Query 009444
Match_columns 534
No_of_seqs 318 out of 1544
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 5E-103 2E-107 841.1 31.6 425 68-504 16-455 (487)
2 1zxx_A 6-phosphofructokinase; 100.0 1.8E-87 6.2E-92 690.0 32.4 303 145-490 2-310 (319)
3 1pfk_A Phosphofructokinase; tr 100.0 2.2E-87 7.6E-92 689.6 31.5 308 145-495 3-317 (320)
4 3hno_A Pyrophosphate-dependent 100.0 4.3E-87 1.5E-91 709.2 30.8 331 144-487 3-364 (419)
5 4a3s_A 6-phosphofructokinase; 100.0 3.5E-86 1.2E-90 681.4 30.5 310 145-497 2-317 (319)
6 3o8l_A 6-phosphofructokinase, 100.0 4.4E-87 1.5E-91 748.7 23.6 400 70-499 315-748 (762)
7 3o8o_A 6-phosphofructokinase s 100.0 1.7E-86 5.8E-91 744.4 25.4 402 70-500 305-766 (787)
8 3o8o_B 6-phosphofructokinase s 100.0 1.3E-86 4.5E-91 745.2 22.7 398 70-499 305-755 (766)
9 3opy_B 6-phosphofructo-1-kinas 100.0 1.9E-86 6.6E-91 751.7 23.3 401 70-499 483-931 (941)
10 2f48_A Diphosphate--fructose-6 100.0 2.6E-85 9.1E-90 715.2 29.7 410 80-498 11-516 (555)
11 3opy_A 6-phosphofructo-1-kinas 100.0 6.6E-85 2.3E-89 737.5 24.8 401 70-499 510-976 (989)
12 3o8l_A 6-phosphofructokinase, 100.0 1.9E-82 6.4E-87 711.3 26.2 346 143-516 14-389 (762)
13 3o8o_A 6-phosphofructokinase s 100.0 6.3E-80 2.2E-84 691.3 27.9 347 142-517 3-380 (787)
14 3o8o_B 6-phosphofructokinase s 100.0 2.1E-79 7.3E-84 687.0 32.1 346 144-517 3-380 (766)
15 3opy_A 6-phosphofructo-1-kinas 100.0 3.3E-79 1.1E-83 691.1 29.6 346 143-517 209-585 (989)
16 3opy_B 6-phosphofructo-1-kinas 100.0 3.4E-79 1.2E-83 692.6 27.8 346 143-516 180-557 (941)
17 2an1_A Putative kinase; struct 94.8 0.032 1.1E-06 55.5 5.8 111 145-301 6-118 (292)
18 2i2c_A Probable inorganic poly 92.7 0.053 1.8E-06 53.8 2.9 65 223-300 18-91 (272)
19 1z0s_A Probable inorganic poly 90.8 0.089 3E-06 52.9 2.1 64 222-301 42-122 (278)
20 3g1w_A Sugar ABC transporter; 88.8 16 0.00056 34.7 16.7 174 143-363 3-185 (305)
21 3kjx_A Transcriptional regulat 88.8 17 0.00057 35.7 17.0 85 144-268 68-153 (344)
22 3h5o_A Transcriptional regulat 86.7 21 0.00071 34.9 16.2 85 144-268 62-147 (339)
23 3dbi_A Sugar-binding transcrip 85.3 19 0.00064 35.1 15.0 124 144-314 61-188 (338)
24 3l49_A ABC sugar (ribose) tran 84.8 21 0.00071 33.6 14.7 128 143-313 4-131 (291)
25 1yt5_A Inorganic polyphosphate 84.1 0.25 8.4E-06 48.6 0.6 53 232-300 40-94 (258)
26 3o74_A Fructose transport syst 80.0 38 0.0013 31.4 16.7 166 145-362 3-176 (272)
27 3s4y_A Thiamin pyrophosphokina 79.0 12 0.00042 36.6 10.7 99 137-245 13-134 (247)
28 3e3m_A Transcriptional regulat 74.9 48 0.0016 32.6 14.0 85 144-268 70-155 (355)
29 3pfn_A NAD kinase; structural 74.1 1.6 5.5E-05 45.4 2.9 129 137-301 31-163 (365)
30 2qv7_A Diacylglycerol kinase D 73.6 5.4 0.00019 40.1 6.7 53 222-277 69-121 (337)
31 3egc_A Putative ribose operon 72.5 64 0.0022 30.3 15.7 125 143-314 7-132 (291)
32 1u0t_A Inorganic polyphosphate 72.4 1.1 3.8E-05 45.0 1.2 34 231-269 73-106 (307)
33 2bon_A Lipid kinase; DAG kinas 72.1 12 0.00041 37.6 8.8 53 222-277 71-125 (332)
34 3k4h_A Putative transcriptiona 71.2 51 0.0018 30.8 12.8 123 143-315 7-139 (292)
35 3tb6_A Arabinose metabolism tr 70.1 68 0.0023 30.0 13.3 129 144-316 15-146 (298)
36 3gbv_A Putative LACI-family tr 68.5 78 0.0027 29.6 16.4 183 143-372 7-209 (304)
37 3qk7_A Transcriptional regulat 67.7 73 0.0025 30.1 13.1 123 144-316 6-135 (294)
38 3m9w_A D-xylose-binding peripl 67.6 86 0.0029 29.8 15.5 172 144-363 2-185 (313)
39 3afo_A NADH kinase POS5; alpha 67.5 1.5 5.1E-05 46.0 1.0 54 232-300 113-169 (388)
40 3l8m_A Probable thiamine pyrop 65.9 17 0.00059 34.5 8.0 69 176-245 22-101 (212)
41 1jq5_A Glycerol dehydrogenase; 63.4 9.7 0.00033 38.8 6.1 55 220-284 73-127 (370)
42 3kke_A LACI family transcripti 62.2 71 0.0024 30.4 11.9 121 144-314 15-138 (303)
43 3h75_A Periplasmic sugar-bindi 61.6 1.2E+02 0.0041 29.4 15.6 29 144-172 3-32 (350)
44 3lup_A DEGV family protein; PS 61.2 1.2E+02 0.0042 29.8 13.6 172 143-338 2-195 (285)
45 3s40_A Diacylglycerol kinase; 61.1 11 0.00038 37.3 6.0 54 220-277 51-104 (304)
46 3k94_A Thiamin pyrophosphokina 60.5 44 0.0015 32.0 9.9 69 177-245 25-104 (223)
47 3lm8_A Thiamine pyrophosphokin 60.5 50 0.0017 31.6 10.2 79 177-255 26-120 (222)
48 3uug_A Multiple sugar-binding 56.9 1.4E+02 0.0046 28.5 13.6 103 143-286 2-107 (330)
49 3k9c_A Transcriptional regulat 56.9 1.3E+02 0.0044 28.3 14.0 120 144-315 12-134 (289)
50 3lkb_A Probable branched-chain 56.6 43 0.0015 33.1 9.5 103 158-269 125-231 (392)
51 3rot_A ABC sugar transporter, 54.9 85 0.0029 29.7 10.9 88 144-268 3-92 (297)
52 2vk2_A YTFQ, ABC transporter p 54.1 1.5E+02 0.005 28.1 13.4 86 144-268 2-89 (306)
53 3d8u_A PURR transcriptional re 53.0 1.4E+02 0.0048 27.5 15.4 123 145-315 4-128 (275)
54 1oj7_A Hypothetical oxidoreduc 51.8 12 0.00042 38.8 4.6 54 220-273 93-162 (408)
55 3uhj_A Probable glycerol dehyd 50.8 15 0.00052 38.0 5.1 47 220-271 93-139 (387)
56 3ox4_A Alcohol dehydrogenase 2 50.1 18 0.00061 37.3 5.5 57 220-276 75-144 (383)
57 3iv7_A Alcohol dehydrogenase I 48.9 17 0.00059 37.3 5.1 50 220-275 75-124 (364)
58 3clh_A 3-dehydroquinate syntha 48.9 6.9 0.00023 39.8 2.1 50 220-272 69-121 (343)
59 3e61_A Putative transcriptiona 47.8 82 0.0028 29.2 9.4 121 144-314 8-129 (277)
60 3hl0_A Maleylacetate reductase 47.4 23 0.00079 36.1 5.8 48 220-272 74-121 (353)
61 1rrm_A Lactaldehyde reductase; 46.9 21 0.00071 36.6 5.4 54 220-273 75-143 (386)
62 3jzd_A Iron-containing alcohol 46.8 19 0.00066 36.8 5.1 48 220-272 76-123 (358)
63 3clk_A Transcription regulator 46.2 1.7E+02 0.0058 27.3 11.5 123 144-314 8-132 (290)
64 2dri_A D-ribose-binding protei 46.1 1.8E+02 0.0063 26.8 11.8 126 145-314 2-130 (271)
65 3okf_A 3-dehydroquinate syntha 44.9 7.1 0.00024 40.8 1.5 63 220-288 107-172 (390)
66 3gyb_A Transcriptional regulat 44.7 1.9E+02 0.0066 26.6 12.7 68 143-245 4-71 (280)
67 1o2d_A Alcohol dehydrogenase, 44.6 13 0.00043 38.2 3.3 58 220-277 85-155 (371)
68 8abp_A L-arabinose-binding pro 44.3 1.8E+02 0.0061 27.2 11.3 87 144-268 2-88 (306)
69 2o20_A Catabolite control prot 44.0 2.2E+02 0.0077 27.2 15.6 86 143-268 62-148 (332)
70 3bfj_A 1,3-propanediol oxidore 42.7 28 0.00097 35.6 5.6 54 220-273 79-145 (387)
71 3huu_A Transcription regulator 42.7 2.1E+02 0.0073 26.9 11.7 85 144-268 22-112 (305)
72 2pbq_A Molybdenum cofactor bio 42.3 20 0.00067 33.1 3.9 52 193-245 21-80 (178)
73 3l6u_A ABC-type sugar transpor 41.9 2.2E+02 0.0074 26.4 13.0 89 143-268 7-95 (293)
74 3rf7_A Iron-containing alcohol 41.5 25 0.00085 36.4 4.9 56 220-275 93-164 (375)
75 1x60_A Sporulation-specific N- 40.9 55 0.0019 25.4 5.9 51 213-263 14-73 (79)
76 3nyi_A FAT acid-binding protei 39.5 83 0.0029 31.2 8.3 110 195-316 44-171 (297)
77 3ipc_A ABC transporter, substr 39.4 72 0.0025 30.8 7.8 104 157-269 119-226 (356)
78 3brq_A HTH-type transcriptiona 39.3 2.3E+02 0.008 26.1 14.0 124 143-315 18-147 (296)
79 3o1i_D Periplasmic protein TOR 38.7 1.9E+02 0.0064 27.0 10.4 70 143-245 4-75 (304)
80 2gru_A 2-deoxy-scyllo-inosose 38.6 28 0.00095 35.6 4.8 64 220-289 78-144 (368)
81 2qip_A Protein of unknown func 37.5 55 0.0019 29.3 6.1 50 220-272 94-145 (165)
82 1ujn_A Dehydroquinate synthase 37.4 13 0.00044 37.9 2.0 50 220-272 68-120 (348)
83 1vlj_A NADH-dependent butanol 37.2 26 0.00091 36.2 4.4 54 220-273 88-154 (407)
84 3miz_A Putative transcriptiona 36.8 82 0.0028 29.8 7.6 68 144-245 13-82 (301)
85 1dbq_A Purine repressor; trans 36.7 2.6E+02 0.0088 25.8 14.0 121 144-314 7-133 (289)
86 3ihk_A Thiamin pyrophosphokina 36.4 90 0.0031 29.6 7.7 85 148-245 4-100 (218)
87 2omk_A Hypothetical protein; s 36.1 2.3E+02 0.0079 27.1 10.6 105 148-263 34-153 (231)
88 3td9_A Branched chain amino ac 36.1 2.2E+02 0.0077 27.4 10.8 106 157-269 130-237 (366)
89 2rgy_A Transcriptional regulat 35.9 2.7E+02 0.0093 25.9 15.3 122 144-315 8-136 (290)
90 3vnd_A TSA, tryptophan synthas 35.0 1.7E+02 0.0058 28.7 9.6 139 222-375 5-160 (267)
91 1uta_A FTSN, MSGA, cell divisi 34.9 56 0.0019 25.7 5.1 52 213-264 14-74 (81)
92 3s81_A Putative aspartate race 34.8 70 0.0024 31.3 6.8 43 220-268 86-128 (268)
93 3nav_A Tryptophan synthase alp 34.7 2E+02 0.0068 28.3 10.1 137 222-374 7-161 (271)
94 2yxb_A Coenzyme B12-dependent 34.0 1.4E+02 0.0047 26.7 8.2 88 143-245 17-110 (161)
95 1xah_A Sadhqs, 3-dehydroquinat 33.4 43 0.0015 33.9 5.2 50 220-272 74-126 (354)
96 3lkv_A Uncharacterized conserv 33.1 3.3E+02 0.011 26.0 14.6 73 142-242 6-78 (302)
97 2hsg_A Glucose-resistance amyl 32.2 2.3E+02 0.0077 27.2 10.0 122 144-315 60-185 (332)
98 3g85_A Transcriptional regulat 32.0 68 0.0023 30.0 6.0 123 143-315 10-135 (289)
99 3bil_A Probable LACI-family tr 32.0 3.6E+02 0.012 26.1 18.6 85 144-268 66-151 (348)
100 3cqj_A L-ribulose-5-phosphate 31.2 2.3E+02 0.0079 26.7 9.8 52 219-270 29-89 (295)
101 2lnd_A De novo designed protei 30.9 1.2E+02 0.0042 24.9 6.4 58 204-262 22-79 (112)
102 3ors_A N5-carboxyaminoimidazol 30.8 77 0.0026 29.3 5.8 90 212-327 37-132 (163)
103 3apt_A Methylenetetrahydrofola 30.8 48 0.0016 33.3 4.9 88 178-269 44-150 (310)
104 1kq3_A Glycerol dehydrogenase; 30.8 22 0.00075 36.3 2.4 53 221-284 83-135 (376)
105 1usg_A Leucine-specific bindin 30.3 2.2E+02 0.0077 26.9 9.6 62 204-268 161-225 (346)
106 4evq_A Putative ABC transporte 29.7 1.7E+02 0.0059 28.2 8.8 100 159-268 135-238 (375)
107 3ksm_A ABC-type sugar transpor 29.5 3.2E+02 0.011 24.8 12.5 89 145-268 1-90 (276)
108 1ta9_A Glycerol dehydrogenase; 28.6 22 0.00074 37.7 2.0 56 221-287 134-189 (450)
109 3fst_A 5,10-methylenetetrahydr 28.5 1.6E+02 0.0053 29.6 8.2 101 163-269 41-153 (304)
110 3ce9_A Glycerol dehydrogenase; 27.9 30 0.001 34.9 2.9 50 221-276 77-126 (354)
111 3gv0_A Transcriptional regulat 27.9 3.7E+02 0.013 24.9 13.4 123 143-314 7-134 (288)
112 3mel_A Thiamin pyrophosphokina 27.0 92 0.0032 29.7 6.0 90 147-245 3-104 (222)
113 3eaf_A ABC transporter, substr 27.0 3.6E+02 0.012 26.3 10.7 106 157-270 122-233 (391)
114 3kuu_A Phosphoribosylaminoimid 26.9 94 0.0032 29.0 5.7 53 212-271 46-99 (174)
115 2fvy_A D-galactose-binding per 26.9 3.4E+02 0.012 25.2 10.0 87 145-268 3-90 (309)
116 1fa2_A Beta-amylase; TIM barre 26.6 2.5E+02 0.0086 30.2 9.6 97 221-317 35-182 (498)
117 2x7x_A Sensor protein; transfe 26.2 4.3E+02 0.015 25.1 12.2 126 143-314 5-135 (325)
118 1pzx_A Hypothetical protein AP 26.2 2.5E+02 0.0087 27.5 9.2 61 195-257 43-108 (289)
119 2rjo_A Twin-arginine transloca 26.0 2.8E+02 0.0095 26.5 9.5 91 143-271 4-97 (332)
120 1iv0_A Hypothetical protein; r 25.5 55 0.0019 27.4 3.6 29 248-276 39-67 (98)
121 3lp6_A Phosphoribosylaminoimid 25.5 84 0.0029 29.3 5.1 54 212-272 41-95 (174)
122 4b4k_A N5-carboxyaminoimidazol 25.5 57 0.002 30.6 4.0 10 261-270 99-108 (181)
123 3jy6_A Transcriptional regulat 25.3 4E+02 0.014 24.4 21.5 126 142-317 5-133 (276)
124 1vdr_A DHFR, dihydrofolate red 24.6 25 0.00087 31.5 1.4 51 221-278 81-131 (162)
125 3brs_A Periplasmic binding pro 24.1 3.7E+02 0.013 24.7 9.7 70 143-245 4-77 (289)
126 1wdp_A Beta-amylase; (beta/alp 23.6 3E+02 0.01 29.7 9.5 97 221-317 34-181 (495)
127 1sg6_A Pentafunctional AROM po 23.1 62 0.0021 33.3 4.2 50 220-272 87-141 (393)
128 3trh_A Phosphoribosylaminoimid 22.9 94 0.0032 28.9 4.9 53 212-271 40-93 (169)
129 2nrr_A Uvrabc system protein C 22.8 2.4E+02 0.0081 25.9 7.5 86 219-308 60-153 (159)
130 3uhf_A Glutamate racemase; str 22.8 1.6E+02 0.0053 29.1 6.9 98 136-268 16-116 (274)
131 3oow_A Phosphoribosylaminoimid 22.8 78 0.0027 29.3 4.3 53 213-272 40-93 (166)
132 2g0t_A Conserved hypothetical 22.7 6.2E+02 0.021 25.7 14.7 134 202-339 136-279 (350)
133 1cz3_A Dihydrofolate reductase 22.7 33 0.0011 30.7 1.8 48 220-274 80-129 (168)
134 3c3k_A Alanine racemase; struc 22.4 4.6E+02 0.016 24.2 13.1 121 144-315 8-132 (285)
135 3jr7_A Uncharacterized EGV fam 22.3 3.5E+02 0.012 26.7 9.5 147 145-316 20-183 (298)
136 2qru_A Uncharacterized protein 22.2 2.1E+02 0.0071 26.6 7.4 42 284-329 73-115 (274)
137 3bbl_A Regulatory protein of L 22.1 4.7E+02 0.016 24.1 14.1 123 144-315 4-133 (287)
138 2fep_A Catabolite control prot 22.0 4.8E+02 0.016 24.2 14.7 124 143-315 15-141 (289)
139 4af0_A Inosine-5'-monophosphat 21.6 3.2E+02 0.011 29.9 9.4 103 222-340 309-413 (556)
140 3fij_A LIN1909 protein; 11172J 21.0 4.3E+02 0.015 24.9 9.6 45 196-244 28-72 (254)
141 3mjf_A Phosphoribosylamine--gl 20.7 1.7E+02 0.0059 30.1 7.0 39 143-189 2-40 (431)
142 1ccw_A Protein (glutamate muta 20.7 4E+02 0.014 22.8 8.5 85 145-244 4-94 (137)
143 3gh1_A Predicted nucleotide-bi 20.5 2.9E+02 0.01 29.5 8.6 20 235-254 249-269 (462)
144 1xmp_A PURE, phosphoribosylami 20.0 86 0.003 29.1 4.0 51 214-271 47-98 (170)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=4.6e-103 Score=841.05 Aligned_cols=425 Identities=39% Similarity=0.648 Sum_probs=384.3
Q ss_pred CCCcccccccchhhcCCCC--CCCCCCCCCCcccccccccccccChHHHHHHHhccCC-------CCcccccccCCcccc
Q 009444 68 NDGFVLEDVPHLTNFLPDL--PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-------PRGVHFRRAGPREKV 138 (534)
Q Consensus 68 ~~~~~~eav~~l~~~~P~~--p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-------~r~~~F~~ag~r~~~ 138 (534)
.-.+.++.|+.+.-..|.+ |++++||..|.. ...||.+++.|+..+....+. .....|+++|||+++
T Consensus 16 ~~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i 91 (487)
T 2hig_A 16 AHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRI 91 (487)
T ss_dssp CTTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEE
T ss_pred cccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCccee
Confidence 3557888888886666655 778899976654 588999999998765432221 123479999999999
Q ss_pred ccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEccccccccc---CCcccCCHHHHhhHhhcCCcceee
Q 009444 139 YFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRT 215 (534)
Q Consensus 139 ~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---~~~~~L~~~~V~~i~~~GGs~LGT 215 (534)
||+++.+||||+||||||||||+|||++|+++...|+..+||||++||+||++ +++++|+|++|++|+++|||+|||
T Consensus 92 ~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGT 171 (487)
T 2hig_A 92 HFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGS 171 (487)
T ss_dssp SSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCC
T ss_pred eecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeecc
Confidence 99999999999999999999999999999999766676799999999999964 689999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHH
Q 009444 216 SRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (534)
Q Consensus 216 sR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~a 295 (534)
+|++++.++++++|++++||+||+||||||+++|++|++++.+++++|+||||||||||||++||+|||||||+++++++
T Consensus 172 sR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~ea 251 (487)
T 2hig_A 172 SRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQA 251 (487)
T ss_dssp CCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhCCcEEEEEeCCCC
Q 009444 296 INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAG 375 (534)
Q Consensus 296 i~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~~~~vIVvaEGa~ 375 (534)
|+++++||.||++||||||||||+|||||+++|||+++||+|||||+||+++ ++++.|++|+++++|+|||||||++
T Consensus 252 Id~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag 328 (487)
T 2hig_A 252 IRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFG 328 (487)
T ss_dssp HHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTT
T ss_pred HHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCc
Confidence 9999999999978999999999999999999999993399999999999987 8999999999888999999999998
Q ss_pred chhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeE---EeeeeeCCCccccCCCCChhhHHHHHHHHHHHH
Q 009444 376 QEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMM---INMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAV 452 (534)
Q Consensus 376 ~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~---~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV 452 (534)
+.++.. ...+|++||+++++++.+|+++|+++++.. ... +++|+++|||+|||++||++||+||++||..||
T Consensus 329 ~~~~~~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~~-g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV 403 (487)
T 2hig_A 329 QDWGRG----SGGYDASGNKKLIDIGVILTEKVKAFLKAN-KSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAV 403 (487)
T ss_dssp GGGCCC------CBCTTSCBCCCCHHHHHHHHHHHHHHTT-TTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred cccccc----ccccccccCcchhHHHHHHHHHHHHHHhhc-CccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHH
Confidence 765432 235899999999999999999999988421 112 378999999999999999999999999999999
Q ss_pred HHHHcCCCceEEEEeCCeeeeeeHHHHhhhcCCCCCCHHHHHHHHHhcCCCC
Q 009444 453 HGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPS 504 (534)
Q Consensus 453 ~~~~~G~tg~mvgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l~~t~qp~ 504 (534)
+++++|+||+||++++++++++||++++...|++++++.||.++++.++||.
T Consensus 404 ~~l~~G~tg~mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~ 455 (487)
T 2hig_A 404 HEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG 455 (487)
T ss_dssp HHHHTTEESEEEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred HHHHcCCCCEEEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999987
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=1.8e-87 Score=690.01 Aligned_cols=303 Identities=28% Similarity=0.382 Sum_probs=283.5
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCc----
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~---- 220 (534)
+||||+||||||||||++||++|+.+.. + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA-N-GLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT-T-TCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 4999999999999999999999999864 4 469999999999999999999999999999999999999999863
Q ss_pred -hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 221 -d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999874 47899999999999999999999999999999999999
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCchh
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (534)
+++|.||+ ||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++++++ ++|+|||||||+.+
T Consensus 154 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 226 (319)
T 1zxx_A 154 RDTASSHH-RVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMT-- 226 (319)
T ss_dssp HHHHHHTT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCC--
T ss_pred HHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcCh--
Confidence 99999975 89999999999999999999999 899999999999977 899999999865 68999999999842
Q ss_pred hcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 009444 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (534)
Q Consensus 379 ~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G 458 (534)
+.+|+++|+++++ +++|+.+|||+|||++|+++||+||++||..||+++++|
T Consensus 227 ----------------------~~~l~~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (319)
T 1zxx_A 227 ----------------------ADQFMAELKKYGD------FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEG 278 (319)
T ss_dssp ----------------------HHHHHHHHHHSSC------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHhhC------ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4678999988754 578899999999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHhhhcCCCCCCH
Q 009444 459 FTGFTVGPVNSRHAYIPIARVTETQKTVKLTD 490 (534)
Q Consensus 459 ~tg~mvgi~~~~~~~iPl~~v~~~~k~v~~~~ 490 (534)
++|+||++++++++++||+++++..|+++++.
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~~k~~~~~~ 310 (319)
T 1zxx_A 279 KGGLAVGIENGKVTSHDILDLFDESHRGDYDL 310 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHTTCCCCCCTHH
T ss_pred CCCEEEEEECCEEEEEEHHHHHhcCCCCCHHH
Confidence 99999999999999999999999989886643
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=2.2e-87 Score=689.62 Aligned_cols=308 Identities=27% Similarity=0.379 Sum_probs=284.8
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCc----
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~---- 220 (534)
+||||+||||||||||++||++|+.+.+ + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-E-GLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 4999999999999999999999999864 4 479999999999999999999999999999999999999999863
Q ss_pred -hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 221 -d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999873 57899999999999999999999999999999999999
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCchh
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (534)
+++|+||+ ||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++++++ ++|+|||||||+..
