RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009444
(534 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 569 bits (1469), Expect = 0.0
Identities = 176/486 (36%), Positives = 263/486 (54%), Gaps = 29/486 (5%)
Query: 60 RSSNQKVHNDGFVLEDVPHLTNFLPDLP--SYPNPLKKSQAYAVVKQTFVSPEDAVAQNI 117
R +++ V +L V + LP YPNP KK + F D + N
Sbjct: 8 RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKTDYIMYNP 63
Query: 118 VIQKD-------SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGL 170
+ + S + A R +++F E IVTCGG+CPG+N VIR I
Sbjct: 64 RPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTG 123
Query: 171 SYMYGVDEILGIEGGYRGFY---SKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVD 227
+Y V ++G GY G S+ + L V +IH GGTIL +SRG D ++VD
Sbjct: 124 INVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVD 183
Query: 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287
+E G+N ++ +GGDGTQ+GA +I +E ++RG+ ++V G+PKTIDND++ ++FGF T
Sbjct: 184 TLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQT 243
Query: 288 AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE 347
AVE+A +AI AA+ E S GVG+VKLMGR SGFI+ A +AS + CL+PE+P +
Sbjct: 244 AVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ 303
Query: 348 GPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQK 407
+ +ER+ + VI+VAEG GQ++ DASGN+ L+DIG+ LT+K
Sbjct: 304 ---EVMSLLERRFCHSRSCVIIVAEGFGQDW----GRGSGGYDASGNKKLIDIGVILTEK 356
Query: 408 IKDHF--TKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG 465
+K K + +KYIDP+YMIRA P + +D ++C LA AVH AMAG TG +
Sbjct: 357 VKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIA 416
Query: 466 PVNSRHAYIPIARVTETQKTVKLTDRMWARLLASTNQPSFLNCSEVLHHQEKAGRKTTEV 525
++ + +PI T ++ + L ++W ++ T S+V ++ R+ E
Sbjct: 417 MRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG----SDVRLARKLEIRRELEA 472
Query: 526 INSERT 531
IN R
Sbjct: 473 INRNRD 478
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 294 bits (755), Expect = 2e-93
Identities = 89/496 (17%), Positives = 175/496 (35%), Gaps = 109/496 (21%)
Query: 81 NFLPDLPS------------YPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVH 128
++P LP+ Y + Q +K+ F + I+ + +
Sbjct: 12 KYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFK---NTYGLPIISFTEGESSLS 68
Query: 129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRG 188
F S + I+ GG PG + VI + + ++ G +GG G
Sbjct: 69 F------------SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLG 116
Query: 189 FYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGD 243
+ + L+ ++N GG + +S NK + ++ +N + IIGGD
Sbjct: 117 LLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGD 176
Query: 244 GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHV 301
+ AA++ + +K G + V G+PKTID D+ I+ SFGFD+A + I
Sbjct: 177 DSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCR 236
Query: 302 EVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE-GPGGLFEFI---- 356
+ S + VKLMGR + +++ L + + C++ E + + + +
Sbjct: 237 DAMSTKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEEVLAKKKTLSEIIDEMVSVI 295
Query: 357 -ERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKV 415
+R L + V++V EG EF+ + + E ++ + +K+K+ F
Sbjct: 296 LKRSLNGDNFGVVIVPEGLI-EFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAK 354
Query: 416 -----------------QKMMINMKYIDPTYMIR-------------------------- 432
+++ ++ DP
Sbjct: 355 LSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGE 414
Query: 433 -----------------AIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG-------PVN 468
+ + D+ YC L ++AV + G TG+ P +
Sbjct: 415 YKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD 474
Query: 469 SRHAYIPIARVTETQK 484
+P+ + ++
Sbjct: 475 WIAGGVPLTMLMNMEE 490
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 187 bits (477), Expect = 4e-54
Identities = 66/372 (17%), Positives = 134/372 (36%), Gaps = 44/372 (11%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYG-VDEILGIEGGYRGFYSKNTLTLSPKVVND 204
A GG+ IN ++ G + I G G +++ + +
Sbjct: 5 NAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAA 64
Query: 205 IHK---RGGTILRTSR--------GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253
I + R + ++++ + I + GG + +
Sbjct: 65 ISALRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVS 124
Query: 254 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE---NGV 310
+ G + +PKT+DND+ + D GF + + + A +V S+ V
Sbjct: 125 QLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKV 184
Query: 311 GIVKLMGRYSGFISMYATLASRD----VDCCLIPESPFYLEGPGGLFEFIERQLKENGHM 366
++++MGR++G+I+ LAS L PE F + ++ +K+ G+
Sbjct: 185 FVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFGYC 241
Query: 367 VIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKY-- 424
