Query 009446
Match_columns 534
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 05:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 95.0 0.06 2E-06 60.9 9.3 33 31-63 858-890 (1184)
2 1i84_S Smooth muscle myosin he 94.7 0.03 1E-06 63.3 6.1 36 29-64 863-898 (1184)
3 1c1g_A Tropomyosin; contractIl 89.3 10 0.00034 32.8 26.7 6 56-61 39-44 (284)
4 3na7_A HP0958; flagellar bioge 86.7 6.7 0.00023 37.2 11.7 55 227-288 32-86 (256)
5 3oja_B Anopheles plasmodium-re 84.4 9.3 0.00032 38.8 12.2 116 203-321 471-586 (597)
6 3na7_A HP0958; flagellar bioge 76.9 51 0.0017 31.1 16.2 60 230-289 14-73 (256)
7 3vkg_A Dynein heavy chain, cyt 75.8 1.4E+02 0.0049 38.4 20.6 27 230-256 2038-2064(3245)
8 2xdj_A Uncharacterized protein 69.6 23 0.00077 29.5 8.3 51 462-512 9-59 (83)
9 3mq7_A Bone marrow stromal ant 68.9 48 0.0017 29.8 10.7 54 452-505 50-110 (121)
10 3nmd_A CGMP dependent protein 67.7 7.4 0.00025 32.2 4.9 41 229-269 21-61 (72)
11 2b5u_A Colicin E3; high resolu 61.4 16 0.00056 39.4 7.3 101 95-216 323-423 (551)
12 2v71_A Nuclear distribution pr 60.7 62 0.0021 30.7 10.4 123 253-391 47-173 (189)
13 3trt_A Vimentin; cytoskeleton, 60.5 20 0.00068 28.2 6.0 39 455-493 38-76 (77)
14 3hnw_A Uncharacterized protein 60.5 17 0.00058 32.5 6.3 63 227-289 68-130 (138)
15 2b9c_A Striated-muscle alpha t 58.9 32 0.0011 31.0 7.9 105 191-302 13-120 (147)
16 3mq9_A Bone marrow stromal ant 58.4 40 0.0014 33.5 9.2 102 181-286 360-467 (471)
17 3hnw_A Uncharacterized protein 58.0 46 0.0016 29.7 8.6 54 461-514 77-130 (138)
18 1lwu_C Fibrinogen gamma chain; 57.3 23 0.0008 35.7 7.3 53 464-516 3-55 (323)
19 2fxo_A Myosin heavy chain, car 57.0 83 0.0028 27.2 9.9 93 202-298 27-119 (129)
20 3a7p_A Autophagy protein 16; c 52.5 53 0.0018 30.4 8.2 65 233-297 67-131 (152)
21 3oja_B Anopheles plasmodium-re 51.4 1.1E+02 0.0039 30.9 11.3 14 265-278 519-532 (597)
22 3oja_A Leucine-rich immune mol 50.4 1.2E+02 0.0042 30.2 11.3 102 198-299 374-486 (487)
23 3tnu_B Keratin, type II cytosk 44.7 38 0.0013 29.3 5.8 40 456-495 19-58 (129)
24 3he5_A Synzip1; heterodimeric 42.2 47 0.0016 25.3 5.1 41 240-280 9-49 (49)
25 2dfs_A Myosin-5A; myosin-V, in 40.0 4.4E+02 0.015 30.2 14.9 39 366-404 971-1009(1080)
26 3nmd_A CGMP dependent protein 39.8 67 0.0023 26.5 6.1 41 475-515 21-61 (72)
27 3oja_A Leucine-rich immune mol 39.5 3E+02 0.01 27.4 16.5 106 371-516 366-471 (487)
28 3u1c_A Tropomyosin alpha-1 cha 39.0 1.2E+02 0.004 25.6 7.7 48 468-515 11-58 (101)
29 3tnu_B Keratin, type II cytosk 37.1 2E+02 0.0069 24.7 9.9 58 229-289 38-95 (129)
30 2v66_B Nuclear distribution pr 36.4 2.2E+02 0.0075 25.0 10.7 80 234-313 3-90 (111)
31 3tnu_A Keratin, type I cytoske 35.0 2.2E+02 0.0075 24.6 10.3 59 228-289 39-97 (131)
32 3vkg_A Dynein heavy chain, cyt 34.0 4.1E+02 0.014 34.5 14.4 23 407-429 2121-2143(3245)
33 3a6m_A Protein GRPE, HSP-70 co 32.6 52 0.0018 30.4 5.0 58 218-280 1-58 (177)
34 1dip_A Delta-sleep-inducing pe 30.1 24 0.00082 29.6 2.0 29 269-297 15-43 (78)
35 2dfs_A Myosin-5A; myosin-V, in 29.9 3.1E+02 0.01 31.6 11.5 13 376-388 1020-1032(1080)
36 3tnu_A Keratin, type I cytoske 29.9 2.7E+02 0.0092 24.0 11.0 83 31-151 46-128 (131)
