BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009449
(534 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 311/559 (55%), Positives = 397/559 (71%), Gaps = 27/559 (4%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MGMGFRLNLKW P+ T S RL ++SV+G+E SF+S R SF S SED S ++D
Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKSTSC---------------IGQD--------- 96
P K + CS QT ENDYS E ++ K C IG+D
Sbjct: 61 PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120
Query: 97 ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
AS S F LL+ENLD+LE FADS+ +RLER+I+ QLG+LGALKLF LSR +KTS
Sbjct: 121 ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180
Query: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213
DL TE E + N + D H+ K++V S +K +RK K R E++ LPS+ +
Sbjct: 181 DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI 240
Query: 214 QEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
++G +P++ + +R LNSR +RL A+NEAEMSKGV++VANLERI+ TLE+E G ASL+
Sbjct: 241 RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS 300
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+AAGV ++VL+Q L FGWYCR+EL++ST LVL++ARNYRG+G+ F D+LQAGN+GV
Sbjct: 301 NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGV 360
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
LQGAERFDHT+GY+FSTYVQYWIRKS+S +VARHARG+KIP LNR I +IQKARKAL
Sbjct: 361 LQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYK 420
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453
SHG+YP+D EIAK+TGLSLA+IRSA CLR+VGS DQ DC A LEF PD S+KSP+
Sbjct: 421 SHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPE 480
Query: 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513
E M+Q +KD+ +L+ LD RERQ+LVLRYG + + KSLEEIG+ F+VSKEWIRKLEK
Sbjct: 481 EGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEK 540
Query: 514 KAMTKLRDSETCRDLSHFL 532
A+ LRD E C++L H++
Sbjct: 541 TALANLRDEEICQNLRHYV 559
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 319/559 (57%), Positives = 418/559 (74%), Gaps = 28/559 (5%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTS-VRGREGSFNSARLSFLSTISEDSASYFQ 59
MG GFRLNLK P S + S+S VRGRE + +RLSFLS ISE+ +
Sbjct: 1 MGFGFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHR 60
Query: 60 DPVKAYTCSFVNTQTVENDYSETE--------------------EIRQKSTSCIGQDASS 99
DP+K Y S+ QTVEN++S+ E E+ K + ++
Sbjct: 61 DPLKTYAYSYA-VQTVENEHSQGEGFKVNFGKRSHFGLNIIGDAEVSLKEDIFVSPSSTK 119
Query: 100 R--SDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLD 157
S F LL+ENL++LE +FADSDA +LE +IL QLGKLGALKLFN+ L+R ++T+NVL+
Sbjct: 120 ERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLE 179
Query: 158 LSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVS-EESIETSLLSLPSEAL 213
+SDVHTE E +N + + K++V + +K +RK + R S + ++ L LPS +
Sbjct: 180 VSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPI 239
Query: 214 QEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
Q G ++PT+ S ++A S+ RRL IARNEAEM++G++V+A+LE+I+TTLE+E+ + SL+
Sbjct: 240 QSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLS 299
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
CWA+AAG+ +VL+Q L+FGWYCR+ELIKSTR LVL+ ARNYRG GI DLLQAGN+GV
Sbjct: 300 CWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGV 359
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
L+GAERFDHTRGY+FSTYVQYWIRKS+SK+V+R ARGI+IPC L+R I +IQKARKALT
Sbjct: 360 LEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTT 419
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453
S+GKYP+D EIAKYTGLSLA+I SAS CLR+VGSIDQKIG+ LNAKYLEF PD SV+SP+
Sbjct: 420 SNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPE 479
Query: 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513
E+VMRQHM +D+ +L SLDSRERQVL+LR+GLND++PKSLEEIG+ FHVSKEW+R+LEK
Sbjct: 480 EVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEK 539
Query: 514 KAMTKLRDSETCRDLSHFL 532
+ MT+LR+ ETCR+L H++
Sbjct: 540 RVMTRLRNEETCRNLRHYI 558
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 293/528 (55%), Positives = 377/528 (71%), Gaps = 27/528 (5%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTS 91
++G+E SF+S R SF S SED S ++DP K + CS QT ENDYS E ++ K
Sbjct: 82 IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141
Query: 92 C---------------IGQD---------ASSRSDFRLLMENLDVLESTFADSDALRLER 127
C IG+D AS S F LL+ENLD+LE FADS+ +RLER
Sbjct: 142 CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201
Query: 128 EILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTE---EQKMNDSRDYHMGKILVPSK 184
+I+ QLG+LGALKLF LSR +KTS DL TE E + N + D H+ K++V S
Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 261
Query: 185 RKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAE 244
+K +RK K R E++ LPS+ +++G +P++ + +R LNSR +RL A+NEAE
Sbjct: 262 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
MSKGV++VANLERI+ TLE+E G ASL+ WA+AAGV ++VL+Q L FGWYCR+EL++ST
Sbjct: 322 MSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRST 381
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LVL++ARNYRG+G+ F D+LQAGN+GVLQGAERFDHT+GY+FSTYVQYWIRKS+S +V
Sbjct: 382 HSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLV 441
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
ARHARG+KIP LNR I +IQKARKAL SHG+YP+D EIAK+TGLSLA+IRSA CLR+
Sbjct: 442 ARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRV 501
Query: 425 VGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRY 484
VGS DQ DC A LEF PD S+KSP+E M+Q +KD+ +L+ LD RERQ+LVLRY
Sbjct: 502 VGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRY 561
Query: 485 GLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
G + + KSLEEIG+ F+VSKEWIRKLEK A+ LRD E C++L H++
Sbjct: 562 GFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 609
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 300/562 (53%), Positives = 397/562 (70%), Gaps = 31/562 (5%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MG+GFRL KW SP+QSH T S+ SS S RG E S N ARLSFLS +SE+ +
Sbjct: 1 MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKS--------TSCIGQDASS------------- 99
K++ CS Q VEND + E ++ + +G D S
Sbjct: 61 SFKSFACSSA-AQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLR 119
Query: 100 ---RSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
S L++NLD LE AD DAL+LER+IL QLG+LGAL+ FN+ LSR ++TSNVL
Sbjct: 120 ERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVL 179
Query: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARV-SEESIETSLLSLPSEA 212
DLS V TE E K + GK +V + +K +RK + R S+ +T+ LSLPS+
Sbjct: 180 DLSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKT 239
Query: 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272
+Q L +PT +R +S RR IARNEA+M++GV+V ++LERI+TTLE+E+G+ SL
Sbjct: 240 VQNNLPKPTF--VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSL 297
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+CWA+A G+ ++VL+Q L FGWYCR+ELIK+T LVL++ARNYRG+GI DL+QAGN+G
Sbjct: 298 SCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLG 357
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+LQGAERFD TRGY+FSTYVQYWIRKS+ K+V RHARGI+IP L+R I+KIQKARKAL+
Sbjct: 358 LLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALS 417
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
NSHG+YP+D E+AK+TGLSLA+I SA +CLR+V S+DQKIG+ AKY EF PD S+++P
Sbjct: 418 NSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNP 477
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
+E VMRQHM+++++ +L LDSRE+QV+VLRYG D++PKSL EIG+LF VSKE +RK+E
Sbjct: 478 EEAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIE 537
Query: 513 KKAMTKLRDSETCRDLSHFLVL 534
KK M KLRD R+LS +++L
Sbjct: 538 KKIMIKLRDEGIRRNLSRYMIL 559
>gi|39840783|emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 277/553 (50%), Positives = 382/553 (69%), Gaps = 24/553 (4%)
Query: 1 MGMGFRLNL-KWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQ 59
MG G +LN+ + V P FTT+S STS RG+E F SARLS L+ ++S + +
Sbjct: 1 MGFGCKLNMMRCVLPSLRSPFTTNSSPPCSTSFRGKELDFGSARLSLLTIGFDESETLRK 60
Query: 60 DPVKAYTCSFVNTQTVENDYSETEE-IRQKSTSCIGQDASSRSD---------------- 102
D ++ + S TVENDYS E I ++S + D SD
Sbjct: 61 DTLRPHAGSSSVPLTVENDYSNLETTISKRSCKDLISDTEVLSDRDVSVYVRSVQSCSAS 120
Query: 103 -FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV 161
F LM N+++LE+ +DS+ L+LE++IL QLG+LGAL+LF++ LSRI+ S DL +
Sbjct: 121 HFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGALQLFHACLSRIIDMS---DLPGL 177
Query: 162 HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPT 221
TE+ K N +D + K LV SKRK +RKL+ R + S + + SE+ E
Sbjct: 178 ITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRLQAST-SKRCACKSESSIESSIHHV 236
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV 281
+ +A + +RGRR IA+NEAEMS+G++VVA LE++K TLEKE+GKA SLNCWA+AAG+
Sbjct: 237 VSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGI 296
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
E+VL+ L FGWYCR+EL+KS R LVL+L+R YRGLG+ DL+QAGN+G+LQGAERFD
Sbjct: 297 DEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFD 356
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
HTRGY+FSTYVQYWIRK++S++V+RH RGIK+P L+ I+++QKARK L S GK+P+D
Sbjct: 357 HTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDD 416
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHM 461
+E++K TGLSL +I+SA CLRIVGS+DQK+G +N KYLE PD +++ P++ VM+QHM
Sbjct: 417 VEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHM 476
Query: 462 KKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521
+ DV ++L+ LD +ER+VL+ RYGL H SL E+GK+F VSKEWIRK+EK+A+TKLR
Sbjct: 477 RNDVHKLLQELDPKERRVLIHRYGLEGH-CMSLHEVGKVFDVSKEWIRKMEKRALTKLRT 535
Query: 522 SETCRDLSHFLVL 534
+ +L H+L L
Sbjct: 536 EQNQTNLKHYLNL 548
>gi|449461399|ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 283/564 (50%), Positives = 380/564 (67%), Gaps = 38/564 (6%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MG FR NL+W +Q+H S +LS + +GRE +FNS RLSF S+I E+ S ++
Sbjct: 1 MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRE 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKS------------------------TSCIGQD 96
+K YTC QT ND EEI S +SC
Sbjct: 61 TLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLP 120
Query: 97 ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
S F +LMENLDVLE TF +S L LER+I+ QL KLGAL+ FN+ LSR +KTS+
Sbjct: 121 TGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFH 180
Query: 157 DLSDV-------HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKT-ARVSEESIETSLLSL 208
D S + H QK ND D + +K+ G+R +K A + + I + LL+
Sbjct: 181 DSSGLPIEGGEDHNVNQKTNDQND---NVTVYSAKKAGRRSVKKRAMDNADKIASRLLT- 236
Query: 209 PSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGK 268
+ A++E + + T+FS +++ NS RRL +A NEAEMS GV+VVANLERI+ TLEKESG+
Sbjct: 237 -TRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGR 295
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
AS++CWA+AA V + L++ L FG +CR+EL++ST LV+FLA+ YR G+P DL+QA
Sbjct: 296 IASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQA 355
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
G +GVLQG ERFD RG++ STY+QYWIRKS+S++VAR++RGI+IP L + I++IQKAR
Sbjct: 356 GALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKAR 415
Query: 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRS 448
K L +S +Y +D +IA+ TGL LA++R AS CL++VGS DQK+GD +N KY+EF D S
Sbjct: 416 KVLNHSGRRYSDD-DIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMS 474
Query: 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWI 508
++SP+E V R+ MKKD+F IL+ L+SRERQVLVLRYGL D PKSLEEIGKL H+SKEW+
Sbjct: 475 IQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWV 534
Query: 509 RKLEKKAMTKLRDSETCRDLSHFL 532
RK+EKKAMTKL++ ET + LSH+L
Sbjct: 535 RKIEKKAMTKLKNEETVKHLSHYL 558
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 280/562 (49%), Positives = 386/562 (68%), Gaps = 41/562 (7%)
Query: 1 MGMGFRLN--LKWVSPVQS-HFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASY 57
+G GF LN L++ + + H FT S LS +S RE FN RLSF ST E+ +
Sbjct: 3 LGFGFGLNPRLRYCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTFYEEGEAL 62
Query: 58 FQDPVKAYTCSFVNTQTVENDYSETEEIR----QKSTSCIGQ----------DASSRSD- 102
+D + + S +T+END EE + ++S S + + + S+ S
Sbjct: 63 QKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPFGEVSTVSKK 122
Query: 103 --------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSN 154
FRLLMENL VLE TF DS+ALRLE+ I+ QLGKLGAL+LFN LSR + TS
Sbjct: 123 FESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSLGTSL 182
Query: 155 VLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSL--LSLPSEA 212
V + +D K++D +D K++V S +K + K + R E + T++ SL +A
Sbjct: 183 VSNYAD------KVDDYKD----KVVVQSSKKKENKTRRKR---EFVSTAVSSQSLTLKA 229
Query: 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272
QE L + +RA N++ +R+ +A+ EAEMSKGV+V+A LE+I+T +E+++ + ASL
Sbjct: 230 NQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASL 289
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+ WA+A+GV E+VL++ L G+YC++ELI+STR LVL+LAR YRG+GI DLLQAG VG
Sbjct: 290 STWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVG 349
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
VLQGAERFD TRGYKFSTYVQYWIRKSI ++VAR+ARGI IP LNR I++IQKARKA+
Sbjct: 350 VLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMK 409
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
++H K P+D EIAK TGLSL +I+SAS CLRIV SIDQK+GD L +Y+E PD +++SP
Sbjct: 410 STHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELLPDATIESP 469
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
++ VM+QHM+KDV +L+ L+ RER++L LR+GLND++P+SL++IG LF VSKE IRK+E
Sbjct: 470 EDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIE 529
Query: 513 KKAMTKLRDSETCRDLSHFLVL 534
KKA+TKL++ T L ++L L
Sbjct: 530 KKALTKLKNEATISKLHYYLDL 551
>gi|7363220|emb|CAB83107.1| sigma factor 3 [Sinapis alba]
Length = 567
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 255/504 (50%), Positives = 349/504 (69%), Gaps = 26/504 (5%)
Query: 41 SARLSFLSTISEDSASYFQD-PVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASS 99
++R SFLS+I E S S+ +D P+KA C+ + T EN Y E ++ ++ C+ D S
Sbjct: 76 ASRWSFLSSIKEGSRSHRRDHPLKACGCA---SATAENVYVELKDPKENIGMCLVGDQMS 132
Query: 100 RSD----------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRI 149
++ + LL +NL LE TF D+LR+ER+I+ Q+ KLGA +LFN+ LSR
Sbjct: 133 SAEKAHLSRSMLQYNLLGKNLLALEQTFVALDSLRMERDIMLQMRKLGAAELFNTCLSRS 192
Query: 150 VKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLP 209
+S L D T E + +++ K V S RK ++K +T + S S
Sbjct: 193 RVSSATSCLPDTGTPELVDDTTQEQ---KTFVHSTRKLRKKARTGNGDQGSSTIS----- 244
Query: 210 SEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKA 269
S EG+ P + + R +R I+RNEAEMS+GV++VA++ERI+T LE+E+GK
Sbjct: 245 SRTTWEGIDVPRV---RKPSKYRKKRERISRNEAEMSQGVKIVADMERIRTKLEEETGKV 301
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
AS++CWA+AAG+++++L +L FGWYCR+EL+KSTR LVLFLARNYRGLGI DL+QAG
Sbjct: 302 ASMSCWAEAAGMNQKLLMHNLHFGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAG 361
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
VGVLQGAERFDHTRGYKFSTYV+YWIRKS+S MV+RHARG+ IP + R +S+IQKARK
Sbjct: 362 YVGVLQGAERFDHTRGYKFSTYVRYWIRKSMSTMVSRHARGVHIPASIIRTMSQIQKARK 421
Query: 390 ALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRS 448
L S G KYP D EI+K TG SL +IR+A++CL++VGSID+K+GDC ++LEF PD +
Sbjct: 422 TLKTSQGIKYPADEEISKLTGYSLKKIRAANQCLKVVGSIDKKVGDCFTTRFLEFTPDPT 481
Query: 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWI 508
++SP+E VMRQ + +V +LE L+ RE+QV+VLRYGL D+ PKSLEEIGK+ VSKE I
Sbjct: 482 MESPEEAVMRQSARGEVHNLLEGLEPREKQVMVLRYGLQDYSPKSLEEIGKILRVSKEGI 541
Query: 509 RKLEKKAMTKLRDSETCRDLSHFL 532
RK+E++AM KLRD +L ++L
Sbjct: 542 RKIERRAMAKLRDQPKADNLRYYL 565
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 263/510 (51%), Positives = 355/510 (69%), Gaps = 22/510 (4%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRG+GI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMGIAHE 359
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHARG+ IP + R I+
Sbjct: 360 DLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINH 419
Query: 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
IQKARK L SHG KY D EIAK TG S+ +IR+A++CL++VGSID+K+GDC K+LE
Sbjct: 420 IQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLE 479
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F PD +++SP+E VMRQ ++D+ +LE L+ RE+QV+VLRYGL D+RPKSLEEIGKLF
Sbjct: 480 FTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFK 539
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
VSKEWIRK+E++AM KLRD DL ++L
Sbjct: 540 VSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>gi|297820128|ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 264/525 (50%), Positives = 363/525 (69%), Gaps = 17/525 (3%)
Query: 14 PVQSHFFTTSSCRLSSTS--VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVN 71
P+ H+ + C +S VR SF + R SFLS++ E+S Y +DP+KA C+
Sbjct: 53 PLIKHWLSLLRCDQTSFPIFVRIPVSSFVATRWSFLSSVKEESRIYQKDPLKA--CASSA 110
Query: 72 TQTVENDYSETEEIRQK-STSCIGQDASSRS--DFRLLMENLDVLESTFADSDALRLERE 128
T EN + E ++ ++ + SSRS + LL +NL LE TF D+ R+ER+
Sbjct: 111 PYTAENVFLELKDPKENIGVGSAEKSCSSRSMLQYNLLAKNLLALEETFVALDSARMERD 170
Query: 129 ILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGK 188
I+ Q+GKLGA LF + LSR +S LSD TE ++ ++ V S+RK K
Sbjct: 171 IMLQMGKLGAADLFKTCLSRSRGSSVASCLSDT-TELVGTTPNQ-----QVFVSSRRKLK 224
Query: 189 RKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKG 248
+K + + V+ E+ + L + + P + R R +R I++NEAEMS G
Sbjct: 225 KKARRSTVTAENGDQGSLPMGLRTTWNNIDVPRV---RRPPKYRKKRERISKNEAEMSTG 281
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
V++VA++ERI+T LE+ESGK ASL+CWA+AAG++E++L ++L +GWYCR+EL+KSTR LV
Sbjct: 282 VKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLV 341
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
LFLARNYRGLGI DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHA
Sbjct: 342 LFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHA 401
Query: 369 RGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
RG+ IP + R I++IQKARK L SHG KYP D +I+K T LS+ +IR+A++CL++VGS
Sbjct: 402 RGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGS 461
Query: 428 IDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLN 487
I++K+GDC + K+LEF PD +++SP+E VMRQ ++D+ +LE L+ RE+QV+VLRYGL
Sbjct: 462 IEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQ 521
Query: 488 DHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++RPKSLEEIGKL VSKEWIRK+E++AM KLRD DL ++L
Sbjct: 522 NYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 566
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 263/510 (51%), Positives = 354/510 (69%), Gaps = 22/510 (4%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRGLGI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHE 359
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHARG+ IP + R I+
Sbjct: 360 DLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINH 419
Query: 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
IQKARK L SHG KY D EIAK TG S+ +IR+A++CL++VGSID+K+GDC K+LE
Sbjct: 420 IQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLE 479
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F PD +++SP+E VMRQ ++D+ +LE L+ RE+QV+VLRYGL D+RPKSLEEIGKL
Sbjct: 480 FTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLK 539
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
VSKEWIRK+E++AM KLRD DL ++L
Sbjct: 540 VSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>gi|312281919|dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila]
Length = 562
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 254/485 (52%), Positives = 338/485 (69%), Gaps = 18/485 (3%)
Query: 57 YFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDAS------SRS--DFRLLME 108
Y + P+KA C+ T EN Y E ++ + KS + Q +S SRS + LL +
Sbjct: 85 YQKYPLKACGCASATPCTAENVYVELKDPK-KSIGVVEQMSSAEKANLSRSMLQYNLLGK 143
Query: 109 NLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKM 168
NL LE TF D+LR+ER+I+ Q+GKLGA +LF + LSR +S LSD TE
Sbjct: 144 NLLALEETFVSLDSLRMERDIMLQMGKLGATELFKTCLSRSRGSSVTSCLSDTGTELVVA 203
Query: 169 NDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERA 228
+ + + VPS+RK K+K + + +S + L + S + P + ++
Sbjct: 204 TEEQ-----QTFVPSRRKLKKKARRSSLSTGKGDQGSLLIGSRTTWNDIDAPRL---RKS 255
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
R +R I+RNEAEMS G ++VA++ERI+T LE+ESGK AS++CWA+AAG++E +L +
Sbjct: 256 SKYRKKRERISRNEAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAAGMNEILLMR 315
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
+L +GWYCR+EL+KSTR LVLFL+RNYRGLGI DL+QAGNVGVLQGAERFDHTRGYKF
Sbjct: 316 NLHYGWYCRDELLKSTRSLVLFLSRNYRGLGIAHEDLIQAGNVGVLQGAERFDHTRGYKF 375
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKY 407
STYVQYWIRKS+S MV+RHARG+ IP + R +S+IQKARK L SHG KYP D EI+K
Sbjct: 376 STYVQYWIRKSMSMMVSRHARGVYIPSSVIRTMSQIQKARKTLKTSHGIKYPADEEISKE 435
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
TG SL +IR+A++CL++VGSID+K+GDC K+LEF PD +++SP+E VMRQ +DV
Sbjct: 436 TGYSLKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSAWRDVHD 495
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L+ L+ RE+QV+VLRYGL RPKSLEEIGKL VSKEWIRK+E++AM KLRD +
Sbjct: 496 LLQGLEPREKQVMVLRYGLQGFRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQANAEN 555
Query: 528 LSHFL 532
L +L
Sbjct: 556 LRFYL 560
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 276/558 (49%), Positives = 371/558 (66%), Gaps = 33/558 (5%)
Query: 1 MGM--GFRLNLKW-VSPVQSH----FFTTSSCRLSSTS-VRGREGSFNSARLSFLSTISE 52
MG+ GFRLN K S V H FF+ S LSS+S GRE FN RLS LST+ E
Sbjct: 1 MGLCFGFRLNTKLRYSTVPLHHSSPFFSNSHIFLSSSSSAGGRETLFNPVRLSLLSTVYE 60
Query: 53 DSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQ-----KSTSCIGQ--DAS----SRS 101
+ + +D K + S + E D + E+ + +S S + + D S S
Sbjct: 61 EGETLQKDFRKTFAFSSA-LEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDNSHLPFEES 119
Query: 102 DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV 161
F LLMENL VLE TFADS+ALRLE+ I+ QL KLGAL+LFN L+ TS + + +
