Query 009446
Match_columns 534
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 46136
Date Thu Mar 28 13:13:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00606 rad50 rad50. This fa 97.6 0.33 7.2E-06 57.4 37.5 114 194-335 576-691 (1311)
2 PRK02224 chromosome segregatio 97.3 0.49 1.1E-05 52.8 45.8 98 234-333 356-463 (880)
3 COG1196 Smc Chromosome segrega 97.0 1.1 2.4E-05 52.5 34.5 110 189-302 801-910 (1163)
4 TIGR02168 SMC_prok_B chromosom 96.8 1.2 2.6E-05 49.8 26.9 30 371-400 999-1028(1179)
5 PHA02562 46 endonuclease subun 96.6 0.86 1.9E-05 47.9 23.7 94 187-288 298-391 (562)
6 PF10174 Cast: RIM-binding pro 96.3 3.1 6.6E-05 48.0 36.5 228 95-387 109-337 (775)
7 PRK04863 mukB cell division pr 96.1 4.4 9.6E-05 49.7 28.0 30 190-219 309-338 (1486)
8 TIGR02169 SMC_prok_A chromosom 95.8 4.6 0.0001 45.6 29.7 14 160-173 646-659 (1164)
9 TIGR02168 SMC_prok_B chromosom 95.7 4.6 0.0001 45.2 28.0 32 189-220 180-211 (1179)
10 KOG0161 Myosin class II heavy 95.5 10 0.00022 47.8 38.1 79 203-281 1228-1306(1930)
11 KOG0996 Structural maintenance 95.3 9.7 0.00021 46.1 27.4 154 158-314 750-921 (1293)
12 TIGR02169 SMC_prok_A chromosom 95.1 7.6 0.00017 43.9 31.6 50 30-79 674-723 (1164)
13 PRK02224 chromosome segregatio 94.7 9.2 0.0002 43.0 44.3 41 249-289 524-564 (880)
14 KOG0161 Myosin class II heavy 94.7 17 0.00037 46.0 35.6 57 95-151 1085-1141(1930)
15 PRK11637 AmiB activator; Provi 94.7 1.4 3E-05 46.1 16.0 88 195-282 166-253 (428)
16 KOG4674 Uncharacterized conser 94.3 20 0.00044 45.1 35.1 404 32-517 29-463 (1822)
17 KOG0994 Extracellular matrix g 92.9 29 0.00063 42.6 27.0 219 29-289 1421-1646(1758)
18 COG1196 Smc Chromosome segrega 91.3 38 0.00082 40.4 38.8 38 232-269 672-709 (1163)
19 PF03148 Tektin: Tektin family 90.6 25 0.00055 37.0 19.7 185 98-291 121-346 (384)
20 PRK09039 hypothetical protein; 89.9 7.8 0.00017 40.3 13.8 152 188-347 74-244 (343)
21 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.1 3.4 7.3E-05 37.2 9.2 72 229-303 61-132 (132)
22 PRK11637 AmiB activator; Provi 88.3 37 0.0008 35.8 24.9 53 233-285 60-112 (428)
23 PF10481 CENP-F_N: Cenp-F N-te 88.3 7.8 0.00017 40.6 12.2 138 29-181 17-161 (307)
24 PF00261 Tropomyosin: Tropomyo 88.1 28 0.0006 34.1 17.8 101 202-309 67-167 (237)
25 KOG4643 Uncharacterized coiled 86.5 86 0.0019 38.1 22.8 118 357-502 394-520 (1195)
26 PF11559 ADIP: Afadin- and alp 86.3 23 0.00049 32.1 12.9 54 188-245 31-84 (151)
27 PF00038 Filament: Intermediat 85.1 42 0.00091 33.3 24.6 88 229-316 204-295 (312)
28 PF07888 CALCOCO1: Calcium bin 84.5 78 0.0017 35.9 25.5 88 202-289 143-233 (546)
29 KOG0971 Microtubule-associated 84.4 1E+02 0.0023 37.3 26.9 289 31-387 232-554 (1243)
30 PF10174 Cast: RIM-binding pro 83.8 96 0.0021 36.4 24.1 154 230-392 339-492 (775)
31 cd07596 BAR_SNX The Bin/Amphip 83.5 22 0.00048 32.3 11.6 65 213-285 104-168 (218)
32 PF01576 Myosin_tail_1: Myosin 82.1 0.43 9.2E-06 54.7 0.0 38 29-66 45-82 (859)
33 PF04065 Not3: Not1 N-terminal 81.0 14 0.00031 37.2 10.1 130 160-332 94-230 (233)
34 PRK03918 chromosome segregatio 80.8 1.1E+02 0.0023 34.7 41.7 34 34-67 204-237 (880)
35 TIGR00606 rad50 rad50. This fa 80.1 1.5E+02 0.0032 36.0 38.7 29 289-317 870-898 (1311)
36 KOG0933 Structural maintenance 80.0 1.6E+02 0.0034 36.1 21.0 166 221-398 288-453 (1174)
37 PF05557 MAD: Mitotic checkpoi 78.7 6.5 0.00014 44.1 7.6 64 222-285 359-429 (722)
38 PF08317 Spc7: Spc7 kinetochor 78.2 39 0.00085 34.7 12.5 59 227-285 209-267 (325)
39 KOG0612 Rho-associated, coiled 77.6 1.9E+02 0.0042 35.9 22.3 61 253-313 492-552 (1317)
40 PF09726 Macoilin: Transmembra 77.3 1.5E+02 0.0032 34.4 21.7 39 476-514 618-656 (697)
41 KOG4643 Uncharacterized coiled 76.4 1.4E+02 0.0031 36.4 17.5 169 270-473 524-697 (1195)
42 KOG0250 DNA repair protein RAD 75.4 2E+02 0.0044 35.1 25.1 62 457-518 392-453 (1074)
43 KOG0250 DNA repair protein RAD 73.7 2.3E+02 0.0049 34.8 25.9 21 366-386 366-386 (1074)
44 PRK04778 septation ring format 73.3 1.5E+02 0.0034 32.7 23.1 312 45-391 166-495 (569)
45 KOG0977 Nuclear envelope prote 73.0 1.7E+02 0.0038 33.2 22.1 204 49-304 104-331 (546)
46 PF12128 DUF3584: Protein of u 72.8 2.3E+02 0.0049 34.4 39.3 56 110-165 493-562 (1201)
47 PF01576 Myosin_tail_1: Myosin 71.3 1.3 2.8E-05 50.9 0.0 104 32-149 161-271 (859)
48 PLN03229 acetyl-coenzyme A car 70.3 39 0.00083 39.5 11.0 95 26-120 458-571 (762)
49 PF04156 IncA: IncA protein; 69.9 24 0.00051 32.8 7.8 71 215-285 97-167 (191)
50 PF04912 Dynamitin: Dynamitin 69.8 1.5E+02 0.0033 31.1 15.1 76 290-384 312-387 (388)
51 KOG0977 Nuclear envelope prote 69.3 2.1E+02 0.0045 32.6 23.0 161 77-304 30-190 (546)
52 TIGR03185 DNA_S_dndD DNA sulfu 69.0 2E+02 0.0043 32.2 24.3 26 96-121 226-251 (650)
53 PRK12704 phosphodiesterase; Pr 68.4 34 0.00074 37.8 9.9 53 228-280 83-135 (520)
54 KOG0612 Rho-associated, coiled 67.9 3.2E+02 0.0069 34.2 33.5 83 37-120 451-535 (1317)
55 PF05667 DUF812: Protein of un 67.4 2.1E+02 0.0046 32.6 15.8 116 345-516 445-586 (594)
56 PF12329 TMF_DNA_bd: TATA elem 67.4 39 0.00085 28.4 7.9 52 252-303 2-53 (74)
57 PRK03947 prefoldin subunit alp 67.1 95 0.0021 27.8 10.9 110 273-387 10-137 (140)
58 KOG1853 LIS1-interacting prote 65.9 1.9E+02 0.004 30.7 16.7 129 251-403 55-186 (333)
59 PF06419 COG6: Conserved oligo 64.5 1.4E+02 0.003 33.6 13.7 80 206-285 13-96 (618)
60 PRK10803 tol-pal system protei 61.5 32 0.0007 34.5 7.5 52 462-513 43-94 (263)
61 KOG0964 Structural maintenance 61.2 4E+02 0.0086 32.9 17.3 50 468-524 673-722 (1200)
62 PF04012 PspA_IM30: PspA/IM30 60.4 1.6E+02 0.0035 28.1 14.2 149 190-356 39-188 (221)
63 PF11932 DUF3450: Protein of u 59.3 76 0.0017 31.2 9.5 63 213-275 35-97 (251)
64 smart00787 Spc7 Spc7 kinetocho 59.0 1.7E+02 0.0037 30.6 12.4 71 228-301 205-275 (312)
65 PF04111 APG6: Autophagy prote 58.8 82 0.0018 32.7 10.0 85 194-278 8-94 (314)
66 smart00721 BAR BAR domain. 58.3 1.6E+02 0.0035 27.5 13.5 103 189-317 121-238 (239)
67 PF07889 DUF1664: Protein of u 58.2 1.6E+02 0.0035 27.5 11.2 74 206-289 36-123 (126)
68 KOG0976 Rho/Rac1-interacting s 58.0 4.2E+02 0.0092 32.3 32.4 243 31-314 114-382 (1265)
69 PF12325 TMF_TATA_bd: TATA ele 58.0 1.2E+02 0.0026 27.9 9.9 57 464-520 28-87 (120)
70 PF08614 ATG16: Autophagy prot 57.4 58 0.0012 31.0 8.1 66 232-297 114-179 (194)
71 PF10211 Ax_dynein_light: Axon 56.5 1.8E+02 0.0039 28.2 11.3 106 194-314 65-187 (189)
72 PF13166 AAA_13: AAA domain 56.1 3.2E+02 0.007 30.3 15.1 37 184-220 366-402 (712)
73 cd09238 V_Alix_like_1 Protein- 56.0 1.9E+02 0.0041 30.1 12.1 128 27-197 192-336 (339)
74 PF06008 Laminin_I: Laminin Do 55.9 2.2E+02 0.0047 28.2 24.6 62 456-517 175-236 (264)
75 TIGR03319 YmdA_YtgF conserved 55.0 74 0.0016 35.2 9.5 50 229-278 78-127 (514)
76 PF10805 DUF2730: Protein of u 54.9 64 0.0014 28.5 7.4 19 251-269 38-56 (106)
77 PF07106 TBPIP: Tat binding pr 54.5 91 0.002 28.9 8.7 38 244-281 96-135 (169)
78 PRK03918 chromosome segregatio 54.4 3.7E+02 0.0081 30.5 44.1 12 149-160 422-433 (880)
79 PF10473 CENP-F_leu_zip: Leuci 53.9 64 0.0014 30.5 7.6 56 229-284 61-116 (140)
80 PHA02562 46 endonuclease subun 53.0 3.2E+02 0.0068 29.2 24.0 54 252-305 224-277 (562)
81 PF07888 CALCOCO1: Calcium bin 52.8 4E+02 0.0088 30.5 36.9 48 269-316 283-330 (546)
82 TIGR03185 DNA_S_dndD DNA sulfu 52.6 3.8E+02 0.0082 30.1 26.1 12 299-310 482-493 (650)
83 PF07200 Mod_r: Modifier of ru 52.3 1.2E+02 0.0026 27.4 8.9 71 196-267 18-88 (150)
84 PF13514 AAA_27: AAA domain 52.2 4.9E+02 0.011 31.2 42.2 109 170-285 593-710 (1111)
85 TIGR02680 conserved hypothetic 52.1 5.5E+02 0.012 31.8 22.4 26 264-289 553-578 (1353)
86 KOG0963 Transcription factor/C 51.1 4.6E+02 0.01 30.6 19.9 62 221-282 206-269 (629)
87 PRK12704 phosphodiesterase; Pr 50.8 2.2E+02 0.0047 31.8 12.2 24 137-160 126-149 (520)
88 TIGR03319 YmdA_YtgF conserved 50.7 2.2E+02 0.0047 31.7 12.2 11 237-247 253-263 (514)
89 PF08614 ATG16: Autophagy prot 50.4 70 0.0015 30.5 7.5 55 245-299 99-153 (194)
90 PRK14140 heat shock protein Gr 50.1 1.8E+02 0.0038 28.8 10.2 13 342-354 113-125 (191)
91 KOG0982 Centrosomal protein Nu 50.0 1E+02 0.0023 34.4 9.5 75 247-321 296-370 (502)
92 PRK04406 hypothetical protein; 49.9 1.1E+02 0.0023 26.0 7.7 53 465-517 3-55 (75)
93 PRK09039 hypothetical protein; 48.7 2.1E+02 0.0045 30.1 11.1 58 229-286 139-197 (343)
94 PF06637 PV-1: PV-1 protein (P 48.4 4.3E+02 0.0093 29.5 13.9 68 68-166 331-398 (442)
95 PF03915 AIP3: Actin interacti 47.8 1.6E+02 0.0035 32.3 10.5 137 133-269 90-267 (424)
96 KOG0018 Structural maintenance 46.7 70 0.0015 38.9 8.1 73 228-300 677-749 (1141)
97 COG2433 Uncharacterized conser 45.9 61 0.0013 37.3 7.2 62 228-293 451-512 (652)
98 PF15188 CCDC-167: Coiled-coil 45.7 43 0.00094 29.5 4.8 58 225-289 3-63 (85)
99 PF06810 Phage_GP20: Phage min 45.6 1.6E+02 0.0034 27.9 8.8 52 238-289 17-71 (155)
100 PRK14141 heat shock protein Gr 45.6 1.6E+02 0.0035 29.5 9.3 77 261-356 51-127 (209)
101 PF06005 DUF904: Protein of un 44.6 2E+02 0.0042 24.4 8.5 65 250-317 6-70 (72)
102 PF10186 Atg14: UV radiation r 44.1 2.3E+02 0.005 27.3 10.0 35 230-264 73-107 (302)
103 PF05266 DUF724: Protein of un 43.5 3.3E+02 0.0071 26.7 13.0 105 172-277 23-146 (190)
104 PF00261 Tropomyosin: Tropomyo 43.5 3.3E+02 0.0072 26.8 24.6 154 236-397 3-159 (237)
105 PRK00106 hypothetical protein; 43.4 3.9E+02 0.0084 30.3 12.8 24 137-160 141-164 (535)
106 KOG0018 Structural maintenance 43.0 7.6E+02 0.016 30.8 19.2 126 231-393 224-352 (1141)
107 PF08317 Spc7: Spc7 kinetochor 42.8 4E+02 0.0087 27.5 17.4 50 465-514 215-264 (325)
108 PF05010 TACC: Transforming ac 42.4 3.7E+02 0.0079 27.0 16.5 115 144-282 88-202 (207)
109 PF05701 WEMBL: Weak chloropla 41.7 5.3E+02 0.011 28.6 39.9 78 10-87 11-91 (522)
110 PF11932 DUF3450: Protein of u 40.6 1.9E+02 0.0041 28.5 8.9 59 462-520 45-103 (251)
111 KOG3758 Uncharacterized conser 40.2 4.1E+02 0.0089 31.0 12.4 159 207-400 47-232 (655)
112 PF04859 DUF641: Plant protein 40.2 73 0.0016 29.9 5.7 50 229-285 75-124 (131)
113 PF05278 PEARLI-4: Arabidopsis 39.7 1.2E+02 0.0026 31.7 7.7 43 261-303 213-255 (269)
114 PF05384 DegS: Sensor protein 39.7 2E+02 0.0044 27.7 8.7 52 468-522 11-62 (159)
115 PF00038 Filament: Intermediat 38.5 4.1E+02 0.0089 26.4 25.4 56 261-316 95-151 (312)
116 PF05529 Bap31: B-cell recepto 38.4 1.7E+02 0.0036 27.7 7.9 74 180-267 107-180 (192)
117 PRK14161 heat shock protein Gr 38.1 3.9E+02 0.0085 26.1 10.9 37 253-289 17-53 (178)
118 PF10234 Cluap1: Clusterin-ass 37.1 1.9E+02 0.0042 30.0 8.7 59 456-514 159-217 (267)
119 COG1579 Zn-ribbon protein, pos 37.0 2.9E+02 0.0063 28.4 9.8 86 228-313 32-140 (239)
120 COG4026 Uncharacterized protei 36.9 1.6E+02 0.0035 30.7 8.0 59 253-314 144-205 (290)
121 smart00502 BBC B-Box C-termina 36.6 2.5E+02 0.0053 23.3 7.9 58 465-522 6-64 (127)
122 PRK10698 phage shock protein P 36.5 4.4E+02 0.0095 26.1 12.6 88 230-318 73-161 (222)
123 COG3883 Uncharacterized protei 36.3 5.3E+02 0.011 27.0 15.5 68 230-300 41-108 (265)
124 PF10186 Atg14: UV radiation r 35.9 4.1E+02 0.0089 25.7 15.4 59 140-198 138-212 (302)
125 PF04102 SlyX: SlyX; InterPro 35.0 2E+02 0.0044 23.6 6.9 45 474-518 5-49 (69)
126 TIGR01837 PHA_granule_1 poly(h 34.8 3.5E+02 0.0075 24.5 9.5 99 181-289 13-116 (118)
127 PF05008 V-SNARE: Vesicle tran 34.7 2.5E+02 0.0053 22.7 7.7 70 239-310 4-74 (79)
128 PF08826 DMPK_coil: DMPK coile 34.7 2.3E+02 0.005 23.6 7.1 52 230-281 4-58 (61)
129 PRK11546 zraP zinc resistance 34.2 88 0.0019 29.8 5.3 50 234-283 61-110 (143)
130 PF07246 Phlebovirus_NSM: Phle 34.1 2.5E+02 0.0055 29.4 8.9 77 212-302 166-242 (264)
131 PRK02793 phi X174 lysis protei 34.0 1.7E+02 0.0037 24.5 6.5 49 232-280 6-54 (72)
132 PF08172 CASP_C: CASP C termin 33.9 2.4E+02 0.0051 28.8 8.6 45 272-316 89-133 (248)
133 PRK02119 hypothetical protein; 33.7 1.7E+02 0.0036 24.7 6.4 9 261-269 36-44 (73)
134 COG2433 Uncharacterized conser 33.2 2E+02 0.0044 33.3 8.7 38 270-307 475-512 (652)
135 PF10224 DUF2205: Predicted co 32.9 1.9E+02 0.0041 25.2 6.7 44 470-513 20-63 (80)
136 KOG1003 Actin filament-coating 32.8 5.5E+02 0.012 26.2 16.0 98 191-288 21-121 (205)
137 KOG4674 Uncharacterized conser 32.8 1.3E+03 0.028 30.4 41.7 267 213-518 395-713 (1822)
138 PF15066 CAGE1: Cancer-associa 32.7 1.5E+02 0.0033 33.5 7.5 60 462-525 386-450 (527)
139 PF10805 DUF2730: Protein of u 32.7 2.1E+02 0.0046 25.3 7.2 35 264-298 67-101 (106)
140 PF14257 DUF4349: Domain of un 32.5 1.4E+02 0.0031 29.3 6.7 63 465-532 138-201 (262)
141 KOG1962 B-cell receptor-associ 32.2 3.7E+02 0.008 27.4 9.5 38 181-218 104-143 (216)
142 PF14817 HAUS5: HAUS augmin-li 32.1 3.2E+02 0.0069 31.6 10.1 85 229-313 81-165 (632)
143 PF10303 DUF2408: Protein of u 32.0 2.8E+02 0.0061 25.7 8.1 96 97-206 4-99 (134)
144 PF12329 TMF_DNA_bd: TATA elem 31.9 2.5E+02 0.0053 23.7 7.1 29 261-289 39-67 (74)
145 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.6 3.2E+02 0.007 24.7 8.3 64 462-525 62-129 (132)
146 PRK00106 hypothetical protein; 31.0 2.9E+02 0.0062 31.3 9.4 52 229-280 99-150 (535)
147 KOG0804 Cytoplasmic Zn-finger 31.0 5.7E+02 0.012 29.0 11.4 83 234-316 347-433 (493)
148 KOG3433 Protein involved in me 30.0 4.7E+02 0.01 26.6 9.7 75 231-305 85-159 (203)
149 PF05622 HOOK: HOOK protein; 29.7 18 0.00038 40.8 0.0 51 228-285 240-290 (713)
150 PF05262 Borrelia_P83: Borreli 29.7 8.4E+02 0.018 27.5 12.6 38 50-87 216-253 (489)
151 PRK13729 conjugal transfer pil 29.7 1.6E+02 0.0035 33.0 7.1 50 467-516 70-119 (475)
152 PF14915 CCDC144C: CCDC144C pr 29.6 4.3E+02 0.0094 28.3 9.9 83 229-311 160-249 (305)
153 KOG0614 cGMP-dependent protein 29.3 95 0.0021 35.8 5.4 48 229-276 26-73 (732)
154 PRK04325 hypothetical protein; 29.1 2.4E+02 0.0051 23.8 6.5 37 244-280 19-55 (74)
155 KOG4603 TBP-1 interacting prot 28.0 4.6E+02 0.01 26.5 9.2 56 266-321 120-187 (201)
156 PF09304 Cortex-I_coil: Cortex 28.0 2.8E+02 0.0061 25.6 7.2 74 45-125 3-76 (107)
157 KOG0244 Kinesin-like protein [ 27.9 2.6E+02 0.0056 33.8 8.7 118 199-319 488-605 (913)
158 PF15619 Lebercilin: Ciliary p 27.1 2E+02 0.0043 28.2 6.6 45 463-507 9-53 (194)
159 PF01166 TSC22: TSC-22/dip/bun 26.9 56 0.0012 27.4 2.4 29 269-297 14-42 (59)
160 PF10473 CENP-F_leu_zip: Leuci 26.9 5.6E+02 0.012 24.4 14.4 78 238-315 14-91 (140)
161 PRK09413 IS2 repressor TnpA; R 26.7 1.3E+02 0.0028 26.6 4.8 31 467-497 72-102 (121)
162 cd09234 V_HD-PTP_like Protein- 26.6 7.4E+02 0.016 25.7 11.9 145 27-198 188-335 (337)
163 PF10779 XhlA: Haemolysin XhlA 26.6 3E+02 0.0065 22.6 6.6 47 469-515 2-48 (71)
164 COG3883 Uncharacterized protei 26.3 3.4E+02 0.0074 28.4 8.4 52 464-515 43-94 (265)
165 PF10146 zf-C4H2: Zinc finger- 26.2 6.9E+02 0.015 25.3 10.3 76 239-314 16-98 (230)
166 PF07106 TBPIP: Tat binding pr 25.9 2.7E+02 0.0059 25.8 7.0 61 229-289 74-136 (169)
167 PRK05431 seryl-tRNA synthetase 25.5 2.4E+02 0.0052 30.4 7.4 81 210-290 10-94 (425)
168 PF07544 Med9: RNA polymerase 25.5 1.9E+02 0.0041 24.6 5.4 55 227-281 21-78 (83)
169 PF14193 DUF4315: Domain of un 25.4 1.3E+02 0.0028 26.3 4.5 53 264-316 3-60 (83)
170 PF13863 DUF4200: Domain of un 25.2 4.6E+02 0.0099 22.8 9.6 76 43-118 31-106 (126)
171 TIGR01010 BexC_CtrB_KpsE polys 24.9 5.3E+02 0.011 26.5 9.5 107 183-291 142-264 (362)
172 PF04102 SlyX: SlyX; InterPro 24.7 2.8E+02 0.006 22.9 6.1 38 244-281 14-51 (69)
173 cd00890 Prefoldin Prefoldin is 24.7 1.7E+02 0.0037 25.1 5.2 61 275-336 5-65 (129)
174 PF09325 Vps5: Vps5 C terminal 24.7 6E+02 0.013 24.0 16.4 51 269-319 24-74 (236)
175 PF12072 DUF3552: Domain of un 24.2 6.6E+02 0.014 24.3 11.9 53 97-160 93-145 (201)
176 TIGR00634 recN DNA repair prot 24.0 1E+03 0.022 26.4 19.0 79 237-319 157-241 (563)
177 PF07795 DUF1635: Protein of u 23.9 2E+02 0.0043 29.2 6.1 112 60-193 17-129 (214)
178 PRK10884 SH3 domain-containing 23.8 3E+02 0.0065 27.3 7.2 25 193-217 91-115 (206)
179 PF10046 BLOC1_2: Biogenesis o 23.7 3.2E+02 0.0069 23.8 6.6 27 263-289 67-93 (99)
180 PF12126 DUF3583: Protein of u 23.6 3.9E+02 0.0083 28.8 8.2 104 205-321 52-156 (324)
181 CHL00118 atpG ATP synthase CF0 23.5 5.9E+02 0.013 23.5 13.0 48 22-69 45-92 (156)
182 PRK00295 hypothetical protein; 23.5 4E+02 0.0087 22.1 6.8 38 244-281 15-52 (68)
183 PF15070 GOLGA2L5: Putative go 23.2 1.2E+03 0.026 27.0 23.0 240 195-509 4-273 (617)
184 TIGR01069 mutS2 MutS2 family p 23.2 5.7E+02 0.012 30.0 10.2 38 188-225 497-534 (771)
185 cd08915 V_Alix_like Protein-in 23.1 8.3E+02 0.018 25.1 11.4 27 27-53 190-216 (342)
186 PF10046 BLOC1_2: Biogenesis o 23.0 2.7E+02 0.0058 24.3 6.0 18 298-315 74-91 (99)
187 PF12325 TMF_TATA_bd: TATA ele 23.0 5E+02 0.011 24.0 8.0 14 341-354 100-113 (120)
188 PF08946 Osmo_CC: Osmosensory 22.7 91 0.002 25.1 2.8 26 273-298 16-41 (46)
189 PRK01156 chromosome segregatio 22.6 1.2E+03 0.027 26.9 43.7 10 137-146 425-434 (895)
190 PF14197 Cep57_CLD_2: Centroso 22.5 4E+02 0.0086 22.4 6.6 47 461-507 21-67 (69)
191 COG4026 Uncharacterized protei 22.4 3.8E+02 0.0082 28.1 7.7 131 69-218 132-265 (290)
192 KOG0999 Microtubule-associated 22.3 1.3E+03 0.029 27.2 17.1 71 233-309 7-83 (772)
193 PRK00736 hypothetical protein; 22.2 3.8E+02 0.0082 22.3 6.4 32 249-280 20-51 (68)
194 PF03148 Tektin: Tektin family 21.9 9.8E+02 0.021 25.5 22.6 131 160-293 171-309 (384)
195 PF07798 DUF1640: Protein of u 21.8 3E+02 0.0065 26.0 6.6 17 228-244 52-68 (177)
196 COG4942 Membrane-bound metallo 21.7 1.1E+03 0.025 26.2 20.4 74 228-301 46-123 (420)
197 PF04111 APG6: Autophagy prote 21.6 4.8E+02 0.01 27.2 8.5 32 287-319 117-148 (314)
198 PF06156 DUF972: Protein of un 21.6 4E+02 0.0086 24.1 6.9 48 453-500 2-56 (107)
199 PF11101 DUF2884: Protein of u 21.1 8.3E+02 0.018 24.3 10.8 128 185-314 68-220 (229)
200 PF12072 DUF3552: Domain of un 21.1 7.6E+02 0.016 23.9 12.7 74 241-317 71-144 (201)
201 PF05911 DUF869: Plant protein 21.0 4.8E+02 0.01 30.9 9.1 107 194-300 40-165 (769)
202 PF11570 E2R135: Coiled-coil r 20.3 3.9E+02 0.0084 25.7 6.8 59 17-75 62-122 (136)
203 PF06785 UPF0242: Uncharacteri 20.3 8.4E+02 0.018 27.0 10.0 118 181-313 86-218 (401)
204 PRK04406 hypothetical protein; 20.2 4.1E+02 0.0089 22.6 6.4 21 294-314 33-53 (75)
205 KOG2669 Regulator of nuclear m 20.2 3.3E+02 0.0071 29.3 7.0 136 170-309 140-291 (325)
206 PF05600 DUF773: Protein of un 20.0 8.9E+02 0.019 27.1 10.6 132 264-404 360-499 (507)
No 1
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.56 E-value=0.33 Score=57.41 Aligned_cols=114 Identities=12% Similarity=0.191 Sum_probs=78.3
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 009446 194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE 273 (534)
Q Consensus 194 neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~ 273 (534)
...+..+-+.++.+.+..+.+.... .++|..++.++.++..+...++...+.+.+ +.
