Query 009446
Match_columns 534
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 05:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009446.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009446hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 53.0 24 0.0017 27.4 7.7 76 212-289 12-91 (110)
2 d2efla1 a.238.1.4 (A:1-288) Fo 37.9 1E+02 0.0075 25.4 10.8 13 153-165 44-56 (288)
3 d1vcsa1 a.47.2.1 (A:8-96) Vesi 27.2 66 0.0048 24.7 6.2 64 239-304 10-74 (89)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.8 1.3E+02 0.0096 23.2 9.2 41 294-336 26-66 (133)
5 d2efka1 a.238.1.4 (A:10-288) C 24.2 1.8E+02 0.013 23.8 9.7 12 152-163 34-45 (279)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 14.3 2.4E+02 0.018 21.3 8.9 28 273-300 69-96 (107)
7 d1lvfa_ a.47.2.1 (A:) Syntaxin 12.6 2.6E+02 0.019 21.4 6.8 56 455-514 38-93 (106)
8 d1wa8b1 a.25.3.1 (B:602-695) E 12.5 1.6E+02 0.011 21.6 5.2 35 456-490 9-43 (94)
9 d1gqea_ e.38.1.1 (A:) Polypept 12.1 4.2E+02 0.03 24.4 9.3 84 229-312 8-110 (362)
10 d1x4ta1 a.2.15.1 (A:7-86) Pre- 12.1 1.5E+02 0.011 23.0 5.0 41 353-393 25-67 (80)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=53.03 E-value=24 Score=27.37 Aligned_cols=76 Identities=13% Similarity=0.252 Sum_probs=39.6
Q ss_pred hHHHHHhhhhcceeeeeehhhHH---HhhhchHHHhhhhhhHHHHHHHHHH-hHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 009446 212 NDVREQMEQRNFEIAIEVSELEA---TISGLREEVAKKSSFIENLEKSLIE-KDEKVAEIESQGLELRQLVNEYEDKLKN 287 (534)
Q Consensus 212 n~aReqmeqrny~iAIEVSqLEa---~is~lr~eva~k~s~~e~l~k~~~e-ke~ki~elerE~~~lKe~V~e~E~klk~ 287 (534)
+..++.+..|||.+.| .++-+ ....+.-++..--+.--.++|++.. +-....++-.++..+++.+..++.+++.
T Consensus 12 e~v~~~l~~R~~~~~l--d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~ 89 (110)
T d1seta1 12 EVFHRAIREKGVALDL--EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (110)
T ss_dssp HHHHHHHHHTTCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889998753 33322 2222222222222222233333321 2233455556777777777777777755
Q ss_pred hh
Q 009446 288 LE 289 (534)
Q Consensus 288 ~e 289 (534)
++
T Consensus 90 ~~ 91 (110)
T d1seta1 90 KE 91 (110)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.93 E-value=1e+02 Score=25.35 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=7.1
Q ss_pred hhhhhhhcccCCC
Q 009446 153 TGIEKISGKVSNF 165 (534)
Q Consensus 153 sg~ekis~k~s~~ 165 (534)
.++.|++.+..+.
T Consensus 44 k~L~kl~~~~~~~ 56 (288)
T d2efla1 44 KQLRNLSKKYQPK 56 (288)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhh
Confidence 3556666555443
No 3
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.24 E-value=66 Score=24.73 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=47.2
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhHHHHhhhHHH
Q 009446 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSK 304 (534)
Q Consensus 239 lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e-~~r~lL~dql~~v~~ 304 (534)
+-.++..|.+-+-++ +-.+|...|+++++.+++..+.|+..|.+++++- +.|.-+.-.+.++.+
T Consensus 10 l~a~i~~kl~~i~~~--~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 10 LTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQ 74 (89)
T ss_dssp HHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344445555444333 3467899999999999999999999999999998 666666666665543
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.82 E-value=1.3e+02 Score=23.21 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=17.9
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCccc
Q 009446 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQET 336 (534)
Q Consensus 294 lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~et 336 (534)
.|-..+.-+....+.|..+-.. +++..--.+..++|+|...
