Query 009448
Match_columns 534
No_of_seqs 149 out of 233
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 13:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03763 Remorin_C: Remorin, C 100.0 6E-35 1.3E-39 258.3 15.9 110 419-528 2-111 (111)
2 PF03763 Remorin_C: Remorin, C 96.6 0.041 8.8E-07 49.7 11.9 79 442-520 3-81 (111)
3 PRK09174 F0F1 ATP synthase sub 82.8 31 0.00067 34.2 13.1 44 468-511 134-177 (204)
4 TIGR01933 hflK HflK protein. H 76.0 24 0.00053 35.0 10.2 7 422-428 155-161 (261)
5 PRK13454 F0F1 ATP synthase sub 73.6 42 0.0009 32.4 10.8 49 463-511 107-155 (181)
6 cd03404 Band_7_HflK Band_7_Hfl 68.3 41 0.00089 33.5 9.7 32 486-517 208-239 (266)
7 PF10376 Mei5: Double-strand r 65.7 65 0.0014 32.6 10.5 62 444-506 129-190 (221)
8 PRK06569 F0F1 ATP synthase sub 65.6 1.3E+02 0.0029 29.0 12.9 63 439-502 41-103 (155)
9 PRK07353 F0F1 ATP synthase sub 65.4 90 0.002 28.2 10.6 48 463-510 81-128 (140)
10 PRK13455 F0F1 ATP synthase sub 64.7 85 0.0018 30.1 10.8 73 445-517 85-158 (184)
11 PRK14475 F0F1 ATP synthase sub 64.4 90 0.0019 29.5 10.8 73 445-517 68-141 (167)
12 PRK00247 putative inner membra 61.5 1.4E+02 0.003 33.3 12.9 13 427-439 292-304 (429)
13 COG5269 ZUO1 Ribosome-associat 61.0 53 0.0011 35.0 9.1 84 434-517 231-314 (379)
14 PRK13461 F0F1 ATP synthase sub 59.6 1.2E+02 0.0027 28.2 10.6 34 475-508 93-126 (159)
15 PRK14471 F0F1 ATP synthase sub 58.5 1.3E+02 0.0028 28.2 10.6 51 467-517 88-139 (164)
16 PRK14474 F0F1 ATP synthase sub 58.5 1.3E+02 0.0029 30.6 11.4 55 427-485 43-99 (250)
17 PRK05759 F0F1 ATP synthase sub 58.0 1.5E+02 0.0032 27.2 10.8 42 468-509 85-126 (156)
18 PRK13453 F0F1 ATP synthase sub 57.5 1.8E+02 0.0039 27.8 11.6 73 445-517 76-149 (173)
19 CHL00118 atpG ATP synthase CF0 57.2 1.7E+02 0.0037 27.4 13.1 65 447-511 82-146 (156)
20 TIGR03321 alt_F1F0_F0_B altern 57.0 1.6E+02 0.0034 29.6 11.6 10 428-437 44-53 (246)
21 KOG4661 Hsp27-ERE-TATA-binding 56.6 36 0.00078 39.3 7.5 39 430-468 622-660 (940)
22 PRK06231 F0F1 ATP synthase sub 56.0 1.4E+02 0.003 29.6 10.8 90 428-517 87-179 (205)
23 PRK09173 F0F1 ATP synthase sub 55.8 1.6E+02 0.0035 27.4 10.7 46 472-517 87-133 (159)
24 PRK13460 F0F1 ATP synthase sub 55.4 1.9E+02 0.0041 27.5 11.6 90 428-517 55-147 (173)
25 PF10211 Ax_dynein_light: Axon 55.3 2.1E+02 0.0046 28.0 12.8 81 437-518 96-183 (189)
26 KOG1103 Predicted coiled-coil 54.1 1.1E+02 0.0023 33.8 10.3 47 449-495 155-211 (561)
27 PF00430 ATP-synt_B: ATP synth 54.0 1.4E+02 0.003 26.3 9.5 28 472-499 84-111 (132)
28 PRK14472 F0F1 ATP synthase sub 53.4 2.1E+02 0.0045 27.2 13.1 83 428-510 57-141 (175)
29 PRK06231 F0F1 ATP synthase sub 52.5 2.4E+02 0.0053 27.9 14.0 37 456-492 139-175 (205)
30 PRK14473 F0F1 ATP synthase sub 52.1 1.9E+02 0.0041 27.1 10.6 90 428-517 47-139 (164)
31 PRK13428 F0F1 ATP synthase sub 52.0 2.6E+02 0.0057 30.8 13.1 50 468-517 82-132 (445)
32 TIGR01069 mutS2 MutS2 family p 51.3 3.1E+02 0.0067 32.5 14.2 11 11-21 78-89 (771)
33 PRK13428 F0F1 ATP synthase sub 51.1 3.8E+02 0.0082 29.6 14.2 34 462-495 98-131 (445)
34 PRK13455 F0F1 ATP synthase sub 51.1 2.3E+02 0.005 27.1 14.0 16 469-484 131-146 (184)
35 PRK09174 F0F1 ATP synthase sub 49.9 2.7E+02 0.0059 27.7 11.7 79 439-518 84-162 (204)
36 PTZ00121 MAEBL; Provisional 49.4 2.1E+02 0.0045 36.9 12.6 9 391-399 1261-1269(2084)
37 PRK13453 F0F1 ATP synthase sub 48.9 2.5E+02 0.0053 26.8 14.0 16 469-484 122-137 (173)
38 CHL00019 atpF ATP synthase CF0 48.8 2.5E+02 0.0055 26.9 14.0 47 465-511 102-148 (184)
39 PRK00409 recombination and DNA 48.8 3.1E+02 0.0066 32.6 13.7 11 11-21 81-91 (782)
40 PTZ00121 MAEBL; Provisional 48.0 2.7E+02 0.0058 36.0 13.3 20 448-467 1598-1617(2084)
41 PRK00409 recombination and DNA 47.2 2.6E+02 0.0057 33.1 12.9 36 459-494 553-588 (782)
42 PF09755 DUF2046: Uncharacteri 46.4 4.1E+02 0.0088 28.6 14.2 75 421-496 81-155 (310)
43 PRK14475 F0F1 ATP synthase sub 45.7 2.7E+02 0.0058 26.4 14.0 34 462-495 107-140 (167)
44 PF10211 Ax_dynein_light: Axon 44.8 2.5E+02 0.0055 27.5 10.5 42 480-521 138-179 (189)
45 COG3064 TolA Membrane protein 44.5 4.6E+02 0.01 28.7 14.0 34 428-461 156-189 (387)
46 TIGR00570 cdk7 CDK-activating 43.3 4.2E+02 0.0091 28.5 12.5 24 420-443 116-139 (309)
47 PRK07352 F0F1 ATP synthase sub 43.3 3E+02 0.0064 26.1 14.0 71 445-515 77-148 (174)
48 TIGR03319 YmdA_YtgF conserved 43.1 5.4E+02 0.012 29.1 15.2 10 445-454 75-84 (514)
49 PRK07352 F0F1 ATP synthase sub 43.1 3E+02 0.0065 26.1 13.1 15 463-477 73-87 (174)
50 PRK10930 FtsH protease regulat 42.9 1.7E+02 0.0037 32.3 10.0 46 471-516 262-307 (419)
51 KOG0577 Serine/threonine prote 42.6 1.9E+02 0.004 34.4 10.4 83 427-509 816-902 (948)
52 TIGR01144 ATP_synt_b ATP synth 42.6 2.6E+02 0.0057 25.4 10.8 67 453-519 39-105 (147)
53 CHL00019 atpF ATP synthase CF0 42.2 3.2E+02 0.0069 26.2 13.1 11 486-496 112-122 (184)
54 KOG3654 Uncharacterized CH dom 42.1 68 0.0015 36.6 6.8 42 452-504 398-441 (708)
55 KOG0163 Myosin class VI heavy 41.2 3.6E+02 0.0077 32.8 12.4 25 469-493 950-974 (1259)
56 PRK06568 F0F1 ATP synthase sub 40.7 2.7E+02 0.0058 26.8 9.8 63 462-524 75-142 (154)
57 KOG4848 Extracellular matrix-a 40.6 3.9E+02 0.0085 27.3 11.1 76 429-506 132-214 (225)
58 PF15290 Syntaphilin: Golgi-lo 39.8 2E+02 0.0044 30.7 9.4 56 428-496 104-165 (305)
59 cd07663 BAR_SNX5 The Bin/Amphi 39.7 4.3E+02 0.0093 27.0 12.9 38 418-457 121-161 (218)
60 KOG2412 Nuclear-export-signal 39.5 2.9E+02 0.0062 32.0 11.1 25 482-506 250-274 (591)
61 PRK08476 F0F1 ATP synthase sub 39.4 3.2E+02 0.0069 25.4 13.8 36 473-508 82-117 (141)
62 TIGR01069 mutS2 MutS2 family p 39.2 5E+02 0.011 30.9 13.5 18 428-445 507-524 (771)
63 PF11559 ADIP: Afadin- and alp 38.3 2.5E+02 0.0055 25.9 9.0 38 440-477 112-149 (151)
64 PTZ00491 major vault protein; 38.0 3.4E+02 0.0074 32.9 11.9 48 421-468 703-750 (850)