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el-----------~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~~----------- 632 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKEL-----------ASLEQNKNHINNELESKEEQLSSYEDKLFD-VC----------- 632 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-----------
Confidence 6667777777777777777776554 678888888888887777666666555551 11
Q ss_pred HHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhh--cCCCccccccccccCCCcc
Q 009446 274 LRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV--DDGNLDQSGLSESLFLPQE 335 (534)
Q Consensus 274 lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~v--d~~k~~~s~lsEs~f~~~e 335 (534)
-+..|+..|..++..-......++.+..+...+...+... ..++. -.||..-|.+.+
T Consensus 633 ---~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~--C~LC~R~f~~ee 691 (1311)
T TIGR00606 633 ---GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSC--CPVCQRVFQTEA 691 (1311)
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCCCCCChh
Confidence 2345555665566666666777777788888888888888 55555 677888887544
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=97.27 E-value=0.49 Score=52.81 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=50.3
Q ss_pred HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH-------HHHHHHhhchhhhchhHHHHhhhHHHHH
Q 009446 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV-------NEYEDKLKNLESHRPLLVDQLNYVSKIH 306 (534)
Q Consensus 234 a~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V-------~e~E~klk~~e~~r~lL~dql~~v~~ih 306 (534)
..+..++.+++...+.++.+...+...+..+..++.+++.++..+ ..|+..+..++....-|.+.++.+....
T Consensus 356 ~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~ 435 (880)
T PRK02224 356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL 435 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555555555555555554444444 3455555555555555666666666666
Q ss_pred HHHHHHHHhhc---CCCccccccccccCCC
Q 009446 307 DQVDDIIKIVD---DGNLDQSGLSESLFLP 333 (534)
Q Consensus 307 d~L~~vi~~vd---~~k~~~s~lsEs~f~~ 333 (534)
..+...++.+. .+.. -.+|.+.|-+
T Consensus 436 ~~~~~~l~~~~~~l~~~~--Cp~C~r~~~~ 463 (880)
T PRK02224 436 RTARERVEEAEALLEAGK--CPECGQPVEG 463 (880)
T ss_pred HHHHHHHHHHHHHHhccc--CCCCCCcCCC
Confidence 66666666655 2332 3455555543
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.03 E-value=1.1 Score=52.54 Aligned_cols=110 Identities=23% Similarity=0.377 Sum_probs=77.7
Q ss_pred hhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 009446 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268 (534)
Q Consensus 189 v~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele 268 (534)
-+.+++.-+..+-.++......++.+..+|++-.- +...+++.+..++.++..-....+.+...+......+..++
T Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 876 (1163)
T COG1196 801 ELEEAERRLDALERELESLEQRRERLEQEIEELEE----EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666777766666666666665443 44578888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhH
Q 009446 269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (534)
Q Consensus 269 rE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v 302 (534)
..+..+++....++..++.++....-+-.++..+
T Consensus 877 ~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 877 DELKELEEEKEELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777775555555444444
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.75 E-value=1.2 Score=49.77 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=18.0
Q ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 009446 371 SREVKSLNEAVGQLVKEKEHIVSLLRSALS 400 (534)
Q Consensus 371 ~kE~k~Le~sV~~L~kEnedI~sLLRsALs 400 (534)
.....+|......|.+.-..|....+.-..
T Consensus 999 ~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~ 1028 (1179)
T TIGR02168 999 KERYDFLTAQKEDLTEAKETLEEAIEEIDR 1028 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666555543
No 5
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.63 E-value=0.86 Score=47.94 Aligned_cols=94 Identities=12% Similarity=0.242 Sum_probs=54.8
Q ss_pred HHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 009446 187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE 266 (534)
Q Consensus 187 ygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~e 266 (534)
.+.+...++...++=.|++.......+..+.++++ .++...++.++..+..+.+.++.+.+....-+.+|..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~--------~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~ 369 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEF--------NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE 369 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677788888888888888888777777643 3445556556655555555555554444444455554
Q ss_pred HHHhHHHHHHHHHHHHHHhhch
Q 009446 267 IESQGLELRQLVNEYEDKLKNL 288 (534)
Q Consensus 267 lerE~~~lKe~V~e~E~klk~~ 288 (534)
++.....+-+.+..++.++.++
T Consensus 370 l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 370 LQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHhhhhchHHHHHHHHHHHHHH
Confidence 4444444434444444444333
No 6
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.30 E-value=3.1 Score=48.01 Aligned_cols=228 Identities=17% Similarity=0.220 Sum_probs=139.9
Q ss_pred ccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 009446 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (534)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP 174 (534)
.|+.-+.+..++.-+|..++.++..-+.=+..-.+++-.-..++....+|..-.-|| -..|+|
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L-----------------~~~g~~ 171 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML-----------------QSKGLS 171 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhcCCc
Confidence 444445555555566666665555433322222233333334445555555555555 123444
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHH
Q 009446 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE 254 (534)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~ 254 (534)
. +-.+=..++.|-|-..+-.+-.|-..+....+.++.+|++|.+|+ +. ...++.-+.+.
T Consensus 172 ~--~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~-~~------------------~~~~a~t~alq 230 (775)
T PF10174_consen 172 A--EAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL-QM------------------ERDDAETEALQ 230 (775)
T ss_pred c--cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hc------------------CCCchhHHHHH
Confidence 3 111223456677778888888898899999999999999887765 32 23344555788
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCc
Q 009446 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQ 334 (534)
Q Consensus 255 k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~ 334 (534)
+-+..||.+|+.+|+-+..+.+-|..|...+.....-|..+..++..+.+-...+-+=++.+.
T Consensus 231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~----------------- 293 (775)
T PF10174_consen 231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLK----------------- 293 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHH-----------------
Confidence 889999999999999888888888777666655556788888888777666655543333322
Q ss_pred ccchhHHHHHhHhhhh-hHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 009446 335 ETDMEENIRASLAGME-SIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE 387 (534)
Q Consensus 335 etD~Ee~lK~sl~~~k-sI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kE 387 (534)
.-|.... -|+.+.+...++.+...++ +.++-.|-.++...-.+
T Consensus 294 ---------~eL~rk~~E~~~~qt~l~~~~~~~~d~-r~hi~~lkesl~~ke~~ 337 (775)
T PF10174_consen 294 ---------LELSRKKSELEALQTRLETLEEQDSDM-RQHIEVLKESLRAKEQE 337 (775)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 1233333 4666677777777777777 55555555555444333
No 7
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.05 E-value=4.4 Score=49.67 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=16.8
Q ss_pred hhchhHHHHHHHhhhhhhhhhhhHHHHHhh
Q 009446 190 IKRTNEIVEELVGQIDATAKSRNDVREQME 219 (534)
Q Consensus 190 ~KR~neiveel~~Q~da~~k~rn~aReqme 219 (534)
+.|.++|+.++-.++..-.+.+..|+....
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666555555555433
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.78 E-value=4.6 Score=45.61 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=6.3
Q ss_pred cccCCCCCCCCCCC
Q 009446 160 GKVSNFKNFSAGGL 173 (534)
Q Consensus 160 ~k~s~~k~f~~~~l 173 (534)
|.+-+..|+-.||-
T Consensus 646 G~~~~~~G~~tgG~ 659 (1164)
T TIGR02169 646 GELFEKSGAMTGGS 659 (1164)
T ss_pred ceeEcCCcCccCCC
Confidence 44433344445554
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.72 E-value=4.6 Score=45.22 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=23.4
Q ss_pred hhhchhHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 009446 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQ 220 (534)
Q Consensus 189 v~KR~neiveel~~Q~da~~k~rn~aReqmeq 220 (534)
-+.|.++|+.++-.|+..-.+....|+...+.
T Consensus 180 nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~ 211 (1179)
T TIGR02168 180 KLERTRENLDRLEDILNELERQLKSLERQAEK 211 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999988888776666666655443
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.51 E-value=10 Score=47.81 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=48.4
Q ss_pred hhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446 203 QIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 203 Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~ 281 (534)
|++....+...-+...|-++++.--.++.++..++-|=.-..+..++...|.+++.+.+.+++.+.+....+...++++
T Consensus 1228 ~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~ 1306 (1930)
T KOG0161|consen 1228 QLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL 1306 (1930)
T ss_pred HHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445555556666666666666665555555667777788888888888888887777444444444433
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=9.7 Score=46.06 Aligned_cols=154 Identities=22% Similarity=0.279 Sum_probs=95.9
Q ss_pred hhcccCCCCCCCCCC-CCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHh
Q 009446 158 ISGKVSNFKNFSAGG-LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI 236 (534)
Q Consensus 158 is~k~s~~k~f~~~~-lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~i 236 (534)
.||..|+--+-..+| .-++.--||..+.+---+-|+-.-+.+..+|+-..--.=++..-+...|--+.-+..+.|++++
T Consensus 750 ~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~ 829 (1293)
T KOG0996|consen 750 KSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASV 829 (1293)
T ss_pred ccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHH
Confidence 355555443332333 4444446677766766666666666666666655544445555555556566666677777777
Q ss_pred hhchHHHhhhhhhHHHHHHH----------HHHhHHHHHHHHHhHHHH-----H-HHHHHHHHHhhchhhhchhHHH-Hh
Q 009446 237 SGLREEVAKKSSFIENLEKS----------LIEKDEKVAEIESQGLEL-----R-QLVNEYEDKLKNLESHRPLLVD-QL 299 (534)
Q Consensus 237 s~lr~eva~k~s~~e~l~k~----------~~eke~ki~elerE~~~l-----K-e~V~e~E~klk~~e~~r~lL~d-ql 299 (534)
.++-..++--.+-+-.+++. +.++.+.|+++++|++++ | ++|.+|-.++ +.-.+.++. |=
T Consensus 830 k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i---~~i~~e~~q~qk 906 (1293)
T KOG0996|consen 830 KRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKI---DEIGGEKVQAQK 906 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHhhchhhHHhH
Confidence 66666444444444444433 345577799999999999 5 8888888888 544554444 77
Q ss_pred hhHHHHHHHHHHHHH
Q 009446 300 NYVSKIHDQVDDIIK 314 (534)
Q Consensus 300 ~~v~~ihd~L~~vi~ 314 (534)
..+.+++++|..+-.
T Consensus 907 ~kv~~~~~~~~~l~~ 921 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEA 921 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888877743
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.11 E-value=7.6 Score=43.93 Aligned_cols=50 Identities=6% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHH
Q 009446 30 ERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTR 79 (534)
Q Consensus 30 ~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r 79 (534)
..+..+..+++.-...-...+.....++..+..+..-...+-+....+..
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 723 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK 723 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444444555555555555555544444444444333
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=94.74 E-value=9.2 Score=43.02 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 249 ~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
.+++....+.+...++.++..++..++..+.++....+.++
T Consensus 524 ~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 564 (880)
T PRK02224 524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666677777777777777777766665553333
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.73 E-value=17 Score=46.04 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=33.0
Q ss_pred ccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhh
Q 009446 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML 151 (534)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL 151 (534)
.+..+..+.+..++..+.+.++.++.-.=+-.|.+...+.|++..|..+++.-.+=|
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666777777777666655444445555556666655555555444333
No 15
>PRK11637 AmiB activator; Provisional
Probab=94.72 E-value=1.4 Score=46.06 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=51.4
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHH
Q 009446 195 EIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLEL 274 (534)
Q Consensus 195 eiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~l 274 (534)
..--+++.++..+.+.-...+.+++..-=+..-...++++....|....+.+...+..|++.....+..+.+++++...|
T Consensus 166 ~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 166 QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555444444444444444333444445566666666666667777777777777777777777777666666
Q ss_pred HHHHHHHH
Q 009446 275 RQLVNEYE 282 (534)
Q Consensus 275 Ke~V~e~E 282 (534)
...+.++.
T Consensus 246 ~~~I~~l~ 253 (428)
T PRK11637 246 RDSIARAE 253 (428)
T ss_pred HHHHHHHH
Confidence 66665543
No 16
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.30 E-value=20 Score=45.12 Aligned_cols=404 Identities=17% Similarity=0.199 Sum_probs=183.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHH-------HHHHHhhhccc---
Q 009446 32 FREVLAELN----RERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALR-------EKEEILRSNDK--- 97 (534)
Q Consensus 32 ~~~l~ael~----~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r-------~ke~~~~~~~~--- 97 (534)
|.+-.++++ +--..+-.+|..++++..+..+|+.--.+...+++.+.-......- ++.+....-+.
T Consensus 29 l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~ 108 (1822)
T KOG4674|consen 29 LPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKL 108 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 344455554 3335566788889999999999999888888877766655554221 22333333333
Q ss_pred ----hhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCC
Q 009446 98 ----LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGL 173 (534)
Q Consensus 98 ----~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~l 173 (534)
++.+-.+++++++.+...+...- .-.+++.+++.....-|.+..-+++-.-.
T Consensus 109 ~~~~l~~~~se~~~qkr~l~~~le~~~--------------~ele~l~~~n~~l~~ql~ss~~~~~e~e~---------- 164 (1822)
T KOG4674|consen 109 ENSQLRRAKSELQEQKRQLMELLERQK--------------AELEALESENKDLNDQLKSSTKTLSELEA---------- 164 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 33333344444444433333321 12455666666655555555444331110
Q ss_pred CCCccccCchhHHHHhhhchhHHHHH---HHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhH
Q 009446 174 PRSQKYTGLPAVVYGVIKRTNEIVEE---LVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFI 250 (534)
Q Consensus 174 P~SqKYtGl~avaygv~KR~neivee---l~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~ 250 (534)
+-.+.++-.-.+=.+-+-.+-+ |.+++.--.+.-.-.-+...--.-+--|+|++|+.-+++++.+++.=.+-.
T Consensus 165 ----r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~ 240 (1822)
T KOG4674|consen 165 ----RLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN 240 (1822)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111111110 111111111111111111111111223455555555555555554444444
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCcccccccccc
Q 009446 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESL 330 (534)
Q Consensus 251 e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~ 330 (534)
..|.....+-..+|-.+-.++..+++.-..++.++ .-=-..+..|.++.+.-
T Consensus 241 ~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf--------------~~El~~q~kL~eL~ks~-------------- 292 (1822)
T KOG4674|consen 241 KSLKQQNEELSKKIESLNLELSKLKDTAESSEEKF--------------EKELSTQKKLNELWKSK-------------- 292 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHH--------------
Confidence 44443333333333333334444444444433333 00011122222222211
Q ss_pred CCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHH-------HHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhc
Q 009446 331 FLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDL-------VQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRM 403 (534)
Q Consensus 331 f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~-------~E~k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKe 403 (534)
-.|.......+..+...+.-|...+..-...+ ....++....++..|.+|..+-.|-+..+..++..-+
T Consensus 293 ----~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~ 368 (1822)
T KOG4674|consen 293 ----LEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSM 368 (1822)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccch
Confidence 11333334445555555555554554444333 3334455557778888888888888888887555322
Q ss_pred ccCCCCchhhHHHHhhhhhhhhcccchhhcccCCCCCCCCccccCCCcchhHHHHhHHHHHHHHHHHH---HHHHHHHHH
Q 009446 404 SVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKAS---QLEIVELRH 480 (534)
Q Consensus 404 a~E~~qkrseLLQiAE~GLqevGfgF~~~~i~Gdg~~e~S~d~~~~~s~eEdEV~SLAsalEniMK~s---qlEI~eLrh 480 (534)
- ++..-.|.++ .+-|+-|. ++. +.-..-.+++-++-.-+++.-..+ --++.++-+
T Consensus 369 ~-------s~~~a~~s~~-~~~~~sLt--k~y------------s~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p 426 (1822)
T KOG4674|consen 369 V-------SEKAALASSL-IRPGSSLT--KLY------------SKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAP 426 (1822)
T ss_pred h-------hhHHHHHHhh-cccchhHH--HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 1111112221 22222221 111 001112223333333333322222 234555566
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 009446 481 SVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKE 517 (534)
Q Consensus 481 sLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEERE 517 (534)
-|.+.|++..|.+.-...+..++.....-|..+|...
T Consensus 427 ~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~ 463 (1822)
T KOG4674|consen 427 ILKEQRSELERMQETKAELSEELDFSNQKIQKLEKEL 463 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888877777777543
No 17
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.93 E-value=29 Score=42.58 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhh
Q 009446 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA 108 (534)
Q Consensus 29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~ 108 (534)
..+|+.-+||.++=.+.-..|..+.+|.+.+-.|. +-+=.-..-|-+++. +-
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~-------~~~a~as~~q~~~s~---------------------~e 1472 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA-------LEQANASRSQMEESN---------------------RE 1472 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHH---------------------HH
Confidence 45677777777777777777777777766554332 222111111112211 12
Q ss_pred HHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCc----cccCchh
Q 009446 109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ----KYTGLPA 184 (534)
Q Consensus 109 ~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~Sq----KYtGl~a 184 (534)
-+.+.+|+-+.+-+-+-+-+++.+++. .-|..+|-....-+-.=..+|--.|+..+|. -+=|-++- .-.-|++
T Consensus 1473 l~~Li~~v~~Flt~~~adp~si~~vA~--~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nV-d~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAE--EVLALELPLTPEQIQQLTGEIQERVASLPNV-DAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHHHhcccH-HHHHHhhhhhHHHHHHHHH
Confidence 223445555666665555666666554 3466677666666655566666666665553 11132220 1123555
Q ss_pred HHHHhhhchhHH---HHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhH
Q 009446 185 VVYGVIKRTNEI---VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKD 261 (534)
Q Consensus 185 vaygv~KR~nei---veel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke 261 (534)
.|--.=|++.++ +|+++.-+..+.++-+.|..-|.|-+ +.|..-++-+++--.+....|+-+.---
T Consensus 1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~-----------~~~~~a~~~l~kv~~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD-----------RDIRLAQQLLAKVQEETAAAEKLATSAT 1618 (1758)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444433 45555555666666677766666543 3344444444554445555555566666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 262 EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 262 ~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
..+.+|++-|+.||-+...-.+.+++++
T Consensus 1619 q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7778888877777777655444444444
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.33 E-value=38 Score=40.36 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=17.6
Q ss_pred hHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 009446 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (534)
Q Consensus 232 LEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~eler 269 (534)
|+.-|..+...+......+..+...+..-+..+.++..
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRR 709 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443
No 19
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=90.57 E-value=25 Score=37.01 Aligned_cols=185 Identities=21% Similarity=0.277 Sum_probs=101.3
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCC---CCCCCCCC--
Q 009446 98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSN---FKNFSAGG-- 172 (534)
Q Consensus 98 ~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~---~k~f~~~~-- 172 (534)
|-.|+.-+...++-+.+.++.+..+ |-.--.|+..|...+.. ++-.-+|+.....+.| .-+|.|++
T Consensus 121 L~kE~~li~~~~~lL~~~l~~~~eQ-------l~~lr~ar~~Le~Dl~d--K~~A~~ID~~~~~L~~~S~~i~~~~~~~r 191 (384)
T PF03148_consen 121 LLKEVELIENIKRLLQRTLEQAEEQ-------LRLLRAARYRLEKDLSD--KFEALEIDTQCLSLNNNSTNISYKPGSTR 191 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCccCCCcccCCccc
Confidence 4445555666666666666666554 22222233334333322 2333344444433333 22233322
Q ss_pred -CCCCccccCchhHHHHhhhchhHHHHHH---Hhhhhhh-hhhhhHHHHH-------hhhhcceeeeeehhhHHHhhhch
Q 009446 173 -LPRSQKYTGLPAVVYGVIKRTNEIVEEL---VGQIDAT-AKSRNDVREQ-------MEQRNFEIAIEVSELEATISGLR 240 (534)
Q Consensus 173 -lP~SqKYtGl~avaygv~KR~neiveel---~~Q~da~-~k~rn~aReq-------meqrny~iAIEVSqLEa~is~lr 240 (534)
-|.+.-|.-....++..|.++..-+..- -..|+.+ ...+++.+.| +.+|=++.--=-.+||-......
T Consensus 192 ~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~ 271 (384)
T PF03148_consen 192 IPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTL 271 (384)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2444455566666677777665433221 1112211 1223333333 33444444445568888888888
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHH------------------------hHHHHHHHHHHHHHHhhchhhh
Q 009446 241 EEVAKKSSFIENLEKSLIEKDEKVAEIES------------------------QGLELRQLVNEYEDKLKNLESH 291 (534)
Q Consensus 241 ~eva~k~s~~e~l~k~~~eke~ki~eler------------------------E~~~lKe~V~e~E~klk~~e~~ 291 (534)
+|++.=...++.|++++.+|++-+.-.+. ||..|++.+..|..+|..++..
