Query 009448
Match_columns 534
No_of_seqs 149 out of 233
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 05:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009448.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009448hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d4ca1 a.238.1.1 (A:11-247) E 19.8 2.2E+02 0.016 23.3 9.3 49 437-485 151-199 (237)
2 d1eh1a_ d.67.3.1 (A:) Ribosome 7.1 6.2E+02 0.045 21.2 8.2 52 428-480 118-171 (185)
3 d1gpja1 a.151.1.1 (A:303-404) 5.9 5.2E+02 0.038 19.2 6.0 47 438-486 6-52 (102)
4 d2clyb1 f.53.1.1 (B:4-123) ATP 4.9 2.6E+02 0.019 22.5 3.6 18 457-474 102-119 (120)
5 d2azea1 e.63.1.1 (A:199-346) T 4.7 8.2E+02 0.06 20.3 6.9 31 458-488 6-36 (148)
6 d1t92a_ d.24.1.3 (A:) Pullulan 4.5 4E+02 0.029 20.7 4.5 23 454-476 6-28 (108)
7 d3b8ma1 d.58.60.1 (A:64-330) E 3.8 1E+03 0.076 20.3 7.4 15 465-479 154-168 (267)
8 d1gs9a_ a.24.1.1 (A:) Apolipop 3.5 6.5E+02 0.048 19.6 5.1 58 456-513 80-137 (144)
9 d2ayua1 d.305.1.1 (A:70-370) N 3.5 1.2E+03 0.088 20.6 7.6 46 472-517 24-69 (301)
10 d1ugoa_ a.7.7.1 (A:) BAG-famil 3.2 7.7E+02 0.056 18.9 5.1 73 454-526 18-98 (99)
No 1
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.80 E-value=2.2e+02 Score=23.29 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 437 HIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKI 485 (534)
Q Consensus 437 ~~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKl 485 (534)
....|........++.+.....++.+++..+.++|..+..+...|.+=+
T Consensus 151 ~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l~ 199 (237)
T d2d4ca1 151 HLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLL 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666788899999999999998888887643
No 2
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=7.05 E-value=6.2e+02 Score=21.17 Aligned_cols=52 Identities=29% Similarity=0.293 Sum_probs=31.9
Q ss_pred hHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 428 AWAEAEKSKHIARFKREEI--KIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAK 480 (534)
Q Consensus 428 AWEeAEkAK~~~RyqREEa--KI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EK 480 (534)
+++..|.+|..-|--|.++ +|..+++.+ .--|-..+++|.++++.=-.+..+
T Consensus 118 ~k~~~E~akv~iR~iR~~~~~~ikk~~k~~-~iseD~~k~~~~eiq~ltd~~~~~ 171 (185)
T d1eh1a_ 118 VRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKITDEFIAK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888999888877754 565554322 124566667766666554444333
No 3
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=5.93 E-value=5.2e+02 Score=19.21 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 438 IARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKIS 486 (534)
Q Consensus 438 ~~RyqREEaKI~AWEN~QKAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA 486 (534)
..=...+-.....|-+ .-++.--|+.+-.++|..|..-++|..++|.
T Consensus 6 E~II~ee~~~F~~w~~--~~~~~p~I~~lr~~~e~ir~~Elekal~kl~ 52 (102)
T d1gpja1 6 EKLIEEELSTVEEELE--KLKERRLVADVAKSLHEIKDRELERALRRLK 52 (102)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345566667777744 4456677888888888888888888887775
No 4
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.92 E-value=2.6e+02 Score=22.53 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009448 457 AKLEAEMRRIEAEVEQIR 474 (534)
Q Consensus 457 AKAEA~mrKiE~KLEKkR 474 (534)
...++.|..+|.+||+++
T Consensus 102 ~~s~~rI~~lekeLe~ik 119 (120)
T d2clyb1 102 TQSKTRIQEYEKELEKMR 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344555677777777765
No 5
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.68 E-value=8.2e+02 Score=20.32 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009448 458 KLEAEMRRIEAEVEQIRAQAQAKMVKKISMS 488 (534)
Q Consensus 458 KAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a 488 (534)
+.|++.+++...+++|++.+.|=++..++.-
T Consensus 6 ~Le~E~~~~~erI~~K~~~LqeLi~Q~iafk 36 (148)
T d2azea1 6 NLEVERQRRLERIKQKQSQLQELILQQIAFK 36 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777666666543
No 6
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG {Klebsiella pneumoniae [TaxId: 573]}
Probab=4.51 E-value=4e+02 Score=20.67 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009448 454 RQKAKLEAEMRRIEAEVEQIRAQ 476 (534)
Q Consensus 454 ~QKAKAEA~mrKiE~KLEKkRA~ 476 (534)
-+.++|.++|+.|+.-||.-+..
T Consensus 6 Ak~~~a~~di~~i~~aL~~Y~~d 28 (108)
T d1t92a_ 6 ADRQKVVSDLVALEGALDMYKLD 28 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888899998888766543
No 7
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=3.83 E-value=1e+03 Score=20.33 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 009448 465 RIEAEVEQIRAQAQA 479 (534)
Q Consensus 465 KiE~KLEKkRA~a~E 479 (534)
-++.++...+..+..
T Consensus 154 ~l~~~~~~~~~~ak~ 168 (267)
T d3b8ma1 154 FEKEKLAQDRIKMKN 168 (267)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 8
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=3.54 E-value=6.5e+02 Score=19.56 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009448 456 KAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 513 (534)
Q Consensus 456 KAKAEA~mrKiE~KLEKkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~Ek 513 (534)
+.+++..|..+..+|+.......+++...+...+.+....-.....+....+.....+
T Consensus 80 r~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~k 137 (144)
T d1gs9a_ 80 QARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKR 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 9
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.49 E-value=1.2e+03 Score=20.58 Aligned_cols=46 Identities=7% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009448 472 QIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYI 517 (534)
Q Consensus 472 KkRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~ki 517 (534)
+.|..++.+++.+...++.+.++.....|.+-...-.-.-++=..|
T Consensus 24 ~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~I 69 (301)
T d2ayua1 24 KEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRI 69 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
No 10
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.24 E-value=7.7e+02 Score=18.86 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCC
Q 009448 454 RQKAKLEAEMRRIEAEVEQ--------IRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPS 525 (534)
Q Consensus 454 ~QKAKAEA~mrKiE~KLEK--------kRA~a~EKm~NKlA~a~rkAEEkRA~AEA~r~ee~~Ka~EkA~kiR~TGk~Ps 525 (534)
.+-.++..++.+|+.+++. ....+.|-|++.|-.+.-+--+-...+...|...+.++..--+++=....-|+
T Consensus 18 ~~I~~i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~l~~LD~ka~~ps 97 (99)
T d1ugoa_ 18 SRLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNASGPS 97 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q ss_pred C
Q 009448 526 S 526 (534)
Q Consensus 526 s 526 (534)
+
T Consensus 98 s 98 (99)
T d1ugoa_ 98 S 98 (99)
T ss_dssp C
T ss_pred C
Done!