T Consensus 155 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 227 (320)
T 1pfk_A 155 RDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD-- 227 (320)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSSC--
T ss_pred HHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcch--
Confidence 99999985 89999999999999999999999 899999999999977 899999999865 68999999999841
Q ss_pred hcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 009444 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (534)
Q Consensus 379 ~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G 458 (534)
+.+|+++|+++++ +++|+..|||+|||++|+++||+||++||..||+++++|
T Consensus 228 ----------------------~~~la~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 279 (320)
T 1pfk_A 228 ----------------------VDELAHFIEKETG------RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAG 279 (320)
T ss_dssp ----------------------HHHHHHHHHHHHS------SCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHhC------CeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4678899988765 567889999999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHh-hhcCCCCCCHHHHHH
Q 009444 459 FTGFTVGPVNSRHAYIPIARVT-ETQKTVKLTDRMWAR 495 (534)
Q Consensus 459 ~tg~mvgi~~~~~~~iPl~~v~-~~~k~v~~~~~~w~~ 495 (534)
++|+||++++++++++||++++ .+.|+++++...+.+
T Consensus 280 ~~g~mv~~~~~~~~~~pl~~~~~~~~k~~~~~~~~~~~ 317 (320)
T 1pfk_A 280 YGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAK 317 (320)
T ss_dssp CCSEEEEEETTEEEEEEHHHHHHHCCCCCCHHHHHHHH
T ss_pred CCCEEEEEECCEEEEEEHHHHHhhCCCCCCHHHHHHHH
Confidence 9999999999999999999999 888888754444333
No 4
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=4.3e-87 Score=709.18 Aligned_cols=331 Identities=19% Similarity=0.277 Sum_probs=288.9
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCC-CcEEEEEcccccccccCCcccC---CHHHHhhHhhcCCcceeecCCC
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYG-VDEILGIEGGYRGFYSKNTLTL---SPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~-~~~V~Gi~~G~~GL~~~~~~~L---~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
+.||+|+||||||||||++||++|+.+..... ..+||||++||+||+++++++| +|.+|++|+++|||+|||||++
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~~ 82 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRYK 82 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCCC
Confidence 45999999999999999999999998875321 2399999999999999998877 6669999999999999999975
Q ss_pred c--------hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHH
Q 009444 220 H--------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (534)
Q Consensus 220 ~--------d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (534)
. ++++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||||||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~~ 162 (419)
T 3hno_A 83 LKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKY 162 (419)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHHH
Confidence 3 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCC---ceEEEEecCCCcchHHHHHhhhc----CCCcEEecCCCCCCCCChhhHHHHHHHHHHhCC
Q 009444 292 AQRAINAAHVEVESVEN---GVGIVKLMGRYSGFISMYATLAS----RDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (534)
Q Consensus 292 ~~~ai~~i~~~A~S~~~---rv~iVEvMGR~sG~LAl~aaLAs----~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~~ 364 (534)
++++|+++..++.++++ ||||||||||+|||||+++|||+ .+||+|||||+||+++ ++++.|++++++++
T Consensus 163 ~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~~~~~ 239 (419)
T 3hno_A 163 IAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFG 239 (419)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHHHhCC
Confidence 99999998655555444 89999999999999999999993 2899999999999887 89999999998889
Q ss_pred cEEEEEeCCCCc---hhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCC--CChh
Q 009444 365 HMVIVVAEGAGQ---EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP--SNGS 439 (534)
Q Consensus 365 ~~vIVvaEGa~~---~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~--p~a~ 439 (534)
|+|||||||+.+ +++.+ ...+|++||++|++++.+|+++|+++++ +++|+++|||+|||++ ||++
T Consensus 240 ~~iIvVaEG~~~~~g~~i~~----~~~~D~~G~~~l~gi~~~la~~i~~~~g------~~~R~~~lGh~QRgg~p~ps~~ 309 (419)
T 3hno_A 240 YCSVVVSEGVKGDDGKFLSD----QGVRDAFGHAQLGGVAPVVASMVKEGLG------LKYHWGVADYLQRAARHIASKT 309 (419)
T ss_dssp CEEEEEETTCCCSSSCC-------------------CCSHHHHHHHHHHHHC------CCEEEEECTHHHHSCGGGCBHH
T ss_pred CEEEEEeCCCcccCCcchhc----ccccccccCcccCcHHHHHHHHHHHHhC------CceEEcccchhhccCCCCCCHH
Confidence 999999999975 33332 2458999999999999999999999986 4678899999999999 8999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCceEEEEeCC-------eeeeeeHHHHhhhcCCCC
Q 009444 440 DNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIARVTETQKTVK 487 (534)
Q Consensus 440 Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPl~~v~~~~k~v~ 487 (534)
||+||++||..||+++++|++|+||+++++ ++..+||+++++..|.|+
T Consensus 310 Dr~la~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v~ 364 (419)
T 3hno_A 310 DVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMMP 364 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCCC
Confidence 999999999999999999999999999986 699999999999888775
No 5
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=3.5e-86 Score=681.43 Aligned_cols=310 Identities=30% Similarity=0.440 Sum_probs=284.0
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-----
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~----- 219 (534)
+|||||||||||||||++||++|+.+.+ .+.+||||++||+||+++++++|+|++|++|+++|||+|||||++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~~--~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAIY--HDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 4899999999999999999999998864 457999999999999999999999999999999999999999984
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i 299 (534)
++.++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999863 47799999999999999999999999999999999999
Q ss_pred HHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCchh
Q 009444 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (534)
+++|+|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++++++ ++|++||||||+.+.
T Consensus 154 ~~~a~s~-~rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~~- 227 (319)
T 4a3s_A 154 RDTATSH-ERTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGSG- 227 (319)
T ss_dssp HHHHHHH-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCCH-
T ss_pred Hhhhhcc-CCeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCcc-
Confidence 9999987 579999999999999999999999 899999999999887 899999988877 689999999999642
Q ss_pred hcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 009444 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (534)
Q Consensus 379 ~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G 458 (534)
.++++.++++++ +++|+.+|||+|||++|+++||++|++||..||+++++|
T Consensus 228 -----------------------~~~~~~~~~~~g------~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G 278 (319)
T 4a3s_A 228 -----------------------VEFGKRIEEETN------LETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEG 278 (319)
T ss_dssp -----------------------HHHHHHHHHHHC------CCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------------hHHHHHHHHhCC------ceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 346777777765 467889999999999999999999999999999999999
Q ss_pred CCceEEEEeCCeeeeeeHHHHhhhcCCCCCCHHHHHHHH
Q 009444 459 FTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLL 497 (534)
Q Consensus 459 ~tg~mvgi~~~~~~~iPl~~v~~~~k~v~~~~~~w~~~l 497 (534)
+||+||++++++++++||+++++.+|+|+++.....+.|
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~a~~l 317 (319)
T 4a3s_A 279 KGGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSKEL 317 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHSSSCCCCCHHHHHHHHHH
T ss_pred CCCeEEEEECCEEEEEeHHHHHhccCCCCHHHHHHHHhc
Confidence 999999999999999999999999999987544444443
No 6
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=4.4e-87 Score=748.70 Aligned_cols=400 Identities=19% Similarity=0.235 Sum_probs=353.1
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Ccc
Q 009444 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PRE 136 (534)
Q Consensus 70 ~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------~r~ 136 (534)
.+..+||.++++..|+++.+++.+.+|+++++|++++++.++.|..+++ +++| +|+.+|.+++ ++.
T Consensus 315 ~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~-~~~~~~a~~~rg~~f~~~~~~~~~~~~~~~ 393 (762)
T 3o8l_A 315 RMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMD-EKRFDEAMKLRGRSFMNNWEVYKLLAHIRP 393 (762)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHH-SSCHHHHHHHHCTHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhc-cchHHHHHHhhCchHHHHHHHHHHhcCCCC
Confidence 5678999999999999999999999999999999999999999999988 6776 5888998755 211
Q ss_pred ccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeec
Q 009444 137 KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS 216 (534)
Q Consensus 137 ~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs 216 (534)
... ..+++||||+||||||||||++||++|+.+.. .+++||||++||+||+++++++|+|++|++|+++|||+|||+
T Consensus 394 ~~~-~~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTs 470 (762)
T 3o8l_A 394 PAP-KSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSK 470 (762)
T ss_dssp CCC-CSSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEE
T ss_pred ccc-cccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecC
Confidence 111 14678999999999999999999999998864 357999999999999999999999999999999999999999
Q ss_pred CCC--chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CceeEeeeccccccCccccCCCCChhhHHHHHH
Q 009444 217 RGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (534)
Q Consensus 217 R~~--~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 293 (534)
|+. +++++++++|++++||+||+||||||+++|++|++++.+++ ++|+|||||||||||+++||+|||||||+++++
T Consensus 471 R~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 471 RTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTIC 550 (762)
T ss_dssp CCCSGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHH
Confidence 985 47999999999999999999999999999999999988875 589999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhC-CcEEEEEeC
Q 009444 294 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-GHMVIVVAE 372 (534)
Q Consensus 294 ~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~-~~~vIVvaE 372 (534)
++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||++++..+.++++.+|+++. +++||||||
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaE 629 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNE 629 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEET
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 99999999998777899999999999999999999999 8999999999999985555566677777654 678999999
Q ss_pred CCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHH
Q 009444 373 GAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAV 452 (534)
Q Consensus 373 Ga~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV 452 (534)
|+...+. ++++++.++++.+ ..+++|...|||+||||.|+++||++|++||.+||
T Consensus 630 ga~~~~~---------------------~~~~~~~~~~~~~----~~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av 684 (762)
T 3o8l_A 630 KCNENYT---------------------TDFIFNLYSEEGK----GIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAM 684 (762)
T ss_dssp TSCSSSC---------------------HHHHHHHHHHHTT----TTCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCccch---------------------HHHHHHHHHhhcc----CCceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHH
Confidence 9965432 2456666665421 12678888999999999999999999999999999
Q ss_pred HHHHcC---------------CCceEEEEeCCeeeeeeHHHHhhhc--CCCCCCHHHHHHHHHh
Q 009444 453 HGAMAG---------------FTGFTVGPVNSRHAYIPIARVTETQ--KTVKLTDRMWARLLAS 499 (534)
Q Consensus 453 ~~~~~G---------------~tg~mvgi~~~~~~~iPl~~v~~~~--k~v~~~~~~w~~~l~~ 499 (534)
+++++| .+++|||+++++++++||+++.++. ++..|+..||..+...
T Consensus 685 ~~l~~g~~~~~~~g~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~~~~ 748 (762)
T 3o8l_A 685 NWMAGKIKESYRNGRIFANTPDSGCVLGMRKRALVFQPVTELQNQTDFEHRIPKEQWWLKLRPI 748 (762)
T ss_dssp HHHHHHHHTTBCSSSBCCCSSTTEEEEEEETTEEEEEEHHHHGGGEETTTTEESSCGGGGTHHH
T ss_pred HHHHhCccccccccccccccCCceEEEEEECCEEEEEEHHHHhhccchhhcCCCCchHHhHHHH
Confidence 999987 7999999999999999999998753 3344888899887655
No 7
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-86 Score=744.37 Aligned_cols=402 Identities=17% Similarity=0.195 Sum_probs=350.4
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc-
Q 009444 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (534)
Q Consensus 70 ~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------~r- 135 (534)
.+.++||.+|++..+++|.+++.+.+|+++++|++++|..++.|.++|+ +|+| +|+++|++++ ++
T Consensus 305 rlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 383 (787)
T 3o8o_A 305 LQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIE-NKDFDKAISLRDTEFIELYENFLSTTVKDD 383 (787)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-cCCHHHHHhccCHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999999999999999999 8888 7999999876 11
Q ss_pred cccccC-CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccc-cCCcccCCHHHHhhHhhcCCcce
Q 009444 136 EKVYFK-SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (534)
Q Consensus 136 ~~~~f~-~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~V~~i~~~GGs~L 213 (534)
.+...+ .+++||||+||||||||||++||++|+++.. .+++||||++||+||+ ++++++|+|.+|++|+++|||+|
T Consensus 384 ~~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~L 461 (787)
T 3o8o_A 384 GSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEI 461 (787)
T ss_dssp SCSCCCSSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTT
T ss_pred ccccCCcccCcEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCcee
Confidence 111122 3468999999999999999999999998864 3579999999999999 89999999999999999999999
Q ss_pred eecCCCc--hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CceeEeeeccccccCccccCCCCChhhHHH
Q 009444 214 RTSRGGH--DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 214 GTsR~~~--d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
||+|+.+ +.++++++|++++||+||+||||||+++|++|++++.+++ +.|+||||||||||||++||+|||||||++
T Consensus 462 GTsR~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~ 541 (787)
T 3o8o_A 462 GTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLN 541 (787)
T ss_dssp CCBCCCGGGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHH
T ss_pred ccCCCCchhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHH
Confidence 9999853 7899999999999999999999999999999999876553 579999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh---C--Cc
Q 009444 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE---N--GH 365 (534)
Q Consensus 291 ~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~---~--~~ 365 (534)
+++++||+|+++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.....++++.++++. + .+
T Consensus 542 ~~~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~~~~~~i~~~~~~~~~~~g~~~~~ 620 (787)
T 3o8o_A 542 ALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNG 620 (787)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHHHHHHHHHHHHHHHHHCCSCSSCC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 99999999999998877899999999999999999999999 899999999999988433333334445542 2 34
Q ss_pred EEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHH
Q 009444 366 MVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCT 445 (534)
Q Consensus 366 ~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~ 445 (534)
.+|+++||+...+. +.+|++.|+++++. .+++|...|||+|||+.|+++||++|+
T Consensus 621 ~iivvaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAt 675 (787)
T 3o8o_A 621 KLLVRNEQASSVYS---------------------TQLLADIISEASKG----KFGVRTAIPGHVQQGGVPSSKDRVTAS 675 (787)
T ss_dssp EEEEEETTSCSSSC---------------------HHHHHHHHHHHHTT----SSEEEEEBCGGGGGCSSCCHHHHHHHH
T ss_pred eEEEEeCCccCCCC---------------------HHHHHHHHHHHhCC----CceeEEecccccccCCCCCHHHHHHHH
Confidence 89999999854321 46788888887541 257888999999999999999999999
Q ss_pred HHHHHHHHHHHcCC---------------------------------CceEEEEeCCeeeeeeHHHHhhhc---CCCCCC
Q 009444 446 LLAHSAVHGAMAGF---------------------------------TGFTVGPVNSRHAYIPIARVTETQ---KTVKLT 489 (534)
Q Consensus 446 ~LG~~AV~~~~~G~---------------------------------tg~mvgi~~~~~~~iPl~~v~~~~---k~v~~~ 489 (534)
+||.+||+++++|. +++|+|++++++++.||+++.+.. ++..|+
T Consensus 676 r~G~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~ 755 (787)
T 3o8o_A 676 RFAVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGF 755 (787)
T ss_dssp HHHHHHHHHHHHHHHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBS
T ss_pred HHHHHHHHHHHhCcccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCc
Confidence 99999999998866 689999999999999999988543 334588
Q ss_pred HHHHHHHHHhc
Q 009444 490 DRMWARLLAST 500 (534)
Q Consensus 490 ~~~w~~~l~~t 500 (534)
..||..+....
T Consensus 756 ~~~w~~~~~~~ 766 (787)
T 3o8o_A 756 EVHWAEYNKIG 766 (787)
T ss_dssp CCCCHHHHHHH
T ss_pred ChHHHhHHHHH
Confidence 89999987763
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-86 Score=745.18 Aligned_cols=398 Identities=21% Similarity=0.204 Sum_probs=349.2
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc-
Q 009444 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (534)
Q Consensus 70 ~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------~r- 135 (534)
.+.++||.+|++..+++|.+++.+++|+++++|++++|..++.|.++|+ +|+| +|+++|++++ ++
T Consensus 305 ~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 383 (766)
T 3o8o_B 305 LQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQ-AKDFKRAMSLRDTEFIEHLNNFMAINSADH 383 (766)
T ss_dssp HHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCc
Confidence 5789999999999999999999999999999999999999999999999 8898 6999999877 11
Q ss_pred cccccC-CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEccccccccc-CCcccCCHHHHhhHhhcCCcce
Q 009444 136 EKVYFK-SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS-KNTLTLSPKVVNDIHKRGGTIL 213 (534)
Q Consensus 136 ~~~~f~-~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~-~~~~~L~~~~V~~i~~~GGs~L 213 (534)
.+...+ .+.+||||+||||||||||++||++|+++.. + +++||||++||+||++ +++.+|+|.+|++|+++|||+|
T Consensus 384 ~~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~L 461 (766)
T 3o8o_B 384 NEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMS-Q-GHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEI 461 (766)
T ss_dssp STTCSSSSCCCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTT
T ss_pred ccccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceE
Confidence 111122 2358999999999999999999999998864 3 4799999999999997 7899999999999999999999
Q ss_pred eecCCC---chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CceeEeeeccccccCccccCCCCChhhHH
Q 009444 214 RTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (534)
Q Consensus 214 GTsR~~---~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (534)
||+|+. .++++++++|++++||+||+||||||+++|++|+++++++. +.|+||||||||||||++||+|||||||+
T Consensus 462 GTsR~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~ 541 (766)
T 3o8o_B 462 GTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTAL 541 (766)
T ss_dssp CCCCCCGGGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHH
T ss_pred ccCCCCCccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHH
Confidence 999984 36889999999999999999999999999999998665443 56899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHH---HHHH--h--
Q 009444 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE---RQLK--E-- 362 (534)
Q Consensus 290 ~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~---~rl~--~-- 362 (534)
++++++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++ ++++.|+ ++++ +
T Consensus 542 ~~~~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~---~~~~~i~~~~~~~~~~~~~ 617 (766)
T 3o8o_B 542 NALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLE---QLSEDIEYLAQSFEKAEGR 617 (766)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHH---HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhcc
Confidence 999999999999999877899999999999999999999999 899999999999988 5555554 4443 1
Q ss_pred -CCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhH
Q 009444 363 -NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDN 441 (534)
Q Consensus 363 -~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr 441 (534)
+.+.+|+++||+...+. +.+|++.|+++.+. .+++|...|||+|||+.|+++||
T Consensus 618 ~~~~~iivvaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR 672 (766)
T 3o8o_B 618 GRFGKLILKSTNASKALS---------------------ATKLAEVITAEADG----RFDAKPAYPGHVQQGGLPSPIDR 672 (766)
T ss_dssp TTCCEEEEEEGGGCSSCC---------------------HHHHHHHHHHHHTT----SCEEEEEBCGGGGGCSSCCHHHH
T ss_pred CCCceEEEEeCCcCCCCc---------------------HHHHHHHHHHHhCC----CceEEEecccccccCCCCCHHHH
Confidence 35689999999854322 46788888877531 26788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCC----------------------CceEEEEeCCeeeeeeHHHHhhhc---CCCCCCHHHHHHH
Q 009444 442 IYCTLLAHSAVHGAMAGF----------------------TGFTVGPVNSRHAYIPIARVTETQ---KTVKLTDRMWARL 496 (534)
Q Consensus 442 ~~a~~LG~~AV~~~~~G~----------------------tg~mvgi~~~~~~~iPl~~v~~~~---k~v~~~~~~w~~~ 496 (534)
++|++||.+||+++++|. +++|||+++++++++||+++.+.. ++..|+..||..+
T Consensus 673 ~lAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~ 752 (766)
T 3o8o_B 673 TRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQAT 752 (766)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhH
Confidence 999999999999999999 899999999999999999988542 3445888899988
Q ss_pred HHh
Q 009444 497 LAS 499 (534)
Q Consensus 497 l~~ 499 (534)
...
T Consensus 753 ~~~ 755 (766)
T 3o8o_B 753 RLI 755 (766)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 9
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.9e-86 Score=751.75 Aligned_cols=401 Identities=18% Similarity=0.184 Sum_probs=348.0
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc-
Q 009444 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (534)
Q Consensus 70 ~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------~r- 135 (534)
.+.++||.++++..+++|.+++.+.+|+++++|++++|..++.|.++|+ +|+| +|+++|++++ ++
T Consensus 483 rlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~-~~~f~~a~~lr~~~f~~~~~~~~~~~~~~~ 561 (941)
T 3opy_B 483 LQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIE-SRNFKKAISLRDSEFVEHMKNFISTNSADH 561 (941)
T ss_dssp HHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999999999999999999 8888 6999999876 11
Q ss_pred ccccc-CCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccc-cCCcccCCHHHHhhHhhcCCcce
Q 009444 136 EKVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (534)
Q Consensus 136 ~~~~f-~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~V~~i~~~GGs~L 213 (534)
.+... +.+++||||+||||||||||++||++|+.+.. .+++||||++||+||+ ++++++|+|.+|++|+++|||+|
T Consensus 562 ~~~~~~~~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiL 639 (941)
T 3opy_B 562 VPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEI 639 (941)
T ss_dssp SCCSSCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSS
T ss_pred ccccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEe
Confidence 11112 23568999999999999999999999998864 3579999999999999 79999999999999999999999
Q ss_pred eecCCC---chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CceeEeeeccccccCccccCCCCChhhHH
Q 009444 214 RTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (534)
Q Consensus 214 GTsR~~---~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (534)
||+|+. .+.++++++|++++||+||+||||||+++|++|++++++++ +.|+|||||||||||+++||+|||||||+
T Consensus 640 GTsR~~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~ 719 (941)
T 3opy_B 640 GTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCL 719 (941)
T ss_dssp CEECCCTTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHH
T ss_pred ccCCCCcccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHH
Confidence 999974 26889999999999999999999999999999998765543 57899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-----CC
Q 009444 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-----NG 364 (534)
Q Consensus 290 ~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-----~~ 364 (534)
++++++||+|+++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++...+.+++++++++. +.
T Consensus 720 ~~i~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~~l~~~i~~l~~~~~~~~g~~~~ 798 (941)
T 3opy_B 720 NSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKS 798 (941)
T ss_dssp HHHHHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHTCTTSCCC
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 999999999999999877899999999999999999999999 899999999999988433334444455642 23
Q ss_pred cEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHH
Q 009444 365 HMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYC 444 (534)
Q Consensus 365 ~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a 444 (534)
+.+|++|||+...+. +.+|++.|+++++. .+++|...|||+||||.|+++||++|
T Consensus 799 ~~iIvvaEga~~~~~---------------------~~~la~~i~~~~~~----g~e~R~tvLGHiQRGG~Psa~DRilA 853 (941)
T 3opy_B 799 GRLILKSENASKVLT---------------------TEVISTIIDDEASG----RFDSKTAIPGHVQQGGIPSPMDRVRA 853 (941)
T ss_dssp CEEEEEEGGGCSSSC---------------------HHHHHHHHHHHHTT----SSEEEEECCCTTTTCSSCCHHHHHHH
T ss_pred ceEEEEeCCccCCCC---------------------HHHHHHHHHHHhCC----CceeEEccccccccCCCCCHHHHHHH
Confidence 589999999864321 46788888887541 25788899999999999999999999
Q ss_pred HHHHHHHHHHHHcCC--------------------CceEEEEeCCeeeeeeHHHHhhhc---CCCCCCHHHHHHHHHh
Q 009444 445 TLLAHSAVHGAMAGF--------------------TGFTVGPVNSRHAYIPIARVTETQ---KTVKLTDRMWARLLAS 499 (534)
Q Consensus 445 ~~LG~~AV~~~~~G~--------------------tg~mvgi~~~~~~~iPl~~v~~~~---k~v~~~~~~w~~~l~~ 499 (534)
++||.+||+++++|. +++|||+++++++++||+++.+.. ++..|+..||..+...
T Consensus 854 tr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~~~ 931 (941)
T 3opy_B 854 SRFAIRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVREI 931 (941)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHHHH
Confidence 999999999999998 899999999999999999988643 3345888899988765
No 10
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=2.6e-85 Score=715.17 Aligned_cols=410 Identities=22% Similarity=0.345 Sum_probs=330.9
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccCC
Q 009444 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCGG 154 (534)
Q Consensus 80 ~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~ag~r~~~~f~~~~~riaIvtsGG 154 (534)
++|.|.+|.. |++- ......+..+.++.+...-++.+.|| +..+|.++.++.+ .++.+||||+||||
T Consensus 11 ~~~~p~lp~~---l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~igIltsGG 82 (555)
T 2f48_A 11 QKYIPKLPNI---LKKD--FNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS---FSKALNIGIILSGG 82 (555)
T ss_dssp TTCCCCCCGG---GGSC--GGGEEEEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCCCS---CCSCCEEEEEEBSS
T ss_pred hcCCCCCCHH---HhCC--ccceeeecCCcccCccCHHHHHHhCccccCCCcEEEecCCcccc---cCCCcEEEEECcCC
Confidence 4789999986 6541 10122334444544444333345553 5567887655311 35668999999999
Q ss_pred CCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCC-cceeecCCCc----hHHHHHHHH
Q 009444 155 LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGH----DTNKIVDNI 229 (534)
Q Consensus 155 ~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GG-s~LGTsR~~~----d~~~iv~~l 229 (534)
||||||++||++|+++...+++.+||||++||+||+++++++|+|++|++|+++|| |+|||+|++. ++++++++|
T Consensus 83 daPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~l 162 (555)
T 2f48_A 83 PAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVA 162 (555)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999976667888999999999999999999999999999999999 7999999853 578999999
Q ss_pred HHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc--CCCCChhhHHHHHHHHHHHHHHhhhhcC
Q 009444 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHVEVESVE 307 (534)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~ai~~i~~~A~S~~ 307 (534)
++++||+||+||||||+++|++|++++++++++|+|||||||||||+++| |+|||||||+++++++|++++.||.|++
T Consensus 163 ~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~~ 242 (555)
T 2f48_A 163 KENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTK 242 (555)
T ss_dssp HHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999887 9999999999999999999999999998
Q ss_pred CceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCC----CCCCC-hhhHHHHHHHHHHh-CCcEEEEEeCCCCch----
Q 009444 308 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP----FYLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQE---- 377 (534)
Q Consensus 308 ~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~p----f~le~-~~~l~e~I~~rl~~-~~~~vIVvaEGa~~~---- 377 (534)
+||||||||||+|||||++||||+ +||+|||||+| +++++ .+.+++.|++|..+ ++|+|||||||+...
T Consensus 243 ~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~~~~ 321 (555)
T 2f48_A 243 KYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEV 321 (555)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHHH
T ss_pred CcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccccchH
Confidence 899999999999999999999999 89999999987 44432 23455666666554 689999999999521
Q ss_pred --h--------------------------hcc---------------cCCc--c---ccccccCCcchhhh--HHHHHHH
Q 009444 378 --F--------------------------VAQ---------------SMPA--V---DEKDASGNRLLLDI--GLWLTQK 407 (534)
Q Consensus 378 --~--------------------------~~~---------------~l~~--~---~~~Da~Gn~~l~~i--g~~L~~~ 407 (534)
+ +.+ .++. . ..+|++||++|+++ +++|++.
T Consensus 322 ~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~~ 401 (555)
T 2f48_A 322 KSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEM 401 (555)
T ss_dssp HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHHH
T ss_pred HHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHHHH
Confidence 1 000 0000 0 25799999999988 4555555
Q ss_pred HHhhccccce-----eEEeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEeCCe-------eeeee
Q 009444 408 IKDHFTKVQK-----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSR-------HAYIP 475 (534)
Q Consensus 408 I~e~~~~~~~-----~~~~~k~i~pgy~qRg~~p~a~Dr~~a~~LG~~AV~~~~~G~tg~mvgi~~~~-------~~~iP 475 (534)
|+++++...+ ..++.+...|||+|||+.|+++||+||++||+.||+++++|+||+||+++|++ +..+|
T Consensus 402 v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~vP 481 (555)
T 2f48_A 402 IQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVP 481 (555)
T ss_dssp HHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEEE
T ss_pred HHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEeee
Confidence 5555432111 12566777899999999999999999999999999999999999999999976 88999
Q ss_pred HHHHhhhc------------CCCCCCHHHHHHHHH
Q 009444 476 IARVTETQ------------KTVKLTDRMWARLLA 498 (534)
Q Consensus 476 l~~v~~~~------------k~v~~~~~~w~~~l~ 498 (534)
|.++++.. ..|+.++..|..+.+
T Consensus 482 l~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~~~ 516 (555)
T 2f48_A 482 LTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVK 516 (555)
T ss_dssp GGGGEEEEEETTEEEEEECCCCCCTTSHHHHHHHH
T ss_pred HHHHhhhhhhcCccccceeeeeeCCCCHHHHHHHH
Confidence 99988743 456777777755444
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=6.6e-85 Score=737.53 Aligned_cols=401 Identities=18% Similarity=0.225 Sum_probs=346.0
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Ccc
Q 009444 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PRE 136 (534)
Q Consensus 70 ~~~~eav~~l~~~~P~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------~r~ 136 (534)
.+.++||.++++..|+++.+++.+.+|+++++|+++++..++.|.++|. +|+| +|+++|++++ +..