T Consensus 272 ~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~ 346 (384)
T PF03148_consen 272 QEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEAS 346 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998889999999999999776443222 7777888887777777666533
No 20
>PRK09039 hypothetical protein; Validated
Probab=89.91 E-value=7.8 Score=40.31 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=76.3
Q ss_pred HhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhc---ceeeeeehhhHHHhhhchHHHhhh-------hhhHHHHHHHH
Q 009446 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRN---FEIAIEVSELEATISGLREEVAKK-------SSFIENLEKSL 257 (534)
Q Consensus 188 gv~KR~neiveel~~Q~da~~k~rn~aReqmeqrn---y~iAIEVSqLEa~is~lr~eva~k-------~s~~e~l~k~~ 257 (534)
+-..+..+.+.+|=.|++++...|.++..+..... -+.---..+|.+.+...+...+.. .+.++.|.+++
T Consensus 74 ~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 74 QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34467788899999999999999999988766321 011111222333333333333333 33444444444
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHH----HHHHHhh-----cCCCcccccccc
Q 009446 258 IEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV----DDIIKIV-----DDGNLDQSGLSE 328 (534)
Q Consensus 258 ~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L----~~vi~~v-----d~~k~~~s~lsE 328 (534)
..-+..|.+.+....+.+.+++.|...| +..|.+-...+......+ .+++..- .++.. ..-++
T Consensus 154 a~le~~L~~ae~~~~~~~~~i~~L~~~L------~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~--~~~~~ 225 (343)
T PRK09039 154 AALEAALDASEKRDRESQAKIADLGRRL------NVALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRF--VFQSE 225 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEE--EecCC
Confidence 4444444444444444444444444444 333333344444454444 3333221 11211 12356
Q ss_pred ccCCCcccchhHHHHHhHh
Q 009446 329 SLFLPQETDMEENIRASLA 347 (534)
Q Consensus 329 s~f~~~etD~Ee~lK~sl~ 347 (534)
.+|-++.+++...-+..|.
T Consensus 226 vlF~~gsa~L~~~~~~~L~ 244 (343)
T PRK09039 226 VLFPTGSAELNPEGQAEIA 244 (343)
T ss_pred ceeCCCCcccCHHHHHHHH
Confidence 7888887776664444443
No 21
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.11 E-value=3.4 Score=37.20 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=36.4
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~ 303 (534)
++.|.+..+.++.++..-.+..+.....+...+....+ +=..|..-+.+++..+..|..||.+|.+||..+|
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ls 132 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLESLS 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444444444444444444444444444433332221 1123334444444444445899999999998764
No 22
>PRK11637 AmiB activator; Provisional
Probab=88.29 E-value=37 Score=35.76 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=22.6
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 233 Ea~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
+..|..++.+...-...+..+++.+.....+|..++.++..+...+..++..+
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444444444444
No 23
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.29 E-value=7.8 Score=40.56 Aligned_cols=138 Identities=20% Similarity=0.312 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHH----H
Q 009446 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIA----E 104 (534)
Q Consensus 29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~----~ 104 (534)
.+++.+|..-||+=.+-|.--.+-+..+++.+..=|.=.-+.-..=--++|+..--+-.-+..-+.++||+.+|. +
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q 96 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ 96 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence 567788888887766666666667777777776666544444333333444444434444555577777887776 2
Q ss_pred Hh---hhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccC
Q 009446 105 VN---IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG 181 (534)
Q Consensus 105 v~---~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtG 181 (534)
|+ +|-.-..+|++-..- +.. -+++|++.|-.-..+|--.++---.|-|+| +.|++.+|.|+|
T Consensus 97 v~~lEgQl~s~Kkqie~Leq----------elk----r~KsELErsQ~~~~~~~~sl~~~stpqk~f-~~p~tp~q~~~~ 161 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQ----------ELK----RCKSELERSQQAASSGDVSLNPCSTPQKSF-ATPLTPSQYYSD 161 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHH----HHHHHHHHHHHhhccCCccccccCCchhhc-cCCCChhhhhhh
Confidence 21 111222223322111 123 388999988887777776777677788899 788888877765
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.06 E-value=28 Score=34.11 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=72.1
Q ss_pred hhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 202 ~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~ 281 (534)
..+...+..-.+++..|++|++...==+.+||..+ ..-....+....-+.+-..++.-++.++....++++.+
T Consensus 67 ~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l-------~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 67 EEAEKRADESERARKVLENREQSDEERIEELEQQL-------KEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555556788999999998877777777777 44445556666667777778888888888888888888
Q ss_pred HHHhhchhhhchhHHHHhhhHHHHHHHH
Q 009446 282 EDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (534)
Q Consensus 282 E~klk~~e~~r~lL~dql~~v~~ihd~L 309 (534)
+.+++.|+..=..+-.+|.++..-.+..
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 8888888866666666666655444433
No 25
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.53 E-value=86 Score=38.13 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=84.0
Q ss_pred HHHHHHhHHHHHhhH------HHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhcccch
Q 009446 357 RIVVEKTRDLVQKKS------REVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFK 430 (534)
Q Consensus 357 keV~~Kv~~~~E~k~------kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~E~~qkrseLLQiAE~GLqevGfgF~ 430 (534)
+.++.+++--.++++ ++...|++.+..|.+.+.....+-+.+.+|++++.....+.. ++
T Consensus 394 ss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~----------~s----- 458 (1195)
T KOG4643|consen 394 SSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVT----------RS----- 458 (1195)
T ss_pred hhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hh-----
Confidence 345556665555554 345589999999999999999999999999988442222211 11
Q ss_pred hhcccCCCCCCCCccccCCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHH
Q 009446 431 FSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLE---AQAKE 502 (534)
Q Consensus 431 ~~~i~Gdg~~e~S~d~~~~~s~eEdEV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E---~QaKE 502 (534)
++. -.-..+..+-+.+++.-+..+.-.++..|..|..+|+.+--|.++|....+ .|.|+
T Consensus 459 ----~~r---------q~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt 520 (1195)
T KOG4643|consen 459 ----LSR---------QSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKT 520 (1195)
T ss_pred ----HHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 011224556699999999999999999999999999999999988876543 45544
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.31 E-value=23 Score=32.12 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=32.2
Q ss_pred HhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhh
Q 009446 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAK 245 (534)
Q Consensus 188 gv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~ 245 (534)
.-..++=.+|-+||.++|-....|...-.++-.-.|++ ..|...+.+|++.++.
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~----~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDI----ERLQNDVERLKEQLEE 84 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHH
Confidence 33455667889999999887777766555554444432 3444455444444443
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.14 E-value=42 Score=33.25 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=40.1
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH----HHHHHHhhchhhhchhHHHHhhhHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV----NEYEDKLKNLESHRPLLVDQLNYVSK 304 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V----~e~E~klk~~e~~r~lL~dql~~v~~ 304 (534)
+..-...+..+|+|+..-...+..|...+..-..+...|++.+..+.... ..+...+..++..-.-|-..+.....
T Consensus 204 ~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 204 SEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 33344455555666655555555555555555555555555333332222 23333343334333334444444434
Q ss_pred HHHHHHHHHHhh
Q 009446 305 IHDQVDDIIKIV 316 (534)
Q Consensus 305 ihd~L~~vi~~v 316 (534)
=|..|.++--.+
T Consensus 284 ey~~Ll~~K~~L 295 (312)
T PF00038_consen 284 EYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 444444444333
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.55 E-value=78 Score=35.85 Aligned_cols=88 Identities=27% Similarity=0.355 Sum_probs=56.0
Q ss_pred hhhhhhhhhhhHH---HHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 009446 202 GQIDATAKSRNDV---REQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (534)
Q Consensus 202 ~Q~da~~k~rn~a---Reqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V 278 (534)
.|++-+-+-+++- ..+++..+-+.-++|.+|++.+...+++...-....+.+..+......+...|..+...++.+|
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555553 3455566656666777777777777777776666666666655555555666666666677777
Q ss_pred HHHHHHhhchh
Q 009446 279 NEYEDKLKNLE 289 (534)
Q Consensus 279 ~e~E~klk~~e 289 (534)
.+|+..+.++.
T Consensus 223 ~~LEedi~~l~ 233 (546)
T PF07888_consen 223 RELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHH
Confidence 77766665554
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.43 E-value=1e+02 Score=37.26 Aligned_cols=289 Identities=22% Similarity=0.338 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHH---HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhh
Q 009446 31 RFREVLAELNRERQAREAAENSATELSE---KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNI 107 (534)
Q Consensus 31 ~~~~l~ael~~er~~r~aae~s~~e~~~---~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~ 107 (534)
.+++|..+|+-=|..|.---.-+-|++. .|.-|-.|---.+-+--++.|+=-.+-.+++++.-..++.-.++.+.-.
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad 311 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTAD 311 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777666655443333444332 2333333333444455556666666666778888888888777764432
Q ss_pred h-------------HHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 009446 108 A-------------KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (534)
Q Consensus 108 ~-------------~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP 174 (534)
. |-|.-.+==++++. .+|+.+--++-|++|+++- | +
T Consensus 312 ~iEmaTldKEmAEERaesLQ~eve~lkE------r~deletdlEILKaEmeek------------G----------~--- 360 (1243)
T KOG0971|consen 312 AIEMATLDKEMAEERAESLQQEVEALKE------RVDELETDLEILKAEMEEK------------G----------S--- 360 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc------------C----------C---
Confidence 2 11111111122333 2344555566677777664 1 0
Q ss_pred CCccccCchhHHHHhhhch---hH-HHHHHHhhhhhhhhh---hhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhh
Q 009446 175 RSQKYTGLPAVVYGVIKRT---NE-IVEELVGQIDATAKS---RNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKS 247 (534)
Q Consensus 175 ~SqKYtGl~avaygv~KR~---ne-iveel~~Q~da~~k~---rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~ 247 (534)
|-|+..-|-.|+. |. +=|-|||-+|-.+-. |..+---||-.|- |+++|.
T Consensus 361 ------~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~s----E~~eL~-------------- 416 (1243)
T KOG0971|consen 361 ------DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNS----ELEELR-------------- 416 (1243)
T ss_pred ------CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh----HHHHHH--------------
Confidence 1111111223332 21 334455555544322 2223333333332 122222
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhHH---HHHHHHHHHHHHhhchhhhchhHHH---HhhhHHHHHHHHHHHHHhhcCCCc
Q 009446 248 SFIENLEKSLIEKDEKVAEIESQGL---ELRQLVNEYEDKLKNLESHRPLLVD---QLNYVSKIHDQVDDIIKIVDDGNL 321 (534)
Q Consensus 248 s~~e~l~k~~~eke~ki~elerE~~---~lKe~V~e~E~klk~~e~~r~lL~d---ql~~v~~ihd~L~~vi~~vd~~k~ 321 (534)
..-|+|++.+.+-|.+|+++...|- ..-+-|.-|-++-=|||++=++|-+ +|.-+.-|+++|.+.-+-+.-+
T Consensus 417 r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~D-- 494 (1243)
T KOG0971|consen 417 RQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELD-- 494 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 2335555555555666664444111 0111122232333344566666655 4445566777776665544311
Q ss_pred cccccccccCCCcccchh-----HHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 009446 322 DQSGLSESLFLPQETDME-----ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE 387 (534)
Q Consensus 322 ~~s~lsEs~f~~~etD~E-----e~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kE 387 (534)
| ..++|+- +..+-.-+.+++||++--++. |++.++-.=...+.++-..+.++.+|
T Consensus 495 ----L------reEld~~~g~~kel~~r~~aaqet~yDrdqTI~-KfRelva~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 495 ----L------REELDMAKGARKELQKRVEAAQETVYDRDQTIK-KFRELVAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred ----H------HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1 1223322 223334567888998876553 66666655554555554444444444
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.83 E-value=96 Score=36.36 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=84.1
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHH
Q 009446 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (534)
Q Consensus 230 SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L 309 (534)
+.|-+-+-.||-++..+-+.++...+++..-....+-+.-|++.|++..+..+.++.-|..+-.-|-+++. .=...|
T Consensus 339 ~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~---ekd~ql 415 (775)
T PF10174_consen 339 EMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR---EKDRQL 415 (775)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34666777777777778777777777777777777777778889999988888888555444222333331 222335
Q ss_pred HHHHHhhcCCCccccccccccCCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhh
Q 009446 310 DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKE 389 (534)
Q Consensus 310 ~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kEne 389 (534)
.....++.. ..+ + +.+-+. . +-+++.+...-.-...|-++-.....-...=.+.-+++.+.+..+|.+|-++-.
T Consensus 416 ~~~k~Rl~~-~~d-~--~~~~~~-~-~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 416 DEEKERLSS-QAD-S--SNEDEA-L-ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHhc-ccc-c--cchHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 555566654 331 1 000000 0 113333333332233332221111212223335566677777778877777655
Q ss_pred hHH
Q 009446 390 HIV 392 (534)
Q Consensus 390 dI~ 392 (534)
+-.
T Consensus 490 Ek~ 492 (775)
T PF10174_consen 490 EKE 492 (775)
T ss_pred HHH
Confidence 444
No 31
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.54 E-value=22 Score=32.32 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=39.7
Q ss_pred HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 213 ~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
-+|+-|..|+ .+..++..++..+ +++.+..+.|..+-..+.++|..++.++..+.+.+.......
T Consensus 104 s~k~~l~~R~-~~~~~~~~~~~~l-------~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 104 AVKETLDDRA-DALLTLQSLKKDL-------ASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRY 168 (218)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677776 5666666666666 666666666655544455677766666666655555544333
No 32
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=82.09 E-value=0.43 Score=54.72 Aligned_cols=38 Identities=42% Similarity=0.539 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHH
Q 009446 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKAL 66 (534)
Q Consensus 29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkal 66 (534)
.-++.+|-.+|+.||.+|..||-.++.|..-+.=|+.-
T Consensus 45 q~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~ 82 (859)
T PF01576_consen 45 QARIEELEEELESERQARAKAEKQRRDLSEELEELKER 82 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999999999999998888766654
No 33
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.00 E-value=14 Score=37.16 Aligned_cols=130 Identities=25% Similarity=0.279 Sum_probs=85.8
Q ss_pred cccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhc
Q 009446 160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239 (534)
Q Consensus 160 ~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~l 239 (534)
=|-+--|+||..||...+|+...+.-.--++.-.+..|++|=+|||.. ||-+
T Consensus 94 EkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~-------------------------E~E~--- 145 (233)
T PF04065_consen 94 EKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQL-------------------------EAEI--- 145 (233)
T ss_pred HHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHH---
Confidence 345677999999999998887777766677777777777777776643 2222
Q ss_pred hHHHhhhhhhHHHHH------HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHH
Q 009446 240 REEVAKKSSFIENLE------KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDII 313 (534)
Q Consensus 240 r~eva~k~s~~e~l~------k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi 313 (534)
|+|. +..+.+.+++.+++.-++-.+--|..||.-|+.|+.-. + .-..|..|++.|.-.|
T Consensus 146 -----------E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l---~~e~V~~ikedieyYv 210 (233)
T PF04065_consen 146 -----------ESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-L---DPEQVEDIKEDIEYYV 210 (233)
T ss_pred -----------HHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C---CHHHHHHHHHHHHHHH
Confidence 2222 23446788888888888888888888888888777332 1 1255567888888888
Q ss_pred HhhcCCC-ccccccccccCC
Q 009446 314 KIVDDGN-LDQSGLSESLFL 332 (534)
Q Consensus 314 ~~vd~~k-~~~s~lsEs~f~ 332 (534)
+.=.+.- .+-..+++.+++
T Consensus 211 e~n~d~Df~ede~iYddl~L 230 (233)
T PF04065_consen 211 ESNQDPDFEEDEDIYDDLNL 230 (233)
T ss_pred HcCCCCcccchHhHhhccCC
Confidence 8633321 222344444444
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=80.79 E-value=1.1e+02 Score=34.70 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHH
Q 009446 34 EVLAELNRERQAREAAENSATELSEKFNRLKALA 67 (534)
Q Consensus 34 ~l~ael~~er~~r~aae~s~~e~~~~f~rlkala 67 (534)
++.+++..=+..-..++.....++..++.|....
T Consensus 204 ~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~ 237 (880)
T PRK03918 204 EVLREINEISSELPELREELEKLEKEVKELEELK 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444434444444444444444444444443
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.07 E-value=1.5e+02 Score=36.02 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=15.7
Q ss_pred hhhchhHHHHhhhHHHHHHHHHHHHHhhc
Q 009446 289 ESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (534)
Q Consensus 289 e~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (534)
...+--|..++.....+...|.++...+.
T Consensus 870 ~~~klkl~~~l~~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 870 KSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566666666666655543
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.95 E-value=1.6e+02 Score=36.13 Aligned_cols=166 Identities=19% Similarity=0.253 Sum_probs=108.5
Q ss_pred hcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhh
Q 009446 221 RNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (534)
Q Consensus 221 rny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~ 300 (534)
|--+.--+|+-|++.+..++.++.+..+-+......+..-+.++.++...+++++..+.+-+..+..-++-...+-+++.
T Consensus 288 rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~ 367 (1174)
T KOG0933|consen 288 RDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQ 367 (1174)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 45566678899999999999999999999999988898889999999998888888887766666665666677788888
Q ss_pred hHHHHHHHHHHHHHhhcCCCccccccccccCCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHH
Q 009446 301 YVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEA 380 (534)
Q Consensus 301 ~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~s 380 (534)
..++....-.+.+..|..+.. +. + |-+..+-.-|..++.-.--+..-.....--++--+++++..+..
T Consensus 368 ~~s~~~e~~e~~~eslt~G~S--s~---------~-~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e 435 (1174)
T KOG0933|consen 368 EDSKLLEKAEELVESLTAGLS--SN---------E-DEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGE 435 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcccc--cC---------c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 888888888888888876654 11 0 11222222233333222222222222233334445555555555
Q ss_pred HHHHHHhhhhHHHHHHHH
Q 009446 381 VGQLVKEKEHIVSLLRSA 398 (534)
Q Consensus 381 V~~L~kEnedI~sLLRsA 398 (534)
+....++..+-...|+.-
T Consensus 436 ~~t~~~~~~~~~~~ld~~ 453 (1174)
T KOG0933|consen 436 LATASAEYVKDIEELDAL 453 (1174)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 555555555444444443
No 37
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.65 E-value=6.5 Score=44.10 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=0.0
Q ss_pred cceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHh
Q 009446 222 NFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES-------QGLELRQLVNEYEDKL 285 (534)
Q Consensus 222 ny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~eler-------E~~~lKe~V~e~E~kl 285 (534)
+..+-.++.+|+..|..|..+.+.-...++++..++..-...+..++| |+..||..+..||...
T Consensus 359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344445555555555555555544444445554444444444444444 5555555555554443
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.22 E-value=39 Score=34.67 Aligned_cols=59 Identities=29% Similarity=0.360 Sum_probs=33.1
Q ss_pred eeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 227 IEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
.|+..|-+.+.-+..+++.+...+..|+..+...+.+|.++..+...+...|.+++...
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555655555666666666666666655555555555555544433
No 39
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=77.63 E-value=1.9e+02 Score=35.91 Aligned_cols=61 Identities=25% Similarity=0.382 Sum_probs=42.3
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHH
Q 009446 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDII 313 (534)
Q Consensus 253 l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi 313 (534)
+..+.++.+.++++.+.+...++..|..++..++++...+.-+.+-+..+.+....|..-.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~ 552 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAE 552 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 4456666677777777777777777777777777777777777777777777766665443
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.33 E-value=1.5e+02 Score=34.39 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 009446 476 VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (534)
Q Consensus 476 ~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELE 514 (534)
.||=.+|.++|-+.+.++..+-.|.+||.++...|.+|-
T Consensus 618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999998874
No 41
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.44 E-value=1.4e+02 Score=36.40 Aligned_cols=169 Identities=20% Similarity=0.199 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccchhHHHHHhHhhh
Q 009446 270 QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGM 349 (534)
Q Consensus 270 E~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~~ 349 (534)
..+.+.++|.+++..+.++|.-|..|+++|.++.-...--..+=+..++..+ ....++.++-..
T Consensus 524 qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~----------------~~~elkk~idaL 587 (1195)
T KOG4643|consen 524 QYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLEL----------------IHNELKKYIDAL 587 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH----------------HHHHHHHHHHHH
Confidence 4556677889999999999988888888888776541111111111111111 112222222222
Q ss_pred hhHHHHHHHHHHHh-HHHHHhhH----HHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhh
Q 009446 350 ESIYQLTRIVVEKT-RDLVQKKS----REVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLRE 424 (534)
Q Consensus 350 ksI~eLakeV~~Kv-~~~~E~k~----kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~E~~qkrseLLQiAE~GLqe 424 (534)
.+.-.=-.-++.+. +.|+-... +.+.-|-..+.-|.++|.|++.+..=-|. +.+ -.+++.+| ||..
T Consensus 588 ~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kll~~Kkdr~ree~kel~-------~ek-l~ve~l~e-~l~~ 658 (1195)
T KOG4643|consen 588 NALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKLLKEKKDRNREETKELM-------DEK-LQVEDLQE-KLRE 658 (1195)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhhcchhHHHHHHHHhhcc-------ccc-hhHHHHHH-HHHh
Confidence 21111111112221 22322222 22223444456666777777666544333 111 33344433 6666
Q ss_pred hcccchhhcccCCCCCCCCccccCCCcchhHHHHhHHHHHHHHHHHHHH
Q 009446 425 AGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQL 473 (534)
Q Consensus 425 vGfgF~~~~i~Gdg~~e~S~d~~~~~s~eEdEV~SLAsalEniMK~sql 473 (534)
---.|+- .+ .+....|+.+.+|=.+++|.+.|.+..++.
T Consensus 659 lp~~fkt-------~n---~e~l~V~sn~lEe~qr~~~~~sn~~~~l~q 697 (1195)
T KOG4643|consen 659 LPLEFKT-------KN---DEILMVGSNILEERQRLGGCKSNAEIDLLQ 697 (1195)
T ss_pred Cchhhcc-------cc---chhhhhhhhhhhhhhhhccccccchHHHHH
Confidence 6666651 12 223334667777889999999999998876
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.41 E-value=2e+02 Score=35.11 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Q 009446 457 IYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKER 518 (534)
Q Consensus 457 V~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEEREr 518 (534)
+-+.=.-+++-.+.+..+|..|++.+..+|.+..-++.-+..=..+..+....|..|.-+=.
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~ 453 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIE 453 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444455666677777777777777777777766666655555555555555655554433
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.70 E-value=2.3e+02 Score=34.79 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=10.6
Q ss_pred HHHhhHHHHhhHHHHHHHHHH
Q 009446 366 LVQKKSREVKSLNEAVGQLVK 386 (534)
Q Consensus 366 ~~E~k~kE~k~Le~sV~~L~k 386 (534)
.+...++++..++..|+-+-+
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~ 386 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEK 386 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555443
No 44
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.26 E-value=1.5e+02 Score=32.72 Aligned_cols=312 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHhhHhHHHHHHHhhHHHHH--HHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHh-hhHHHHHHHHHHHhh
Q 009446 45 AREAAENSATELSEKFNRLKALAH--ESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVN-IAKDEVVKQLDEVTK 121 (534)
Q Consensus 45 ~r~aae~s~~e~~~~f~rlkala~--ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~-~~~de~~k~~~~~~~ 121 (534)
|-...|..+++++..|.-+..|.. +-++-|+-+..-+.. +..-+..+..-++|-.++..+- .|-+++..-..+...
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~-~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEE-LAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred hhcCCccchhhhhhhhhhhhHHhhhhhhhhhhh-hhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHH
Q 009446 122 ARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTG-IEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEEL 200 (534)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg-~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel 200 (534)
. |-.-.-+....-.+.++..|..+..+|.++ ++....++..... ----.|..+.+--.--..+
T Consensus 245 ~--gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~--------------~Id~Lyd~lekE~~A~~~v 308 (569)
T PRK04778 245 E--GYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQE--------------RIDQLYDILEREVKARKYV 308 (569)
T ss_pred c--CCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHH----------hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 009446 201 VGQIDATAKSRNDVREQMEQRNFEIAIEVSELEAT----------ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQ 270 (534)
Q Consensus 201 ~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~----------is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE 270 (534)
-+......+.-+.+++| |.+...|...|-.+ +.++..++..-......+...+..+....++++.+
T Consensus 309 ek~~~~l~~~l~~~~e~----~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~ 384 (569)
T PRK04778 309 EKNSDTLPDFLEHAKEQ----NKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEE 384 (569)
T ss_pred HHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhchh----hhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccchhHHHHHhH
Q 009446 271 GLELRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASL 346 (534)
Q Consensus 271 ~~~lKe~V~e~E~klk~~e----~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl 346 (534)
...+.+.+..++.....+. ..|+--.+.-+.+..+...|..+-+.+.-.++ .++|+++-.. .-
T Consensus 385 leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~l--pgip~~y~~~-----------~~ 451 (569)
T PRK04778 385 LEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNL--PGLPEDYLEM-----------FF 451 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHH-----------HH
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhH
Q 009446 347 AGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHI 391 (534)
Q Consensus 347 ~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kEnedI 391 (534)
..-..|..|...+.. ..-=|+.-.++.......+..|.++..|+
T Consensus 452 ~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL 495 (569)
T PRK04778 452 EVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEEL 495 (569)
T ss_pred HHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=72.98 E-value=1.7e+02 Score=33.20 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=113.3
Q ss_pred HHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCcc
Q 009446 49 AENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRS 128 (534)
Q Consensus 49 ae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~ 128 (534)
+....++++..+.+|+.=.-++.++=++..+.|..+-.+.-..+..-..+-.++..++.-...+.-.+..+-+.=..-+.