37 1fxk_C Protein (prefoldin); ar 29.6 1.4E+02 0.0047 25.3 6.8 64 272-337 4-67 (133)
38 1ci6_A Transcription factor AT 29.2 1.3E+02 0.0046 23.3 6.1 37 461-497 25-61 (63)
39 1deq_A Fibrinogen (alpha chain 28.1 5.5E+02 0.019 27.0 12.3 48 463-510 110-157 (390)
40 1vcs_A Vesicle transport throu 28.1 2E+02 0.0068 24.1 7.4 77 233-311 11-88 (102)
41 1gk4_A Vimentin; intermediate 28.0 2.4E+02 0.0082 22.8 9.3 78 37-152 1-78 (84)
42 1zxa_A CGMP-dependent protein 27.8 77 0.0026 25.8 4.6 39 247-285 10-48 (67)
43 1ci6_A Transcription factor AT 26.7 1.6E+02 0.0056 22.8 6.2 17 261-277 43-59 (63)
44 1ic2_A Tropomyosin alpha chain 26.4 2.2E+02 0.0075 22.8 7.1 50 236-285 8-57 (81)
45 3mq9_A Bone marrow stromal ant 26.4 89 0.0031 31.0 5.8 42 452-493 422-470 (471)
46 3mtu_A Tropomyosin alpha-1 cha 26.3 1.8E+02 0.0061 23.5 6.5 49 261-310 8-65 (75)
47 2qyw_A Vesicle transport throu 26.3 2.4E+02 0.008 23.7 7.5 72 232-304 20-92 (102)
48 3ni0_A Bone marrow stromal ant 26.0 2.9E+02 0.0098 24.1 8.0 35 452-486 43-87 (99)
49 1fzc_C Fibrin; blood coagulati 25.8 50 0.0017 33.3 3.8 44 228-285 5-48 (319)
50 1wj5_A Hypothetical protein (r 25.5 63 0.0022 29.0 4.0 19 412-430 77-95 (120)
51 4etp_A Kinesin-like protein KA 25.3 1.1E+02 0.0036 31.3 6.2 7 328-334 113-119 (403)
52 2oqq_A Transcription factor HY 24.7 1E+02 0.0036 23.3 4.4 30 267-296 8-37 (42)
53 3iv1_A Tumor susceptibility ge 24.5 2.9E+02 0.0099 23.0 7.5 63 209-282 11-73 (78)
54 3onj_A T-snare VTI1; helix, HA 24.4 3E+02 0.01 22.7 8.0 73 234-308 8-83 (97)
55 2w83_C C-JUN-amino-terminal ki 24.4 1.7E+02 0.0058 24.6 6.1 59 86-158 9-67 (77)
56 1gk4_A Vimentin; intermediate 24.3 1.3E+02 0.0046 24.3 5.5 34 229-265 35-71 (84)
57 3ghg_A Fibrinogen alpha chain; 23.7 3.3E+02 0.011 29.8 9.7 46 227-272 109-155 (562)
58 4emc_A Monopolin complex subun 23.6 1.9E+02 0.0065 27.7 7.1 50 204-257 1-50 (190)
59 1gd2_E Transcription factor PA 22.7 1.3E+02 0.0045 24.3 5.1 43 244-286 25-67 (70)
60 3o0z_A RHO-associated protein 22.6 4.8E+02 0.016 24.4 9.9 33 227-259 41-73 (168)
61 3u1c_A Tropomyosin alpha-1 cha 22.1 3.5E+02 0.012 22.6 8.3 54 462-515 40-100 (101)
62 2e7s_A RAB guanine nucleotide 22.0 82 0.0028 28.6 4.1 27 229-255 3-29 (135)
63 2yy0_A C-MYC-binding protein; 20.3 73 0.0025 24.4 3.0 29 247-275 18-46 (53)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.02 E-value=0.06 Score=60.95 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhh
Q 009446 31 RFREVLAELNRERQAREAAENSATELSEKFNRL 63 (534)
Q Consensus 31 ~~~~l~ael~~er~~r~aae~s~~e~~~~f~rl 63 (534)
.+.++-.+|..-+..-...+....+++.....|
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444433333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.74 E-value=0.03 Score=63.28 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhH
Q 009446 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLK 64 (534)
Q Consensus 29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlk 64 (534)
.+++.++-+.|.+....+..++.....++...+.++
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=89.28 E-value=10 Score=32.79 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.1
Q ss_pred HHHHHH
Q 009446 56 LSEKFN 61 (534)
Q Consensus 56 ~~~~f~ 61 (534)
+...+.
