Query 009445
Match_columns 534
No_of_seqs 244 out of 865
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 96.9 0.28 9.5E-06 54.7 25.8 113 55-181 55-172 (724)
2 3ubt_Y Modification methylase 5.6 1E+03 0.034 22.5 6.7 81 445-531 62-162 (331)
3 3r8s_4 50S ribosomal protein L 5.5 1.9E+02 0.0065 19.3 0.8 13 521-533 18-31 (38)
4 2zjr_4 50S ribosomal protein L 5.5 1.9E+02 0.0066 19.1 0.8 13 521-533 18-30 (37)
5 1g70_B RSG-1.2 peptide; peptid 5.0 1.7E+02 0.0057 17.1 0.2 11 2-12 2-12 (26)
6 2z9e_A Cellulose synthase oper 3.7 2.5E+02 0.0086 25.0 0.4 20 490-509 65-86 (167)
7 3arc_K Photosystem II reaction 3.6 7.1E+02 0.024 16.3 2.4 14 337-350 15-28 (37)
8 3p8c_D Wiskott-aldrich syndrom 3.6 3E+02 0.01 26.6 0.9 28 447-474 125-159 (279)
9 4h0n_A DNMT2; SAH binding, tra 3.5 2.5E+03 0.084 20.2 7.8 49 483-532 112-169 (333)
10 3fov_A UPF0102 protein RPA0323 3.1 5.9E+02 0.02 21.6 2.2 37 493-529 27-65 (134)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=96.85 E-value=0.28 Score=54.74 Aligned_cols=113 Identities=17% Similarity=0.101 Sum_probs=70.3
Q ss_pred cccCCchHHHHHHHHhcCCCCCCCcCCCCcchhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009445 55 PDEHWQTLEVAHRIVFGYGHLTWEWKKGIRSYLHPMLFALLYKILVFLHLDTPFFMIKAPRLLQSLFSAVGDLYLYKFSR 134 (534)
Q Consensus 55 pDE~fQslE~ah~lv~G~G~~TWE~~~~iRS~~~p~l~a~~~~~l~~l~l~~~~~~~~~pRl~~a~~sa~~d~~~~~l~~ 134 (534)
.|.|+. .+-|-+.+.|.-... ..+| -....+.+.+.+++ .+|.+ +-.+.+.+-+++++++-.-+|-+++
T Consensus 55 ~D~yy~-~r~ar~~l~~~~~p~-~~~p--~g~~~~~l~a~l~~---i~g~s----l~~v~~~lp~ifg~L~vi~~yll~~ 123 (724)
T 3rce_A 55 NDGYAF-AEGARDMIAGFHQPN-DLSY--FGSSLSTLTYWLYS---ILPFS----FESIILYMSTFFASLIVVPIILIAR 123 (724)
T ss_dssp HHHHHH-HHHHHHHHHSCCCTT-SCCC--TTCHHHHHHHHHHH---SCSSC----HHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHhcCCCCC-CCCC--CcchHHHHHHHHHH---HcCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455553 666666666542211 1111 01233344444444 44543 3456677778888888888899999
Q ss_pred hhcChhHHHHHHHHHhhhhhhhhhhccccc-----hhHHHHHHHHHHhhccc
Q 009445 135 VLFGDHVAKWALFSQLANWFMFFCFNRTFS-----NSLETVLTLVGLYYWPT 181 (534)
Q Consensus 135 ~~~g~~~a~~~l~~~~~s~~~~~~~tRtls-----Ns~e~~l~~~al~~~~~ 181 (534)
+..|+.+|..+.++.+++++. ..||.. +.+|..+.+++++.|.+
T Consensus 124 el~~~~aGl~AAll~ai~P~~---i~RS~aG~~D~e~l~i~~~ll~~~~~i~ 172 (724)
T 3rce_A 124 EYKLTTYGFIAALLGSIANSY---YNRTMSGYYDTDMLVLVLPMLILLTFIR 172 (724)
T ss_dssp HTTCHHHHHHHHHHHTTSHHH---HHTSSTTCCSGGGGTTHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHHHHHHH---HHHhccccccchhHHHHHHHHHHHHHHH
Confidence 999988899988888888873 236544 35666666777776643
No 2
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=5.63 E-value=1e+03 Score=22.51 Aligned_cols=81 Identities=9% Similarity=-0.011 Sum_probs=48.7
Q ss_pred ccccccCCC--------CcCCCCChhhhhhhChHHHHhhhcCCCCCCCeEEeCccc-----------hHHHHHhhhcCCe