Sbjct: 120 HFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCTHK 179
Query: 162 ---HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEG-L 217
EE K N D + GK++V S ++ ++ + + SI S SLP + QE L
Sbjct: 180 VLEQVEENKRNHKVDDYTGKVIVHSSKR--KENRRRKRGSVSIAPSSRSLPLDDNQEDPL 237
Query: 218 KQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQ 277
+ +RA N++ +R IA+ E EMSKGV+V+A LE+I+T +E+++ + SL+ WA+
Sbjct: 238 RSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAE 297
Query: 278 AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
+GV E+VL+Q L G+YCR+ELI+STR LVL+ AR YRG+GI DLLQ G +GVLQGA
Sbjct: 298 TSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGA 357
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
ERFD T+GY+FSTYVQYWIRKS+S+MVA++ARGI +P +N+ IS+IQKARK L N+ K
Sbjct: 358 ERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMK 417
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVM 457
YP D+EIAK TGLSL +I SAS CLR V S+ + I +Y+ PD S++SP+E VM
Sbjct: 418 YPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGI------EYMGHMPDLSIESPEETVM 471
Query: 458 RQHMKKDVFRILESLDSRERQVLVLRYGLN-DHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516
+QH+KKD+ IL+SLDSRERQ+++LR+GLN DH+PKSLE IGK+F VSKEWIRK+EKKA+
Sbjct: 472 KQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKAL 531
Query: 517 TKLRDSETCRDLSHFLVL 534
TKLR+ L+++L L
Sbjct: 532 TKLRNETNISKLNYYLDL 549
>gi|22135904|gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/289 (65%), Positives = 239/289 (82%), Gaps = 1/289 (0%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
MS GV++VA++ERI+T LE+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KST
Sbjct: 1 MSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKST 60
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
R LVLFLARNYRGLGI DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV
Sbjct: 61 RSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMV 120
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLR 423
+RHARG+ IP + R I+ IQKARK L SHG KY D EIAK TG S+ +IR+A++CL+
Sbjct: 121 SRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLK 180
Query: 424 IVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLR 483
+VGSID+K+GDC K+LEF PD +++SP+E VMRQ ++D+ +LE L+ RE+QV+VLR
Sbjct: 181 VVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLR 240
Query: 484 YGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
YGL D+RPKSLEEIGKL VSKEWIRK+E++AM KLRD DL ++L
Sbjct: 241 YGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 289
>gi|218197356|gb|EEC79783.1| hypothetical protein OsI_21197 [Oryza sativa Indica Group]
Length = 557
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 177/445 (39%), Positives = 275/445 (61%), Gaps = 25/445 (5%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 124 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYES 183
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
N++ L ++ EEQ + ++V S + +RKLK + SE+ S +
Sbjct: 184 EFSLPGNIIKLDPEIPLEEQNV---------VVIVRSGKSQERKLKRMKASEKG---SRV 231
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 232 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 289
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 290 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 349
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++
Sbjct: 350 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVRE 409
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPD 446
AR+A+ + G+ P D EIA G+S+A +R A +C R V S+ +IG NAK++E PD
Sbjct: 410 ARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFVEVTPD 469
Query: 447 RSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506
S+++P E + R +++ + +L+ L RE VL LR+GL D + +SLE+IG ++HVSKE
Sbjct: 470 TSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVLKLRHGLEDGKCRSLEQIGSIYHVSKE 529
Query: 507 WIRKLEKKAMTKLRDSETCRDLSHF 531
WIRK+EK AM+KLR+ + +L F
Sbjct: 530 WIRKIEKSAMSKLRNDDVHNELKDF 554
>gi|357128317|ref|XP_003565820.1| PREDICTED: uncharacterized protein LOC100824063 [Brachypodium
distachyon]
Length = 989
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 177/445 (39%), Positives = 277/445 (62%), Gaps = 20/445 (4%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSR--IVKTSNV 155
SS ++ LLM+N+ LES+ A D + LER IL + +LGAL+LFN+ SR + +TS+
Sbjct: 551 SSSLEYSLLMQNIHALESSLAGQDLVLLERNILVHIEQLGALQLFNASRSRAIVTQTSHE 610
Query: 156 LDLS--------DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLS 207
D + D T + +D +++V S + +RKLK R E+ + +
Sbjct: 611 SDFALPGSVAEFDPVTPLGEESD-------RLIVRSGKSQERKLKRIRSLEKVSGVCVKA 663
Query: 208 LPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESG 267
+ + + F AE N GRR +I R ++ + ++ ANLE+I+ + KE G
Sbjct: 664 SSRKQKKSCKSSSSQFIAEWK-NYPGRRRSIVREQSALLMTIKECANLEKIRENMVKE-G 721
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ S + WA+AAGV E VLK L G++CRE L+ +T LV ++AR Y G+G F DLLQ
Sbjct: 722 QEVSYDRWAKAAGVDEAVLKSRLQAGYFCRERLLVTTEWLVKYIARTYTGMGTAFEDLLQ 781
Query: 328 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKA 387
AG +GVL GA+RFD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++A
Sbjct: 782 AGKMGVLNGADRFDSNKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMESIIRKVKEA 841
Query: 388 RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDR 447
++A+ +S G+ P D EIA + G+S++ +R A +C R V S+ +IG NAK++E PD
Sbjct: 842 KRAIRSSTGRNPIDAEIATFVGVSVSNVRLARKCSRRVVSLYMEIGTGQNAKFMEVTPDT 901
Query: 448 SVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEW 507
S+++P E + R+ +++ + +L+ L +RE VL LR+GL D + +SLE+IG ++HVSKEW
Sbjct: 902 SLEAPDEAIFRKQLRERLLLVLDRLPAREGHVLKLRHGLEDGKCRSLEQIGGIYHVSKEW 961
Query: 508 IRKLEKKAMTKLRDSETC-RDLSHF 531
IRK+EK AM++LR+ E DL F
Sbjct: 962 IRKIEKSAMSRLRNEEDVHHDLKDF 986
>gi|49328110|gb|AAT58808.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 799
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 275/445 (61%), Gaps = 25/445 (5%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 366 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 425
Query: 153 -----SNVLDL-SDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 426 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 476
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ ++ + Q F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 477 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 531
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 532 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 591
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++
Sbjct: 592 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVRE 651
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPD 446
AR+A+ + G+ P D EIA G+S+A +R A +C R V S+ +IG NAK++E PD
Sbjct: 652 ARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFVEVTPD 711
Query: 447 RSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506
S+++P E + R +++ + +L+ L RE VL LR+GL D + +SLE+IG ++HVSKE
Sbjct: 712 TSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVLKLRHGLEDGKCRSLEQIGSIYHVSKE 771
Query: 507 WIRKLEKKAMTKLRDSETCRDLSHF 531
WIRK+EK AM+KLR+ + +L F
Sbjct: 772 WIRKIEKSAMSKLRNDDVHNELKDF 796
>gi|47777365|gb|AAT37999.1| putative RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 882
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 275/445 (61%), Gaps = 25/445 (5%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 449 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 508
Query: 153 -----SNVLDL-SDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 509 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 559
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ ++ + Q F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 560 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 614
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 615 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 674
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++
Sbjct: 675 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVRE 734
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPD 446
AR+A+ + G+ P D EIA G+S+A +R A +C R V S+ +IG NAK++E PD
Sbjct: 735 ARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFVEVTPD 794
Query: 447 RSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506
S+++P E + R +++ + +L+ L RE VL LR+GL D + +SLE+IG ++HVSKE
Sbjct: 795 TSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVLKLRHGLEDGKCRSLEQIGSIYHVSKE 854
Query: 507 WIRKLEKKAMTKLRDSETCRDLSHF 531
WIRK+EK AM+KLR+ + +L F
Sbjct: 855 WIRKIEKSAMSKLRNDDVHNELKDF 879
>gi|222632746|gb|EEE64878.1| hypothetical protein OsJ_19735 [Oryza sativa Japonica Group]
Length = 1012
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 181/469 (38%), Positives = 276/469 (58%), Gaps = 49/469 (10%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 555 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 614
Query: 153 -----SNVLDL-SDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 615 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 665
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEM---------SKGVQV------ 251
+ ++ + Q F AE N GRR +I R ++ + GVQ
Sbjct: 666 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKRRSADAGVQWKASAAE 721
Query: 252 ---------VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIK 302
ANLE+I+ L K+ G S WA+AAG+ E +L+ L G+ CRE L+
Sbjct: 722 ERRRASAAECANLEKIRENLLKD-GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLV 780
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+T LV ++A+ Y G+G F DLLQAG +GVL GAE+FD +G KFSTYV+YWIRK++
Sbjct: 781 TTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLA 840
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
++A ++ I++P ++ I K+++AR+A+ + G+ P D EIA G+S+A +R A +C
Sbjct: 841 LLAENSGVIQLPARMEGIIRKVREARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCS 900
Query: 423 RIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVL 482
R V S+ +IG NAK++E PD S+++P E + R +++ + +L+ L RE VL L
Sbjct: 901 RRVVSLYTEIGVGQNAKFVEVTPDTSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVLKL 960
Query: 483 RYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
R+GL D + +SLE+IG ++HVSKEWIRK+EK AM+KLR+ + +L F
Sbjct: 961 RHGLEDGKCRSLEQIGSIYHVSKEWIRKIEKSAMSKLRNDDVHNELKDF 1009
>gi|162463525|ref|NP_001105185.1| sigma factor protein [Zea mays]
gi|20159761|gb|AAM12034.1| sigma factor protein [Zea mays]
Length = 568
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 184/552 (33%), Positives = 294/552 (53%), Gaps = 47/552 (8%)
Query: 12 VSPVQSHFFTTSSCRLSSTSV-----------RGREGSFNSARLSFLSTISEDSASYFQD 60
+ P QSH +SS S+ R R+G+ A S + I+ED +S
Sbjct: 33 LPPKQSHHPLNGGRAISSESLAALAWHFLLRRRSRDGATALASSSGVLQIAEDKSSAAN- 91
Query: 61 PVKAYTCSFVNTQ-TVENDYSETEEIRQKSTSCIGQDASSRSD---------FRLLMENL 110
T V+ + + ND + +R ++ S + ++ SS D +RLLM+NL
Sbjct: 92 ----LTKHKVSAERKLLNDALDRTGVRYETESWMDEETSSWMDRDLTDSDLRYRLLMQNL 147
Query: 111 DVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT------SNVLDLSDVHTE 164
+ LE++ D LE +IL+QLG LG+ FN+ ++R V ++LD D E
Sbjct: 148 EELETSLVGKD---LEMDILEQLGALGS---FNASVARGVSALHGRPDGSLLD--DPEPE 199
Query: 165 EQKMNDSR-DYHMGKILVPSKRKGKRKLKTARVS--EESIETSLLSLPSEALQEGLKQPT 221
++ + D M ++V S + +RKL+ R S E+ TS+ P ++ K +
Sbjct: 200 TTPLDAGQEDSQM--VVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSRKASS 257
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV 281
+ G+R I R ++ + ++ A LE+I+ + KE G+ S + WA+AAGV
Sbjct: 258 SQFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGV 316
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
E L L G+ CR+ L+ +T LV +AR Y G+G DLLQAG +GVL GAE+FD
Sbjct: 317 DEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVLDGAEKFD 376
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+G +FSTYV+YWIRK + ++A ++ +P ++ + K+++AR+ + G+ P D
Sbjct: 377 SRKGCRFSTYVKYWIRKGMLALLAENSGVTLLPARMESIMRKVKEARRGIRYRQGRNPSD 436
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHM 461
E+A G+S+A +R A +C R S+ ++ + K+ E PD S + + R +
Sbjct: 437 SEVAAAVGVSVANVRLARKCSRRAVSLYSEVAIGQDVKFAEVIPDESASPDEAALFRGQL 496
Query: 462 KKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521
++ + +L L +RE +VL LR+GL D R +SLEEIG ++ VSKEWIRK+EK AM +LRD
Sbjct: 497 RERLLLVLGRLPAREGRVLRLRHGLEDGRCRSLEEIGGIYGVSKEWIRKIEKSAMARLRD 556
Query: 522 SETC-RDLSHFL 532
+ RDL F+
Sbjct: 557 DDAVRRDLHDFV 568
>gi|413946740|gb|AFW79389.1| sigma factor protein [Zea mays]
Length = 568
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 182/551 (33%), Positives = 293/551 (53%), Gaps = 45/551 (8%)
Query: 12 VSPVQSHFFTTSSCRLSSTSV-----------RGREGSFNSARLSFLSTISEDSASYFQD 60
+ P QSH +SS S+ R R+G+ A S + I+ED +S
Sbjct: 33 LPPKQSHHPLNGGRAISSESLAALAWHFLLRRRSRDGATALASSSGVLQIAEDKSSAAN- 91
Query: 61 PVKAYTCSFVNTQ-TVENDYSETEEIRQKSTSCIGQDASSRSD---------FRLLMENL 110
T V+ + + ND + +R ++ S + ++ SS D +RLLM+NL
Sbjct: 92 ----LTKHKVSAERKLLNDALDRTGVRYETESWMDEETSSWMDRDLTDSDLRYRLLMQNL 147
Query: 111 DVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT------SNVLDLSDVHTE 164
+ LE++ D LE +IL+QLG LG+ FN+ ++R V ++LD D E
Sbjct: 148 EELETSLVGKD---LEMDILEQLGALGS---FNASVARGVSALHGRPDGSLLD--DPEPE 199
Query: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVS--EESIETSLLSLPSEALQEGLKQPTI 222
++ ++ ++V S + +RKL+ R S E+ TS+ P ++ K +
Sbjct: 200 TTPLDAGQEDSQ-VVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSRKASSS 258
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
+ G+R I R ++ + ++ A LE+I+ + KE G+ S + WA+AAGV
Sbjct: 259 QFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVD 317
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
E L L G+ CR+ L+ +T LV +AR Y G+G DLLQAG +GVL GAE+FD
Sbjct: 318 EAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVLDGAEKFDS 377
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+G +FSTYV+YWIRK + ++A ++ +P ++ + K+++AR+ + G+ P D
Sbjct: 378 RKGCRFSTYVKYWIRKGMLALLAENSGVTLLPARMESIMRKVKEARRGIRYRQGRNPSDS 437
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
E+A G+S+A +R A +C R S+ ++ + K+ E PD S + + R ++
Sbjct: 438 EVAAAVGVSVANVRLARKCSRRAVSLYSEVAIGQDVKFAEVIPDESASPDEAALFRGQLR 497
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+ + +L L +RE +VL LR+GL D R +SLEEIG ++ VSKEWIRK+EK AM +LRD
Sbjct: 498 ERLLLVLGRLPAREGRVLRLRHGLEDGRCRSLEEIGGIYGVSKEWIRKIEKSAMARLRDD 557
Query: 523 ETC-RDLSHFL 532
+ RDL F+
Sbjct: 558 DAVRRDLHDFV 568
>gi|223975681|gb|ACN32028.1| unknown [Zea mays]
gi|413946741|gb|AFW79390.1| hypothetical protein ZEAMMB73_416951 [Zea mays]
Length = 565
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 175/521 (33%), Positives = 284/521 (54%), Gaps = 38/521 (7%)
Query: 33 RGREGSFNSARLSFLSTISED---SASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKS 89
R R+G+ A S + I+ED +A+ + V A + + ND + +R ++
Sbjct: 62 RSRDGATALASSSGVLQIAEDKSSAANLTKHKVSA-------ERKLLNDALDRTGVRYET 114
Query: 90 TSCIGQDASSRSD---------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALK 140
S + ++ SS D +RLLM+NL+ LE++ D LE +IL+QLG LG+
Sbjct: 115 ESWMDEETSSWMDRDLTDSDLRYRLLMQNLEELETSLVGKD---LEMDILEQLGALGS-- 169
Query: 141 LFNSHLSRIVKT------SNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTA 194
FN+ ++R V ++LD D E ++ ++ ++V S + +RKL+
Sbjct: 170 -FNASVARGVSALHGRPDGSLLD--DPEPETTPLDAGQEDSQ-VVVVRSGKSQERKLRRM 225
Query: 195 RVS--EESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVV 252
R S E+ TS+ P ++ K + + G+R I R ++ + ++
Sbjct: 226 RASSDEKGSRTSVKVNPPRRPKKSRKASSSQFISEWKSHPGQRRIIVREQSALLSTIKEC 285
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
A LE+I+ + KE G+ S + WA+AAGV E L L G+ CR+ L+ +T LV +A
Sbjct: 286 AGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIA 344
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
R Y G+G DLLQAG +GVL GAE+FD +G +FSTYV+YWIRK + ++A ++
Sbjct: 345 RTYTGMGTALDDLLQAGKMGVLDGAEKFDSRKGCRFSTYVKYWIRKGMLALLAENSGVTL 404
Query: 373 IPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKI 432
+P ++ + K+++AR+ + G+ P D E+A G+S+A +R A +C R S+ ++
Sbjct: 405 LPARMESIMRKVKEARRGIRYRQGRNPSDSEVAAAVGVSVANVRLARKCSRRAVSLYSEV 464
Query: 433 GDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPK 492
+ K+ E PD S + + R +++ + +L L +RE +VL LR+GL D R +
Sbjct: 465 AIGQDVKFAEVIPDESASPDEAALFRGQLRERLLLVLGRLPAREGRVLRLRHGLEDGRCR 524
Query: 493 SLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC-RDLSHFL 532
SLEEIG ++ VSKEWIRK+EK AM +LRD + RDL F+
Sbjct: 525 SLEEIGGIYGVSKEWIRKIEKSAMARLRDDDAVRRDLHDFV 565
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 193/286 (67%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L AR E ++S +Q + LE IK+ LE+E G+ A++ W++A G+ + + L G
Sbjct: 275 KLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLKKGR 334
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +++++ S LV+ +A+NY+G G+ DL+Q G++G+++GAE+FD T+G+KFSTY +
Sbjct: 335 FAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPTKGFKFSTYAHW 394
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+++++ +A +R I++P L IS+I KA++ L HG+ + E+A+ GL++ +
Sbjct: 395 WIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVGLTVEK 454
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
++S + + GS+++ IG + E D V SP++ +++Q M++D+ +L +L+
Sbjct: 455 LKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGVLRTLNP 514
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER+VL LR+GL+D R K+LEEIG++F V++E IR++E KAM KLR
Sbjct: 515 REREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLR 560
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 194/298 (65%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + L+RI+ ++++GK +L WA+ GV ++ LK L G
Sbjct: 196 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 255
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++I LV+ +A+NY+ G+ DL+QAG++G+++ AE+FD++RG+KFSTY +
Sbjct: 256 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 315
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+SI+K + +R I++P + +++I+ A + L H + P E+A+ G+S+
Sbjct: 316 WIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTR 375
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + C R+ S+D+ +G ++ K+ E D + +S + IV ++ KKD+ R+L++L +
Sbjct: 376 LRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTA 435
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE+QV+ LRYGL+D R KSL E+G+ F +S+E +R++E KAM KLR + + L H+L
Sbjct: 436 REKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 493
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 194/298 (65%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + L+RI+ ++++GK +L WA+ GV ++ LK L G
Sbjct: 293 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 352
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++I LV+ +A+NY+ G+ DL+QAG++G+++ AE+FD++RG+KFSTY +
Sbjct: 353 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 412
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+SI+K + +R I++P + +++I+ A + L H + P E+A+ G+S+
Sbjct: 413 WIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTR 472
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + C R+ S+D+ +G ++ K+ E D + +S + IV ++ KKD+ R+L++L +
Sbjct: 473 LRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTA 532
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE+QV+ LRYGL+D R KSL E+G+ F +S+E +R++E KAM KLR + + L H+L
Sbjct: 533 REKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 229/364 (62%), Gaps = 13/364 (3%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLPS--------EALQE-GLKQPTIFSAERAL 229
I V SKR+ +RK + R +E+++ TS+LS S ++QE P + RA
Sbjct: 220 ITVKSKRQTERKARRTRAAEKTV-TSVLSFKSGSSSRKKRNSVQEVDYSDPLRYL--RAT 276
Query: 230 NSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQH 289
+ R LT A E E+S+G+Q + LER++ L + G + WA AAGV++R L++
Sbjct: 277 TNTSRLLT-ATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKR 335
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
L +G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFS
Sbjct: 336 LNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 395
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WI++++ K ++ +R I++P + ++++ARK L + +G++P+D EIA+ G
Sbjct: 396 TYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAG 455
Query: 410 LSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL 469
LS+ + + + S++QKIG N K E D ++ ++++++Q MK+D+ ++L
Sbjct: 456 LSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVL 515
Query: 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLS 529
+SL+ RE+QV+ R+G+ D R K+L+EIG++ VS+E IR++E A KL++ + + L
Sbjct: 516 DSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQ 575
Query: 530 HFLV 533
+++
Sbjct: 576 QYVM 579
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 198/305 (64%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
+ + +L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q
Sbjct: 265 MTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQ 324
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
+ G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KF
Sbjct: 325 RIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKF 384
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ T
Sbjct: 385 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEAT 444
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
GLS+ + + + S+DQKIG N K E D +P++I++++ M++D+ ++
Sbjct: 445 GLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKV 504
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L+SL +RE+QV+ R+G+ D R K+L+EIG++ VS+E +R++E A KL++ + L
Sbjct: 505 LDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHL 564
Query: 529 SHFLV 533
+LV
Sbjct: 565 QQYLV 569
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 197/305 (64%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
+ + +L AR E ++S+G+Q + LER++ L + G + + WA AAGV ++ L++
Sbjct: 265 MTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRK 324
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
+ G C++ +IKS LV+ +A+NY+G G+ F DL+Q G G+++GAE+FD T+G+KF