T Consensus 104 ~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 104 TARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33456777888888887777766666666555554433333333333333333333333333333333332222222222
Q ss_pred chhhhhhhhh---hhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhchh--HHHHHH-Hh
Q 009446 129 QLDEVTKAKD---GLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTN--EIVEEL-VG 202 (534)
Q Consensus 129 ~~~~~~~~~~---~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~n--eiveel-~~ 202 (534)
+|..+-+.+| .|+.+..+...+|. +.|.. +++.+ +|.++. ..
T Consensus 184 ~l~~~r~~ld~Etllr~d~~n~~q~Ll---eel~f-----------------------------~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 184 ELARARKQLDDETLLRVDLQNRVQTLL---EELAF-----------------------------LKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHH-----------------------------HHhccHHHHHHHHHHH
Confidence 2222211111 25566666666664 33322 23322 444443 24
Q ss_pred hhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhh----hhHHHHHHHHHHhHHHHHHHH----------
Q 009446 203 QIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKS----SFIENLEKSLIEKDEKVAEIE---------- 268 (534)
Q Consensus 203 Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~----s~~e~l~k~~~eke~ki~ele---------- 268 (534)
++|.|+..| +... ++|-++|-.+|++-..-. ..||.| . ..||.++.
T Consensus 232 ~rd~t~~~r----~~F~----------~eL~~Ai~eiRaqye~~~~~nR~diE~~---Y---~~kI~~i~~~~~~~~~~~ 291 (546)
T KOG0977|consen 232 RRDTTADNR----EYFK----------NELALAIREIRAQYEAISRQNRKDIESW---Y---KRKIQEIRTSAERANVEQ 291 (546)
T ss_pred hhcccccch----HHHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHH---H---HHHHHHHHhhhccccchh
Confidence 556664444 4333 467888888888765433 345555 2 34566666
Q ss_pred ----HhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHH
Q 009446 269 ----SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (534)
Q Consensus 269 ----rE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ 304 (534)
.|+..++..+..+-+++.+++..+..|..++.-+..
T Consensus 292 ~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 292 NYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEY 331 (546)
T ss_pred HHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHh
Confidence 489999999999999999999999999988766543
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=72.79 E-value=2.3e+02 Score=34.39 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhh--------------hhhhhhhcccCCC
Q 009446 110 DEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV--------------TGIEKISGKVSNF 165 (534)
Q Consensus 110 de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~--------------sg~ekis~k~s~~ 165 (534)
..+..+...+-+.|+-...+|....+.+..++..+...-++|. .|-+.-=|||-+-
T Consensus 493 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~ 562 (1201)
T PF12128_consen 493 EELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDE 562 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCH
Confidence 3444444555555555555666666667777777777777763 4666666888664
No 47
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=71.29 E-value=1.3 Score=50.91 Aligned_cols=104 Identities=27% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHH
Q 009446 32 FREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDE 111 (534)
Q Consensus 32 ~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de 111 (534)
+.+|.++|+..-+++-.+|...-.++..++-|++-+.+.=+.+.++ -..+.+|..++.++..+-++
T Consensus 161 ~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el--------------~~~k~kL~~E~~eL~~qLee 226 (859)
T PF01576_consen 161 LDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNEL--------------TEQKAKLQSENSELTRQLEE 226 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444444444444333333333 33445677777777766666
Q ss_pred HHHHHHHHhhhhcC-------CccchhhhhhhhhhhhHHhhhhhh
Q 009446 112 VVKQLDEVTKARDG-------SRSQLDEVTKAKDGLRSEIENSAH 149 (534)
Q Consensus 112 ~~k~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~ei~~s~~ 149 (534)
...++..+.+.+.. .+.+|++-++++..|.+.+.+.-+
T Consensus 227 ~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~ 271 (859)
T PF01576_consen 227 AESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEH 271 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHH
Confidence 66666666554433 344555666666666555444433
No 48
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=70.34 E-value=39 Score=39.52 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---hhHhHHHHHHHhhHH--------HHHHHHhhhhhhHHHHHH-----HHHHHH
Q 009446 26 DFSVERFREVLAELNRERQAREAAE---NSATELSEKFNRLKA--------LAHESIKRRDESTRQRDE-----ALREKE 89 (534)
Q Consensus 26 ~~~~~~~~~l~ael~~er~~r~aae---~s~~e~~~~f~rlka--------la~ea~kkrde~~r~rd~-----a~r~ke 89 (534)
-+--+++..|-.|.|.|=-+-=.+. ..+.-|..-|.+-|+ |...+-+=.+|+...=.+ .+++|-
T Consensus 458 ~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kl 537 (762)
T PLN03229 458 LALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKL 537 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 3556777777778887643322221 112222233444444 444466667788777777 789999
Q ss_pred HHhhhccc---hhHHHHHHhhhHHHHHHHHHHHh
Q 009446 90 EILRSNDK---LSTEIAEVNIAKDEVVKQLDEVT 120 (534)
Q Consensus 90 ~~~~~~~~---~s~~l~~v~~~~de~~k~~~~~~ 120 (534)
++|++--+ +|.--.....-++++-|+|.++.
T Consensus 538 e~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~ 571 (762)
T PLN03229 538 DMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVM 571 (762)
T ss_pred HHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhc
Confidence 99988766 34333336666788888888844
No 49
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.89 E-value=24 Score=32.76 Aligned_cols=71 Identities=23% Similarity=0.389 Sum_probs=43.1
Q ss_pred HHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 215 REQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 215 Reqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
-.+|+++++.-.-+...+......+++......+.+..+.........++.++..+...+++.+..+...+
T Consensus 97 l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 167 (191)
T PF04156_consen 97 LDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQL 167 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666644444445554444444
No 50
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=69.77 E-value=1.5e+02 Score=31.15 Aligned_cols=76 Identities=20% Similarity=0.359 Sum_probs=53.6
Q ss_pred hhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHHHHh
Q 009446 290 SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQK 369 (534)
Q Consensus 290 ~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~ 369 (534)
..=|.|++-|.+++.+|...-++...+.. ++..+...-..++.--.+-..|..++..-++.
T Consensus 312 ~~lP~lv~RL~tL~~lH~~a~~~~~~l~~-------------------le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~ 372 (388)
T PF04912_consen 312 PSLPSLVERLKTLKSLHEEAAEFSQTLSE-------------------LESQQSDLQSQLKKWEELLNKVEEKFKENMET 372 (388)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66688888888999999888888877762 34444444445555555666777777777777
Q ss_pred hHHHHhhHHHHHHHH
Q 009446 370 KSREVKSLNEAVGQL 384 (534)
Q Consensus 370 k~kE~k~Le~sV~~L 384 (534)
-...++.|+..|..|
T Consensus 373 i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 373 IEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHhcc
Confidence 777777777777655
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.29 E-value=2.1e+02 Score=32.60 Aligned_cols=161 Identities=25% Similarity=0.347 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhh
Q 009446 77 STRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIE 156 (534)
Q Consensus 77 ~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~e 156 (534)
++--||..+|||.++---||+|-.=++.| ++|+.-=+. |..+|.... .|+-
T Consensus 30 as~ir~sR~rEK~El~~LNDRLA~YIekV--------R~LEaqN~~-----------------L~~di~~lr----~~~~ 80 (546)
T KOG0977|consen 30 ASPIRDSREREKKELQELNDRLAVYIEKV--------RFLEAQNRK-----------------LEHDINLLR----GVVG 80 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH-----------------HHHHHHHHH----hhcc
Confidence 34568889999999988888888777655 334331111 555554322 2211
Q ss_pred hhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHh
Q 009446 157 KISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI 236 (534)
Q Consensus 157 kis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~i 236 (534)
+-.++.|. +|. .=++ .+-+-+|-|++.|-.+. |++..|...+
T Consensus 81 ---~~ts~ik~----------~ye--------~El~------~ar~~l~e~~~~ra~~e-----------~ei~kl~~e~ 122 (546)
T KOG0977|consen 81 ---RETSGIKA----------KYE--------AELA------TARKLLDETARERAKLE-----------IEITKLREEL 122 (546)
T ss_pred ---CCCcchhH----------Hhh--------hhHH------HHHHHHHHHHHHHHHHH-----------HHHHHhHHHH
Confidence 11122222 222 1111 12344566666665443 3445555555
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHH
Q 009446 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (534)
Q Consensus 237 s~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ 304 (534)
-.||--+.++...+..-...+.+-...++.++-|...+|-++.-++++++.+...+.=|.++|..+++
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555555555555555566677788888888899999999999998888888888888887775
No 52
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.99 E-value=2e+02 Score=32.22 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=15.9
Q ss_pred cchhHHHHHHhhhHHHHHHHHHHHhh
Q 009446 96 DKLSTEIAEVNIAKDEVVKQLDEVTK 121 (534)
Q Consensus 96 ~~~s~~l~~v~~~~de~~k~~~~~~~ 121 (534)
+.+..++.++....++++++++++..
T Consensus 226 e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 226 EDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665544
No 53
>PRK12704 phosphodiesterase; Provisional
Probab=68.44 E-value=34 Score=37.76 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=31.5
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e 280 (534)
++.+.|..+..-.+.+.+|...++.-++.+..++..+...++++..++..+..
T Consensus 83 ~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~ 135 (520)
T PRK12704 83 ELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666655555566666666666666666666666666655555544433
No 54
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.87 E-value=3.2e+02 Score=34.17 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHH--HHHHHHHhhhccchhHHHHHHhhhHHHHHH
Q 009446 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEA--LREKEEILRSNDKLSTEIAEVNIAKDEVVK 114 (534)
Q Consensus 37 ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a--~r~ke~~~~~~~~~s~~l~~v~~~~de~~k 114 (534)
..++..-++...++.--.+++.-+.++|.-..+.-+ .+...+|-..+ .+--.+.-..+.++++.+.+.....+.+++
T Consensus 451 ~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 451 EKLDEKCQAVAELEEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555556677777888888888877666554 23222221110 000011111234566666666666666666
Q ss_pred HHHHHh
Q 009446 115 QLDEVT 120 (534)
Q Consensus 115 ~~~~~~ 120 (534)
..+...
T Consensus 530 ~~~~~~ 535 (1317)
T KOG0612|consen 530 KNDNAA 535 (1317)
T ss_pred HHHHHH
Confidence 665543
No 55
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.43 E-value=2.1e+02 Score=32.58 Aligned_cols=116 Identities=24% Similarity=0.300 Sum_probs=68.2
Q ss_pred hHhhhhhHHHHHHHHHHHhHHHHHhhHHHHh----------------hHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCC
Q 009446 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVK----------------SLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPS 408 (534)
Q Consensus 345 sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k----------------~Le~sV~~L~kEnedI~sLLRsALsEKea~E~~ 408 (534)
.+..++.+.+-.+.+...+..+.+.-++-.. +.-+.|...-|.+.||...|.=--.
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~-------- 516 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE-------- 516 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------
Confidence 4566666666666666666666554433222 3446777888888888877653211
Q ss_pred CchhhHHHHhhhhhhhhcccchhhcccCCCCCCCCccccCCCcchhHHHHhHHHHHHHHHHHHHHH----------HHHH
Q 009446 409 SKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLE----------IVEL 478 (534)
Q Consensus 409 qkrseLLQiAE~GLqevGfgF~~~~i~Gdg~~e~S~d~~~~~s~eEdEV~SLAsalEniMK~sqlE----------I~eL 478 (534)
|| -|+++|.|-|+++.-..--- .-..
T Consensus 517 -------------lQ-------------------------------keiN~l~gkL~RtF~v~dElifrdAKkDe~~rka 552 (594)
T PF05667_consen 517 -------------LQ-------------------------------KEINSLTGKLDRTFTVTDELIFRDAKKDEAARKA 552 (594)
T ss_pred -------------HH-------------------------------HHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHH
Confidence 11 24566666665554222111 1234
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q 009446 479 RHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (534)
Q Consensus 479 rhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEER 516 (534)
=..|...++.|+-|=..++ +.+..++.|-+||++
T Consensus 553 YK~La~lh~~c~~Li~~v~----~tG~~~rEirdLe~q 586 (594)
T PF05667_consen 553 YKLLASLHENCSQLIETVE----ETGTISREIRDLEEQ 586 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHH
Confidence 4567777888877776655 456677778888765
No 56
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.37 E-value=39 Score=28.36 Aligned_cols=52 Identities=29% Similarity=0.414 Sum_probs=35.1
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHH
Q 009446 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303 (534)
Q Consensus 252 ~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~ 303 (534)
+|++-+.+||+.|+.|-.|++.|-...-.+..-++.|..+..-+-.++..+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999988888888877766666666555555544444444443
No 57
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.10 E-value=95 Score=27.82 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCccc----------------
Q 009446 273 ELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQET---------------- 336 (534)
Q Consensus 273 ~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~et---------------- 336 (534)
.+......|...+..+..+..-|-..+.-+....+.|..+-..-++...- -.|..++|+|...
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~l-vplg~~~yv~~~v~~~~kV~v~lG~g~~v 88 (140)
T PRK03947 10 ELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETL-VPIGAGSFVKAKVKDKDKVIVSLGAGYSA 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEE-EEcCCCcEEEEEecCCCeEEEEcCCCEEE
Confidence 44444444444444445555555555555555555555554332332222 4566777776665
Q ss_pred --chhHHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 009446 337 --DMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE 387 (534)
Q Consensus 337 --D~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kE 387 (534)
++++.+.++-.....+-.....+ ..=..........+...+..|..+
T Consensus 89 E~~~~eA~~~l~~~~~~l~~~~~~l----~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 89 EKDLDEAIEILDKRKEELEKALEKL----EEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666555555444433222 222233333444444555554443
No 58
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=65.88 E-value=1.9e+02 Score=30.74 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=76.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCcccccccccc
Q 009446 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESL 330 (534)
Q Consensus 251 e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~ 330 (534)
..++-....-+.....|--|++.+|++.+-- --.+=.+-..|-|-+.-.+.|+++|.+-|+.+.--+.
T Consensus 55 ~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q---~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaND--------- 122 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTEQERNKEKQEDQ---RVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAND--------- 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3444444444444444445666666554221 0001145556777788888899999988888875444
Q ss_pred CCCcccchhHHHHHh---HhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhc
Q 009446 331 FLPQETDMEENIRAS---LAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRM 403 (534)
Q Consensus 331 f~~~etD~Ee~lK~s---l~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKe 403 (534)
|+|..-|+- |+-+..=+.-|. --+.|+|..=-|+..|=++|.+|..|-+|.+-=| |+..|+
T Consensus 123 ------dLErakRati~sleDfeqrLnqAI----ErnAfLESELdEke~llesvqRLkdEardlrqel--avr~kq 186 (333)
T KOG1853|consen 123 ------DLERAKRATIYSLEDFEQRLNQAI----ERNAFLESELDEKEVLLESVQRLKDEARDLRQEL--AVRTKQ 186 (333)
T ss_pred ------HHHHhhhhhhhhHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh
Confidence 455544443 222222222111 1256788887888889999999999999988766 444444
No 59
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=64.45 E-value=1.4e+02 Score=33.62 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=58.6
Q ss_pred hhhhhhhHHHHHhhhhcceeeee----ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446 206 ATAKSRNDVREQMEQRNFEIAIE----VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 206 a~~k~rn~aReqmeqrny~iAIE----VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~ 281 (534)
-|..+|.--|..+|+|-..+-.+ .+.+=..|.++...|++=.+.++.+.+.+......-..+-.++..|++.-..+
T Consensus 13 nt~~aRr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~ 92 (618)
T PF06419_consen 13 NTLEARRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEEL 92 (618)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999987665554 46677778888888888888888888777777777776666777776666665
Q ss_pred HHHh
Q 009446 282 EDKL 285 (534)
Q Consensus 282 E~kl 285 (534)
+.|-
T Consensus 93 ~~k~ 96 (618)
T PF06419_consen 93 ELKK 96 (618)
T ss_pred HHHH
Confidence 4443
No 60
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=61.52 E-value=32 Score=34.51 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHH
Q 009446 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEEL 513 (534)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkEL 513 (534)
..+|+++.+-..-..+|++.|+.++.|+..|+-.+|.+.-+|.+...+=++|
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888899999999999999999999999998888877665553
No 61
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.23 E-value=4e+02 Score=32.93 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Q 009446 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524 (534)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEERErvanenV 524 (534)
++.++.+..+|+.+|++.|.++ +.+.++|.+.+-.++.+|..-.-+-.++
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i-------~~~~~~i~q~~~~~qk~e~~~~~~~~~~ 722 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEI-------EDIDQKIDQLNNNMQKVENDRNAFKREH 722 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444555666666666666554 4567777777777777776544443333
No 62
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.45 E-value=1.6e+02 Score=28.12 Aligned_cols=149 Identities=19% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhh-hhHHHHHHHHHHhHHHHHHHH
Q 009446 190 IKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKS-SFIENLEKSLIEKDEKVAEIE 268 (534)
Q Consensus 190 ~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~-s~~e~l~k~~~eke~ki~ele 268 (534)
+..+..-|-.+...-.-..+..+++...+..+. .+.+.++..=++++|+.+ .....++..+..-...+....
T Consensus 39 l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~-------~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~ 111 (221)
T PF04012_consen 39 LRKARQALARVMANQKRLERKLDEAEEEAEKWE-------KQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAE 111 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccchhHHHHHhHhh
Q 009446 269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAG 348 (534)
Q Consensus 269 rE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~ 348 (534)
..+..|+..+..++.++.+++.++..|.-+.. ..+.+..+...+..++.+.. .+.+-.+++-+...-..
T Consensus 112 ~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~-~a~a~~~~~~~~~~~~~~~a----------~~~~er~e~ki~~~ea~ 180 (221)
T PF04012_consen 112 AQVEKLKEQLEELEAKLEELKSKREELKAREN-AAKAQKKVNEALASFSVSSA----------MDSFERMEEKIEEMEAR 180 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCccch----------HHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHH
Q 009446 349 MESIYQLT 356 (534)
Q Consensus 349 ~ksI~eLa 356 (534)
+....+|.
T Consensus 181 a~a~~el~ 188 (221)
T PF04012_consen 181 AEASAELA 188 (221)
T ss_pred HHHHHHhc
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.31 E-value=76 Score=31.20 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 009446 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELR 275 (534)
Q Consensus 213 ~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lK 275 (534)
.++.+-.++-=+++=|-.+|.+.+..|..++..-....+.+++.+...+.+++++++++..+.
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334334555666777777777777777777777777777766666666655444444
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.98 E-value=1.7e+02 Score=30.60 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=35.8
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhh
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNY 301 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~ 301 (534)
|..+|-+.|..+-.++..+...++.++..+.....+|.+...+..++...|.+.+... +..|++=..-+.-
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~---~~~r~~t~~Ei~~ 275 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL---EQCRGFTFKEIEK 275 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCHHHHHH
Confidence 4444445555555555555555555555555555555544444444444444444433 3455554443333
No 65
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=58.81 E-value=82 Score=32.65 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=33.5
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHhhhhc--ceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhH
Q 009446 194 NEIVEELVGQIDATAKSRNDVREQMEQRN--FEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQG 271 (534)
Q Consensus 194 neiveel~~Q~da~~k~rn~aReqmeqrn--y~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~ 271 (534)
+-+++.|=.|++.+.+.|+.-.+-+.+=+ ....=++.+++..++.|..|...-..+.+.|++.-.+-+..+..++.+.
T Consensus 8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 8 DLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777778888777776555443333 1122234566667777777777777777777777766677777666655
Q ss_pred HHHHHHH
Q 009446 272 LELRQLV 278 (534)
Q Consensus 272 ~~lKe~V 278 (534)
..+++.-
T Consensus 88 ~~l~~eE 94 (314)
T PF04111_consen 88 EELDEEE 94 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 66
>smart00721 BAR BAR domain.
Probab=58.27 E-value=1.6e+02 Score=27.46 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=53.1
Q ss_pred hhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHH--HHHhHHHHHH
Q 009446 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKS--LIEKDEKVAE 266 (534)
Q Consensus 189 v~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~--~~eke~ki~e 266 (534)
||.-........++.+..+.|-|+.+|-.|+.-. +.|+ ++.+. -...+ ++.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~-------~kl~------------------~~~~~~~~~~~~-kl~~ 174 (239)
T smart00721 121 FILPLLNFLLGEFKEIKKARKKLERKLLDYDSAR-------HKLK------------------KAKKSKEKKKDE-KLAK 174 (239)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-------HHHH------------------HHHHhccCChhh-hhhh
Confidence 3444444555556777777777777777776321 1111 11110 00123 6666
Q ss_pred HHHhHHHHHHHHHHHHHHh----hchhh---------hchhHHHHhhhHHHHHHHHHHHHHhhc
Q 009446 267 IESQGLELRQLVNEYEDKL----KNLES---------HRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (534)
Q Consensus 267 lerE~~~lKe~V~e~E~kl----k~~e~---------~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (534)
.+.+++..++.-+.+-..+ -.+-+ ...++.-|+.+...+++.|.++..-++
T Consensus 175 ~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 175 AEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7776666666655432222 22222 223333466677777777777766554
No 67
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.21 E-value=1.6e+02 Score=27.47 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=34.2
Q ss_pred hhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh--------------HHHHHHHHHhH
Q 009446 206 ATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK--------------DEKVAEIESQG 271 (534)
Q Consensus 206 a~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~ek--------------e~ki~elerE~ 271 (534)
+|.|+=.+|...+-+ -+-++=++|+.-|.++..| +++|...+-+- -..++.+-.++
T Consensus 36 vTrr~m~~A~~~v~k-------ql~~vs~~l~~tKkhLsqR---Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 36 VTRRSMSDAVASVSK-------QLEQVSESLSSTKKHLSQR---IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455555555543322 1334445666666665544 33333333333 33333333345
Q ss_pred HHHHHHHHHHHHHhhchh
Q 009446 272 LELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 272 ~~lKe~V~e~E~klk~~e 289 (534)
..+...|.-||+|+..++
T Consensus 106 ~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 106 DSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555555554443
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.01 E-value=4.2e+02 Score=32.26 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHh----HHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc-c---chhHHH
Q 009446 31 RFREVLAELNRERQAREAAENSAT----ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSN-D---KLSTEI 102 (534)
Q Consensus 31 ~~~~l~ael~~er~~r~aae~s~~----e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~-~---~~s~~l 102 (534)
++..+.-|+..=..++.+++.-+- |++..-.||--+.++.--||||.-+-=+ +|+.|-+.|-.. . .+..+.