+VV+EG + + + +DA G+ L + + +K+ + +KY
Sbjct: 242 SVVVSEGVKGD-DGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEG--------LGLKYHW 292
Query: 425 IDPTYMIRA---IPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG-------PVNSRHAYI 474
Y+ RA I S +D + +AV A+ G P +
Sbjct: 293 GVADYLQRAARHIAS-KTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMA 351
Query: 475 PIARVTETQKTV 486
+++V +K +
Sbjct: 352 QLSQVANVEKMM 363
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 184 bits (470), Expect = 4e-54
Identities = 98/366 (26%), Positives = 154/366 (42%), Gaps = 69/366 (18%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N +R +V Y + V E+ GI GY G S L V DI R
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIY-HDV-EVYGIYNGYAGLISGKIEKLELGSVGDIIHR 63
Query: 209 GGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT L T+R K + N++ GI + +IGGDG+ GA + + G
Sbjct: 64 GGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH----GFPC 119
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++G I
Sbjct: 120 V--GVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMGRHAGDI 176
Query: 324 SMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-GHMVIVVAEGAGQEFVAQS 382
+++A LA + LIPE+ + + + ++R + H +I+VAEG G
Sbjct: 177 ALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVG------- 225
Query: 383 MPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRA--------- 433
G+ ++I++ R
Sbjct: 226 -----------------SGVEFGKRIEEE---------------TNLETRVSVLGHIQRG 253
Query: 434 -IPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRM 492
PS +D + + L AV + G G VG N++ I + ET+ TV+
Sbjct: 254 GSPS-AADRVLASRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQ 312
Query: 493 WARLLA 498
++ L+
Sbjct: 313 LSKELS 318
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 182 bits (464), Expect = 3e-53
Identities = 86/377 (22%), Positives = 139/377 (36%), Gaps = 91/377 (24%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
I+T GG PG+N +R + G+ E+ GI G+ G + + L + V +
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIA-NGL-EVFGIRYGFAGLVAGDIFPLESEDVAHLINV 63
Query: 209 GGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GT L ++R ++ ++ GI+ V +IGGDG+ GA + + G
Sbjct: 64 SGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH----GFNS 119
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN------AAH-----VEVESVENGVGI 312
G+P TIDNDI D + G+DTA A AI+ ++H V V
Sbjct: 120 I--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHRVFIVNV--------- 168
Query: 313 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-GHMVIVVA 371
MGR G I+M +A D +IPE P+ +E + +++ + H ++VVA
Sbjct: 169 ---MGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVA 221
Query: 372 EGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMI 431
EG ++K + + +
Sbjct: 222 EGVM------------------------TADQFMAELKKY---------------GDFDV 242
Query: 432 RA----------IPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTE 481
RA P+ SD + + L AVH + G G VG N + I + +
Sbjct: 243 RANVLGHMQRGGTPT-VSDRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFD 301
Query: 482 TQKTVKLTDRMWARLLA 498
L+
Sbjct: 302 ESHRGDYDLLKLNADLS 318
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 180 bits (459), Expect = 1e-52
Identities = 87/354 (24%), Positives = 140/354 (39%), Gaps = 69/354 (19%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V G+ E++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVVRSALT-EGL-EVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 209 GGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT L ++R + ++N++ RGI+ + +IGGDG+ GA + + G
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM----GFPC 120
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GF TA+ AI+ S + + +V++MGRY G +
Sbjct: 121 I--GLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQR-ISVVEVMGRYCGDL 177
Query: 324 SMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-GHMVIVVAEGAGQEFVAQS 382
++ A +A + ++PE F E L I+ + + H ++ + E
Sbjct: 178 TLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMC------- 226
Query: 383 MPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAI-------- 434
L I+ RA
Sbjct: 227 -----------------DVDELAHFIEKE---------------TGRETRATVLGHIQRG 254
Query: 435 --PSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTV 486
P D I + + A+ +AG+ G VG N + + I E K
Sbjct: 255 GSPV-PYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRP 307
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 172 bits (438), Expect = 2e-46
Identities = 62/355 (17%), Positives = 118/355 (33%), Gaps = 42/355 (11%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLT-LSPKVVNDIH 206