T Consensus 39 ~~~~~~ 44 (284)
T 1c1g_A 39 LEDELV 44 (284)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.67 E-value=6.7 Score=37.18 Aligned_cols=55 Identities=4% Similarity=0.092 Sum_probs=39.5
Q ss_pred eeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch
Q 009446 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (534)
Q Consensus 227 IEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~ 288 (534)
-||..|++.+.+++..+......++++.+.....+..|. .++.++..+..++.+.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~-------~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ-------DTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcc
Confidence 567788888888888887777777777666666555555 7777777777776443
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.41 E-value=9.3 Score=38.83 Aligned_cols=116 Identities=8% Similarity=0.015 Sum_probs=50.3
Q ss_pred hhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 009446 203 QIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (534)
Q Consensus 203 Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E 282 (534)
.++...+.-+..++.++.+--...+.+..+......+.+++.+-......+++........+.+...+...+++.+.+++
T Consensus 471 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 550 (597)
T 3oja_B 471 EQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE 550 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHH
Confidence 33334444444555555544444444433333333333333333223333333233333333333333334444444444
Q ss_pred HHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCc
Q 009446 283 DKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (534)
Q Consensus 283 ~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~ 321 (534)
..+ +.++..+.+.-.-...+...+....+.++++-.
T Consensus 551 ~~~---~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 551 KQL---DNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444 334444444445566667777788888877754
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.93 E-value=51 Score=31.15 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=24.6
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 230 SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
..+...|.+++.....--..+..|+..+..-...+..+..++..++..+..++..+..+.
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333444444444444444444444444444444444444443333
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.76 E-value=1.4e+02 Score=38.41 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=13.0
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHH
Q 009446 230 SELEATISGLREEVAKKSSFIENLEKS 256 (534)
Q Consensus 230 SqLEa~is~lr~eva~k~s~~e~l~k~ 256 (534)
.+||+.|..|+++.+...++.+.|+..
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444444333
No 8
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=69.63 E-value=23 Score=29.53 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHH
Q 009446 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEE 512 (534)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkE 512 (534)
..+|+++.+...-..+|+..++.++.|+..|+-.+|.+.-+|.....+-++
T Consensus 9 ~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 9 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356777777777889999999999999999999999999999887765554
No 9
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.89 E-value=48 Score=29.78 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=44.6
Q ss_pred chhHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 009446 452 TEEDEIYNLAGALENI-------VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH 505 (534)
Q Consensus 452 ~eEdEV~SLAsalEni-------MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~ 505 (534)
.|-.=|.+|--.|+.. |+.++-||..|.|.|.++-++.++|+...+.+.-.|+.
T Consensus 50 TCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 5777788888777763 88899999999999999999999999988877655543
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.65 E-value=7.4 Score=32.18 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=33.8
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~eler 269 (534)
|-+|+.++..-.+|+..|-..++.|++.+.+||..|.+|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888899999999988888885554
No 11
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=61.42 E-value=16 Score=39.40 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=56.1
Q ss_pred ccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 009446 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (534)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP 174 (534)
.++.-.||.+++|.-...+..++-+++. .+++++++..+-..|-..+- -+++|-+|...|+-
T Consensus 323 ~e~a~ael~~a~k~~a~~~er~~~t~~~--------------~~~~~~~~~~~n~~~~~~~~----~~~~f~~~n~~p~~ 384 (551)
T 2b5u_A 323 YERARAELNQANEDVARNQERQAKAVQV--------------YNSRKSELDAANKTLADAIA----EIKQFNRFAHDPMA 384 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHGGGTTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHhhhhHHHHHHH----hhhhhhhhccChhh
Confidence 3444455666666666666555555555 34444444333333332222 23566666555543
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHH
Q 009446 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVRE 216 (534)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aRe 216 (534)
-- .++.+.-.. -++|+++=|.-+=.+.|++++.-.+|.-
T Consensus 385 ~G--h~~w~~~~~-~~~~~~~dv~~~~a~~d~~~~~~s~~~~ 423 (551)
T 2b5u_A 385 GG--HRMWQMAGL-KAQRAQTDVNNKQAAFDAAAKEKSDADA 423 (551)
T ss_dssp TH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--chhhhhccc-hhhhhhhhhhhHHHHHHHHhhcccchhh
Confidence 33 222222111 6889999999999999998776655543
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.70 E-value=62 Score=30.68 Aligned_cols=123 Identities=21% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhh----chhHHHHhhhHHHHHHHHHHHHHhhcCCCcccccccc
Q 009446 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESH----RPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSE 328 (534)
Q Consensus 253 l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~----r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsE 328 (534)
|++.+..-+.+++.+...+..|+.-++.+-.|+...... -..|=+.+..+..+++.|-.=|.-+.-...
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND------- 119 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND------- 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q ss_pred ccCCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhH
Q 009446 329 SLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHI 391 (534)
Q Consensus 329 s~f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kEnedI 391 (534)
|++...|+..+-...+---=..+-.+ +.|+|..=.++-.|..++.+|..|-+|.