Q 009445 445 MRFLDCSPR--------EEKGILDESDRFMKDPVAFTSEITKNGSLPSHVVLFGSE-----------EILLRDLLKSYSF 505 (534)
Q Consensus 445 ~~fl~c~P~--------~~~~y~de~d~f~~~P~~~l~~~~~~~~~P~~~v~f~~l-----------~~~~~~~l~~~~y 505 (534)
...|...|| .+.+..|+....+.+-.+++++. -|.++|+ |+. .+.+.+-|++.||
T Consensus 62 ~D~l~ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~-----~Pk~~~~-ENV~gl~~~~~~~~~~~i~~~l~~~GY 135 (331)
T 3ubt_Y 62 CDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQK-----KPIFFLA-ENVKGMMAQRHNKAVQEFIQEFDNAGY 135 (331)
T ss_dssp CSEEECCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHH-----CCSEEEE-EECCGGGGCTTSHHHHHHHHHHHHHTE
T ss_pred ccEEEecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhcc-----CCeEEEe-eeecccccccccchhhhhhhhhccCCc
Confidence 345666666 12445677666666666677664 3777776 433 1235566777899
Q ss_pred EEEEEecCCCCccCC-CCCCeEEEEee
Q 009445 506 REIRRFFHAHFKVDR-DLQASVVVYAL 531 (534)
Q Consensus 506 ~~~~~~~~s~~~~~~-~~~~~i~v~~~ 531 (534)
.-.++..|+.--.-+ +|.+-++|=.|
T Consensus 136 ~v~~~vlna~~yGvPQ~R~Rvfivg~r 162 (331)
T 3ubt_Y 136 DVHIILLNANDYGVAQDRKRVFYIGFR 162 (331)
T ss_dssp EEEEEEEEGGGTTCSBCCEEEEEEEEE
T ss_pred EEEEEecccccCCCCcccceEEEEEEc
Confidence 999999998544333 34444444333
No 3
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=5.53 E-value=1.9e+02 Score=19.26 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=10.3
Q ss_pred CCCCeEEEEee-cC
Q 009445 521 DLQASVVVYAL-TS 533 (534)
Q Consensus 521 ~~~~~i~v~~~-~~ 533 (534)
||.|.+.|.|+ |+
T Consensus 18 rR~grv~Vick~nP 31 (38)
T 3r8s_4 18 KRDGVIRVICSAEP 31 (38)
T ss_dssp EETTEEEEEETTCG
T ss_pred EECCEEEEEeCCCC
Confidence 68899999987 44
No 4
>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...
Probab=5.49 E-value=1.9e+02 Score=19.10 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=9.4
Q ss_pred CCCCeEEEEeecC
Q 009445 521 DLQASVVVYALTS 533 (534)
Q Consensus 521 ~~~~~i~v~~~~~ 533 (534)
||.|.+.|.|+|+
T Consensus 18 rR~grv~VicknP 30 (37)
T 2zjr_4 18 RRHGRVLVICSNV 30 (37)
T ss_dssp ECSSCEEECCSSS
T ss_pred EECCEEEEECCCC
Confidence 5678888887654
No 5
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=5.05 E-value=1.7e+02 Score=17.14 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=5.5
Q ss_pred ccccccccCCC
Q 009445 2 RQRHRAVNTNS 12 (534)
Q Consensus 2 ~~~~~~~~~~~ 12 (534)
|+|++++..++
T Consensus 2 rrrrgsrpsga 12 (26)
T 1g70_B 2 RRRRGSRPSGA 12 (26)
T ss_pred ccccCCCCchH
Confidence 45555554443
No 6
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=3.69 E-value=2.5e+02 Score=24.98 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.1
Q ss_pred ccchHHHHHhhh--cCCeEEEE
Q 009445 490 GSEEILLRDLLK--SYSFREIR 509 (534)
Q Consensus 490 ~~l~~~~~~~l~--~~~y~~~~ 509 (534)
++||..+...|. +|||++..
