Query 009447
Match_columns 534
No_of_seqs 81 out of 83
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 05:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wsp_A Axin 1 protein; signali 97.7 0.00017 5.8E-09 60.9 8.6 75 32-118 4-81 (84)
2 3pz7_A Dixin; DIX domain, olig 97.4 0.0007 2.4E-08 58.0 8.7 76 31-116 7-83 (91)
3 3pz8_A Segment polarity protei 97.1 0.0011 3.7E-08 58.3 7.4 77 32-116 5-82 (106)
4 2h54_A Caspase-1; allosteric s 26.2 52 0.0018 30.3 3.8 62 31-97 108-176 (178)
5 1c1y_B Proto-onkogene serine/t 20.1 78 0.0027 26.4 3.3 28 49-76 2-37 (77)
6 1wxm_A A-RAF proto-oncogene se 19.8 1.8E+02 0.0062 24.7 5.5 52 59-116 26-78 (86)
7 1c76_A Staphylokinase, SAK; be 17.3 2.3E+02 0.0079 25.9 5.9 68 41-108 34-115 (136)
8 2kpo_A Rossmann 2X2 fold prote 14.9 15 0.00052 31.6 -2.2 33 1-49 74-107 (110)
9 2fp3_A Caspase NC; apoptosis, 14.7 64 0.0022 32.1 1.9 54 31-89 127-186 (316)
10 3rpf_C Molybdopterin convertin 14.0 1.5E+02 0.0052 22.8 3.5 14 59-72 19-32 (74)
No 1
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus} SCOP: d.15.1.8 PDB: 2d5g_A
Probab=97.65 E-value=0.00017 Score=60.94 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=60.3
Q ss_pred eeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeeeecc---ccCcceEeecCCCCccccC
Q 009447 32 KVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCKRS---YKNGFVWHDLCEDDLILPA 108 (534)
Q Consensus 32 kv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~KR~---YKngfvW~Dl~ddD~I~P~ 108 (534)
-.-|+|||+. -+.|.++-|| ...++|+|+|+-| .-++.|-+-||-- +-.|.||.+|+||+-++|.
T Consensus 4 ~T~V~Y~~~~---e~~Py~~~ip---~~~iTL~dFK~~l------~k~g~yrffFK~~~~d~~~~~V~eEI~dD~~~LP~ 71 (84)
T 1wsp_A 4 SIVVAYYFCG---EPIPYRTLVR---GRAVTLGQFKELL------TKKGSYRYYFKKVSDEFDCGVVFEEVREDEAILPV 71 (84)
T ss_dssp CEEEEEEETT---CSSCEEEEET---TSCCBHHHHHHHC------CSCSCEEEEEEEECTTSTTSEEEEEECCTTCBCCC
T ss_pred ceEEEEEeCC---CCcceEEecC---CCcccHHHHHHhc------CCCCceEEEEeecCccccCCceEEEEcCCCccccc
Confidence 3569999954 6799999876 2689999999998 3335777777765 3458999999999999999
Q ss_pred CCCeeEEecc
Q 009447 109 HGDEYVLKGS 118 (534)
Q Consensus 109 ~~~eYVLKgs 118 (534)
..|-.|.|-.
T Consensus 72 ~eGkIva~v~ 81 (84)
T 1wsp_A 72 FEEKIIGKVE 81 (84)
T ss_dssp BTTBEEEEEE
T ss_pred cCCEEEEEEE
Confidence 9999988753
No 2
>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A {Homo sapiens}
Probab=97.36 E-value=0.0007 Score=58.05 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=61.7
Q ss_pred ceeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeeeec-cccCcceEeecCCCCccccCC
Q 009447 31 RKVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCKR-SYKNGFVWHDLCEDDLILPAH 109 (534)
Q Consensus 31 rkv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~KR-~YKngfvW~Dl~ddD~I~P~~ 109 (534)
.-..|+|||.. -+.|.++.|+.+. +.++|+|+|+-|+ -++.|-+-||. ..-.|-||..|+||+-++|..