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~-~L~nk~~~lt~~~~q~~tkl~e~ 192 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE-DLHDKNEELNEFNMEFQTKLAEA 192 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH-HHhhhhhHHhHHHHHHHHHHHHH
Confidence 344444444444445666665444 4445555666666666667777665544 477766655432 1 233455
Q ss_pred HHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCc
Q 009446 103 AEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGL 182 (534)
Q Consensus 103 ~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl 182 (534)
...|++-.+..+||++.+.+-|. ++++ .++ .+-+..+|-.--.-|.+-.+-++
T Consensus 193 ~~en~~le~k~~k~~e~~~~nD~-~sle--~~~-~q~~tq~vl~ev~QLss~~q~lt----------------------- 245 (1265)
T KOG0976|consen 193 NREKKALEEKLEKFKEDLIEKDQ-KSLE--LHK-DQENTQKVLKEVMQLSSQKQTLT----------------------- 245 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchH-HHHH--HHH-HHHHHHHHHHHHHHHHHhHhhhh-----------------------
Confidence 67788889999999998887443 2221 111 12222333222222222222111
Q ss_pred hhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh--
Q 009446 183 PAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK-- 260 (534)
Q Consensus 183 ~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~ek-- 260 (534)
+ ++-|--.++|.+--..+.+|-=-+--.|.+-.|--..=|.||-|--+--+.+++ +.|.++.+.-
T Consensus 246 -p-----~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeL-------d~lkqt~t~a~g 312 (1265)
T KOG0976|consen 246 -P-----LRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEEL-------DTLKQTRTRADG 312 (1265)
T ss_pred -h-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHhhc
Confidence 1 122222334444334444443333333444444444445555555554444333 2222222111
Q ss_pred ----------------HHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHH
Q 009446 261 ----------------DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIK 314 (534)
Q Consensus 261 ----------------e~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~ 314 (534)
-..++.+.-++.+-|-+++.+++|+.+||-+|.++....-++...++-+...++
T Consensus 313 dseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elq 382 (1265)
T KOG0976|consen 313 DSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQ 382 (1265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 233444555666666777777777777777777666555444444443333333
No 69
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=57.98 E-value=1.2e+02 Score=27.86 Aligned_cols=57 Identities=30% Similarity=0.331 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHhhHhHHHHHHhhhh
Q 009446 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL---EAQAKELSHRMKRIEELEEKERIA 520 (534)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~---E~QaKEIa~~~~~IkELEERErva 520 (534)
+|.-+-.++.++..|...=+.++.|+-.|-... ....+++......+++|+.|+-.+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777777788888877766 455688999999999999998765
No 70
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=57.37 E-value=58 Score=31.03 Aligned_cols=66 Identities=29% Similarity=0.376 Sum_probs=37.4
Q ss_pred hHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHH
Q 009446 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (534)
Q Consensus 232 LEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~d 297 (534)
....|..|+.+++.-...+.+|+-.+.+|..-+..+.-|+..|.=.+..+|.+++.++.-+.-|++
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555556666666667777777777755544444
No 71
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.52 E-value=1.8e+02 Score=28.20 Aligned_cols=106 Identities=22% Similarity=0.434 Sum_probs=53.5
Q ss_pred hHHHHHHHhhhhhhhh--------hhhHHHHHhhhhcceeeeeehhhHHHhh-hchHHHhhhhhhHHHHHHHHHHhHHHH
Q 009446 194 NEIVEELVGQIDATAK--------SRNDVREQMEQRNFEIAIEVSELEATIS-GLREEVAKKSSFIENLEKSLIEKDEKV 264 (534)
Q Consensus 194 neiveel~~Q~da~~k--------~rn~aReqmeqrny~iAIEVSqLEa~is-~lr~eva~k~s~~e~l~k~~~eke~ki 264 (534)
+.+.+||+||+-.--. =||+.+.-+.. | ....+.++. |.|.-+.. + ....+.+.+|
T Consensus 65 ~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~--y-----~~l~~s~~~f~~rk~l~~-----e---~~~~~l~~~i 129 (189)
T PF10211_consen 65 SQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDA--Y-----QTLYESSIAFGMRKALQA-----E---QGKQELEEEI 129 (189)
T ss_pred HHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHH
Confidence 4567999999987544 44554443332 2 233444443 33332221 1 1123344455
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhchh--------hhchhHHHHhhhHHHHHHHHHHHHH
Q 009446 265 AEIESQGLELRQLVNEYEDKLKNLE--------SHRPLLVDQLNYVSKIHDQVDDIIK 314 (534)
Q Consensus 265 ~elerE~~~lKe~V~e~E~klk~~e--------~~r~lL~dql~~v~~ihd~L~~vi~ 314 (534)
+.++.+...|+..+.++..+...++ ...+..-+.+..+.....+|.+-++
T Consensus 130 ~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 130 EELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555544444443222 3345556667777766666665544
No 72
>PF13166 AAA_13: AAA domain
Probab=56.06 E-value=3.2e+02 Score=30.27 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=24.8
Q ss_pred hHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 009446 184 AVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQ 220 (534)
Q Consensus 184 avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeq 220 (534)
.-....+...|..+++.=..++.-.+..+.++.....
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~ 402 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWL 402 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777777777777777777655543
No 73
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=55.97 E-value=1.9e+02 Score=30.07 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHhHHH----------HHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcc
Q 009446 27 FSVERFREVLAELNRERQAREAAENSATELS----------EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSND 96 (534)
Q Consensus 27 ~~~~~~~~l~ael~~er~~r~aae~s~~e~~----------~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~ 96 (534)
.-+.+|+.++.+|+.=...|..-+..+-+.. ...+.++.+-++- |+.-+
T Consensus 192 ~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~~e~lF~~e---------------------L~kf~ 250 (339)
T cd09238 192 SIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDALFKEE---------------------LKKYD 250 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhhhHHHHHHH---------------------HHHHh
Confidence 4478899999999988888877665553322 2223333333332 33355
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHhh----hhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhh---hhcccCCCCCCC
Q 009446 97 KLSTEIAEVNIAKDEVVKQLDEVTK----ARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEK---ISGKVSNFKNFS 169 (534)
Q Consensus 97 ~~s~~l~~v~~~~de~~k~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ek---is~k~s~~k~f~ 169 (534)
.+.+.|.+-...-+.+.+++..+-. .+++ ...+++-+...+.|-.+..+ |...+.--..
T Consensus 251 ~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~------------~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~k-- 316 (339)
T cd09238 251 SVREAVSKNISSQDDLLSRLRALNEKFSQIFDV------------EGWRAATESHATQIRAAVAKYRELREGMEEGLR-- 316 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------chhHHHHHHHHHHHHHHHHHHHHHHHchHHHHH--
Confidence 5555555544444445555543322 2222 11223333444555544433 2332222223
Q ss_pred CCCCCCCccccCchhHHHHhhhchhHHH
Q 009446 170 AGGLPRSQKYTGLPAVVYGVIKRTNEIV 197 (534)
Q Consensus 170 ~~~lP~SqKYtGl~avaygv~KR~neiv 197 (534)
-|++|.-++-++-+.+.+.|
T Consensus 317 --------FY~dL~~~~~~l~~~~~~fv 336 (339)
T cd09238 317 --------FYSGFQEAVRRLKQECEDFV 336 (339)
T ss_pred --------HHHHHHHHHHHHHHHHHHHH
Confidence 38899888888887777766
No 74
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=55.94 E-value=2.2e+02 Score=28.25 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 009446 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKE 517 (534)
Q Consensus 456 EV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEERE 517 (534)
+-.+|+..|.+.+.....++.+||-.|.++..-+-.=-.+...-.+-+.+...++++|.+.-
T Consensus 175 ~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 175 ENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888899999999999999999998865544433344444444444444455554443
No 75
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=54.97 E-value=74 Score=35.19 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=28.5
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V 278 (534)
+.+.|..+..-.+.+.+|...++.-++.+..++..+...++++..+.+..
T Consensus 78 L~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~ 127 (514)
T TIGR03319 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEEL 127 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544455566666666666666666666665555554444433
No 76
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.93 E-value=64 Score=28.51 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=8.0
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 009446 251 ENLEKSLIEKDEKVAEIES 269 (534)
Q Consensus 251 e~l~k~~~eke~ki~eler 269 (534)
+.|...+...+.++..+|.
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~ 56 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALET 56 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444
No 77
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.48 E-value=91 Score=28.89 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=15.3
Q ss_pred hhhhhhHHHHHHHHH--HhHHHHHHHHHhHHHHHHHHHHH
Q 009446 244 AKKSSFIENLEKSLI--EKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 244 a~k~s~~e~l~k~~~--eke~ki~elerE~~~lKe~V~e~ 281 (534)
..-.+++-+|...++ +-...|.+++.|...+..++..+
T Consensus 96 k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 96 KSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444332 22344444444444444444433
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=54.39 E-value=3.7e+02 Score=30.50 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=6.4
Q ss_pred hhhhhhhhhhhc
Q 009446 149 HMLVTGIEKISG 160 (534)
Q Consensus 149 ~mL~sg~ekis~ 160 (534)
..|-..++.+.|
T Consensus 422 ~eL~~~l~~L~~ 433 (880)
T PRK03918 422 KELKKAIEELKK 433 (880)
T ss_pred HHHHHHHHHHHh
Confidence 345555555554
No 79
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=53.85 E-value=64 Score=30.47 Aligned_cols=56 Identities=38% Similarity=0.465 Sum_probs=42.8
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDK 284 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~k 284 (534)
++.+-..+.+|..|+..=+++-++|.+.+-.+.++|++|+.-...+...+...|..
T Consensus 61 l~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 61 LEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444445556777777788999999999999999999988777777777776555
No 80
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.96 E-value=3.2e+02 Score=29.24 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHH
Q 009446 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKI 305 (534)
Q Consensus 252 ~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~i 305 (534)
.+.+.....+.++..++.++..++..+..|+..++.++.....+-..+..+...
T Consensus 224 ~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 224 ELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444555555555555555555555554444444444444433
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=52.85 E-value=4e+02 Score=30.45 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhh
Q 009446 269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (534)
Q Consensus 269 rE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~v 316 (534)
.++..||+.+..++..+..-+.+.-+|.+-|..+..+.|..-.-+...
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~a 330 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQA 330 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355567777777777776667888888889988888887766555443
No 82
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.62 E-value=3.8e+02 Score=30.08 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.5
Q ss_pred hhhHHHHHHHHH
Q 009446 299 LNYVSKIHDQVD 310 (534)
Q Consensus 299 l~~v~~ihd~L~ 310 (534)
++++.++...|.
T Consensus 482 ~~~~~~~~~~l~ 493 (650)
T TIGR03185 482 ITIADKAKKTLK 493 (650)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 83
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=52.29 E-value=1.2e+02 Score=27.37 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=44.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 009446 196 IVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (534)
Q Consensus 196 iveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~el 267 (534)
.++.++.+.+. .+.-+..++.+-..|-++|=..-.++..+..+|.++..+......|..+..++..+...+
T Consensus 18 ~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 18 KLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554 334555666666777777766667778888888888888888888877777776666544
No 84
>PF13514 AAA_27: AAA domain
Probab=52.19 E-value=4.9e+02 Score=31.21 Aligned_cols=109 Identities=24% Similarity=0.342 Sum_probs=51.3
Q ss_pred CCCCCCCccccCchhHHHHhhhchhHHHHH------HHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHh---hhch
Q 009446 170 AGGLPRSQKYTGLPAVVYGVIKRTNEIVEE------LVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI---SGLR 240 (534)
Q Consensus 170 ~~~lP~SqKYtGl~avaygv~KR~neivee------l~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~i---s~lr 240 (534)
+.|+|.+ |+-.-+.+.+-..+.+. .-..++.....+..++..+...=..... ...|.+.+ ..++
T Consensus 593 ~~g~p~~------p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-~~~l~~~l~~a~~~~ 665 (1111)
T PF13514_consen 593 AAGLPLS------PAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGP-AEELAALLEEAEALL 665 (1111)
T ss_pred hcCCCCC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHH
Confidence 5567753 65555666665554432 2233444445555555555544333333 22232222 2233
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 241 ~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
++........+.++..+..-+..+.+.+++...+.+.+.......
T Consensus 666 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 710 (1111)
T PF13514_consen 666 EEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEW 710 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344344444455555555555555555555555555554444433
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.12 E-value=5.5e+02 Score=31.84 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 264 VAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 264 i~elerE~~~lKe~V~e~E~klk~~e 289 (534)
...++.+...+.+.+.+++..+..++
T Consensus 553 ~~~l~~~~~~l~e~~~el~~e~~~~e 578 (1353)
T TIGR02680 553 RAALRLAEEVLEEERDALRTERERLE 578 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444556667777777777665555
No 86
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=51.08 E-value=4.6e+02 Score=30.58 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=49.9
Q ss_pred hcceeeeeehhhHHHhhhch--HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 009446 221 RNFEIAIEVSELEATISGLR--EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (534)
Q Consensus 221 rny~iAIEVSqLEa~is~lr--~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E 282 (534)
++.++||+--+.+..+-... +|++-|.+++.-++..+..-..+|-.+|+|++.|+.....--
T Consensus 206 ~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 206 SSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677777777776664443 779999999999999999999999999999999998876643
No 87
>PRK12704 phosphodiesterase; Provisional
Probab=50.81 E-value=2.2e+02 Score=31.75 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=12.0
Q ss_pred hhhhhHHhhhhhhhhhhhhhhhhc
Q 009446 137 KDGLRSEIENSAHMLVTGIEKISG 160 (534)
Q Consensus 137 ~~~l~~ei~~s~~mL~sg~ekis~ 160 (534)
.+.++.+++....=...-+++|+|
T Consensus 126 Le~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 126 LEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555444444455555554
No 88
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=50.72 E-value=2.2e+02 Score=31.71 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=7.9
Q ss_pred hhchHHHhhhh
Q 009446 237 SGLREEVAKKS 247 (534)
Q Consensus 237 s~lr~eva~k~ 247 (534)
...|.|||+.+
T Consensus 253 dp~rreia~~~ 263 (514)
T TIGR03319 253 DPVRREIARMA 263 (514)
T ss_pred chHHHHHHHHH
Confidence 44688888876
No 89
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.39 E-value=70 Score=30.47 Aligned_cols=55 Identities=29% Similarity=0.490 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHh
Q 009446 245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299 (534)
Q Consensus 245 ~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql 299 (534)
..+.....+++.+..+...|+.++.++..|+.+|..++..++....-.-.|-|-+
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666666666666666666666666644443333333333
No 90
>PRK14140 heat shock protein GrpE; Provisional
Probab=50.09 E-value=1.8e+02 Score=28.79 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=9.0
Q ss_pred HHHhHhhhhhHHH
Q 009446 342 IRASLAGMESIYQ 354 (534)
Q Consensus 342 lK~sl~~~ksI~e 354 (534)
++.+..|+++|+.
T Consensus 113 ~~~i~~Gv~mi~k 125 (191)
T PRK14140 113 TKSLLKGVEMVHR 125 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3556778877776
No 91
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.96 E-value=1e+02 Score=34.36 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCc
Q 009446 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (534)
Q Consensus 247 ~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~ 321 (534)
+-.+|+++--+-.-+....++-..+--||-.++++++...-+.++=..|.+|++|.-+.|..+-.+++.+-.++-
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~eke 370 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKE 370 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345556554444444455555555555666667777666666677778889999999999999999999776664
No 92
>PRK04406 hypothetical protein; Provisional
Probab=49.92 E-value=1.1e+02 Score=26.03 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 009446 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKE 517 (534)
Q Consensus 465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEERE 517 (534)
++++..+..-|.+|.-.+.=.=--++.|-..+-.|-++|...+.+++.|=+|-
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777778888877777777778888888899999999998888885543
No 93
>PRK09039 hypothetical protein; Validated
Probab=48.67 E-value=2.1e+02 Score=30.08 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=41.2
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHH-HHHHHHHhh
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQL-VNEYEDKLK 286 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~-V~e~E~klk 286 (534)
|.-|-+-|..||..++.=.+.++..+....+...+|..+..++...... |.++...-.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~ 197 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRS 197 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456666777777778888888888888888888888888877666533 555544433
No 94
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=48.37 E-value=4.3e+02 Score=29.46 Aligned_cols=68 Identities=26% Similarity=0.340 Sum_probs=47.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhh
Q 009446 68 HESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENS 147 (534)
Q Consensus 68 ~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s 147 (534)
....+.+-||.||-.-||-||- +| .|.||-..|+|++--|. .+.+++++.-.
T Consensus 331 areaklqaec~rQ~qlaLEEKa-aL-------------rkerd~L~keLeekkre--------------leql~~q~~v~ 382 (442)
T PF06637_consen 331 AREAKLQAECARQTQLALEEKA-AL-------------RKERDSLAKELEEKKRE--------------LEQLKMQLAVK 382 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH-------------HHHHHHHHHHHHHHHHH--------------HHHHHHHHHhh
Confidence 3445899999999999999994 33 46677777777774444 56677777777
Q ss_pred hhhhhhhhhhhhcccCCCC
Q 009446 148 AHMLVTGIEKISGKVSNFK 166 (534)
Q Consensus 148 ~~mL~sg~ekis~k~s~~k 166 (534)
.+-|-+-|. +|..|..
T Consensus 383 ~saLdtCik---aKsq~~~ 398 (442)
T PF06637_consen 383 TSALDTCIK---AKSQPMT 398 (442)
T ss_pred hhHHHHHHH---hccCCCC
Confidence 776766653 5555553
No 95
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=47.75 E-value=1.6e+02 Score=32.30 Aligned_cols=137 Identities=12% Similarity=0.260 Sum_probs=31.9
Q ss_pred hhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCC-CCCCCCCCc-------------cccCchhHH--HH--------
Q 009446 133 VTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNF-SAGGLPRSQ-------------KYTGLPAVV--YG-------- 188 (534)
Q Consensus 133 ~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f-~~~~lP~Sq-------------KYtGl~ava--yg-------- 188 (534)
.++-..+|+.+|.....+++.-+..+....++.-.. ++.|=|.++ .+.-+..+= .+
T Consensus 90 l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRreLavLRQl~~~ 169 (424)
T PF03915_consen 90 LSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRRELAVLRQLYSE 169 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 444566788888888877765555554444432211 111111111 111111110 12
Q ss_pred hhhchhHHHHHHHhhhhhh-----hhhhhHHHHHh-------hhhcceeeeeehhhHHHhhhchHHHhhhhh-----hHH
Q 009446 189 VIKRTNEIVEELVGQIDAT-----AKSRNDVREQM-------EQRNFEIAIEVSELEATISGLREEVAKKSS-----FIE 251 (534)
Q Consensus 189 v~KR~neiveel~~Q~da~-----~k~rn~aReqm-------eqrny~iAIEVSqLEa~is~lr~eva~k~s-----~~e 251 (534)
+-+.+.+.+..+..|+.+- .-+-+-.|-.| ..+...+-=-|..|+..|-.||.+|+.|-. -++
T Consensus 170 ~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle 249 (424)
T PF03915_consen 170 FQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLE 249 (424)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHH
Confidence 2234556666666666431 11111123233 333333333478899999999999988743 455
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 009446 252 NLEKSLIEKDEKVAEIES 269 (534)
Q Consensus 252 ~l~k~~~eke~ki~eler 269 (534)
.+.+.+..-...|..++.
T Consensus 250 ~v~kdi~~a~~~L~~m~~ 267 (424)
T PF03915_consen 250 TVAKDISRASKELKKMKE 267 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554444
No 96
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.74 E-value=70 Score=38.87 Aligned_cols=73 Identities=29% Similarity=0.351 Sum_probs=58.1
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhh
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~ 300 (534)
||++.+..|+||--.++......+++.+++...+.++.-++.++..+.-++.++.-++.+.+...+=|-+.++
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n 749 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMN 749 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888776666666666666666666655555555544
No 97
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.94 E-value=61 Score=37.33 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=38.2
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhch
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRP 293 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~ 293 (534)
|++.|++-+.++|.++-. ..+ ..+-+..++.+|..|+++..+-+.+|++|+.+|..++.-+.
T Consensus 451 eie~L~~~l~~~~r~~~~--~~~--~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 451 EIEKLESELERFRREVRD--KVR--KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHH--HHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555441 111 23345566788888888888888888888888865554444
No 98
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=45.69 E-value=43 Score=29.47 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=42.1
Q ss_pred eeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh---HHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 225 IAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK---DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 225 iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~ek---e~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
||-|+.-||..|+..|..+. .+++.+--. ...-..+|+|+..++..+..+|.+|+.|.
T Consensus 3 V~~eId~lEekl~~cr~~le-------~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLE-------AVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------HHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 56677788888887777653 333333322 23334588999999999999999998888
No 99
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=45.58 E-value=1.6e+02 Score=27.89 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=36.2
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH---hHHHHHHHHHHHHHHhhchh
Q 009446 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIES---QGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 238 ~lr~eva~k~s~~e~l~k~~~eke~ki~eler---E~~~lKe~V~e~E~klk~~e 289 (534)
..+..+....+...+|..+|.+++..|..|.. .+++|+..+..|..+.+..+
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~ 71 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAK 71 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 35555566666777777777777777777777 77777777777776665333
No 100
>PRK14141 heat shock protein GrpE; Provisional
Probab=45.56 E-value=1.6e+02 Score=29.46 Aligned_cols=77 Identities=8% Similarity=0.130 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccchhH
Q 009446 261 DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEE 340 (534)
Q Consensus 261 e~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee 340 (534)
..++.-+.-|.+++|.+...=-.. .+.--...-+..+-.|.|.|...+..+..+.. .+...
T Consensus 51 kd~~lR~~Ae~eN~RKR~~kE~e~-----~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~--------------~~~~~ 111 (209)
T PRK14141 51 KDRMLRLAAEMENLRKRTQRDVAD-----ARAYGIAGFARDMLSVSDNLRRALDAIPAEAR--------------AAADA 111 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHhHHHHHHhccccccc--------------cccch
Confidence 334444444566666655441111 11111222344455556666665554433221 01234
Q ss_pred HHHHhHhhhhhHHHHH
Q 009446 341 NIRASLAGMESIYQLT 356 (534)
Q Consensus 341 ~lK~sl~~~ksI~eLa 356 (534)
.++.+..|+++|+..-
T Consensus 112 ~~~~l~eGv~mi~k~l 127 (209)
T PRK14141 112 GLKALIEGVEMTERAM 127 (209)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5677888998888743
No 101
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.61 E-value=2e+02 Score=24.44 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhc
Q 009446 250 IENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (534)
Q Consensus 250 ~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (534)
.+.|+..+..-=..|..|..|++.||+....+......|...+.-|-. --..+.++|..++..++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~---e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ---ERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Confidence 344444444445567777778888888877776666555555544443 23445666666666655
No 102
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=44.10 E-value=2.3e+02 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=17.7
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHH
Q 009446 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKV 264 (534)
Q Consensus 230 SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki 264 (534)
..|...|..++.++..+-..++.+...+..+...+
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555544433
No 103
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.49 E-value=3.3e+02 Score=26.72 Aligned_cols=105 Identities=24% Similarity=0.384 Sum_probs=69.7
Q ss_pred CCCCCccccCch--------hHHHHhhhchhHHHHHHHh-hhhhhh---hhhhHHHHHhhhhcceeeeeehhhHHHhhhc
Q 009446 172 GLPRSQKYTGLP--------AVVYGVIKRTNEIVEELVG-QIDATA---KSRNDVREQMEQRNFEIAIEVSELEATISGL 239 (534)
Q Consensus 172 ~lP~SqKYtGl~--------avaygv~KR~neiveel~~-Q~da~~---k~rn~aReqmeqrny~iAIEVSqLEa~is~l 239 (534)
.+|-+.-|.+|. .+|.|..-=.-.+|+.+-+ ++|... -+-...=..+|..+|.+.-=-|.|.- +-.+
T Consensus 23 ~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k-LL~l 101 (190)
T PF05266_consen 23 KVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNK-LLSL 101 (190)
T ss_pred cCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHH-HHHH
Confidence 367777777776 5677777777777777754 444321 12233455678999988776777766 3467
Q ss_pred hHHHhhhhhhHHHHHHHHHHh-------HHHHHHHHHhHHHHHHH
Q 009446 240 REEVAKKSSFIENLEKSLIEK-------DEKVAEIESQGLELRQL 277 (534)
Q Consensus 240 r~eva~k~s~~e~l~k~~~ek-------e~ki~elerE~~~lKe~ 277 (534)
+++-.+.......+++.+.++ +.+|+++++.+.+|++.