IV G GIN+ + + +S G I G+ G ++ L+ K +
Sbjct: 398 IVNVGAPAGGINSAVYSMATYCMSQ--GH-RPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 207 KRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQ 262
RGG+ + T+R D I + + + I+GG + + + E +
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFR 514
Query: 263 VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 322
+ + IP T+ N++ + S G DTA+ + S +V G SG+
Sbjct: 515 IPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGY 574
Query: 323 ISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGAGQE 377
++ YA+LA +PE LE E++ + ++ +I+ + A +
Sbjct: 575 LATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGKLILKSTNASKA 633
Query: 378 FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIR-AIPS 436
K+ + T + K P ++ + +PS
Sbjct: 634 LS-------------------------ATKLAEVITAEADGRFDAKPAYPGHVQQGGLPS 668
Query: 437 NGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDR 491
D T +A AV + +++T V +
Sbjct: 669 -PIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGS 722
Score = 148 bits (376), Expect = 3e-38
Identities = 60/269 (22%), Positives = 104/269 (38%), Gaps = 61/269 (22%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLT---LSPKVVND 204
++T GG PG+N+ +R IV + G + GY G + V
Sbjct: 8 VMTSGGDAPGMNSNVRAIVRSAIFK--GC-RAFVVMEGYEGLVRGGPEYIKEFHWEDVRG 64
Query: 205 IHKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE---- 255
GGT + T+R ++ + G++ + + GGDG+ GA L E
Sbjct: 65 WSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 256 -------------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA---- 298
+R + + G +IDND++ D + G +A++ +AI+
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEAT 184
Query: 299 --AH-----VEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGG 351
+H VEV MGR G++++ A +A+ D IPE P
Sbjct: 185 ANSHSRAFVVEV------------MGRNCGWLALLAGIAT-SADYIFIPEKPA---TSSE 228
Query: 352 LFEFIERQLKEN-----GHMVIVVAEGAG 375
+ + + ++ ++VVAEGA
Sbjct: 229 WQDQMCDIVSKHRSRGKRTTIVVVAEGAI 257
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 171 bits (435), Expect = 5e-46
Identities = 58/271 (21%), Positives = 102/271 (37%), Gaps = 15/271 (5%)
Query: 128 HFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGY 186
H R P+ Y ++ G G+N +R V GL G +L + G+
Sbjct: 390 HIRPPAPKSGSY------TVAVMNVGAPAAGMNAAVRSTVRIGLIQ--GN-RVLVVHDGF 440
Query: 187 RGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDG 244
G V +GG+ L + R +I NI I + IIGG
Sbjct: 441 EGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFE 500
Query: 245 TQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEV 303
G + + ++ L + IP T+ N++ D S G DTA+ +
Sbjct: 501 AYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSA 560
Query: 304 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363
+ V I++ MG Y G+++ A LA+ D I E PF + E + +++K
Sbjct: 561 AGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTT 619
Query: 364 -GHMVIVVAEGAGQEFVAQSMPAVDEKDASG 393
+++ E + + + + ++ G
Sbjct: 620 VKRGLVLRNEKCNENYTTDFIFNLYSEEGKG 650
Score = 157 bits (400), Expect = 2e-41
Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 33/254 (12%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFY--SKNTLTLSPKVVNDI 205
++T GG G+N +R +V G+ G + + GY+G + + + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVVRVGIFT--GA-RVFFVHEGYQGLVDGGDHIREATWESVSMM 76
Query: 206 HKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE----- 255
+ GGT++ ++R + N+ RGI + +IGGDG+ GA E
Sbjct: 77 LQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLL 136
Query: 256 ------------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEV 303
R + + G+ +IDND D + G D+A+ ++A
Sbjct: 137 SDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTA 196
Query: 304 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363
+S + ++++MGR+ G++++ +L+ D IPE P L + +
Sbjct: 197 QSHQR-TFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSET-RTR 253
Query: 364 G--HMVIVVAEGAG 375
G +I+VAEGA
Sbjct: 254 GSRLNIIIVAEGAI 267
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 170 bits (433), Expect = 1e-45
Identities = 47/270 (17%), Positives = 96/270 (35%), Gaps = 14/270 (5%)
Query: 134 PREKVYFKSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFY-S 191
++ SD + IV G +N R LS+ + + I G+ G +
Sbjct: 383 DGSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLSHGH---KPYAIMNGFSGLIQT 439
Query: 192 KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGA 249
LS V + H GG+ + T+R D I + ++ + I+GG +
Sbjct: 440 GEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSL 499
Query: 250 ALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVEN 308
+ + + + IP T+ N++ + S G DT + + +
Sbjct: 500 KQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRR 559