T Consensus 7 ~~TkV~Y~~d~---e~tPY~~~Ip~~~-~~iTL~dFK~~l~------r~g~yryfFK~~d~dfg~VkeEI~dD~~~LP~~ 76 (91)
T 3pz7_A 7 TCTKVLYFTDR---SLTPFMVNIPKRL-EEVTLKDFKAAID------REGNHRYHFKAMDPEFGTVKEEIFHDDDAIPGW 76 (91)
T ss_dssp CCEEEEEECTT---CSSCEEEEESSCS-TTCBHHHHHHHHC------CCSCEEEEEEEEETTTEEEEEEECCTTSBCCCB
T ss_pred ceeEEEEEcCC---CCCceEEECcCCc-ccccHHHHHHhhC------CCCCceEEEeeeCcccCccceEecCCCceeecc
Confidence 34568999864 4789999999874 7899999999994 13457777774 355699999999999999999
Q ss_pred CCeeEEe
Q 009447 110 GDEYVLK 116 (534)
Q Consensus 110 ~~eYVLK 116 (534)
.|-.|-|
T Consensus 77 eGkIva~ 83 (91)
T 3pz7_A 77 EGKIVAW 83 (91)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 9988866
No 3
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=97.12 E-value=0.0011 Score=58.34 Aligned_cols=77 Identities=21% Similarity=0.366 Sum_probs=59.6
Q ss_pred eeeEEEEEecCCcCCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCCccceeeeeecc-ccCcceEeecCCCCccccCCC
Q 009447 32 KVPVVYYICRNRQLEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGMASMYSWSCKRS-YKNGFVWHDLCEDDLILPAHG 110 (534)
Q Consensus 32 kv~VvYyL~r~g~leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM~~~ysWs~KR~-YKngfvW~Dl~ddD~I~P~~~ 110 (534)
-..|+|||+.. +.|.++.|+.+. +.++|+|+|+-|+ .||+| .|-+-||.- .-.|-||..|+||+-++|...
T Consensus 5 ~TkV~Y~~ddE---~tPY~~~Ip~~~-~~iTL~dFK~~l~-kr~~~---nYryfFK~~d~dfgvVkeEI~dD~~~LP~~e 76 (106)
T 3pz8_A 5 DTKIIYHMDEE---ETPDLVKLPVAP-ERVTLADFKNVLS-NRPVH---AYKFFFKSMDQDFGVVKEEIFDDNAKLPCFN 76 (106)
T ss_dssp CEEEEEECTTC---SSCEEEEESSCS-SSCBHHHHHHTCT-TSCGG---GBCCEEEEEETTTEEEEEECCCTTCBCCCBT
T ss_pred ceEEEEECCCC---CCceEEEccCCc-ccccHHHHHHHHh-cCCCc---cceEEEeecCcccCeeeeEecCCcccccccC
Confidence 35799999864 789999999874 6899999998762 23433 354445543 445899999999999999999
Q ss_pred CeeEEe
Q 009447 111 DEYVLK 116 (534)
Q Consensus 111 ~eYVLK 116 (534)
|-+|.+
T Consensus 77 GkIv~w 82 (106)
T 3pz8_A 77 GRVVSW 82 (106)
T ss_dssp TBEEEE
T ss_pred CEEEEE
Confidence 999865
No 4
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=26.19 E-value=52 Score=30.28 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=43.2
Q ss_pred ceeeEEEEEecCCcCCCCeeEEecCC--CCCCccHHHHHHHHHH-----hhCCCCccceeeeeeccccCcceEe
Q 009447 31 RKVPVVYYICRNRQLEHPHFIEVPLS--SRDGLYLRDVIDRLNV-----LRGRGMASMYSWSCKRSYKNGFVWH 97 (534)
Q Consensus 31 rkv~VvYyL~r~g~leHPH~ieV~~~--s~~gl~LrDV~~rL~~-----lRG~gM~~~ysWs~KR~YKngfvW~ 97 (534)
.-.-|||||+++.+ -++.-+.+. ..+++.|.+|+..|+. |+|| |-+|-.-.=|+-+-|=||.