T Consensus 510 rlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~-~k~f~~a~~lr~~~F~~~~~~~~~~~~~~~ 588 (989)
T 3opy_A 510 VQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIE-AKDFDKALQLRDQEFATSYENFLSVSKYDD 588 (989)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-ccCHHHHHhccChHHHHHHHHHHHhccCCC
Confidence 5779999999999999999999999999999999999999999999999 8888 7999999876 111
Q ss_pred -cccc-CCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccc-cCCcccCCHHHHhhHhhcCCcce
Q 009444 137 -KVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (534)
Q Consensus 137 -~~~f-~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~V~~i~~~GGs~L 213 (534)
+... +++++||||+||||||||||++||++|+++.. .+++||||++||+||+ ++++++|+|.+|++|+++|||+|
T Consensus 589 ~~~~~p~~~~~rIgIltsGGdaPGmNAaIravV~~a~~--~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiL 666 (989)
T 3opy_A 589 GSYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLA--KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEI 666 (989)
T ss_dssp SSSCCCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSS
T ss_pred ccccCCccCCceEEEEecCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEe
Confidence 1111 23568999999999999999999999998864 4579999999999999 99999999999999999999999
Q ss_pred eecCCC--chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CceeEeeeccccccCccccCCCCChhhHHH
Q 009444 214 RTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 214 GTsR~~--~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
||+|+. +++++++++|++++||+||+||||||+++|++|++++.+++ ++|+||||||||||||++||+|||||||++
T Consensus 667 GTsR~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn 746 (989)
T 3opy_A 667 GTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLN 746 (989)
T ss_dssp CCBCCCGGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH
T ss_pred ccCCCCchhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHH
Confidence 999985 47899999999999999999999999999999998766553 578999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-----CCc
Q 009444 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-----NGH 365 (534)
Q Consensus 291 ~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~-----~~~ 365 (534)
+++++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++...+.+++++++++. +.+
T Consensus 747 ~~~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~~l~~~i~~l~~~~~~~~g~~~~~ 825 (989)
T 3opy_A 747 TLSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSG 825 (989)
T ss_dssp HHHHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHHHHHHHHHHHHHHHTTCC---CCC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999877899999999999999999999999 899999999999988433333444455532 246
Q ss_pred EEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCChhhHHHHH
Q 009444 366 MVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCT 445 (534)
Q Consensus 366 ~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~Dr~~a~ 445 (534)
+|||||||+...+. +.+|+++|+++.+. .+++|...|||+||||.|+++||++|+
T Consensus 826 ~IIvvaEga~~~~~---------------------~~~la~~i~e~~~~----~~e~R~tvLGHiQRGG~Psa~DRilAt 880 (989)
T 3opy_A 826 KIFIHNEKASKVYT---------------------TDLIAAIIGEAGKG----RFESRTAVPGHVQQGKSPSSIDRVNAC 880 (989)
T ss_dssp EEEEEESSSCSSSC---------------------HHHHHHHHHHTTTT----TSCEEEECCGGGGGCSSCCHHHHHHHH
T ss_pred eEEEEeCCCcCCCC---------------------HHHHHHHHHHhcCC----CceeEecccccccCCCCCCHHHHHHHH
Confidence 79999999864321 46789999887532 257888999999999999999999999
Q ss_pred HHHHHHHHHHHcCC---------------------------------------CceEEEEeCCeeeeeeHHHHhhhc---
Q 009444 446 LLAHSAVHGAMAGF---------------------------------------TGFTVGPVNSRHAYIPIARVTETQ--- 483 (534)
Q Consensus 446 ~LG~~AV~~~~~G~---------------------------------------tg~mvgi~~~~~~~iPl~~v~~~~--- 483 (534)
+||.+||++++++. +..++|++++++.+.|+.++.+..
T Consensus 881 r~G~~Ave~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~ 960 (989)
T 3opy_A 881 RLAIKCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHH 960 (989)
T ss_dssp HHHHHHHHHHTCGGGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTT
T ss_pred HHHHHHHHHHHccccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccch
Confidence 99999999999866 356999999999999999996432
Q ss_pred CCCCCCHHHHHHHHHh
Q 009444 484 KTVKLTDRMWARLLAS 499 (534)
Q Consensus 484 k~v~~~~~~w~~~l~~ 499 (534)
++..|+..||..+...
T Consensus 961 ~~r~p~~~~W~~~~~~ 976 (989)
T 3opy_A 961 KWRKGKNVHWEQLNIV 976 (989)
T ss_dssp TC----CCCCHHHHHH
T ss_pred hhCCCcChHHHhHHHH
Confidence 3344888899998765
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=1.9e-82 Score=711.34 Aligned_cols=346 Identities=21% Similarity=0.324 Sum_probs=313.8
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CcccCCHHHHhhHhhcCCcceeecCCCc
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~~ 220 (534)
+.+||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 45799999999999999999999999875 3567999999999999999 8999999999999999999999999863
Q ss_pred -----hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHH-----------------HHHcCCceeEeeeccccccCccc
Q 009444 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278 (534)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~-----------------~~~~g~~i~vvgIPkTIDNDI~g 278 (534)
++++++++|++++||+||+||||||+++|+.|+++ +.+++..++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 57899999999999999999999999999988653 33456789999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHH
Q 009444 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 358 (534)
Q Consensus 279 tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~ 358 (534)
||+|||||||+++++++|++++++|.||+ ||||||||||+|||||+++|||+ +||+|||||+||++++++.+++.|++
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~-Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~ 249 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSE 249 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSSC-CEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcCc-cEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999975 79999999999999999999999 89999999999999888899999998
Q ss_pred HHHh-CCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCCC
Q 009444 359 QLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSN 437 (534)
Q Consensus 359 rl~~-~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~ 437 (534)
+.++ ++|+|||||||+. |++||+.. +.+|++.|+++++ ++.|+..|||+|||++|+
T Consensus 250 ~~~~gk~~~iVvVaEGa~--------------d~~G~~i~---~~~l~~~i~~~~g------~~~R~tvLGh~QRgg~Ps 306 (762)
T 3o8l_A 250 TRTRGSRLNIIIVAEGAI--------------DRNGKPIT---SEGVKDLVVRRLG------YDTRVTVLGHVQRGGTPS 306 (762)
T ss_dssp HHHTTCSCCBBCEETTCC--------------CSSSCCCC---HHHHHHHHHHHTC------CCEEEECCCSSTTCSCCC
T ss_pred HHHcCCCceEEEEeCCcc--------------CCCCCCcH---HHHHHHHHHHHhC------CCcceeecCccccCCCCC
Confidence 7665 4689999999984 56777765 4679999998876 467788999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC---CceEEEEeCCeeeeeeHHHHhhhcCCCCC--CHHHHHHHHHhcCCCCCCChhhHh
Q 009444 438 GSDNIYCTLLAHSAVHGAMAGF---TGFTVGPVNSRHAYIPIARVTETQKTVKL--TDRMWARLLASTNQPSFLNCSEVL 512 (534)
Q Consensus 438 a~Dr~~a~~LG~~AV~~~~~G~---tg~mvgi~~~~~~~iPl~~v~~~~k~v~~--~~~~w~~~l~~t~qp~f~~~~~~~ 512 (534)
++||++|++||.+||+++++|. +++||++++++++++||.+++...|.|++ +..+|.+.+..+|| +|..+-+.+
T Consensus 307 a~Dr~lat~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg~-~f~~~~~~~ 385 (762)
T 3o8l_A 307 AFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRGR-SFMNNWEVY 385 (762)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhCc-hHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999888875 56789999999996 598877777
Q ss_pred hhhh
Q 009444 513 HHQE 516 (534)
Q Consensus 513 ~~~~ 516 (534)
....
T Consensus 386 ~~~~ 389 (762)
T 3o8l_A 386 KLLA 389 (762)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-80 Score=691.30 Aligned_cols=347 Identities=21% Similarity=0.315 Sum_probs=300.5
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CcccCCHHHHhhHhhcCCcceeecCCC
Q 009444 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 142 ~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
.+++||||+||||||||||+|||++|+.+.+ + +.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|++
T Consensus 3 ~~~krIgIltsGGdaPGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~ 80 (787)
T 3o8o_A 3 QKKKKIAVMTSGGDSPGMNAAVRAVVRTGIH-F-GCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSM 80 (787)
T ss_dssp --CCEEEEEEESSCCTTHHHHHHHHHHHHHH-T-TCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCS
T ss_pred CCCcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCC
Confidence 3467999999999999999999999998864 4 57999999999999998 689999999999999999999999986
Q ss_pred c-----hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHH-------H----------HHcCCceeEeeeccccccCcc
Q 009444 220 H-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-------V----------EKRGLQVAVAGIPKTIDNDIA 277 (534)
Q Consensus 220 ~-----d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~-------~----------~~~g~~i~vvgIPkTIDNDI~ 277 (534)
+ +..+++++|++++||+||+||||||+++|++|+++ + .+++..++|||||||||||++
T Consensus 81 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 81 EFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp GGGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 3 36789999999999999999999999999987642 2 223567999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCCh-hhHHHHH
Q 009444 278 VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP-GGLFEFI 356 (534)
Q Consensus 278 gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~-~~l~e~I 356 (534)
+||+|||||||+++++++||+++++|.|| +||||||||||+|||||+++|||+ +||+|||||+||++++. +.+++.+
T Consensus 161 gTD~TiGfdTAl~~i~eaid~i~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i 238 (787)
T 3o8o_A 161 GTDSTIGAYSALERICEMVDYIDATAKSH-SRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVC 238 (787)
T ss_dssp TSSCCEEHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999996 579999999999999999999999 89999999999999742 3344444
Q ss_pred HHHHHh-CCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCC
Q 009444 357 ERQLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP 435 (534)
Q Consensus 357 ~~rl~~-~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~ 435 (534)
+++..+ ++|+|||||||+.+.. |+... +..+++.|++ ++ +++|...|||+|||++
T Consensus 239 ~~~~~~gk~~~IVvVaEGa~~~~--------------~~~~~---~~~~~~~i~~-~g------~~~R~tvLGh~QRGG~ 294 (787)
T 3o8o_A 239 QRHRSKGRRNNTIIVAEGALDDQ--------------LNPVT---ANDVKDALIE-LG------LDTKVTILGHVQRGGT 294 (787)
T ss_dssp HHHHHTTCCCEEEEEETTCBBTT--------------SCBCC---HHHHHHHHHH-HT------CCEEEEECGGGGTCSC
T ss_pred HHHHhcCCCceEEEEeCCCcccc--------------Ccchh---HHHHHHHHHH-hC------CcceeeccCHhhcCCC
Confidence 444333 5789999999996532 22211 3457777777 54 4677788999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHhhhcCCCC--CCHHHHHHHHHhcCCCCCCChhh
Q 009444 436 SNGSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSE 510 (534)
Q Consensus 436 p~a~Dr~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~t~qp~f~~~~~ 510 (534)
|+++||++|++||.+||+++++|.+ |+||++++++++++||++++.+.|.|. .+...|.+.++..| ++|..+-+
T Consensus 295 Psa~DRilAtrlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~ 373 (787)
T 3o8o_A 295 AVAHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLRD-TEFIELYE 373 (787)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-TTHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhccC-HHHHHHHH
Confidence 9999999999999999999999997 799999999999999999999888887 67789999999975 89999988
Q ss_pred Hhhhhhh
Q 009444 511 VLHHQEK 517 (534)
Q Consensus 511 ~~~~~~~ 517 (534)
.|.....
T Consensus 374 ~~~~~~~ 380 (787)
T 3o8o_A 374 NFLSTTV 380 (787)
T ss_dssp HHHHHHT
T ss_pred HHHHhcc
Confidence 8876643
No 14
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-79 Score=686.95 Aligned_cols=346 Identities=20% Similarity=0.302 Sum_probs=301.6
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCC---cccCCHHHHhhHhhcCCcceeecCCCc
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGGH 220 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~---~~~L~~~~V~~i~~~GGs~LGTsR~~~ 220 (534)
++||||+||||||||||++||++|+.+.+ + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF-K-GCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 46999999999999999999999998864 3 469999999999999986 679999999999999999999999863
Q ss_pred -----hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHH-----------------HHHcCCceeEeeeccccccCccc
Q 009444 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278 (534)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~-----------------~~~~g~~i~vvgIPkTIDNDI~g 278 (534)
+..+++++|++++||+||+||||||+++|++|+++ ..+++..++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 36789999999999999999999999999988653 33445678999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-hhhHHHHHH
Q 009444 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGLFEFIE 357 (534)
Q Consensus 279 tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~-~~~l~e~I~ 357 (534)
||+|||||||+++++++|++++++|.||+ ||||||||||+|||||+++|||+ +||+|||||.||++++ .+.+++.++
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~-RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 238 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSHS-RAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVS 238 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTTHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhccC-ceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999974 79999999999999999999999 8999999999999873 223444444
Q ss_pred HHHHh-CCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCC
Q 009444 358 RQLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPS 436 (534)
Q Consensus 358 ~rl~~-~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p 436 (534)
++.++ ++|+|||||||+.+.. |+.. .+.+|++.|+++++ +++|+..|||+|||+.|
T Consensus 239 ~~~~~gk~~~IVvVaEGa~~~~--------------~~~~---~~~~l~~~i~~~~g------~~~R~tvLGh~QRGG~P 295 (766)
T 3o8o_B 239 KHRSRGKRTTIVVVAEGAIAAD--------------LTPI---SPSDVHKVLVDRLG------LDTRITTLGHVQRGGTA 295 (766)
T ss_dssp HHHHTTCCCEEEEEETTCBCTT--------------SCBC---CHHHHHHHHHHTTC------CCEEEEECGGGGTCSCC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------CCcc---hHHHHHHHHHHHhC------CceeEcccChhhcCCCC
Confidence 44333 5789999999996432 2221 14678888888765 56788899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHhhhcCCCC--CCHHHHHHHHHhcCCCCCCChhhH
Q 009444 437 NGSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEV 511 (534)
Q Consensus 437 ~a~Dr~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~t~qp~f~~~~~~ 511 (534)
+++||++|++||.+||+++++|.+ |+||++++++++++||++++.+.|.|. .+...|.+.++..| ++|..+-+.
T Consensus 296 sa~DR~lAt~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~~ 374 (766)
T 3o8o_B 296 VAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKRAMSLRD-TEFIEHLNN 374 (766)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-TTHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhcCCHHHHHHccC-HHHHHHHHH
Confidence 999999999999999999999997 899999999999999999999888876 55678999999975 899999888
Q ss_pred hhhhhh
Q 009444 512 LHHQEK 517 (534)
Q Consensus 512 ~~~~~~ 517 (534)
|.....
T Consensus 375 ~~~~~~ 380 (766)
T 3o8o_B 375 FMAINS 380 (766)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 876543
No 15
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.3e-79 Score=691.10 Aligned_cols=346 Identities=21% Similarity=0.308 Sum_probs=299.6
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CcccCCHHHHhhHhhcCCcceeecCCCc
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~V~~i~~~GGs~LGTsR~~~ 220 (534)
..+||||+||||||||||+|||++|+.+.. + +.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~~-~-G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGIF-Y-GCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 457999999999999999999999998864 4 57999999999999998 5889999999999999999999999853
Q ss_pred -----hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHH-----------------HHcCCceeEeeeccccccCccc
Q 009444 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV-----------------EKRGLQVAVAGIPKTIDNDIAV 278 (534)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~-----------------~~~g~~i~vvgIPkTIDNDI~g 278 (534)
++.+++++|++++||+||+||||||+++|++|++++ .+.+..++|||||||||||+++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 478999999999999999999999999999987542 2234678999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhh-HHHHHH
Q 009444 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGG-LFEFIE 357 (534)
Q Consensus 279 tD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~-l~e~I~ 357 (534)
||+|||||||+++++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||+||++++..+ +.+.++
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~Sh-~RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCCT-TEEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999986 579999999999999999999999 8999999999999875333 333333
Q ss_pred HHHHh-CCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCCC
Q 009444 358 RQLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPS 436 (534)
Q Consensus 358 ~rl~~-~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p 436 (534)
++.++ ++|+|||||||+.+.. |+... +..+++.|++ ++ +++|...|||+|||++|
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~~~--------------~~~i~---~~~l~~~l~~-~G------~dtR~tvLGHiQRGG~P 500 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAIDDQ--------------LNPIT---SEEVKDVLVE-IG------LDTRITRLGHVQRGGAP 500 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBCTT--------------SCBCC---HHHHHHHHHT-TT------CEEEEEECGGGGGCSCC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------cccch---HHHHHHHHHH-hC------cchhhhhhhHHHcCCCC
Confidence 33333 4689999999996432 22111 3456777775 44 56788899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHhhhcCCCC--CCHHHHHHHHHhcCCCCCCChhhH
Q 009444 437 NGSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSEV 511 (534)
Q Consensus 437 ~a~Dr~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~t~qp~f~~~~~~ 511 (534)
+++||++|++||.+||+++++|.+ |+|||+++++++++||++++.+.|.|. .+...|.+.++..| ++|..+-+.
T Consensus 501 sa~DRilAtrlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~lr~-~~F~~~~~~ 579 (989)
T 3opy_A 501 CAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQLRD-QEFATSYEN 579 (989)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-HHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhccC-hHHHHHHHH
Confidence 999999999999999999999985 899999999999999999999988887 67789999999975 899998887
Q ss_pred hhhhhh
Q 009444 512 LHHQEK 517 (534)
Q Consensus 512 ~~~~~~ 517 (534)
+.....
T Consensus 580 ~~~~~~ 585 (989)
T 3opy_A 580 FLSVSK 585 (989)
T ss_dssp HHHHHG
T ss_pred HHHhcc
Confidence 776543
No 16
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.4e-79 Score=692.57 Aligned_cols=346 Identities=21% Similarity=0.310 Sum_probs=301.7
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCC---cccCCHHHHhhHhhcCCcceeecCCC
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~---~~~L~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
..+||||+||||||||||++||++|+.+.. + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|++
T Consensus 180 ~~krIgIlTsGGdaPGmNAaIRaVVr~a~~-~-g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~ 257 (941)
T 3opy_B 180 VRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-K-GCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCK 257 (941)
T ss_dssp CCCCEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCS
T ss_pred cCCEEEEEeeCcCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCC
Confidence 367999999999999999999999998864 4 469999999999999986 78999999999999999999999986
Q ss_pred c-----hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH-----------------HHHHcCCceeEeeeccccccCcc
Q 009444 220 H-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-----------------EVEKRGLQVAVAGIPKTIDNDIA 277 (534)
Q Consensus 220 ~-----d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e-----------------~~~~~g~~i~vvgIPkTIDNDI~ 277 (534)
+ +..+++++|++++||+||+||||||+++|++|++ +..+++..++|||||||||||++
T Consensus 258 ~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 258 EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 3 3678999999999999999999999999998764 34455678999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCCh-hhHHHHH
Q 009444 278 VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP-GGLFEFI 356 (534)
Q Consensus 278 gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~-~~l~e~I 356 (534)
+||+|||||||+++++++|++++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||++++. +.+++.+
T Consensus 338 gTD~TiGfdTAv~~i~eaId~I~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i 415 (941)
T 3opy_B 338 STDATIGAFSSLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIV 415 (941)
T ss_dssp SCSSCEEHHHHHHHHHHHHHHHHSCC-CC-SEEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999987 579999999999999999999999 89999999999999742 3455555
Q ss_pred HHHHHh-CCcEEEEEeCCCCchhhcccCCccccccccCCcchhhhHHHHHHHHHhhccccceeEEeeeeeCCCccccCCC
Q 009444 357 ERQLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP 435 (534)
Q Consensus 357 ~~rl~~-~~~~vIVvaEGa~~~~~~~~l~~~~~~Da~Gn~~l~~ig~~L~~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~ 435 (534)
+++..+ ++|+|||||||+.+. .|+.. .+..+++.|+++++ +++|...|||+|||++
T Consensus 416 ~~~~~~gk~~~IVVVAEGa~~~--------------~~~~i---~~~~l~~~i~~~~g------~d~R~tvLGhiQRGG~ 472 (941)
T 3opy_B 416 GKHRARGKRKTIVIVAEGAISN--------------DLSPI---SCDQVKDVLVNRLG------LDTRVTTLGHVQRGGT 472 (941)
T ss_dssp HHHHHHTCCCEEEEECTTCBCT--------------TCCBC---CHHHHHHHHHHTSC------CEEEEEECGGGGTCSC
T ss_pred HHHHhcCCCcEEEEEeCCcccc--------------cCCcc---hHHHHHHHHHHHhC------CceeecccChhhcCCC
Confidence 554433 578999999999643 22221 14678888888765 5678889999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEeCCeeeeeeHHHHhhhcCCCC--CCHHHHHHHHHhcCCCCCCChhh
Q 009444 436 SNGSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIARVTETQKTVK--LTDRMWARLLASTNQPSFLNCSE 510 (534)
Q Consensus 436 p~a~Dr~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPl~~v~~~~k~v~--~~~~~w~~~l~~t~qp~f~~~~~ 510 (534)
|+++||++|++||.+||+++++|.+ |+||++++++++++||++++.+.|.|. .+...|.+.++..| ++|..+-+
T Consensus 473 Psa~DRilAtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~~~~f~~a~~lr~-~~f~~~~~ 551 (941)
T 3opy_B 473 AVAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESRNFKKAISLRD-SEFVEHMK 551 (941)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-HHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHhcCCHHHHHHccC-HHHHHHHH
Confidence 9999999999999999999999997 799999999999999999999888876 55678999999975 89999888
Q ss_pred Hhhhhh
Q 009444 511 VLHHQE 516 (534)
Q Consensus 511 ~~~~~~ 516 (534)
.|....
T Consensus 552 ~~~~~~ 557 (941)
T 3opy_B 552 NFISTN 557 (941)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877654
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=94.76 E-value=0.032 Score=55.52 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=60.7
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
.|++|+.-.+ .+..+..++.+.+.+.. . +.+++.......++- ..|. .....+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~-~-g~~v~~~~~~~~~~~-----------------~~~~------~~~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD-Q-GYEVIVEQQIAHELQ-----------------LKNV------PTGTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH-T-TCEEEEEHHHHHHTT-----------------CSSC------CEECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH-C-CCEEEEecchhhhcc-----------------cccc------cccchhh
Confidence 4799998765 36777888888888764 3 357766554333321 0010 0011111
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHHH
Q 009444 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~~ 301 (534)
...+.|.++++|||||+..|..... +.+++++|||. | |.||-|.+ +.+.++++.+..
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~~-------G---t~gfla~~~~~~~~~al~~i~~ 118 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGINR-------G---NLGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBCS-------S---SCCSSCCBCTTSHHHHHHHHHT
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEEC-------C---CcccCCcCCHHHHHHHHHHHHc
Confidence 2346899999999999988764432 23578999982 2 34554444 334555555543
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=92.68 E-value=0.053 Score=53.83 Aligned_cols=65 Identities=26% Similarity=0.328 Sum_probs=39.6
Q ss_pred HHHHHHHHHhC-------CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHH
Q 009444 223 NKIVDNIEDRG-------INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQ 293 (534)
Q Consensus 223 ~~iv~~l~~~~-------Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~ 293 (534)
+++.+.|++++ .|.+|++|||||+..|..... ...-+++++|||. | +.||-|.+ +.+.
T Consensus 18 ~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~-------G---~lgfl~~~~~~~~~ 84 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT-------G---HLGFYADWRPAEAD 84 (272)
T ss_dssp HHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES-------S---SCCSSCCBCGGGHH
T ss_pred HHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC-------C---CCCcCCcCCHHHHH
Confidence 44555555554 599999999999987664432 1112588999974 2 35555442 3344
Q ss_pred HHHHHHH
Q 009444 294 RAINAAH 300 (534)
Q Consensus 294 ~ai~~i~ 300 (534)
++++.+.
T Consensus 85 ~~l~~l~ 91 (272)
T 2i2c_A 85 KLVKLLA 91 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 19
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=90.75 E-value=0.089 Score=52.94 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHHHHHHHh---------------CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChh
Q 009444 222 TNKIVDNIEDR---------------GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 286 (534)
Q Consensus 222 ~~~iv~~l~~~---------------~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFd 286 (534)
.+++.+.|+++ +.|.++++|||||+..|..... .. ++|+||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 55666666665 4588999999999966654321 33 89999973 288998
Q ss_pred hHH--HHHHHHHHHHHH
Q 009444 287 TAV--EEAQRAINAAHV 301 (534)
Q Consensus 287 TAv--~~~~~ai~~i~~ 301 (534)
|.+ +.+.++++++..
T Consensus 106 t~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 106 THASPENFEVELKKAVE 122 (278)
T ss_dssp CCBBTTBCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 765 445566666654
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=88.83 E-value=16 Score=34.68 Aligned_cols=174 Identities=7% Similarity=0.007 Sum_probs=92.7
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-Cch
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d 221 (534)
+..+|+++.....-|=...++.++.+.+.. ++ .++.-+ ..+.. ...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 49 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQA-LN-VTVEYR-------------------------------GAAQYDIQE 49 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSSCHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------CCCcCCHHH
Confidence 456899999888889899999998887764 33 233211 11111 123
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc--CCCCChhhHHHHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~ai~~i 299 (534)
..+.++.+...++|++++.+.+.... ....+.+.+.+ ++||.+ |++++.. ..++++|-. .....+.+.+
T Consensus 50 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~~~~l 120 (305)
T 3g1w_A 50 QITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNAAYKM 120 (305)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCC--CcEEEE----CCCCCCCceeEEECcCHH-HHHHHHHHHH
Confidence 45777888889999999998776521 11223344445 556644 5555442 245666542 2223333444
Q ss_pred HHhhhhcCCceEEEEecC------CCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhC
Q 009444 300 HVEVESVENGVGIVKLMG------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEvMG------R~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~ 363 (534)
......+ ++|.++--.+ |..||........- ..+.+.+.+..++.+ .-.+.+.+-++.+
T Consensus 121 ~~~~~g~-~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (305)
T 3g1w_A 121 AELLDGE-GEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSL---HSRRVAHQLLEDY 185 (305)
T ss_dssp HHHTTTC-EEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHH---HHHHHHHHHHHHC
T ss_pred HHHhCCC-cEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHH---HHHHHHHHHHHhC
Confidence 3333344 5688886433 23344443322111 233444434444332 4455556556554
No 21
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=88.81 E-value=17 Score=35.71 Aligned_cols=85 Identities=12% Similarity=0.008 Sum_probs=53.5
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (534)
..+||++...-.-|=...++.++...+.. ++ .+++- ..+.. ....