T Consensus 102 k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 102 KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888 55555555544444444
No 104
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=43.47 E-value=3.3e+02 Score=26.78 Aligned_cols=154 Identities=17% Similarity=0.269 Sum_probs=98.5
Q ss_pred hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHh
Q 009446 236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKI 315 (534)
Q Consensus 236 is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~ 315 (534)
|..++.++-....-++.++..+...+.+....+.++..|..+|.-+|..|...+.+-.-....|..+.+-.+......+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888889999999999999999999999999999999777766666666666666666665555555
Q ss_pred hcCCCccccccccccCCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHH---HHhhHHHHhhHHHHHHHHHHhhhhHH
Q 009446 316 VDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDL---VQKKSREVKSLNEAVGQLVKEKEHIV 392 (534)
Q Consensus 316 vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~---~E~k~kE~k~Le~sV~~L~kEnedI~ 392 (534)
+...... ..+.+ -+++.-++..-..+...-.-..+|..|+... ++.-......+++.+..|..+-..++
T Consensus 83 lE~r~~~---~eeri-----~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 83 LENREQS---DEERI-----EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHH---HHHHH-----HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 5432210 00000 0233333333333333333333555554432 33444555577788888888888888
Q ss_pred HHHHH
Q 009446 393 SLLRS 397 (534)
Q Consensus 393 sLLRs 397 (534)
+=|++
T Consensus 155 ~~lk~ 159 (237)
T PF00261_consen 155 NNLKS 159 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77774
No 105
>PRK00106 hypothetical protein; Provisional
Probab=43.44 E-value=3.9e+02 Score=30.28 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=12.9
Q ss_pred hhhhhHHhhhhhhhhhhhhhhhhc
Q 009446 137 KDGLRSEIENSAHMLVTGIEKISG 160 (534)
Q Consensus 137 ~~~l~~ei~~s~~mL~sg~ekis~ 160 (534)
.+..+.+++....-...-+++|+|
T Consensus 141 Lee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 141 IDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555555555555666654
No 106
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.96 E-value=7.6e+02 Score=30.76 Aligned_cols=126 Identities=17% Similarity=0.304 Sum_probs=76.4
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh---hhchhHHHHhhhHHHHHH
Q 009446 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE---SHRPLLVDQLNYVSKIHD 307 (534)
Q Consensus 231 qLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e---~~r~lL~dql~~v~~ihd 307 (534)
-+|+.|.-+-++|....+.+.++...+..++..|...-.+.-.+..-+...|.+++..+ ..||-|.+.--.+..++.
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~ 303 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKK 303 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchh
Confidence 46888888888888888888888888887777776555454455555555555553222 224444443333333333
Q ss_pred HHHHHHHhhcCCCccccccccccCCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 009446 308 QVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE 387 (534)
Q Consensus 308 ~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kE 387 (534)
.|..+ +.=.+=++.-..+...+++..+++++.++-.-..+.+|
T Consensus 304 rl~~~-------------------------------------~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~feke 346 (1141)
T KOG0018|consen 304 RLEEI-------------------------------------EKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKE 346 (1141)
T ss_pred HHHHh-------------------------------------hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 22222334445567777777778887777777777766
Q ss_pred hhhHHH
Q 009446 388 KEHIVS 393 (534)
Q Consensus 388 nedI~s 393 (534)
-+++.-
T Consensus 347 i~~~~q 352 (1141)
T KOG0018|consen 347 IEERSQ 352 (1141)
T ss_pred HHHHHh
Confidence 666543
No 107
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.76 E-value=4e+02 Score=27.51 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 009446 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (534)
Q Consensus 465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELE 514 (534)
-..+.....+|...++.+.+++.+...++.-++.=..++.+....|.+++
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666666665666666666666555
No 108
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=42.45 E-value=3.7e+02 Score=26.96 Aligned_cols=115 Identities=25% Similarity=0.261 Sum_probs=79.7
Q ss_pred hhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcc
Q 009446 144 IENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNF 223 (534)
Q Consensus 144 i~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny 223 (534)
+++|.+=|...++|.-+-+++|+.. +..|. |-+.+.++-|-.+-...-.=+.-|-++++.-|-
T Consensus 88 ~E~sfsdl~~ryek~K~vi~~~k~N----------EE~Lk-------k~~~ey~~~l~~~eqry~aLK~hAeekL~~ANe 150 (207)
T PF05010_consen 88 LEKSFSDLHKRYEKQKEVIEGYKKN----------EETLK-------KCIEEYEERLKKEEQRYQALKAHAEEKLEKANE 150 (207)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHh----------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888877762 11122 222344444433333333334556799999999
Q ss_pred eeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 009446 224 EIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (534)
Q Consensus 224 ~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E 282 (534)
+|+=-.++..+-+.+|+--+-+--.-+.+|+++|..|..... +|-..|++|=
T Consensus 151 ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~-------ELtkICDeLI 202 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENE-------ELTKICDELI 202 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 999888998898988988888888889999999999888887 5555666653
No 109
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=41.75 E-value=5.3e+02 Score=28.60 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=49.0
Q ss_pred cccccCccccCCCC-chhhh--HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHH
Q 009446 10 LSDVEGEIDVQTSS-DEDFS--VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALR 86 (534)
Q Consensus 10 lsdv~~d~~~~~~~-~~~~~--~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r 86 (534)
+|=|.|=+..++|. .+..+ ...|.-+-.+|..=+.-...+|..+.....-+.+-|.++.+.=.|=......+..|..
T Consensus 11 vs~FG~~~~~k~~~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~ 90 (522)
T PF05701_consen 11 VSLFGGSIDWKKHQSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEE 90 (522)
T ss_pred HHHcCCccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545555541 12222 3344455566777777788899999999999999999988876655554444444444
Q ss_pred H
Q 009446 87 E 87 (534)
Q Consensus 87 ~ 87 (534)
+
T Consensus 91 ~ 91 (522)
T PF05701_consen 91 D 91 (522)
T ss_pred h
Confidence 4
No 110
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.57 E-value=1.9e+02 Score=28.52 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Q 009446 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIA 520 (534)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEERErva 520 (534)
..+..-...+..+|.+|...++-++....+|+..+..|.++|+....+|..++.-.+-+
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667778888888888888889999999999999999999999998765543
No 111
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.22 E-value=4.1e+02 Score=31.05 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=89.8
Q ss_pred hhhhhhHHHHHhhhhcceeeeee----hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 009446 207 TAKSRNDVREQMEQRNFEIAIEV----SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (534)
Q Consensus 207 ~~k~rn~aReqmeqrny~iAIEV----SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E 282 (534)
...+|.--|.++|.|-..|-+|+ +++--.+-++-++|-+=+.-++++...++-.-..-..+=..-+.+|+.-+.+|
T Consensus 47 ~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le 126 (655)
T KOG3758|consen 47 SLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLE 126 (655)
T ss_pred hHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 34458888899999877777664 45555566667788888888888866665554333333333334444444443
Q ss_pred HHhhchh--------------------hhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccchhHHH
Q 009446 283 DKLKNLE--------------------SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENI 342 (534)
Q Consensus 283 ~klk~~e--------------------~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~l 342 (534)
-+.+.+. .-....|..++-+..||+.-..++.+..-.+
T Consensus 127 ~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~FF~vL~rvqeIh~~~~~Ll~~~~~~A---------------------- 184 (655)
T KOG3758|consen 127 LRKKIINAFLDNFQLSSEELDLLTESGPIDEDFFKVLDRVQEIHDNCRLLLQTPNQTA---------------------- 184 (655)
T ss_pred HHHHHHHHHHHhcccChHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhccchhh----------------------
Confidence 3333222 1122345556666666666665555544111
Q ss_pred HHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhh--HHHHHHHHHH-hhhhHHHHHHHHhh
Q 009446 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKS--LNEAVGQLVK-EKEHIVSLLRSALS 400 (534)
Q Consensus 343 K~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~--Le~sV~~L~k-EnedI~sLLRsALs 400 (534)
+-++-.|...+.|.--.++.+ ..+....|+. ++.+++.+||-|+.
T Consensus 185 -------------g~eime~M~~~~E~a~erl~r~~qs~e~~~l~~t~~~E~~~il~kA~~ 232 (655)
T KOG3758|consen 185 -------------GLEIMEKMALIQEGAYERLFRWSQSSECRNLTGTDSQEVSPILRKAFV 232 (655)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhhhHhhcCCccccchhhHHHHHHHHH
Confidence 123334444444444444444 2224556664 88899999998876
No 112
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=40.19 E-value=73 Score=29.87 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=38.4
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
++-|.|.|..+|..+...-..+..|+..+..||.+|. .||+.++++...-
T Consensus 75 ~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~-------~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 75 VARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEID-------RLREKLDELNRAN 124 (131)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4557888888888888888889999999999999998 5555555554433
No 113
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.73 E-value=1.2e+02 Score=31.69 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHH
Q 009446 261 DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303 (534)
Q Consensus 261 e~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~ 303 (534)
.+++.+.|.++.+++++|.++-++|.+++..+--|.+.+.++.
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555558888888888888888888888888777654
No 114
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=39.71 E-value=2e+02 Score=27.66 Aligned_cols=52 Identities=31% Similarity=0.494 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Q 009446 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANE 522 (534)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEERErvane 522 (534)
|.+++.+|-+ --+.+|.|++.|+.-++.=-.++.+....+..|+.+++.+-.
T Consensus 11 ie~sK~qIf~---I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~ 62 (159)
T PF05384_consen 11 IESSKEQIFE---IAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQ 62 (159)
T ss_pred HHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444 457788888888888888888888888999999998887654
No 115
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=38.45 E-value=4.1e+02 Score=26.41 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHH-HHHHHHhh
Q 009446 261 DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQ-VDDIIKIV 316 (534)
Q Consensus 261 e~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~-L~~vi~~v 316 (534)
-.....++.++..||..++..-...-.|+.+-.-|-+.+.++..+|+. +..+-..+
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 444555566666666666555444444555666677777888888876 44444333
No 116
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.36 E-value=1.7e+02 Score=27.67 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=46.7
Q ss_pred cCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHH
Q 009446 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIE 259 (534)
Q Consensus 180 tGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~e 259 (534)
||..-..+-+|.|+--++-+++..-+.....+..+...-+.. -....++.++...+++.|.+.+..
T Consensus 107 sGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~--------------~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 107 SGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAA--------------EKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhhhHHHHHHHHHHHHH
Confidence 598888999999999999888877766555554443321111 001445556666777777666666
Q ss_pred hHHHHHHH
Q 009446 260 KDEKVAEI 267 (534)
Q Consensus 260 ke~ki~el 267 (534)
++..+..+
T Consensus 173 ~~~~~~~L 180 (192)
T PF05529_consen 173 KEKEIEAL 180 (192)
T ss_pred HHHHHHHH
Confidence 55555533
No 117
>PRK14161 heat shock protein GrpE; Provisional
Probab=38.12 E-value=3.9e+02 Score=26.05 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 253 l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
+++.+.--.++|.+++.++.+++++.-.+-+...|+.
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555544444444433
No 118
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=37.15 E-value=1.9e+02 Score=30.02 Aligned_cols=59 Identities=24% Similarity=0.452 Sum_probs=52.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 009446 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (534)
Q Consensus 456 EV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELE 514 (534)
|+.++=.+|...+++.+.+|.+++++++...+|..-|-.-++.-..++..+.+|.+-|.
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666778889999999999999999999999999999999999999999998887664
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.96 E-value=2.9e+02 Score=28.37 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH-----------------------hHHHHHHHHHHHHHH
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES-----------------------QGLELRQLVNEYEDK 284 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~eler-----------------------E~~~lKe~V~e~E~k 284 (534)
++-.+.+-++++++.+..+--..++++.+++.-+..|.++.. |+..++++...++.+
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhchhhhchhHHHHhhhHHHHHHHHHHHH
Q 009446 285 LKNLESHRPLLVDQLNYVSKIHDQVDDII 313 (534)
Q Consensus 285 lk~~e~~r~lL~dql~~v~~ihd~L~~vi 313 (534)
|.++.....-|-+++..+..=|..+.+-+
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 120
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.93 E-value=1.6e+02 Score=30.69 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=36.4
Q ss_pred HHHHHHHhHHHHHHH---HHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHH
Q 009446 253 LEKSLIEKDEKVAEI---ESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIK 314 (534)
Q Consensus 253 l~k~~~eke~ki~el---erE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~ 314 (534)
|+.-..+|++-+.++ +-++++.++++.+++.+..-|++.++.|. +-|..+++++.++..
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~---~ev~~L~~r~~ELe~ 205 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP---GEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHhcc
Confidence 333344554444433 33777888899898888877776666554 345566666655543
No 121
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.62 E-value=2.5e+02 Score=23.33 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHhhHhHHHHHHhhhhhc
Q 009446 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKEL-SHRMKRIEELEEKERIANE 522 (534)
Q Consensus 465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEI-a~~~~~IkELEERErvane 522 (534)
.+.+..++..+......+.....-...++...+..-..| ......|.-|++++..+-.
T Consensus 6 ~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~ 64 (127)
T smart00502 6 EELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLE 64 (127)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444 2334444555555444433
No 122
>PRK10698 phage shock protein PspA; Provisional
Probab=36.48 E-value=4.4e+02 Score=26.14 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=50.4
Q ss_pred hhhHHHhhhchHHHhhhhh-hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHH
Q 009446 230 SELEATISGLREEVAKKSS-FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQ 308 (534)
Q Consensus 230 SqLEa~is~lr~eva~k~s-~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~ 308 (534)
.+-+.++..=++++|+.+= .-......+..-+..+......+..|+..+..++.++..++.++..|.-.......- ..
T Consensus 73 ~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~-~~ 151 (222)
T PRK10698 73 EKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS-RD 151 (222)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4455666666777776621 111122223333444444444666778888888888888888888887766665543 33
Q ss_pred HHHHHHhhcC
Q 009446 309 VDDIIKIVDD 318 (534)
Q Consensus 309 L~~vi~~vd~ 318 (534)
+...+..++.
T Consensus 152 ~~~~~~~~~~ 161 (222)
T PRK10698 152 VRRQLDSGKL 161 (222)
T ss_pred HHHHHhCCCc
Confidence 4455544443
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.32 E-value=5.3e+02 Score=27.03 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=39.9
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhh
Q 009446 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (534)
Q Consensus 230 SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~ 300 (534)
+++.....++-.+|.+--.-++.+.....+.+++|.++..++..++..|..++.-+ .++..+|-+++-
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~raR 108 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44444454555555555555666666666666666666666666666666665555 456666666543
No 124
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.94 E-value=4.1e+02 Score=25.65 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=30.7
Q ss_pred hhHHhhhhhhhhhhhhhhhhcc--------cCC--CCCCCC--CCCCCCccccCch----hHHHHhhhchhHHHH
Q 009446 140 LRSEIENSAHMLVTGIEKISGK--------VSN--FKNFSA--GGLPRSQKYTGLP----AVVYGVIKRTNEIVE 198 (534)
Q Consensus 140 l~~ei~~s~~mL~sg~ekis~k--------~s~--~k~f~~--~~lP~SqKYtGl~----avaygv~KR~neive 198 (534)
+...+......++.-+-.|-.- -++ ...|+- .+||.+..+++.| +.|+|.+-..=-++-
T Consensus 138 l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~~~~~~~~~I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls 212 (302)
T PF10186_consen 138 LQSQLARRRRQLIQELSEIFPIEQVSSPRRPSDSSSSEYTICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLS 212 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecccccCCCCCCCCeeecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5555666666555543333222 111 344433 3577887777765 466776554433333
No 125
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=34.98 E-value=2e+02 Score=23.65 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Q 009446 474 EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKER 518 (534)
Q Consensus 474 EI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEEREr 518 (534)
-|++|+-.+.-.---++.|-..+..|.++|.....+++.|.+|=+
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555566677777788888888877777776644
No 126
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=34.77 E-value=3.5e+02 Score=24.47 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=52.6
Q ss_pred CchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh
Q 009446 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK 260 (534)
Q Consensus 181 Gl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~ek 260 (534)
||-|+++.- ...++++++||+.=..+. ++++..++.---.+- ..++..+...++.. +..|+.|++-+.++
T Consensus 13 GLGa~a~~~-ek~~k~~~~LVkkGe~~~---ee~k~~~~e~~~~~~---e~~~~~~~~~~~~~---~~~~~~le~~~~~~ 82 (118)
T TIGR01837 13 GIGALARVQ-EEGSKFFNRLVKEGELAE---KRGQKRFDESVDAAR---EEVKTALEQTRDQV---QRNWDKLEKAFDER 82 (118)
T ss_pred HHhHHHHHH-HHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHH---HHHhhhHHHHHHHH---HhhHHHHHHHHHHH
Confidence 666666653 678999999998755443 455554432100000 22222232222222 23345555545443
Q ss_pred HHHHH-HH----HHhHHHHHHHHHHHHHHhhchh
Q 009446 261 DEKVA-EI----ESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 261 e~ki~-el----erE~~~lKe~V~e~E~klk~~e 289 (534)
=..+. .+ ..|+..|+.+|+.|+.++..+.
T Consensus 83 v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 83 VEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 11 1288899999999998886553
No 127
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.66 E-value=2.5e+02 Score=22.72 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=48.7
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhHHHHhhhHHHHHHHHH
Q 009446 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQVD 310 (534)
Q Consensus 239 lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e-~~r~lL~dql~~v~~ihd~L~ 310 (534)
+.+++-++...+.++.. .+|...|.++++.+.+..+.+..+|.+++++- ..|.-+...+..+..-.+.|-
T Consensus 4 l~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 4 LTAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554432 58889999999999999999999999999887 666666666666655444443
No 128
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.66 E-value=2.3e+02 Score=23.59 Aligned_cols=52 Identities=31% Similarity=0.369 Sum_probs=34.0
Q ss_pred hhhHHHhh---hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446 230 SELEATIS---GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 230 SqLEa~is---~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~ 281 (534)
|.|+|-|- .+.+|+-+=-+-.-.+++.|.+-+.+..+|+.++..|++.++++
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555541 34455544444455667777777888888888888888887764
No 129
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.20 E-value=88 Score=29.83 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=41.7
Q ss_pred HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 009446 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYED 283 (534)
Q Consensus 234 a~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~ 283 (534)
+....||+++..|..+...|.-+-.-.+++|..+.+|+..|+....+.-.
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889999999999887778899999999999999998776433
No 130
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=34.06 E-value=2.5e+02 Score=29.38 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=46.1
Q ss_pred hHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhh
Q 009446 212 NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESH 291 (534)
Q Consensus 212 n~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~ 291 (534)
|+-|.||-++ |.|+|+-.++.+|.+ +.+-..-+++..-..+.+++++ .+|+...-+..+++.++..
T Consensus 166 ~d~rnq~l~~------~i~~l~~~l~~~~~~-~~~~~~~~~~~~~~~e~~~r~~-------~lr~~~~~l~~el~~aK~~ 231 (264)
T PF07246_consen 166 NDRRNQILSH------EISNLTNELSNLRND-IDKFQEREDEKILHEELEARES-------GLRNESKWLEHELSDAKED 231 (264)
T ss_pred hhhHHHHHHH------HHHHhhhhHHHhhch-hhhhhhhhhHHHHHHHHHHhHh-------hhHHHHHHHHHHHHHHHHH
Confidence 4778888885 478889999999888 3333333444443444444444 5666666666777666644
Q ss_pred chhHHHHhhhH
Q 009446 292 RPLLVDQLNYV 302 (534)
Q Consensus 292 r~lL~dql~~v 302 (534)
-..|-..++..
T Consensus 232 ~~~~~~~~~~~ 242 (264)
T PF07246_consen 232 MIRLRNDISDF 242 (264)
T ss_pred HHHHHhcccch
Confidence 44444443333
No 131
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.99 E-value=1.7e+02 Score=24.52 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=21.7
Q ss_pred hHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 009446 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (534)
Q Consensus 232 LEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e 280 (534)
+|+-|..|-.-+|----.++.|.+-++.-...|..+.+.+..|.+++.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344433333334333444444444444444555444444444444444
No 132
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=33.87 E-value=2.4e+02 Score=28.78 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhh
Q 009446 272 LELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (534)
Q Consensus 272 ~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~v 316 (534)
.-+|+++.+||.+++.+......|-..++.+.+=--.||+=|+-|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666555555555555555444555544444
No 133
>PRK02119 hypothetical protein; Provisional
Probab=33.68 E-value=1.7e+02 Score=24.69 Aligned_cols=9 Identities=0% Similarity=0.095 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 009446 261 DEKVAEIES 269 (534)
Q Consensus 261 e~ki~eler 269 (534)
...|..+.+
T Consensus 36 q~~id~L~~ 44 (73)
T PRK02119 36 QFVIDKMQV 44 (73)
T ss_pred HHHHHHHHH
Confidence 333333333
No 134
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.17 E-value=2e+02 Score=33.34 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHH
Q 009446 270 QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHD 307 (534)
Q Consensus 270 E~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd 307 (534)
|+..+..+|..|+-+|.+-......|-.-|..+.+|+.
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66667777777777776666666666666666666554
No 135
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.87 E-value=1.9e+02 Score=25.24 Aligned_cols=44 Identities=30% Similarity=0.245 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHH
Q 009446 470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEEL 513 (534)
Q Consensus 470 ~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkEL 513 (534)
.+..+|.+||++|..+-..++-.+..-++=..+=.-+..||..|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887777777777766666777777888877
No 136
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=32.79 E-value=5.5e+02 Score=26.19 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=58.7
Q ss_pred hchhHHHHHHHhhhhhhhhhhh---HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 009446 191 KRTNEIVEELVGQIDATAKSRN---DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (534)
Q Consensus 191 KR~neiveel~~Q~da~~k~rn---~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~el 267 (534)
-|+.+=...+..+..-+.++-+ +++--|+.|+.+--=.+..+|+.++.-+-=...--.-.+..-+.|+.+++.+-..
T Consensus 21 e~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ 100 (205)
T KOG1003|consen 21 DRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERA 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566666677777878888877 4555568888876656666777665443221122224566666777777776655
Q ss_pred HHhHHHHHHHHHHHHHHhhch
Q 009446 268 ESQGLELRQLVNEYEDKLKNL 288 (534)
Q Consensus 268 erE~~~lKe~V~e~E~klk~~ 288 (534)
++-++----.|.+++..++.+
T Consensus 101 eeraE~~Es~~~eLeEe~~~~ 121 (205)
T KOG1003|consen 101 EERAEAAESQSEELEEDLRIL 121 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 554444444455555555433
No 137
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=32.78 E-value=1.3e+03 Score=30.43 Aligned_cols=267 Identities=22% Similarity=0.281 Sum_probs=144.9
Q ss_pred HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh---
Q 009446 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE--- 289 (534)
Q Consensus 213 ~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e--- 289 (534)
..-.||++.+. |+-++.-.++...++|-.++.++..=-..+.---..++++.++..++.+.|..++..+-.+.
T Consensus 395 ~~qqqle~~~l----ele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~ 470 (1822)
T KOG4674|consen 395 KLQQQLESLKL----ELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQL 470 (1822)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666554 34555556666666666666655544333333344555555555555555555555554444
Q ss_pred -----------hhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccchhHHHHHhHhhhhhHHHHHH-
Q 009446 290 -----------SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTR- 357 (534)
Q Consensus 290 -----------~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~~ksI~eLak- 357 (534)
.+..-|.+|+.++..=-+.+..+..++.+.- . ...++|.+..+-.-|..+++|-+|.-
T Consensus 471 ~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~---------~-~~~es~S~~iIse~Lv~F~nI~eLqek 540 (1822)
T KOG4674|consen 471 NDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSD---------S-TENESDSEEIISERLVEFSNINELQEK 540 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc---------c-cccCccHHHHHHHHHHHhccHHHHHHH
Confidence 3333333333333322233333333322221 1 33677888888888999999988642
Q ss_pred --HHHHHhHHHHH---h------------hHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhh
Q 009446 358 --IVVEKTRDLVQ---K------------KSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAEN 420 (534)
Q Consensus 358 --eV~~Kv~~~~E---~------------k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~E~~qkrseLLQiAE~ 420 (534)
+....|+.+-+ . -+-.+..+...|..|.++..+.+..+.+-+++|.-.-
T Consensus 541 N~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~-------------- 606 (1822)
T KOG4674|consen 541 NVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYK-------------- 606 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 22222332222 2 2223446778999999999999999999999876631
Q ss_pred hhhhhcccchhhcccCCCCCCCCccccC-------CC------cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009446 421 GLREAGIDFKFSKLLSDGKVPVSDDKAN-------AM------ETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRA 487 (534)
Q Consensus 421 GLqevGfgF~~~~i~Gdg~~e~S~d~~~-------~~------s~eEdEV~SLAsalEniMK~sqlEI~eLrhsLEEsRs 487 (534)
.+-.=+.+. + .+..+++ ++ ...+.+.-+.-.-.-.+++.++-.|..|+-.+...|+
T Consensus 607 ---------e~l~~~e~~-~-~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~ 675 (1822)
T KOG4674|consen 607 ---------ELLAELEDS-H-QLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRS 675 (1822)
T ss_pred ---------Hhhhccccc-c-cCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001110 0 0000111 11 1223334444555566777777778888888888777
Q ss_pred hHHHHHHHHHHH-------HHHHHHHhhHhHHHHHHhh
Q 009446 488 ESSLLKEHLEAQ-------AKELSHRMKRIEELEEKER 518 (534)
Q Consensus 488 Es~~Lq~l~E~Q-------aKEIa~~~~~IkELEEREr 518 (534)
+...+.....-+ -+.|..+...+..|++|..
