Query 009448
Match_columns 534
No_of_seqs 149 out of 233
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 72.2 61 0.0021 31.1 13.4 14 521-534 192-205 (256)
2 2zuo_A MVP, major vault protei 59.6 1.5E+02 0.0051 34.2 15.0 40 428-467 715-754 (861)
3 3oja_B Anopheles plasmodium-re 52.7 2.2E+02 0.0075 29.6 15.6 48 478-525 539-586 (597)
4 3mq7_A Bone marrow stromal ant 45.9 1.7E+02 0.0057 26.3 10.3 57 449-505 36-100 (121)
5 2eqb_B RAB guanine nucleotide 41.5 1.7E+02 0.0059 25.3 12.8 54 427-489 22-75 (97)
6 3viq_A SWI5-dependent recombin 40.4 1.2E+02 0.004 27.0 8.3 63 454-516 7-69 (122)
7 3oja_A Leucine-rich immune mol 35.3 1.8E+02 0.006 29.8 10.0 61 434-499 412-472 (487)
8 3ljm_A Coil Ser L9C; de novo d 32.9 49 0.0017 22.9 3.6 22 450-471 2-25 (31)
9 3ni0_A Bone marrow stromal ant 29.2 2.9E+02 0.0097 24.1 8.9 48 449-496 29-87 (99)
10 3f1i_H Hepatocyte growth facto 26.6 2.2E+02 0.0074 24.8 7.4 47 463-514 50-96 (98)
11 3vkg_A Dynein heavy chain, cyt 26.4 5.6E+02 0.019 33.9 14.0 66 436-503 1917-1982(3245)
12 3mq9_A Bone marrow stromal ant 20.8 6.6E+02 0.023 25.3 12.2 16 165-180 137-152 (471)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=72.19 E-value=61 Score=31.15 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=8.1
Q ss_pred CCCCCCCCcccccC
Q 009448 521 GQIPSSHFTCCGWF 534 (534)
Q Consensus 521 Gk~Pss~f~Ccgcf 534 (534)
|-+|-.--.|-|||
T Consensus 192 avv~v~~~~C~GC~ 205 (256)
T 3na7_A 192 SIVTIKKQACGGCF 205 (256)
T ss_dssp SEEECBTTBCTTTC
T ss_pred eEEEeeCCccCCCC
Confidence 33454444677887
No 2
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=59.63 E-value=1.5e+02 Score=34.19 Aligned_cols=40 Identities=30% Similarity=0.245 Sum_probs=17.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 428 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIE 467 (534)
Q Consensus 428 AWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE 467 (534)
|=|..-.+|..++.+-|.+.|.+=-+...||++|+-.+||
T Consensus 715 aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~ 754 (861)
T 2zuo_A 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhh
Confidence 3444444444444444444444444444444444444444
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.67 E-value=2.2e+02 Score=29.60 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCC
Q 009448 478 QAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPS 525 (534)
Q Consensus 478 ~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~TGk~Ps 525 (534)
.+++.+++..++++-++++...++-+.+-....++.-..+.++.+-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 355557777777777777777766665555555566666677666654
No 4
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.94 E-value=1.7e+02 Score=26.32 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009448 449 QAWESRQKAKLEAE-----MRRIEAEVEQIRAQ---AQAKMVKKISMSRQRSEEKRAAAEARKSR 505 (534)
Q Consensus 449 ~AWEN~QKAKAEA~-----mrKiE~KLEKkRA~---a~EKm~NKlA~a~rkAEEkRA~AEA~r~e 505 (534)
++||.+..+.|+|. +..|-.-|+++++. -++++..+|....++-+++-+.+|..|.+
T Consensus 36 qAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 36 EAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666654 34444555555555 35667777777777777776666665544
No 5
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.54 E-value=1.7e+02 Score=25.26 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=40.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 427 SAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSR 489 (534)
Q Consensus 427 aAWEeAEkAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~ 489 (534)
.-|+ .|..++..++.+ |..++..||.+..+|+.+||-.=+.+++.-.+-++.++
T Consensus 22 ~~~~-~e~~~L~~~l~e--------E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 22 SDRD-DEVKRLREDIAK--------ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHH-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhh-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343 344555555554 45678999999999999999999999998766666553
No 6
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=40.40 E-value=1.2e+02 Score=27.03 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009448 454 RQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEY 516 (534)
Q Consensus 454 ~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~k 516 (534)
.++++.+++++.++.+|+..+....=+-.|+.+.+...-..||.+...--.+=...+.++...