65 TIGR03319 YmdA_YtgF conserved 37.8 6.5E+02 0.014 28.5 16.2 6 465-470 80-85 (514)
66 PRK08476 F0F1 ATP synthase sub 36.3 3.5E+02 0.0077 25.0 12.8 44 459-502 57-100 (141)
67 KOG4326 Mitochondrial F1F0-ATP 36.3 1.4E+02 0.003 26.2 6.3 25 439-463 32-56 (81)
68 PRK12704 phosphodiesterase; Pr 35.5 7.1E+02 0.015 28.3 15.8 6 446-451 82-87 (520)
69 KOG2072 Translation initiation 34.8 8.3E+02 0.018 30.0 14.1 12 460-471 771-782 (988)
70 PRK14474 F0F1 ATP synthase sub 33.7 5.3E+02 0.012 26.3 14.0 26 463-488 103-128 (250)
71 PF11875 DUF3395: Domain of un 33.6 1.6E+02 0.0034 28.0 7.0 41 468-508 9-49 (151)
72 KOG1962 B-cell receptor-associ 33.1 2.4E+02 0.0052 28.8 8.5 40 455-495 152-191 (216)
73 PF12127 YdfA_immunity: SigmaW 32.6 85 0.0018 33.5 5.4 27 454-480 229-255 (316)
74 PF04012 PspA_IM30: PspA/IM30 32.6 4.8E+02 0.01 25.4 12.3 24 431-454 50-73 (221)
75 PRK02292 V-type ATP synthase s 32.3 3.7E+02 0.0081 25.6 9.4 21 465-485 35-55 (188)
76 KOG2129 Uncharacterized conser 32.0 2.2E+02 0.0048 32.1 8.6 32 463-494 145-176 (552)
77 PF13124 DUF3963: Protein of u 31.7 22 0.00047 27.2 0.8 10 171-180 13-22 (40)
78 KOG4715 SWI/SNF-related matrix 30.9 6.7E+02 0.015 27.5 11.6 46 441-487 223-271 (410)
79 KOG1029 Endocytic adaptor prot 30.5 8.7E+02 0.019 29.8 13.3 39 421-462 328-366 (1118)
80 PF05957 DUF883: Bacterial pro 30.1 3.5E+02 0.0076 23.1 9.5 54 459-512 3-56 (94)
81 CHL00118 atpG ATP synthase CF0 30.1 4.6E+02 0.01 24.5 13.8 46 459-504 72-117 (156)
82 TIGR03321 alt_F1F0_F0_B altern 29.5 6E+02 0.013 25.6 14.0 24 466-489 106-129 (246)
83 PF09731 Mitofilin: Mitochondr 29.4 8.5E+02 0.018 27.3 14.5 18 469-486 334-351 (582)
84 PRK14473 F0F1 ATP synthase sub 28.6 4.9E+02 0.011 24.3 14.0 24 466-489 109-132 (164)
85 KOG3756 Pinin (desmosome-assoc 28.2 8.2E+02 0.018 26.7 12.3 28 499-526 213-240 (340)
86 PF12128 DUF3584: Protein of u 28.1 1E+03 0.022 29.7 14.1 42 433-474 657-698 (1201)
87 PF10186 Atg14: UV radiation r 27.9 6E+02 0.013 25.1 13.2 7 469-475 99-105 (302)
88 KOG1029 Endocytic adaptor prot 27.6 6.4E+02 0.014 30.8 11.6 46 428-474 412-457 (1118)
89 PRK06568 F0F1 ATP synthase sub 27.3 5.7E+02 0.012 24.6 11.6 38 459-496 54-91 (154)
90 KOG4055 Uncharacterized conser 27.1 3E+02 0.0065 27.9 7.9 33 477-509 108-140 (213)
91 PRK12705 hypothetical protein; 26.6 1E+03 0.022 27.3 12.9 7 427-433 56-62 (508)
92 KOG0163 Myosin class VI heavy 26.3 7.7E+02 0.017 30.2 11.9 13 15-27 255-268 (1259)
93 COG1390 NtpE Archaeal/vacuolar 26.3 3.7E+02 0.0081 26.7 8.4 24 468-491 39-62 (194)
94 PRK03963 V-type ATP synthase s 26.1 2.8E+02 0.0061 26.5 7.4 26 458-483 18-43 (198)
95 PF04888 SseC: Secretion syste 26.1 2.2E+02 0.0047 29.2 7.1 54 461-521 3-56 (306)
96 PF08232 Striatin: Striatin fa 26.0 4.1E+02 0.0089 24.8 8.2 51 427-479 21-71 (134)
97 PF11554 DUF3232: Protein of u 25.8 2.4E+02 0.0051 27.5 6.7 58 435-495 51-108 (152)
98 PRK13665 hypothetical protein; 25.3 1.6E+02 0.0035 31.4 5.9 40 478-517 236-275 (316)
99 PRK11029 FtsH protease regulat 25.1 2.4E+02 0.0053 30.1 7.4 51 471-521 225-275 (334)
100 KOG0742 AAA+-type ATPase [Post 25.1 1.1E+03 0.024 27.2 20.4 27 314-340 27-53 (630)
101 PF06034 DUF919: Nucleopolyhed 24.6 1.6E+02 0.0036 24.7 4.7 41 444-484 20-61 (62)
102 PF10147 CR6_interact: Growth 24.3 7.9E+02 0.017 25.2 13.7 73 433-507 125-204 (217)
103 PF05103 DivIVA: DivIVA protei 23.8 37 0.0008 30.0 1.0 59 458-517 43-101 (131)
104 PF06936 Selenoprotein_S: Sele 23.6 6.8E+02 0.015 25.0 9.7 9 516-524 160-168 (190)
105 PF07352 Phage_Mu_Gam: Bacteri 23.0 2.6E+02 0.0056 26.1 6.4 40 429-468 14-53 (149)
106 PF12777 MT: Microtubule-bindi 22.9 5.9E+02 0.013 26.9 9.7 8 517-524 109-116 (344)
107 cd03404 Band_7_HflK Band_7_Hfl 22.6 7.7E+02 0.017 24.5 11.1 13 464-476 208-220 (266)
108 PTZ00266 NIMA-related protein 22.3 1.6E+03 0.034 28.0 18.6 13 3-15 15-27 (1021)
109 KOG0338 ATP-dependent RNA heli 22.2 4.5E+02 0.0098 30.7 8.9 45 427-473 557-606 (691)
110 PRK11637 AmiB activator; Provi 22.0 1E+03 0.022 25.7 13.8 16 458-473 72-87 (428)
111 PRK14471 F0F1 ATP synthase sub 21.8 6.6E+02 0.014 23.5 14.0 28 461-488 104-131 (164)
112 PRK07353 F0F1 ATP synthase sub 21.6 6E+02 0.013 22.9 13.9 14 463-476 59-72 (140)
113 PRK12472 hypothetical protein; 21.4 1.3E+03 0.028 26.6 12.9 50 454-503 232-289 (508)
114 PF06428 Sec2p: GDP/GTP exchan 20.8 6.3E+02 0.014 22.8 8.4 38 452-489 6-43 (100)
115 PF12925 APP_E2: E2 domain of 20.1 9.1E+02 0.02 24.4 10.4 65 441-507 40-105 (193)
116 PRK08404 V-type ATP synthase s 20.1 6.3E+02 0.014 22.5 9.0 39 475-513 46-84 (103)
No 1
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00 E-value=6e-35 Score=258.27 Aligned_cols=110 Identities=51% Similarity=0.742 Sum_probs=107.3
Q ss_pred HHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 419 RIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAA 498 (534)
Q Consensus 419 k~~~EarAaAWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~ 498 (534)
+..++++++|||++|++|+++||+|++++|++|||+||+|||++|+|+|++||+||+.++|||+|+|+.||++||++|++
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCCCCCC
Q 009448 499 AEARKSRDAERTAAQGEYIRQTGQIPSSHF 528 (534)
Q Consensus 499 AEA~r~ee~~Ka~EkA~kiR~TGk~Pss~f 528 (534)
++++|++++++++++|++||+||++|++||
T Consensus 82 aea~r~~~~~k~~ekA~~~R~tG~~P~~~f 111 (111)
T PF03763_consen 82 AEARRGEEIAKAEEKAAKIRATGKVPSKCF 111 (111)
T ss_pred HHHHHhhHHHhHHHHHHHHHhCCCCCcccC
Confidence 999999999999999999999999999765
No 2
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=96.58 E-value=0.041 Score=49.70 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 009448 442 KREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQT 520 (534)
Q Consensus 442 qREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~T 520 (534)
+..+++|.+||..+++|+....++.|.++.-==..--.|..-+|..+..+.|.+|+.+.++-.+.+..+..+|.-.|..