T Consensus 676 ~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~ 713 (1822)
T KOG4674|consen 676 QLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNK 713 (1822)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665544333 3445666777777776654
No 138
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=32.75 E-value=1.5e+02 Score=33.45 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HhhHhHHHHHHhhhhhccce
Q 009446 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH-----RMKRIEELEEKERIANESVS 525 (534)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~-----~~~~IkELEERErvanenVE 525 (534)
+-++++++|+|.=...-+..|.|||.|-+-||.-+ |+|-. ..+|+-++++|-+++.+-+|
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlel----kK~k~nyv~LQEry~~eiQqKnksvsqclE 450 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLEL----KKIKANYVHLQERYMTEIQQKNKSVSQCLE 450 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45689999999999999999999999999888644 44433 36788899999988887766
No 139
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.72 E-value=2.1e+02 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHH
Q 009446 264 VAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQ 298 (534)
Q Consensus 264 i~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dq 298 (534)
+..|+-++.+++-.+..+.+.++.+..+-.+|+++
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555554455555555553
No 140
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.51 E-value=1.4e+02 Score=29.30 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccce-EEEeecc
Q 009446 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVS-YMFNWQY 532 (534)
Q Consensus 465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEERErvanenVE-L~~~~~~ 532 (534)
+.-+|+++.+...|+..++..- -+..+++- .++|...+.+|+.++-+-+.+.+.|. =|+.+++
T Consensus 138 ~arl~~l~~~~~rl~~ll~ka~----~~~d~l~i-e~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l 201 (262)
T PF14257_consen 138 EARLKNLEAEEERLLELLEKAK----TVEDLLEI-ERELSRVRSEIEQLEGQLKYLDDRVDYSTITISL 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEE
Confidence 4455666666666666665332 22222222 24677777888888888888888898 6666654
No 141
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.17 E-value=3.7e+02 Score=27.39 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=23.4
Q ss_pred CchhHHHHhhhchhHHHHHHHhhhhh--hhhhhhHHHHHh
Q 009446 181 GLPAVVYGVIKRTNEIVEELVGQIDA--TAKSRNDVREQM 218 (534)
Q Consensus 181 Gl~avaygv~KR~neiveel~~Q~da--~~k~rn~aReqm 218 (534)
|..-.-+=||-|+--++.+++.-.+. +-+....++.+.
T Consensus 104 Gf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~ 143 (216)
T KOG1962|consen 104 GFVLFLSLVIRRLHTLLRELATLRANEKAMKENEALKKQL 143 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44444445789999999998877663 333333444443
No 142
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=32.11 E-value=3.2e+02 Score=31.58 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=63.5
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQ 308 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~ 308 (534)
=.+|++.|.+||-++..--+.+++.++.++..|..+.-+-.++.+.+.+--=|+++-+-.+.....|.+-+.-+.---+.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998887777777777766555555555566666666655554444444
Q ss_pred HHHHH
Q 009446 309 VDDII 313 (534)
Q Consensus 309 L~~vi 313 (534)
+.++=
T Consensus 161 ~q~~~ 165 (632)
T PF14817_consen 161 LQDIQ 165 (632)
T ss_pred HHHHH
Confidence 44443
No 143
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=32.01 E-value=2.8e+02 Score=25.75 Aligned_cols=96 Identities=20% Similarity=0.323 Sum_probs=54.4
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCC
Q 009446 97 KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRS 176 (534)
Q Consensus 97 ~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~S 176 (534)
++|.+|.-+--+-=.|-++|-.+......+.+. .+.+.-+..++.+...--.|- -..|| |.+-.+|..|
T Consensus 4 ~i~~~L~pi~ekLisIrR~L~~~~t~~k~~~~~-~~~~~el~~lq~qL~eIe~~R-----~~DGK---F~~~~~g~~~-- 72 (134)
T PF10303_consen 4 PISPELQPIYEKLISIRRSLLSLNTRSKFSDSS-EESSSELKPLQEQLKEIESMR-----DVDGK---FVSPDTGEVP-- 72 (134)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhccCCCccc-cccHHHHHHHHHHHHHHHHhc-----cCCCC---eeCCCCCCCC--
Confidence 455666655555556666776665553333111 233344455666554433333 12333 3332122222
Q ss_pred ccccCchhHHHHhhhchhHHHHHHHhhhhh
Q 009446 177 QKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206 (534)
Q Consensus 177 qKYtGl~avaygv~KR~neiveel~~Q~da 206 (534)
-|-++++-|.+-+.+++++++..+-++
T Consensus 73 ---~~gQ~~l~~LLd~C~~li~dl~~~~~~ 99 (134)
T PF10303_consen 73 ---PGGQAVLNGLLDDCFDLIEDLLERKGE 99 (134)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345799999999999999999887764
No 144
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.88 E-value=2.5e+02 Score=23.67 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 261 DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 261 e~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
-+++.+++..+..++.+++.++.++.+++
T Consensus 39 r~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 39 RAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666777777777766664443
No 145
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.64 E-value=3.2e+02 Score=24.68 Aligned_cols=64 Identities=31% Similarity=0.400 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHhhHhHHHHHHhhhhhccce
Q 009446 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQA----KELSHRMKRIEELEEKERIANESVS 525 (534)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~Qa----KEIa~~~~~IkELEERErvanenVE 525 (534)
.++..-+..++.+|.+|+..++.++......+.--+.|- ++|.....+|++|...-.+|-.-+|
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777777777777766666666555553 5678889999999998888765544
No 146
>PRK00106 hypothetical protein; Provisional
Probab=31.01 E-value=2.9e+02 Score=31.27 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=33.0
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e 280 (534)
+.+.|..+..-.+.+.+|...++.-++.+..++..+...+.++...+..++.
T Consensus 99 L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~ 150 (535)
T PRK00106 99 LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEK 150 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655555666777777777777777766666666665555554443
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.96 E-value=5.7e+02 Score=28.99 Aligned_cols=83 Identities=7% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhh----HHHHHHHH
Q 009446 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNY----VSKIHDQV 309 (534)
Q Consensus 234 a~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~----v~~ihd~L 309 (534)
+-+.+.|.....+..++.+|+-..+.-++..--+|+-+-.+..++..+...++..++-++.|.+.... +.++.+++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46778888888888888887766666666656667777777777777777777777777777764433 33444444
Q ss_pred HHHHHhh
Q 009446 310 DDIIKIV 316 (534)
Q Consensus 310 ~~vi~~v 316 (534)
...+...
T Consensus 427 ~~~~~s~ 433 (493)
T KOG0804|consen 427 KEALGSK 433 (493)
T ss_pred HHHHHHH
Confidence 4444333
No 148
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=30.01 E-value=4.7e+02 Score=26.57 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=52.8
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHH
Q 009446 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKI 305 (534)
Q Consensus 231 qLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~i 305 (534)
.|++.+++.+...+..---+|+...+.-+.+..-.++..+..-|++.+..+-.++.++..-.|-.++-+.-..+.
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKT 159 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 466777777766666666677777777777777668888888888877777777777776666666655555554
No 149
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.69 E-value=18 Score=40.76 Aligned_cols=51 Identities=29% Similarity=0.395 Sum_probs=0.0
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
+...|-+.+..||+|+-++....+++ ..++..+++++..|+.++.++-...
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~-------~~~~e~le~ei~~L~q~~~eL~~~A 290 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDL-------KIELEELEKEIDELRQENEELQAEA 290 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666555443333333 3333344444445555555544333
No 150
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=29.68 E-value=8.4e+02 Score=27.55 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=25.9
Q ss_pred HhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 009446 50 ENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE 87 (534)
Q Consensus 50 e~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ 87 (534)
+..+.+++..=.++...-+++-++.++...+|+.+-..
T Consensus 216 q~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~k 253 (489)
T PF05262_consen 216 QEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQK 253 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44556666666667777777777888888888776443
No 151
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.68 E-value=1.6e+02 Score=32.97 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q 009446 467 IVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (534)
Q Consensus 467 iMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEER 516 (534)
-+...|....+|+..|+..|.|...|.........+|.++...|+.|+.+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999988888888888888888888888876
No 152
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=29.64 E-value=4.3e+02 Score=28.30 Aligned_cols=83 Identities=24% Similarity=0.350 Sum_probs=62.9
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH-------HHHHhhchhhhchhHHHHhhh
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE-------YEDKLKNLESHRPLLVDQLNY 301 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e-------~E~klk~~e~~r~lL~dql~~ 301 (534)
+.-|+--+-..|+-+..|+-..|.+.+.++.....+.+++.-.-.=+.+|.. ++..|-.+.+.+-+|--||.-
T Consensus 160 ~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 160 FNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777778889999999999999999999999999999854444555544 455555556788888888887
Q ss_pred HHHHHHHHHH
Q 009446 302 VSKIHDQVDD 311 (534)
Q Consensus 302 v~~ihd~L~~ 311 (534)
+++--+.-..
T Consensus 240 A~~K~~~kek 249 (305)
T PF14915_consen 240 AHNKADNKEK 249 (305)
T ss_pred HHHHHHHHHH
Confidence 7765554443
No 153
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=29.31 E-value=95 Score=35.83 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=43.3
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ 276 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe 276 (534)
|++|+-++++...|+..+-++++.|.++++..+..|+.|..|+..++-
T Consensus 26 v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 26 VPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 789999999999999999999999999999999999999887666554
No 154
>PRK04325 hypothetical protein; Provisional
Probab=29.08 E-value=2.4e+02 Score=23.81 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=17.5
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 009446 244 AKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (534)
Q Consensus 244 a~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e 280 (534)
|----.++.|.+-++.-...|..+.+.+..|.+++.+
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445444555555555555544444444444
No 155
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.05 E-value=4.6e+02 Score=26.47 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHHHhHHHHHHHHHHHHHHhhchhhhch------------hHHHHhhhHHHHHHHHHHHHHhhcCCCc
Q 009446 266 EIESQGLELRQLVNEYEDKLKNLESHRP------------LLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (534)
Q Consensus 266 elerE~~~lKe~V~e~E~klk~~e~~r~------------lL~dql~~v~~ihd~L~~vi~~vd~~k~ 321 (534)
+++.+...|++-|..+...|+|+.+-+. .--+..+-.++++....+|++.+..+-.
T Consensus 120 emQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~p 187 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLP 187 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4445777888888888888888873221 2234556677888888888888876643
No 156
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.99 E-value=2.8e+02 Score=25.65 Aligned_cols=74 Identities=24% Similarity=0.349 Sum_probs=33.1
Q ss_pred HHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHHHHHhhhhc
Q 009446 45 AREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124 (534)
Q Consensus 45 ~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~k~~~~~~~~~~ 124 (534)
.|.+++.|.++++..+.=|-.-....=--++++..+||+ |+ -.+..|-.+-..+++-..+++.+++++.+..+
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~-L~------~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQ-LR------NALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777643332222222222235555555555 22 23344555666777777788888888777644
Q ss_pred C
Q 009446 125 G 125 (534)
Q Consensus 125 ~ 125 (534)
.
T Consensus 76 ~ 76 (107)
T PF09304_consen 76 D 76 (107)
T ss_dssp H
T ss_pred H
Confidence 3
No 157
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.89 E-value=2.6e+02 Score=33.76 Aligned_cols=118 Identities=18% Similarity=0.197 Sum_probs=73.9
Q ss_pred HHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 009446 199 ELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (534)
Q Consensus 199 el~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V 278 (534)
.|.+++--...---.+++|-|---++.-+|++.|+.-.++||.|+..-.+..-.| -.++..|+..+|++...|+...
T Consensus 488 ~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl---~eer~qklk~le~q~s~lkk~l 564 (913)
T KOG0244|consen 488 PLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKL---GEERVQKLKSLETQISLLKKKL 564 (913)
T ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHh---hhHHHHHHHHHHHHHHHHHHhh
Confidence 3444433322233467888888889999999999999999999999888733233 4566788888888877777666
Q ss_pred HHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCC
Q 009446 279 NEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDG 319 (534)
Q Consensus 279 ~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~ 319 (534)
..--.-++....-......-..+++-++..=..++.....+
T Consensus 565 ~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d 605 (913)
T KOG0244|consen 565 SSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKED 605 (913)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55333332211222223334455556666655555555444
No 158
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.12 E-value=2e+02 Score=28.24 Aligned_cols=45 Identities=33% Similarity=0.359 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 009446 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRM 507 (534)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~ 507 (534)
|=-.-++.++++|.+|++-+++++-|--.|+.+---|.+.|.++.
T Consensus 9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e 53 (194)
T PF15619_consen 9 ARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYE 53 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456799999999999999999999999999999999987764
No 159
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.91 E-value=56 Score=27.36 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHhhchhhhchhHHH
Q 009446 269 SQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (534)
Q Consensus 269 rE~~~lKe~V~e~E~klk~~e~~r~lL~d 297 (534)
.||+.||++|.+|+.+...|+..+.+|-.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999988888888877766643
No 160
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.88 E-value=5.6e+02 Score=24.37 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=49.8
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHh
Q 009446 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKI 315 (534)
Q Consensus 238 ~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~ 315 (534)
+.+.+-++=--.|++|++.+-.-+.....+..++++.|.-|..+..++..+-..+.-|---+..+++=++.|..-++.
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444556777877777777777777777777777777777777655555555555566666655555544433
No 161
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=26.71 E-value=1.3e+02 Score=26.63 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009446 467 IVKASQLEIVELRHSVEELRAESSLLKEHLE 497 (534)
Q Consensus 467 iMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E 497 (534)
.++.++.+|.+|+..+.+++.|.+-|++.++
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999998764
No 162
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=26.59 E-value=7.4e+02 Score=25.70 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHh
Q 009446 27 FSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVN 106 (534)
Q Consensus 27 ~~~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~ 106 (534)
..+.+++.++.+|++=+..|..-+..+-+.-...+=...|.-.. ++ . -+.+=++ -|+.-+++.+.|.+-.
T Consensus 188 ~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~--~~-~-----~e~lf~~--eL~k~~~~~~~l~~~~ 257 (337)
T cd09234 188 AIEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTT--GG-D-----MEDLFKE--ELKKHDQLVNLIEQNL 257 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhc--ch-h-----HHHHHHH--HHHHhhhHHHHHHHHH
Confidence 45889999999999999998887766633222211111111000 00 0 0111111 2333555556665555
Q ss_pred hhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhh---hhcccCCCCCCCCCCCCCCccccCch
Q 009446 107 IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEK---ISGKVSNFKNFSAGGLPRSQKYTGLP 183 (534)
Q Consensus 107 ~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ek---is~k~s~~k~f~~~~lP~SqKYtGl~ 183 (534)
..-+.+-++|.++-..=-+.|...+. ...+-+..-+.|..+..+ |.+++.--..| |++|.
T Consensus 258 ~~Q~~ll~~i~~an~~f~~~r~~~~~-------~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~F----------Y~dL~ 320 (337)
T cd09234 258 AAQENILKALTEANAKYAPVRKALSE-------TKQKRESTISSLIASYEAYEDLLKKSQKGIDF----------YKKLE 320 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHH
Confidence 55555555554433221000111111 223333334444444433 33333333344 88999
Q ss_pred hHHHHhhhchhHHHH
Q 009446 184 AVVYGVIKRTNEIVE 198 (534)
Q Consensus 184 avaygv~KR~neive 198 (534)
.++-+|.+++.+.|.
T Consensus 321 ~~v~~~~~~~~~f~~ 335 (337)
T cd09234 321 GNVSKLLQRIKSVCK 335 (337)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888777664
No 163
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.58 E-value=3e+02 Score=22.62 Aligned_cols=47 Identities=11% Similarity=0.232 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Q 009446 469 KASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (534)
Q Consensus 469 K~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEE 515 (534)
...+.++......++...-....|....+.+.++|..+..+|+++++
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888899999999999999988875
No 164
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.27 E-value=3.4e+02 Score=28.37 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Q 009446 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (534)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEE 515 (534)
+..-.++.|.+|..|.-.+++.-+...-++.-...=-.+|.++...|++|++
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666665555666666666666654
No 165
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.20 E-value=6.9e+02 Score=25.32 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=45.8
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHH
Q 009446 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIES-------QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDD 311 (534)
Q Consensus 239 lr~eva~k~s~~e~l~k~~~eke~ki~eler-------E~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~ 311 (534)
++.++-+-...+++-++.+.+-...+..|.. ++-...+-+..+|.-++.+++.|.-..+.+.-++-.+..|.+
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455667777777776666665544 333445567888999998887777666666444443333333
Q ss_pred HHH
Q 009446 312 IIK 314 (534)
Q Consensus 312 vi~ 314 (534)
-|+
T Consensus 96 ~in 98 (230)
T PF10146_consen 96 EIN 98 (230)
T ss_pred HHH
Confidence 333
No 166
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.93 E-value=2.7e+02 Score=25.79 Aligned_cols=61 Identities=33% Similarity=0.461 Sum_probs=29.0
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHH--HHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKV--AEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki--~elerE~~~lKe~V~e~E~klk~~e 289 (534)
+..|.+.|..|++++..-...+-.|+..+..-.... .++...+..|++.|..++.+|..|.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444444444443333222 3334455555555555555554444
No 167
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.53 E-value=2.4e+02 Score=30.39 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=35.6
Q ss_pred hhhHHHHHhhhhcceeee-eehhhHHHhhhchHHHhhhhhhHHHHHHHHHH--hHH-HHHHHHHhHHHHHHHHHHHHHHh
Q 009446 210 SRNDVREQMEQRNFEIAI-EVSELEATISGLREEVAKKSSFIENLEKSLIE--KDE-KVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 210 ~rn~aReqmeqrny~iAI-EVSqLEa~is~lr~eva~k~s~~e~l~k~~~e--ke~-ki~elerE~~~lKe~V~e~E~kl 285 (534)
..+..++.+..||+..-| +|.+|......+..++..--+..-.++|.+.. +.+ ...++-.++..+++.+..++.++
T Consensus 10 n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 10 NPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred CHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888764211 12222222222222222222222223333322 111 23344445666666666666666
Q ss_pred hchhh
Q 009446 286 KNLES 290 (534)
Q Consensus 286 k~~e~ 290 (534)
+.+++
T Consensus 90 ~~~~~ 94 (425)
T PRK05431 90 DELEA 94 (425)
T ss_pred HHHHH
Confidence 55553
No 168
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.46 E-value=1.9e+02 Score=24.64 Aligned_cols=55 Identities=20% Similarity=0.468 Sum_probs=41.8
Q ss_pred eeehhhHHHhhhchHHHhhhhhhHHH---HHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446 227 IEVSELEATISGLREEVAKKSSFIEN---LEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 227 IEVSqLEa~is~lr~eva~k~s~~e~---l~k~~~eke~ki~elerE~~~lKe~V~e~ 281 (534)
++.-.++.+++.||--+.+=-+.+.+ +.+++.+.+.+|..++..+...++.+..|
T Consensus 21 ~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 21 LSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888777666666 78888888888887777776666666655
No 169
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.41 E-value=1.3e+02 Score=26.29 Aligned_cols=53 Identities=13% Similarity=0.357 Sum_probs=34.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhchhhhchhH--HHHhhhHHHHH---HHHHHHHHhh
Q 009446 264 VAEIESQGLELRQLVNEYEDKLKNLESHRPLL--VDQLNYVSKIH---DQVDDIIKIV 316 (534)
Q Consensus 264 i~elerE~~~lKe~V~e~E~klk~~e~~r~lL--~dql~~v~~ih---d~L~~vi~~v 316 (534)
|.-+..|..--|+++.++.++++.|+.+..-+ .+.+..|++++ +.|..+++..
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44455666777788888888888888555444 23556666655 5666666655
No 170
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.19 E-value=4.6e+02 Score=22.79 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHHHH
Q 009446 43 RQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE 118 (534)
Q Consensus 43 r~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~k~~~~ 118 (534)
.............++.++.++..|..+.=.+|..+-+..+...+.+.+.-..-.+|..+|..+...+..+..++..
T Consensus 31 ~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 31 KQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 171
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.91 E-value=5.3e+02 Score=26.49 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchH---------HHhhhhhhHHHH
Q 009446 183 PAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLRE---------EVAKKSSFIENL 253 (534)
Q Consensus 183 ~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~---------eva~k~s~~e~l 253 (534)
|..|.-+....=+-++..+.++ ..+.+.+++.-++++==+.--++.+.|..+...|. ....-...+..|
T Consensus 142 P~~A~~ian~l~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L 219 (362)
T TIGR01010 142 AEEAQKINQRLLKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTL 219 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHhhchhhh
Q 009446 254 EKSLIEKDEKVAEIES-------QGLELRQLVNEYEDKLKNLESH 291 (534)
Q Consensus 254 ~k~~~eke~ki~eler-------E~~~lKe~V~e~E~klk~~e~~ 291 (534)
+..+.+.+.+++++.. .|-.++.++..++..+.....+
T Consensus 220 ~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~ 264 (362)
T TIGR01010 220 EGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQ 264 (362)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHH
No 172
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.73 E-value=2.8e+02 Score=22.87 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=15.6
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446 244 AKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 244 a~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~ 281 (534)
|----.++.|..-+..-...|..+++.+..|.+++.++
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444455554444444444444443
No 173
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.70 E-value=1.7e+02 Score=25.12 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCccc
Q 009446 275 RQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQET 336 (534)
Q Consensus 275 Ke~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~et 336 (534)
......|..++..+..+..-|-.++.-+....+.|..+-+..++...- ..+..++|+|...
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l-~~~g~~~~~~~~i 65 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELL-VPLGAGLFVKAEV 65 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEE-EecCCceEEEEEE
Confidence 334444555555556666666677777777777777765544433321 2234455555544
No 174
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.66 E-value=6e+02 Score=23.96 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCC
Q 009446 269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDG 319 (534)
Q Consensus 269 rE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~ 319 (534)
.+-...++.|+.|+..|+.+......|.+...-+...+..+...+..+..-
T Consensus 24 ~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~ 74 (236)
T PF09325_consen 24 EWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS 74 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344588999999999999998888888887777777777777777666533
No 175
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.23 E-value=6.6e+02 Score=24.30 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=26.8
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhc
Q 009446 97 KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISG 160 (534)
Q Consensus 97 ~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~ 160 (534)
.|..+...+++....+.++-.++... .+..+....++.....=...-+++|+|
T Consensus 93 ~L~~~~~~L~~~e~~l~~~~~~l~~~-----------~~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 93 QLDRRLEQLEKREEELEKKEEELEQR-----------KEELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555555555444443222 223444556666555555556666665
No 176
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.01 E-value=1e+03 Score=26.39 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=49.1
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH------hhchhhhchhHHHHhhhHHHHHHHHH
Q 009446 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDK------LKNLESHRPLLVDQLNYVSKIHDQVD 310 (534)
Q Consensus 237 s~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~k------lk~~e~~r~lL~dql~~v~~ihd~L~ 310 (534)
..++.+++.--..|..+.+.+.+...+..+++++...++..+.+++.- -.+|+.. .+.|....+|.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e----~~~L~n~e~i~~~~~ 232 (563)
T TIGR00634 157 NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAE----QQRLSNLEKLRELSQ 232 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHH----HHHHhCHHHHHHHHH
Confidence 346777777777777777777777777776777777777766665321 1111222 234556667777777
Q ss_pred HHHHhhcCC
Q 009446 311 DIIKIVDDG 319 (534)
Q Consensus 311 ~vi~~vd~~ 319 (534)
.++..++++
T Consensus 233 ~~~~~L~~~ 241 (563)
T TIGR00634 233 NALAALRGD 241 (563)
T ss_pred HHHHHHhCC
Confidence 777777543
No 177
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=23.86 E-value=2e+02 Score=29.22 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHHHHHh-hhhcCCccchhhhhhhhh
Q 009446 60 FNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVT-KARDGSRSQLDEVTKAKD 138 (534)
Q Consensus 60 f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~k~~~~~~-~~~~~~~~~~~~~~~~~~ 138 (534)
+.-+|+-|+|-||||++ .-..|-+=|..+-+-|||+..|+.... ..---...+.++...
T Consensus 17 LE~~k~~A~EElRk~ee-----------------qi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~~~~~~~~--- 76 (214)
T PF07795_consen 17 LEATKMEANEELRKREE-----------------QIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQQSDEQQQ--- 76 (214)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccccC---
Q ss_pred hhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhch
Q 009446 139 GLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRT 193 (534)
Q Consensus 139 ~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~ 193 (534)
-.+.|.++.+.=.|..+ -+.--++|.+|.+.+-|.-++-.|..+|.+=+.+|.