T Consensus 26 ~l~~~~~e~~~~~~~L~~l~~~--~~~e~lvplg~~~~v~~~i 66 (133)
T d1fxkc_ 26 AVRATISELEILEKTLSDIQGK--DGSETLVPVGAGSFIKAEL 66 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--TTCEEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhhcC--CCCeEEEEcCCceEEEEEe
Confidence 3333444444555555544322 2221112334667776653
No 5
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.24 E-value=1.8e+02 Score=23.76 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=5.8
Q ss_pred hhhhhhhhcccC
Q 009446 152 VTGIEKISGKVS 163 (534)
Q Consensus 152 ~sg~ekis~k~s 163 (534)
..++.|++.+..
T Consensus 34 ak~L~kL~~~~~ 45 (279)
T d2efka1 34 AKQLRSLVKKYL 45 (279)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 334455655443
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.30 E-value=2.4e+02 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhchhhhchhHHHHhh
Q 009446 273 ELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (534)
Q Consensus 273 ~lKe~V~e~E~klk~~e~~r~lL~dql~ 300 (534)
.|+.+++.++..++.++.+-.-|-+.+.
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444443
No 7
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.63 E-value=2.6e+02 Score=21.40 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 009446 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (534)
Q Consensus 455 dEV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELE 514 (534)
.|+..+..-|.+.++++.-.+.+|..++.-+-+..++++. -..+|..+...|....
T Consensus 38 ~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l----~~~ei~~Rr~fi~~~~ 93 (106)
T d1lvfa_ 38 EEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNL----DATELSIRKAFITSTR 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCC----CHHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999988777666642 1445666666555544
No 8
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.51 E-value=1.6e+02 Score=21.59 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 009446 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490 (534)
Q Consensus 456 EV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~ 490 (534)
.|-+.|+.|..+.+.++..+.+|+..+..+++-+.
T Consensus 9 ~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W~ 43 (94)
T d1wa8b1 9 GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWG 43 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47788999999999999999999999999987664
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=12.15 E-value=4.2e+02 Score=24.43 Aligned_cols=84 Identities=14% Similarity=0.297 Sum_probs=0.0
Q ss_pred ehhhHHHhhhchH--HHhhhhhhHHHHHHHHHHhH-----HHHHHHHHhHHHHHHHHHHHHHHhhchh------------
Q 009446 229 VSELEATISGLRE--EVAKKSSFIENLEKSLIEKD-----EKVAEIESQGLELRQLVNEYEDKLKNLE------------ 289 (534)
Q Consensus 229 VSqLEa~is~lr~--eva~k~s~~e~l~k~~~eke-----~ki~elerE~~~lKe~V~e~E~klk~~e------------ 289 (534)
+++|...+..||. ++..+...++.|++.++.-+ .+...+.+|...|+..|..|+.-...++
T Consensus 8 i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~ee 87 (362)
T d1gqea_ 8 IQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA 87 (362)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred hhchhHHHHhhhHHHHHHHHHHH
Q 009446 290 SHRPLLVDQLNYVSKIHDQVDDI 312 (534)
Q Consensus 290 ~~r~lL~dql~~v~~ihd~L~~v 312 (534)
.-..++-+....+..+...+..+
T Consensus 88 ~deel~~e~~~~l~~l~~~l~~l 110 (362)
T d1gqea_ 88 DDEETFNEAVAELDALEEKLAQL 110 (362)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHH
No 10
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.09 E-value=1.5e+02 Score=23.00 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHHHHh--hHHHHhhHHHHHHHHHHhhhhHHH
Q 009446 353 YQLTRIVVEKTRDLVQK--KSREVKSLNEAVGQLVKEKEHIVS 393 (534)
Q Consensus 353 ~eLakeV~~Kv~~~~E~--k~kE~k~Le~sV~~L~kEnedI~s 393 (534)
.++.+++..|+.....- ....+++||..+..|.+|+.+--.
T Consensus 25 ~~iikEI~~kvs~Iqn~~L~e~~IRdLNDeINkL~reK~~WE~ 67 (80)
T d1x4ta1 25 RQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEV 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888776653 578899999999999999987543
Done!