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 113 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-TE-LQPVV--------------------------------GVTDYLPEKE 113 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-SS-SEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCCHHHH
Confidence 45899999777777778888888877753 22 23321 11111 1234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+.++.|...++|++++.+-+.+-. +.+.+.+.++ ++|.+
T Consensus 114 ~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~i--PvV~i 153 (344)
T 3kjx_A 114 EKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAGI--PVVEI 153 (344)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCSS--CEEEE
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCCC--CEEEE
Confidence 5677888899999999998776542 2334445564 45554
No 22
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=86.65 E-value=21 Score=34.91 Aligned_cols=85 Identities=11% Similarity=0.031 Sum_probs=53.3
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (534)
..+||++...-.-|-...++.++-..+.. ++ .+++ +..+.. ....
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA-AG-YQML--------------------------------IGNSHYDAGQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 35899998777777788888888877754 33 2332 111111 1234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+.++.|...++|++++.+-+.+-.. .+.+.+.+ +++|.+
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~ 147 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEPF----ERILSQHA--LPVVYM 147 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTTH----HHHHHHTT--CCEEEE
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHHH----HHHHhcCC--CCEEEE
Confidence 56778888999999999997665422 23344445 456655
No 23
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=85.28 E-value=19 Score=35.14 Aligned_cols=124 Identities=7% Similarity=0.021 Sum_probs=68.9
Q ss_pred CeeEEEEccC--CCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-c
Q 009444 144 EVRACIVTCG--GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-H 220 (534)
Q Consensus 144 ~~riaIvtsG--G~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~ 220 (534)
..+||++... -.-|-...++.++.+.+.+ ++ .++.- ..+... .
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~ 106 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLL--------------------------------ADGKHSAE 106 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTSHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChH
Confidence 4589999877 6667777888888877754 33 23321 111111 2
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChhhHHHHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAA 299 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i 299 (534)
...+.++.|...++|++++.+.+.+... +.+.+.+.+ ++||.+ |.+++..+ .++++|-. .....+.+.+
T Consensus 107 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~D~~-~~~~~a~~~L 176 (338)
T 3dbi_A 107 EERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMVL----NRRLRKNSSHSVWCDHK-QTSFNAVAEL 176 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEEE----SSCCSSSGGGEECBCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEEE----cCCCCCCCCCEEEEChH-HHHHHHHHHH
Confidence 2345778888999999999987766432 333444444 456643 44443322 24555421 1122223333
Q ss_pred HHhhhhcCCceEEEE
Q 009444 300 HVEVESVENGVGIVK 314 (534)
Q Consensus 300 ~~~A~S~~~rv~iVE 314 (534)
.. .++ ++|.++-
T Consensus 177 ~~--~G~-~~I~~i~ 188 (338)
T 3dbi_A 177 IN--AGH-QEIAFLT 188 (338)
T ss_dssp HH--TTC-CSEEEEC
T ss_pred HH--CCC-CEEEEEe
Confidence 22 254 5687773
No 24
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=84.85 E-value=21 Score=33.62 Aligned_cols=128 Identities=6% Similarity=0.027 Sum_probs=72.7
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchH
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 222 (534)
+..+||++...-.-|-...++.++.+.+.. ++ .++.-+ .+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LG-GTAIAL-------------------------------DAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------cCCCCHHHH
Confidence 456899999877777778888888887754 33 222211 111112334
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHh
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVE 302 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~ 302 (534)
...++.+...++|++++.+.+.... ....+.+.+.+ ++||.+ |.+.+..-.++++|-. .....+.+.+...
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~V~~D~~-~~g~~~~~~l~~~ 121 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVL--NPWLQKINDAG--IPLFTV----DTATPHAINNTTSNNY-SIGAELALQMVAD 121 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHH--HHHHHHHHHTT--CCEEEE----SCCCTTCSEEEEECHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CcEEEe----cCCCCCcCceEecChH-HHHHHHHHHHHHH
Confidence 5778888899999999998874322 22334455556 456655 3333332335555432 1222333344433
Q ss_pred hhhcCCceEEE
Q 009444 303 VESVENGVGIV 313 (534)
Q Consensus 303 A~S~~~rv~iV 313 (534)
...+ ++|.++
T Consensus 122 ~~g~-~~i~~i 131 (291)
T 3l49_A 122 LGGK-GNVLVF 131 (291)
T ss_dssp HTTC-EEEEEE
T ss_pred cCCC-ceEEEE
Confidence 3454 567777
No 25
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=84.08 E-value=0.25 Score=48.58 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=34.5
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHHHHHHHHHH
Q 009444 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~ai~~i~ 300 (534)
.+.|.++++|||||+..+..... + .++++||+. | |.||-|.+ +.+.++++.+.
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn~-------G---~~Gfl~~~~~~~~~~al~~i~ 94 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFKA-------G---RLGFLTSYTLDEIDRFLEDLR 94 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEES-------S---SCCSSCCBCGGGHHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEEC-------C---CCCccCcCCHHHHHHHHHHHH
Confidence 47899999999999877654321 3 688999972 2 44665544 23444555543
No 26
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=80.03 E-value=38 Score=31.36 Aligned_cols=166 Identities=11% Similarity=0.150 Sum_probs=85.9
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
.+||++...-.-|-...++.++-+.+.. ++ .++.-+. +........+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RG-YQLLIAS-------------------------------SDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHHH
Confidence 4799999887788888888888877754 33 2332110 1111123456
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChhhHHHHHHHHHHHHHHhh
Q 009444 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHVEV 303 (534)
Q Consensus 225 iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~~A 303 (534)
.++.+...++|++++.+.+.... ...+.+.+.+ +++|. +|++++..+ .++++|-. .....+.+.+..
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~-- 117 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPED---DSYRELQDKG--LPVIA----IDRRLDPAHFCSVISDDR-DASRQLAASLLS-- 117 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHTT--CCEEE----ESSCCCTTTCEEEEECHH-HHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCEEEEecCccccH---HHHHHHHHcC--CCEEE----EccCCCccccCEEEEchH-HHHHHHHHHHHH--
Confidence 78888899999999998774321 1223344455 45663 455554322 23444421 112223333322
Q ss_pred hhcCCceEEEEecC-------CCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh
Q 009444 304 ESVENGVGIVKLMG-------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE 362 (534)
Q Consensus 304 ~S~~~rv~iVEvMG-------R~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~ 362 (534)
..+ ++|.++--.. |..||. .++...+.+...+....++.+ .-.+.+++-++.
T Consensus 118 ~G~-~~i~~i~~~~~~~~~~~R~~gf~---~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 176 (272)
T 3o74_A 118 SAP-RSIALIGARPELSVSQARAGGFD---EALQGYTGEVRRYQGEAFSRE---CGQRLMQQLIDD 176 (272)
T ss_dssp TCC-SEEEEEEECTTSHHHHHHHHHHH---HHTTTCCSEEEEEEESSSSHH---HHHHHHHHHHHH
T ss_pred CCC-cEEEEEecCCCCccHHHHHHHHH---HHHHHcCCChheeecCCCCHH---HHHHHHHHHHhc
Confidence 243 5687775432 222443 334433444444433334333 344555555544
No 27
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=78.98 E-value=12 Score=36.56 Aligned_cols=99 Identities=17% Similarity=0.314 Sum_probs=61.7
Q ss_pred ccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEccccccccc---------------CCcccCCHHH
Q 009444 137 KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------------KNTLTLSPKV 201 (534)
Q Consensus 137 ~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---------------~~~~~L~~~~ 201 (534)
....+....+-++|.++|+-+- .++. ++... .-++|+-.|..=|++ |++-.++++.
T Consensus 13 ~~~~~~~~~~~~lIv~ng~~~~---~~~~----~~~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~ 83 (247)
T 3s4y_A 13 NLYFQGGNLKYCLVILNQPLDN---YFRH----LWNKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEV 83 (247)
T ss_dssp -------CCCEEEEECSSCCCT---THHH----HHHHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHH
T ss_pred cccccCCCCCEEEEEECCcchH---HHHH----HHhhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHH
Confidence 3333445567788888999872 3333 33322 247888888766554 3455667777
Q ss_pred HhhHhhcCCcceeecCCC--chHHHHHHHHHHh------CCcEEEEEcCCcc
Q 009444 202 VNDIHKRGGTILRTSRGG--HDTNKIVDNIEDR------GINQVYIIGGDGT 245 (534)
Q Consensus 202 V~~i~~~GGs~LGTsR~~--~d~~~iv~~l~~~------~Id~LvvIGGdgS 245 (534)
.+.+...|-.++-.. .+ -|++++++.+.+. +.+-++++|+.|.
T Consensus 84 ~~~~~~~~~~i~~~p-eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 84 REYYATKGCELISTP-DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp HHHHHHTTCEEEECC-CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred HHHHHhcCCEEEECC-CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 777777765555432 22 3788888887664 7899999999996
No 28
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=74.87 E-value=48 Score=32.57 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=53.3
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (534)
..+||++...-.-|-...++.++-..+.. ++ .+++ +..+.. ....
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 115 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GG-LQLL--------------------------------LGYTAYSPERE 115 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 34899998777777777788888777653 33 2332 111111 1234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+.++.|...++|++++.+.+.+... .+.+.+.+ +++|.+
T Consensus 116 ~~~~~~l~~~~vdGiI~~~~~~~~~~----~~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 116 EQLVETMLRRRPEAMVLSYDGHTEQT----IRLLQRAS--IPIVEI 155 (355)
T ss_dssp HHHHHHHHHTCCSEEEEECSCCCHHH----HHHHHHCC--SCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 57788888999999999988766422 23444455 456655
No 29
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=74.07 E-value=1.6 Score=45.44 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=70.1
Q ss_pred ccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccc--cccCCcccCCHHHHhhHhhcCCccee
Q 009444 137 KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRG--FYSKNTLTLSPKVVNDIHKRGGTILR 214 (534)
Q Consensus 137 ~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~G--L~~~~~~~L~~~~V~~i~~~GGs~LG 214 (534)
++.......+|+||+== ..|.+-..++.+++.+.. .+.+||-=..=.+- +.+. ..... +... +-
T Consensus 31 ~l~w~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~--~~~~V~ve~~~~~~~~~~~~----~~~~~---~~~~----~~ 96 (365)
T 3pfn_A 31 RLTWNKSPKSVLVIKKM-RDASLLQPFKELCTHLME--ENMIVYVEKKVLEDPAIASD----ESFGA---VKKK----FC 96 (365)
T ss_dssp BEEESSCCCEEEEEECT-TCGGGHHHHHHHHHHHHH--TSCEEEEEHHHHHSHHHHHC----STTHH---HHHH----CE
T ss_pred ccccCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH--CCCEEEEehHHhhhhccccc----ccccc---cccc----cc
Confidence 33334445689999842 357788889999998875 24566631110000 0000 00000 0000 00
Q ss_pred ecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH--HHH
Q 009444 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEA 292 (534)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~ 292 (534)
+.+. +.+.+ ...+|.++++|||||+-.|..+.. +..++|+||=. -++||-|-+ +.+
T Consensus 97 ~~~~--~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~ 154 (365)
T 3pfn_A 97 TFRE--DYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENF 154 (365)
T ss_dssp EECT--TTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTH
T ss_pred cccc--Chhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHH
Confidence 1010 11111 247899999999999988776542 45678999832 388887753 345
Q ss_pred HHHHHHHHH
Q 009444 293 QRAINAAHV 301 (534)
Q Consensus 293 ~~ai~~i~~ 301 (534)
.++++++..
T Consensus 155 ~~~l~~vl~ 163 (365)
T 3pfn_A 155 QSQVTQVIE 163 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 566666543
No 30
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=73.63 E-value=5.4 Score=40.13 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcc
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~ 277 (534)
..++++.+...+.|.++++|||||+..+..-. .+.+.++++.+||.==-||+.
T Consensus 69 a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 69 ATLEAERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhHHH
Confidence 34445555556889999999999987755332 223567899999986667764
No 31
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=72.46 E-value=64 Score=30.27 Aligned_cols=125 Identities=8% Similarity=0.084 Sum_probs=69.3
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchH
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 222 (534)
+..+||++...-.-|-...++.++.+.+.. ++ .++.-+. +.......
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KG-YSVLLAN-------------------------------TAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHH
Confidence 345899999877777788888888777754 33 2333111 11111234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChhhHHHHHHHHHHHHHH
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHV 301 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~~ 301 (534)
.++++.|...++|++++.+.+..... .+.+.+. .++||.+ |++++..+ .++++|-. .....+.+.+..
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~~~~~--~iPvV~~----~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 122 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHDY----LRTELPK--TFPIVAV----NRELRIPGCGAVLSENV-RGARTAVEYLIA 122 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCHH----HHHSSCT--TSCEEEE----SSCCCCTTCEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChHH----HHHhhcc--CCCEEEE----ecccCCCCCCEEEECcH-HHHHHHHHHHHH
Confidence 56788889999999999998763322 2333333 4567744 55544221 24444432 112222333322
Q ss_pred hhhhcCCceEEEE
Q 009444 302 EVESVENGVGIVK 314 (534)
Q Consensus 302 ~A~S~~~rv~iVE 314 (534)
..+ ++|.++-
T Consensus 123 --~G~-~~i~~i~ 132 (291)
T 3egc_A 123 --RGH-TRIGAIV 132 (291)
T ss_dssp --TTC-CSEEEEC
T ss_pred --cCC-CEEEEEe
Confidence 244 5677764
No 32
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=72.38 E-value=1.1 Score=45.02 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=24.3
Q ss_pred HhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeec
Q 009444 231 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (534)
Q Consensus 231 ~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIP 269 (534)
..+.|.++++|||||+..|...... . +++++||+
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~ 106 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVN 106 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEE
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEe
Confidence 3578999999999998887655432 2 36889997
No 33
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=72.12 E-value=12 Score=37.62 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--CCceeEeeeccccccCcc
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVAGIPKTIDNDIA 277 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~--g~~i~vvgIPkTIDNDI~ 277 (534)
..++++.+...+.|.++++|||||+..+..-. .++ +.++++..||.==-||+.
T Consensus 71 ~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l---~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 71 AARYVEEARKFGVATVIAGGGDGTINEVSTAL---IQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHHHHHHHH---HHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCCEEEEEccchHHHHHHHHH---hhcccCCCCeEEEecCcCHHHHH
Confidence 34445555556899999999999987755332 222 456788889975556653
No 34
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=71.23 E-value=51 Score=30.84 Aligned_cols=123 Identities=14% Similarity=0.063 Sum_probs=71.5
Q ss_pred CCeeEEEEccC-----CCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecC
Q 009444 143 DEVRACIVTCG-----GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR 217 (534)
Q Consensus 143 ~~~riaIvtsG-----G~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR 217 (534)
+..+||++... -.-|-...+++++.+.+.. ++ .++.- ..+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-YALYM--------------------------------STGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------CCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EeCC
Confidence 34589999987 6778888899998887754 33 23321 0111
Q ss_pred CC-chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc--CCCCChhh--HHHHH
Q 009444 218 GG-HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEA 292 (534)
Q Consensus 218 ~~-~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt--D~S~GFdT--Av~~~ 292 (534)
.. ....++++.+...++|++++.+.+.+-. ..+.+.+.+ ++||.+ |++.+.. -.++++|- +...+
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a 122 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVLI----GKPYDRKDEITYVDNDNYTAAREV 122 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEEE----SCCSSCTTTSCEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEEE----CCCCCCCCCCCEEEECcHHHHHHH
Confidence 11 2245778888899999999998876542 234444455 456643 5554432 23455443 33333
Q ss_pred HHHHHHHHHhhhhcCCceEEEEe
Q 009444 293 QRAINAAHVEVESVENGVGIVKL 315 (534)
Q Consensus 293 ~~ai~~i~~~A~S~~~rv~iVEv 315 (534)
++.+ .. ..+ ++|.++--
T Consensus 123 ~~~L---~~--~G~-~~i~~i~~ 139 (292)
T 3k4h_A 123 AEYL---IS--LGH-KQIAFIGG 139 (292)
T ss_dssp HHHH---HH--TTC-CCEEEEES
T ss_pred HHHH---HH--CCC-ceEEEEeC
Confidence 3333 22 244 56877753
No 35
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=70.09 E-value=68 Score=29.95 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=72.4
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (534)
+.+||++...-.-|-...+++++-+.+.. ++ .++.-+ ++.. ....
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 60 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSE-QG-YSMLLT--------------------------------STNNNPDNE 60 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHHH
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCChHHH
Confidence 36899999888888888889888887754 33 233211 1111 1234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchH-HHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChhhHHHHHHHHHHHHH
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQK-GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAH 300 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~-~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~ai~~i~ 300 (534)
.+.++.|...++|++++.+.+.+.. ....+.+.+.+.+ ++||.+ |++.+..+ .++++|-. +....+.+.+.
T Consensus 61 ~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~ 133 (298)
T 3tb6_A 61 RRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAAPSFTLDDV-KGGMMAAEHLL 133 (298)
T ss_dssp HHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSSCEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCCCEEEeCcH-HHHHHHHHHHH
Confidence 5778888899999999999875421 1112334444555 456644 44443322 24554432 12222333333
Q ss_pred HhhhhcCCceEEEEec
Q 009444 301 VEVESVENGVGIVKLM 316 (534)
Q Consensus 301 ~~A~S~~~rv~iVEvM 316 (534)
. .++ ++|.++--.
T Consensus 134 ~--~G~-~~i~~i~~~ 146 (298)
T 3tb6_A 134 S--LGH-THMMGIFKA 146 (298)
T ss_dssp H--TTC-CSEEEEEES
T ss_pred H--CCC-CcEEEEcCC
Confidence 2 244 568777543
No 36
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=68.51 E-value=78 Score=29.62 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=96.5
Q ss_pred CCeeEEEEccCC-CCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-Cc
Q 009444 143 DEVRACIVTCGG-LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (534)
Q Consensus 143 ~~~riaIvtsGG-~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~ 220 (534)
+..+||++...- .-|-...++.++.+.+.. .++..+.-.. ...+.. ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~~g~~~~~~~-----------------------------~~~~~~~~~ 56 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTT-YSDFNISANI-----------------------------THYDPYDYN 56 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHH-TGGGCEEEEE-----------------------------EEECSSCHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHH-HHhCCeEEEE-----------------------------EcCCCCCHH
Confidence 456899999877 788888888888887754 2111222110 001111 12
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCceeEeeeccccccCcccc--CCCCChhh--HHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRA 295 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS-~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt--D~S~GFdT--Av~~~~~a 295 (534)
...+.++.|...++|++++.+.+.. ... +.+.+.+.+ ++||.+ |++++.. ..++++|- +...+++.
T Consensus 57 ~~~~~i~~l~~~~vdgiii~~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~~ 127 (304)
T 3gbv_A 57 SFVATSQAVIEEQPDGVMFAPTVPQYTKG---FTDALNELG--IPYIYI----DSQIKDAPPLAFFGQNSHQSGYFAARM 127 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSGGGTHH---HHHHHHHHT--CCEEEE----SSCCTTSCCSEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCChHHHHH---HHHHHHHCC--CeEEEE----eCCCCCCCceEEEecChHHHHHHHHHH
Confidence 3456788888999999999988754 222 223344445 456644 4555432 23455543 33333333
Q ss_pred HHHHHHhhhhcCCceEEEEe-----------cCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhC-
Q 009444 296 INAAHVEVESVENGVGIVKL-----------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN- 363 (534)
Q Consensus 296 i~~i~~~A~S~~~rv~iVEv-----------MGR~sG~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~- 363 (534)
+ ...... +++|.++-. .-|..||........- ..+...+.+..++.+ .-.+.+++-++++
T Consensus 128 l---~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 199 (304)
T 3gbv_A 128 L---MLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI---EDSRMLDDFFREHP 199 (304)
T ss_dssp H---HHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS---CHHHHHHHHHHHCT
T ss_pred H---HHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH---HHHHHHHHHHHhCC
Confidence 3 222111 256887752 2356677665443221 334555544555555 3445555555554
Q ss_pred -CcEEEEEeC
Q 009444 364 -GHMVIVVAE 372 (534)
Q Consensus 364 -~~~vIVvaE 372 (534)
--+|+..+.
T Consensus 200 ~~~ai~~~~d 209 (304)
T 3gbv_A 200 DVKHGITFNS 209 (304)
T ss_dssp TCCEEEESSS
T ss_pred CeEEEEEcCc
Confidence 235554443
No 37
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=67.70 E-value=73 Score=30.15 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=66.3
Q ss_pred CeeEEEEcc----CCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC
Q 009444 144 EVRACIVTC----GGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 144 ~~riaIvts----GG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
..+||++.. .-.-|=...+++++-+.+.+ ++ .++.-+. + ...
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~-~~~ 51 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGK-RG-LDLLLIP-------------------------------D-EPG 51 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------E-CTT
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------C-CCh
Confidence 458999886 34455666677777776653 23 2332111 1 112
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChhh--HHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAI 296 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFdT--Av~~~~~ai 296 (534)
.....+.+.+...++|++++.+.+.+... .+.+.+.+ ++||.+ |++.+... .++++|- +...+++
T Consensus 52 ~~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~~~~a~~-- 119 (294)
T 3qk7_A 52 EKYQSLIHLVETRRVDALIVAHTQPEDFR----LQYLQKQN--FPFLAL----GRSHLPKPYAWFDFDNHAGASLAVK-- 119 (294)
T ss_dssp CCCHHHHHHHHHTCCSEEEECSCCSSCHH----HHHHHHTT--CCEEEE----SCCCCSSCCEEEEECHHHHHHHHHH--
T ss_pred hhHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhCC--CCEEEE----CCCCCCCCCCEEEcChHHHHHHHHH--
Confidence 23456788888999999999998765422 23344455 456643 44432221 2344442 3333333
Q ss_pred HHHHHhhhhcCCceEEEEec
Q 009444 297 NAAHVEVESVENGVGIVKLM 316 (534)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEvM 316 (534)
.+.. .++ ++|.++--.
T Consensus 120 -~L~~--~G~-~~I~~i~~~ 135 (294)
T 3qk7_A 120 -RLLE--LGH-QRIAFVSTD 135 (294)
T ss_dssp -HHHH--TTC-CCEEEEEES
T ss_pred -HHHH--CCC-ceEEEEeCC
Confidence 3322 354 568877543
No 38
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=67.64 E-value=86 Score=29.79 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=90.6
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
+.+|||+...-.-|-...+++++.+.+.. ++ .++.- ..+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVFV-------------------------------QSANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TS-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHH
Confidence 45899999887788888999998887764 33 23321 11111112345
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC--CCCChhhHHHHHHHHHHHHHH
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHV 301 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD--~S~GFdTAv~~~~~ai~~i~~ 301 (534)
+.++.+...++|++++.+-+.... ....+.+.+.+ |+||.+ |++++..+ .++++|-. .....+.+.+..
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 119 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDNE-KVGELQAKALVD 119 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCHH-HHHHHHHHHHHH
Confidence 678888899999999999876531 11223333344 567754 55554433 36666632 122222333321
Q ss_pred hhhhcCCceEEEEe-cC------CCcchHHHHHhhhcCCCcEEecCCC---CCCCCChhhHHHHHHHHHHhC
Q 009444 302 EVESVENGVGIVKL-MG------RYSGFISMYATLASRDVDCCLIPES---PFYLEGPGGLFEFIERQLKEN 363 (534)
Q Consensus 302 ~A~S~~~rv~iVEv-MG------R~sG~LAl~aaLAs~~ad~ilIPE~---pf~le~~~~l~e~I~~rl~~~ 363 (534)
...+ ++|.++-- .+ |..||......... .+++.++++. .++ .+.-.+.+++-++..
T Consensus 120 -~~G~-~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~ 185 (313)
T 3m9w_A 120 -IVPQ-GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVD-SGKIKVVGDQWVDGWL---PENALKIMENALTAN 185 (313)
T ss_dssp -HCSS-EEEEEEESCTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEECGGGC---HHHHHHHHHHHHHHT
T ss_pred -hCCC-CcEEEEECCCCCccHHHHHHHHHHHHHhhcc-CCCEEEEeeccCCCcC---HHHHHHHHHHHHHhC
Confidence 1344 46777742 22 34566554333211 2355554432 222 224445555555543
No 39
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=67.54 E-value=1.5 Score=45.97 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=36.5
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCce-eEeeeccccccCccccCCCCChhhHHH--HHHHHHHHHH
Q 009444 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQV-AVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (534)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i-~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~ai~~i~ 300 (534)
.+.|.+|++|||||+..|..... ...+ +|+||+. -++||-|.++ .+.++++.+.
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~----------G~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL----------GTLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC----------SSCCSSCCEEGGGHHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC----------CCcccCCcCChHHHHHHHHHHh
Confidence 45899999999999988765432 2345 7999962 2678877643 3444555544
No 40
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=65.91 E-value=17 Score=34.54 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=52.4
Q ss_pred CcEEEEEccccccccc---------CCcccCCHHHHhhHhhcCCcceeecCC--CchHHHHHHHHHHhCCcEEEEEcCCc
Q 009444 176 VDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDG 244 (534)
Q Consensus 176 ~~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR~--~~d~~~iv~~l~~~~Id~LvvIGGdg 244 (534)
...++|+-.|..=|++ |++-.++.+....+...| .++-.... .-|++++++.+.+++.+-++++|+.|
T Consensus 22 ~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~G 100 (212)
T 3l8m_A 22 HEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATG 100 (212)
T ss_dssp TSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 3578999999887754 455567777777777777 66644333 24799999999999999999999999
Q ss_pred c
Q 009444 245 T 245 (534)
Q Consensus 245 S 245 (534)
.
T Consensus 101 g 101 (212)
T 3l8m_A 101 G 101 (212)
T ss_dssp S
T ss_pred C
Confidence 6
No 41
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=63.44 E-value=9.7 Score=38.84 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~G 284 (534)
+..+++++.+++.+.|.++-|||--.+..|..++- . ++ +++|.||-| ++||-..|
T Consensus 73 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~-~--~~--~p~i~IPTT-----a~tgSevt 127 (370)
T 1jq5_A 73 NEVERIANIARKAEAAIVIGVGGGKTLDTAKAVAD-E--LD--AYIVIVPTA-----ASTDAPTS 127 (370)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHH-H--HT--CEEEEEESS-----CCSSCTTC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHH-h--cC--CCEEEeccc-----cCCCcccC
Confidence 34678888999999999999999888888887773 2 24 689999998 66665554
No 42
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=62.20 E-value=71 Score=30.38 Aligned_cols=121 Identities=10% Similarity=0.070 Sum_probs=67.8
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (534)
..+||++...-.-|-...++.++-+.+.+ ++. +++ +..+.. ....
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HST-DVL--------------------------------LGQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TTC-CEE--------------------------------EEECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCChHHH
Confidence 34788888777777777888888777653 222 222 111221 2334
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChh--hHHHHHHHHHHHHH
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD--TAVEEAQRAINAAH 300 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFd--TAv~~~~~ai~~i~ 300 (534)
.++++.|...++|++++.+.+.+... ..+.+.+ + ++||.+ |++++..-.++++| .+...+++ .+.