T Consensus 120 --------dlEr~~R~~~~SleD~e~kln~aiEr-~alLE~El~EKe~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 120 --------DLERAKRATIMSLEDFEQRLNQAIER-NAFLESELDEKESLLVSVQRLKDEARDL 173 (189)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC----------
T ss_pred --------HHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 13
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.52 E-value=20 Score=28.22 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009446 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLK 493 (534)
Q Consensus 455 dEV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq 493 (534)
+++-+.|+.=...++..+-||++|++.+.-+..|++.|+
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356677777778899999999999999999999988776
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.52 E-value=17 Score=32.48 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=46.9
Q ss_pred eeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 227 IEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
=|.-++...+..|+.++..+..++.+|-..+.....++.++.++...+++.+.+|+.++..|+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666667778888888888888888888888888888888888887777666
No 15
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=58.94 E-value=32 Score=31.02 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=67.0
Q ss_pred hchhHHHHHHHhhhhhhhhhh---hHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 009446 191 KRTNEIVEELVGQIDATAKSR---NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (534)
Q Consensus 191 KR~neiveel~~Q~da~~k~r---n~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~el 267 (534)
.|+.+-+.......+.+.|.- .++|-.+++|.+.-.=-+.+||..+ ..-....+.-.+...+-..|+.-+
T Consensus 13 er~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qL-------keak~~aeeadrKyeE~~RKl~~~ 85 (147)
T 2b9c_A 13 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL-------KEAKHIAEDADRKYEEVARKLVII 85 (147)
T ss_dssp GGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555555566666555554 4578888888875554555666665 333344455555556666667777
Q ss_pred HHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhH
Q 009446 268 ESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (534)
Q Consensus 268 erE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v 302 (534)
+.+.+-..+++...+.+++.|+..=..+-.+|.|+
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777888888777777776655666666654
No 16
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.39 E-value=40 Score=33.53 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=61.0
Q ss_pred CchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeee--ehhhHHHhhhchHHHhhh----hhhHHHHH
Q 009446 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIE--VSELEATISGLREEVAKK----SSFIENLE 254 (534)
Q Consensus 181 Gl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIE--VSqLEa~is~lr~eva~k----~s~~e~l~ 254 (534)
.+..+.+|-. =..+.++++..+++... ++.+.+++-+||.-.|. ++++++....+|-..+.- -+.-++|+
T Consensus 360 ~~~~vl~G~~-t~eeal~~~~~~i~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 360 AVINAASGRQ-TVDEALKDAQTRITAAR---DGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHSSS-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHH---HhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 3444555532 24556666666666554 33566666677754442 445555555444443321 13457888
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 009446 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286 (534)
Q Consensus 255 k~~~eke~ki~elerE~~~lKe~V~e~E~klk 286 (534)
|.++.-.++|.|+|-|+-.+...+...++.++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888788888888877777777777766663
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.04 E-value=46 Score=29.70 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 009446 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (534)
Q Consensus 461 AsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELE 514 (534)
...++.-++.+.-||.+|+|.|-..+...+-+..-.+.--+++..+..+|..||
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778888888888888888877777777777777777777777776
No 18
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=57.33 E-value=23 Score=35.69 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q 009446 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (534)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEER 516 (534)
+...+++++-+|.+|...|-..-+.+..|+..++.+..+|.++...|.+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889999999988888999999999999999999999999999865
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=57.00 E-value=83 Score=27.24 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=55.1
Q ss_pred hhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (534)
Q Consensus 202 ~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~ 281 (534)
..+....+.|.+. +..+-..--|...|-..+..-++-++.....++.|.++-.+-+.+|.+++..++...+.+..+
T Consensus 27 e~l~k~e~~r~el----e~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 27 EALEKSEARRKEL----EEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 444444445556666666666666677777777777777777788887777666666666666
Q ss_pred HHHhhchhhhchhHHHH
Q 009446 282 EDKLKNLESHRPLLVDQ 298 (534)
Q Consensus 282 E~klk~~e~~r~lL~dq 298 (534)
...-+.++..-.-|-++
T Consensus 103 ~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 103 TAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55554444443333333
No 20
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.46 E-value=53 Score=30.41 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=53.5
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHH
Q 009446 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (534)
Q Consensus 233 Ea~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~d 297 (534)
-.+|..|+.+++.....+.+|+..+.+|..-+..+.-|+..|+=....++++++.++.-+.-|++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777888888888888888888888888889999999999999999988876666655
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.36 E-value=1.1e+02 Score=30.92 Aligned_cols=14 Identities=14% Similarity=-0.183 Sum_probs=5.3
Q ss_pred HHHHHhHHHHHHHH
Q 009446 265 AEIESQGLELRQLV 278 (534)
Q Consensus 265 ~elerE~~~lKe~V 278 (534)
+.++++...+++.+
T Consensus 519 ~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 519 AFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhh
Confidence 33333333333333
No 22
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.37 E-value=1.2e+02 Score=30.18 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhhhcceeee-eehhhH---HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----
Q 009446 198 EELVGQIDATAKSRNDVREQMEQRNFEIAI-EVSELE---ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES---- 269 (534)
Q Consensus 198 eel~~Q~da~~k~rn~aReqmeqrny~iAI-EVSqLE---a~is~lr~eva~k~s~~e~l~k~~~eke~ki~eler---- 269 (534)
..+-.+..+-...+.+.++++.|..++.+- ++..++ ..+....+..++.-.+.+...+.....-.++..+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (487)
T 3oja_A 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENAR 453 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhh
Confidence 333444444555566666666666643333 233333 223223333333444444443333333333333333
Q ss_pred ---hHHHHHHHHHHHHHHhhchhhhchhHHHHh
Q 009446 270 ---QGLELRQLVNEYEDKLKNLESHRPLLVDQL 299 (534)
Q Consensus 270 ---E~~~lKe~V~e~E~klk~~e~~r~lL~dql 299 (534)
++.++...+.+-.++++++-.+...|..|+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 454 LKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 444444444444444444445555566555
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.73 E-value=38 Score=29.26 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=21.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009446 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEH 495 (534)
Q Consensus 456 EV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l 495 (534)
++-+.|+.-...+...+-||++|++.+..++++.+.|+..