T Consensus 3 ~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 3 EEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999977642222222233445566778889999999999999999888888877764
No 3
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=82.81 E-value=31 Score=34.17 Aligned_cols=44 Identities=34% Similarity=0.291 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009448 468 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 511 (534)
Q Consensus 468 ~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~ 511 (534)
...+..+..+.+.+...++.++...+..|..+...-...+..++
T Consensus 134 ~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A 177 (204)
T PRK09174 134 AKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETA 177 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555444444443
No 4
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=75.97 E-value=24 Score=34.99 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=2.9
Q ss_pred HHHhhhh
Q 009448 422 YEKRASA 428 (534)
Q Consensus 422 ~EarAaA 428 (534)
++.+..|
T Consensus 155 ~~~~~~a 161 (261)
T TIGR01933 155 FDDVIIA 161 (261)
T ss_pred HHHHHHH
Confidence 4444443
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=73.59 E-value=42 Score=32.39 Aligned_cols=49 Identities=33% Similarity=0.300 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009448 463 MRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 511 (534)
Q Consensus 463 mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~ 511 (534)
....+...+..+..+.......++.++..-+..|..+...-...+..++
T Consensus 107 ~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA 155 (181)
T PRK13454 107 RAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTA 155 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555556666666666666666665555555544443
No 6
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=68.29 E-value=41 Score=33.45 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009448 486 SMSRQRSEEKRAAAEARKSRDAERTAAQGEYI 517 (534)
Q Consensus 486 A~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~ki 517 (534)
+.|+..|+..+..|++.+..+..+++-.|..|
T Consensus 208 ~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~ 239 (266)
T cd03404 208 PKARGEAARIIQEAEAYKEEVIAEAQGEAARF 239 (266)
T ss_pred HHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444555555555555555555555444443
No 7
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=65.65 E-value=65 Score=32.65 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 009448 444 EEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRD 506 (534)
Q Consensus 444 EEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee 506 (534)
++-+++.|+. .|++.+.+++..+..|.+...-.+.+++|.+..++..-.+||..++..-.+-
T Consensus 129 ~~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL 190 (221)
T PF10376_consen 129 EELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYEL 190 (221)
T ss_pred chhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788887 6789999999999999999999999999999999999999998776654433
No 8
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=65.64 E-value=1.3e+02 Score=29.02 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 439 ARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEAR 502 (534)
Q Consensus 439 ~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~ 502 (534)
.|.++-...|..=+. .|++|+......|..|..-|.++.+-.......+...|+..|+.+++.
T Consensus 41 ~R~~~I~~~L~~Ae~-~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 41 NRQTNIQDNITQADT-LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333 344555555556666666666655555555555666666666666555
No 9
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=65.41 E-value=90 Score=28.18 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009448 463 MRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERT 510 (534)
Q Consensus 463 mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka 510 (534)
....+...+.+++.+.+.....+..++...+..+..+...-..++...
T Consensus 81 ~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~l 128 (140)
T PRK07353 81 EAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDAL 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444433
No 10
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=64.71 E-value=85 Score=30.06 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009448 445 EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 517 (534)
Q Consensus 445 EaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 517 (534)
+.++..+...-+...+...+..+...++.+..+.......++.++...+..|..+...-..++...+ +.|.++
T Consensus 85 e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~ki 158 (184)
T PRK13455 85 ERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADV 158 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333334444444555556666666666666666776666666666666666655544 444444
No 11
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=64.45 E-value=90 Score=29.54 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009448 445 EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 517 (534)
Q Consensus 445 EaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 517 (534)
+.++..+...-..-.+......+...+..++.+.+.....+..++...+..|..+...-..++...+ +.|.++
T Consensus 68 e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~ki 141 (167)
T PRK14475 68 KAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETV 141 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333334444444555555555566666666666666666666666666666554 444444
No 12
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=61.47 E-value=1.4e+02 Score=33.25 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=5.8
Q ss_pred hhHHHHHHhhHHH
Q 009448 427 SAWAEAEKSKHIA 439 (534)
Q Consensus 427 aAWEeAEkAK~~~ 439 (534)
..|.+-++.|-..
T Consensus 292 ~~~~~~~~~~~~~ 304 (429)
T PRK00247 292 AQYREKQKEKKAF 304 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 3455444444333
No 13
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=60.98 E-value=53 Score=34.99 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=50.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009448 434 KSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 513 (534)
Q Consensus 434 kAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~Ek 513 (534)
+-|...--.+++.+|..||-+--|.+++.....-..-++.|+...-+-.--++.+.++|.|....+.......+.-+..-
T Consensus 231 RIK~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k~~Kk~ikna~kd 310 (379)
T COG5269 231 RIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKD 310 (379)
T ss_pred chhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 33555555678889999998887766655543322223666666666666667777777666555544443334334444
Q ss_pred HHHH
Q 009448 514 GEYI 517 (534)
Q Consensus 514 A~ki 517 (534)
++++
T Consensus 311 ~~yf 314 (379)
T COG5269 311 ADYF 314 (379)
T ss_pred hccc
Confidence 4444
No 14
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=59.63 E-value=1.2e+02 Score=28.16 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009448 475 AQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 508 (534)
Q Consensus 475 A~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~ 508 (534)
..+.+....-+..++...+..+..+...-..++.
T Consensus 93 ~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~ 126 (159)
T PRK13461 93 KEAHEEADLIIERAKLEAQREKEKAEYEIKNQAV 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444433333333
No 15
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=58.52 E-value=1.3e+02 Score=28.17 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009448 467 EAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 517 (534)
Q Consensus 467 E~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 517 (534)
+...+..+..+.+.....++.++...+..++.+...-..++...+ +.|.++
T Consensus 88 ~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~ki 139 (164)
T PRK14471 88 EKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKV 139 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555666666666666666665555555544 444444
No 16
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=58.52 E-value=1.3e+02 Score=30.55 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=23.7
Q ss_pred hhHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 427 SAWAEAEKSKHIARFKRE--EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKI 485 (534)
Q Consensus 427 aAWEeAEkAK~~~RyqRE--EaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKl 485 (534)
...++++..+..+.-.++ +.++..++... ..-+.....+.++.+.+++++.+..+
T Consensus 43 ~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea----~~ii~~A~~eA~~~~~~il~~A~~ea 99 (250)
T PRK14474 43 NRWQDAEQRQQEAGQEAERYRQKQQSLEQQR----ASFMAQAQEAADEQRQHLLNEAREDV 99 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777765554432222 33344444333 23333333444444444444443333
No 17
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=57.99 E-value=1.5e+02 Score=27.23 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 009448 468 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAER 509 (534)
Q Consensus 468 ~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~K 509 (534)
...+..+..+.+.....+..++...+..+..+...-..++..
T Consensus 85 ~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~ 126 (156)
T PRK05759 85 QIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVAD 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 18
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=57.47 E-value=1.8e+02 Score=27.75 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009448 445 EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 517 (534)
Q Consensus 445 EaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 517 (534)
+.++..++.....-.+......+...+...+.+.+.....++.++...+..+..+...-..++...+ ..|.++
T Consensus 76 e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kl 149 (173)
T PRK13453 76 KQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKV 149 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444444445555555556666666666666666666666666666555555544 344443
No 19
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=57.20 E-value=1.7e+02 Score=27.39 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009448 447 KIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 511 (534)
Q Consensus 447 KI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~ 511 (534)
++..+...-+.-.+..-...+...+..++.+.+.....+..++...+..++.+...-..++...+
T Consensus 82 ~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA 146 (156)
T CHL00118 82 ELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLS 146 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444555555555544555554444444444433
No 20
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.02 E-value=1.6e+02 Score=29.62 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=4.9
Q ss_pred hHHHHHHhhH
Q 009448 428 AWAEAEKSKH 437 (534)
Q Consensus 428 AWEeAEkAK~ 437 (534)
.-++++..+-
T Consensus 44 ~l~~Ae~~~~ 53 (246)
T TIGR03321 44 ELADADTKKR 53 (246)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 21
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=56.63 E-value=36 Score=39.29 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 430 AEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEA 468 (534)
Q Consensus 430 EeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~ 468 (534)
+-.|+..+..+-.+|+-.-.+||-..++..++++-+||.
T Consensus 622 e~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~ 660 (940)
T KOG4661|consen 622 EAEERQRIREEREREQRRKAAVEREELERLKAERLRLER 660 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777788888889999988888887777663
No 22
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=56.03 E-value=1.4e+02 Score=29.61 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=39.8
Q ss_pred hHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009448 428 AWAEAEKSKHIA--RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 505 (534)
Q Consensus 428 AWEeAEkAK~~~--RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~e 505 (534)
..++++..+-.. ..+.-+.++..+...-+.-.+...+..+...+.....+.+.....+..++...+..++.+..+-..
T Consensus 87 ~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ 166 (205)
T PRK06231 87 EINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQK 166 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555433332 222223444444433333333333333333334444444555555555555555555555555555
Q ss_pred HHHHHH-HHHHHH
Q 009448 506 DAERTA-AQGEYI 517 (534)
Q Consensus 506 e~~Ka~-EkA~ki 517 (534)
++...+ +.|.++
T Consensus 167 ei~~lAv~iA~ki 179 (205)
T PRK06231 167 ESVELAMLAAEEL 179 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 555444 444443
No 23
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=55.82 E-value=1.6e+02 Score=27.39 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009448 472 QIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 517 (534)
Q Consensus 472 KkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 517 (534)
..+..+.+-+...+..++...+..|..+...-..++...+ +.|.++
T Consensus 87 ~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~ki 133 (159)
T PRK09173 87 EAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKL 133 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444555555555555555555555544 444443
No 24
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=55.43 E-value=1.9e+02 Score=27.46 Aligned_cols=90 Identities=8% Similarity=0.037 Sum_probs=52.9
Q ss_pred hHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009448 428 AWAEAEKSKHIA--RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 505 (534)
Q Consensus 428 AWEeAEkAK~~~--RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~e 505 (534)
..++++..+-.. ....-+.++..++..-..-.+...+..+...+..++.+.+.....+..++...+..+..+...-..