Query: 309 GVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG---- 364
V + ++ G +SG+I+ + L + PE L ++ + +
Sbjct: 560 RVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENR 618
Query: 365 -HMVIVVAEGAGQEFVAQSMPAVDEKDASG 393
++V E A + Q + + + + G
Sbjct: 619 NGKLLVRNEQASSVYSTQLLADIISEASKG 648
Score = 151 bits (384), Expect = 3e-39
Identities = 57/256 (22%), Positives = 110/256 (42%), Gaps = 36/256 (14%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTL--TLSPKVVNDIH 206
++T GG PG+N +R +V + +G ++ + GY G ++ + V
Sbjct: 10 VMTSGGDSPGMNAAVRAVVRTGIH-FGC-DVFAVYEGYEGLLRGGKYLKKMAWEDVRGWL 67
Query: 207 KRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE------ 255
GGT++ T+R + N+ +GI+ + + GGDG+ GA L E
Sbjct: 68 SEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVD 127
Query: 256 -----------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
+++ G+ +IDND++ D + G +A+E ++ +
Sbjct: 128 ELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATAK 187
Query: 305 SVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN- 363
S +V++MGR+ G++++ A +A+ D IPE G + ++ + +
Sbjct: 188 SHSR-AFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAV---PHGKWQDELKEVCQRHR 242
Query: 364 ----GHMVIVVAEGAG 375
+ I+VAEGA
Sbjct: 243 SKGRRNNTIIVAEGAL 258
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 171 bits (434), Expect = 1e-45
Identities = 50/274 (18%), Positives = 99/274 (36%), Gaps = 14/274 (5%)
Query: 131 RAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGF 189
+ + +S + I+ G +N R L+ G + I G+ G
Sbjct: 585 KYDDGSYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLAK--GH-RVFAIRNGFAGL 641
Query: 190 YSKNTLT-LSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQ 246
+ L+ V D H GG+ + T+R D + + + + IIGG
Sbjct: 642 IRHGAVRELNWIDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAF 701
Query: 247 KGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 305
+ + + + +P T+ N++ + S G DT + +A +
Sbjct: 702 TALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASA 761
Query: 306 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG- 364
+V++ G YSG+++ YA L + PE+P L+ E + R +E+
Sbjct: 762 SRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDG 820
Query: 365 ----HMVIVVAEGAGQEFVAQSMPAVDEKDASGN 394
+ + E A + + + A+ + G
Sbjct: 821 KNRSGKIFIHNEKASKVYTTDLIAAIIGEAGKGR 854
Score = 155 bits (393), Expect = 2e-40
Identities = 103/598 (17%), Positives = 202/598 (33%), Gaps = 117/598 (19%)
Query: 2 DHSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRS 61
SI L P + + R + P+ ++S + Q+ VV+ +R
Sbjct: 55 TDSIKEIWLESFPLSEVVEASGGRELRKPLQESVGYESE--ALLGYSPYQSGGVVIKLRL 112
Query: 62 SNQKVHNDG-------FVLEDVPHLTNFLPDLPS--YPNPLKKSQAYA------VVKQTF 106
SN + + F + L L ++ + P+ + + V+ +
Sbjct: 113 SNHDLEKNNDLPGEVTFFTASIDKLKAKLIEIGAEIIPSKIDLVEFSTRDPMGDVISFSS 172
Query: 107 VSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREI 166
++ P+ E+V + + + I+T GG PG+N +R +
Sbjct: 173 YPSLNSKKITSPDFFLHPKKEVRSEESIVEQVKSEEGKKKIAIITSGGDAPGMNAAVRAV 232
Query: 167 V-CGLSYMYGVDEILGIEGGYRGFYSKNTL--TLSPKVVNDIHKRGGTILRTSR------ 217
G+ Y G ++ GY G + L + V + GGTI+ T+R
Sbjct: 233 TRAGIFY--GC-KVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKEFRE 289
Query: 218 -GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKR 259
G + N+ GI+ + + GGDG+ GA L KE +
Sbjct: 290 RWGRL--QACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYET 347
Query: 260 GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRY 319
+ + G+ +IDND+ D + G +++E ++ S +V++MGR+
Sbjct: 348 HRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATAASHSR-AFVVEVMGRH 406
Query: 320 SGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGA 374
G++ + + +A+ D IPE P + +++ + ++VAEGA
Sbjct: 407 CGWLGLMSGIAT-GADYIFIPERPP---SESNWKDDLKKVCLRHREKGRRKTTVIVAEGA 462
Query: 375 GQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRA- 433
D N + + +KD ++ +D R
Sbjct: 463 I--------------DDQLNPITSEE-------VKDVLVEIG--------LD----TRIT 489
Query: 434 ---------IPSNGSDNIYCTLLAHSAVHGAMAGFTGFT---VGPVNSRHAYIPIARVTE 481
P D T+ AV + + + ++ P+
Sbjct: 490 RLGHVQRGGAPC-AFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVA 548
Query: 482 TQKTVK--LTDRMWARLLA------STNQPSFLNCSEVLHHQEKA---GRKTTEVINS 528
KTV + + + + L +T+ +FL+ S+ R +I+
Sbjct: 549 QTKTVSAAIEAKDFDKALQLRDQEFATSYENFLSVSKYDDGSYLVPESSRLNIAIIHV 606
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 166 bits (421), Expect = 6e-44
Identities = 47/256 (18%), Positives = 97/256 (37%), Gaps = 15/256 (5%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLT-LSPKVVNDIH 206
I+ G G+N+ + + +S + I G+ G ++ ++ +
Sbjct: 576 IINVGAPAGGMNSAVYSMATYCMSRGH---VPYAIHNGFSGLARHESVRSINWLDIEGWG 632