T Consensus 108 ~d~~v~~~lsHG~~---g~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~gK--PKlffiqACRg~~~g~v~~ 176 (178)
T 2h54_A 108 SDSTFLVFMSHGIR---EGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDK--PKVIIIQACRGDSPGVVWF 176 (178)
T ss_dssp CSCEEEEEESCBCS---SCEECTTCCSSSCCEECHHHHHHHHSTTTCGGGTTS--CEEEEEESCSSSBCCCCCC
T ss_pred CCEEEEEEecCCCC---CeEEeecCCcccCcEEEHHHHHHHHhhcCChhhcCC--ceEEEEECCCCCCCCCccC
Confidence 45679999998754 123333321 1247999999998864 5565 8888888778888888885
No 5
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=20.09 E-value=78 Score=26.41 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=21.3
Q ss_pred eeEEecCCCC--------CCccHHHHHHHHHHhhCC
Q 009447 49 HFIEVPLSSR--------DGLYLRDVIDRLNVLRGR 76 (534)
Q Consensus 49 H~ieV~~~s~--------~gl~LrDV~~rL~~lRG~ 76 (534)
++|.|.++.. .|++|||.+..+-.+||=
T Consensus 2 ~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L 37 (77)
T 1c1y_B 2 NTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL 37 (77)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC
T ss_pred ceEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC
Confidence 4555665543 599999999998888876
No 6
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=19.82 E-value=1.8e+02 Score=24.71 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCccHHHHHHHHHHhhCCCCccc-eeeeeeccccCcceEeecCCCCccccCCCCeeEEe
Q 009447 59 DGLYLRDVIDRLNVLRGRGMASM-YSWSCKRSYKNGFVWHDLCEDDLILPAHGDEYVLK 116 (534)
Q Consensus 59 ~gl~LrDV~~rL~~lRG~gM~~~-ysWs~KR~YKngfvW~Dl~ddD~I~P~~~~eYVLK 116 (534)
.|++|||.+..+-.+||=- |.+ --.+.-.+.+.--=| |.-|-.+.++|..+.
T Consensus 26 pG~tlrdaL~KaLk~R~L~-pe~C~Vy~~~~~~~~~IdW-----dtDi~~L~~eEL~Ve 78 (86)
T 1wxm_A 26 DGMSVYDSLDKALKVRGLN-QDCCVVYRLIKGRKTVTAW-----DTAIAPLDGEELIVE 78 (86)
T ss_dssp SSCBSHHHHHHHHHTTTCC-SSSEEEEEESSSCEEEECS-----SSBSTTCSSCEEEEE
T ss_pred CCcCHHHHHHHHHHHcCCC-HHHeEEEEcCCCCccccch-----hHhhhhccCcEEEEE
Confidence 5999999999998888864 333 222222222221124 444556788887764
No 7
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=17.32 E-value=2.3e+02 Score=25.90 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=41.3
Q ss_pred cCCc-CCCCeeEEecCCCCCCccHHHHHHHHHHhhCCCC----------ccc-eeeeeeccccCcce--EeecCCCCccc
Q 009447 41 RNRQ-LEHPHFIEVPLSSRDGLYLRDVIDRLNVLRGRGM----------ASM-YSWSCKRSYKNGFV--WHDLCEDDLIL 106 (534)
Q Consensus 41 r~g~-leHPH~ieV~~~s~~gl~LrDV~~rL~~lRG~gM----------~~~-ysWs~KR~YKngfv--W~Dl~ddD~I~ 106 (534)
.+|+ |--||+||+++-.++=|.=..+.+.....=-..| +++ .-|+|+-.-+..++ -.|++++-|++
T Consensus 34 ~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~~idas~~~~f~vV~~~e~akie~~Y~d~~~~~~~tk~~~Ite~Gf~V 113 (136)