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~-~--iPvV~i----~~~~~~~~~~V~~D~~~~g~~a~~---~L~ 127 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE-G--VPAVTI----NSRVPGRVGSVILDDQKGGGIATE---HLI 127 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT-T--SCEEEE----SCCCTTCCCEEEECHHHHHHHHHH---HHH
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC-C--CCEEEE----CCcCCCCCCEEEECcHHHHHHHHH---HHH
Confidence 67888899999999999998776431 2233444 4 567755 44443212244444 23333333 332
Q ss_pred HhhhhcCCceEEEE
Q 009444 301 VEVESVENGVGIVK 314 (534)
Q Consensus 301 ~~A~S~~~rv~iVE 314 (534)
. .++ ++|.++-
T Consensus 128 ~--~G~-~~I~~i~ 138 (303)
T 3kke_A 128 T--LGH-SRIAFIS 138 (303)
T ss_dssp H--TTC-CSEEEEE
T ss_pred H--CCC-CeEEEEe
Confidence 2 354 5677775
No 43
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=61.64 E-value=1.2e+02 Score=29.39 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=23.3
Q ss_pred CeeEEEEccCCCC-chhhHHHHHHHHHHHH
Q 009444 144 EVRACIVTCGGLC-PGINTVIREIVCGLSY 172 (534)
Q Consensus 144 ~~riaIvtsGG~a-PGmNavIr~iv~~~~~ 172 (534)
+.+||++..+-.. |=...+++++.+.+..
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~ 32 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD 32 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 4589999988776 8888888888887754
No 44
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=61.22 E-value=1.2e+02 Score=29.83 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=95.3
Q ss_pred CCeeEEEEc-cCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-Cc
Q 009444 143 DEVRACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (534)
Q Consensus 143 ~~~riaIvt-sGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~ 220 (534)
..+||+||| |+.+-| ....+.++ ..|+-++-=+.|=.-.+-++++++++-.....++.+--||-- ..
T Consensus 2 ~~Mki~IvtDSt~dl~----------~e~~~~~~-I~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSqps~~ 70 (285)
T 3lup_A 2 NAMKLALITDTSAYLP----------EAIENHED-VYVLDIPIIIDGKTYIEGQNLTLDQYYDKLAASKELPKTSQPSLA 70 (285)
T ss_dssp -CCCEEEEEETTBCCC----------TTTTTCTT-EEEECCCEESSSSCCCBTTTBCHHHHHHHHHHCSSCCEECCCCHH
T ss_pred CCCCEEEEEECCCCCC----------HHHHHHCC-eEEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCCCCHH
Confidence 457899999 665655 11122233 244333222222211223679999888888777777778775 35
Q ss_pred hHHHHHHHHHHhCCcEEEEEc----CCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 296 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIG----GdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai 296 (534)
++.++.+.+.+.|-+.+++|. =.||+.+|...+++.. +.+|.|| |.- -.|.|..=.+..+++.+
T Consensus 71 ~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~~~--~~~I~Vi------DS~----~~s~g~g~~v~~A~~l~ 138 (285)
T 3lup_A 71 ELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHP--NLTIAFP------DTK----ITSAPQGNLVRNALMCS 138 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCT--TSEEECC------CCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHhCC--CCCEEEE------cCC----chHHHHHHHHHHHHHHH
Confidence 788888888888999888875 4677777776654321 2222222 111 12455555555555543
Q ss_pred H----------HHHHhhhhcCCceEEEEec------CCCcchHHHHHhhhcCCCcEEe
Q 009444 297 N----------AAHVEVESVENGVGIVKLM------GRYSGFISMYATLASRDVDCCL 338 (534)
Q Consensus 297 ~----------~i~~~A~S~~~rv~iVEvM------GR~sG~LAl~aaLAs~~ad~il 338 (534)
+ .+..-... -+-+|+|+.. ||=+.--|+.+.|-.-.|=+.+
T Consensus 139 ~~G~s~eeI~~~l~~~~~~-~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~ 195 (285)
T 3lup_A 139 REGMDFDVIVNKIQSQIEK-IEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHF 195 (285)
T ss_dssp TTTCCHHHHHHHHHHHHTT-CEEEEECSCTHHHHHHTCBTTHHHHHHHHTTSCCEEEE
T ss_pred HcCCCHHHHHHHHHHHHhh-cEEEEEECChHHHhhCCCccHHHHHHHHhhCcEEEEEE
Confidence 2 22222222 2347888876 6665555555555432343333
No 45
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=61.09 E-value=11 Score=37.32 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~ 277 (534)
.+..++++.+.+ +.|.++++|||||+..+. +.+..+..++++..||.==-||+.
T Consensus 51 ~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 51 GDATKYCQEFAS-KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp THHHHHHHHHTT-TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHH
T ss_pred chHHHHHHHhhc-CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHH
Confidence 345556666554 899999999999987643 222222356889999987777774
No 46
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=60.51 E-value=44 Score=32.04 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=51.8
Q ss_pred cEEEEEccccccccc---------CCcccCCHHHHhhHhhcCCcceeecCC--CchHHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 177 DEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 177 ~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR~--~~d~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
..++|+-.|..=|++ +++-.++.+....+...|-.++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 25 ~~~i~~Dgga~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~GG 104 (223)
T 3k94_A 25 VCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQAFPDLDVWPAEKDKTDMEIALDWAVEQTARCIRLFGATGG 104 (223)
T ss_dssp EEEEEETTHHHHHHHHTCCCSEEESCGGGSCHHHHHHHHHHCTTCCEECCBTTBCHHHHHHHHHHTTCCSEEEEESCSSS
T ss_pred CEEEEECHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCcCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 467888888876653 455567777777777766455544333 247999999999999999999999996
No 47
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=60.50 E-value=50 Score=31.59 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=56.8
Q ss_pred cEEEEEccccccccc---------CCcccCCHHHHhhHhhcCCcceeecCC--CchHHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 177 DEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 177 ~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR~--~~d~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
.-++|+-.|..=|++ |++-.++.+....+...|-.++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 467888888876653 556667777777777776556655443 247999999999999999999999996
Q ss_pred -----hHHHHHHHHH
Q 009444 246 -----QKGAALIYKE 255 (534)
Q Consensus 246 -----~~~A~~L~e~ 255 (534)
+.....|.+.
T Consensus 106 R~DH~lani~ll~~~ 120 (222)
T 3lm8_A 106 RADHFLGNIQLLYKG 120 (222)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 4444445444
No 48
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=56.95 E-value=1.4e+02 Score=28.49 Aligned_cols=103 Identities=18% Similarity=0.118 Sum_probs=61.5
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchH
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 222 (534)
++.+|||+...-.-|=...++.++-..+.. ++ .++.- ..+.......
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~ 48 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQE-AG-YKTDL-------------------------------QYADDDIPNQ 48 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHH-TT-CEEEE-------------------------------EECTTCHHHH
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------eeCCCCHHHH
Confidence 346899999887788888888888887754 33 23321 1111111234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccc---cCCCCChh
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV---IDKSFGFD 286 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~g---tD~S~GFd 286 (534)
.+.++.+...++|++++.+-+.... ....+.+.+.+ ++||.+ |++++. .+.++|+|
T Consensus 49 ~~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 49 LSQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 5677888889999999998775321 11223344445 567754 555443 23356654
No 49
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=56.87 E-value=1.3e+02 Score=28.25 Aligned_cols=120 Identities=8% Similarity=-0.003 Sum_probs=66.5
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
..+||++. .-.-|-...++.++-+.+.+ ++ .++.-+ .+....+..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 56 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATR-RG-YDVMLS--------------------------------AVAPSRAEK 56 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------EEBTTBCHH
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899998 66677777888888777754 33 233211 111111245
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChhh--HHHHHHHHHHHHH
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAINAAH 300 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFdT--Av~~~~~ai~~i~ 300 (534)
+.++.|...++|++++.+.+.+.. ..+.+.+ + ++||.+ |++++... .++++|- +...+++ .+.
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~-~--iPvV~i----~~~~~~~~~~~V~~D~~~~~~~a~~---~L~ 122 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDTD----ELGALAD-R--VPALVV----ARASGLPGVGAVRGDDVAGITLAVD---HLT 122 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCHH----HHHHHHT-T--SCEEEE----SSCCSSTTSEEEEECHHHHHHHHHH---HHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCHH----HHHHHHc-C--CCEEEE----cCCCCCCCCCEEEeChHHHHHHHHH---HHH
Confidence 677788889999999999877642 2233333 4 566644 44443221 2444442 3333333 332
Q ss_pred HhhhhcCCceEEEEe
Q 009444 301 VEVESVENGVGIVKL 315 (534)
Q Consensus 301 ~~A~S~~~rv~iVEv 315 (534)
. .++ ++|.++--
T Consensus 123 ~--~G~-~~I~~i~~ 134 (289)
T 3k9c_A 123 E--LGH-RNIAHIDG 134 (289)
T ss_dssp H--TTC-CSEEEECC
T ss_pred H--CCC-CcEEEEeC
Confidence 2 354 56888754
No 50
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=56.64 E-value=43 Score=33.07 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCc-ccCCHHHHhhHhhcCCcceeecCC---CchHHHHHHHHHHhC
Q 009444 158 GINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDRG 233 (534)
Q Consensus 158 GmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~ 233 (534)
--+...+.+++.+...++..+|.-+..- ..+ ...-....+.+...|+.+...... ..++...+..+++.+
T Consensus 125 ~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~ 198 (392)
T 3lkb_A 125 SYSEQVVALLEYIAREKKGAKVALVVHP------SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAG 198 (392)
T ss_dssp CHHHHHHHHHHHHHHHCTTCEEEEEECS------SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEEeC------CchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcC
Confidence 3445566677776654455566554321 111 112222234456678877665432 357788889999999
Q ss_pred CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeec
Q 009444 234 INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (534)
Q Consensus 234 Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIP 269 (534)
.|++|+.+.+. .+..+.+.+++.|+++++++..
T Consensus 199 ~dav~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~ 231 (392)
T 3lkb_A 199 VEYVVHQNVAG---PVANILKDAKRLGLKMRHLGAH 231 (392)
T ss_dssp CCEEEEESCHH---HHHHHHHHHHHTTCCCEEEECG
T ss_pred CCEEEEecCcc---hHHHHHHHHHHcCCCceEEEec
Confidence 99998876432 3445667777889998887653
No 51
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=54.89 E-value=85 Score=29.66 Aligned_cols=88 Identities=8% Similarity=0.010 Sum_probs=54.8
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeec--CCCch
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RGGHD 221 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs--R~~~d 221 (534)
+.+||++...-.-|-...+++++.+.+.. ++ .++.- ..+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LK-VDLQI-------------------------------LAPPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------ECCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hC-cEEEE-------------------------------ECCCCcCCHHH
Confidence 56999999888888888899998887754 23 22221 1011 11233
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
..+.++.+...++|++++.+-+.... ....+.+.+.+ |+||.+
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~g--iPvV~~ 92 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKLN--IPVIAV 92 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHHT--CCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCC--CCEEEE
Confidence 45778888889999999988766521 11223334446 456654
No 52
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=54.09 E-value=1.5e+02 Score=28.06 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=51.4
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-chH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (534)
+.+||++...-..|-...++.++-+.+.. ++ .++. +..+... ...
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~l~--------------------------------~~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RG-ITLK--------------------------------IADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHH
Confidence 46899999876777777788887776653 22 2221 1111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcch-HHHHHHHHHHHHcCCceeEeee
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~-~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+.++.|...++|++++.+.+... .. ..+.+.+.+ ++||.+
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~--iPvV~~ 89 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAE--IPVFLL 89 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCC--CCEEEe
Confidence 466778888999999999876542 22 223334445 556654
No 53
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=52.99 E-value=1.4e+02 Score=27.46 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=66.7
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-chHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~ 223 (534)
.+||++...-.-|-...++.++-+.+.. ++ .++. +..+... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AG-YQLL--------------------------------LGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TS-CEEC--------------------------------CEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHHHH
Confidence 4799998766667777788887776653 22 1221 1111211 2234
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc-CCCCChhhHHHHHHHHHHHHHHh
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHVE 302 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~ai~~i~~~ 302 (534)
+.++.+...++|++++.+.+.+-. +.+.+.+.+ ++||.+ |.+.+.. -.++++|-. .....+.+.+..
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 117 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQR----THQLLEASN--TPVLEI----AELSSKASYLNIGVDHF-EVGKACTRHLIE- 117 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHHT--CCEEEE----SSSCSSSSSEEECBCHH-HHHHHHHHHHHT-
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE----eeccCCCCCCEEEEChH-HHHHHHHHHHHH-
Confidence 677888889999999998775532 223344445 456655 3333221 135565532 122223333332
Q ss_pred hhhcCCceEEEEe
Q 009444 303 VESVENGVGIVKL 315 (534)
Q Consensus 303 A~S~~~rv~iVEv 315 (534)
.++ ++|.++--
T Consensus 118 -~G~-~~i~~i~~ 128 (275)
T 3d8u_A 118 -QGF-KNVGFIGA 128 (275)
T ss_dssp -TTC-CCEEEEEC
T ss_pred -CCC-CeEEEEcC
Confidence 244 56877753
No 54
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=51.80 E-value=12 Score=38.77 Aligned_cols=54 Identities=9% Similarity=0.171 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC----------------CceeEeeeccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG----------------LQVAVAGIPKTID 273 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g----------------~~i~vvgIPkTID 273 (534)
...+++++.+++.++|.+|-|||--.+..|..++-.....+ -.+++|.||-|--
T Consensus 93 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTag 162 (408)
T 1oj7_A 93 ETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA 162 (408)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCc
Confidence 35788999999999999999999888888877765322111 3478999998853
No 55
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=50.79 E-value=15 Score=38.04 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
+..+++++.+++.+.|.+|-|||--++..|..++-. + .+++|.||-|
T Consensus 93 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~---~--~~p~i~IPTT 139 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID---T--GARIVIAPTI 139 (387)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH---T--TCEEEECCSS
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 457889999999999999999998888888877632 2 4789999998
No 56
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=50.05 E-value=18 Score=37.31 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEeeeccccccCc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 276 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~-------------g~~i~vvgIPkTIDNDI 276 (534)
+..+++++.+++.+.|.+|-|||--.+..|..++-..... .-.+++|.||-|--.|-
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 75 TAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 4578999999999999999999988888888776544210 11478999999875443
No 57
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=48.91 E-value=17 Score=37.34 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccC
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDND 275 (534)
+..+++++.+++.+.|.++-|||--++..|..++-. ++ +++|.||-|- .+
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~P~i~IPTTa-tg 124 (364)
T 3iv7_A 75 EVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---TA--LPIVAIPTTY-AG 124 (364)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS-SC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEcCCc-cc
Confidence 457899999999999999999998888888877652 34 6799999987 54
No 58
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=48.89 E-value=6.9 Score=39.82 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.++ |.++-|||--.+..|..++-. +...+++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 121 (343)
T 3clh_A 69 HSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSI---YFRGIDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEeCCch
Confidence 457899999999999 999999998777777666532 22347899999886
No 59
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=47.83 E-value=82 Score=29.21 Aligned_cols=121 Identities=9% Similarity=-0.023 Sum_probs=61.9
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
..+||++...-.-|-...++.++...+.. ++. ++.- ..+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 54 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HGY-QVLI-------------------------------GNSDNDIKKAQ 54 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-CEEE-------------------------------EECTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCC-EEEE-------------------------------EeCCCCHHHHH
Confidence 45899998776777777788888777653 332 2221 01111123345
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHH-HHHHcCCceeEeeeccccccCccccCCCCChhhHHHHHHHHHHHHHHh
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYK-EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVE 302 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e-~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~~~ 302 (534)
++++.+...++|++++.+.+ - . ..+ .+.+.+ ++||. +|++.+..+ ++++|-.- ....+.+.+..
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~--~-~---~~~~~l~~~~--iPvV~----~~~~~~~~~-~V~~D~~~-~g~~a~~~L~~- 119 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN--E-N---IIENTLTDHH--IPFVF----IDRINNEHN-GISTNHFK-GGQLQAEVVRK- 119 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG--H-H---HHHHHHHHC---CCEEE----GGGCC----------HHH-HHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEEecCC--h-H---HHHHHHHcCC--CCEEE----EeccCCCCC-eEEechHH-HHHHHHHHHHH-
Confidence 77888899999999998832 1 1 123 444555 45664 456665545 77776421 22233333332
Q ss_pred hhhcCCceEEEE
Q 009444 303 VESVENGVGIVK 314 (534)
Q Consensus 303 A~S~~~rv~iVE 314 (534)
..+ ++|.++-
T Consensus 120 -~G~-~~i~~i~ 129 (277)
T 3e61_A 120 -GKG-KNVLIVH 129 (277)
T ss_dssp -TTC-CSEEEEE
T ss_pred -CCC-CeEEEEe
Confidence 244 5677775
No 60
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=47.39 E-value=23 Score=36.13 Aligned_cols=48 Identities=25% Similarity=0.235 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.+.|.++-|||--++..|..++-. ++ +++|.||-|-
T Consensus 74 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~p~i~IPTTa 121 (353)
T 3hl0_A 74 EVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---TD--AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HC--CEEEEEECSS
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 357888999999999999999998888888877652 34 6899999987
No 61
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=46.92 E-value=21 Score=36.56 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC---------------CceeEeeeccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG---------------LQVAVAGIPKTID 273 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g---------------~~i~vvgIPkTID 273 (534)
...+++++.+++.++|.+|-|||--.+..|..++-.....+ -.+++|.||-|--
T Consensus 75 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 75 TVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 45789999999999999999999888888877765442111 1478999998874
No 62
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=46.76 E-value=19 Score=36.84 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.+.|.+|-|||--++..|..++-. ++ +++|.||-|-
T Consensus 76 ~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~~--~p~i~IPTT~ 123 (358)
T 3jzd_A 76 ESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---TG--MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS
T ss_pred HHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 356788999999999999999998888888877652 34 6799999884
No 63
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=46.16 E-value=1.7e+02 Score=27.29 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=61.9
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
..+||++...-..|-...++.++.+.+.. ++ .++.-+.+ +........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~~------------------------------~~~~~~~~~ 55 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHK-NG-YNLIIVYS------------------------------GSADPEEQK 55 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TT-CEEEEEC----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEEeC------------------------------CCCCHHHHH
Confidence 45899999877778888888888877753 22 23321100 000011123
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhh--HHHHHHHHHHHHHH
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAAHV 301 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~ai~~i~~ 301 (534)
+.++.+...++|++++.+.+.+- ...+.+.+.+ +++|.+-..++++ -.++++|- +...+++ .+..
T Consensus 56 ~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~~---~L~~ 122 (290)
T 3clk_A 56 HALLTAIERPVMGILLLSIALTD----DNLQLLQSSD--VPYCFLSMGFDDD----RPFISSDDEDIGYQATN---LLIN 122 (290)
T ss_dssp CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--CC----SCEEECCHHHHHHHHHH---HHHT
T ss_pred HHHHHHHhcCCCEEEEecccCCH----HHHHHHHhCC--CCEEEEcCCCCCC----CCEEEeChHHHHHHHHH---HHHH
Confidence 45667778899999999876542 1223343334 5677654333332 22455543 3333333 3332
Q ss_pred hhhhcCCceEEEE
Q 009444 302 EVESVENGVGIVK 314 (534)
Q Consensus 302 ~A~S~~~rv~iVE 314 (534)
.++ ++|.++-
T Consensus 123 --~G~-~~i~~i~ 132 (290)
T 3clk_A 123 --EGH-RQIGIAG 132 (290)
T ss_dssp --TTC-CSEEEES
T ss_pred --cCC-CEEEEEe
Confidence 244 5677764
No 64
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=46.08 E-value=1.8e+02 Score=26.82 Aligned_cols=126 Identities=12% Similarity=0.037 Sum_probs=65.0
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-chHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~ 223 (534)
.+||++...-..|-...+++++-+.+.. ++ .+++ +.++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADK-LG-YNLV--------------------------------VLDSQNNPAKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHH-cC-cEEE--------------------------------EeCCCCCHHHHH
Confidence 4788888766677777788888776653 22 2222 1111111 1224
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC--CCCChhhHHHHHHHHHHHHHH
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHV 301 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD--~S~GFdTAv~~~~~ai~~i~~ 301 (534)
+.++.+...++|++++.+.+.... ..+.+.+.+.+ +|||.+ |++.+..+ .+++.|-. .....+.+.+..
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 118 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQAN--IPVITL----DRQATKGEVVSHIASDNV-LGGKIAGDYIAK 118 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCSSSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CcEEEe----cCCCCCCceeEEEecChH-HHHHHHHHHHHH
Confidence 566777788999999987654321 11223344445 456644 55444322 24665531 112223333332
Q ss_pred hhhhcCCceEEEE
Q 009444 302 EVESVENGVGIVK 314 (534)
Q Consensus 302 ~A~S~~~rv~iVE 314 (534)
.... +++|.++-
T Consensus 119 ~g~g-~~~I~~i~ 130 (271)
T 2dri_A 119 KAGE-GAKVIELQ 130 (271)
T ss_dssp HHCT-TCEEEEEE
T ss_pred HcCC-CCeEEEEE
Confidence 2222 35677775
No 65
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=44.94 E-value=7.1 Score=40.82 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhH
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTA 288 (534)
...+++++.+.+.++ |.++-+||--.+..|..++-. +...+++|.||-|. +..+|-+.|--|+
T Consensus 107 ~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~---~~rgip~I~IPTTl---la~vDssvggkt~ 172 (390)
T 3okf_A 107 ETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC---YQRGVDFIQIPTTL---LSQVDSSVGGKTA 172 (390)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH---HHHHHTSSSCEEE
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH---hcCCCCEEEeCCCC---ccccccCcCCeEE
Confidence 457899999999999 699999998777777666432 22347899999997 3455555555444
No 66
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=44.66 E-value=1.9e+02 Score=26.64 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=44.8
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchH
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 222 (534)
+..+||++...-.-|=...++.++.+.+.+ ++ .++.-+. +. .....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~-~~~~~ 49 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KG-YRLSVID-------------------------------SL-TSQAG 49 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGG-GT-CEEEEEC-------------------------------SS-SSCSS
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CC-CchHH
Confidence 345899999887788888899998887754 33 2333211 11 11223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcc
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
.+.++.|...++|+++ ++.+..
T Consensus 50 ~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 50 TDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp SCHHHHHHTTCCSEEE-EESCC-
T ss_pred HHHHHHHHhCCCCEEE-ecCCCC
Confidence 4566778889999999 887665
No 67
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=44.57 E-value=13 Score=38.15 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEeeeccccccCcc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDNDIA 277 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-------------~g~~i~vvgIPkTIDNDI~ 277 (534)
...+++++.+++.+.|.++-|||--.+..|..++-.... ..-.+++|.||-|-..+-.
T Consensus 85 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgse 155 (371)
T 1o2d_A 85 DNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSE 155 (371)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhhh
Confidence 457888999999999999999998888888877654321 0034789999988665543
No 68
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=44.31 E-value=1.8e+02 Score=27.21 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=54.7
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
+++||++...-.-|=...+++++-+.+.. ++ .+++ ++.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LG-FEVI-------------------------------KIAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-EEEE-------------------------------EEEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EeCC-CCHHHHH
Confidence 57999999877778888888888877754 22 2222 1111 1122345
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
+.++.+...++|++++.+-+.... ..+.+.+.+.+ ++||.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCC--CcEEEe
Confidence 677888889999999998776532 22223444455 556644
No 69
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=44.00 E-value=2.2e+02 Score=27.23 Aligned_cols=86 Identities=10% Similarity=0.136 Sum_probs=50.9
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-ch
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HD 221 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d 221 (534)
+..+||++...-..|-...++.++-..+.. ++ .++. +..+... ..
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~ 107 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM-YK-YNMI--------------------------------LANSDNDVEK 107 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEECCCChHH
Confidence 345899998766667777778887776653 22 2222 1111111 22
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
....++.|...++|++++.+.+.+-.. .+.+.+.+ +++|.+
T Consensus 108 ~~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~~--iPvV~~ 148 (332)
T 2o20_A 108 EEKVLETFLSKQVDGIVYMGSSLDEKI----RTSLKNSR--TPVVLV 148 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCCCHHH----HHHHHHHC--CCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 346678888899999999987554322 23333445 456655
No 70
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=42.70 E-value=28 Score=35.60 Aligned_cols=54 Identities=7% Similarity=0.067 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH------c-------CCceeEeeeccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------R-------GLQVAVAGIPKTID 273 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~------~-------g~~i~vvgIPkTID 273 (534)
...+++++.+++.++|.+|-|||--.+..|..++-.... + .-.+++|.||-|--
T Consensus 79 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 145 (387)
T 3bfj_A 79 TNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAG 145 (387)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 457899999999999999999998888888777653211 1 02478999998873
No 71
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=42.66 E-value=2.1e+02 Score=26.89 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=51.3
Q ss_pred CeeEEEEccC-----CCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC
Q 009444 144 EVRACIVTCG-----GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG 218 (534)
Q Consensus 144 ~~riaIvtsG-----G~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~ 218 (534)
..+||++... -.-|=...++.++-..+.. ++ .++.- ..+..
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~ 67 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RG-YSTRM--------------------------------TVSEN 67 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HT-CEEEE--------------------------------CCCSS
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCC
Confidence 4589999876 4556666777777776653 22 23321 01111
Q ss_pred -CchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 219 -GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 219 -~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.....++++.+...++|++++.+.+.+-. ..+.+.+.+ ++||.+
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~i 112 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLIV 112 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEEE
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEEE
Confidence 12345678889999999999998776532 233444455 456644
No 72
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=42.33 E-value=20 Score=33.05 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=30.2
Q ss_pred CcccCCHHHHhhHhh----cCCcceeecCCCchHHHHHHHHHHh----CCcEEEEEcCCcc
Q 009444 193 NTLTLSPKVVNDIHK----RGGTILRTSRGGHDTNKIVDNIEDR----GINQVYIIGGDGT 245 (534)
Q Consensus 193 ~~~~L~~~~V~~i~~----~GGs~LGTsR~~~d~~~iv~~l~~~----~Id~LvvIGGdgS 245 (534)
++.+-+...+..+.. .|... ....-+.|.+.|.+.|++. +.|.+|+.||-|.
T Consensus 21 ~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 21 IYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp SSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 444444445555443 44443 3333345666666666553 7999999999763
No 73
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=41.86 E-value=2.2e+02 Score=26.42 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=54.8
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchH
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~ 222 (534)
+..+||++...-.-|=...++.++.+.+.. ++ .++.-+. +.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NK-YEALVAT-------------------------------SQNSRISE 53 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CSSCHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cC-CEEEEEC-------------------------------CCCCHHHH
Confidence 346899999887778888888888887754 33 2332110 11111234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+.++.|...++|++++.+.+..... .+.+.+.+.+ ++||.+
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~--iPvV~~ 95 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAG--IPVFAI 95 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcC--CCEEEe
Confidence 56778888899999999987765421 1223444445 556655
No 74
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=41.52 E-value=25 Score=36.35 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHhC---CcEEEEEcCCcchHHHHHHHHHHHHc-------------CCceeEeeeccccccC
Q 009444 220 HDTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDND 275 (534)
Q Consensus 220 ~d~~~iv~~l~~~~---Id~LvvIGGdgS~~~A~~L~e~~~~~-------------g~~i~vvgIPkTIDND 275 (534)
...+++++.+++.+ .|.+|-|||--++..|..++-..... .-.+++|.||-|--.|
T Consensus 93 ~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtg 164 (375)
T 3rf7_A 93 VQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTG 164 (375)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccc
Confidence 45788999999998 99999999988888888776543110 1147899999775433
No 75
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=40.93 E-value=55 Score=25.45 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=40.4
Q ss_pred eeecCCCchHHHHHHHHHHhCCc---------EEEEEcCCcchHHHHHHHHHHHHcCCce
Q 009444 213 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQV 263 (534)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id---------~LvvIGGdgS~~~A~~L~e~~~~~g~~i 263 (534)
+|+-+...+.++..+.|+..+++ +-|.+|.+.+...|..+.+.+++.|++.