T Consensus 55 ~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ 134 (173)
T PRK13460 55 DINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQN 134 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556665444332 222234455555555555555555555566666667777777777777777777777777777666
Q ss_pred HHHHHH-HHHHHH
Q 009448 506 DAERTA-AQGEYI 517 (534)
Q Consensus 506 e~~Ka~-EkA~ki 517 (534)
++...+ +.|.++
T Consensus 135 ei~~lA~~~a~ki 147 (173)
T PRK13460 135 QIVEMTITIASKV 147 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 666655 444443
No 25
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=55.32 E-value=2.1e+02 Score=28.00 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 009448 437 HIARFKREEIKIQAWESRQKAKLEA-------EMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAER 509 (534)
Q Consensus 437 ~~~RyqREEaKI~AWEN~QKAKAEA-------~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~K 509 (534)
..++|+..-..-.++-..+...++. ++..++.+++....+ +..+.+++..+.+..++.++..+.++.+++..
T Consensus 96 ~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~-~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~ 174 (189)
T PF10211_consen 96 TLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQ-VQELKNKCEQLEKREEELRQEEEKKHQEEIDF 174 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444444444333333433 333333333333322 23466788888888888888888888777776
Q ss_pred HHHHHHHHh
Q 009448 510 TAAQGEYIR 518 (534)
Q Consensus 510 a~EkA~kiR 518 (534)
.+..-..++
T Consensus 175 lk~~~~ql~ 183 (189)
T PF10211_consen 175 LKKQNQQLK 183 (189)
T ss_pred HHHHHHHHH
Confidence 655544443
No 26
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=54.08 E-value=1.1e+02 Score=33.78 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 009448 449 QAWESRQKAKLEAEMRRIEAEVEQIRAQAQ----------AKMVKKISMSRQRSEEK 495 (534)
Q Consensus 449 ~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~----------EKm~NKlA~a~rkAEEk 495 (534)
..+|-.+|.|||-+-+|+|+.||..|.+-. .|+.+|++....+|++-
T Consensus 155 iEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei 211 (561)
T KOG1103|consen 155 IEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEI 211 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 468889999999999999999976664422 57788888888888764
No 27
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=54.04 E-value=1.4e+02 Score=26.27 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 472 QIRAQAQAKMVKKISMSRQRSEEKRAAA 499 (534)
Q Consensus 472 KkRA~a~EKm~NKlA~a~rkAEEkRA~A 499 (534)
.++..+.+.+...+..++...+..+..+
T Consensus 84 ~~~~ea~~~~~~~~~~a~~~i~~e~~~a 111 (132)
T PF00430_consen 84 EILAEAEKEAERIIEQAEAEIEQEKEKA 111 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 28
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=53.36 E-value=2.1e+02 Score=27.23 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=36.8
Q ss_pred hHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009448 428 AWAEAEKSKHIA--RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 505 (534)
Q Consensus 428 AWEeAEkAK~~~--RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~e 505 (534)
..++++..+-.. ....-+.++..++..-..-.+..-...+...+..++.+.+.....+..++...+..+..+...-..
T Consensus 57 ~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~ 136 (175)
T PRK14472 57 SIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRN 136 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443332 222223444444433333333333333444444444444555555555555555555555444444
Q ss_pred HHHHH
Q 009448 506 DAERT 510 (534)
Q Consensus 506 e~~Ka 510 (534)
++...
T Consensus 137 ~i~~l 141 (175)
T PRK14472 137 EVADL 141 (175)
T ss_pred HHHHH
Confidence 44443
No 29
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.54 E-value=2.4e+02 Score=27.86 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 456 KAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRS 492 (534)
Q Consensus 456 KAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkA 492 (534)
+..++..+.+.+.++|+.+..+.+.++..+..+--.+
T Consensus 139 ~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~i 175 (205)
T PRK06231 139 NRQANLIIFQARQEIEKERRELKEQLQKESVELAMLA 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555554443333
No 30
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=52.09 E-value=1.9e+02 Score=27.05 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=41.4
Q ss_pred hHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009448 428 AWAEAEKSKHIAR--FKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 505 (534)
Q Consensus 428 AWEeAEkAK~~~R--yqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~e 505 (534)
..++++..+-... -..-+..+..+...-+.-.+......+...+.....+.+.....+..++...+..+..+...-..
T Consensus 47 ~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~ 126 (164)
T PRK14473 47 SLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKS 126 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443321 11223334444433333333333344444444455555555555555555555555555555555
Q ss_pred HHHHHH-HHHHHH
Q 009448 506 DAERTA-AQGEYI 517 (534)
Q Consensus 506 e~~Ka~-EkA~ki 517 (534)
++...+ +.|.++
T Consensus 127 ~i~~la~~~a~ki 139 (164)
T PRK14473 127 QIADLVTLTASRV 139 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 554443 444443
No 31
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=51.96 E-value=2.6e+02 Score=30.81 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Q 009448 468 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYI 517 (534)
Q Consensus 468 ~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ki 517 (534)
...+.++..+.+.....+..++...+..|..+...-..++...+ +.|.++
T Consensus 82 ~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~ki 132 (445)
T PRK13428 82 RIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGEL 132 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555544443 444444
No 32
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.25 E-value=3.1e+02 Score=32.54 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=6.8
Q ss_pred cCCCChhh-hhh
Q 009448 11 TGIISPSK-LRM 21 (534)
Q Consensus 11 ~g~~SP~k-LR~ 21 (534)
++.++|.. |..
T Consensus 78 g~~l~~~e~l~~ 89 (771)
T TIGR01069 78 GGIVKGLEYILV 89 (771)
T ss_pred CCcCChHHHHHH
Confidence 45588876 443
No 33
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=51.13 E-value=3.8e+02 Score=29.64 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 462 EMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEK 495 (534)
Q Consensus 462 ~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEk 495 (534)
.+.+.+.++|+.|.++++.+++++..+--.+-++
T Consensus 98 i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~k 131 (445)
T PRK13428 98 IKVQGARQVQLLRAQLTRQLRLELGHESVRQAGE 131 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446777777777777777776655444443
No 34
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=51.08 E-value=2.3e+02 Score=27.12 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 009448 469 EVEQIRAQAQAKMVKK 484 (534)
Q Consensus 469 KLEKkRA~a~EKm~NK 484 (534)
.++..|.+++..++..
T Consensus 131 ~I~~ek~~a~~~l~~~ 146 (184)
T PRK13455 131 QIASAEAAAVKAVRDR 146 (184)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 35
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=49.90 E-value=2.7e+02 Score=27.66 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 009448 439 ARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIR 518 (534)
Q Consensus 439 ~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR 518 (534)
.|.++-...|..=+. .+.+|+..+...|.+|..-|.++.+-+.+-...++..+++.++.+++.-......++......|
T Consensus 84 ~R~~~I~~~L~~Ae~-~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek 162 (204)
T PRK09174 84 TRRDRIAQDLDQAAR-LKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIK 162 (204)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554443 3456777777788888888888877777777777777777776666655555555444444433
No 36
>PTZ00121 MAEBL; Provisional
Probab=49.42 E-value=2.1e+02 Score=36.87 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=5.6
Q ss_pred ccccccccc
Q 009448 391 NIAAWASKD 399 (534)
Q Consensus 391 ~IaaWaske 399 (534)
.+|.||.+.
T Consensus 1261 r~a~~A~r~ 1269 (2084)
T PTZ00121 1261 RMAHFARRQ 1269 (2084)
T ss_pred HHHHHHHHh
Confidence 456677665
No 37
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=48.95 E-value=2.5e+02 Score=26.82 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 009448 469 EVEQIRAQAQAKMVKK 484 (534)
Q Consensus 469 KLEKkRA~a~EKm~NK 484 (534)
.+++.+..+++.++..
T Consensus 122 ~I~~ek~~a~~~l~~e 137 (173)
T PRK13453 122 EINSQKERAIADINNQ 137 (173)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 38
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.83 E-value=2.5e+02 Score=26.91 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009448 465 RIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 511 (534)
Q Consensus 465 KiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~ 511 (534)
..+...+...+.+.+.....+..++...+..+..+...-..++...+
T Consensus 102 ~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~la 148 (184)
T CHL00019 102 EIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLA 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555555555555555555554443
No 39
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.77 E-value=3.1e+02 Score=32.59 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=7.1
Q ss_pred cCCCChhhhhh
Q 009448 11 TGIISPSKLRM 21 (534)
Q Consensus 11 ~g~~SP~kLR~ 21 (534)
+|.++|..|..
T Consensus 81 g~~l~~~eL~~ 91 (782)
T PRK00409 81 GGVLSGDELLE 91 (782)
T ss_pred CCCCCHHHHHH
Confidence 45588877644
No 40
>PTZ00121 MAEBL; Provisional
Probab=48.04 E-value=2.7e+02 Score=35.97 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009448 448 IQAWESRQKAKLEAEMRRIE 467 (534)
Q Consensus 448 I~AWEN~QKAKAEA~mrKiE 467 (534)
+.-+|..+++|||..-++-|
T Consensus 1598 ~~~~~~~~~~kae~~kk~ee 1617 (2084)
T PTZ00121 1598 MKLYEEEKKMKAEEAKKAEE 1617 (2084)
T ss_pred hhhhhhhhHHHHHHHHHHHH
Confidence 34466667777776555444
No 41
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.16 E-value=2.6e+02 Score=33.13 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 459 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEE 494 (534)
Q Consensus 459 AEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEE 494 (534)
.+.+.++++.+-++...++.+++..-|..+++.+++
T Consensus 553 l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~ 588 (782)
T PRK00409 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444443
No 42
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.44 E-value=4.1e+02 Score=28.65 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=48.7
Q ss_pred HHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 421 EYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKR 496 (534)
Q Consensus 421 ~~EarAaAWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkR 496 (534)
.+-+|+.+ -..|+.-+...|+++|.-++-=-..+-.+...+--.+|..||+.....+.+|+.+|..+.+.-..+.