T Consensus 19 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 19 ELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3555566666677888889999999999888888877654
No 24
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.16 E-value=47 Score=25.34 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=30.9
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 009446 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (534)
Q Consensus 240 r~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e 280 (534)
-.|||+--.+-|.|.|.---|..-|+-+++|+-+|+.+|++
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 34557777777778777777778889899988888888753
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.96 E-value=4.4e+02 Score=30.25 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=29.1
Q ss_pred HHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcc
Q 009446 366 LVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404 (534)
Q Consensus 366 ~~E~k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea 404 (534)
-++...+++..+++.|.+|.+|..+...-+..+..+++.
T Consensus 971 ~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~ 1009 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888888888887777777776666
No 26
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.81 E-value=67 Score=26.54 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Q 009446 475 IVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (534)
Q Consensus 475 I~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEE 515 (534)
|-+|+..|.....|.-....++....++|.++...|++|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999889999999999999999999999864
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.50 E-value=3e+02 Score=27.40 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=74.4
Q ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhcccchhhcccCCCCCCCCccccCCC
Q 009446 371 SREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAM 450 (534)
Q Consensus 371 ~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~E~~qkrseLLQiAE~GLqevGfgF~~~~i~Gdg~~e~S~d~~~~~ 450 (534)
..++++++..|...-++...+..-++.+...-+- |. ...-
T Consensus 366 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~----~~------------------------------------~~~~ 405 (487)
T 3oja_A 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL----QH------------------------------------ATEE 405 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC----CC------------------------------------CSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhh----cc------------------------------------cccc
Confidence 3445678888888888888777777766652111 00 0001
Q ss_pred cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q 009446 451 ETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (534)
Q Consensus 451 s~eEdEV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEER 516 (534)
...-..+.......+++.+.++.|+...++..+..+.+...|+.--+.+.|+|.++...|.+-..+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 112233667788889999999999999999999999988888888888888888887777654443
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.05 E-value=1.2e+02 Score=25.55 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Q 009446 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (534)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEE 515 (534)
|..++++.-...--.+.+....-.+......-..+|..+.++|+-||+
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555566666666666666554
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.13 E-value=2e+02 Score=24.70 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=32.7
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
+++|--+|.+|.-|+..=-+...+|+.++.+-+..-. .++..+...|..+|..|..+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555555544555555555555444332 256677777777777774443
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.41 E-value=2.2e+02 Score=24.97 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=52.2
Q ss_pred HHhhhchHHHhhhhhhHHHHHHH----HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHH----HhhhHHHH
Q 009446 234 ATISGLREEVAKKSSFIENLEKS----LIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD----QLNYVSKI 305 (534)
Q Consensus 234 a~is~lr~eva~k~s~~e~l~k~----~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~d----ql~~v~~i 305 (534)
..++.|+..++.=..++|.|-.. -++--..++.|++|+..|++....|-.+++.||..+.=|=. ...|+.-+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 34556666666666667666443 34445679999999999999999999999999955544432 23344444
Q ss_pred HHHHHHHH
Q 009446 306 HDQVDDII 313 (534)
Q Consensus 306 hd~L~~vi 313 (534)
...+-..|
T Consensus 83 E~k~n~ai 90 (111)
T 2v66_B 83 EQRLNQAI 90 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.05 E-value=2.2e+02 Score=24.56 Aligned_cols=59 Identities=29% Similarity=0.417 Sum_probs=36.1
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e 289 (534)
|+++|--+|.+|.-|+..--+...+|+.++.+-+..-. .++..++..|..+|..|..+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 56666667766666666555556666666655554332 356677777888877775444
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.01 E-value=4.1e+02 Score=34.50 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=13.0
Q ss_pred CCCchhhHHHHhhhhhhhhcccc
Q 009446 407 PSSKTNELFKVAENGLREAGIDF 429 (534)
Q Consensus 407 ~~qkrseLLQiAE~GLqevGfgF 429 (534)
+..-|..+++-=-.-|++.||.|
T Consensus 2121 ~~~~R~~l~~~W~~~l~~~~Ip~ 2143 (3245)
T 3vkg_A 2121 DQNFRTDLMRKWMIRLDSVGIKF 2143 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666665555566666643
No 33
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=32.63 E-value=52 Score=30.40 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=28.0
Q ss_pred hhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 009446 218 MEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (534)
Q Consensus 218 meqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e 280 (534)
|+.||-++. +++.+..+..+++.-...++.|++.+.+...++.-+.-|.+++|.+...