Sbjct: 325 RITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKF 384
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WI++++ K ++ +R I++P + ++++ARK L + GK P++ E+A+ T
Sbjct: 385 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEAT 444
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
GLS+ + + + S+DQKIG LN K E D ++ ++I+M+Q M++D+ ++
Sbjct: 445 GLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKV 504
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L+SL +RE+QV+ R+G+ D R K+L+EIG+ VS+E +R+++ A KL++ + L
Sbjct: 505 LDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKLKNKKRNSHL 564
Query: 529 SHFLV 533
+LV
Sbjct: 565 QQYLV 569
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 188/300 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L + E E+++G+Q + +E +K L ++ G+ +L WA+A G L+ + G
Sbjct: 316 KLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESRIKSGQ 375
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++ ++ S LV+ +A+ Y+G G+ DL+Q G++G+++GAE+FDHTRG+KFSTY +
Sbjct: 376 ACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFSTYAHW 435
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P + +S+I KA+ L HG+ P D E+A+ GLS+ +
Sbjct: 436 WIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPRDEEVAELVGLSIEK 495
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
++ + R S++ +G + E PD+ + SP+E + ++ +K+D+ +L +L
Sbjct: 496 LKMVIKSARSPKSMEFPVGKNNDTTLGEVIPDKDIDSPEEAISKRLLKQDLDVVLHTLSP 555
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
RER VL LRYGL+D R ++LEEIG +F V++E IR++E KA+ KLR L +L L
Sbjct: 556 RERDVLRLRYGLDDGRMRTLEEIGNVFKVTRERIRQIEAKALRKLRQPSRNTALREYLDL 615
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 195/300 (65%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL + E E+S G+Q + LE++ L+ GK+ S WA AAG+ +R L++ L G
Sbjct: 276 RLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGT 335
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 336 FCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 395
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + +GK P + E+A+ TGLS+
Sbjct: 396 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKR 455
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + + S+DQKIG +N K E D ++ ++++ +Q M++D+ ++L++L S
Sbjct: 456 LTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSS 515
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
RE+QV+ R+GL D R K+L+EIG+L VS+E IR++E A KL++ + +L ++ L
Sbjct: 516 REKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYMFL 575
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 197/305 (64%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
+ + +L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q
Sbjct: 265 MTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQ 324
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
+ G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KF
Sbjct: 325 RIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKF 384
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ T
Sbjct: 385 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEAT 444
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
GLS+ + + + S+DQKIG N K E D + ++I++++ M++D+ ++
Sbjct: 445 GLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKV 504
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L+SL +RE+QV+ R+G+ D R K+L+EIG++ VS+E +R++E A KL++ + L
Sbjct: 505 LDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHL 564
Query: 529 SHFLV 533
+LV
Sbjct: 565 QQYLV 569
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 194/299 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LE+++ LE+ G + WA AAGV ++ L++ +G
Sbjct: 276 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI 335
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 336 RCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 395
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + +G++P + E+A+ TGLS+
Sbjct: 396 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 455
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + + S+DQKIG N K E D ++ +E++++Q M++D+ ++L SL+
Sbjct: 456 LNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNP 515
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
RE+QV+ RYGL D R K+L+EIG+L VS+E IR++E A KL++ + L +LV
Sbjct: 516 REKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLV 574
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 194/299 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LE+++ LE+ G + WA AAGV ++ L++ +G
Sbjct: 279 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI 338
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 339 RCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 398
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + +G++P + E+A+ TGLS+
Sbjct: 399 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 458
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + + S+DQKIG N K E D ++ +E++++Q M++D+ ++L SL+
Sbjct: 459 LNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNP 518
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
RE+QV+ RYGL D R K+L+EIG+L VS+E IR++E A KL++ + L +LV
Sbjct: 519 REKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLV 577
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 219/361 (60%), Gaps = 7/361 (1%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQE--GLKQPTIFSAE----RALNSR 232
I V S+R+ +RK + AR E++ + + P ++ G Q +S R S
Sbjct: 209 IAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTST 268
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R LT A E E+S +Q + LER++ L + G + WA AAGV +R L++ +
Sbjct: 269 SRLLT-ASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINH 327
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY
Sbjct: 328 GTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 387
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K ++ +R I++P + ++++ARK L + +G++P+D E+A+ GLS+
Sbjct: 388 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSM 447
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ + + S+DQKIG ++ K E D ++ +E++M+Q MK+D+ ++L +L
Sbjct: 448 KRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTL 507
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ RE QV+ R+GL D R K+L+EIG++ VS+E IR++E A KL++ + + L +L
Sbjct: 508 NPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYL 567
Query: 533 V 533
+
Sbjct: 568 L 568
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 227/387 (58%), Gaps = 18/387 (4%)
Query: 157 DLSDVHTE----EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIE--TSLLSLPS 210
DL H E +++++DS I V S+R+ +RK K R +E++ TS S
Sbjct: 179 DLEPSHEELERLQEQLSDS-------IAVRSRRQTERKAKRVRATEKATTNFTSFKPGSS 231
Query: 211 EALQEGLKQPTIFSAE----RALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ Q +S R S R LT E ++S G+Q + LE+I+ L +
Sbjct: 232 SRRKRVSMQEVDYSDPLRYLRTTTSASRLLT-PTEEIKLSAGIQDLLKLEKIQEDLAERF 290
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G + WA AGV ++ L++ L +G +C++++IKS LV+ +A+NY+G G+ DL+
Sbjct: 291 GSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLV 350
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
Q G G+++GAE+FD T+G+KFSTY +WI++++ K ++ +R I++P + ++++
Sbjct: 351 QEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 410
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPD 446
ARK L + +G+ P+D E+A+ TGLS+ + + + S++QKIG N K E D
Sbjct: 411 ARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISD 470
Query: 447 RSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506
++ +E +++Q MKKD+ L+SL+ RERQV+ R+G++D R K+L+EIG++ VS+E
Sbjct: 471 PDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRE 530
Query: 507 WIRKLEKKAMTKLRDSETCRDLSHFLV 533
IR++E A KL++ + L +LV
Sbjct: 531 RIRQIESSAFKKLKNKKRTNHLQQYLV 557
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 195/299 (65%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 273 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 332
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 333 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 392
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ TGLS+
Sbjct: 393 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKR 452
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + + S+D+KIG N K E D + ++I++++ M++D+ ++L+SL +
Sbjct: 453 LMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGT 512
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
RE+QV+ R+G+ D R K+L+EIG++ VS+E +R++E A KL++ + L +LV
Sbjct: 513 REKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 571
>gi|357128311|ref|XP_003565817.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 251
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 164/236 (69%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
RE L+ +T LV ++AR Y G+G F DLLQAG +GVL GAERFD +G KFSTYV+YW
Sbjct: 13 ARERLLVTTEWLVKYIARTYTGMGTAFDDLLQAGKMGVLDGAERFDSEKGCKFSTYVKYW 72
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IRK++ ++A ++ I++P ++ I K+++A++ + +S G+ P D EIA + G+S++ +
Sbjct: 73 IRKAMLALLAENSGVIQLPARMESIIRKVKEAKRVIRSSMGRNPIDAEIATFIGVSVSNV 132
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R A +C R V S+ +IG NAK++E PD S++SP E + R+ M++ + +L+ L +R
Sbjct: 133 RLARKCSRRVVSLYTEIGTGQNAKFMEVTPDTSLESPDEAIFRRQMRERLLLVLDRLPAR 192
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
E VL LR+GL D + +SLE+I ++HVSKEWIRK+EK AM+KLR+ + +L F
Sbjct: 193 EGHVLKLRHGLEDGKCRSLEQISGIYHVSKEWIRKIEKSAMSKLRNEDVHHELKDF 248
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 194/299 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + G+ + WA AAGV ++ L++ + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 390
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ TGLS+
Sbjct: 391 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKR 450
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + + S+DQKIG N K E D + ++I++++ M++D+ ++L+SL +
Sbjct: 451 LMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGT 510
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
RE+QV+ R+G+ D R K+L+EIG++ VS+E +R++E A KL++ + L +LV
Sbjct: 511 REKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRSNHLQQYLV 569
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 190/288 (65%), Gaps = 2/288 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
+L A E +S+ +Q + LE++K+ L++E G+ S+ W++A G+ + + +
Sbjct: 287 KLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGMEQNAFELRVKE 346
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G Y +++++ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD +G+KFSTY
Sbjct: 347 GRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDPDKGFKFSTYA 406
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A +R I++P L IS+I KA+K L HG+ P D E+A+ G+S+
Sbjct: 407 HWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRDEEVAELVGMSV 466
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+++ + + S+D+ IG + E D+ V+SP++ ++RQ +K+DV +L +L
Sbjct: 467 EKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQVLKQDVDGVLCTL 526
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ RER+VL LR+GL+D + ++LEEIG LF V++E IR++E KAM KLR
Sbjct: 527 NPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLR 574
>gi|297605001|ref|NP_001056480.2| Os05g0589200 [Oryza sativa Japonica Group]
gi|255676623|dbj|BAF18394.2| Os05g0589200, partial [Oryza sativa Japonica Group]
Length = 464
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 214/355 (60%), Gaps = 25/355 (7%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 124 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 183
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S +
Sbjct: 184 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKG---SRV 231
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 232 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 289
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 290 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 349
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++
Sbjct: 350 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVRE 409
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYL 441
AR+A+ + G+ P D EIA G+S+A +R A +C R V S+ +IG NAK++
Sbjct: 410 ARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFV 464
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 190/292 (65%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+S+G+Q + LERI+ L++ G S WA AAGV + L++ L +G C++++I
Sbjct: 275 EVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMI 334
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
KS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +WI++++
Sbjct: 335 KSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 394
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
K ++ +R I++P + ++++ARK L + +G++P+D E+A+ GLS+ + +
Sbjct: 395 KSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLT 454
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLV 481
+ S+DQK+G ++ K E D ++ ++++M++ MKKD+ ++L SL RE QV+
Sbjct: 455 PKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVR 514
Query: 482 LRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
R+G+ D R K+L+EIG+L VS+E +R++E A KL++ + L ++V
Sbjct: 515 WRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMV 566
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 192/303 (63%)
Query: 231 SRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHL 290
S RL A E E+S+G+Q + LERI+ L++ G + WA AA V + L++ L
Sbjct: 261 STSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRL 320
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
+ C++++IKS LV+ +A+NY+G G+ DL+Q G G+++G E+FD ++G+KFST
Sbjct: 321 NYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFST 380
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +WIR+++ + ++ +R I++P + ++++ARK + +G++P+D E+A+ TGL
Sbjct: 381 YAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGL 440
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILE 470
S+ + + + S+DQK+G ++ K E D ++ ++++M++ MKKD+ R+LE
Sbjct: 441 SMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLE 500
Query: 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSH 530
SL RE QV+ R+G+ D R K+L+EIG+L VS+E IR++E A KL++ + L
Sbjct: 501 SLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQ 560
Query: 531 FLV 533
+LV
Sbjct: 561 YLV 563
>gi|242089059|ref|XP_002440362.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
gi|241945647|gb|EES18792.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
Length = 529
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 240/431 (55%), Gaps = 17/431 (3%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSH----------LSRIVKT 152
+ LLM+NL+ LE++ A D LE +IL + +LGAL+ F++ L+
Sbjct: 83 YGLLMQNLEELETSLAGKDLKILENDILAHIQQLGALRSFDASTAVGATLLDTLTHDQPD 142
Query: 153 SNVLD--LSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
S++LD + + E +++ ++V S + +RKLK R SE+ S+ P
Sbjct: 143 SSLLDQQIIEFDPETTPLDEEEQEDSQVVVVRSGKSEERKLKRVRASEKGSRISVKVNPR 202
Query: 211 EALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA 270
+ K + + GRR I R ++ + ++ A+LE+I+ + KE G+
Sbjct: 203 RPKKSSRKASSSQFISEWKSHPGRRRIIVREQSALLATIKECASLEKIREKMVKE-GQEV 261
Query: 271 SLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGN 330
S + WA+AAG+ E L L G+ CRE L+ +T LV +AR+Y G+G DLLQAG
Sbjct: 262 SYHRWAEAAGMDEAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTGMGTALDDLLQAGK 321
Query: 331 VGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKA 390
+GVL GAE+FD +G +FSTYV+YWIRK + ++A ++ +P ++ + K+++AR+
Sbjct: 322 MGVLDGAEKFDTRKGCRFSTYVKYWIRKGMLALLAENSGVTLLPARMESIMRKVKEARRG 381
Query: 391 LTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF----APD 446
+ S G+ P D E+A G+S+A +R A +C R S+ +IG +AK+ E A
Sbjct: 382 IRYSEGRNPSDSEVAAAVGVSVANVRLARKCSRRPVSLYSEIGIGQHAKFAEVIPDEAAA 441
Query: 447 RSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506
+ + + R +++ + +L L +RE VL LR+GL D R +SLEEIG ++ VSKE
Sbjct: 442 AAEAPDEAALFRGQLRERLLLVLGRLPAREGHVLRLRHGLEDGRCRSLEEIGGMYRVSKE 501
Query: 507 WIRKLEKKAMT 517
WIRK+EK AM
Sbjct: 502 WIRKIEKSAMA 512
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 192/292 (65%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + S+G+Q + LE+++ L ++ G + WA AGV ++ L++ L +G +C+E++I
Sbjct: 280 EIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 339
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
KS LV+ +A+NY+G G+ DL+Q G G+++GAE++D ++G+KFSTY +WI++++
Sbjct: 340 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVR 399
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
K ++ +R I++P + K+++ARK L + +G+ P+D E+A+ TGLS+ + +
Sbjct: 400 KSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLT 459
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLV 481
+ S++QK+G + K E D ++ +E +++Q MKKD+ ++L+SL+ RE+QV+
Sbjct: 460 PKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIK 519
Query: 482 LRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
R+G++D R K+L+EIG++ VS+E IR++E A KL++ + + L + V
Sbjct: 520 WRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYFV 571
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 183/300 (61%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 193 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 252
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 253 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 312
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TG+ L
Sbjct: 313 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPL 372
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+ K+G C + Y E PD S ++ +E++ R MK+DV R L+ L
Sbjct: 373 RRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGL 431
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+ R+G++D R ++L +IG+L VS+E IR++E A KLR + + L H+L
Sbjct: 432 SPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 491
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 183/300 (61%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 236 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 355
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TG+ L
Sbjct: 356 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPL 415
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+ K+G C + Y E PD S ++ +E++ R MK+DV R L+ L
Sbjct: 416 RRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGL 474
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+ R+G++D R ++L +IG+L VS+E IR++E A KLR + + L H+L
Sbjct: 475 SPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 183/300 (61%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 39 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 98
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 99 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 158
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TG+ L
Sbjct: 159 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPL 218
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+ K+G C + Y E PD S ++ +E++ R MK+DV R L+ L
Sbjct: 219 RRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGL 277
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+ R+G++D R ++L +IG+L VS+E IR++E A KLR + + L H+L
Sbjct: 278 SPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 337
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 184/301 (61%), Gaps = 1/301 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + + WA AAGV E+ L++ L +
Sbjct: 235 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNY 294
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ F DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 295 GIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYS 354
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 355 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPI 414
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+D KIG + Y E D S ++ +E++ R MKKDV L++L
Sbjct: 415 KRVEAAVNLPKYSVSLDSKIGST-DMTYQEVTADPSAETAEEMLNRMSMKKDVHMALDTL 473
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+RE+QV+VLR+GL D R ++L+EIG + VS+E IR++E A KLR + + L +L
Sbjct: 474 TTREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKALKDYL 533
Query: 533 V 533
V
Sbjct: 534 V 534
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 184/301 (61%), Gaps = 1/301 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + + WA AAGV E+ L++ L +
Sbjct: 235 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNY 294
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ F DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 295 GIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYS 354
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 355 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPI 414
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+D KIG + Y E D S ++ +E++ R MKKDV L++L
Sbjct: 415 KRVEAAVNLPKYSVSLDSKIGST-DMTYQEVTADPSAETAEEMLNRMSMKKDVHMALDTL 473
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+RE+QV+VLR+GL D R ++L+EIG + VS+E IR++E A KLR + + L +L
Sbjct: 474 TTREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKALKDYL 533
Query: 533 V 533
V
Sbjct: 534 V 534
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 182/300 (60%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 236 GWRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 355
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TG+ L
Sbjct: 356 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPL 415
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+ K+G C + Y E PD S ++ +E++ R MK+DV R L+ L
Sbjct: 416 RRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGL 474
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+ R+G++D R ++L +IG+L VS+E IR++E A KLR + + L H+L
Sbjct: 475 SPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 178/300 (59%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
RRL A+ E E+S+G+Q LE I+ + +G + WA AAG E L++ L++
Sbjct: 233 ARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLSY 292