T Consensus 81 ~LlKkl~~-l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q 155 (310)
T PF09755_consen 81 TLLKKLQQ-LKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQ 155 (310)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444444 3456677778899988888744444445555555566777777777778888888877765444343
No 43
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=45.69 E-value=2.7e+02 Score=26.35 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 462 EMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEK 495 (534)
Q Consensus 462 ~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEk 495 (534)
.+...+..+++.|.++++.+++.+..+--.+-++
T Consensus 107 ~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~k 140 (167)
T PRK14475 107 RAEMAERKIAQAEAQAAADVKAAAVDLAAQAAET 140 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666666555544444
No 44
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.75 E-value=2.5e+02 Score=27.50 Aligned_cols=42 Identities=7% Similarity=0.303 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Q 009448 480 KMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTG 521 (534)
Q Consensus 480 Km~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~TG 521 (534)
.+..+++.+..+.+......++.+..+..+-.+...++++.+
T Consensus 138 ~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~ 179 (189)
T PF10211_consen 138 ELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQN 179 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555566666666554
No 45
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=44.49 E-value=4.6e+02 Score=28.71 Aligned_cols=34 Identities=38% Similarity=0.247 Sum_probs=13.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 428 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEA 461 (534)
Q Consensus 428 AWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA 461 (534)
+=+|+.+.|...-.+++-..+.-=+..-++|||+
T Consensus 156 a~aEA~k~Ka~aeAkkkAe~a~kA~eeAkaKAe~ 189 (387)
T COG3064 156 AAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEA 189 (387)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333333333444444
No 46
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.33 E-value=4.2e+02 Score=28.48 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=17.6
Q ss_pred HHHHHhhhhHHHHHHhhHHHHHHH
Q 009448 420 IEYEKRASAWAEAEKSKHIARFKR 443 (534)
Q Consensus 420 ~~~EarAaAWEeAEkAK~~~RyqR 443 (534)
..+++++..|+...+..|...-.+
T Consensus 116 ~~te~~l~~y~~~n~~~I~~n~~~ 139 (309)
T TIGR00570 116 ENTKKKIETYQKENKDVIQKNKEK 139 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 458888999999888777754333
No 47
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=43.27 E-value=3e+02 Score=26.14 Aligned_cols=71 Identities=20% Similarity=0.159 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHH
Q 009448 445 EIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA-AQGE 515 (534)
Q Consensus 445 EaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~ 515 (534)
+.++..|...-..-.+..-...+...+..+..+.+.+...+..++...+..+..+...-..++...+ +.|.
T Consensus 77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~ 148 (174)
T PRK07352 77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAE 148 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444333333333344444444445555555555555555555555555555555544433 4444
No 48
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=43.12 E-value=5.4e+02 Score=29.13 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 009448 445 EIKIQAWESR 454 (534)
Q Consensus 445 EaKI~AWEN~ 454 (534)
+.+|+..|+.
T Consensus 75 e~rL~qrE~r 84 (514)
T TIGR03319 75 RNELQRLERR 84 (514)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 49
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=43.07 E-value=3e+02 Score=26.12 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 009448 463 MRRIEAEVEQIRAQA 477 (534)
Q Consensus 463 mrKiE~KLEKkRA~a 477 (534)
+...+.+|+.-|.++
T Consensus 73 ~~~~~~~L~~a~~ea 87 (174)
T PRK07352 73 LAEAQQKLAQAQQEA 87 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 50
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=42.86 E-value=1.7e+02 Score=32.26 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009448 471 EQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEY 516 (534)
Q Consensus 471 EKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~k 516 (534)
++.+.++...-..-+..|+..|+...+.|+|.+.+.+++++-.|+.
T Consensus 262 ~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~r 307 (419)
T PRK10930 262 QQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVAR 307 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444444444444455666666666666666666666666554443
No 51
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.64 E-value=1.9e+02 Score=34.37 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=60.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 427 SAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVE----QIRAQAQAKMVKKISMSRQRSEEKRAAAEAR 502 (534)
Q Consensus 427 aAWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLE----KkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~ 502 (534)
+.|.++|---+....+.|..-+.|.++.-|+.+|++..+.-.+|| -.|+-+.+||-.+++.++..--+.--....+
T Consensus 816 de~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir~l~er 895 (948)
T KOG0577|consen 816 DEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIRSLLER 895 (948)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHHHHhhh
Confidence 568889988888899999999999999999988887665544444 5678888888888877765444433455555
Q ss_pred hhhHHHH
Q 009448 503 KSRDAER 509 (534)
Q Consensus 503 r~ee~~K 509 (534)
+..++..
T Consensus 896 ~~~e~e~ 902 (948)
T KOG0577|consen 896 HAREIEA 902 (948)
T ss_pred hHHHHhh
Confidence 5544433
No 52
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=42.63 E-value=2.6e+02 Score=25.39 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 009448 453 SRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQ 519 (534)
Q Consensus 453 N~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~ 519 (534)
...+.+|+..+...+.+|+.-+..+.+-+..--..+.+..++.++.+++....-...+......-+.
T Consensus 39 ~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~ 105 (147)
T TIGR01144 39 ERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKE 105 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 53
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=42.16 E-value=3.2e+02 Score=26.21 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 009448 486 SMSRQRSEEKR 496 (534)
Q Consensus 486 A~a~rkAEEkR 496 (534)
+.++..|+...
T Consensus 112 ~~A~~ea~~~~ 122 (184)
T CHL00019 112 NQAKEDLERLE 122 (184)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 54
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=42.07 E-value=68 Score=36.64 Aligned_cols=42 Identities=40% Similarity=0.528 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009448 452 ESRQKAKLEAEMRR--IEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKS 504 (534)
Q Consensus 452 EN~QKAKAEA~mrK--iE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ 504 (534)
|..|+..-||..|| +|.+.|++|- .++|+|||-|+..|..+.
T Consensus 398 ekqqrraeear~rkqqleae~e~kre-----------earrkaeeer~~keee~a 441 (708)
T KOG3654|consen 398 EKQQRRAEEARRRKQQLEAEKEQKRE-----------EARRKAEEERAPKEEEVA 441 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhHhhhcchhhhhh
Confidence 44455555566555 4556666654 456777777776665543
No 55
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=41.18 E-value=3.6e+02 Score=32.82 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 469 EVEQIRAQAQAKMVKKISMSRQRSE 493 (534)
Q Consensus 469 KLEKkRA~a~EKm~NKlA~a~rkAE 493 (534)
..|++|+++.-.++.|++..+++|+
T Consensus 950 ~ee~k~~k~e~e~kRK~eEeqr~~q 974 (1259)
T KOG0163|consen 950 EEEKKRAKAEMETKRKAEEEQRKAQ 974 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666654
No 56
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=40.72 E-value=2.7e+02 Score=26.82 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhcCCCC
Q 009448 462 EMRRIEAEVEQIRAQAQAKMVKK----ISMSRQRSEEKRAAAEARKSRDAERTA-AQGEYIRQTGQIP 524 (534)
Q Consensus 462 ~mrKiE~KLEKkRA~a~EKm~NK----lA~a~rkAEEkRA~AEA~r~ee~~Ka~-EkA~kiR~TGk~P 524 (534)
-|+..+...++.+..+.++.... ++.+++..+..|..|-..-..++.... +-|.+|-..-++.
T Consensus 75 Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~~~~~~~ 142 (154)
T PRK06568 75 MIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYFQSVKLS 142 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444445555555444444 444444444444444444444544443 5566665544443
No 57
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=40.59 E-value=3.9e+02 Score=27.33 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=39.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 009448 429 WAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQ-------AKMVKKISMSRQRSEEKRAAAEA 501 (534)
Q Consensus 429 WEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~-------EKm~NKlA~a~rkAEEkRA~AEA 501 (534)
.-+++++|++.+|-...++.++=--.+-++|.|+..++|.-++..+-..- +++..= .-++.++++++.-||
T Consensus 132 ~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~em--LqqkEkeekK~~Kea 209 (225)
T KOG4848|consen 132 FREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEM--LQQKEKEEKKAVKEA 209 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHH--HHHHHHHHHHHHHHH
Confidence 45677778877777666665554444445555555444433333221110 111111 124556777777777
Q ss_pred HhhhH
Q 009448 502 RKSRD 506 (534)
Q Consensus 502 ~r~ee 506 (534)
+|.+.
T Consensus 210 Krk~k 214 (225)
T KOG4848|consen 210 KRKEK 214 (225)
T ss_pred HHHHH
Confidence 76554
No 58
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.85 E-value=2e+02 Score=30.70 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=39.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 009448 428 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAK------MVKKISMSRQRSEEKR 496 (534)
Q Consensus 428 AWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EK------m~NKlA~a~rkAEEkR 496 (534)
-|-|.| ..|-||...-= .|..+|++|..-+|-||+.++|| |...|..-.+|-|-.-
T Consensus 104 DWIEEE-------CHRVEAQLALK------EARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLL 165 (305)
T PF15290_consen 104 DWIEEE-------CHRVEAQLALK------EARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLL 165 (305)
T ss_pred HHHHHH-------HHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHH
Confidence 687766 56666665432 36678899999999999998876 5556666666665543
No 59
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=39.66 E-value=4.3e+02 Score=26.97 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHHHHHHhhh---hHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 009448 418 ERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKA 457 (534)
Q Consensus 418 ~k~~~EarAa---AWEeAEkAK~~~RyqREEaKI~AWEN~QKA 457 (534)
.|..+..|+. .|+.++++-...|++ ..+|..||..++.