T Consensus 1 ~~~~~~~~~-----~~~~~~~~~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~r 58 (177)
T 3a6m_A 1 MEERNHENT-----LEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEE 58 (177)
T ss_dssp ---CTTTSS-----SGGGGTTTHHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHH
T ss_pred Ccccccccc-----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666543 3444445555554444444555555544444444444456666666544
No 34
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=30.14 E-value=24 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHhhchhhhchhHHH
Q 009446 269 SQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (534)
Q Consensus 269 rE~~~lKe~V~e~E~klk~~e~~r~lL~d 297 (534)
+||+.||++|.+|+.+...||..+.+|-.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999888877766643
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.90 E-value=3.1e+02 Score=31.56 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHhh
Q 009446 376 SLNEAVGQLVKEK 388 (534)
Q Consensus 376 ~Le~sV~~L~kEn 388 (534)
+|++.|..|.+||
T Consensus 1020 ~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 1020 ETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 36
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.87 E-value=2.7e+02 Score=24.00 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHH
Q 009446 31 RFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKD 110 (534)
Q Consensus 31 ~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~d 110 (534)
.+..|-+||+.-+..+.+.|.+.++.+.++..=-.=++..| +.==.++...|.
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i---------------------------~~lE~eL~~~r~ 98 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMI---------------------------GSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHH
Confidence 35566777777777777777777777766653222222222 111124556677
Q ss_pred HHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhh
Q 009446 111 EVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML 151 (534)
Q Consensus 111 e~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL 151 (534)
+++.|+.+.- +.--.+-+|-.||.|-.++|
T Consensus 99 em~~ql~EYq-----------~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 99 EMEQQNQEYK-----------ILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhH
Confidence 8888876621 12222556999999999887
No 37
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.59 E-value=1.4e+02 Score=25.30 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCcccc
Q 009446 272 LELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETD 337 (534)
Q Consensus 272 ~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~etD 337 (534)
..|......|...+.++..+..-|-..+.-+....+.|..+-. .++...--.|..++|+|...+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~ 67 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELK 67 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEEC
Confidence 3455555566666666666666666666666666666665443 223221134556666666553
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.23 E-value=1.3e+02 Score=23.32 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009446 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLE 497 (534)
Q Consensus 461 AsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E 497 (534)
...++.-++.+..+..+|+..+..++.|...|+.++.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777778888888888888888888888887764
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.09 E-value=5.5e+02 Score=26.97 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHh
Q 009446 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRI 510 (534)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~I 510 (534)
++-..+..|+..|+.|+.-|...=..+-.||..++.|-.+|..++.-|
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888888876788888888888888888888777
No 40
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.06 E-value=2e+02 Score=24.06 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=55.2
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhHHHHhhhHHHHHHHHHH
Q 009446 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQVDD 311 (534)
Q Consensus 233 Ea~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e-~~r~lL~dql~~v~~ihd~L~~ 311 (534)
|.-...+..++-.+.+-+-.+ +-.+|...|.++++.+.+..+.|...|.+++++- ..|+-+.-.+..+.+--+.|-.
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666655444 2367888999999999999999999999999987 5677776666666554444443
No 41
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=28.04 E-value=2.4e+02 Score=22.82 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHH
Q 009446 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQL 116 (534)
Q Consensus 37 ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~k~~ 116 (534)
||++.=+..+.+.|.+.++.+.++..=-.=++..| +.-=.++...|.+++.|+
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i---------------------------~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAVEAANYQDTI---------------------------GRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
Confidence 35666677777788888888777754222222222 111124555677777777
Q ss_pred HHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhh
Q 009446 117 DEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152 (534)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~ 152 (534)
.+-- +.--.+-+|-.||.|=.++|=
T Consensus 54 ~EYq-----------~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 54 REYQ-----------DLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----------HHHHHHHhhHHHHHHHHHHHc
Confidence 6521 122235568999999999885
No 42
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.80 E-value=77 Score=25.76 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 247 ~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
++.+|.+.+-+..|+.+|.+||.++.+-.+.|.+|...|
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888888776666666666655444
No 43
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.74 E-value=1.6e+02 Score=22.81 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=6.8
Q ss_pred HHHHHHHHHhHHHHHHH
Q 009446 261 DEKVAEIESQGLELRQL 277 (534)
Q Consensus 261 e~ki~elerE~~~lKe~ 277 (534)
..+|+.|+.|+..||+.