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 293 GIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYS 352
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TGL+
Sbjct: 353 HWWIKQAIRKSVLEQTQIIRLPTHMAEASSRVKECRRRLRRQLNRLPTNEEIASDTGLTT 412
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A R S+ K+G C + Y E PD+S ++ +E + R MKKDV L+SL
Sbjct: 413 RRVEAAMSLPRYSVSLSGKVG-CTDVTYQEIMPDKSTETAEETLHRWFMKKDVDTALDSL 471
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RER+V+ R+G++D R ++L IG+L VS+E IR++E A KLR + L +L
Sbjct: 472 SPREREVIRYRFGMDDGRMRTLHNIGELMGVSRERIRQIEMAAFRKLRSKKKVTSLQQYL 531
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 184/279 (65%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
LER++ L + G + WA AAGV++R L++ L +G C++++IKS LV+ + +N
Sbjct: 7 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIXKN 66
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +WI++++ K ++ +R I++P
Sbjct: 67 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 126
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++++ARK L + +G++P+D EIA+ GLS+ + + + S++QKIG
Sbjct: 127 FHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 186
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
N K E D ++ ++++++Q MK+D+ ++L+SL+ RE+QV+ R+G+ D R K+L
Sbjct: 187 NQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 246
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
+EIG++ VS+E IR++E A KL++ + + L +++
Sbjct: 247 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 285
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 178/300 (59%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + +G + + WA AAG E L++ L
Sbjct: 224 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNH 283
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 284 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYS 343
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ + L + P + EIA TG+++
Sbjct: 344 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLRRELKRLPSNEEIAVDTGMTI 403
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S K+G C + Y E PD S ++ +E++ R MKKDV LESL
Sbjct: 404 RRVEAAMSLPKYSVSFTSKVG-CTDVTYQEIMPDTSAETAEEVLHRWLMKKDVNTALESL 462
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE+ V+ R+G+ RP++L +IG++ VS+E IR++E A KLR + + L H+L
Sbjct: 463 SPREKLVMRYRFGIEGGRPRTLHDIGQIMGVSRERIRQIELGAFRKLRSKKRVQSLQHYL 522
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 179/301 (59%), Gaps = 1/301 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+D KIG + Y E D + ++ +E++ R MK+DV + L++L
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIGST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 498
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+RERQV+ LR+GL D R ++L+EIG VS+E IR++E A KLR + L +L
Sbjct: 499 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558
Query: 533 V 533
V
Sbjct: 559 V 559
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 179/301 (59%), Gaps = 1/301 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+D KIG + Y E D + ++ +E++ R MK+DV + L++L
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIGST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 498
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+RERQV+ LR+GL D R ++L+EIG VS+E IR++E A KLR + L +L
Sbjct: 499 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558
Query: 533 V 533
V
Sbjct: 559 V 559
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 179/301 (59%), Gaps = 1/301 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+D KIG + Y E D + ++ +E++ R MK+DV + L++L
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIGST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 498
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+RERQV+ LR+GL D R ++L+EIG VS+E IR++E A KLR + L +L
Sbjct: 499 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558
Query: 533 V 533
V
Sbjct: 559 V 559
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 179/301 (59%), Gaps = 1/301 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 259 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 318
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 319 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 378
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 379 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 438
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+D KIG + Y E D + ++ +E++ R MK+DV + L++L
Sbjct: 439 KRVEAAVNLPKYSVSLDSKIGST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 497
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+RERQV+ LR+GL D R ++L+EIG VS+E IR++E A KLR + L +L
Sbjct: 498 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 557
Query: 533 V 533
V
Sbjct: 558 V 558
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 175/300 (58%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 124 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 183
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 184 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 243
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ + L + P + EIA TG+++
Sbjct: 244 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTI 303
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S K+G C + Y E PD S ++ +E + R MKKDV L+SL
Sbjct: 304 RRVEAAMSLPKYSVSFTSKVG-CTDVTYQEIMPDTSAETAEETLHRWLMKKDVNTALDSL 362
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE+QV+ R+G+ R ++L +IG+L VS+E IR++E A KLR + L H+L
Sbjct: 363 SPREKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQHYL 422
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 175/300 (58%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 224 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 283
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 284 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 343
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ + L + P + EIA TG+++
Sbjct: 344 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTI 403
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S K+G C + Y E PD S ++ +E + R MKKDV L+SL
Sbjct: 404 RRVEAAMSLPKYSVSFTSKVG-CTDVTYQEIMPDTSAETAEETLHRWLMKKDVNTALDSL 462
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE+QV+ R+G+ R ++L +IG+L VS+E IR++E A KLR + L H+L
Sbjct: 463 SPREKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQHYL 522
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 179/301 (59%), Gaps = 1/301 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GR+L A+ E E+S G+Q + LE I+ L + SG + WA AAG E+ L++ LA
Sbjct: 248 GRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAH 307
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G Y + ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 308 GIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 367
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ + ++P + ++++ + L + + P + EIA G+ +
Sbjct: 368 HWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTRRLRRTLQRRPSNEEIAVDIGMPV 427
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+D KIG + Y E D S ++ +E++ R MKKDV + L++L
Sbjct: 428 KRVEAAVNLPKYSVSLDSKIGTT-DMSYQEVTADPSAETAEEMLNRMSMKKDVHQALDAL 486
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+ LR+GL+D R ++L+EIG + VS+E IR++E A KLR + + L +L
Sbjct: 487 GPRERQVVKLRFGLDDGRIRTLQEIGNIMGVSRERIRQIEAGAFRKLRSKKKVKSLRDYL 546
Query: 533 V 533
V
Sbjct: 547 V 547
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 175/300 (58%), Gaps = 1/300 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 223 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 282
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 283 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 342
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ + L + P + EIA TG+++
Sbjct: 343 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTI 402
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S K+G C + Y E PD S ++ +E + R MKKDV L+SL
Sbjct: 403 RRVEAAMSLPKYSVSFTSKVG-CTDVTYQEIMPDTSAETAEETLHRWLMKKDVNTALDSL 461
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
R++QV+ R+G+ R ++L +IG+L VS+E IR++E A KLR + L H+L
Sbjct: 462 SPRKKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQHYL 521
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 188/293 (64%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ LE+ + + WA+AAG+ + +
Sbjct: 75 LQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGMPLKDFR 134
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 135 RRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 194
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 195 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIATR 254
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 255 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKSLLREDLEN 313
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 314 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 177/301 (58%), Gaps = 1/301 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GR+L A+ E E+S G+Q + LE I+ L + +G + WA AAG E L++ L
Sbjct: 248 GRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTDENTLRKRLDH 307
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +C+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 308 GIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 367
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ + ++P + ++++ K L + P + EIA G+ +
Sbjct: 368 HWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTKRLRRKLKRRPSNEEIAVDIGMPV 427
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+ +A + S+D KIG + Y E D S ++ +E++ R MKKDV + L++L
Sbjct: 428 KRVEAAVSLPKYSVSLDSKIGST-DMTYQEVTADPSAETAEEMLNRMSMKKDVHQALDTL 486
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+ LR+G+ND R ++L+EIG + VS+E IR++E A KLR + + L +L
Sbjct: 487 SPRERQVVKLRFGINDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRGKKKVKCLMDYL 546
Query: 533 V 533
V
Sbjct: 547 V 547
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 221/372 (59%), Gaps = 22/372 (5%)
Query: 151 KTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
+T N D+ E ++ + DY ++ +P+K+ RK KT+R E + +
Sbjct: 27 QTRNEGDIDYSALAEAQIKEGTDY--VELTLPTKKS--RKAKTSRRKETATK-------- 74
Query: 211 EALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGK 268
K+P + R L GR RL A E E+++ + + LER++ L + +
Sbjct: 75 -------KKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESR 127
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
+ WA+AAG+ + ++ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 128 VPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 187
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K
Sbjct: 188 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 247
Query: 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRS 448
K L+ G+ P + EIA+ +++ ++R ++ ++ S++ IG +++ +F +
Sbjct: 248 KILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EAD 306
Query: 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWI 508
++P++ V + +++D+ +L++L +RER VL LRYGL+D R K+LEEIG++F+V++E I
Sbjct: 307 GETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERI 366
Query: 509 RKLEKKAMTKLR 520
R++E KA+ KLR
Sbjct: 367 RQIEAKALRKLR 378
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 179/286 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L A E +S+ +Q + LE+I+ L+++ G+ +L+ W+QA + + L+ + G
Sbjct: 282 KLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVSLDQTSLELRVKEGR 341
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++L+ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD GYKFSTY +
Sbjct: 342 SAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKFDPEMGYKFSTYATW 401
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+++++ +A +R I++P + IS+I KA+ ++ G+ P D E+A G+S+ +
Sbjct: 402 WIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPRDEEVAAMVGMSVEK 461
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S+D+ IG E D+ V SP++ +M Q +K+D+ +L SL+
Sbjct: 462 LLFIVKSARPPTSMDRPIGKDGEQSLGEMVADKGVGSPEDDIMTQVLKQDIEDVLRSLNP 521
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
ER+VL LR+GL+ + +L+++G +F V++E IR++E KA+ KLR
Sbjct: 522 MEREVLRLRFGLSGAQSMTLKDLGIIFKVTRERIRQIEAKALRKLR 567
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 221/372 (59%), Gaps = 22/372 (5%)
Query: 151 KTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
+T N D+ E ++ + DY ++ +P+K+ RK KT+R E + +
Sbjct: 11 QTRNEGDIDYSALAEAQIKEGTDY--VELTLPTKKS--RKAKTSRRKETATK-------- 58
Query: 211 EALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGK 268
K+P + R L GR RL A E E+++ + + LER++ L + +
Sbjct: 59 -------KKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESR 111
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
+ WA+AAG+ + ++ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 112 VPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 171
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K
Sbjct: 172 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 231
Query: 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRS 448
K L+ G+ P + EIA+ +++ ++R ++ ++ S++ IG +++ +F +
Sbjct: 232 KILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EAD 290
Query: 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWI 508
++P++ V + +++D+ +L++L +RER VL LRYGL+D R K+LEEIG++F+V++E I
Sbjct: 291 GETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERI 350
Query: 509 RKLEKKAMTKLR 520
R++E KA+ KLR
Sbjct: 351 RQIEAKALRKLR 362
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 181/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L +E + N WA A G+ + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERIREQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L++L
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLESVLDTLSP 332
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 182/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ +L+++ + WA A ++ + L G
Sbjct: 85 RLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNMTLPAFRHRLHLGR 144
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 145 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 204
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 205 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 264
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L++L
Sbjct: 265 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVAKNLLREDLENVLDTLSP 323
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 324 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 369
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 182/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+++ + WA+A + + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 332
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 184/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L +E + + WA A ++ +
Sbjct: 84 LQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVDMALPAFR 143
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 144 HRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 203
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 204 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 263
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 264 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLES 322
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 323 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 375
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 181/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ R+L+SL
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLLREDLERVLDSLGP 331
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 183/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+++ + + WA+A + + L G
Sbjct: 96 RLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGR 155
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 156 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 215
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 216 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 275
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 276 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 334
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 335 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 380
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 181/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+ + + WA+A + + L G
Sbjct: 95 RLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGR 154
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 155 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 214
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 215 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 274
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 275 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 333
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 334 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 379
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 190/307 (61%), Gaps = 3/307 (0%)
Query: 216 GLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
G K+P + R L GR RL A E E+++ + + LER++ L + G+ S
Sbjct: 59 GKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDK 118
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WAQ G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 119 EWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 178
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 179 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQ 238
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453
+ P + EIA +++ ++R ++ ++ S++ IG +++ +F + ++P+
Sbjct: 239 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 297
Query: 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513
+ V + +++D+ +L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E
Sbjct: 298 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 357
Query: 514 KAMTKLR 520
KA+ KLR
Sbjct: 358 KALRKLR 364
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 182/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WA+A V + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQVPLPQFRYRLHIGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 272 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 330
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 331 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 185/287 (64%), Gaps = 2/287 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
RL A E E+++ + + +LE I++TL + G+ + WA A+ + R + L G
Sbjct: 88 RLLRAEEEIELARQIADLLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIG 147
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 148 RKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 207
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++
Sbjct: 208 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIE 267
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L+SL
Sbjct: 268 KLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDSLS 326
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 327 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 373
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 184/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L +E + + WA A ++ +
Sbjct: 84 LQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVEMALPAFR 143
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 144 HRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 203
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 204 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 263
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 264 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLES 322
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 323 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 375
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 186/293 (63%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + +ER++ L ++ + + WA+A +S +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQLSLPTFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 205
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 206 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 265
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +
Sbjct: 266 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLLREDLEK 324
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L+SL RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 325 VLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 185/293 (63%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + + WA+A + +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 146 YRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 205
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 206 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 265
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +
Sbjct: 266 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEK 324
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L+SL RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 325 VLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 181/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 185/293 (63%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L ++ + + WA+A + +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 205
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 206 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 265
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +
Sbjct: 266 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEK 324
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L+SL RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 325 VLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + ++ WA A + K
Sbjct: 82 LQEIGRIRLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVDMELPKFK 141
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 142 RRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 201