T Consensus 121 ~K~ll~rR~ral~~~e~A~~~L~KaR~k--~kev~~aE~~~~e 161 (218)
T cd07663 121 AKDLLYRRARALADYENSNKALDKARLK--SKDVKQAEAHQQE 161 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 3444455553 678888777777764 4557777777764
No 60
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=39.50 E-value=2.9e+02 Score=32.01 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Q 009448 482 VKKISMSRQRSEEKRAAAEARKSRD 506 (534)
Q Consensus 482 ~NKlA~a~rkAEEkRA~AEA~r~ee 506 (534)
+.+++.+..+++++|..++.++..+
T Consensus 250 qekiR~~eekqeee~ke~e~~~~k~ 274 (591)
T KOG2412|consen 250 QEKIRAEEEKQEEERKEAEEQAEKE 274 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666554443
No 61
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=39.42 E-value=3.2e+02 Score=25.37 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009448 473 IRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 508 (534)
Q Consensus 473 kRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~ 508 (534)
.+..+.+.....++.++..++..++.+.++-..+..
T Consensus 82 a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~ 117 (141)
T PRK08476 82 AIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQ 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555554444444444444433
No 62
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.22 E-value=5e+02 Score=30.87 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=8.3
Q ss_pred hHHHHHHhhHHHHHHHHH
Q 009448 428 AWAEAEKSKHIARFKREE 445 (534)
Q Consensus 428 AWEeAEkAK~~~RyqREE 445 (534)
..+..+..++..+.+++.
T Consensus 507 ~~~~~~~~~li~~L~~~~ 524 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALE 524 (771)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 344444555544444433
No 63
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.30 E-value=2.5e+02 Score=25.87 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 440 RFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQA 477 (534)
Q Consensus 440 RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a 477 (534)
..+.+..+...|-...+++.+.+|||.|.++++++.++
T Consensus 112 ~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 112 QEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777888888888888888888888877654
No 64
>PTZ00491 major vault protein; Provisional
Probab=38.04 E-value=3.4e+02 Score=32.89 Aligned_cols=48 Identities=29% Similarity=0.258 Sum_probs=39.1
Q ss_pred HHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 421 EYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEA 468 (534)
Q Consensus 421 ~~EarAaAWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~ 468 (534)
++++..+|=|-+-.+|..+...-|-+.|.+=-+.+.|+..|+-.+||.
T Consensus 703 el~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~ 750 (850)
T PTZ00491 703 ELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEA 750 (850)
T ss_pred HHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhh
Confidence 455566788888889999999889999988888888888888777774
No 65
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=37.82 E-value=6.5e+02 Score=28.52 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.3
Q ss_pred HHHHHH
Q 009448 465 RIEAEV 470 (534)
Q Consensus 465 KiE~KL 470 (534)
+.|.+|
T Consensus 80 qrE~rL 85 (514)
T TIGR03319 80 RLERRL 85 (514)
T ss_pred HHHHHH
Confidence 333333
No 66
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=36.34 E-value=3.5e+02 Score=25.05 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 459 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEAR 502 (534)
Q Consensus 459 AEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~ 502 (534)
|+......|..|..-|.++..-...-++.++..++..++.+.+.
T Consensus 57 a~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~ 100 (141)
T PRK08476 57 VSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAE 100 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444333
No 67
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=36.30 E-value=1.4e+02 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 439 ARFKREEIKIQAWESRQKAKLEAEM 463 (534)
Q Consensus 439 ~RyqREEaKI~AWEN~QKAKAEA~m 463 (534)
++....+++|..|+.++||++.|++
T Consensus 32 ~~l~~~~e~~Rei~a~eKav~da~~ 56 (81)
T KOG4326|consen 32 RQLREYHEDIREIDAHEKAVADAEE 56 (81)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 4556668899999999999988754
No 68
>PRK12704 phosphodiesterase; Provisional
Probab=35.46 E-value=7.1e+02 Score=28.27 Aligned_cols=6 Identities=17% Similarity=0.158 Sum_probs=2.2
Q ss_pred HHHHHH
Q 009448 446 IKIQAW 451 (534)
Q Consensus 446 aKI~AW 451 (534)
.+|+.-
T Consensus 82 ~~L~qr 87 (520)
T PRK12704 82 NELQKL 87 (520)
T ss_pred HHHHHH
Confidence 333333
No 69
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=34.84 E-value=8.3e+02 Score=30.00 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 009448 460 EAEMRRIEAEVE 471 (534)
Q Consensus 460 EA~mrKiE~KLE 471 (534)
+.++.+.|.+||
T Consensus 771 ~e~~~~~ea~le 782 (988)
T KOG2072|consen 771 EEKLKQFEARLE 782 (988)
T ss_pred HHHHHHHHHHHH
Confidence 344555555555
No 70
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=33.71 E-value=5.3e+02 Score=26.30 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 463 MRRIEAEVEQIRAQAQAKMVKKISMS 488 (534)
Q Consensus 463 mrKiE~KLEKkRA~a~EKm~NKlA~a 488 (534)
+.+....++..+.+++..+++++...
T Consensus 103 ~~~a~~~ie~Ek~~a~~~L~~~v~~l 128 (250)
T PRK14474 103 RDEWLEQLEREKQEFFKALQQQTGQQ 128 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555555443
No 71
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=33.63 E-value=1.6e+02 Score=28.02 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009448 468 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 508 (534)
Q Consensus 468 ~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~ 508 (534)
.++++.|....+.+..+.+.+....+.|+..++.++..|..
T Consensus 9 ~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E~~ 49 (151)
T PF11875_consen 9 REIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKEEE 49 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555555555666666665555543
No 72
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.06 E-value=2.4e+02 Score=28.83 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 455 QKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEK 495 (534)
Q Consensus 455 QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEk 495 (534)
+.++..+++.+++.+||++ ...+|+..++.....+.+|+.
T Consensus 152 ~~~~~~~~~~kL~~el~~~-~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKK-QKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 3466666667777666643 344555566665555555543
No 73
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=32.59 E-value=85 Score=33.46 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 454 RQKAKLEAEMRRIEAEVEQIRAQAQAK 480 (534)
Q Consensus 454 ~QKAKAEA~mrKiE~KLEKkRA~a~EK 480 (534)
+|-.+|||.++-.+.|.|..|+-+...
T Consensus 229 Lq~dQAeADk~iAqAkAEeRRA~AvA~ 255 (316)
T PF12127_consen 229 LQTDQAEADKRIAQAKAEERRAMAVAR 255 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888877777777777665543
No 74
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.57 E-value=4.8e+02 Score=25.40 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=15.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 009448 431 EAEKSKHIARFKREEIKIQAWESR 454 (534)
Q Consensus 431 eAEkAK~~~RyqREEaKI~AWEN~ 454 (534)
.+...++..+|..-+..|..|+..
T Consensus 50 ~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 50 MANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777764
No 75
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=32.27 E-value=3.7e+02 Score=25.56 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009448 465 RIEAEVEQIRAQAQAKMVKKI 485 (534)
Q Consensus 465 KiE~KLEKkRA~a~EKm~NKl 485 (534)
..+.+.++.+..+.++.....
T Consensus 35 ea~~~a~~i~~~~~~~a~~e~ 55 (188)
T PRK02292 35 EAEADAEEILEDREAEAEREI 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433333333
No 76
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.99 E-value=2.2e+02 Score=32.10 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 463 MRRIEAEVEQIRAQAQAKMVKKISMSRQRSEE 494 (534)
Q Consensus 463 mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEE 494 (534)
-=++|.-||+-+-....|++|||...+-+---
T Consensus 145 k~~lEq~leqeqef~vnKlm~ki~Klen~t~~ 176 (552)
T KOG2129|consen 145 KLPLEQLLEQEQEFFVNKLMNKIRKLENKTLL 176 (552)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 33566777777777888888888776655433
No 77
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=31.66 E-value=22 Score=27.17 Aligned_cols=10 Identities=50% Similarity=1.162 Sum_probs=9.0
Q ss_pred chhHHHhhhh
Q 009448 171 WNDAEKWIMN 180 (534)
Q Consensus 171 WdDAeKWI~~ 180 (534)
.||-||||-|
T Consensus 13 fddiqkwirn 22 (40)
T PF13124_consen 13 FDDIQKWIRN 22 (40)
T ss_pred HHHHHHHHHH
Confidence 5899999987
No 78
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=30.93 E-value=6.7e+02 Score=27.53 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 009448 441 FKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQ---AKMVKKISM 487 (534)
Q Consensus 441 yqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~---EKm~NKlA~ 487 (534)
.+-....+++.--+|. |.||+|..||.+-+.++.+.+ +-|+|.|.+
T Consensus 223 MqvlkrQv~SL~~HQ~-KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr 271 (410)
T KOG4715|consen 223 MQVLKRQVQSLMVHQR-KLEAELLQIEERHQEKKRKFLESTDSFNNELKR 271 (410)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444445555555553 677777777777764444433 345555544
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.50 E-value=8.7e+02 Score=29.79 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=18.9
Q ss_pred HHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 421 EYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAE 462 (534)
Q Consensus 421 ~~EarAaAWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~ 462 (534)
++|.|--+-+|-++..-..+.++| =..||..++..-|++
T Consensus 328 ELerRRq~leeqqqreree~eqkE---reE~ekkererqEqE 366 (1118)
T KOG1029|consen 328 ELERRRQALEEQQQREREEVEQKE---REEEEKKERERQEQE 366 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 556666666665543332222222 234666666655554
No 80
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.14 E-value=3.5e+02 Score=23.14 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009448 459 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAA 512 (534)
Q Consensus 459 AEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~E 512 (534)
++.+|+.+-..++.......+...+++..+..++++.-..+..+-.+....+.+
T Consensus 3 l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~ 56 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQARE 56 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777766666666666666666665555544444443333333
No 81
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=30.08 E-value=4.6e+02 Score=24.49 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009448 459 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKS 504 (534)
Q Consensus 459 AEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ 504 (534)
|+..+...|.+|..-|.++.+-+.+--+.+++..++.++.|++.-.