T Consensus 65 aeLE~~iNavla~~~WG~V~Le 86 (167)
T 2z9e_A 65 DKLQIELNALLALIGWGTVTLE 86 (167)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEe
Confidence 788888887775 69999885
No 7
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=3.64 E-value=7.1e+02 Score=16.27 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=9.0
Q ss_pred hhchhhHHHHHHHH
Q 009445 337 VLPVLPIALMFSGY 350 (534)
Q Consensus 337 i~P~lPll~l~aa~ 350 (534)
++|++|++.++-|.
T Consensus 15 vmPiIPv~f~lLaf 28 (37)
T 3arc_K 15 VLPVIPVLFLALAF 28 (37)
T ss_dssp HGGGHHHHHHHHHH
T ss_pred HhchHHHHHHHHHH
Confidence 46777777665543
No 8
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=3.57 E-value=3e+02 Score=26.58 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=18.2
Q ss_pred ccccCCCCc----CCCCC---hhhhhhhChHHHHh
Q 009445 447 FLDCSPREE----KGILD---ESDRFMKDPVAFTS 474 (534)
Q Consensus 447 fl~c~P~~~----~~y~d---e~d~f~~~P~~~l~ 474 (534)
+=+|.||-. .-|.| ++..||-||.-|.+
T Consensus 125 Y~~C~~PP~L~lLd~yrdDgk~~LK~YTDPSfFfd 159 (279)
T 3p8c_D 125 YDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFD 159 (279)
T ss_dssp HHHSBCCCCGGGGGGGCSSCCCGGGGTCCTTHHHH
T ss_pred HHhcCCCCCCccccccccCChhHHhcCCCcHHHHH
Confidence 457887711 12222 48899999998863
No 9
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=3.53 E-value=2.5e+03 Score=20.15 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=31.3
Q ss_pred CCeEEeCccc--------hHHHHHhhhcCCeEEEEEecCCCCc-cCCCCCCeEEEEeec
Q 009445 483 PSHVVLFGSE--------EILLRDLLKSYSFREIRRFFHAHFK-VDRDLQASVVVYALT 532 (534)
Q Consensus 483 P~~~v~f~~l--------~~~~~~~l~~~~y~~~~~~~~s~~~-~~~~~~~~i~v~~~~ 532 (534)
|.++++ |+. .+.+.+-|++.||.-.++..|+.-- .-.+|.+-++|=.++
T Consensus 112 P~~~vl-ENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~ 169 (333)
T 4h0n_A 112 VDYILM-ENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRN 169 (333)
T ss_dssp CCEEEE-EECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEET
T ss_pred CCEEEE-ecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeC
Confidence 777766 332 2346677788999999999998532 323455555555444
No 10
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initi midwest center for structural genomics, MCSG; 1.88A {Rhodopseudomonas palustris}
Probab=3.06 E-value=5.9e+02 Score=21.58 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHhhhcCCeEEEEEecCCCCccCCC--CCCeEEEE
Q 009445 493 EILLRDLLKSYSFREIRRFFHAHFKVDRD--LQASVVVY 529 (534)
Q Consensus 493 ~~~~~~~l~~~~y~~~~~~~~s~~~~~~~--~~~~i~v~ 529 (534)
|+....||+..||+-..+=|.+..-|-+- ++|+++|+
T Consensus 27 E~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~LVF 65 (134)
T 3fov_A 27 EASAADYLERQGYRILARRFKTRCGEIDLVAQRDALVAF 65 (134)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHCCCEEEeccccCCCCcEEEEEEECCEEEE
Done!