T 1c76_A 34 GKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVV 113 (136)
T ss_dssp TTCCEEECCCCEEEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEECTTCEEEEEEEETTTTEEEEEEEECCSSCEEC
T ss_pred CCCCEEeccccEEEecCcCceecHHHHHHHHHHHhhhhhcCceEEEecCCCcEEEEEehhhhcccccceeeeeccCceec
Confidence 3454 6679999999988765554443333322222223 233 56998655544443 35888888888
Q ss_pred cC
Q 009447 107 PA 108 (534)
Q Consensus 107 P~ 108 (534)
|-
T Consensus 114 Pd 115 (136)
T 1c76_A 114 PD 115 (136)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 8
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=14.86 E-value=15 Score=31.59 Aligned_cols=33 Identities=33% Similarity=0.636 Sum_probs=23.6
Q ss_pred CcccccccccCCcccceeeeccCCcccCCcceeeEEEEEe-cCCcCCCCe
Q 009447 1 METRMKKYRQVSPERAKVWTEKSPKYHQLTRKVPVVYYIC-RNRQLEHPH 49 (534)
Q Consensus 1 ME~r~rr~r~~SPeR~kv~~~~~~k~~~~~rkv~VvYyL~-r~g~leHPH 49 (534)
||+--|-+.-+||+.||.|+.. ++ .+|.|||-|
T Consensus 74 meidvrtrkvtspdeakrwike----------------fseeggslehhh 107 (110)
T 2kpo_A 74 MEIDVRTRKVTSPDEAKRWIKE----------------FSEEGGSLEHHH 107 (110)
T ss_dssp TTCCEEEEECSSHHHHHHHHHH----------------HHHTTSSSSCCS
T ss_pred hceeeeeeecCChHHHHHHHHH----------------HhhccCCccccc
Confidence 5554444567999999999864 23 467888876
No 9
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=14.73 E-value=64 Score=32.07 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=36.9
Q ss_pred ceeeEEEEEecCCcCCCCeeEEecCCCC-CCccHHHHHHHHHH-----hhCCCCccceeeeeecc
Q 009447 31 RKVPVVYYICRNRQLEHPHFIEVPLSSR-DGLYLRDVIDRLNV-----LRGRGMASMYSWSCKRS 89 (534)
Q Consensus 31 rkv~VvYyL~r~g~leHPH~ieV~~~s~-~gl~LrDV~~rL~~-----lRG~gM~~~ysWs~KR~ 89 (534)
.-.-|||||+++.+..+++.|- ... +.+.|.||+.-|+. |+|| |-+|-.-.=|+
T Consensus 127 ~D~~vv~ilSHG~~~~g~g~i~---g~D~~~v~l~~I~~~f~~~~CpsL~gK--PKlffiQACRG 186 (316)
T 2fp3_A 127 TECFVMVLMTHGNSVEGKEKVE---FRDGSVVDMQKIKDHFQTAKCPYLVNK--PKVLMFPFARG 186 (316)
T ss_dssp CSCEEEEEESCEECCTTCCEEE---CTTSCEEEHHHHHHTTSTTTCGGGTTS--CEEEEESCC--
T ss_pred CCEEEEEEccCCCccCCCCEEE---eecCcEEeHHHHHHHhccccChhhcCC--ceEEEEecCCC
Confidence 4567999999998998887662 322 35899999888864 5555 66665544444
No 10
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=14.02 E-value=1.5e+02 Score=22.80 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=12.1
Q ss_pred CCccHHHHHHHHHH
Q 009447 59 DGLYLRDVIDRLNV 72 (534)
Q Consensus 59 ~gl~LrDV~~rL~~ 72 (534)
+|.++.|+++.|..
T Consensus 19 ~~~tv~~ll~~L~~ 32 (74)
T 3rpf_C 19 KANDLKELRAILQE 32 (74)
T ss_dssp ECSSHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHH
Confidence 57899999999974
Done!