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~ 73 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDA 73 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCce
Confidence 56666666788889999988887 4567888889899999988888878753
No 76
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=39.47 E-value=83 Score=31.23 Aligned_cols=110 Identities=11% Similarity=0.043 Sum_probs=68.3
Q ss_pred ccCCHHHHhhHhhcC-CcceeecCC-CchHHHHHHHHHHhCCcEEEEEc----CCcchHHHHHHHHHHH-Hc-CCceeEe
Q 009444 195 LTLSPKVVNDIHKRG-GTILRTSRG-GHDTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVE-KR-GLQVAVA 266 (534)
Q Consensus 195 ~~L~~~~V~~i~~~G-Gs~LGTsR~-~~d~~~iv~~l~~~~Id~LvvIG----GdgS~~~A~~L~e~~~-~~-g~~i~vv 266 (534)
++++++.+-.....| +...-||-- ..++.++.+.+.+.+ +.+++|. =.||+.+|...++.+. ++ +.+|.||
T Consensus 44 ~di~~~efy~~~~~~~~~~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi 122 (297)
T 3nyi_A 44 VDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI 122 (297)
T ss_dssp TTBCHHHHHHHHHHCTTCCCEEECCCHHHHHHHHHHHHTTT-CCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCCceecCCCHHHHHHHHHHHHHCC-CeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 578999888887776 567778775 357888888888778 7777773 5788988888876653 33 3454444
Q ss_pred eeccccccCccccCCCCChhhHHHHHHHHHH----------HHHHhhhhcCCceEEEEec
Q 009444 267 GIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN----------AAHVEVESVENGVGIVKLM 316 (534)
Q Consensus 267 gIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~----------~i~~~A~S~~~rv~iVEvM 316 (534)
|.- -.|.|..=.+..+++.++ .+..-... -+-+|+|+..
T Consensus 123 ------DS~----~~s~g~g~~v~~A~~l~~~G~s~~eI~~~l~~~~~~-~~~~f~v~~L 171 (297)
T 3nyi_A 123 ------DSK----QNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMAS-ARIFFTVGSL 171 (297)
T ss_dssp ------ECS----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CEEEEECSCS
T ss_pred ------eCC----chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-cEEEEEECCH
Confidence 211 124555555555555443 22222222 2347888876
No 77
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=39.45 E-value=72 Score=30.77 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=59.5
Q ss_pred chhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCc-ccCCHHHHhhHhhcCCcceeecC---CCchHHHHHHHHHHh
Q 009444 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDR 232 (534)
Q Consensus 157 PGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR---~~~d~~~iv~~l~~~ 232 (534)
|.-....+.+++.+...++..+|.-+... ..+ ..+.....+.+...|+++..... +..++...++.+++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 119 GRDDQQGGIAGKYLADHFKDAKVAIIHDK------TPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEA 192 (356)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEECS------SHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEEeCC------ChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 33344556666666554454455444321 111 11111123345566777655433 235778888999999
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeec
Q 009444 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (534)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIP 269 (534)
+.+++|+.+.+.. +..+.+.+++.|+++++++..
T Consensus 193 ~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~ 226 (356)
T 3ipc_A 193 GVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSGD 226 (356)
T ss_dssp TCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEECG
T ss_pred CCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEec
Confidence 9999887765433 334556677789988877643
No 78
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=39.30 E-value=2.3e+02 Score=26.09 Aligned_cols=124 Identities=7% Similarity=0.009 Sum_probs=64.7
Q ss_pred CCeeEEEEccC--CCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-C
Q 009444 143 DEVRACIVTCG--GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-G 219 (534)
Q Consensus 143 ~~~riaIvtsG--G~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~ 219 (534)
+..+||++... -..|-...++.++...+.. .+ .++.- -.+.. .
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~ 63 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLL--------------------------------ADGKHSA 63 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-CEEEE--------------------------------ECCTTSH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCCH
Confidence 34589999865 5567777788888777653 22 22221 11111 1
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-cCCceeEeeeccccccCccccCCCCChhh--HHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAI 296 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-~g~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~ai 296 (534)
....+.++.|...++|++++.+.+.+-. .+ +.+.+ .+ +++|.+-..+++. . -.++++|- +...+++
T Consensus 64 ~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~~--iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~-- 132 (296)
T 3brq_A 64 EEERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAHS--QPIMVLNRRLRKN--S-SHSVWCDHKQTSFNAVA-- 132 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTCS--SCEEEESCCCSSS--G-GGEECCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcCC--CCEEEEccccCCC--C-CCEEEEchHHHHHHHHH--
Confidence 2234567778889999999998865432 22 34444 45 5566553322221 1 12455553 3333333
Q ss_pred HHHHHhhhhcCCceEEEEe
Q 009444 297 NAAHVEVESVENGVGIVKL 315 (534)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEv 315 (534)
.+.. .++ ++|.++--
T Consensus 133 -~l~~--~G~-~~I~~i~~ 147 (296)
T 3brq_A 133 -ELIN--AGH-QEIAFLTG 147 (296)
T ss_dssp -HHHH--TTC-CSEEEECC
T ss_pred -HHHH--CCC-ceEEEEcC
Confidence 3332 244 56877743
No 79
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=38.73 E-value=1.9e+02 Score=26.95 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=46.2
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecC--CCc
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR--GGH 220 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR--~~~ 220 (534)
+..+||++...-.-|-...++.++.+.+.. ++ .++.- +.+.. ...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~ 50 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEK-QG-VNLRV-------------------------------LEAGGYPNKS 50 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------EECSSTTCHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CeEEE-------------------------------EcCCCCCCHH
Confidence 346899999877778888888888877754 23 22221 11111 112
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
...+.++.+...++|++++.+.+..
T Consensus 51 ~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 51 RQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3456778888899999999987755
No 80
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=38.57 E-value=28 Score=35.62 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHH
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (534)
...+++++.+.++++ |.++-+||--.+..|..++-.. .+| +++|.||-|. +.++|-+.|--|++
T Consensus 78 ~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl---la~tdS~v~~kt~I 144 (368)
T 2gru_A 78 STVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FRG--IALIHVPTTF---LAASDSVLSIKQAV 144 (368)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH---HHHHTTTSSCEEEE
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCch---HhhcCCCcCCeEEE
Confidence 346788899999985 9999999977777766655321 234 7899999997 56666666654444
No 81
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=37.55 E-value=55 Score=29.33 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=35.9
Q ss_pred chHHHHHHHHHH-hCCcEEEEEcCCcchHHHHHHHHHHHHc-CCceeEeeecccc
Q 009444 220 HDTNKIVDNIED-RGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~-~~Id~LvvIGGdgS~~~A~~L~e~~~~~-g~~i~vvgIPkTI 272 (534)
-|..-+++.++- ..+|.++++-||+-+.-+. +.++++ |.++-++|.|+..
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGS
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcC
Confidence 466666665532 5799999999999887754 445564 9888888887643
No 82
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=37.35 E-value=13 Score=37.86 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
+..+++++.+++.++ |.++-|||=-.+..|..++-. +...+++|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 120 (348)
T 1ujn_A 68 EVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAAT---YLRGVAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHH---hccCCCEEEecCcH
Confidence 457889999999998 899999998777777766532 22247899999874
No 83
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=37.15 E-value=26 Score=36.21 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCceeEeeeccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTID 273 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-------------~g~~i~vvgIPkTID 273 (534)
...+++++.+++.++|.+|-|||--.+..|..++-.... ..-.+++|.||-|--
T Consensus 88 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag 154 (407)
T 1vlj_A 88 SKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISA 154 (407)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 457899999999999999999998888888877653210 012478999998854
No 84
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=36.77 E-value=82 Score=29.76 Aligned_cols=68 Identities=16% Similarity=0.061 Sum_probs=44.1
Q ss_pred CeeEEEEccCCCCchhh-HHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-Cch
Q 009444 144 EVRACIVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmN-avIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d 221 (534)
..+||++...-.-|-.. .++.++.+.+.. ++ .+++- -.+.. ...
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~ 58 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANA-NG-KTILI--------------------------------ANTGGSSER 58 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHH
Confidence 35788888766666677 788887777654 23 23321 11111 123
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
..+.++.|...++|++++.+.+..
T Consensus 59 ~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 59 EVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEecCCcc
Confidence 457788889999999999987654
No 85
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=36.73 E-value=2.6e+02 Score=25.82 Aligned_cols=121 Identities=9% Similarity=0.077 Sum_probs=66.4
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (534)
..+||++...-..|-...+++++-..+.. ++ .++. +..+.. ....
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 52 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLI--------------------------------LGNAWNNLEKQ 52 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEE--------------------------------EEcCCCChHHH
Confidence 45899999776677777788888777653 22 2221 111111 1234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-cCCceeEeeeccccccCccccC--CCCChh--hHHHHHHHHHH
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVID--KSFGFD--TAVEEAQRAIN 297 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~-~g~~i~vvgIPkTIDNDI~gtD--~S~GFd--TAv~~~~~ai~ 297 (534)
.+.++.|...++|++++.+.+.+-.. .+.+.+ .+ +++|.+ |.+.+..+ .++++| .+...+++.
T Consensus 53 ~~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~~~~~~~~~~-- 120 (289)
T 1dbq_A 53 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEYRH--IPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRY-- 120 (289)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCCHHH----HHHHHHTTT--SCEEEE----ECSSCCSSSCEEEEECHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEEeccCCHHH----HHHHHhccC--CCEEEE----ccCCCccCcCCEEEeCcHHHHHHHHHH--
Confidence 46678888899999999988765322 223333 34 566654 34333322 255555 333333333
Q ss_pred HHHHhhhhcCCceEEEE
Q 009444 298 AAHVEVESVENGVGIVK 314 (534)
Q Consensus 298 ~i~~~A~S~~~rv~iVE 314 (534)
+.. .++ ++|.++-
T Consensus 121 -L~~--~G~-~~i~~i~ 133 (289)
T 1dbq_A 121 -LIE--RGH-REIGVIP 133 (289)
T ss_dssp -HHH--TTC-CSEEEEC
T ss_pred -HHH--CCC-CeEEEEe
Confidence 322 244 5687773
No 86
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=36.36 E-value=90 Score=29.65 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=56.5
Q ss_pred EEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEccccccccc---------CCcccCCHHHHhhHhhcCCcceeecCC
Q 009444 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG 218 (534)
Q Consensus 148 aIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR~ 218 (534)
+++.+||+.+-.- . ...-++|+-.|..=|++ |++-.++.+....+...|=.++--...
T Consensus 4 ~~I~~gG~~~~~~----------~---~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~e 70 (218)
T 3ihk_A 4 VALFSGGDLTYFT----------R---DFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAE 70 (218)
T ss_dssp EEEECSSCCSCCC----------C---CCSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCSS
T ss_pred EEEEECCCCccCc----------c---cCCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCC
Confidence 5666788876321 0 12468888888877654 345556766666666554334432232
Q ss_pred C--chHHHHHHHHHHh-CCcEEEEEcCCcc
Q 009444 219 G--HDTNKIVDNIEDR-GINQVYIIGGDGT 245 (534)
Q Consensus 219 ~--~d~~~iv~~l~~~-~Id~LvvIGGdgS 245 (534)
+ -|++++++.+.++ +.+-++++|+.|.
T Consensus 71 KD~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 71 KNDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp CSSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred CCCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 2 4789999988877 8999999999997
No 87
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=36.09 E-value=2.3e+02 Score=27.13 Aligned_cols=105 Identities=19% Similarity=0.342 Sum_probs=59.4
Q ss_pred EEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccC---------CcccCCHHHHhhHhhcCCcceeecCC
Q 009444 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK---------NTLTLSPKVVNDIHKRGGTILRTSRG 218 (534)
Q Consensus 148 aIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~---------~~~~L~~~~V~~i~~~GGs~LGTsR~ 218 (534)
++|.+||+.|- ....+.+. ... ..++|+-.|..=|++. ++--++++....+.. .+.-....
T Consensus 34 v~Iv~~G~~~~-~~~~~~~~----~~~--~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~---~i~~~~~k 103 (231)
T 2omk_A 34 AIILANGEYPA-HELPLRLL----AEA--QFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS---IILQISDQ 103 (231)
T ss_dssp EEEECSSSCCC-SHHHHHHH----HHC--SCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG---GEECCCSS
T ss_pred EEEEECCCCch-hHHHHHHH----hcC--CEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC---EEEeCCCC
Confidence 55667787662 22233222 222 2589999998877653 343455554444431 12211111
Q ss_pred -CchHHHHHHHHHHhCCcEEEEEcCCcc-----hHHHHHHHHHHHHcCCce
Q 009444 219 -GHDTNKIVDNIEDRGINQVYIIGGDGT-----QKGAALIYKEVEKRGLQV 263 (534)
Q Consensus 219 -~~d~~~iv~~l~~~~Id~LvvIGGdgS-----~~~A~~L~e~~~~~g~~i 263 (534)
.-|.++++....+++.+-++++|+.|. +.....|.++ .+++.++
T Consensus 104 D~TD~e~Al~~a~~~g~~~I~i~Ga~GgRlDH~laNi~lL~~~-~~~~~~i 153 (231)
T 2omk_A 104 ETNDQTKAVHYLQSKGIRKIAIVGATGKREDHTLGNISLLVEY-MRSGMEV 153 (231)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEEESCSSSCHHHHHHHHHHHHHH-HHTTCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECccCCchhHHHHHHHHHHHH-HhcCCeE
Confidence 237999999999999999999999986 4444445544 3334443
No 88
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=36.06 E-value=2.2e+02 Score=27.35 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=60.6
Q ss_pred chhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeec--CCCchHHHHHHHHHHhCC
Q 009444 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RGGHDTNKIVDNIEDRGI 234 (534)
Q Consensus 157 PGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs--R~~~d~~~iv~~l~~~~I 234 (534)
|.-....+.+++.+...++..+|.-+. +-..-+. ..+.......+...|+.+.... .+..++...++.++..+.
T Consensus 130 ~~~~~~~~~~~~~l~~~~g~~~iaii~-~~~~~~~---~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~ 205 (366)
T 3td9_A 130 FIDPFQGAAMAVFAYKNLGAKRVVVFT-DVEQDYS---VGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNP 205 (366)
T ss_dssp CCHHHHHHHHHHHHHHTSCCCEEEEEE-ETTCHHH---HHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHhcCCcEEEEEE-eCCCcHH---HHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCC
Confidence 333445566677765444555555442 1110000 1111112334556777766553 233577888999999999
Q ss_pred cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeec
Q 009444 235 NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (534)
Q Consensus 235 d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIP 269 (534)
+++|+.+-+. .+..+.+.+++.|+++++++..
T Consensus 206 d~v~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~ 237 (366)
T 3td9_A 206 DAIYITGYYP---EIALISRQARQLGFTGYILAGD 237 (366)
T ss_dssp SEEEECSCHH---HHHHHHHHHHHTTCCSEEEECG
T ss_pred CEEEEccchh---HHHHHHHHHHHcCCCceEEeeC
Confidence 9998865432 3444567777889988877653
No 89
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=35.94 E-value=2.7e+02 Score=25.89 Aligned_cols=122 Identities=13% Similarity=0.066 Sum_probs=67.0
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-CchH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (534)
..+||++...-..|=...++.++.+.+.. ++ .++.- ..+.. ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 53 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRA-VH-RHVVV--------------------------------ATGCGESTPR 53 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------ECCCSSSCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCchhhh
Confidence 45899998766667777788888777653 22 23321 01111 1223
Q ss_pred HH---HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc-CCCCChhh--HHHHHHHHH
Q 009444 223 NK---IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDT--AVEEAQRAI 296 (534)
Q Consensus 223 ~~---iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFdT--Av~~~~~ai 296 (534)
.+ .++.+...++|++++.+.+.+.. ..+.+.+.+ ++||.+ |.+.+.. -.++++|- +...+++
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~-- 121 (290)
T 2rgy_A 54 EQALEAVRFLIGRDCDGVVVISHDLHDE----DLDELHRMH--PKMVFL----NRAFDALPDASFCPDHRRGGELAAA-- 121 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHH----HHHHHHHHC--SSEEEE----SSCCTTSGGGEECCCHHHHHHHHHH--
T ss_pred hhHHHHHHHHHhcCccEEEEecCCCCHH----HHHHHhhcC--CCEEEE----ccccCCCCCCEEEeCcHHHHHHHHH--
Confidence 44 77888899999999998876522 223334445 456655 3333221 12455553 3333333
Q ss_pred HHHHHhhhhcCCceEEEEe
Q 009444 297 NAAHVEVESVENGVGIVKL 315 (534)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEv 315 (534)
.+.. .++ ++|.+|--
T Consensus 122 -~L~~--~G~-~~I~~i~~ 136 (290)
T 2rgy_A 122 -TLIE--HGH-RKLAVISG 136 (290)
T ss_dssp -HHHH--TTC-CSEEEEES
T ss_pred -HHHH--CCC-ceEEEEeC
Confidence 3332 244 56888753
No 90
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=34.97 E-value=1.7e+02 Score=28.70 Aligned_cols=139 Identities=17% Similarity=0.258 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCcEE--EEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC---------CCCChhhHHH
Q 009444 222 TNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID---------KSFGFDTAVE 290 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~L--vvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD---------~S~GFdTAv~ 290 (534)
+++..+.+++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|= .| |.-| ..+-..+-++
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPf---SD-P~aDGp~Iq~a~~~AL~~G~~~~ 80 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPF---SD-PLADGPVIQGANLRSLAAGTTSS 80 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC---SC-CTTCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CC-CCCCCHHHHHHHHHHHHcCCCHH
Confidence 3455666666555555 788999999999999999999999988889885 12 2222 1111222233
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEecCCCc-----chHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhCCc
Q 009444 291 EAQRAINAAHVEVESVENGVGIVKLMGRYS-----GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH 365 (534)
Q Consensus 291 ~~~~ai~~i~~~A~S~~~rv~iVEvMGR~s-----G~LAl~aaLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~~~ 365 (534)
.+-+.+..++..-...+ +. +||=.- |.-.....++..|+|.+++|-.|+.. .+.+.+..++.+-
T Consensus 81 ~~~~~v~~ir~~~~~~P--iv---lm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee------~~~~~~~~~~~gl 149 (267)
T 3vnd_A 81 DCFDIITKVRAQHPDMP--IG---LLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEE------SAPFSKAAKAHGI 149 (267)
T ss_dssp HHHHHHHHHHHHCTTCC--EE---EEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGG------CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhh------HHHHHHHHHHcCC
Confidence 44566666665422223 22 465311 32222222222289999999888732 2334445555553
Q ss_pred -EEEEEeCCCC
Q 009444 366 -MVIVVAEGAG 375 (534)
Q Consensus 366 -~vIVvaEGa~ 375 (534)
.+.+++=...
T Consensus 150 ~~i~liaP~t~ 160 (267)
T 3vnd_A 150 APIFIAPPNAD 160 (267)
T ss_dssp EEECEECTTCC
T ss_pred eEEEEECCCCC
Confidence 4556665543
No 91
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=34.95 E-value=56 Score=25.73 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=40.8
Q ss_pred eeecCCCchHHHHHHHHHHhCCc---------EEEEEcCCcchHHHHHHHHHHHHcCCcee
Q 009444 213 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQVA 264 (534)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id---------~LvvIGGdgS~~~A~~L~e~~~~~g~~i~ 264 (534)
+|+-+...+.++..+.|+..++. +-|.+|.+.+...|..+.+.+++.|++..
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 45656666788899999988887 45778899898999988888888787643
No 92
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=34.80 E-value=70 Score=31.33 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
+.+.++++.|++.|.+++++-.-.-+. ....|.+ .+++||+||
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~-----~~~iPvigi 128 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAHY-WFDDLQN-----VAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHHHH-----HCSSEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHH-----HCCCCEEcc
Confidence 567888999999999977766554333 3344433 357889986
No 93
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=34.68 E-value=2e+02 Score=28.25 Aligned_cols=137 Identities=15% Similarity=0.227 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhCCcEE--EEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC---------CCCChhhHHH
Q 009444 222 TNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID---------KSFGFDTAVE 290 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~L--vvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD---------~S~GFdTAv~ 290 (534)
+++..+.+++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|= .| |.-| ..+-..+-++
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPf---SD-P~aDGpvIq~a~~rAL~~G~~~~ 82 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPF---SD-PLADGPTIQGANLRALAAKTTPD 82 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC---CC-GGGCCSHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CC-CCCCCHHHHHHHHHHHHcCCCHH
Confidence 4566677776665555 788999999999999999999999988899995 12 1111 0111111222
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEecCCCc-----chHHHHH-hhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhCC
Q 009444 291 EAQRAINAAHVEVESVENGVGIVKLMGRYS-----GFISMYA-TLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (534)
Q Consensus 291 ~~~~ai~~i~~~A~S~~~rv~iVEvMGR~s-----G~LAl~a-aLAs~~ad~ilIPE~pf~le~~~~l~e~I~~rl~~~~ 364 (534)
.+-+.+..++..-...+ +. +||=.- |.-.... +... |+|.++||..|+.. .+.+.+..++.+
T Consensus 83 ~~~~~v~~~r~~~~~~P--iv---lm~Y~n~v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee------~~~~~~~~~~~g 150 (271)
T 3nav_A 83 ICFELIAQIRARNPETP--IG---LLMYANLVYARGIDDFYQRCQKA-GVDSVLIADVPTNE------SQPFVAAAEKFG 150 (271)
T ss_dssp HHHHHHHHHHHHCTTSC--EE---EEECHHHHHHTCHHHHHHHHHHH-TCCEEEETTSCGGG------CHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHHhHHHHHHHHHHC-CCCEEEECCCCHHH------HHHHHHHHHHcC
Confidence 34455666654322222 22 454211 3322222 2233 89999999888732 233455555555
Q ss_pred c-EEEEEeCCC
Q 009444 365 H-MVIVVAEGA 374 (534)
Q Consensus 365 ~-~vIVvaEGa 374 (534)
- .|.+++-..
T Consensus 151 l~~I~lvap~t 161 (271)
T 3nav_A 151 IQPIFIAPPTA 161 (271)
T ss_dssp CEEEEEECTTC
T ss_pred CeEEEEECCCC
Confidence 3 344665444
No 94
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=33.98 E-value=1.4e+02 Score=26.74 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=53.2
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHH-HhhHhhcCCcceeecCC-C-
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV-VNDIHKRGGTILRTSRG-G- 219 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~-V~~i~~~GGs~LGTsR~-~- 219 (534)
.+.||.+.+.||+.--+-.-+-+.. ... .|.+|+ |.|. ..+.+. ++......-.++|.|-. .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~---l~~-~G~eVi-----~lG~------~~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARA---LRD-AGFEVV-----YTGL------RQTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHH---HHH-TTCEEE-----CCCS------BCCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH---HHH-CCCEEE-----ECCC------CCCHHHHHHHHHhcCCCEEEEEeechh
Confidence 3568999999998865554333322 122 334665 1121 245554 34455555667775543 2
Q ss_pred --chHHHHHHHHHHhCC-cEEEEEcCCcc
Q 009444 220 --HDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (534)
Q Consensus 220 --~d~~~iv~~l~~~~I-d~LvvIGGdgS 245 (534)
..+.++++.|++.+. +..+++||.-.
T Consensus 82 ~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 82 HLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 457888899999887 67889998654
No 95
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=33.44 E-value=43 Score=33.86 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
...+++++.++++++ |.++-|||--.+..|..++-. +.-.+++|.||-|.
T Consensus 74 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~---~~rgip~i~IPTT~ 126 (354)
T 1xah_A 74 EQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAAT---LLRGVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECST
T ss_pred HHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEECCcc
Confidence 457899999999999 999999998888777766532 22347899999887
No 96
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=33.12 E-value=3.3e+02 Score=26.05 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=46.8
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCch
Q 009444 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (534)
Q Consensus 142 ~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d 221 (534)
.+..||||++.- .=|.++++-.|+...|.. .+ | .++.-+++. +.+..| ....
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~-~G----------~---~~g~nv~~~------~~~a~g-------d~~~ 57 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKA-KG----------Y---EEGKNLEFD------YKTAQG-------NPAI 57 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHH-TT----------C---CBTTTEEEE------EEECTT-------CHHH
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHh-hC----------c---ccCCcEEEE------EEeCCC-------CHHH
Confidence 467899999874 679999999999988864 22 1 122212221 011111 1124
Q ss_pred HHHHHHHHHHhCCcEEEEEcC
Q 009444 222 TNKIVDNIEDRGINQVYIIGG 242 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGG 242 (534)
...+++.|...++|.++.||.
T Consensus 58 ~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 58 AVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp HHHHHHHHHTTCCSEEEEESH
T ss_pred HHHHHHHHHhcCCcEEEEcCC
Confidence 678899999999998888763
No 97
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=32.20 E-value=2.3e+02 Score=27.15 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=64.8
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-chH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (534)
..+||++...-..|-...++.++-+.+.. ++ .++. +..+... ...
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 105 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATM-YK-YNII--------------------------------LSNSDQNQDKE 105 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECCSHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCChHHH
Confidence 45899998766677778888888777753 22 2222 1111111 123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc-CCCCChhh--HHHHHHHHHHHH
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDT--AVEEAQRAINAA 299 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFdT--Av~~~~~ai~~i 299 (534)
...++.|...++|++++.+.+.+-. ..+.+.+.+ +++|.+ |.+.+.. -.++++|- +...+++ .+
T Consensus 106 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~~~~a~~---~L 172 (332)
T 2hsg_A 106 LHLLNNMLGKQVDGIIFMSGNVTEE----HVEELKKSP--VPVVLA----ASIESTNQIPSVTIDYEQAAFDAVQ---SL 172 (332)
T ss_dssp HHHHHHTSCCSSCCEEECCSSCCHH----HHHHHTTSS--SCEEEE----SCCCSCTTSCEEEECHHHHHHHHHH---HH
T ss_pred HHHHHHHHhCCCcEEEEecCCCCHH----HHHHHHhCC--CCEEEE----ccccCCCCCCEEEEChHHHHHHHHH---HH
Confidence 4566777778999999998765532 223333334 566655 3333221 12455543 3333333 33
Q ss_pred HHhhhhcCCceEEEEe
Q 009444 300 HVEVESVENGVGIVKL 315 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEv 315 (534)
.. .++ ++|.++--
T Consensus 173 ~~--~G~-~~I~~i~~ 185 (332)
T 2hsg_A 173 ID--SGH-KNIAFVSG 185 (332)
T ss_dssp HT--TTC-SCEEEEES
T ss_pred HH--CCC-CEEEEEeC
Confidence 22 254 56888753
No 98
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=32.03 E-value=68 Score=30.00 Aligned_cols=123 Identities=8% Similarity=-0.045 Sum_probs=63.9
Q ss_pred CCeeEEEEcc-CCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCch
Q 009444 143 DEVRACIVTC-GGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (534)
Q Consensus 143 ~~~riaIvts-GG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d 221 (534)
+..+|||+.. .-.-|-...++.++-+.+.+ ++. ++.-+. +......
