Query 009445
Match_columns 534
No_of_seqs 244 out of 865
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 05:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009445.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009445hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjr41 g.42.1.1 (4:1-37) Ribo 8.9 49 0.0035 20.3 0.8 14 521-534 18-31 (37)
2 d1ibxa_ d.15.2.1 (A:) Caspase- 8.7 25 0.0018 25.8 -0.8 10 55-64 56-65 (81)
3 d1c9fa_ d.15.2.1 (A:) Caspase- 7.5 32 0.0023 25.5 -0.7 11 55-65 59-69 (87)
4 d2j7za1 d.9.1.1 (A:1-67) Strom 5.8 62 0.0045 22.1 0.1 27 423-451 4-32 (67)
5 d1g55a_ c.66.1.26 (A:) DNMT2 { 5.3 6.3E+02 0.046 21.3 7.4 84 445-532 69-169 (343)
6 d1tdha3 g.39.1.8 (A:247-290) E 4.9 97 0.007 19.4 0.6 22 428-449 14-37 (44)
7 d2axtk1 f.23.36.1 (K:10-46) Ph 4.7 2.5E+02 0.018 16.8 2.4 14 337-350 15-28 (37)
8 d2ezwa1 a.31.1.1 (A:12-61) cAM 4.0 1.3E+02 0.0095 19.5 0.8 11 467-477 31-41 (50)
9 d1dcta_ c.66.1.26 (A:) DNA met 3.5 6.8E+02 0.049 20.8 6.0 81 445-531 62-162 (324)
10 d2cura2 g.39.1.3 (A:8-32) Four 3.5 97 0.0071 17.2 -0.2 15 271-285 7-21 (26)
No 1
>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.91 E-value=49 Score=20.33 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=11.2
Q ss_pred CCCCeEEEEeecCC
Q 009445 521 DLQASVVVYALTSE 534 (534)
Q Consensus 521 ~~~~~i~v~~~~~~ 534 (534)
||.|.+.|.|.|++
T Consensus 18 rR~g~v~ViC~npk 31 (37)
T d2zjr41 18 RRHGRVLVICSNVK 31 (37)
T ss_dssp ECSSCEEECCSSST
T ss_pred EeCCEEEEEeCCCC
Confidence 68899999987764
No 2
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=25 Score=25.81 Aligned_cols=10 Identities=0% Similarity=0.222 Sum_probs=8.7
Q ss_pred cccCCchHHH
Q 009445 55 PDEHWQTLEV 64 (534)
Q Consensus 55 pDE~fQslE~ 64 (534)
-|||||++|+
T Consensus 56 ~EeYF~tLp~ 65 (81)
T d1ibxa_ 56 TEDYFPSVPD 65 (81)
T ss_dssp CSSSCSSCCS
T ss_pred eHHHHhcCCC
Confidence 4899999986
No 3
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.46 E-value=32 Score=25.52 Aligned_cols=11 Identities=18% Similarity=0.290 Sum_probs=9.1
Q ss_pred cccCCchHHHH
Q 009445 55 PDEHWQTLEVA 65 (534)
Q Consensus 55 pDE~fQslE~a 65 (534)
-|||||++|+=
T Consensus 59 dEeYF~tLp~n 69 (87)
T d1c9fa_ 59 TDDCFPGLPND 69 (87)
T ss_dssp CTTSCSSCCTT
T ss_pred cHHHHhcCCCC
Confidence 48999999873
No 4
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.76 E-value=62 Score=22.09 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=18.7
Q ss_pred ceeeeccccccCccccccC-CCC-ccccccC
Q 009445 423 SILFLMPCHSTPYYSALHR-NLP-MRFLDCS 451 (534)
Q Consensus 423 sv~fl~pChstPwys~lh~-~i~-~~fl~c~ 451 (534)
|...--||-+|+ |++++ +++ +.||.|+
T Consensus 4 Sl~~Rc~cr~~~--s~vpr~~i~~Lk~l~tp 32 (67)
T d2j7za1 4 SLSYRCPCRFFE--SHVARANVKHLKILNTP 32 (67)
T ss_dssp TTCCSCSCSSCB--SCCCGGGEEEEEEECCT
T ss_pred chhhccchhhhh--ccCchhcCcccccccCC
Confidence 444556888876 77777 666 7788764
No 5
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.29 E-value=6.3e+02 Score=21.32 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=42.9
Q ss_pred ccccccCCCCc--------CCCCChhhhhhhChHHHHhhhcCCCCCCCeEEeCccch--------HHHHHhhhcCCeEEE
Q 009445 445 MRFLDCSPREE--------KGILDESDRFMKDPVAFTSEITKNGSLPSHVVLFGSEE--------ILLRDLLKSYSFREI 508 (534)
Q Consensus 445 ~~fl~c~P~~~--------~~y~de~d~f~~~P~~~l~~~~~~~~~P~~~v~f~~l~--------~~~~~~l~~~~y~~~ 508 (534)
...|...||.+ .+-.|+....+-+-.+++... ...|..+++ |+.. +.+.+-|++.||.-.