Query: 207 KRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQ 262
GG+ + T+R D I E G + + ++GG + + L+
Sbjct: 633 SLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLR 692
Query: 263 VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 322
+ + IP TI N++ + S G DT + + + N V +V++ G SG+
Sbjct: 693 IPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGY 752
Query: 323 ISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGAGQE 377
I+ +A LA +PE L ++ + +I+ +E A +
Sbjct: 753 IATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENASKV 811
Query: 378 FVAQSMPAVDEKDASG 393
+ + + + +ASG
Sbjct: 812 LTTEVISTIIDDEASG 827
Score = 152 bits (387), Expect = 2e-39
Identities = 73/341 (21%), Positives = 124/341 (36%), Gaps = 61/341 (17%)
Query: 78 HLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKD-----SPRGVHFRRA 132
L + + PN + + Y V D + +++ +
Sbjct: 111 LLKDGGHPVQQSPNEISPFEVYTV---------DPLG-SLIGFSGFKNPFAVNERSLLPK 160
Query: 133 GPREKVYFKSDEVRAC---------IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIE 183
EK Y D+ ++T GG PG+N +R +V Y G ++ I
Sbjct: 161 VSEEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-KGC-KVFCIH 218
Query: 184 GGYRGFYSKNTLTLSP---KVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGIN 235
GY G + V GGT + T+R K N+ D GI+
Sbjct: 219 EGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMGID 278
Query: 236 QVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278
+ + GGDG+ GA E + + G +IDND++
Sbjct: 279 ALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338
Query: 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCL 338
D + G ++++ RAI+ S IV++MGR+ G++ + A LA+ D L
Sbjct: 339 TDATIGAFSSLDRICRAIDYIDATANSHSR-AFIVEVMGRHCGWLGLLAGLAT-SADYIL 396
Query: 339 IPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGA 374
IPE P + + + ++ +++VAEGA
Sbjct: 397 IPEKPA---SSREWQDQMCDIVGKHRARGKRKTIVIVAEGA 434
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 8e-12
Identities = 68/484 (14%), Positives = 139/484 (28%), Gaps = 140/484 (28%)
Query: 8 RSLSRSPSPSISPFNSKRMIL---NPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQ 64
++ R PS + +R L N VF K+N VSR Q
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----------VSRL------------Q 135
Query: 65 KVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVV-------KQTFVSPEDAVAQNI 117
L L +L + ++ K V +
Sbjct: 136 PYLK----------LRQALLEL--------RPAKNVLIDGVLGSGKTWVAL---DVCLSY 174
Query: 118 VIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGV- 176
+Q + + + + L I+ + +
Sbjct: 175 KVQCKMDFKIFWLNLK-------NCNSPETVLEMLQKLLYQIDPNWTS---RSDHSSNIK 224
Query: 177 DEILGIEGGYRGF-----YSKNTLTL----SPKVVN--DIHKRGGTILRTSRGGHDTNKI 225
I I+ R Y L L + K N ++ + IL T+R T+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK---ILLTTRFKQVTD-F 280
Query: 226 VDNIEDRGINQVYIIGGDGTQKGAALIYK--EVEKRGL-QVAVAGIPKTIDNDIAVIDKS 282
+ I+ + + +L+ K + + L + + P+ +++I +S
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR----LSIIAES 336
Query: 283 FGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFIS---------MYATLA--S 331
+ N HV + + I++ ++ M+ L+
Sbjct: 337 I-----RDGLATWDNWKHVNCDKLTT---IIES------SLNVLEPAEYRKMFDRLSVFP 382
Query: 332 RDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDA 391
IP L I + ++ MV+V + S+ EK
Sbjct: 383 PSAH---IPTI---------LLSLIWFDVIKSDVMVVV------NKLHKYSLV---EKQP 421
Query: 392 SGNRL-LLDIGLWLTQKIKDHFTKVQKMMINMKYIDP-TYMIRAIPSNGSDNIYCTLLAH 449
+ + + I L L K+ ++ + + +++ Y P T+ + D + + + H
Sbjct: 422 KESTISIPSIYLELKVKL-ENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 450 SAVH 453
H
Sbjct: 480 ---H 480
Score = 41.8 bits (97), Expect = 6e-04
Identities = 55/427 (12%), Positives = 119/427 (27%), Gaps = 123/427 (28%)
Query: 2 DHSISSRSLSRSPSPSISPFNSKRM------ILNPVFHKFNFDSRNFEIKPLVSRQNRPV 55
DHS + + S + + +L V + +++ N K L++ + + V
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 56 VVAVRSSNQKV-----HNDGFVLEDVPHL-TNFL----PDLPS---YPNPLKKSQAYAVV 102
+ ++ H+ ++V L +L DLP NP + S +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 103 KQTFVSPE-----DAVAQNIVIQKDSPRGVHFRRAGPRE-KVYFKS-----DEVRACIVT 151
+ + + + +I+ P E + F +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESS------LNVLEPAEYRKMFDRLSVFPPSAH---IP 388
Query: 152 CGGLC----PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLS--PKVVND- 204
L I + + +V L L + S ++ L K+ N+
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKL-----HKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 205 -IHKRGGTIL---RTSRGGHDTNKIVDNIEDRGINQVYI---IGGDGTQKGAALIY--KE 255
+H+ I+ + D++ ++ D+ Y IG + K
Sbjct: 444 ALHRS---IVDHYNIPK-TFDSDDLIPPYLDQ-----YFYSHIG-----------HHLKN 483
Query: 256 VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKL 315