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 202 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATS 261
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 262 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKNLLREDLES 320
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L SL RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 321 VLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 373
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 184/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER +T LE G + WA+ + + +
Sbjct: 89 LQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAER 268
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 269 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKSLLREDLED 327
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 328 VLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 380
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 190/307 (61%), Gaps = 3/307 (0%)
Query: 216 GLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
G K+P + R L GR RL A E E+++ + + LER++ L + G+ S
Sbjct: 58 GKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDK 117
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+ G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 118 EWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 177
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 178 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQ 237
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453
+ P + EIA +++ ++R ++ ++ S++ IG +++ +F + ++P+
Sbjct: 238 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 296
Query: 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513
+ V + +++D+ +L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E
Sbjct: 297 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 356
Query: 514 KAMTKLR 520
KA+ KLR
Sbjct: 357 KALRKLR 363
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 182/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 332
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 182/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 272 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 330
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 331 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 181/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ R+L+SL
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLLREDLERVLDSLGP 331
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL++ R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 332 RERDVLRLRYGLDNGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 181/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E E+G S+ WA A + +
Sbjct: 114 LQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLTRFR 173
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 174 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 233
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 234 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 293
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 294 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLLREDLEG 352
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 353 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 405
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 187/304 (61%), Gaps = 2/304 (0%)
Query: 218 KQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWA 276
KQ T S L GR RL A E E+++ + + LERI+ L + + WA
Sbjct: 77 KQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWA 136
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
+A + + L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++
Sbjct: 137 EAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 196
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 396
AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G
Sbjct: 197 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMG 256
Query: 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIV 456
+ P + EIA +++ ++R ++ ++ S++ IG +++ +F + ++P++ V
Sbjct: 257 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQV 315
Query: 457 MRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516
+ +++D+ ++L+SL RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+
Sbjct: 316 SKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 375
Query: 517 TKLR 520
KLR
Sbjct: 376 RKLR 379
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 181/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E E+G S+ WA A + +
Sbjct: 114 LQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLARFR 173
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 174 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 233
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 234 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 293
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 294 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLLREDLEG 352
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 353 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 405
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 182/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 189/326 (57%), Gaps = 4/326 (1%)
Query: 212 ALQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA 270
A++ G K+P+ S L G L A E E++K +Q + +LE I+ L +E+G
Sbjct: 190 AMRIGNKRPSTDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 271 SLN--CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
L+ WA AAG++ L+Q L G + E+I++ LV+ +A+ Y + F DL+Q
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQE 309
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
G VG+++GAE+FD RGYKFSTY +WIR+++++ ++ +R I++P L IS+I K
Sbjct: 310 GCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKME 369
Query: 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFA-PDR 447
+ +G+ P EIA +S+ +I + + S+ Q +G + +E D
Sbjct: 370 QKFALYNGRPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDA 429
Query: 448 SVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEW 507
+ + P+++ + +K+D+ +L +L+ RER VL LRYGL+D R K+LEEIG +F V++E
Sbjct: 430 NAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRER 489
Query: 508 IRKLEKKAMTKLRDSETCRDLSHFLV 533
IR++E KA+ KL+ + L + V
Sbjct: 490 IRQIEAKALRKLKQPSRNQVLQEYFV 515
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 179/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + NLE I E E+G S WA + +
Sbjct: 121 LQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEMPVIRFR 180
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 181 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 240
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 241 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 300
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F S ++P+ V + +++D+
Sbjct: 301 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDS-ENPELDVAKTLLREDLEG 359
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 360 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 412
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 196/320 (61%), Gaps = 3/320 (0%)
Query: 203 TSLLSLPSEALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKT 260
+ L S P + G K+P + R L GR RL A E E+++ + + LERI+
Sbjct: 49 SKLASTPRRTAERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRE 108
Query: 261 TLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
+E E + S W + + R ++ L G ++++++S LV+ +A+ Y G+
Sbjct: 109 RIEDELDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 168
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNRE 380
F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L
Sbjct: 169 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 228
Query: 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
IS+I+K K L+ G+ P + EIA+ +++ ++R ++ ++ S++ IG +++
Sbjct: 229 ISRIKKTTKILSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 288
Query: 441 LEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKL 500
+F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+LEEIG++
Sbjct: 289 GDFI-EADGETPEDQVSKSLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQI 347
Query: 501 FHVSKEWIRKLEKKAMTKLR 520
F+V++E IR++E KA+ KLR
Sbjct: 348 FNVTRERIRQIEAKALRKLR 367
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + WA+ + +
Sbjct: 76 LQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEMELPAFR 135
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
Q L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 136 QRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 195
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 196 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIADR 255
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 256 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKNLLREDLES 314
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 315 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 367
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 181/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 146 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 205
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 206 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 265
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 266 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 325
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 326 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 384
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 385 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 437
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 181/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 143 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 202
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 203 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 262
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 263 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 322
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 323 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 381
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 382 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 434
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 181/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 136 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEMPVIRFR 195
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 196 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 255
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 256 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 315
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 316 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 374
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 375 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 427
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 182/287 (63%), Gaps = 2/287 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
RL A E E+++ + + +LE I+ T + G+ + WA A + R + L G
Sbjct: 93 RLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIG 152
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIE 272
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L+SL
Sbjct: 273 KLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDSLS 331
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 332 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 181/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 139 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 198
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 199 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 258
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 259 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 318
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 319 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 377
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 378 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 430
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 180/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI L K G+ + WA+A + ++ L G
Sbjct: 77 RLLRAEEEIELARKIADLLELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGR 136
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 137 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 196
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA +++ +
Sbjct: 197 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEK 256
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L++L
Sbjct: 257 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSP 315
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 316 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 361
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 166/249 (66%), Gaps = 1/249 (0%)
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
L WA+AAG++ + +A+G ++++++S LV+ +A+ Y G+ F DL+Q G++
Sbjct: 140 LRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 199
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L
Sbjct: 200 GLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLL 259
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKS 451
+ G+ P + EIA +++ ++R ++ ++ S++ IG +++ +F + ++
Sbjct: 260 SQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGET 318
Query: 452 PKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511
P++ V + +++D+ +L +L RER VL LRYGL+D R K+LEEIG+LF+V++E IR++
Sbjct: 319 PEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQI 378
Query: 512 EKKAMTKLR 520
E KA+ KLR
Sbjct: 379 EAKALRKLR 387
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 180/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WAQ ++ + L G
Sbjct: 84 RLLRADEEIELARKIADLLELERIRADLAEQLEREPTDAEWAQKVDMALPAFRHRLHLGR 143
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 144 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 204 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 263
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L +L
Sbjct: 264 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLESVLGTLSP 322
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 323 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 368
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + + WA + + + L G
Sbjct: 76 RLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVNMPLQAFRHRLYVGR 135
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 136 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 195
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 196 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIADRMEMTIEK 255
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L++L
Sbjct: 256 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKNLLREDLESVLDTLSP 314
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 315 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 360
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 181/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++G+ WA + +
Sbjct: 167 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 226
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 227 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 286
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 287 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 346
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 347 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 405
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 406 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 458
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 181/288 (62%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + NLE++K L ++ + SL WAQAA +S+R LK+ L
Sbjct: 20 RVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRELKKQLLL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L ++G+ E+A GL+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPELADELGLTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + +E D + +P + +K+D+ R+L L
Sbjct: 200 KQVRDYLEKSRQPLSLDLRVGDNNDTELIELLEDDGL-TPDDYATHAALKRDLARMLNDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++++VL LR+GL D P +L +IG+ +S+E +R++E++A+ KLR
Sbjct: 259 TAQQQEVLTLRFGLRDGTPHTLAKIGEHLSISRERVRQIEREALAKLR 306
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 182/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER+ L ++ + + WA+A + + + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 272 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLLREDLEKVLDSLSP 330
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 331 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 180/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ + + G+ + W+QA + ++ L G
Sbjct: 82 RLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQRRLYLGR 141
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 142 KAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 201
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA +++ +
Sbjct: 202 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEK 261
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L++L
Sbjct: 262 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGENPEDEVSKNLLREDLENVLDTLSP 320
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 321 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 182/291 (62%), Gaps = 6/291 (2%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA-----SLNCWAQAAGVSERVLKQH 289
RL A E E+++ + + +ER++ L +E G A + WA+ G++ +
Sbjct: 116 RLLRADEEIELARKIADLLEMERVRDRLCQELGCTAEELERNPEPWAKELGMTVPAFRHR 175
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFS
Sbjct: 176 LFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 235
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 236 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRME 295
Query: 410 LSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL 469
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L
Sbjct: 296 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKHLLREDLETVL 354
Query: 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L RER VL LRYGL+D R K+LEEIG+LF+V++E IR++E KA+ KLR
Sbjct: 355 CTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 405
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 199/324 (61%), Gaps = 5/324 (1%)
Query: 199 ESIETSLLSLPSEALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLE 256
E+++T+L + + + G K+P + R L GR RL A E E+++ + + LE
Sbjct: 39 ETVKTALTA--ARRGERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELE 96
Query: 257 RIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYR 316
RI+ + + S WA+ + ++ L +G ++++++S LV+ +A+ Y
Sbjct: 97 RIRERMADRLERYPSDAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYM 156
Query: 317 GLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCK 376
G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 157 NRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVH 216
Query: 377 LNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCL 436
L IS+I+K K L+ G+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 217 LYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEE 276
Query: 437 NAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEE 496
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+LEE
Sbjct: 277 DSRLGDFI-EADGETPEDQVSKSLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEE 335
Query: 497 IGKLFHVSKEWIRKLEKKAMTKLR 520
IG++F+V++E IR++E KA+ KLR
Sbjct: 336 IGQIFNVTRERIRQIEAKALRKLR 359
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E++ GK WA + +
Sbjct: 97 LQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFR 156
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 157 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 216
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 217 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 276
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P + V + +++D+
Sbjct: 277 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPDQDVAKNLLREDLEG 335
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 336 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLR 388
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ ++ + + WA A + ++ L G
Sbjct: 107 RLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGR 166
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 167 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 226
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 227 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEK 286
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L +L
Sbjct: 287 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLLREDLESVLSTLSP 345
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 346 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 391
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 183/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LE+ + L +E + + WA + + +
Sbjct: 72 LQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEMELPAFR 131
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 132 RRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 191
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +
Sbjct: 192 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIATH 251
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 252 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDDVSKNLLREDLEH 310
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L+SL RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 311 VLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 363
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 177/296 (59%), Gaps = 8/296 (2%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV--LKQHLAFGWYCREE 299
E E+SK V ++ +LE+ + + +E GK+ + + WAQ G + V L++H+ G +E
Sbjct: 296 EIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKER 355
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