T Consensus 69 ~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~---~~kPk~~i~-ENV~~l~~~~~~~~i~~~l~~~GY~v~ 144 (343)
T d1g55a_ 69 FDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRL---QKLPKYILL-ENVKGFEVSSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp CSEEEECCC------------------CHHHHHHHHGGGC---SSCCSEEEE-EEETTGGGSHHHHHHHHHHHHTTEEEE
T ss_pred ccEEEeecccccccccccccccccccccccchhhhhHhhh---cCCCceeee-eccCCcccchhhHHHHhhhhccccccc
Confidence 44566777721 223344333333334444331 124888765 4432 346677888999999
Q ss_pred EEecCCCCccCC-CCCCeEEEEeec
Q 009445 509 RRFFHAHFKVDR-DLQASVVVYALT 532 (534)
Q Consensus 509 ~~~~~s~~~~~~-~~~~~i~v~~~~ 532 (534)
++..|+.-..-+ +|++-++|=.|+
T Consensus 145 ~~vlna~dyGvPQ~R~Rvfivg~r~ 169 (343)
T d1g55a_ 145 EFLLSPTSLGIPNSRLRYFLIAKLQ 169 (343)
T ss_dssp EEEECGGGGTCSCCCCEEEEEEEES
T ss_pred eeeeeccccCCcccceeEEEEEEeC
Confidence 999998644433 344444444343
No 6
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.89 E-value=97 Score=19.43 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.3
Q ss_pred ccccccCccccccC--CCCccccc
Q 009445 428 MPCHSTPYYSALHR--NLPMRFLD 449 (534)
Q Consensus 428 ~pChstPwys~lh~--~i~~~fl~ 449 (534)
+.|++.|-.+.|-. .=.+||-.
T Consensus 14 LqCY~~pgM~sL~D~~GRTIWF~G 37 (44)
T d1tdha3 14 LRCYGMPGMSSLQDRHGRTIWFQG 37 (44)
T ss_dssp CSSTTCTTCEEEECTTSCEEEESS
T ss_pred HHHHcCCchhhhhccCCCEEEecC
Confidence 68999999999843 44488754
No 7
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.68 E-value=2.5e+02 Score=16.75 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=9.2
Q ss_pred hhchhhHHHHHHHH
Q 009445 337 VLPVLPIALMFSGY 350 (534)
Q Consensus 337 i~P~lPll~l~aa~ 350 (534)
++|++|++.++-|.
T Consensus 15 vlPiIPv~f~lLaf 28 (37)
T d2axtk1 15 VLPVIPVLFLALAF 28 (37)
T ss_dssp HGGGHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 46788877665553
No 8
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.02 E-value=1.3e+02 Score=19.49 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=6.3
Q ss_pred hChHHHHhhhc
Q 009445 467 KDPVAFTSEIT 477 (534)
Q Consensus 467 ~~P~~~l~~~~ 477 (534)
|||.+|+.+.|
T Consensus 31 e~P~~FLreyF 41 (50)
T d2ezwa1 31 ERPMAFLREYF 41 (50)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 35666666553
No 9
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}
Probab=3.55 E-value=6.8e+02 Score=20.82 Aligned_cols=81 Identities=9% Similarity=0.006 Sum_probs=44.7
Q ss_pred ccccccCCC--------CcCCCCChhhhhhhChHHHHhhhcCCCCCCCeEEeCccc--------hHH---HHHhhhcCCe
Q 009445 445 MRFLDCSPR--------EEKGILDESDRFMKDPVAFTSEITKNGSLPSHVVLFGSE--------EIL---LRDLLKSYSF 505 (534)
Q Consensus 445 ~~fl~c~P~--------~~~~y~de~d~f~~~P~~~l~~~~~~~~~P~~~v~f~~l--------~~~---~~~~l~~~~y 505 (534)
...+...|| .+.+..||....+-+-.+++++. -|.++++ |+. ... +.+-|.+.||
T Consensus 62 ~dll~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~-----~Pk~~~l-ENV~~~~~~~~~~~~~~~l~~l~~lGY 135 (324)
T d1dcta_ 62 CDGIIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQK-----KPIFFLA-ENVKGMMAQRHNKAVQEFIQEFDNAGY 135 (324)
T ss_dssp CSEEEECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHH-----CCSEEEE-EEEGGGGSGGGHHHHHHHHHHHHHHHE
T ss_pred ccEEeecccccccccccccccccccccchHHHHHHHHHhh-----CCceeec-cccccccccccchhhHHHHhHHhhCCC
Confidence 455666777 22344566433333455566554 2777776 433 122 3344455689
Q ss_pred EEEEEecCCCCccCC-CCCCeEEEEee
Q 009445 506 REIRRFFHAHFKVDR-DLQASVVVYAL 531 (534)
Q Consensus 506 ~~~~~~~~s~~~~~~-~~~~~i~v~~~ 531 (534)
.-.+...|+.-..-+ +|.+-++|=.|
T Consensus 136 ~v~~~vlna~~~GvPQ~R~R~fiv~~r 162 (324)
T d1dcta_ 136 DVHIILLNANDYGVAQDRKRVFYIGFR 162 (324)
T ss_dssp EEEEEEEEGGGGTCSBCCEEEEEEEEE
T ss_pred ccceeeeecccccCchhhceeeEeeec
Confidence 999999988554443 34444444433
No 10
>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.53 E-value=97 Score=17.19 Aligned_cols=15 Identities=40% Similarity=0.873 Sum_probs=10.7
Q ss_pred ccCCCCccccccchH
Q 009445 271 FLSSGGDYYGTHKWH 285 (534)
Q Consensus 271 v~~~~s~~yGt~Pw~ 285 (534)
++..+...|--+|||
T Consensus 7 ~ItsGGvtY~~qPWH 21 (26)
T d2cura2 7 AITSGGITYQDQPWH 21 (26)
T ss_dssp CCCTTCEEETTEEEC
T ss_pred eEecCceeecCCcch
Confidence 345566778888987
Done!