T Consensus 72 a~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~ 117 (156)
T CHL00118 72 ANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYID 117 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554444444444444444444443333
No 82
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=29.50 E-value=6e+02 Score=25.57 Aligned_cols=24 Identities=4% Similarity=0.113 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 466 IEAEVEQIRAQAQAKMVKKISMSR 489 (534)
Q Consensus 466 iE~KLEKkRA~a~EKm~NKlA~a~ 489 (534)
....++..+..+++.+++.+...-
T Consensus 106 a~~~ie~E~~~a~~~l~~ei~~la 129 (246)
T TIGR03321 106 WQEALRREQAALSDELRRRTGAEV 129 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555554433
No 83
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=29.42 E-value=8.5e+02 Score=27.30 Aligned_cols=18 Identities=6% Similarity=0.254 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009448 469 EVEQIRAQAQAKMVKKIS 486 (534)
Q Consensus 469 KLEKkRA~a~EKm~NKlA 486 (534)
+|++....+.+++.|.|.
T Consensus 334 eL~~~~~~~~~~l~~~l~ 351 (582)
T PF09731_consen 334 ELKRQEEAHEEHLKNELR 351 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444433
No 84
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=28.62 E-value=4.9e+02 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 466 IEAEVEQIRAQAQAKMVKKISMSR 489 (534)
Q Consensus 466 iE~KLEKkRA~a~EKm~NKlA~a~ 489 (534)
.+..+++.|..++..+++.+..+-
T Consensus 109 a~~~I~~ek~~a~~~L~~~i~~la 132 (164)
T PRK14473 109 ARAQAEQERQRMLSELKSQIADLV 132 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544433
No 85
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=28.18 E-value=8.2e+02 Score=26.73 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=13.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCCCC
Q 009448 499 AEARKSRDAERTAAQGEYIRQTGQIPSS 526 (534)
Q Consensus 499 AEA~r~ee~~Ka~EkA~kiR~TGk~Pss 526 (534)
|+++...+=.-.-.++.++-+|-.-|..
T Consensus 213 a~~q~~e~w~~~~kk~s~~IRTKTkPhl 240 (340)
T KOG3756|consen 213 ALAQLFEEWNEHNKKISNYIRTKTKPHL 240 (340)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCce
Confidence 3444433333333444555555556663
No 86
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.11 E-value=1e+03 Score=29.71 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=29.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 433 EKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIR 474 (534)
Q Consensus 433 EkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkR 474 (534)
......+.....+.+|..|-...+.+++.++..++..++...
T Consensus 657 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 657 DLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777888888888888888888887776555443
No 87
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.86 E-value=6e+02 Score=25.10 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 009448 469 EVEQIRA 475 (534)
Q Consensus 469 KLEKkRA 475 (534)
+|+.++.
T Consensus 99 ~l~~~~~ 105 (302)
T PF10186_consen 99 SLEQRRS 105 (302)
T ss_pred HHHHHHH
Confidence 3443333
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.61 E-value=6.4e+02 Score=30.81 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=30.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 428 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIR 474 (534)
Q Consensus 428 AWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkR 474 (534)
.||.+.+..+.+.-.||...|.- +|.+|+..+-++.-|..|+...-
T Consensus 412 ewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 412 EWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888777777766666666654 77777777766666655554443
No 89
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.28 E-value=5.7e+02 Score=24.63 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 459 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKR 496 (534)
Q Consensus 459 AEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkR 496 (534)
|+.-+...|.+|..-|.++.+-+..--..+.+..++.+
T Consensus 54 A~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~ 91 (154)
T PRK06568 54 AALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKT 91 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333333333333333
No 90
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.14 E-value=3e+02 Score=27.90 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 009448 477 AQAKMVKKISMSRQRSEEKRAAAEARKSRDAER 509 (534)
Q Consensus 477 a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~K 509 (534)
+.+-|+.+|..-++.||++-|.-.++|..+-.+
T Consensus 108 ~daefq~r~ek~~kaaEeKTaKKRaKRqk~Kq~ 140 (213)
T KOG4055|consen 108 LDAEFQIRLEKNQKAAEEKTAKKRAKRQKKKQK 140 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555444333
No 91
>PRK12705 hypothetical protein; Provisional
Probab=26.63 E-value=1e+03 Score=27.27 Aligned_cols=7 Identities=14% Similarity=-0.362 Sum_probs=3.7
Q ss_pred hhHHHHH
Q 009448 427 SAWAEAE 433 (534)
Q Consensus 427 aAWEeAE 433 (534)
.||++..
T Consensus 56 ~~~~~~~ 62 (508)
T PRK12705 56 EAKELLL 62 (508)
T ss_pred HHHHHHH
Confidence 4565544
No 92
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=26.30 E-value=7.7e+02 Score=30.23 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=8.7
Q ss_pred Chhhhhhhh-cCCC
Q 009448 15 SPSKLRMKL-IGPH 27 (534)
Q Consensus 15 SP~kLR~~l-lG~~ 27 (534)
+|--||-+| ||.-
T Consensus 255 as~dl~~kL~L~~p 268 (1259)
T KOG0163|consen 255 ASPDLRKKLSLGKP 268 (1259)
T ss_pred CCHHHHHHhccCCc
Confidence 344788888 7754
No 93
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=26.25 E-value=3.7e+02 Score=26.67 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 468 AEVEQIRAQAQAKMVKKISMSRQR 491 (534)
Q Consensus 468 ~KLEKkRA~a~EKm~NKlA~a~rk 491 (534)
.+++.+...++.++.+...+.++.
T Consensus 39 ~~~~~~~~~~~~~~~~ea~~~~~~ 62 (194)
T COG1390 39 REAEEAIEEILRKAEKEAERERQR 62 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 94
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=26.11 E-value=2.8e+02 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 458 KLEAEMRRIEAEVEQIRAQAQAKMVK 483 (534)
Q Consensus 458 KAEA~mrKiE~KLEKkRA~a~EKm~N 483 (534)
+|+.-+...+.+.++....+.++...
T Consensus 18 ea~~il~~A~~~a~~i~~~a~~~a~~ 43 (198)
T PRK03963 18 KIEYILEEAQKEAEKIKEEARKRAES 43 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 95
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=26.09 E-value=2.2e+02 Score=29.21 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Q 009448 461 AEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTG 521 (534)
Q Consensus 461 A~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~TG 521 (534)
+.+.+|-.++.....+...+..+++...+. .--....+++.+..+++++.+++|
T Consensus 3 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~~~~~~e~~~kaeeaqK~G 56 (306)
T PF04888_consen 3 ALLAELISKSSEESLKSKKEQIERASEAQE-------KKAEEKAEEIEEAQEKAEEAQKAG 56 (306)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666666666666666666666555544 222233445666667777777775
No 96
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=26.03 E-value=4.1e+02 Score=24.81 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=41.1
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 427 SAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQA 479 (534)
Q Consensus 427 aAWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~E 479 (534)
.+||. |++...+|.-..|....+.||+++.- ...++-||-.|-+.|+++..
T Consensus 21 ~~Wei-ERaEmkarIa~LEGE~r~~e~l~~dL-~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 21 NQWEI-ERAEMKARIAFLEGERRGQENLKKDL-KRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 67884 77888899999999999999988754 66788888888888887654
No 97
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=25.79 E-value=2.4e+02 Score=27.50 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 435 SKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEK 495 (534)
Q Consensus 435 AK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEk 495 (534)
.++..+.-++|..|+.|-+..-. .+.|-+-++|++-|..+++-+-..+..+.|.|+-.
T Consensus 51 ~~Y~~~V~~mE~~l~t~rfrleg---eeYRd~vE~LDr~RtnaH~a~ISd~kIlNR~aek~ 108 (152)
T PF11554_consen 51 KEYVLIVYRMEDQLQTWRFRLEG---EEYRDLVEELDRTRTNAHNAAISDCKILNRMAEKE 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCTS-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777788999999999886543 57889999999999999999999999999988754
No 98
>PRK13665 hypothetical protein; Provisional
Probab=25.27 E-value=1.6e+02 Score=31.39 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009448 478 QAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYI 517 (534)
Q Consensus 478 ~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~ki 517 (534)
.+.-.-....+|.+||++||+|-|+..|-.+++.|.=.+.