++ + LV+ +A+ Y G+ DL+Q G++G+++G E+FD RG++FSTY +WIR+S
Sbjct: 356 MVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQS 415
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ +R I++P ++ IS I+K KAL G+ P + EI + G+ A+ R
Sbjct: 416 ITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICESVGIDRAKYRLVM 475
Query: 420 ECLRIVGSIDQKIGDCLNAKYLE---FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRE 476
EC R + S++ + + +L AP+ +E R +++ + ++L L +RE
Sbjct: 476 ECSRNIVSLETPLRSGDDVHFLGESLIAPEERA---EENCSRDTLRESIEKVLHCLSTRE 532
Query: 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
R+V+ +R+GL D RP++LEE+G F+V++E IR++E KA+ KLR L +L
Sbjct: 533 REVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRTPAENNFLDEYL 588
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 178/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA + + L G
Sbjct: 76 RLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVDMELPAFRYRLHVGR 135
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 136 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 195
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 196 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEK 255
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L++L
Sbjct: 256 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKNLLREDLESVLDTLSP 314
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 315 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 360
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER+ L+ + + + WA A + +
Sbjct: 79 LQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVEMPLPQFR 138
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 139 HRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 198
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 199 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 258
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 259 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLES 317
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 318 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 370
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 172/285 (60%), Gaps = 3/285 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN--CWAQAAGVSERVLKQHLAFGWYC 296
A E E++K +Q + +LE I+ L +E+G A + WA AAG++ + L Q L G
Sbjct: 32 AGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAAGLNVQALHQRLRDGKSA 91
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
+ E+I++ LV+ +A+ Y + F DL+Q G VG+++GAE+FD RGYKFSTY +WI
Sbjct: 92 KNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAEKFDFQRGYKFSTYAHWWI 151
Query: 357 RKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIR 416
R+++++ ++ +R I++P L IS+I K + +G+ P EIA +S +I
Sbjct: 152 RQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALHNGRNPTTEEIAAEMDMSAEKIT 211
Query: 417 SASECLRIVGSIDQKIGDCLNAKYLEFA-PDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S+ Q +G + +E D + + P+++ + +K+D+ +L +L+ R
Sbjct: 212 QIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSGKSLLKEDLENVLNTLNPR 271
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
ER VL LRYGL+D R K+LEEIG +F V++E IR++E KA+ KL+
Sbjct: 272 ERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLK 316
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L + + + WA + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 179/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G WA + +
Sbjct: 166 LQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFR 225
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 226 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 285
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 286 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAES 345
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 346 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 404
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 405 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 457
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 147 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 206
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 207 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 266
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 267 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 326
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 327 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 385
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 386 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 178/293 (60%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E + G WA + +
Sbjct: 160 LQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDMPLIKFR 219
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 220 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 279
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 280 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAES 339
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 340 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 398
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 399 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 451
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 147 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 206
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 207 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 266
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 267 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 326
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 327 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 385
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 386 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 180/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + WA A ++ ++ L G
Sbjct: 94 RLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDMALPEFRRRLYLGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L++L
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLESVLDTLSP 332
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 184/304 (60%), Gaps = 2/304 (0%)
Query: 218 KQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWA 276
KQ T S L GR RL A E E+++ + + LER++ L + + WA
Sbjct: 65 KQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPHDREWA 124
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
A + + L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++
Sbjct: 125 AVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 184
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 396
AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G
Sbjct: 185 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMG 244
Query: 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIV 456
+ P + EIA +++ ++R ++ ++ S++ IG +++ +F + + P++ V
Sbjct: 245 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGEMPEDQV 303
Query: 457 MRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516
+ +++D+ +L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+
Sbjct: 304 SKSLLREDLEGVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 363
Query: 517 TKLR 520
KLR
Sbjct: 364 RKLR 367
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 154 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFR 213
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 214 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 273
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 274 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 333
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 334 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 392
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 393 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 445
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 184/301 (61%), Gaps = 6/301 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + NLE++K L ++ + SL WAQAA +S+R LK+ L
Sbjct: 20 RVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRQLKKQLLL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L ++G+ E+A GL+
Sbjct: 140 YWWIRQAITRAIAEQSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPELADELGLTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + +E D + P + +K+D+ R+L L
Sbjct: 200 KQVRDYLEKSRQPLSLDLRVGDNNDTELIELEDDGEL--PDDYATHAALKRDLARMLNDL 257
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+++++VL LR+GL D P +L +IG+ ++S+E +R++E ++ KLR + R L +L
Sbjct: 258 TAQQQEVLTLRFGLRDGTPHTLAKIGEHLNISRERVRQIEHGSLAKLRKQK--RKLGEYL 315
Query: 533 V 533
Sbjct: 316 A 316
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 184/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + ++ LER +T LE G + WA+ G + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQALPKFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA+
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPTEEEIAER 262
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 263 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKSLLREDLED 321
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 322 VLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 177/286 (61%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL E E+++ + + LE + E ++G+ WA + ++ L G
Sbjct: 138 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGR 197
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 198 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 257
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++ +
Sbjct: 258 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 317
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + +++P++ V + +++D+ +L +L
Sbjct: 318 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSP 376
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 377 RERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 422
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + +ER++ L + + WA+A + +
Sbjct: 82 LQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDRLDRDPHDSEWAEAVELPINSFR 141
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 142 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 201
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 202 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 261
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +
Sbjct: 262 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEK 320
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L+ L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 321 VLDGLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 373
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 93 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDMPLSKFR 152
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 153 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 212
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 213 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 272
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 273 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEG 331
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYG++D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 332 VLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 384
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 178/293 (60%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E + G WA + +
Sbjct: 199 LQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFR 258
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 259 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 318
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 319 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAES 378
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 379 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 437
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 438 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 490
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 92 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFR 151
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 152 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 211
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 212 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 271
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 272 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEG 330
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYG++D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 331 VLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 383
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 268
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 269 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEG 327
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYG++D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 328 VLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 380
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 268
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 269 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEG 327
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYG++D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 328 VLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 380
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 177/286 (61%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + WA + + + L G
Sbjct: 81 RLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDMPLQSFRHRLHIGR 140
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 141 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 200
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 201 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 260
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L +L
Sbjct: 261 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLETVLCTLSP 319
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG+LF+V++E IR++E KA+ KLR
Sbjct: 320 RERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 365
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 181/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + WA A +S +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVKMSVGQFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 HRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 262
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 263 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLES 321
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 322 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 90 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLPKFR 149
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 150 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 209
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 210 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 269
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 270 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEG 328
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYG++D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 329 VLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 381
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 268
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 269 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEG 327
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYG++D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 328 VLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 380
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 176/286 (61%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI L + L WA + + L G
Sbjct: 74 RLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGR 133
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 134 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 193
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 194 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 253
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L++L
Sbjct: 254 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLLREDLETVLDTLSP 312
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 313 RERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 358
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 90 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLAKFR 149
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 150 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 209
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 210 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 269
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 270 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEG 328
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYG++D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 329 VLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 381
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER+ L + + WA+A + +
Sbjct: 68 LQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDMPLPKFQ 127
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 128 RRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 187
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 188 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 247
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 248 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLLREDLES 306
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L +RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 307 VLGTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 359
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 178/293 (60%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + + G + WA + +
Sbjct: 157 LQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFR 216
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 217 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 276
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 277 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 336
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 337 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLLREDLEG 395
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 396 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLR 448
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 174/285 (61%), Gaps = 10/285 (3%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV--LKQHLAFGWYCREE 299
E E+S+ V V+ +LER + + ++ GK+ + WA+ G E V L++H+ G +E
Sbjct: 426 EVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGEDVEALRKHIRDGRSAKER 485
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
++ + LV+ +A+ Y G+ DL+Q G++G+++G E+FD RG++FSTY +WIR+S
Sbjct: 486 MVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAGRGFRFSTYATWWIRQS 545
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ +R I++P ++ IS I+K KAL G+ P + EI + G+ +A+ R
Sbjct: 546 ITRAISDSSRSIRLPVHVHDTISMIRKHTKALHTQLGRPPREDEICESVGIDIAKYRLIM 605
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKE----IVMRQHMKKDVFRILESLDSR 475
EC + + S++ + + L S+ SP+E V R ++ + ++L L +R
Sbjct: 606 ECSQNIVSLETPMHGTDDIHNL----GESLISPEERSEDTVSRDTLRDSIEKVLRCLTAR 661
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
ER+V+ +R+GL D RP++LEE+G F+V++E IR++E KA+ KLR
Sbjct: 662 EREVIRMRFGLADGRPRTLEEVGVKFNVTRERIRQIESKALKKLR 706
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 178/286 (62%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER + L + + + WA + + L G
Sbjct: 94 RLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 332
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 378
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 178/293 (60%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + + G + WA + +
Sbjct: 140 LQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEMPNIKFR 199
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 200 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 259
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 260 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 319
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 320 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLLREDLEG 378
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 379 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLR 431
>gi|281412780|ref|YP_003346859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
gi|281373883|gb|ADA67445.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
Length = 407
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 150/239 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 223 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 282
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ E + S++ IG+ ++ +F D S+ SPK+ MR M++++ ++L++L R
Sbjct: 283 KEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPR 342
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
E VL +RYGL D +PK+LEE+G+ F+V++E IR++E KA+ KLR + L L L
Sbjct: 343 EAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 401
>gi|403253616|ref|ZP_10919917.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
gi|418045507|ref|ZP_12683602.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima]
gi|351676392|gb|EHA59545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|402811150|gb|EJX25638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
Length = 407
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 150/239 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 223 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 282
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ E + S++ IG+ ++ +F D S+ SPK+ MR M++++ ++L++L R
Sbjct: 283 KEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPR 342
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
E VL +RYGL D +PK+LEE+G+ F+V++E IR++E KA+ KLR + L L L
Sbjct: 343 EAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 401
>gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
gi|6831649|sp|P77994.3|RPOD_THEMA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|4982015|gb|AAD36519.1|AE001796_11 RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
Length = 399
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 150/239 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 155 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 214
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 215 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 274
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ E + S++ IG+ ++ +F D S+ SPK+ MR M++++ ++L++L R
Sbjct: 275 KEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPR 334
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
E VL +RYGL D +PK+LEE+G+ F+V++E IR++E KA+ KLR + L L L
Sbjct: 335 EAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 393
>gi|148270473|ref|YP_001244933.1| RpoD family RNA polymerase sigma factor [Thermotoga petrophila
RKU-1]
gi|170289132|ref|YP_001739370.1| RpoD family RNA polymerase sigma factor [Thermotoga sp. RQ2]
gi|147736017|gb|ABQ47357.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga
petrophila RKU-1]
gi|170176635|gb|ACB09687.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga sp. RQ2]
Length = 407
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 150/239 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 223 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 282
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ E + S++ IG+ ++ +F D S+ SPK+ MR M++++ ++L++L R
Sbjct: 283 KEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPR 342
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
E VL +RYGL D +PK+LEE+G+ F+V++E IR++E KA+ KLR + L L L
Sbjct: 343 EAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 401
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 177/293 (60%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E G WA +S +
Sbjct: 156 LQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEMSLIKFR 215
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G + ++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 216 RRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 275
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 276 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 335
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 336 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 394
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 395 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 447
>gi|222100016|ref|YP_002534584.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
gi|221572406|gb|ACM23218.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
Length = 392
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 150/239 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 148 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 207
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ +G+ P E+AK G +I
Sbjct: 208 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKYGEEPSVEELAKMMGKPPEKI 267
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ E + S++ IG+ ++ +F D SV SPK+ MR M++++ ++L++L R
Sbjct: 268 KEILEAAKETISLESPIGEDEDSSIEDFVADESVPSPKKEAMRMLMREELEKVLKTLSPR 327
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
E VL +RYGL D +PK+LEE+G+ F+V++E IR++E KA+ KLR + L L L
Sbjct: 328 EAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 386
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 177/286 (61%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL E E+++ + + LE + E ++G+ WA + ++ L G
Sbjct: 182 RLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPLIKFRRRLMLGR 241
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 242 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 301
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++ +
Sbjct: 302 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 361
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + +++P++ V + +++D+ +L +L
Sbjct: 362 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVLATLSP 420
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 421 RERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 466
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 176/293 (60%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E + G WA + +
Sbjct: 128 LQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFR 187
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E+++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 188 RRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 247
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 248 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAES 307
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 308 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 366
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 367 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 419
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 95 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 154
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 155 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 214
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 215 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 274
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 275 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDLEG 333
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG+LF+V++E IR++E KA+ KLR
Sbjct: 334 VLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 95 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 154
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 155 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 214
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 215 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 274
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 275 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDLEG 333
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG+LF+V++E IR++E KA+ KLR
Sbjct: 334 VLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 152 LQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPVIKFR 211
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 212 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 271
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 272 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 331
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + +++P++ V + +++D+
Sbjct: 332 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEG 390
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 391 VLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 443
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 184/304 (60%), Gaps = 19/304 (6%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-----------WA 276
L GR RL A E E+++ + + LERI+ + ++ L+C WA
Sbjct: 73 LQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQ------LDCDPDDLERHPEPWA 126
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
++ + L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++
Sbjct: 127 SEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 186
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 396
AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G
Sbjct: 187 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMG 246
Query: 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIV 456
+ P + EIA+ +++ ++R ++ ++ S++ IG +++ +F + ++P++ V
Sbjct: 247 RKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQV 305
Query: 457 MRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516
+ +++D+ +L +L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+
Sbjct: 306 SKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 365
Query: 517 TKLR 520
KLR
Sbjct: 366 RKLR 369
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 80 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 139
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 140 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 199
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 200 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 259
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 260 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDLEG 318
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG+LF+V++E IR++E KA+ KLR
Sbjct: 319 VLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 371
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 169/290 (58%), Gaps = 5/290 (1%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN-----CWAQAAGVSERVLKQHL 290
L E E++ +Q + LE ++ LE+E+ + + WA AA V+ER LK+ L
Sbjct: 268 LLTGEQEVELAMRIQDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIAANVTERELKERL 327
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
G + ++I++ LV+ +A+ Y + F DL+Q G VG+++GAE+FD RGYKFST
Sbjct: 328 DAGKRAKNQMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFST 387
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +WIR+++++ ++ +R I++P L IS++ K + L +G+ P EIA+ +
Sbjct: 388 YAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQLVMKYGRDPTTEEIAEVMDM 447
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILE 470
++ +I + + S+ Q + D + E D + P + + +K+D+ +L
Sbjct: 448 TVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDATGKVLLKEDLENVLN 507
Query: 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L RER VL LRYG++D R K+LEEIG +F V++E IR++E KA+ KLR
Sbjct: 508 TLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLR 557
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 172/296 (58%), Gaps = 4/296 (1%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
R EAE ++ A LE + + + + N WA+A G+ L + L G RE
Sbjct: 133 REEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRER 192
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ +S R LV+ +A Y+G G+ DL+Q G++G+L+GAERFD RGYK STYV +WIR++
Sbjct: 193 INQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQA 252
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I + +A +R I++P + ++KI +AR L+ + P EIA++ ++++ +R S
Sbjct: 253 IVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVS 312
Query: 420 ECLRIVGSIDQKIGD--CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRER 477
E R S+DQ + C+ + + PD + +P+++V RQ MK++V R L +L RE
Sbjct: 313 ERSRTPISVDQAVTSQGCMTLQEIIPGPDET--TPQKMVKRQLMKQEVERALNTLCEREA 370
Query: 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
+L L +G+N P S EEIG+L +S+E +R++ A++KLR + L +++
Sbjct: 371 YILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 426
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 183/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + + WA A + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 262
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 263 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLES 321
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 322 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 183/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + + WA A + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 262
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 263 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLES 321
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 322 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 374
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 183/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + + WA A + +
Sbjct: 68 LQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFR 127
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 128 RRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 187
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 188 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 247
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 248 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLES 306
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 307 VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 359
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 165/259 (63%), Gaps = 1/259 (0%)
Query: 262 LEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIP 321
E+++G WA + ++ L G +E++++S LV+ +A+ Y G+
Sbjct: 199 FEQDNGHYPDNKEWAVLVDMPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLS 258
Query: 322 FSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREI 381
F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L I
Sbjct: 259 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 318
Query: 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYL 441
S+I+K K L+ G+ P + EIA+ +++ ++R ++ ++ S++ IG +++
Sbjct: 319 SRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 378
Query: 442 EFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLF 501
+F + +++P++ V + +++D+ +L +L RER VL LRYGL+D R K+LEEIG++F
Sbjct: 379 DFI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIF 437
Query: 502 HVSKEWIRKLEKKAMTKLR 520
V++E IR++E KA+ KLR
Sbjct: 438 DVTRERIRQIEAKALRKLR 456
>gi|383785810|ref|YP_005470379.1| sigma-70 family RNA polymerase sigma factor [Fervidobacterium
pennivorans DSM 9078]
gi|383108657|gb|AFG34260.1| RNA polymerase sigma factor, sigma-70 family [Fervidobacterium
pennivorans DSM 9078]
Length = 371
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 154/247 (62%), Gaps = 1/247 (0%)
Query: 283 ERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
ER L Q G +EELI S LV+ +A+ Y G G+ F DL+Q G++G+++ E+FD
Sbjct: 115 ERRLAQRAQMGDKKAKEELIISNLRLVVSMAKRYLGKGLSFLDLIQEGSLGLIKAVEKFD 174
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
++GYKFSTY +WIR++I++ +A AR I++P + I+KIQK ++ HG+ P
Sbjct: 175 WSKGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVETINKIQKIKREYMQEHGEEPPL 234
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHM 461
IA+ G + +I + S++ +G+ ++ +F D SV SPK+ +R M
Sbjct: 235 EYIAEQVGKPVEKIEEILQSTPETLSLETPVGEEEDSSMADFVADESVGSPKKEAIRTLM 294
Query: 462 KKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521
K+++ ++LE+L+ RE+ VL +RYG+ D +PK+LEE+G+ F V++E IR++E KA+ KLR
Sbjct: 295 KEEIDKLLETLNDREKMVLKMRYGILDGKPKTLEEVGQYFGVTRERIRQIEVKALRKLRH 354
Query: 522 SETCRDL 528
R L
Sbjct: 355 PSRSRYL 361
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 172/296 (58%), Gaps = 4/296 (1%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
R EAE ++ A LE + + + + N WA+A G+ L + L G RE
Sbjct: 26 REEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRER 85
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ +S R LV+ +A Y+G G+ DL+Q G++G+L+GAERFD RGYK STYV +WIR++
Sbjct: 86 INQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQA 145
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I + +A +R I++P + ++KI +AR L+ + P EIA++ ++++ +R S
Sbjct: 146 IVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVS 205
Query: 420 ECLRIVGSIDQKIGD--CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRER 477
E R S+DQ + C+ + + PD + +P+++V RQ MK++V R L +L RE
Sbjct: 206 ERSRTPISVDQAVTSQGCMTLQEIIPGPDET--TPQKMVKRQLMKQEVERALNTLCEREA 263
Query: 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
+L L +G+N P S EEIG+L +S+E +R++ A++KLR + L +++
Sbjct: 264 YILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 319
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 177/293 (60%), Gaps = 2/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E E++ V+V+ E I+ L+++ + + W +A + S R L+ L G + ++
Sbjct: 75 EVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGRVAKRKM 134
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 135 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 194
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + P + E+A +SL+++ E
Sbjct: 195 TRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQQLQRNPNEQELANELNVSLSQLHQLLE 254
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQV 479
R S++ ++G + + ++ D ++ P+E + M++++F +L + L RE+ V
Sbjct: 255 LRRQSLSLNHRVGKAEDTELVDLLEDSELQLPEERMSEAMMRQEIFTVLSDVLTEREKDV 314
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ LRYGL ++P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 315 ISLRYGLATNQPYTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 367
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 176/289 (60%), Gaps = 2/289 (0%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR RL E E+++ + + +LE + E E G + WA + ++ L
Sbjct: 138 GRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNMPMARFRRRLM 197
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 198 LARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 257
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ ++
Sbjct: 258 ATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMT 317
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
+ ++R ++ ++ S++ IG +++ +F S ++P+ V + +++D+ +L +
Sbjct: 318 IEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDS-ENPELDVAKTLLREDLEGVLAT 376
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
L RER VL LRYGL+D R K+LEEIG++F V++E IR++E KA+ KLR
Sbjct: 377 LSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 425
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 178/290 (61%), Gaps = 5/290 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESG----KAASLNCWAQAAGVSERVLKQHL 290
RL A E E+++ + + LE+ + L E G + S + WA + ++ L
Sbjct: 111 RLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAVKVDMPLPRFRRRL 170
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFST
Sbjct: 171 YEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 230
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +
Sbjct: 231 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEM 290
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILE 470
++ ++R ++ ++ S++ IG +++ +F + ++P + V + +++D+ +L
Sbjct: 291 TIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPDDQVAKNLLREDLENVLG 349
Query: 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 350 TLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 399
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 180/288 (62%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + LE++K L + +L WA+AA ++++ LK+ ++
Sbjct: 20 RVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAKITQKELKKRMSI 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L +G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKNGRAATIPELAEELDLTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + +E D +P + +K+D+ R++ L
Sbjct: 200 KQVRDYLEKSRQPLSLDLRVGDNNDTELIELLEDHGT-TPDDFATSAALKRDLHRMISDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++++VL LR+GLND +P +L +IG+ +S+E +R++E++A++KLR
Sbjct: 259 TAQQQEVLTLRFGLNDGQPHTLAKIGEHLSISRERVRQIEREALSKLR 306
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 180/300 (60%), Gaps = 5/300 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L +K TL +E G+ SL WA AA + E L++ ++
Sbjct: 20 RVPLLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAANIDELQLQKTISA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y I DL+Q G +G+ +G E+FD ++GY+FSTY
Sbjct: 80 GENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA+++L G+ E+A LS
Sbjct: 140 YWWIRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLAQQFGRAATINELAAELELSS 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D + SP+E V ++ D+ R++ L
Sbjct: 200 KQVREYLERARQPLSLDLRVGDNQDTELGDLLEDPGI-SPEEYVTNSSLQVDLERMMSEL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+++QVL LR+GL D +P +L +IG L ++S+E +R++E++A+ KLR + D+ +L
Sbjct: 259 TPQQQQVLTLRFGLKDTQPLTLAKIGDLLNISRERVRQIEREAIAKLRKRKA--DIGEYL 316
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 172/298 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P E+A + G+S
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 424
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++ R S+ Q I + + E PD +++P V +Q M+ V +L L
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLS 484
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+ER+++ LR+G++ + +SL EIG+++ +SKE +R+LE +A+ +L+ + L +
Sbjct: 485 PKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 182/298 (61%), Gaps = 7/298 (2%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESG-----KAASLNCWAQAAGVS 282
L GR RL A E E+++ + + LER + + + G + WA+ +S
Sbjct: 95 LQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWAEEVKMS 154
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
++ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH
Sbjct: 155 LPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 214
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P +
Sbjct: 215 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPTEE 274
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
EIA +++ ++R ++ ++ S++ IG +++ +F ++P+E V + ++
Sbjct: 275 EIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESEG-ETPEERVAKVLLR 333
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+D+ +LE+L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 334 EDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 391
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 182/295 (61%), Gaps = 3/295 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ ++L+ ++ L + + +L WA+AA + L + +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIAD 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEFAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSASELASELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP+E VM+ + D+ R++E L
Sbjct: 200 KQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSYDLERLMEQL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
++R+V+ LR+GL D + +L +IG++ ++S+E +R++E++A+TKLR S+ D
Sbjct: 259 TPQQREVIKLRFGLMDGQALTLAKIGEILNISRERVRQIEREALTKLRKSKASMD 313
>gi|219847152|ref|YP_002461585.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219541411|gb|ACL23149.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 398
