BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009447
         (534 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5FYL0|GPDA_ACICJ Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acidiphilium
           cryptum (strain JF-5) GN=gpsA PE=3 SV=1
          Length = 321

 Score = 34.3 bits (77), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 237 CTRGVSTDDGSIEPEITASCQKQVPCVKENSEISGHQVSVSPPPSSSSASSSGG 290
           C +GV  + G++ PEI A  + + PC         H++++  P ++  A +  G
Sbjct: 99  CAKGVERESGALGPEIAAEMEPRRPCAVLTGPNFAHEIAIGLPAAAVLAMTDDG 152


>sp|Q8CB14|LAS2_MOUSE Lung adenoma susceptibility protein 2 OS=Mus musculus GN=Las2 PE=2
           SV=1
          Length = 526

 Score = 33.9 bits (76), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 63/250 (25%)

Query: 309 FRILEEEEIRMPTNARLKATNMLMQLISCGSVSVKDHSFGVIPTYRPRFSHTKFPSPL-- 366
           +++L E+E R   + + +  N L+  I C                   F +T  PS L  
Sbjct: 280 YKLLNEDEYRPIHSYQTQRANQLLNKIDC-------------------FEYTFKPSNLTD 320

Query: 367 -FSTSIMFGD-LDCLSDNPRLMGLKLEDKEYFSGSLIETKILKEEGDEHNALKRSSSYNA 424
            FS     G+   C  DNP L G   + ++ F G  IE  ILK + +    LK+S     
Sbjct: 321 SFSEYEGLGNEFKCQCDNPLLPG---QSQKPFCGDKIELLILKAKKN----LKQS----- 368

Query: 425 DRISKQLDTVEDKEESNSGQSKCIPRAIKASLGKQGRSEAMRSPVP----DKPRNSS--- 477
              +K L    +K++     S C    ++A    +    A +SPVP    D P+ SS   
Sbjct: 369 ---AKDLPKPVEKDD-----SPCSLDKLEAERTWENVPVAFKSPVPVKADDSPQQSSRTQ 420

Query: 478 ----------DRVDSSQTVSGGTSNG---SSKRITESVSSKKPSKRLDSFREEEEKVIKI 524
                     +  + S T+SGG  +G   + K++  ++ + + S   +   E EE++ ++
Sbjct: 421 CVNAFLEDFLNGENQSSTLSGGKHHGPVEALKQMLFNLQTVQESFNKNKTTEPEEEIKQV 480

Query: 525 EESLLQELGL 534
            E  L +L +
Sbjct: 481 SEDDLAKLQM 490


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.126    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,067,511
Number of Sequences: 539616
Number of extensions: 8501483
Number of successful extensions: 30448
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 27461
Number of HSP's gapped (non-prelim): 1874
length of query: 534
length of database: 191,569,459
effective HSP length: 122
effective length of query: 412
effective length of database: 125,736,307
effective search space: 51803358484
effective search space used: 51803358484
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)