T Consensus 43 ~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 43 KERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.45 E-value=2.2e+02 Score=22.78 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=29.8
Q ss_pred hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 236 is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
+..|+.+.-.-..-++.++..+.+.+.+....+.|+..|+.++.-++..+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666666666666666666666666655
No 45
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.40 E-value=89 Score=31.03 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=30.5
Q ss_pred chhHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009446 452 TEEDEIYNLAGALENI-------VKASQLEIVELRHSVEELRAESSLLK 493 (534)
Q Consensus 452 ~eEdEV~SLAsalEni-------MK~sqlEI~eLrhsLEEsRsEs~~Lq 493 (534)
.|-.-|++|--.|+.- ++.+..||+.|.|.|+++|+++.+++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 422 TANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667788886666643 66777777778888888887777765
No 46
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=26.33 E-value=1.8e+02 Score=23.49 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=29.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-------Hhhchh--hhchhHHHHhhhHHHHHHHHH
Q 009446 261 DEKVAEIESQGLELRQLVNEYED-------KLKNLE--SHRPLLVDQLNYVSKIHDQVD 310 (534)
Q Consensus 261 e~ki~elerE~~~lKe~V~e~E~-------klk~~e--~~r~lL~dql~~v~~ihd~L~ 310 (534)
..|+..|..|..++.+.+..+|. ||+..+ -+.+- .+....+.+|.++||
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e-~e~~~l~~~I~~ILY 65 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE-GENDPVLQRIVDILY 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG-GGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHh
Confidence 34566677788888888888887 887777 11110 022344556666665
No 47
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=26.32 E-value=2.4e+02 Score=23.65 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=50.6
Q ss_pred hHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhHHHHhhhHHH
Q 009446 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSK 304 (534)
Q Consensus 232 LEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e-~~r~lL~dql~~v~~ 304 (534)
.|.-...+..++-.+.+-+-.+. +-.+|...|.++++.+++..+.|...|.+++++- ..|+-+.-.+..+.+
T Consensus 20 YE~df~~l~~~i~~kl~~i~~~~-~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~ 92 (102)
T 2qyw_A 20 LHEIFRGLLEDLQGVPERLLGTA-GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34445555566666666543321 1267888999999999999999999999999987 566666655555544
No 48
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.99 E-value=2.9e+02 Score=24.13 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=29.6
Q ss_pred chhHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHh
Q 009446 452 TEEDEIYNLAGALENI----------VKASQLEIVELRHSVEELR 486 (534)
Q Consensus 452 ~eEdEV~SLAsalEni----------MK~sqlEI~eLrhsLEEsR 486 (534)
.|-.-|.+|--.|++. ++.++-||..|.+.|.+++
T Consensus 43 TCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 43 SCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777799998888877 8888889999988888876
No 49
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.81 E-value=50 Score=33.27 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=24.8
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (534)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl 285 (534)
|+.+||++|..+ .+.+..|...+...+.+|. .|++.|..++.+.
T Consensus 5 ~~~~lE~~Il~~-------~~~i~~L~~~l~~~~~ki~-------~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 5 EIMKYEASILTH-------DSSIRYLQEIYNSNNQKIV-------NLKEKVAQLEAQC 48 (319)
T ss_dssp -----CTTTTTH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCh-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 788999999444 4555666555555566666 5666666666655
No 50
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=25.46 E-value=63 Score=29.01 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=15.3
Q ss_pred hhHHHHhhhhhhhhcccch
Q 009446 412 NELFKVAENGLREAGIDFK 430 (534)
Q Consensus 412 seLLQiAE~GLqevGfgF~ 430 (534)
..||+-|=.+|++-||-|.
T Consensus 77 ~sifKeAi~~Lqe~G~Vfq 95 (120)
T 1wj5_A 77 QRVFKNALQLLQEKGLVFQ 95 (120)
T ss_dssp HHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHHHCCEEEe
Confidence 4567677779999999996
No 51
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.32 E-value=1.1e+02 Score=31.28 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=3.2
Q ss_pred cccCCCc
Q 009446 328 ESLFLPQ 334 (534)
Q Consensus 328 Es~f~~~ 334 (534)
+.+|-|.