+E + + F F +E+ R + A S+ N + +K
Sbjct: 484 IEHPER---MTLFRMVFLD--------FRF---LEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 316 MGRY---------------SGFISMYATLASRDVDCCLI------PESPFYLEGPGGLFE 354
Y F+ L+ + + E
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA------ 583
Query: 355 FIERQLK 361
+Q++
Sbjct: 584 --HKQVQ 588
Score = 41.0 bits (95), Expect = 0.001
Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 71/245 (28%)
Query: 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYL----EGPGGLFEF 355
H++ E G + +Y +S++ + DC + + P + E +
Sbjct: 6 HMDFE-----TGEHQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-----IDH 53
Query: 356 I--ERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFT 413
I + + +E V + + V + +L IK
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----------FLMSPIKTEQ- 102
Query: 414 KVQKMMINMKYI---DPTYMIRAIPSNGSDNI-----YCTL------LAHS---AVHGAM 456
Q M+ YI D Y N+ Y L L + + G +
Sbjct: 103 -RQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-V 158
Query: 457 AGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRM-----WARLLASTNQP-SFLNCSE 510
G G T + + K+ +M W L + N P + L +
Sbjct: 159 LGS-GKTW-------------VALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQ 203
Query: 511 VLHHQ 515
L +Q
Sbjct: 204 KLLYQ 208
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 5e-07
Identities = 92/572 (16%), Positives = 165/572 (28%), Gaps = 225/572 (39%)
Query: 69 DGFVLEDVPH-----LTNFLPDLPSYPNPLKKSQAYAVVK-------QTFVSPED--AVA 114
+GF +D P + FL + S P K Q V+ ++ D A+A
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 115 QNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINT-VIREIVCGLSYM 173
++ + D+ K Y A I+ N+ + R + G + +
Sbjct: 106 AKLLQENDTTLVKTKELI----KNYI-----TARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 174 YGV-----------DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222
+ +E+ R Y T V + I T+ R D
Sbjct: 157 VAIFGGQGNTDDYFEEL-------RDLYQ----TYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 223 NKI----------VDNIEDR----------------GINQV--YIIGGDGTQKGAALIYK 254
K+ ++N + G+ Q+ Y++ T K
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV----TAKLLGFTPG 261
Query: 255 EVEKR---------GLQVAVAGIPKTIDNDIAVID--KSFGFDTAVE----------EAQ 293
E+ GL AVA IA D +SF F + +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVA---------IAETDSWESF-FVSVRKAITVLFFIGVRCY 311
Query: 294 RA-----INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG 348
A + + +E +S+EN G+ M L+ ++
Sbjct: 312 EAYPNTSLPPSILE-DSLENNEGVPSPM------------LSISNLT------------- 345
Query: 349 PGGLFEFIER---QLKENGHMVIVVAEGAGQEFV----AQSMPAVD-----EKDASGNRL 396
+ +++ + L + I + GA + V QS+ ++ K SG
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGA-KNLVVSGPPQSLYGLNLTLRKAKAPSG--- 401
Query: 397 LLDIGLWLTQ-KIKDHFTKVQKMMINMKYIDPT-------YMIRA--------------- 433
LD Q +I F++ +K+ + ++ P ++ A
Sbjct: 402 -LD------QSRIP--FSE-RKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 434 ------IP----SNGSD------NIY---CTLLAHSAVHGAMAGFTGFT----VGP-VNS 469
IP +GSD +I + V T GP S
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 470 RHAYIPIARVTETQKTVKLTDRMWARL-LAST 500
+ +T + D R+ +A T
Sbjct: 511 G-----LGVLTH-----RNKDGTGVRVIVAGT 532
Score = 51.2 bits (122), Expect = 8e-07
Identities = 56/277 (20%), Positives = 90/277 (32%), Gaps = 89/277 (32%)
Query: 190 YSKNTLTLSP-KVVND------IHKRG--GTILR------TSRGGHDTNKIVDNIEDRGI 234
+ K+T S +V + IH G G +R D + I + I
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI-FKEI 1710
Query: 235 NQV---YIIGGDG--------TQKGAAL------IYKEVEKRGLQV---AVAGIPKTIDN 274
N+ Y + TQ AL +++++ +GL AG
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQ--PALTLMEKAAFEDLKSKGLIPADATFAG------- 1761
Query: 275 DIAVIDKSFG-FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI--------SM 325
S G + A+ A+ +V S+E+ V +V G S
Sbjct: 1762 ------HSLGEY-AAL--------ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 326 YATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVV---AEGAGQEFVAQS 382
Y +A + P L +ER K G +V +V E Q A
Sbjct: 1807 YGMIA-------INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN-QQYVAAGD 1858
Query: 383 MPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMM 419
+ A+D + +L I L QKI ++QK +
Sbjct: 1859 LRALDT--VT--NVLNFIKL---QKID--IIELQKSL 1886
Score = 47.0 bits (111), Expect = 1e-05
Identities = 52/321 (16%), Positives = 86/321 (26%), Gaps = 142/321 (44%)
Query: 50 RQNRPVVVAV--RSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQA----YAVVK 103
+ V R+ N GF + D+ + N P + +K + Y+
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDI-VINN--PVNLTIHFGGEKGKRIRENYS--A 1690