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~ 56 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAK-QNY-NYNVVI-------------------------------CPYKTDC 56 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHH-TTT-CSEEEE-------------------------------EEECTTC
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHH-cCC-eEEEEe-------------------------------cCCCchh
Confidence 3458999986 55677788888888777754 232 221100 0000111
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhh--HHHHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAA 299 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~ai~~i 299 (534)
..++++.+...++|++++.+-+... ..+.+ .....++||.+ |.+.+.. .++++|- +...+++ .+
T Consensus 57 ~~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~---~~~~~iPvV~~----~~~~~~~-~~V~~D~~~~~~~a~~---~L 122 (289)
T 3g85_A 57 LHLEKGISKENSFDAAIIANISNYD---LEYLN---KASLTLPIILF----NRLSNKY-SSVNVDNYKMGEKASL---LF 122 (289)
T ss_dssp GGGCGGGSTTTCCSEEEESSCCHHH---HHHHH---HCCCSSCEEEE----SCCCSSS-EEEEECHHHHHHHHHH---HH
T ss_pred HHHHHHHHhccCCCEEEEecCCccc---HHHHH---hccCCCCEEEE----CCCCCCC-CEEEeCHHHHHHHHHH---HH
Confidence 2234455667899999998876443 22222 12334667754 4444332 2455443 3333333 33
Q ss_pred HHhhhhcCCceEEEEe
Q 009444 300 HVEVESVENGVGIVKL 315 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEv 315 (534)
.. ..+ ++|.++--
T Consensus 123 ~~--~G~-~~i~~i~~ 135 (289)
T 3g85_A 123 AK--KRY-KSAAAILT 135 (289)
T ss_dssp HH--TTC-CBCEEEEC
T ss_pred HH--cCC-CEEEEEeC
Confidence 32 244 56777754
No 99
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=32.00 E-value=3.6e+02 Score=26.09 Aligned_cols=85 Identities=11% Similarity=0.185 Sum_probs=48.6
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-chH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (534)
..+||++...-.-|-...++.++-..+.. .+ .+++ +..+... ...
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 111 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASK-AG-LATI--------------------------------ITNSNEDATTM 111 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 35799998765566667777777766643 22 1211 1111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
...++.|...++|++++.+.+..-. ..+.+.+.+ +++|.+
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~i 151 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECAN----QLEDLQKQG--MPVVLV 151 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGHH----HHHHHHHC---CCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEE
Confidence 4677888889999999998765521 223444445 556655
No 100
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=31.17 E-value=2.3e+02 Score=26.70 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=40.3
Q ss_pred CchHHHHHHHHHHhCCcEEEEEcCCc---------chHHHHHHHHHHHHcCCceeEeeecc
Q 009444 219 GHDTNKIVDNIEDRGINQVYIIGGDG---------TQKGAALIYKEVEKRGLQVAVAGIPK 270 (534)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LvvIGGdg---------S~~~A~~L~e~~~~~g~~i~vvgIPk 270 (534)
..++++.++.+++.|++++=+..... +...+..+.+.++++|+.+..++.|.
T Consensus 29 ~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 29 GECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 35789999999999999988776543 34556778888888999877777664
No 101
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.87 E-value=1.2e+02 Score=24.95 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=48.3
Q ss_pred hHhhcCCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCc
Q 009444 204 DIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ 262 (534)
Q Consensus 204 ~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~ 262 (534)
.-++.+|..|.|.-..+|...|++.++..+--.++.+-|- |....+.+..++++.|..
T Consensus 22 akhnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvs 79 (112)
T 2lnd_A 22 AKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCE
T ss_pred hhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcc
Confidence 3578889999998888999999999999998887777775 566778888888888865
No 102
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=30.84 E-value=77 Score=29.26 Aligned_cols=90 Identities=17% Similarity=0.303 Sum_probs=53.0
Q ss_pred ceeecCCCchHHHHHHHHHHhCCcEEEEEcCC-cchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhhHHH
Q 009444 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD-GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (534)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGd-gS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (534)
+.+--|+.+.+.+++++.++.+++.+|.+-|- +.+-+.. +- ....||||||-... ++. |.|
T Consensus 37 V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~-~l~------G~d---- 98 (163)
T 3ors_A 37 VVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMV--AS-----LTTLPVIGVPIETK-SLK------GID---- 98 (163)
T ss_dssp ECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCT-TTT------THH----
T ss_pred EECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCCCC-CCC------CHH----
Confidence 34445777778888888888999977766544 4444432 21 13578999996433 221 333
Q ss_pred HHHHHHHHHHHhhhhcCCce--EEEEec---CCCcchHHHHH
Q 009444 291 EAQRAINAAHVEVESVENGV--GIVKLM---GRYSGFISMYA 327 (534)
Q Consensus 291 ~~~~ai~~i~~~A~S~~~rv--~iVEvM---GR~sG~LAl~a 327 (534)
.+..... ++.+| ..|=.= |.++|++|...
T Consensus 99 -------sLlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 99 -------SLLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp -------HHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred -------HHHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHH
Confidence 2222222 34454 666553 67788887654
No 103
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=30.82 E-value=48 Score=33.29 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=56.2
Q ss_pred EEEEEcccccccccCCcccCCHHHHhhHhhcCCc-ce-eecCC--CchHHHHHHHHHHhCCcEEEEEcCCcc--------
Q 009444 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-------- 245 (534)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs-~L-GTsR~--~~d~~~iv~~l~~~~Id~LvvIGGdgS-------- 245 (534)
.-+-|.+|-.|- ...-+...+..+...|=. +. =|||. ..+++..+..++..||+.++++.||-.
T Consensus 44 d~vsVT~~~~g~----~r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~ 119 (310)
T 3apt_A 44 AFVSITYGAMGS----TRERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRP 119 (310)
T ss_dssp SEEEECCCSTTC----SHHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCC
T ss_pred CEEEEecCCCCC----cchhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCC
Confidence 456666766553 222344455556533322 21 25554 356888899999999999999999932
Q ss_pred ----hHHHHHHHHHHHHc-C--CceeEeeec
Q 009444 246 ----QKGAALIYKEVEKR-G--LQVAVAGIP 269 (534)
Q Consensus 246 ----~~~A~~L~e~~~~~-g--~~i~vvgIP 269 (534)
+..|..|.+.+++. | +.|-+.+-|
T Consensus 120 ~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 120 HPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp CTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 44577787777765 4 566666666
No 104
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=30.79 E-value=22 Score=36.34 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCC
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~G 284 (534)
..+++++.+++ +.|.+|-|||--.+..|..++-. ++ +++|.||-| ++||-..+
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTT-----a~tgSevt 135 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---LK--KPVVIVPTI-----ASTDAPCS 135 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS-----CCCSCTTS
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCc-----cccCcccC
Confidence 56777777777 99999999998888888877732 34 679999988 66664444
No 105
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=30.27 E-value=2.2e+02 Score=26.92 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=40.5
Q ss_pred hHhhcCCcceeecC---CCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 204 DIHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 204 ~i~~~GGs~LGTsR---~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.+...|+++..... +..+...+++.|++.+.+++|+.+.+. .+..+.+.+++.|+++++++.
T Consensus 161 ~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~---~a~~~~~~~~~~g~~~~~~~~ 225 (346)
T 1usg_A 161 GLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYP---EMGQMLRQARSVGLKTQFMGP 225 (346)
T ss_dssp HHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH---HHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcch---HHHHHHHHHHHcCCCCeEEec
Confidence 34456776655322 234667788888888999998876322 233455667778988877654
No 106
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=29.74 E-value=1.7e+02 Score=28.16 Aligned_cols=100 Identities=12% Similarity=0.123 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCc-ccCCHHHHhhHhhcCCcceeecC---CCchHHHHHHHHHHhCC
Q 009444 159 INTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDRGI 234 (534)
Q Consensus 159 mNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR---~~~d~~~iv~~l~~~~I 234 (534)
-....+.+++.+.. .+..+|.-+.. +..+ .+.-....+.+...|+.+..... +..++...++.+++.+.
T Consensus 135 ~~~~~~~~~~~l~~-~g~~~ia~i~~------~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 207 (375)
T 4evq_A 135 NGQIGRATGDAMIK-AGLKKAVTVTW------KYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKP 207 (375)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEEE------SSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCC
T ss_pred hHhHHHHHHHHHHH-cCCcEEEEEec------CchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCC
Confidence 34455666777664 34445444421 1111 11111122345566776654432 23567888888999999
Q ss_pred cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 235 NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 235 d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
+++|+.+.+. .|..+.+.+++.|+++++++.
T Consensus 208 dai~~~~~~~---~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 208 DCVYAFFSGG---GALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp SEEEEECCTH---HHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEecCcc---hHHHHHHHHHHcCCCceEEec
Confidence 9999876553 344455667788999888875
No 107
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=29.49 E-value=3.2e+02 Score=24.77 Aligned_cols=89 Identities=9% Similarity=-0.020 Sum_probs=53.2
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (534)
+|||++...-.-|-...+++++.+.+.+ ++ .++.-+. .+ +........+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------~~----------------~~~~~~~~~~ 49 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADE-AG-VTLLHRS-------------TK----------------DDGDIAGQIQ 49 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHH-HT-CEEEECC-------------CS----------------STTCHHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEEC-------------CC----------------CCCCHHHHHH
Confidence 4899999888888889999998887764 22 2222100 00 0111123346
Q ss_pred HHHHHHHhC-CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 225 IVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 225 iv~~l~~~~-Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
.++.|...+ +|++++.+-+..... ...+.+.+.+ +++|.+
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~~--~~~~~~~~~~--ipvV~~ 90 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDLT--PSVAQYRARN--IPVLVV 90 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTTH--HHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHHH--HHHHHHHHCC--CcEEEE
Confidence 778888888 999999986533211 1223344445 556655
No 108
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=28.60 E-value=22 Score=37.71 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChhh
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFdT 287 (534)
..+++++.+++ +.|.+|-|||--.+..|..++-. ++ +++|.||-| ++||-..|--+
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~g--iP~I~IPTT-----AgtgSevt~~a 189 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---MN--LPSIICPTT-----ASSDAATSSLS 189 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS-----CSCSCTTCSEE
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEEeCC-----CccCcccCCce
Confidence 45667777777 99999999998888888877732 34 679999998 66665554333
No 109
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=28.49 E-value=1.6e+02 Score=29.56 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhc-CCc-ce-eecCC--CchHHHHHHHHHHhCCcEE
Q 009444 163 IREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR-GGT-IL-RTSRG--GHDTNKIVDNIEDRGINQV 237 (534)
Q Consensus 163 Ir~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~-GGs-~L-GTsR~--~~d~~~iv~~l~~~~Id~L 237 (534)
++..++.+.. .+ ...+-|-+|-.|... +-+...+..+.+. |=. +. =|||. ..+++..+..++..||+-+
T Consensus 41 l~~~~~~l~~-l~-p~fvsVT~gagg~~r----~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nI 114 (304)
T 3fst_A 41 LWNSIDRLSS-LK-PKFVSVTYGANSGER----DRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHI 114 (304)
T ss_dssp HHHHHHHHHT-TC-CSEEEECCCTTSSCH----HHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhc-CC-CCEEEEeeCCCCcch----hHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEE
Confidence 3334444442 22 345667777666432 2233344455543 322 21 24554 4578888999999999999
Q ss_pred EEEcCCcc------hHHHHHHHHHHHHc-CCceeEeeec
Q 009444 238 YIIGGDGT------QKGAALIYKEVEKR-GLQVAVAGIP 269 (534)
Q Consensus 238 vvIGGdgS------~~~A~~L~e~~~~~-g~~i~vvgIP 269 (534)
+++.||-. +..|..|.+.+++. ++.|.|.+-|
T Consensus 115 LaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 115 VALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp EEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 99999843 44477777776653 5777777666
No 110
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=27.94 E-value=30 Score=34.86 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI 276 (534)
..+++ +.+++.+.|.++-|||--.+..|..++ +. ++ +++|.||-|.-.|-
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tgs 126 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSNDG 126 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSGG
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCCC
Confidence 45667 777778999999999988888888776 33 34 67999999876543
No 111
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.90 E-value=3.7e+02 Score=24.92 Aligned_cols=123 Identities=11% Similarity=-0.015 Sum_probs=65.8
Q ss_pred CCeeEEEEccCCCC--chhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCc
Q 009444 143 DEVRACIVTCGGLC--PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (534)
Q Consensus 143 ~~~riaIvtsGG~a--PGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~ 220 (534)
+..+|||+...-.- |=...++.++-+.+.+ ++ .++.-+. +.....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~ 53 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-YHLVVTP-------------------------------HIHAKD 53 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-CEEEECC-------------------------------BSSGGG
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-CEEEEec-------------------------------CCcchh
Confidence 34589999875443 7778888888777643 22 2332100 000112
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccC-CCCChhh--HHHHHHHHHH
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAIN 297 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD-~S~GFdT--Av~~~~~ai~ 297 (534)
....+.+.+...++|++++.+.+..-.. .+.+.+.+ ++||. +|++.+..+ .++++|- +...+++.
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~----i~~~~~~~~~~~V~~D~~~~g~~a~~~-- 121 (288)
T 3gv0_A 54 SMVPIRYILETGSADGVIISKIEPNDPR----VRFMTERN--MPFVT----HGRSDMGIEHAFHDFDNEAYAYEAVER-- 121 (288)
T ss_dssp TTHHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTT--CCEEE----ESCCCSSCCCEEEEECHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCC--CCEEE----ECCcCCCCCCcEEEeCcHHHHHHHHHH--
Confidence 2356667788899999999986654332 23344455 45663 445443322 2455543 33333333
Q ss_pred HHHHhhhhcCCceEEEE
Q 009444 298 AAHVEVESVENGVGIVK 314 (534)
Q Consensus 298 ~i~~~A~S~~~rv~iVE 314 (534)
+.. ..+ ++|.++-
T Consensus 122 -L~~--~G~-~~I~~i~ 134 (288)
T 3gv0_A 122 -LAQ--CGR-KRIAVIV 134 (288)
T ss_dssp -HHH--TTC-CEEEEEC
T ss_pred -HHH--CCC-CeEEEEc
Confidence 222 243 5677763
No 112
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=27.03 E-value=92 Score=29.68 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=58.6
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEccccccccc---------CCcccCCHHHHhhHhhcCCcceeecC
Q 009444 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSR 217 (534)
Q Consensus 147 iaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---------~~~~~L~~~~V~~i~~~GGs~LGTsR 217 (534)
-+++.+||+.|-... .... ...-++|+-.|..=|++ |++-.++.+..+.+...|=.++--..
T Consensus 3 ~~~I~~gG~~~~~~~-------~~~~--~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~~ 73 (222)
T 3mel_A 3 RVLLVAGGNPSDWPT-------IEPA--TYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTETLIQAPA 73 (222)
T ss_dssp EEEEECSSCGGGCCC-------CCGG--GCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSSEEECCS
T ss_pred EEEEEECCCCccchh-------HHhh--cCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCcEEECCc
Confidence 356667888763221 0111 12368899999887765 34445666666667666533332122
Q ss_pred C--CchHHHHHHHHHHhCCc-EEEEEcCCcc
Q 009444 218 G--GHDTNKIVDNIEDRGIN-QVYIIGGDGT 245 (534)
Q Consensus 218 ~--~~d~~~iv~~l~~~~Id-~LvvIGGdgS 245 (534)
. .-|++++++.+.+++-+ -++++||.|.
T Consensus 74 eKD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 74 EKDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp SCSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred cCCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 2 24789999999999987 9999999996
No 113
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=26.97 E-value=3.6e+02 Score=26.31 Aligned_cols=106 Identities=9% Similarity=-0.021 Sum_probs=60.4
Q ss_pred chhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCc-ccCCHHHHhhHhhcCCcceeecCC---CchHHHHHHH--HH
Q 009444 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDN--IE 230 (534)
Q Consensus 157 PGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~--l~ 230 (534)
|--+...+.+++.+...++..+|.-+.. - +..+ ..+.....+.+...|+++...... ..++...+.. ++
T Consensus 122 ~~~~~~~~~~~~~l~~~~g~~~iaii~~-~----~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~ 196 (391)
T 3eaf_A 122 PDYSTQACSGLAFLASEFGQGKLALAYD-S----KVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREML 196 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEEEEEC-T----TCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEEe-c----CChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHH
Confidence 3445556666666654335444444432 1 0111 111122233445667776654432 3578888888 99
Q ss_pred HhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecc
Q 009444 231 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (534)
Q Consensus 231 ~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPk 270 (534)
+.+.|++|+.+- +. .+..+.+.+++.|+++++++...
T Consensus 197 ~~~~dav~~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~~ 233 (391)
T 3eaf_A 197 AADPDYVWCGNT-IS--SCSLLGRAMAKVGLDAFLLTNVW 233 (391)
T ss_dssp TTCCSEEEECSC-HH--HHHHHHHHHHHHTCCCEEEECGG
T ss_pred HcCCCEEEEecC-cH--HHHHHHHHHHHCCCCceEEEecc
Confidence 999999877553 22 34455666777899988887543
No 114
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=26.95 E-value=94 Score=29.00 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=35.7
Q ss_pred ceeecCCCchHHHHHHHHHHhCCcEEEEEcCCc-chHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdg-S~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
+.+--|+.+.+.+++++.++.+++.+|.+.|-. .+-+.. +- ....||||||-.
T Consensus 46 V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 46 VVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGML--AA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp ECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHH--HH-----TCSSCEEEEEEC
T ss_pred EEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----ccCCCEEEeeCC
Confidence 344457777888888888889999777665544 344332 21 346899999964
No 115
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=26.92 E-value=3.4e+02 Score=25.20 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=51.4
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-chHH
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~ 223 (534)
.+||++...-..|-...++.++.+.+.. ++..++. +-.+... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 4799998776677777888888777653 2210221 1111111 2234
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
..++.+...++|++++.+.+.+.. ....+.+.+.+ ++||.+
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 90 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQN--VPVVFF 90 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTT--CCEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCC--CcEEEe
Confidence 667788889999999988776531 12223444444 566655
No 116
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=26.58 E-value=2.5e+02 Score=30.22 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhCCcEEEEE--------cCCc--chHHHHHHHHHHHHcCCceeEe--------------eec--c----
Q 009444 221 DTNKIVDNIEDRGINQVYII--------GGDG--TQKGAALIYKEVEKRGLQVAVA--------------GIP--K---- 270 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvI--------GGdg--S~~~A~~L~e~~~~~g~~i~vv--------------gIP--k---- 270 (534)
.++.-++.||..|++++.+= -|.+ -..+=.+|++.+++.|+++++| .|| .
T Consensus 35 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~ 114 (498)
T 1fa2_A 35 KVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQ 114 (498)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCCTTCCCCBCSCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHH
Confidence 45666888999999998762 2333 3556678888889999998877 344 2
Q ss_pred --ccccCccccCC---------CCChh--------hHHHHHHHHHHHHHHhhhhcC--CceEEEEecC
Q 009444 271 --TIDNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE--NGVGIVKLMG 317 (534)
Q Consensus 271 --TIDNDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~~--~rv~iVEvMG 317 (534)
-=|.||..||. |+|.| |+++.+.+.+.+.+++-.+-- .-|.=|++=.
T Consensus 115 ~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGl 182 (498)
T 1fa2_A 115 IGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGC 182 (498)
T ss_dssp HTTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHHHHHSHHHHHHTCEEEEEECC
T ss_pred hhccCCCceEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCc
Confidence 33458999984 88998 889999999999888766542 2244454433
No 117
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=26.19 E-value=4.3e+02 Score=25.09 Aligned_cols=126 Identities=15% Similarity=0.194 Sum_probs=64.2
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCC-Cch
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~-~~d 221 (534)
+..+||+++.. ..|=...++.++.+.+.. +.+.++. +-.+.. ...
T Consensus 5 ~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~-~~g~~l~--------------------------------i~~~~~~~~~ 50 (325)
T 2x7x_A 5 PHFRIGVAQCS-DDSWRHKMNDEILREAMF-YNGVSVE--------------------------------IRSAGDDNSK 50 (325)
T ss_dssp -CCEEEEEESC-CSHHHHHHHHHHHHHHTT-SSSCEEE--------------------------------EEECTTCHHH
T ss_pred CCeEEEEEecC-CCHHHHHHHHHHHHHHHH-cCCcEEE--------------------------------EeCCCCCHHH
Confidence 34589999866 555556667777666532 2122221 111111 122
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc--CCCCChhh--HHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRAIN 297 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt--D~S~GFdT--Av~~~~~ai~ 297 (534)
....++.+...++|++++.+.+... .....+.+.+.+ ++||.+ |++++.. ..++++|- +...++ +
T Consensus 51 ~~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~---~ 119 (325)
T 2x7x_A 51 QAEDVHYFMDEGVDLLIISANEAAP--MTPIVEEAYQKG--IPVILV----DRKILSDKYTAYIGADNYEIGRSVG---N 119 (325)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSHHH--HHHHHHHHHHTT--CCEEEE----SSCCSSSCSSEEEEECHHHHHHHHH---H
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEe----CCCCCCcceeEEEecCHHHHHHHHH---H
Confidence 3466778888999999998866432 112234444445 556655 3433321 22455543 233333 3
Q ss_pred HHHHhhhhcCCceEEEE
Q 009444 298 AAHVEVESVENGVGIVK 314 (534)
Q Consensus 298 ~i~~~A~S~~~rv~iVE 314 (534)
.+.....++ ++|.++-
T Consensus 120 ~L~~~~~G~-~~I~~i~ 135 (325)
T 2x7x_A 120 YIASSLKGK-GNIVELT 135 (325)
T ss_dssp HHHHHTTTE-EEEEEEE
T ss_pred HHHHHcCCC-ceEEEEE
Confidence 333222344 5677774
No 118
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=26.18 E-value=2.5e+02 Score=27.51 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=45.2
Q ss_pred ccCCHHHHhhHhhcCCcceeecCCC-chHHHHHHHHHHhCCcEEEEEc----CCcchHHHHHHHHHHH
Q 009444 195 LTLSPKVVNDIHKRGGTILRTSRGG-HDTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVE 257 (534)
Q Consensus 195 ~~L~~~~V~~i~~~GGs~LGTsR~~-~d~~~iv~~l~~~~Id~LvvIG----GdgS~~~A~~L~e~~~ 257 (534)
++++++++-.....++ .--||.-. .++.++.+.+.+.+ +.+++|. =.||+.+|...++.+.
T Consensus 43 ~di~~~efy~~~~~~~-~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~ 108 (289)
T 1pzx_A 43 ITIEPKQVYDAMRQGH-TVKTAQPSPLAMKELFLPYAKEN-RPCLYIAFSSKLSGTYQTAMAVRSELL 108 (289)
T ss_dssp TTBCHHHHHHHHTTTC-CCEEECCCHHHHHHHHHHHHHTT-CCEEEEECCTTTCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCC-CCeeCCCCHHHHHHHHHHHHhCC-CeEEEEECCCchhHHHHHHHHHHHhhH
Confidence 5799998888888877 66777753 56788888887777 5677764 4778888887776643
No 119
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=26.04 E-value=2.8e+02 Score=26.48 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=52.7
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-ch
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HD 221 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d 221 (534)
+..+||++...-.-|-...++.++.+.+.. ++. ++. +-.+... ..
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~ 49 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGL-PYV--------------------------------PLTTEGSSEK 49 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-CEE--------------------------------EEECTTCHHH
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EecCCCCHHH
Confidence 345899999776677777788888777653 221 111 1111111 22
Q ss_pred HHHHHHHHHHhC--CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 222 TNKIVDNIEDRG--INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 222 ~~~iv~~l~~~~--Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
....++.|...+ +|++++.+.+... ...+.+.+.+.+ ++||.+-..
T Consensus 50 ~~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~ 97 (332)
T 2rjo_A 50 GIADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKAG--AYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHHT--CEEEEESCC
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEECCC
Confidence 345677777888 9999998876532 112233444445 567765433
No 120
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=25.53 E-value=55 Score=27.37 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCceeEeeeccccccCc
Q 009444 248 GAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (534)
Q Consensus 248 ~A~~L~e~~~~~g~~i~vvgIPkTIDNDI 276 (534)
....|.+.+++++...-|||+|++.|+..
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~ 67 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKE 67 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSS
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCc
Confidence 44566666677777778999999998765
No 121
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=25.52 E-value=84 Score=29.32 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=36.8
Q ss_pred ceeecCCCchHHHHHHHHHHhCCcEEEEEcCCc-chHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdg-S~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
+.+--|+.+.+.+++++.++.+++.+|.+.|-. .+-+.. +- ....||||||-..
T Consensus 41 V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~ 95 (174)
T 3lp6_A 41 VVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMV--AA-----ATPLPVIGVPVPL 95 (174)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECC
T ss_pred EECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHH--Hh-----ccCCCEEEeeCCC
Confidence 344457778889999999999999777765544 444432 21 1357899999643
No 122
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=25.48 E-value=57 Score=30.64 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=8.1
Q ss_pred CceeEeeecc
Q 009444 261 LQVAVAGIPK 270 (534)
Q Consensus 261 ~~i~vvgIPk 270 (534)
..+||||||-
T Consensus 99 T~~PVIGVPv 108 (181)
T 4b4k_A 99 TNLPVIGVPV 108 (181)
T ss_dssp CCSCEEEEEC
T ss_pred CCCCEEEEec
Confidence 4678999996
No 123
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.32 E-value=4e+02 Score=24.44 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=72.4
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCch
Q 009444 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (534)
Q Consensus 142 ~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d 221 (534)
.+..+||++...-.-|-...++.++-+.+.+ ++ .++.-+. +......
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~ 51 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES-RG-YIGVLFD-------------------------------ANADIER 51 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TT-CEEEEEE-------------------------------CTTCHHH
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHH
Confidence 3456899999877777888888888777753 33 2332110 1111123
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc-CCCCChh--hHHHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFD--TAVEEAQRAINA 298 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFd--TAv~~~~~ai~~ 298 (534)
..+.++.+...++|++++.+.+. ....+.+.+.+ ++||.+ |++++.. -.++++| .+...+++.+
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~-----~~~~~~l~~~~--iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~~L-- 118 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN-----PQTVQEILHQQ--MPVVSV----DREMDACPWPQVVTDNFEAAKAATTAF-- 118 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC-----HHHHHHHHTTS--SCEEEE----SCCCTTCSSCEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCEEEEecCCc-----HHHHHHHHHCC--CCEEEE----ecccCCCCCCEEEEChHHHHHHHHHHH--
Confidence 45778888899999999999887 22334444445 556654 4444332 2244544 2333333333
Q ss_pred HHHhhhhcCCceEEEEecC
Q 009444 299 AHVEVESVENGVGIVKLMG 317 (534)
Q Consensus 299 i~~~A~S~~~rv~iVEvMG 317 (534)
.. ..+ ++|.++--..