T Consensus 113 D~VF~~~ 119 (403)
T 4etp_A 113 DKIFDQQ 119 (403)
T ss_dssp SEEECTT
T ss_pred CEEECCC
Confidence 3455543
No 52
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.66 E-value=1e+02 Score=23.30 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=13.2
Q ss_pred HHHhHHHHHHHHHHHHHHhhchhhhchhHH
Q 009446 267 IESQGLELRQLVNEYEDKLKNLESHRPLLV 296 (534)
Q Consensus 267 lerE~~~lKe~V~e~E~klk~~e~~r~lL~ 296 (534)
||..+-+|..++.+||.++..|..-+.+|.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333444444444444444444444443
No 53
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.47 E-value=2.9e+02 Score=23.02 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=36.2
Q ss_pred hhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 009446 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (534)
Q Consensus 209 k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E 282 (534)
|=|.+.||.|.|-.-++ .|+-+-.+|+-+=.+-++.. +..-+..-+++++.++.|+++..+++
T Consensus 11 KLRrrl~E~~~q~qaEl--------~sLrrT~~EL~~G~~KL~~m---i~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAEL--------NALKRTEEDLKKGHQKLEEM---VTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH--------HHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887766544 35555556655555544444 44445555555555556666555554
No 54
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.42 E-value=3e+02 Score=22.74 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=51.2
Q ss_pred HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch--h-hhchhHHHHhhhHHHHHHH
Q 009446 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL--E-SHRPLLVDQLNYVSKIHDQ 308 (534)
Q Consensus 234 a~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~--e-~~r~lL~dql~~v~~ihd~ 308 (534)
.-...+..++-.+.+-+-++. -.+|...|.++++.+.+..+.|...|.+++|+ - ..|+-+.-.+..+.+--+.
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~--ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~ 83 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQP--LSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQS 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555554444332 34788899999999999999999999999999 5 5677777666666554444
No 55
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.39 E-value=1.7e+02 Score=24.58 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=44.0
Q ss_pred HHHHHHhhhccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhh
Q 009446 86 REKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKI 158 (534)
Q Consensus 86 r~ke~~~~~~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~eki 158 (534)
|+-|+.++.|..|-.-=.-+|..|++.-.++|+.+-. ++.|+.|+........-.-.||
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E--------------~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCE--------------KDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887777778999999999999998777 5668888876655544443333
No 56
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.32 E-value=1.3e+02 Score=24.32 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=23.3
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh---HHHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEKSLIEK---DEKVA 265 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~ek---e~ki~ 265 (534)
++.||+.+..+|.+.+.-..+...| +..| |.+|+
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~L---lnvK~~Ld~EIa 71 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDL---LNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHH
Confidence 4678888888888887777777777 4444 55554
No 57
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.66 E-value=3.3e+02 Score=29.82 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=37.9
Q ss_pred eeeh-hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHH
Q 009446 227 IEVS-ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL 272 (534)
Q Consensus 227 IEVS-qLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~ 272 (534)
-||| +||-.|..|+++|-..-+-+-.|+..|.+---+|..||-.+.
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677 999999999999999988888998888887777777777443
No 58
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.61 E-value=1.9e+02 Score=27.65 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=16.9
Q ss_pred hhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHH
Q 009446 204 IDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSL 257 (534)
Q Consensus 204 ~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~ 257 (534)
+|+-++-.+-|.+||++.. +.|+.|=.-+..|..++..|.++++.|.+.+
T Consensus 1 md~~~~YK~~~q~ql~~ad----~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql 50 (190)
T 4emc_A 1 MDPLTVYKNSVKQQIDSAD----LLVANLVNENFVLSEKLDTKATEIKQLQKQI 50 (190)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777888888765 3455665555556666655555555554433
No 59
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.73 E-value=1.3e+02 Score=24.29 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=29.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 009446 244 AKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286 (534)
Q Consensus 244 a~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk 286 (534)
..|...+..|+..+.+-+.....+..|...|+..|..+..++.
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667666666666666677777788888877776663
No 60
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.57 E-value=4.8e+02 Score=24.39 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=20.8
Q ss_pred eeehhhHHHhhhchHHHhhhhhhHHHHHHHHHH
Q 009446 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIE 259 (534)
Q Consensus 227 IEVSqLEa~is~lr~eva~k~s~~e~l~k~~~e 259 (534)
--++++|+.+..|++-++.=-..-..|++.+..
T Consensus 41 k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~ 73 (168)
T 3o0z_A 41 KSISQLESLNRELQERNRILENSKSQTDKDYYQ 73 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777776666666666666666543
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.08 E-value=3.5e+02 Score=22.61 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHH----HHHHHhhHhHHHHH
Q 009446 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLE---AQAK----ELSHRMKRIEELEE 515 (534)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E---~QaK----EIa~~~~~IkELEE 515 (534)
.-.|.-+..++..|..|..-|+..-......+.-++ ..+. +++.+.++|+-||+
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334555555566666666655554443333332222 2223 78888899998885
No 62
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.03 E-value=82 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHH
Q 009446 229 VSELEATISGLREEVAKKSSFIENLEK 255 (534)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k 255 (534)
||+||-+++.+|..++....-+..+++
T Consensus 3 ~s~LEd~L~~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 3 LGSLEEQLNKSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp ---CCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999888877777765
No 63
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.34 E-value=73 Score=24.43 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 009446 247 SSFIENLEKSLIEKDEKVAEIESQGLELR 275 (534)
Q Consensus 247 ~s~~e~l~k~~~eke~ki~elerE~~~lK 275 (534)
.+.+|.|-....+-..|+.+|..+..+++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665555555555554433333333
Done!