Query: 104 QTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVY-FKSDEVRACIVTCGGLC------ 156
F + D + I F+ Y F+S++ GL
Sbjct: 1691 MIFETIVDGKLKTEKI---------FKEINEHSTSYTFRSEK---------GLLSATQFT 1732
Query: 157 -PGINTV-------IRE--------IVCGLSYMYGVDEILGIEGGYRGFYS-----KNTL 195
P + + ++ G S LG E Y+ + +
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHS--------LG-E------YAALASLADVM 1777
Query: 196 TLSP--KVVNDIHKRG---------GTILRTSRG-------------------------G 219
++ +VV RG + R++ G G
Sbjct: 1778 SIESLVEVV---FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 220 HDTNKIV----DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVA-----GIPK 270
T +V N+E NQ Y+ GD R L + K
Sbjct: 1835 KRTGWLVEIVNYNVE----NQQYVAAGD--------------LRALDTVTNVLNFIKLQK 1876
Query: 271 TIDNDIAVIDKSFGFDTAVEE 291
I DI + KS + VE
Sbjct: 1877 -I--DIIELQKSLSLE-EVEG 1893
Score = 47.0 bits (111), Expect = 2e-05
Identities = 78/512 (15%), Positives = 141/512 (27%), Gaps = 184/512 (35%)
Query: 3 HSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSS 62
H+++++ L + + + +K +I N + +R +P + N + AV
Sbjct: 102 HALAAKLLQENDTTLVK---TKELIKN-----Y-ITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 63 NQKVH--------NDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVA 114
N ++ D + E L DL Y Q Y V+ +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEE--------LRDL--Y-------QTYHVLVGDLIKFSAETL 195
Query: 115 QNIVIQKDS-----PRGVHFRR--AGPR---EKVYFKSDEVRAC-----------IVTC- 152
++ +G++ P +K Y S + +C +VT
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAK 254
Query: 153 -GGLCPGINTVIREIVCGL--------------------SYMYGVDEILG----IEGGYR 187
G PG +R + G S+ V + + I G R
Sbjct: 255 LLGFTPGE---LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--GVR 309
Query: 188 GFYSKNTLTLSPKVVNDIHKRG-GT------ILRTSRGGHDTNKIVD--NIEDRGINQVY 238
+ + +L P ++ D + G I ++ V+ N QV
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTNSHLPAGKQVE 367
Query: 239 I--IGGD------GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA---------VIDK 281
I + G G + +L GL + + D +
Sbjct: 368 ISLVNGAKNLVVSGPPQ--SL-------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 282 SFG-----F-----DTAVEEAQRAINAAHVE---------VESVENGVGIVKLMGRYSGF 322
F F A + + + +V V +G + R
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-----R---- 469
Query: 323 ISMYATLASRDVDCCLIPESPFYLE-------------GPGGLFEFIERQLKENGHMVIV 369
+ +++ R VDC I P E GPGG G +
Sbjct: 470 -VLSGSISERIVDC--IIRLPVKWETTTQFKATHILDFGPGGASGL--------GVLTHR 518
Query: 370 VAEGAGQEFVAQSMPAVDEKDASGNRLLLDIG 401
+G G + +D D G
Sbjct: 519 NKDGTGVRVIVAG--TLDINPDD------DYG 542
Score = 38.5 bits (89), Expect = 0.006
Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 85/245 (34%)
Query: 90 PNP------LKKSQAYAVVKQTFVS-PEDAVAQNIVIQ-KDSPRGVHFRRAGPREKVYFK 141
P+P L + Q V +T P + + I + + + +GP + +Y
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAG---KQVEISLVNGAK--NLVVSGPPQSLY-- 387
Query: 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVD--EILG----IEGGYRG------F 189
G+N +R+ G+D I ++ R F
Sbjct: 388 ----------------GLNLTLRKAKAP----SGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 190 YSKNTLTLSP---KVVNDIHKRGGTI----LRT----SRGGHDTNKIVDNIEDRGINQV- 237
+S L P + D+ K + ++ + G D + +I +R ++ +
Sbjct: 428 HSH---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 238 ---------------YIIG-GDGTQKG-AALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280
+I+ G G G L ++ + G++V VAG T+D + D
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---TLDIN---PD 538
Query: 281 KSFGF 285
+GF
Sbjct: 539 DDYGF 543
Score = 31.2 bits (70), Expect = 1.0
Identities = 47/310 (15%), Positives = 80/310 (25%), Gaps = 126/310 (40%)
Query: 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYAT---------------- 328
F+ + E AA E + +L+G++ G++S
Sbjct: 37 FNKILPEPTEGF-AADDEPTTP------AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 329 ------LASRDV--------------------------DCCLIPESPFYLEGPGGLFEFI 356
L D+ ++ + PF + LF +
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 357 ERQLKENGHMVIVVAEGAGQ-----------EFVAQSMPAVDE-KDASGNRLL------- 397
G+ +V G GQ + V + S L
Sbjct: 150 GE-----GNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 398 ---------LDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRA---IPSNGSDNIYCT 445
L+I WL D Y++ P I
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTP--------------DKDYLLSIPISCPL-----IGVI 244
Query: 446 LLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIARVTETQKTVKLTDRMWARLLA-STNQPS 504
LAH V A GFT G + S + T + + +T A +A + + S
Sbjct: 245 QLAHYVV---TAKLLGFTPGELRSY-----LKGATGHSQGL-VT----AVAIAETDSWES 291
Query: 505 FL-NCSEVLH 513
F + + +
Sbjct: 292 FFVSVRKAIT 301