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~r 69 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRL 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999999888888888888888888889888776655555555555543
No 7
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.29 E-value=1.8e+02 Score=29.76 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=30.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 434 KSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAA 499 (534)
Q Consensus 434 kAK~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~A 499 (534)
..+...+|+.+.++.+. .+.++++.++++..+.++.+. -.++++..|..+...-+++++..
T Consensus 412 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQS----VQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhhcchhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHH
Confidence 34555556555555443 333355555555554444444 33444455555555555555443
No 8
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=32.90 E-value=49 Score=22.93 Aligned_cols=22 Identities=36% Similarity=0.755 Sum_probs=13.0
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHH
Q 009448 450 AWESRQK--AKLEAEMRRIEAEVE 471 (534)
Q Consensus 450 AWEN~QK--AKAEA~mrKiE~KLE 471 (534)
.||.+.| |..|.+++-+|.|||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666554 345666666666665
No 9
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.21 E-value=2.9e+02 Score=24.06 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 009448 449 QAWESRQKAKLEAE-----MRRIEAEVEQIRAQA------QAKMVKKISMSRQRSEEKR 496 (534)
Q Consensus 449 ~AWEN~QKAKAEA~-----mrKiE~KLEKkRA~a------~EKm~NKlA~a~rkAEEkR 496 (534)
+||+.+..+.|+|. +..|-.-|+++++.. ++++..+|....++-++++
T Consensus 29 ~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 29 RTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777665 344555666666554 5666777777777666665
No 10
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=26.55 E-value=2.2e+02 Score=24.81 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009448 463 MRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQG 514 (534)
Q Consensus 463 mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA 514 (534)
+-+.-.++|.+|. +.|.++.||+.|+ ++|++..+-|.+...|....|
T Consensus 50 Ll~~i~~~ee~R~-~yE~LQDkL~qi~----eAR~ALdaLR~eH~~Klrr~a 96 (98)
T 3f1i_H 50 LLELLNQLDERRL-YYEGLQDKLAQIR----DARGALSALREEHREKLRRAA 96 (98)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 3344445565554 4578999998875 788888888888877776655
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.38 E-value=5.6e+02 Score=33.88 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009448 436 KHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARK 503 (534)
Q Consensus 436 K~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r 503 (534)
.-..||+.=..||..= +.|.++.+.++..++.+|+++...+ ++++.+|..-+..|+++++.+++.+
T Consensus 1917 ~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea-~~~l~~i~~~~~~ae~~k~~v~~~~ 1982 (3245)
T 3vkg_A 1917 EEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQA-NQKLKQMVQDQQAAEIKQKDARELQ 1982 (3245)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555444454432 3455566666666777777765544 5567777777788888876665443
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.78 E-value=6.6e+02 Score=25.35 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=11.9
Q ss_pred CCCCCCchhHHHhhhh
Q 009448 165 RPMPSKWNDAEKWIMN 180 (534)
Q Consensus 165 rp~PSKWdDAeKWI~~ 180 (534)
...|.-|||=..+..-
T Consensus 137 ~~~P~Twdel~~~a~~ 152 (471)
T 3mq9_A 137 PNPPKTWEEIPALDKE 152 (471)
T ss_dssp SSCCSBGGGHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3578999998876554
Done!