHHHH---HH--hCC---CCCCeEE
Confidence 33332 22 354 7888855
Done!