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.28
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 481 ETQKTVKLTDRMWARLLASTNQPSF-LNCS 509
E Q KL + +L A + P+ + +
Sbjct: 18 EKQALKKLQASL--KLYADDSAPALAIKAT 45
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 31.9 bits (73), Expect = 0.44
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 13/107 (12%)
Query: 199 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT--QKGAALIYK 254
P + + K G + T + G T + + + GGDGT + +
Sbjct: 45 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIA-- 101
Query: 255 EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301
++ + + IP ND ++ + A I H
Sbjct: 102 ---EKPNRPKLGVIPMGTVNDFG---RALHIPNDIMGALDVIIEGHS 142
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli}
SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 31.5 bits (72), Expect = 0.67
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 199 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT--QKGAALIYK 254
+ + + + G + T G + V+ G+ V GGDGT + ALI
Sbjct: 47 REAIMLLREEGMTIHVRVTWEKGDAA-RYVEEARKFGVATVIAGGGDGTINEVSTALIQC 105
Query: 255 EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301
E + A+ +P ND A S G A+++A + A
Sbjct: 106 EGDDI---PALGILPLGTANDFA---TSVGIPEALDKALKLAIAGDA 146
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response
regulator, beryllium fluoride, transcription factor,
activated, virulence; 1.90A {Escherichia coli} SCOP:
c.23.1.1 PDB: 2pkx_A
Length = 121
Score = 28.6 bits (65), Expect = 2.2
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 354 EFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGL 402
++ Q+++ GH V + ++ D ++D+GL
Sbjct: 14 HHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP----DI----AIVDLGL 54
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 29.1 bits (66), Expect = 3.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 359 QLKENGHMVIVVAEGAGQEFV 379
L ENG ++I + E Q
Sbjct: 182 LLAENGKLIIPIEEDYTQVLY 202
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 29.1 bits (66), Expect = 3.3
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK----SFG 284
I+D+ +YI+ T+ AL + V K V K +D + V D G
Sbjct: 75 IKDKRTENLYILPASQTRDKDALTREGVAK------VLDDLKAMDFEFIVCDSPAGIETG 128
Query: 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 321
A+ A AI + EV SV + I+ ++ S
Sbjct: 129 ALMALYFADEAIITTNPEVSSVRDSDRILGILASKSR 165
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA
binding domain, phosphorylation; 1.58A {Mycobacterium
tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Length = 233
Score = 29.0 bits (66), Expect = 3.5
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 354 EFIERQLKENGHMVIVVAEGA-GQEFVAQSMPAVDEKDASGNRLLLDIGL 402
+ER L+ +G V +GA ++ P ++LDI +
Sbjct: 21 ASLERGLRLSGFEVATAVDGAEALRSATENRPDA---------IVLDINM 61
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 28.8 bits (65), Expect = 4.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 358 RQLKENGHMVIVVAEGAGQEFV 379
QLKE G M++ + G Q+
Sbjct: 153 EQLKEGGIMILPIGVGRVQKLY 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.8 bits (64), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 286 DTAVEEAQRA--INAAHVEVES 305
D A EE R IN +HVE ++
Sbjct: 335 DNAPEEKARGITINTSHVEYDT 356
>3r0j_A Possible two component system response transcript positive
regulator PHOP; beta-alpha fold, winged
helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Length = 250
Score = 27.8 bits (61), Expect = 8.3
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 16/77 (20%)
Query: 354 EFIERQLKENGHMVIVVAEGA-GQEFVAQSMPAVDEKDASGNRLLLDI------GLWLTQ 406
E + LK G V GA + ++ P DA ++LD+ G + +
Sbjct: 37 ELLSVSLKFQGFEVYTATNGAQALDRARETRP-----DA----VILDVXMPGMDGFGVLR 87
Query: 407 KIKDHFTKVQKMMINMK 423
+++ + + +
Sbjct: 88 RLRADGIDAPALFLTAR 104
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 27.5 bits (62), Expect = 9.3
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 226 VDNIEDRGINQVYIIGGDGTQKGAALI-----------YKEVEKRGLQVAVAGIPKTIDN 274
V + D G + +G +K L+ + +RG + +T
Sbjct: 78 VKGVRDMG-GVFEVETEEGVEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRTSYP 136
Query: 275 DIAVIDKSFGFDTAVEEA 292
+ V
Sbjct: 137 RVYAA---GVARGKVPGH 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,225,163
Number of extensions: 527746
Number of successful extensions: 1450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1345
Number of HSP's successfully gapped: 55
Length of query: 534
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 436
Effective length of database: 3,965,535
Effective search space: 1728973260
Effective search space used: 1728973260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)