T Consensus 77 -~~~s~~~~~s~ssS~~~-~s~~Ss~~~~~~~~~~~~~~~~~~~~~v~~la~~K~ 129 (214)
T PF07795_consen 77 -PNSSLTSSNSHSSSPVE-ESISSSPFSNFNPLPQQQQQQVDPADAVLELAKGKP 129 (214)
T ss_pred -ccccccCCCCcCCCCCC-CCccCCcccccCccccccccccChHHHHHHHHhCCC
No 178
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.77 E-value=3e+02 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=13.8
Q ss_pred hhHHHHHHHhhhhhhhhhhhHHHHH
Q 009446 193 TNEIVEELVGQIDATAKSRNDVREQ 217 (534)
Q Consensus 193 ~neiveel~~Q~da~~k~rn~aReq 217 (534)
+.+-+..|=+|+......-++++.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566666666655555555444
No 179
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.73 E-value=3.2e+02 Score=23.81 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=12.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 263 KVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 263 ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
+|..++..|..|-+.|..+|...+.||
T Consensus 67 ~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 67 QIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 180
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=23.65 E-value=3.9e+02 Score=28.82 Aligned_cols=104 Identities=17% Similarity=0.307 Sum_probs=61.8
Q ss_pred hhhhhhhhHHHHHhhhhcc-eeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 009446 205 DATAKSRNDVREQMEQRNF-EIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYED 283 (534)
Q Consensus 205 da~~k~rn~aReqmeqrny-~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~ 283 (534)
.+--+.==++=+.+-||+| +||=+.+.|+|.+-++|-= ..+++.+-.-.+ |.++-++-. +|++.+..|
T Consensus 52 qaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G----~~LVekM~~YAS--DQEVLdMh~---FlreAL~rL-- 120 (324)
T PF12126_consen 52 QAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTG----GALVEKMKLYAS--DQEVLDMHG---FLREALERL-- 120 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH----HHHHHHHHHhcc--hHHHHHHHH---HHHHHHHHh--
Confidence 3333333355667789999 4899999999999777642 234444422222 444554444 555555443
Q ss_pred HhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCc
Q 009446 284 KLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (534)
Q Consensus 284 klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~ 321 (534)
+.-+-++.--.-...++.-.+-+|-+++-|+-.+..
T Consensus 121 --rqeePq~lqa~V~td~F~E~k~rLQ~L~scItq~td 156 (324)
T PF12126_consen 121 --RQEEPQNLQAAVRTDGFDEFKARLQDLVSCITQGTD 156 (324)
T ss_pred --hhhcCcccccceecccHHHHHHHHHHHHHHHhcCcc
Confidence 222333333333456777788889999999876643
No 181
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=23.53 E-value=5.9e+02 Score=23.49 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=30.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHH
Q 009446 22 SSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHE 69 (534)
Q Consensus 22 ~~~~~~~~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~e 69 (534)
||--.+=.+|=..+...++.=.+++..|+.-+.+.+....-.+.=|.+
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ 92 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQL 92 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666677777777777777777777777665555444433
No 182
>PRK00295 hypothetical protein; Provisional
Probab=23.49 E-value=4e+02 Score=22.13 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=18.2
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446 244 AKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 244 a~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~ 281 (534)
|----.++.|.+-++.-...|..+.+.+..|.+++...
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444455555555555555555544444444443
No 183
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=23.19 E-value=1.2e+03 Score=26.95 Aligned_cols=240 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHH---------
Q 009446 195 EIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVA--------- 265 (534)
Q Consensus 195 eiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~--------- 265 (534)
+.+..|=..+|..+--=..-+....||+- +|-..+..|++|--.-.+.+..|++++++-...+.
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~-------qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa 76 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQ-------QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPA 76 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccc
Q ss_pred -------HHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccch
Q 009446 266 -------EIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDM 338 (534)
Q Consensus 266 -------elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD~ 338 (534)
.+..++..|+..++.+.+++...-..+--|..-...--.==..|..-+++......+...|.+.+-+++.|
T Consensus 77 ~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t-- 154 (617)
T PF15070_consen 77 GPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKAT-- 154 (617)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH--
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHh
Q 009446 339 EENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVA 418 (534)
Q Consensus 339 Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~E~~qkrseLLQiA 418 (534)
+.+.|..+. .-+..+.+|.+....|+.+|-++.+=|.+...-+..
T Consensus 155 ----------------~SRAlsQN~-----eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~ke-------------- 199 (617)
T PF15070_consen 155 ----------------ASRALSQNR-----ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKE-------------- 199 (617)
T ss_pred ----------------HHHHHHhHH-----HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH--------------
Q ss_pred hhhhhhhcccchhhcccCCCCCCCCccccCCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 009446 419 ENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEE-------------- 484 (534)
Q Consensus 419 E~GLqevGfgF~~~~i~Gdg~~e~S~d~~~~~s~eEdEV~SLAsalEniMK~sqlEI~eLrhsLEE-------------- 484 (534)
|..-+|+ +-.--+.+...|+.--.|++.|++.-+.
T Consensus 200 ------------L~~kl~~-------------------l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~ 248 (617)
T PF15070_consen 200 ------------LQKKLGE-------------------LQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQ 248 (617)
T ss_pred ------------HHHHHHH-------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhH
Q 009446 485 LRAESSLLKEHLEAQAKELSHRMKR 509 (534)
Q Consensus 485 sRsEs~~Lq~l~E~QaKEIa~~~~~ 509 (534)
+.++.+-|+.-+--|++-+....++
T Consensus 249 l~~e~e~L~~q~l~Qtql~d~lq~e 273 (617)
T PF15070_consen 249 LASEKEELHKQLLQQTQLMDRLQHE 273 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 184
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.17 E-value=5.7e+02 Score=29.96 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=26.0
Q ss_pred HhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhccee
Q 009446 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEI 225 (534)
Q Consensus 188 gv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~i 225 (534)
.||.|+.++..+.=.+++.....=++-|.++++..-++
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~ 534 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHL 534 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889988887776677666666666666666654443
No 185
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=23.09 E-value=8.3e+02 Score=25.06 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 009446 27 FSVERFREVLAELNRERQAREAAENSA 53 (534)
Q Consensus 27 ~~~~~~~~l~ael~~er~~r~aae~s~ 53 (534)
..+..++.++.+|+.-++.|..-+..+
T Consensus 190 ~~v~~Lr~~l~~l~~lk~eR~~~~~~l 216 (342)
T cd08915 190 EVVSSLRPLLNEVSELEKERERFISEL 216 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999888888776655
No 186
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.04 E-value=2.7e+02 Score=24.29 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=7.5
Q ss_pred HhhhHHHHHHHHHHHHHh
Q 009446 298 QLNYVSKIHDQVDDIIKI 315 (534)
Q Consensus 298 ql~~v~~ihd~L~~vi~~ 315 (534)
++..+..+-..|......
T Consensus 74 ~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 187
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.01 E-value=5e+02 Score=23.98 Aligned_cols=14 Identities=21% Similarity=0.691 Sum_probs=6.7
Q ss_pred HHHHhHhhhhhHHH
Q 009446 341 NIRASLAGMESIYQ 354 (534)
Q Consensus 341 ~lK~sl~~~ksI~e 354 (534)
.|+.=+..++.+|.
T Consensus 100 EL~~Dv~DlK~myr 113 (120)
T PF12325_consen 100 ELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555444
No 188
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.66 E-value=91 Score=25.08 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhchhhhchhHHHH
Q 009446 273 ELRQLVNEYEDKLKNLESHRPLLVDQ 298 (534)
Q Consensus 273 ~lKe~V~e~E~klk~~e~~r~lL~dq 298 (534)
.+-++|+.++..+..|+.+|..|++|
T Consensus 16 ~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777777888888876
No 189
>PRK01156 chromosome segregation protein; Provisional
Probab=22.64 E-value=1.2e+03 Score=26.89 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=5.1
Q ss_pred hhhhhHHhhh
Q 009446 137 KDGLRSEIEN 146 (534)
Q Consensus 137 ~~~l~~ei~~ 146 (534)
.+.|.++|+.
T Consensus 425 i~~l~~~i~~ 434 (895)
T PRK01156 425 VSSLNQRIRA 434 (895)
T ss_pred HHHHHHHHHH
Confidence 4445555553
No 190
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.47 E-value=4e+02 Score=22.40 Aligned_cols=47 Identities=26% Similarity=0.116 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 009446 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRM 507 (534)
Q Consensus 461 AsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~ 507 (534)
.++-+..+|.++.|-.-.-++|.....++..|+.-.+.-.|++.+..
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566788888888888889999999999999998888888866554
No 191
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.36 E-value=3.8e+02 Score=28.14 Aligned_cols=131 Identities=26% Similarity=0.348 Sum_probs=82.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHH---HHHHHHhhhhcCCccchhhhhhhhhhhhHHhh
Q 009446 69 ESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVV---KQLDEVTKARDGSRSQLDEVTKAKDGLRSEIE 145 (534)
Q Consensus 69 ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~---k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~ 145 (534)
+.=..+.+|+-.-++-..+|++.++.++.+-.+++.++..-..+. .+|++..+.+.|--+.| .+-.+.|--..+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L---~~r~~ELe~~~E 208 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL---KKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH---HHHHHHhccccc
Confidence 344456788888899999999999999999999998876555544 35666666655422221 122345666667
Q ss_pred hhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHh
Q 009446 146 NSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQM 218 (534)
Q Consensus 146 ~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqm 218 (534)
-.-|.+++-..|=+.-.+ |--+-+ |-|- |.- -.--|+.+|+|---+++||.+|-+-+
T Consensus 209 l~e~~~i~dl~~et~~l~------p~die~-~~~~------~~~---~e~e~~i~lg~~~iaapsREdave~l 265 (290)
T COG4026 209 LPEEELISDLVKETLNLA------PKDIEG-QGYI------YAE---DEKEVEILLGTVYIAAPSREDAVEEL 265 (290)
T ss_pred chHHHHHHHHHHHHhccC------chhccc-eeee------ecc---cccccceeeeeeeeecCchHHHHHHH
Confidence 778888888877332222 211111 1111 111 12235677888888999999987655
No 192
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.31 E-value=1.3e+03 Score=27.18 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=45.9
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHH------HHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHH
Q 009446 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVA------EIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIH 306 (534)
Q Consensus 233 Ea~is~lr~eva~k~s~~e~l~k~~~eke~ki~------elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ih 306 (534)
|+++..||-||+.-+-+.+.. ++++|. ++=+|-+.|++++++++....++..-=..+-+.++-+++.|
T Consensus 7 eq~ve~lr~eierLT~el~q~------t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~h 80 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQT------TEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQH 80 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777766655554433 122222 23347778999999999999666644455667788888888
Q ss_pred HHH
Q 009446 307 DQV 309 (534)
Q Consensus 307 d~L 309 (534)
...
T Consensus 81 kk~ 83 (772)
T KOG0999|consen 81 KKV 83 (772)
T ss_pred HHh
Confidence 643
No 193
>PRK00736 hypothetical protein; Provisional
Probab=22.19 E-value=3.8e+02 Score=22.28 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 009446 249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (534)
Q Consensus 249 ~~e~l~k~~~eke~ki~elerE~~~lKe~V~e 280 (534)
.++.|.+-++.-...|..|.+.+..|.+++.+
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 194
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.90 E-value=9.8e+02 Score=25.48 Aligned_cols=131 Identities=20% Similarity=0.245 Sum_probs=88.9
Q ss_pred cccCCCCCCCCCC--CCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhh
Q 009446 160 GKVSNFKNFSAGG--LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237 (534)
Q Consensus 160 ~k~s~~k~f~~~~--lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is 237 (534)
....+..|+|++. -|.+-+|..-...---....|++.+..--+.+..+..=|.....-+.|=--.+ -.|-.++=.
T Consensus 171 ~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl---~~Q~~~vn~ 247 (384)
T PF03148_consen 171 TQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDL---RAQADAVNA 247 (384)
T ss_pred HHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4566788998766 57776666222233446778888888888888888777766544333211111 123333444
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh------hhch
Q 009446 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE------SHRP 293 (534)
Q Consensus 238 ~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e------~~r~ 293 (534)
.|+.-++.--..-..|+-.+..-...|+++++++..|+.-+..-++-++=+. .+||
T Consensus 248 al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP 309 (384)
T PF03148_consen 248 ALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRP 309 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCC
Confidence 4555555555666678888888899999999999999999998888876554 6777
No 195
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.85 E-value=3e+02 Score=26.01 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=13.0
Q ss_pred eehhhHHHhhhchHHHh
Q 009446 228 EVSELEATISGLREEVA 244 (534)
Q Consensus 228 EVSqLEa~is~lr~eva 244 (534)
...++.+.++.||-|+.
T Consensus 52 ~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45577888888888876
No 196
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.67 E-value=1.1e+03 Score=26.18 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=48.8
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh----hhchhHHHHhhh
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLNY 301 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e----~~r~lL~dql~~ 301 (534)
|..+++..|-..+++.++=-+.+-++++.+..-+..+.++..+...+++.|..+++.+.-++ .+|.+|..+|..
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A 123 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAA 123 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677766666666666666666666666677777777777777777777777776666 444555554443
No 197
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.62 E-value=4.8e+02 Score=27.19 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=12.2
Q ss_pred chhhhchhHHHHhhhHHHHHHHHHHHHHhhcCC
Q 009446 287 NLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDG 319 (534)
Q Consensus 287 ~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~ 319 (534)
.++.+-....+++..++++ +.+-+.+.+=.++
T Consensus 117 sl~~q~~~~~~~L~~L~kt-Nv~n~~F~I~hdG 148 (314)
T PF04111_consen 117 SLKNQYEYASNQLDRLRKT-NVYNDTFHIWHDG 148 (314)
T ss_dssp HHHHHHHHHHHHHHCHHT---TTTTT--EEEET
T ss_pred HHHHHHHHHHHHHHHHHhc-CchhceeeEeecC
Confidence 3334444444444444443 2333344444444
No 198
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.56 E-value=4e+02 Score=24.12 Aligned_cols=48 Identities=29% Similarity=0.455 Sum_probs=37.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHH
Q 009446 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEEL-------RAESSLLKEHLEAQA 500 (534)
Q Consensus 453 eEdEV~SLAsalEniMK~sqlEI~eLrhsLEEs-------RsEs~~Lq~l~E~Qa 500 (534)
.+.++|..-..++.-+..+..+|.+|+..+.++ |.|-.+|+.++..-.
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788889999999999999999999888765 666677776665443
No 199
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=21.10 E-value=8.3e+02 Score=24.31 Aligned_cols=128 Identities=19% Similarity=0.334 Sum_probs=82.1
Q ss_pred HHHHhhhchhHHHHHHHhhhhh-------hhhhhhHHHHHhhhhcce----eeee---ehh--------hHHHhhhchHH
Q 009446 185 VVYGVIKRTNEIVEELVGQIDA-------TAKSRNDVREQMEQRNFE----IAIE---VSE--------LEATISGLREE 242 (534)
Q Consensus 185 vaygv~KR~neiveel~~Q~da-------~~k~rn~aReqmeqrny~----iAIE---VSq--------LEa~is~lr~e 242 (534)
+|--.+.-++.+|++++..+.. -....+....||+++=|. +.+- .++ +|+.+.-+=.+
T Consensus 68 ~a~d~l~la~~ald~V~~~~~g~~~~~~~l~~l~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~e~e~~~e~lv~~ 147 (229)
T PF11101_consen 68 LASDGLELARDALDEVATSLLGDSNARDRLKQLMDQLKQQVDRRFYQRGDGFVLHAQAFSQLDEFFDQEFEQAIEQLVQE 147 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHheeCCCcEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777766 223334445555555553 2222 233 44444221111
Q ss_pred HhhhhhhHHHHHHHH--HHhHHHHHHHHHhHHHHHHHHH-HHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHH
Q 009446 243 VAKKSSFIENLEKSL--IEKDEKVAEIESQGLELRQLVN-EYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIK 314 (534)
Q Consensus 243 va~k~s~~e~l~k~~--~eke~ki~elerE~~~lKe~V~-e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~ 314 (534)
.-.+.+-++...+ ++=+.++.+++.-|..|++.|+ +++...+.|+.+-.-|-+.+..+...+..|...|-
T Consensus 148 --s~g~i~~~l~~~m~~~~G~~~l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~lC~~l~~L~~~E~~L~~~IP 220 (229)
T PF11101_consen 148 --SMGSILQALGNEMGSSEGDQNLQAFEQRMEGLQQQIEQEMEAQAQELEQKAQALCDSLQQLDQQEQQLQQRIP 220 (229)
T ss_pred --HHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1234455554444 2225679999999999999994 68888888899999999999999999999877663
No 200
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.08 E-value=7.6e+02 Score=23.87 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=33.1
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhc
Q 009446 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (534)
Q Consensus 241 ~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (534)
.|+..+-..+..+++.+..++..+. +....|.++-..++.+-+.+..+...|-+.-.-+..++.....-+..+.
T Consensus 71 ~E~~~~~~el~~~E~rl~~rE~~L~---~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iA 144 (201)
T PF12072_consen 71 RELKERRKELQRLEKRLQQREEQLD---RRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555666666665554443 2222333333333333333344444444444444444444444444443
No 201
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.01 E-value=4.8e+02 Score=30.91 Aligned_cols=107 Identities=27% Similarity=0.328 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhhhhhhhH----HHHHhhhhcceeeeeeh--------hhHHHhhhchHHHhhhhhhHHHHHHHHHHhH
Q 009446 194 NEIVEELVGQIDATAKSRND----VREQMEQRNFEIAIEVS--------ELEATISGLREEVAKKSSFIENLEKSLIEKD 261 (534)
Q Consensus 194 neiveel~~Q~da~~k~rn~----aReqmeqrny~iAIEVS--------qLEa~is~lr~eva~k~s~~e~l~k~~~eke 261 (534)
|-..++=|.+.|.|-|.==+ |||-=|||=.+.....| +||+-|..+...++.-.++.-.|.++|.+|+
T Consensus 40 ~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~ 119 (769)
T PF05911_consen 40 KLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKE 119 (769)
T ss_pred hHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HHHHHHHH-------hHHHHHHHHHHHHHHhhchhhhchhHHHHhh
Q 009446 262 EKVAEIES-------QGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (534)
Q Consensus 262 ~ki~eler-------E~~~lKe~V~e~E~klk~~e~~r~lL~dql~ 300 (534)
.-|.+|.+ ++..|..+++.+|-....|+-.=.+|.+.|.
T Consensus 120 ~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 120 KLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 202
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=20.35 E-value=3.9e+02 Score=25.74 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=38.4
Q ss_pred cccCCCCchh--hhHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhh
Q 009446 17 IDVQTSSDED--FSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRD 75 (534)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrd 75 (534)
+..-.|+.+- .-+.+++.+--++..-..+=.||+++++.++..++|.++-+--|.-+|-
T Consensus 62 ~~a~~P~~~~~~~wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rk 122 (136)
T PF11570_consen 62 FFANNPPHEYGRGWQLKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRK 122 (136)
T ss_dssp CCTT-TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5666677665 3357777777778887888899999999999999999987766665553
No 203
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.30 E-value=8.4e+02 Score=26.96 Aligned_cols=118 Identities=23% Similarity=0.290 Sum_probs=75.4
Q ss_pred CchhHHHHhhhchhH----------HHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhH
Q 009446 181 GLPAVVYGVIKRTNE----------IVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFI 250 (534)
Q Consensus 181 Gl~avaygv~KR~ne----------iveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~ 250 (534)
||.-|+-.|=+|-.| ++.+|..-.++-.|..++ .-+||..|..+++|-..----.
T Consensus 86 glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~---------------~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 86 GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGD---------------IQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcch---------------HHHHHHHHHHHHHHHHHHHHhH
Confidence 555566666555443 344444444444444332 3579999999999988888888
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh-chhhhchhHHH---Hhhh-HHHHHHHHHHHH
Q 009446 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK-NLESHRPLLVD---QLNY-VSKIHDQVDDII 313 (534)
Q Consensus 251 e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk-~~e~~r~lL~d---ql~~-v~~ihd~L~~vi 313 (534)
+++....-||+.+-..|.||+.+..-....|-++-. .+-.|+.+|-. +++- =++|.|-.++|-
T Consensus 151 ~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 151 DALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIR 218 (401)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987777666555533321 22356655554 2333 456777544443
No 204
>PRK04406 hypothetical protein; Provisional
Probab=20.24 E-value=4.1e+02 Score=22.61 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=7.7
Q ss_pred hHHHHhhhHHHHHHHHHHHHH
Q 009446 294 LLVDQLNYVSKIHDQVDDIIK 314 (534)
Q Consensus 294 lL~dql~~v~~ihd~L~~vi~ 314 (534)
.+..|=.-+..+...|..+.+
T Consensus 33 ~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 33 ALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 205
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=20.19 E-value=3.3e+02 Score=29.26 Aligned_cols=136 Identities=26% Similarity=0.250 Sum_probs=80.5
Q ss_pred CCCCCCCccccCch-----------hHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHH-hh
Q 009446 170 AGGLPRSQKYTGLP-----------AVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEAT-IS 237 (534)
Q Consensus 170 ~~~lP~SqKYtGl~-----------avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~-is 237 (534)
+-++|++.+|.-++ ....+-|.++-+.|..+=.+-++..|...-+++ +-.++|+--+||+-++-. +-
T Consensus 140 ~~~~~~~~~~~k~~~~~~~~~~~~~~~v~~~~~~~~~l~~a~~s~~~~~~k~~~~~~~-~i~~~~~e~~e~~~~~k~~~~ 218 (325)
T KOG2669|consen 140 AKKLPRGSKQIKLDEKGSKPGLSSLGEVHEKIDSSVELVRALQSLENAASKLDAVLEE-RIARLPQEVEEVSSLEKITLN 218 (325)
T ss_pred hhccccchHhhhhhhhccCCCCCCccccchhHHhHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHhhhH
Confidence 45566666655333 344566778889999988888998888887765 556888888999988864 66
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----hHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHH
Q 009446 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIES----QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (534)
Q Consensus 238 ~lr~eva~k~s~~e~l~k~~~eke~ki~eler----E~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L 309 (534)
-+.+++++...+.+.+ +.+-..+++...- =+..+++...+-.+.+.+.+.+-+...+++.-+..+.+.+
T Consensus 219 ~~~e~~~k~lee~~~l---L~e~~~~L~s~~~~~~~~~~~l~d~l~~q~~~l~~~~~~~~~~k~~l~~~~n~~~~~ 291 (325)
T KOG2669|consen 219 SLIESLAKHLEEEEML---LREVNPRLAAEEESRRQLVSMLRDALREQKEELNDEEPQLEEYKEKLDKAQNVQKEL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcccchhhhhhHHHHHHHHhhhhccccccccCchhhhhhHHHHhhhhhhh
Confidence 6667777776666666 5444444443322 1122333322222233333344455555555333333333
No 206
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.00 E-value=8.9e+02 Score=27.12 Aligned_cols=132 Identities=19% Similarity=0.290 Sum_probs=76.6
Q ss_pred HHHHHHhHHHHHHHHHHHHH-Hhhchh----hhchhHHH--HhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCccc
Q 009446 264 VAEIESQGLELRQLVNEYED-KLKNLE----SHRPLLVD--QLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQET 336 (534)
Q Consensus 264 i~elerE~~~lKe~V~e~E~-klk~~e----~~r~lL~d--ql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~et 336 (534)
+-||+- ||++|+.++.. ....+- ...|-.+- ....+..+-..+..++..+.+... ..|-...-+|+..
T Consensus 360 L~EL~a---FL~qRl~El~~~~~~~l~~~~~~~ap~~lq~~t~~~i~~ml~~V~~ii~~Lt~~~~--~~L~~Ik~SprYv 434 (507)
T PF05600_consen 360 LLELEA---FLKQRLYELSNEESSSLSFSQFQNAPSILQQQTAESIEEMLSAVEEIISQLTNPRT--QHLFMIKSSPRYV 434 (507)
T ss_pred HHHHHH---HHHHHHHHhcccccchHHHHHhhhccHHHHhcCHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHhcCHHHH
Confidence 345554 99999999862 221111 22333222 334455566666777777776665 3333434445444
Q ss_pred c-hhHHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcc
Q 009446 337 D-MEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404 (534)
Q Consensus 337 D-~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea 404 (534)
| +-..|+-.+..+.-.......+..|.... ..+..+++..+..|.+.-+..-.++-..|++|-.
T Consensus 435 drl~~~L~qk~~~~~k~~~~~~~l~~kr~e~----~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y~ 499 (507)
T PF05600_consen 435 DRLVESLQQKLKQEEKLRRKREDLEEKRQEA----QEEQQELEPKLDALVERTRELQKQIEADISKRYK 499 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4 33444444444444444444444443333 3445688899999999999999999999998743
Done!