T Consensus 119 -~~--~G~-~~I~~i~~~~ 133 (276)
T 3jy6_A 119 -RQ--QGY-QHVVVLTSEL 133 (276)
T ss_dssp -HT--TTC-CEEEEEEECS
T ss_pred -HH--cCC-CeEEEEecCC
Confidence 22 344 5677776544
No 124
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=24.56 E-value=25 Score=31.47 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccc
Q 009444 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~g 278 (534)
+.+++++.+++.+.+-++||||-.-++.+..+.+ .+.+--+|..++.|..+
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~F 131 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYY 131 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEEC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEEC
Confidence 6788889998888889999999877777665432 36678889988777643
No 125
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=24.08 E-value=3.7e+02 Score=24.69 Aligned_cols=70 Identities=6% Similarity=-0.031 Sum_probs=43.6
Q ss_pred CCeeEEEEccCCC--CchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeec-CCC
Q 009444 143 DEVRACIVTCGGL--CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-RGG 219 (534)
Q Consensus 143 ~~~riaIvtsGG~--aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTs-R~~ 219 (534)
+..+||++...-. .|-...+++++.+.+.. .+ .++.- ..+. ...
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~ 50 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YE-IKLEF-------------------------------MAPEKEED 50 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------CCCSSTTC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ecCCCCCC
Confidence 3458999987655 67777888888777653 22 22210 0000 111
Q ss_pred -chHHHHHHHHHHhCCcEEEEEcCCcc
Q 009444 220 -HDTNKIVDNIEDRGINQVYIIGGDGT 245 (534)
Q Consensus 220 -~d~~~iv~~l~~~~Id~LvvIGGdgS 245 (534)
....+.++.|...++|++++.+.+..
T Consensus 51 ~~~~~~~~~~l~~~~vdgii~~~~~~~ 77 (289)
T 3brs_A 51 YLVQNELIEEAIKRKPDVILLAAADYE 77 (289)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCSCTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 22346778888899999999987654
No 126
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=23.60 E-value=3e+02 Score=29.67 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhCCcEEEEE--------cCCc--chHHHHHHHHHHHHcCCceeEe--------------eec--c----
Q 009444 221 DTNKIVDNIEDRGINQVYII--------GGDG--TQKGAALIYKEVEKRGLQVAVA--------------GIP--K---- 270 (534)
Q Consensus 221 d~~~iv~~l~~~~Id~LvvI--------GGdg--S~~~A~~L~e~~~~~g~~i~vv--------------gIP--k---- 270 (534)
.++.-++.||..|++++.+= -|.+ -..+=.+|++.+++.|+++++| .|| .
T Consensus 34 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~ 113 (495)
T 1wdp_A 34 GLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLD 113 (495)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCSTTCSCCBCSCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHH
Confidence 35666888999999998762 2333 3556678888888999998877 344 3
Q ss_pred --ccccCccccCC---------CCChh--------hHHHHHHHHHHHHHHhhhhcC--CceEEEEecC
Q 009444 271 --TIDNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE--NGVGIVKLMG 317 (534)
Q Consensus 271 --TIDNDI~gtD~---------S~GFd--------TAv~~~~~ai~~i~~~A~S~~--~rv~iVEvMG 317 (534)
-=|.||..||. |+|.| |+++.+.+.+.+.+++-.+-- .-|.=|++=.
T Consensus 114 ~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGl 181 (495)
T 1wdp_A 114 IGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181 (495)
T ss_dssp HHHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHHHHTTCEEEEEECC
T ss_pred hhccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCc
Confidence 23458999984 88888 889999999999888766542 2344454433
No 127
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=23.05 E-value=62 Score=33.29 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHhC--C---cEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 220 HDTNKIVDNIEDRG--I---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 220 ~d~~~iv~~l~~~~--I---d~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
+..+++++.+.+.+ + |.++-+||--.+..|..++-.. .++ +++|.||-|.
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 45789999999999 9 9999999977777766665322 345 6799999875
No 128
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=22.91 E-value=94 Score=28.86 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=36.4
Q ss_pred ceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS-~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
+.+--|+++.+.+++++.++.+++.+|.+.|-.. +-+. ++- ....||||||-.
T Consensus 40 V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 40 ILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT--IAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp ECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH--HHH-----TCSSCEEEEECC
T ss_pred EEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--HHh-----cCCCCEEEeecC
Confidence 3444577778889999999999997777655444 3332 221 346899999954
No 129
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=22.85 E-value=2.4e+02 Score=25.86 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHh-C----CcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc--CCCCChhh-HHH
Q 009444 219 GHDTNKIVDNIEDR-G----INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT-AVE 290 (534)
Q Consensus 219 ~~d~~~iv~~l~~~-~----Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt--D~S~GFdT-Av~ 290 (534)
..|+..+.+.|.++ . =|-++|=||-|=+..|....++ .|+.++|+|+-|- ...+... ...+--++ |+.
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK~-~e~l~~~~~~i~L~~~s~~l~ 135 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLR 135 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC-----CEEETTEEECCCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEcC-CcEEEeCCCeeecCCCCHHHH
Confidence 36777777777665 2 4666677899988888877664 4888999999993 1223211 12333333 667
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 009444 291 EAQRAINAAHVEVESVEN 308 (534)
Q Consensus 291 ~~~~ai~~i~~~A~S~~~ 308 (534)
.+++.=|.+|.-|-+.++
T Consensus 136 llqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 136 LLVQIRDETHRFAVSYHR 153 (159)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777888888877554
No 130
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=22.85 E-value=1.6e+02 Score=29.08 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=56.0
Q ss_pred cccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcc---cCCHHHHhhHhhcCCcc
Q 009444 136 EKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTL---TLSPKVVNDIHKRGGTI 212 (534)
Q Consensus 136 ~~~~f~~~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~---~L~~~~V~~i~~~GGs~ 212 (534)
..+||.+....|||.=|| - |.-.|.+.+.+.+ +..+++-+-+ .... +-+|+.+..
T Consensus 16 ~~~~~~~~~~~IgvfDSG--v-GGLtv~~~i~~~l----P~e~~iy~~D-------~a~~PYG~ks~e~i~~-------- 73 (274)
T 3uhf_A 16 ENLYFQSNAMKIGVFDSG--V-GGLSVLKSLYEAR----LFDEIIYYGD-------TARVPYGVKDKDTIIK-------- 73 (274)
T ss_dssp -CCCCCCSCCEEEEEESS--S-TTHHHHHHHHHTT----CCSEEEEEEC-------TTTCCCTTSCHHHHHH--------
T ss_pred ceeeccCCCCeEEEEECC--C-ChHHHHHHHHHHC----CCCCEEEEec-------CCCCCCCCCCHHHHHH--------
Confidence 467888888999999986 2 3344777776543 5455543322 1111 223333322
Q ss_pred eeecCCCchHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee
Q 009444 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (534)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI 268 (534)
-..++++.|++.|+++++|-.---+..+. +++++ .+++||+||
T Consensus 74 --------~~~~~~~~L~~~g~d~IVIACNTa~~~al----~~lr~-~~~iPvigi 116 (274)
T 3uhf_A 74 --------FCLEALDFFEQFQIDMLIIACNTASAYAL----DALRA-KAHFPVYGV 116 (274)
T ss_dssp --------HHHHHHHHHTTSCCSEEEECCHHHHHHSH----HHHHH-HCSSCEECS
T ss_pred --------HHHHHHHHHHHCCCCEEEEeCCChhHHHH----HHHHH-hcCCCEEcC
Confidence 24567789999999987775422111112 33332 246889986
No 131
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=22.79 E-value=78 Score=29.34 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=35.7
Q ss_pred eeecCCCchHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCceeEeeecccc
Q 009444 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTI 272 (534)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS-~~~A~~L~e~~~~~g~~i~vvgIPkTI 272 (534)
.+--|+++.+.+.++++++.+++.+|.+-|-.. +-+.. +- ....||||||-..
T Consensus 40 ~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~ 93 (166)
T 3oow_A 40 VSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMV--AA-----KTTLPVLGVPVKS 93 (166)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECCC
T ss_pred EcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHH--Hh-----ccCCCEEEeecCc
Confidence 444577777888888888889988877755444 44332 21 3468999999643
No 132
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=22.73 E-value=6.2e+02 Score=25.73 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=75.6
Q ss_pred HhhHhhc-CCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCcc---hHHHHHHHHHHHHcCCceeEeeeccccc---c
Q 009444 202 VNDIHKR-GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGIPKTID---N 274 (534)
Q Consensus 202 V~~i~~~-GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdgS---~~~A~~L~e~~~~~g~~i~vvgIPkTID---N 274 (534)
+...... |-+++++..-+.++.-.....++.....+++.|=|-+ +..+..|.++++++|++...++-.-|.. .
T Consensus 136 l~~~A~~~Gv~i~dvr~~p~~l~v~~g~i~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~ 215 (350)
T 2g0t_A 136 FLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGA 215 (350)
T ss_dssp HHHHHHHHTCCEEESSSCCSSCCCCCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTC
T ss_pred HHHHHHHCCCEEEEeCcCCCcccccccceeeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeecc
Confidence 4444444 5678888544322221112233446667998887654 6678888899999999887776555532 3
Q ss_pred CccccCCCCChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCC--cchHHHHHhhhcC-CCcEEec
Q 009444 275 DIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRY--SGFISMYATLASR-DVDCCLI 339 (534)
Q Consensus 275 DI~gtD~S~GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~--sG~LAl~aaLAs~-~ad~ilI 339 (534)
|....--.+-++-+.-.....+-.+. ..+..|.+||-+|.- ..+.....+|..+ .+|.+++
T Consensus 216 ~~gv~~D~~~~~~~ag~~e~~i~~~~----~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 216 DAGYVIDAVPADFVSGVVEKAVLKLE----KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp SEECCGGGSBGGGHHHHHHHHHHHHH----HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCCceecchhhHHHHhhHHHhh----hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 33222123444443333333333332 223469999999853 4555434444332 6888888
No 133
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=22.70 E-value=33 Score=30.74 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHH--HHHHHHHcCCceeEeeecccccc
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL--IYKEVEKRGLQVAVAGIPKTIDN 274 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~--L~e~~~~~g~~i~vvgIPkTIDN 274 (534)
.+++++++.|++.+++-++|+||-.-+..+.. |.+ .+.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 36889999999999999999999876665544 322 3667788887753
No 134
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.41 E-value=4.6e+02 Score=24.16 Aligned_cols=121 Identities=10% Similarity=0.038 Sum_probs=65.6
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-chH
Q 009444 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (534)
Q Consensus 144 ~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (534)
..+||++...-..|-...+++++.+.+.. ++ .++. +-.+... ...
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 53 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEK-NG-YRIL--------------------------------LCNTESDLARS 53 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 45899999766667777788887776653 22 2222 1111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc-CCCCChhh--HHHHHHHHHHHH
Q 009444 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDT--AVEEAQRAINAA 299 (534)
Q Consensus 223 ~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFdT--Av~~~~~ai~~i 299 (534)
...++.+...++|++++.+.+.+-. ..+.+. .+ +++|.+ |.+.+.. -.++++|- +...+++. +
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~-~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~---L 119 (285)
T 3c3k_A 54 RSCLTLLSGKMVDGVITMDALSELP----ELQNII-GA--FPWVQC----AEYDPLSTVSSVSIDDVAASEYVVDQ---L 119 (285)
T ss_dssp HHHTHHHHTTCCSEEEECCCGGGHH----HHHHHH-TT--SSEEEE----SSCCTTSSSCEEECCHHHHHHHHHHH---H
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHh-cC--CCEEEE----ccccCCCCCCEEEEChHHHHHHHHHH---H
Confidence 4567788889999999998765421 223343 44 566655 3333221 12455543 33333333 3
Q ss_pred HHhhhhcCCceEEEEe
Q 009444 300 HVEVESVENGVGIVKL 315 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEv 315 (534)
.. .++ ++|.++--
T Consensus 120 ~~--~G~-~~I~~i~~ 132 (285)
T 3c3k_A 120 VK--SGK-KRIALINH 132 (285)
T ss_dssp HH--TTC-CCEEEEEC
T ss_pred HH--cCC-CeEEEEeC
Confidence 22 244 56887754
No 135
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=22.33 E-value=3.5e+02 Score=26.69 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=80.8
Q ss_pred eeEEEEc-cCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCCchHH
Q 009444 145 VRACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (534)
Q Consensus 145 ~riaIvt-sGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (534)
+|++||| |+.+-| ...+ +.++. .++-++-=+.|=.-.+-++++.+++-.....++.+.-||-- ...
T Consensus 20 Mki~IvtDSt~dL~------~e~~----~~~~I-~vvPL~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSqp--s~~ 86 (298)
T 3jr7_A 20 MSYKVIVDSCGEFT------PEMK----ADGGF-EHVALGIQIEDTQWTDDDSLKQEELLLKIAESTSCAKTSCP--SPE 86 (298)
T ss_dssp CCEEEEEETTSCCC------HHHH----HHSSE-EEECCEEEETTEEEECSTTSCHHHHHHHHHHCSSCCEEECC--CHH
T ss_pred CCEEEEEECCCCCC------HHHH----HhCCe-EEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCCC--CHH
Confidence 5899999 666666 1222 23443 33322211222111123679999888888887777777764 334
Q ss_pred HHHHHHHHhCCcEEEEEc----CCcchHHHHHHHHHHHH-c-CCceeEeeeccccccCccccCCCCChhhHHHHHHHHHH
Q 009444 224 KIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVEK-R-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (534)
Q Consensus 224 ~iv~~l~~~~Id~LvvIG----GdgS~~~A~~L~e~~~~-~-g~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ai~ 297 (534)
...+.+++ +-+.+++|. =.||+.+|...++.+.+ + +.+|.|| |.- -.|.|..=.+..+++.++
T Consensus 87 ~~~~~f~~-~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi------DS~----~~s~g~g~lv~~Aa~l~~ 155 (298)
T 3jr7_A 87 RYMESYHC-DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVF------NSR----SASVGETLIALKVQQCEK 155 (298)
T ss_dssp HHHHHHCS-SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEE------ECS----SCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcchhHHHHHHHHHHHHHHhhCCCCeEEEE------CCC----chhHHHHHHHHHHHHHHH
Confidence 45555554 567787773 57888888877766543 2 3444443 111 125555555555555443
Q ss_pred ----------HHHHhhhhcCCceEEEEec
Q 009444 298 ----------AAHVEVESVENGVGIVKLM 316 (534)
Q Consensus 298 ----------~i~~~A~S~~~rv~iVEvM 316 (534)
.+..-... -+-+|+|+..
T Consensus 156 ~G~s~eeI~~~l~~~~~~-~~~~f~v~~L 183 (298)
T 3jr7_A 156 AGMTFEEVVESVECYIEE-QHTYFVLENL 183 (298)
T ss_dssp TTCCHHHHHHHHHHHHHH-CCEEEECSCC
T ss_pred cCCCHHHHHHHHHHHHhh-CeEEEEeCCh
Confidence 22222222 2457888875
No 136
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=22.16 E-value=2.1e+02 Score=26.62 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=33.2
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhcCCceEEEEecCCCc-chHHHHHhh
Q 009444 284 GFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS-GFISMYATL 329 (534)
Q Consensus 284 GFdTAv~~~~~ai~~i~~~A~S~~~rv~iVEvMGR~s-G~LAl~aaL 329 (534)
-|.++++-+.++++.+...+.. .++++ +||.++ |+||+..++
T Consensus 73 ~~p~~~~D~~~al~~l~~~~~~-~~~i~---l~G~SaGG~lA~~~a~ 115 (274)
T 2qru_A 73 KIDHILRTLTETFQLLNEEIIQ-NQSFG---LCGRSAGGYLMLQLTK 115 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-TCCEE---EEEETHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccc-CCcEE---EEEECHHHHHHHHHHH
Confidence 7899999999999998877653 34555 578888 689988887
No 137
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.08 E-value=4.7e+02 Score=24.14 Aligned_cols=123 Identities=7% Similarity=-0.034 Sum_probs=66.2
Q ss_pred CeeEEEEccC-C---CCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC
Q 009444 144 EVRACIVTCG-G---LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (534)
Q Consensus 144 ~~riaIvtsG-G---~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~ 219 (534)
..+||++... - ..|-...++.++-+.+.. ++ .++.-+ + +....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-~------------------------------~~~~~ 50 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VN-YFVLPF-P------------------------------FSEDR 50 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TT-CEEEEC-C------------------------------CCSST
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH-cC-CEEEEE-e------------------------------CCCch
Confidence 3488998865 4 667777888888777753 22 232210 0 00011
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCcccc-CCCCChh--hHHHHHHHHH
Q 009444 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFD--TAVEEAQRAI 296 (534)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gt-D~S~GFd--TAv~~~~~ai 296 (534)
....+.++.+...++|++++.+.+.+-. ..+.+.+.+ ++||.+ |.+.+.. -.++++| .+...+++.+
T Consensus 51 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L 120 (287)
T 3bbl_A 51 SQIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQK--FPFVAF----GRSNPDWDFAWVDIDGTAGTRQAVEYL 120 (287)
T ss_dssp TCCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTT--CCEEEE----SCCSTTCCCCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcC--CCEEEE----CCcCCCCCCCEEEeccHHHHHHHHHHH
Confidence 2234667788889999999998765432 223344445 556655 3333221 1245544 2333333333
Q ss_pred HHHHHhhhhcCCceEEEEe
Q 009444 297 NAAHVEVESVENGVGIVKL 315 (534)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEv 315 (534)
.. .++ ++|.++--
T Consensus 121 ---~~--~G~-~~I~~i~~ 133 (287)
T 3bbl_A 121 ---IG--RGH-RRIAILAW 133 (287)
T ss_dssp ---HH--HTC-CCEEEEEC
T ss_pred ---HH--CCC-CeEEEEeC
Confidence 22 244 56887753
No 138
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.03 E-value=4.8e+02 Score=24.18 Aligned_cols=124 Identities=13% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHHHhhHhhcCCcceeecCCC-ch
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HD 221 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~V~~i~~~GGs~LGTsR~~-~d 221 (534)
+..+|||+...-.-|-...++.++.+.+.+ ++ .++. +-.+... ..
T Consensus 15 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~ 60 (289)
T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATM-YK-YNII--------------------------------LSNSDQNMEK 60 (289)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHH
Confidence 345899999766667777788888777653 22 2222 1111111 22
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeeeccccccCccccCCCCChh--hHHHHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD--TAVEEAQRAINAA 299 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgIPkTIDNDI~gtD~S~GFd--TAv~~~~~ai~~i 299 (534)
..+.++.|...++|++++.+.+.+... .+.+.+.+ ++||.+-..++++ . -.++++| .+...+++.+
T Consensus 61 ~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~~~L--- 128 (289)
T 2fep_A 61 ELHLLNTMLGKQVDGIVFMGGNITDEH----VAEFKRSP--VPIVLAASVEEQE--E-TPSVAIDYEQAIYDAVKLL--- 128 (289)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHHSS--SCEEEESCCCTTC--C-SCEEECCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCHHH----HHHHHhcC--CCEEEEccccCCC--C-CCEEEECcHHHHHHHHHHH---
Confidence 346778888899999999987654222 23344445 5566553322221 1 1245544 3333333333
Q ss_pred HHhhhhcCCceEEEEe
Q 009444 300 HVEVESVENGVGIVKL 315 (534)
Q Consensus 300 ~~~A~S~~~rv~iVEv 315 (534)
.. .++ ++|.++--
T Consensus 129 ~~--~G~-~~I~~i~~ 141 (289)
T 2fep_A 129 VD--KGH-TDIAFVSG 141 (289)
T ss_dssp HH--TTC-SSEEEEES
T ss_pred HH--CCC-CeEEEEeC
Confidence 22 244 56887753
No 139
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=21.61 E-value=3.2e+02 Score=29.89 Aligned_cols=103 Identities=18% Similarity=0.101 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCceeEeee-ccccccCccccCCCCChhhHHHHHHHHHHHHH
Q 009444 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (534)
Q Consensus 222 ~~~iv~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~ai~~i~ 300 (534)
.-..++.+++.--+.-++.|.--|..+|..|.+. |.+.--||| |.+|.--=..+-.-...-||+-.++++...
T Consensus 309 v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~a----GAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~-- 382 (556)
T 4af0_A 309 QIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAA----GADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASR-- 382 (556)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH----TCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGG--
T ss_pred HHHHHHHHHhhCCcceEEeccccCHHHHHHHHHc----CCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHH--
Confidence 3444555555544445555556667777766553 666655666 554332111111223456677665554321
Q ss_pred HhhhhcCCceEEEEecC-CCcchHHHHHhhhcCCCcEEecC
Q 009444 301 VEVESVENGVGIVKLMG-RYSGFISMYATLASRDVDCCLIP 340 (534)
Q Consensus 301 ~~A~S~~~rv~iVEvMG-R~sG~LAl~aaLAs~~ad~ilIP 340 (534)
.++.||===| |++|.||.. ||. |||.|.+-
T Consensus 383 -------~~vpvIADGGI~~sGDi~KA--laa-GAd~VMlG 413 (556)
T 4af0_A 383 -------FGIPCIADGGIGNIGHIAKA--LAL-GASAVMMG 413 (556)
T ss_dssp -------GTCCEEEESCCCSHHHHHHH--HHT-TCSEEEES
T ss_pred -------cCCCEEecCCcCcchHHHHH--hhc-CCCEEEEc
Confidence 2355554333 688999865 455 79998875
No 140
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=21.03 E-value=4.3e+02 Score=24.95 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=27.0
Q ss_pred cCCHHHHhhHhhcCCcceeecCCCchHHHHHHHHHHhCCcEEEEEcCCc
Q 009444 196 TLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG 244 (534)
Q Consensus 196 ~L~~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LvvIGGdg 244 (534)
-+....++.+...||..+=-.- ..+.+ +.+.|+ ++|+|++-||.+
T Consensus 28 ~~~~~~~~~l~~aG~~pv~lp~-~~~~~-~~~~l~--~~DGlil~GG~~ 72 (254)
T 3fij_A 28 YTQQRYVDAIQKVGGFPIALPI-DDPST-AVQAIS--LVDGLLLTGGQD 72 (254)
T ss_dssp --CHHHHHHHHHHTCEEEEECC-CCGGG-HHHHHH--TCSEEEECCCSC
T ss_pred hhhHHHHHHHHHCCCEEEEEeC-CCchH-HHHHHh--hCCEEEECCCCC
Confidence 3566778888888886432221 12222 334444 599999999955
No 141
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=20.68 E-value=1.7e+02 Score=30.08 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEccccccc
Q 009444 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF 189 (534)
Q Consensus 143 ~~~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL 189 (534)
+.+||.|+-+||- -+ +++..+.+..++.+||.. .|-.|.
T Consensus 2 ~~mkvlviG~ggr---e~----ala~~l~~s~~v~~v~~~-pgn~g~ 40 (431)
T 3mjf_A 2 NAMNILIIGNGGR---EH----ALGWKAAQSPLADKIYVA-PGNAGT 40 (431)
T ss_dssp -CEEEEEEECSHH---HH----HHHHHHTTCTTEEEEEEE-ECCHHH
T ss_pred CCcEEEEECCCHH---HH----HHHHHHHhCCCCCEEEEE-CCCHHH
Confidence 3579999988852 22 344444444444577776 344444
No 142
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.65 E-value=4e+02 Score=22.83 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=44.3
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCcccCCHHH-HhhHhhcCCcceeecCCC----
Q 009444 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV-VNDIHKRGGTILRTSRGG---- 219 (534)
Q Consensus 145 ~riaIvtsGG~aPGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~-V~~i~~~GGs~LGTsR~~---- 219 (534)
.||.+.+.||+.=-+-.-+ +..+....+ .+|+- .| ...+.+. ++.....+-.++|.|-..
T Consensus 4 ~~vvla~~~~d~HdiG~~~---v~~~l~~~G-~~Vi~-----lG------~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~ 68 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKI---LDHAFTNAG-FNVVN-----IG------VLSPQELFIKAAIETKADAILVSSLYGQGE 68 (137)
T ss_dssp CEEEEEEETTCCCCHHHHH---HHHHHHHTT-CEEEE-----EE------EEECHHHHHHHHHHHTCSEEEEEECSSTHH
T ss_pred CEEEEEeCCCchhHHHHHH---HHHHHHHCC-CEEEE-----CC------CCCCHHHHHHHHHhcCCCEEEEEecCcCcH
Confidence 4778888888753222222 222222233 34441 11 1234443 344444555666655431
Q ss_pred chHHHHHHHHHHhCC-cEEEEEcCCc
Q 009444 220 HDTNKIVDNIEDRGI-NQVYIIGGDG 244 (534)
Q Consensus 220 ~d~~~iv~~l~~~~I-d~LvvIGGdg 244 (534)
....++++.|++.+. +..+++||..
T Consensus 69 ~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 69 IDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp HHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 245677777887777 5777888854
No 143
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=20.51 E-value=2.9e+02 Score=29.45 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=12.4
Q ss_pred cEEEE-EcCCcchHHHHHHHH
Q 009444 235 NQVYI-IGGDGTQKGAALIYK 254 (534)
Q Consensus 235 d~Lvv-IGGdgS~~~A~~L~e 254 (534)
|++|+ =||.||+.-...+..
T Consensus 249 DAfIaLPGG~GTLEELfE~LT 269 (462)
T 3gh1_A 249 HGIIIFPGGPGTAEELLYILG 269 (462)
T ss_dssp SEEEECSCSHHHHHHHHHHHH
T ss_pred CEEEEcCCCcchHHHHHHHHH
Confidence 55554 588898876554433
No 144
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=20.02 E-value=86 Score=29.14 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=28.7
Q ss_pred eecCCCchHHHHHHHHHHhCCcEEEEEcC-CcchHHHHHHHHHHHHcCCceeEeeeccc
Q 009444 214 RTSRGGHDTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (534)
Q Consensus 214 GTsR~~~d~~~iv~~l~~~~Id~LvvIGG-dgS~~~A~~L~e~~~~~g~~i~vvgIPkT 271 (534)
+--|+.+.+.+++++.++.+++.+|.+-| .+.+-+.. +- ....||||||-.
T Consensus 47 SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 98 (170)
T 1xmp_A 47 SAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMV--AA-----KTNLPVIGVPVQ 98 (170)
T ss_dssp CTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HT-----TCCSCEEEEEEC
T ss_pred eccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCC
Confidence 33455556666666666667775554433 33333322 11 246789999965
Done!