T Consensus 236 ~dQAEADk~iAqAkAEeRRAmAvA~EQEmkA~v~emrAkv 275 (316)
T PRK13665 236 TDQAEADKRIAQAKAEERRAMAVALEQEMKAKVQEMRAKV 275 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 99
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=25.11 E-value=2.4e+02 Score=30.13 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Q 009448 471 EQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTG 521 (534)
Q Consensus 471 EKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~TG 521 (534)
++|+|+-...-..-.+.+++.|+..|+.|+.....-.+++..++..+|..|
T Consensus 225 ~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aeg 275 (334)
T PRK11029 225 NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEG 275 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
No 100
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.08 E-value=1.1e+03 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=15.0
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCC
Q 009448 314 PSRTATPVGATTPLRSPTSSIPSTPRG 340 (534)
Q Consensus 314 pSRt~TP~~attP~rsp~~s~~stP~~ 340 (534)
-||-++|.-+++|.-+-.+..+++|+.
T Consensus 27 d~~f~~~~fs~sp~~~~pp~~~~~~~s 53 (630)
T KOG0742|consen 27 DSRFGFPGFSASPPPPLPPAQPGAPGS 53 (630)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 356778877777632223444444543
No 101
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=24.58 E-value=1.6e+02 Score=24.65 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 444 EEIKIQAWESRQKA-KLEAEMRRIEAEVEQIRAQAQAKMVKK 484 (534)
Q Consensus 444 EEaKI~AWEN~QKA-KAEA~mrKiE~KLEKkRA~a~EKm~NK 484 (534)
-..+++-||-++|. |=-.+++.++.+|.++|...+.-..++
T Consensus 20 l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~FLn~~v~~ 61 (62)
T PF06034_consen 20 LTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNFLNFGVNN 61 (62)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46778889998886 666789999999999999988776553
No 102
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=24.27 E-value=7.9e+02 Score=25.23 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=38.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009448 433 EKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQ-------AKMVKKISMSRQRSEEKRAAAEARKSR 505 (534)
Q Consensus 433 EkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~-------EKm~NKlA~a~rkAEEkRA~AEA~r~e 505 (534)
++++.+++|-...+++.+=...+++++.++-.+.|.-+|..|-+.- .+|+.-|+ ++..|++++.-++++..
T Consensus 125 ~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~--~kEkeeKKk~K~aKkk~ 202 (217)
T PF10147_consen 125 EIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQ--EKEKEEKKKKKEAKKKE 202 (217)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3444444444444444443444555666666666666666665442 34444443 55666777666666654
Q ss_pred HH
Q 009448 506 DA 507 (534)
Q Consensus 506 e~ 507 (534)
..
T Consensus 203 k~ 204 (217)
T PF10147_consen 203 KE 204 (217)
T ss_pred HH
Confidence 44
No 103
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.84 E-value=37 Score=30.05 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009448 458 KLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYI 517 (534)
Q Consensus 458 KAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~ki 517 (534)
.++.++..++.+|..-+. ..+.+.+.|..+++.|++..+.|+..-..-+..+...|..|
T Consensus 43 ~L~~~~~~l~~~l~~~~~-~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i 101 (131)
T PF05103_consen 43 ELKEEIEELQAQLEELRE-EEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEI 101 (131)
T ss_dssp HHHHHHHCCCCT------------------------------------------------
T ss_pred HHHHHHHHHHhhhhhhhh-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555444444433 24555666666666666666666655555555555555444
No 104
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=23.60 E-value=6.8e+02 Score=25.03 Aligned_cols=9 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHhhcCCCC
Q 009448 516 YIRQTGQIP 524 (534)
Q Consensus 516 kiR~TGk~P 524 (534)
-+|..|.-|
T Consensus 160 ~lr~~~yNP 168 (190)
T PF06936_consen 160 PLRGSDYNP 168 (190)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 345555555
No 105
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=23.01 E-value=2.6e+02 Score=26.11 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=22.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 429 WAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEA 468 (534)
Q Consensus 429 WEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~ 468 (534)
.-..+.+.+.+.+..+-+.|+.|-..+.+.....+..++.
T Consensus 14 ~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~ 53 (149)
T PF07352_consen 14 ELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEG 53 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666655555555555543
No 106
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.86 E-value=5.9e+02 Score=26.90 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=2.6
Q ss_pred HhhcCCCC
Q 009448 517 IRQTGQIP 524 (534)
Q Consensus 517 iR~TGk~P 524 (534)
||.-++.|
T Consensus 109 iks~~~PP 116 (344)
T PF12777_consen 109 IKSYANPP 116 (344)
T ss_dssp HHHSSS--
T ss_pred HHhhCCCc
Confidence 34444433
No 107
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=22.58 E-value=7.7e+02 Score=24.51 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 009448 464 RRIEAEVEQIRAQ 476 (534)
Q Consensus 464 rKiE~KLEKkRA~ 476 (534)
.+.|.+.++++..
T Consensus 208 ~~A~~ea~~~~~~ 220 (266)
T cd03404 208 PKARGEAARIIQE 220 (266)
T ss_pred HHhHhHHHHHHHH
Confidence 3333344444443
No 108
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=22.29 E-value=1.6e+03 Score=28.05 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=5.3
Q ss_pred cccccccccCCCC
Q 009448 3 YERIHKAQTGIIS 15 (534)
Q Consensus 3 yeri~k~q~g~~S 15 (534)
|+-|.+.-.|+|+
T Consensus 15 YeIl~kLG~GgFG 27 (1021)
T PTZ00266 15 YEVIKKIGNGRFG 27 (1021)
T ss_pred EEEEEEEecCCCe
Confidence 4444444334443
No 109
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.16 E-value=4.5e+02 Score=30.72 Aligned_cols=45 Identities=22% Similarity=0.099 Sum_probs=33.2
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 009448 427 SAWAEAEKSKHIARFKREEIKIQAWESR-----QKAKLEAEMRRIEAEVEQI 473 (534)
Q Consensus 427 aAWEeAEkAK~~~RyqREEaKI~AWEN~-----QKAKAEA~mrKiE~KLEKk 473 (534)
-.|+. ..|+..+...+|-.|++--.. +-.+||++|+|-|..||..
T Consensus 557 i~~~~--Iek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le~g 606 (691)
T KOG0338|consen 557 IPPEV--IEKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLEHG 606 (691)
T ss_pred CCHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Confidence 36776 457888888899888876444 3458889999988888643
No 110
>PRK11637 AmiB activator; Provisional
Probab=22.02 E-value=1e+03 Score=25.72 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 009448 458 KLEAEMRRIEAEVEQI 473 (534)
Q Consensus 458 KAEA~mrKiE~KLEKk 473 (534)
.++.++..++.+|+..
T Consensus 72 ~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 72 SLLAQLKKQEEAISQA 87 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555444
No 111
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=21.83 E-value=6.6e+02 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 461 AEMRRIEAEVEQIRAQAQAKMVKKISMS 488 (534)
Q Consensus 461 A~mrKiE~KLEKkRA~a~EKm~NKlA~a 488 (534)
..+.+.+..++..+..+...++..+..+
T Consensus 104 ~~~~~a~~~i~~ek~~a~~~l~~~i~~l 131 (164)
T PRK14471 104 KMIEQAKASIESEKNAAMAEIKNQVANL 131 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555554443
No 112
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=21.58 E-value=6e+02 Score=22.88 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 009448 463 MRRIEAEVEQIRAQ 476 (534)
Q Consensus 463 mrKiE~KLEKkRA~ 476 (534)
+...|.+|+.-|.+
T Consensus 59 ~~~~e~~L~~a~~e 72 (140)
T PRK07353 59 EAQYEQQLASARKQ 72 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 113
>PRK12472 hypothetical protein; Provisional
Probab=21.38 E-value=1.3e+03 Score=26.65 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009448 454 RQKAKLEAEMRRIEAEVEQI-----RAQ---AQAKMVKKISMSRQRSEEKRAAAEARK 503 (534)
Q Consensus 454 ~QKAKAEA~mrKiE~KLEKk-----RA~---a~EKm~NKlA~a~rkAEEkRA~AEA~r 503 (534)
..|+.++++|......|+.- +++ ..++.-++++.+..+.+..++.+++++
T Consensus 232 ~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 289 (508)
T PRK12472 232 RAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKR 289 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555555555555444332 222 334455555555555555555555544
No 114
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.78 E-value=6.3e+02 Score=22.81 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 452 ESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSR 489 (534)
Q Consensus 452 EN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~ 489 (534)
|..++.+||....+++.+||..=+.+++--.+-++.++
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar 43 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANKMVADAR 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999987766665554
No 115
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=20.13 E-value=9.1e+02 Score=24.40 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 009448 441 FKREEIKIQAWESRQKAKLEAEMRRIE-AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDA 507 (534)
Q Consensus 441 yqREEaKI~AWEN~QKAKAEA~mrKiE-~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~ 507 (534)
-+|+-..+..|+....--- .|++.+ .+.|.++....++|+.++......+..-|-..++-+.+.+
T Consensus 40 r~r~~~VmkeW~eaE~~~~--~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV 105 (193)
T PF12925_consen 40 RERMTKVMKEWSEAEERYK--ELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRV 105 (193)
T ss_dssp HHHHHHHHHHHHHHHHTTT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--hchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778877654322 344555 6889999999999999999999988888877776665554
No 116
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=20.12 E-value=6.3e+02 Score=22.54 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009448 475 AQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 513 (534)
Q Consensus 475 A~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~Ek 513 (534)
..+.+....-|..+++.++..+..+-..-..++......
T Consensus 46 ~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~ 84 (103)
T PRK08404 46 KKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVK 84 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555444433
Done!