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 170/297 (57%), Gaps = 14/297 (4%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E ++++ ++ ER TL +S +AA L R+ +Q G
Sbjct: 113 LLTAEQEKQLAQMIERGQAAERKLATLPPDSPEAAKLR----------RIKEQ----GDE 158
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+++ + LV+ +A+ YR G+P DL+Q G++G+L+ E+FDHT+GYKFSTY +W
Sbjct: 159 ARQKMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWW 218
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I++++S+ +A +R +++P L +++IQ AR+ LT S G+ P D E+A + G+S ++
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + S+ +G+ ++ +F PD + +++ + L+ L R
Sbjct: 279 RELRRTAQDPVSLATPVGEEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSER 338
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL LRYGL D +P++LEE+GK F V++E +R++E KA+ KLR + L +L
Sbjct: 339 ERRVLELRYGLADGQPRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRLGKLLKDYL 395
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 172/298 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 185 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 244
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 245 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 304
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P E+A + G+S
Sbjct: 305 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 364
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++ R S+ Q I + + E PD +++P V +Q M+ V +L L
Sbjct: 365 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLS 424
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+ER+++ LR+G++ + +SL EIG+++ +SKE +R+LE +A+ +L+ + L +
Sbjct: 425 PKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 482
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 184/298 (61%), Gaps = 7/298 (2%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESG-----KAASLNCWAQAAGVS 282
L GR RL A E E+++ + + LER + + + G + WA+ +S
Sbjct: 94 LQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLWAEEVKMS 153
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
++ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH
Sbjct: 154 LPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 213
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P +
Sbjct: 214 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQELGRKPTEE 273
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
EIA +++ ++R ++ ++ S++ IG +++ +F + ++P++ V + ++
Sbjct: 274 EIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDRVAKVLLR 332
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+D+ +LE+L +RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 333 EDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 390
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 176/286 (61%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L WA A + ++ L G
Sbjct: 79 RLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDMPLPAFRRRLHLGR 138
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 139 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 198
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 199 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEK 258
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ +L +L
Sbjct: 259 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLLREDLEGVLSTLSP 317
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 318 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 363
>gi|402836975|ref|ZP_10885506.1| RNA polymerase sigma factor RpoD [Mogibacterium sp. CM50]
gi|402269991|gb|EJU19260.1| RNA polymerase sigma factor RpoD [Mogibacterium sp. CM50]
Length = 383
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 162/270 (60%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L G ER L + G +++L +S LV+ +A+ Y G+ F
Sbjct: 119 KEIGKVPLL------TGEQERELAIRMEQGDEDAKKKLCESNLRLVVSIAKRYLNRGLSF 172
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ ++FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 173 LDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVETIN 232
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + + L G+ P EIAK G+++ ++R + + S++ IG+ ++ +
Sbjct: 233 KLIRISRQLLQELGREPTSEEIAKEMGITVEKVREIKKISQDPVSLETPIGEEEDSHLGD 292
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F PD V +P E +K+ + +L++L RE++VL+LR+GL D RP++LEE+GK F+
Sbjct: 293 FIPDDDVPAPVEAAAYSMLKEQLMEVLDTLSEREKKVLMLRFGLEDGRPRTLEEVGKEFN 352
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KLR + L +L
Sbjct: 353 VTRERIRQIEAKALRKLRHPSRSKKLRDYL 382
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 174/295 (58%), Gaps = 9/295 (3%)
Query: 235 RLTIARNEAEMSKGVQVVA---------NLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
+L A E +S+ +QV LE+++ L+++ G+ + + W+ A G+++ +
Sbjct: 271 KLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVGMNQTL 330
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ + G +++L+ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD G
Sbjct: 331 FELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSLGLIRGAEKFDPEMG 390
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+++++ + +R I++P + IS+I K+R + G+ D E+A
Sbjct: 391 FKFSTYATWWIRQAVTRSITDQSRIIRLPVHIYEVISRINKSRMMIAEDQGRQARDEEVA 450
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
G+S+ ++ + R+ S+DQ IG + E D+ S + + + +K+D+
Sbjct: 451 TAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNSADDFLTNEVLKQDI 510
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L ER+VL LR+GL+D + +L++IG F V++E IR++E +A+ KLR
Sbjct: 511 DGVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQIEVRALRKLR 565
>gi|163849112|ref|YP_001637156.1| RNA polymerase sigma factor RpoD [Chloroflexus aurantiacus J-10-fl]
gi|222527085|ref|YP_002571556.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163670401|gb|ABY36767.1| RNA polymerase sigma factor RpoD [Chloroflexus aurantiacus J-10-fl]
gi|222450964|gb|ACM55230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 398
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 168/297 (56%), Gaps = 14/297 (4%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E +++ ++ ER TL +S +AA L KQ A G
Sbjct: 113 LLTAEQEKRLAQLIEQGQEAERKLATLPPDSPEAARL--------------KQLKAKGEE 158
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+++ + LV+ +A+ YR G+P DL+Q G++G+L+ E+FD+T+GYKFSTY +W
Sbjct: 159 ARQQMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDYTKGYKFSTYATWW 218
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I++++S+ +A +R +++P L +++IQ AR+ LT S G+ P D E+A + G+S ++
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + S+ +G+ ++ +F PD + +++ + L+ L R
Sbjct: 279 RELRRTAQDPVSLATPVGEEADSTLADFIPDPHALDADDAAASGMLRQQITAALDQLSER 338
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL LRYGL D +P++LEE+GK F V++E +R++E KA+ KLR + L +L
Sbjct: 339 ERRVLELRYGLVDGQPRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRLGKLLKDYL 395
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 176/292 (60%), Gaps = 1/292 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + E I+ L+ E + + A G+SER L+ L G + ++I
Sbjct: 92 EVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRVAKRKMI 151
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 152 RSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKGYKFSTYAYWWIRQAIT 211
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P ++E+A++ +S +R +
Sbjct: 212 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLQRNPSEVELAQFLEISAEHLRQLLQL 271
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D +SP++ + M+++++ +L + L RE+ V+
Sbjct: 272 RRKSLSLNHRVGKEEDTELVDLLEDEDSQSPEQQMSETMMRQEIWDVLGDVLTPREKDVI 331
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + + L +L
Sbjct: 332 SLRYGLITSEPCTLEEVGSIFNLSRERVRQIQSKAMRKLRRPQIAKRLKGWL 383
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 174/298 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P ++A + G+S
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCIQDGNYRPSKEQLASHVGVSTE 424
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++ R S+ Q I + + E PD +++P V +Q M+ V +L L
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDSGIETPSMSVGKQLMRNHVRNLLNVLS 484
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+E++++ LR+G++ + +SL EIG+++ +SKE +R+LE +A+ +L+ + + L+ +
Sbjct: 485 PKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSSHGLNAY 542
>gi|1519642|gb|AAB07554.1| SigD [Chloroflexus aurantiacus J-10-fl]
Length = 398
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 167/297 (56%), Gaps = 14/297 (4%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E +++ ++ ER TL +S +AA L KQ A G
Sbjct: 113 LLTAEQEKRLAQLIEQGQEAERKLATLPPDSPEAARL--------------KQLKAKGEE 158
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R E+ + LV+ +A+ YR G+P DL+Q G++G+L+ E+FD+T+GYKFSTY +W
Sbjct: 159 ARHEMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDYTKGYKFSTYATWW 218
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I++++S+ +A +R +++P L +++IQ AR+ LT S G+ P D E+A + G+S ++
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S+ +G+ N+ +F PD + +++ + L+ L R
Sbjct: 279 ATVRRTAQDPVSLATPVGEEANSTLADFIPDPHALDADDAAASGIVRQQITAALDQLSER 338
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL LRYGL D +P++LEE+GK F V++E +R++E KA+ KLR + L +L
Sbjct: 339 ERRVLELRYGLVDGQPRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRLGKLLKDYL 395
>gi|157273328|gb|ABV27227.1| sigma 38 RpoS [Candidatus Chloracidobacterium thermophilum]
Length = 549
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 182/315 (57%), Gaps = 18/315 (5%)
Query: 222 IFSAERALNSRGRR--LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAA 279
I +A+ AL + RR + +A A++ + +V+A++E K LE SL +
Sbjct: 243 IENAQEALKDKRRRALIDVAEVRAQIEQAQKVIADIE--KRYLEPARRIKDSLREIFTST 300
Query: 280 GVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNY--RGLGIPFSDLLQAGNVGVLQGA 337
+E+ R E+I++ LV+ +A+NY R G+ FSDL+Q GN+G+++
Sbjct: 301 EEAEK-----------ARREMIEANLRLVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAV 349
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
E+FD+ RGYKFSTY +WIR+++++ +A R I++P + I+KI + + + G+
Sbjct: 350 EKFDYRRGYKFSTYATWWIRQAVTRAIADQGRTIRVPVHMVETINKIVRTARLMVQELGR 409
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVM 457
P E+A+ T L +A++R A + + S++ IGD + F DR+ +P E+++
Sbjct: 410 EPTHEELAQRTDLPVAKVRQALKIAQEPISLETPIGDDGESNLGSFIEDRNSLNPAEMIV 469
Query: 458 RQHMKKDVFRILESLDSRERQVLVLRYGLN-DHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516
+ +++ +L +L RE Q+L +R+GL+ D + ++LEE+G+ FHV++E IR++E KA+
Sbjct: 470 GKGLREATLEVLSTLTPREEQILKMRFGLDGDGQERTLEEVGRYFHVTRERIRQIEAKAL 529
Query: 517 TKLRDSETCRDLSHF 531
KLR R L F
Sbjct: 530 RKLRHPSRSRKLKTF 544
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 169/287 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ AG++ R+L+ L G
Sbjct: 269 KQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSG 328
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ +V+ +A++Y+G G+ DLLQ G++G+++ E+F+ G +F Y
Sbjct: 329 NRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAF 388
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I K V RH+R I++P K+ + K+ +A+K +P E+A+ G+++
Sbjct: 389 WWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVE 448
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
+I RI S+ Q + N + E D +V++ V +Q M++ V +L L
Sbjct: 449 KIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLH 508
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ER+++ LRYG D KSL EIG +F +SKE +R+LE +A+ KL+
Sbjct: 509 PKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLK 555
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 189/318 (59%), Gaps = 8/318 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + NL K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQTMMNLLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK S+ WA+ + E+ L++ L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 AQRVGKEPSIQEWAKEVNIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
KI+K ++ L+ S G+ EIA+ + ++IR R S+D ++GD + + E
Sbjct: 179 KIKKTQRELSQSLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSE 238
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
D+ V SP + ++ +++D+ ++ L ++R VL LR+GL D + SL +IGK +
Sbjct: 239 LLEDQGV-SPDIYITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLN 297
Query: 503 VSKEWIRKLEKKAMTKLR 520
+S+E +R+LE +A+ +LR
Sbjct: 298 ISRERVRQLEHQALAQLR 315
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 176/289 (60%), Gaps = 4/289 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESG---KAASLNCWAQAAGVSERVLKQHLA 291
RL A E E+++ + + LE + L ++ + +L WA + K L
Sbjct: 93 RLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVEMDMPLDKFKNRLH 152
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 153 SGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 212
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA ++
Sbjct: 213 ATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPSEEEIATRMEMT 272
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
+ ++R ++ ++ S++ IG +++ +F + ++P + V + +++D+ +L +
Sbjct: 273 IEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPDDQVAKNLLREDLESVLGT 331
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 332 LSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 380
>gi|169334166|ref|ZP_02861359.1| hypothetical protein ANASTE_00560 [Anaerofustis stercorihominis DSM
17244]
gi|169258883|gb|EDS72849.1| RNA polymerase sigma factor RpoD [Anaerofustis stercorihominis DSM
17244]
Length = 403
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++L ++ LV+ +A+ Y G+ F DL+Q GN+G+L+ E+FD+T+G+KFSTY +W
Sbjct: 167 ARKKLCEANLRLVVSIAKRYVNRGMSFLDLIQEGNLGLLKAVEKFDYTKGFKFSTYATWW 226
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+++ ++ L G+ P EIAK GL ++
Sbjct: 227 IRQAITRAIADQARTIRIPVHMVETINKLKRVQRMLIQDLGRDPNSHEIAKEMGLPEEKV 286
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD +P+E ++ +F +L++L R
Sbjct: 287 RDIMKISQDPVSLETPIGEEEDSHLGDFIPDDDAVAPEEAASYMLLRTQLFEVLKTLTDR 346
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL+LR+GL D RP++LEE+G +F V++E IR++E KA+ KLR + L FL
Sbjct: 347 EAKVLILRFGLEDGRPRTLEEVGDIFCVTRERIRQIEAKALRKLRHPTRSKKLRDFL 403
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 166/287 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E E+ +Q + NLE +K LE + G+ +L WAQA G+S VLK L G
Sbjct: 233 KQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSG 292
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + +V+ +A+ Y+ G+ DLLQ G VG+++ E+F G +F+TY
Sbjct: 293 NRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAY 352
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I+K + +H+R I++P + + K+ +A+++ P EIA+ G+++
Sbjct: 353 WWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAID 412
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++ R S+ Q + N + E D ++ P V +Q M+K + +L L
Sbjct: 413 KLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILS 472
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ER+++ LR+G+ D + KSL EIG +F +SKE +R+LE +A+ KL+
Sbjct: 473 LKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLK 519
>gi|289548873|ref|YP_003473861.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermocrinis albus
DSM 14484]
gi|289182490|gb|ADC89734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermocrinis
albus DSM 14484]
Length = 568
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 149/236 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ ++K LV+ +A+ Y G+ F DL+Q GN+G+++ +++D+ +GYKFSTY +W
Sbjct: 331 AKQVMVKCNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWW 390
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+ I KA K LT G+ P EIAKY G+ + +
Sbjct: 391 IRQAITRAIADQARTIRIPVHMIETINDITKAHKKLTQELGREPTAEEIAKYLGIPVDKA 450
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + S++ IGD +A +F D+SV SP+E V R+ +++ + ++L +L +
Sbjct: 451 RKVMRMAQEPISLETPIGDDEDAHLKDFIEDKSVPSPEEQVTRKLLREQLIKVLSTLGEK 510
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
ER++L+ RYGL D +LE+IG++F+V++E IR++E KA+ KLR + L F
Sbjct: 511 EREILMYRYGLVDGTEYTLEQIGRMFNVTRERIRQIETKAIRKLRHPARSKYLKDF 566
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 178/293 (60%), Gaps = 3/293 (1%)
Query: 235 RLTIARNEAEMSKGVQVVAN--LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L ++ +L + G+ SL WA AA + L +A
Sbjct: 34 RVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPSAAELAQELDLTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP+E VM+ + D+ R++E L
Sbjct: 214 KQVREYLERARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSYDLERLMEEL 272
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
++++V+ LR+GL D + +L +IG + ++S+E +R++E++A+TKLR S+
Sbjct: 273 TPQQKEVIKLRFGLLDGQALTLAKIGDILNISRERVRQIEREALTKLRKSKAS 325
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 175/288 (60%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ++A+L +T LE G+ SL WA A +S L + +
Sbjct: 20 RVPLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSPGELNEIIQG 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ S G+ E+A L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATINELAVELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A++R E R S+D ++GD + + E D S+ SP+E + ++ D+ R++ L
Sbjct: 200 AQVREYLERARQPLSLDVRVGDNQDTELGELLEDPSL-SPEEFTSQSALRADLDRLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++RQV+ LR+GL D +P +L ++G L ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQRQVIALRFGLEDGQPLTLAKVGDLLNISRERVRQIEREALGKLR 306
>gi|441518658|ref|ZP_21000373.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454472|dbj|GAC58334.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 322
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 82 GEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A +R I++P L +++KI + R+ L G+ D E+A TG+
Sbjct: 142 TWWIRQAISRGMADQSRTIRLPVHLVEQVNKISRIRRELHQQLGREATDEELASETGIPA 201
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+I + R S+D +G+ A +F D S + +V+ + D+ +L +L
Sbjct: 202 AKIADLMDHSRDTVSLDMPVGNDEEAPLGDFIEDSEAVSAETVVISHLLHSDIRTVLATL 261
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RERQV+ LR+GL D +P++L++IG+ F +S+E +R++E++ M KLR+ + L +
Sbjct: 262 DDRERQVITLRFGLEDGQPRTLDQIGRSFGLSRERVRQIEREVMGKLREGDRAEKLRAY 320
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 178/290 (61%), Gaps = 3/290 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ ++ L +SG+ S+ WA+AA ++ L + +A
Sbjct: 34 RVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP++ VM+ + D+ ++E L
Sbjct: 214 KQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEDFVMQSSLSNDLEVLMEQL 272
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
++++V+ LR+GL D + +L IG++ ++S+E +R++E++A+TKLR S
Sbjct: 273 TPQQKEVITLRFGLIDGQALTLARIGEILNISRERVRQIEREALTKLRKS 322
>gi|406980685|gb|EKE02255.1| hypothetical protein ACD_20C00407G0008 [uncultured bacterium]
Length = 364
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 151/240 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ AE+FDH RGYKFSTY
Sbjct: 123 GQIAKRKLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIRAAEKFDHERGYKFSTYA 182
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K++K + L + P + EIA+ +++
Sbjct: 183 TWWIRQAITRAIADQARTIRIPVHMVETINKLKKITRKLAQDLSRKPTEEEIAEAMAITI 242
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R + + S++ IG +++ +F D+ +P V + +++D+ +L SL
Sbjct: 243 NKLREIIKVAQEPLSLETPIGKEEDSRLGDFIEDKEADAPVMTVAHELLREDLAEVLSSL 302
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RER VL LR+G++D R ++LEE+G+LF V++E IR++E KA+ KLR R L ++
Sbjct: 303 SPRERDVLRLRFGMDDGRQRTLEEVGQLFGVTRERIRQIEAKALRKLRHPNRSRRLKEYI 362
>gi|261367093|ref|ZP_05979976.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
gi|282571217|gb|EFB76752.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
Length = 364
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 148/240 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY
Sbjct: 124 GEKAKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYA 183
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K++K L + +G P EIA+ +S+
Sbjct: 184 TWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSV 243
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R + S++ IG+ ++ +F PD P E + +K+ + +L++L
Sbjct: 244 DKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQTLLKEQLADVLKTL 303
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE +VL LR+GL D RP++LEE+GK F+V++E IR++E KA+ KLR + L FL
Sbjct: 304 TPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDFL 363
>gi|350566296|ref|ZP_08934981.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
indolicus ATCC 29427]
gi|348662922|gb|EGY79550.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
indolicus ATCC 29427]
Length = 370
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 160/270 (59%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGW-YCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L G E ++ + + G ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 106 KEIGKIPLLT------GEEEVLIAKRMEIGENLAKKELAEANLRLVVSIAKRYVGRGMSF 159
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 160 LDLIQEGNLGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 219
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + ++ L G+ P EIA+ L + ++R + + S++ IG+ ++ +
Sbjct: 220 KLVRVQRQLVQELGRDPSPEEIAQEMSLDVEKVREIQKIAQEPVSLETPIGEEEDSHLGD 279
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F PD + SP + +K+ + +LE+L RE++VL LR+GL D R ++LEE+GK F
Sbjct: 280 FIPDEEILSPSDAATFTLLKEQLETVLETLTEREKKVLTLRFGLEDGRARTLEEVGKEFD 339
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KLR + L FL
Sbjct: 340 VTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 168/287 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S LK + G
Sbjct: 244 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRG 303
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 304 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 363
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P ++A + G+S
Sbjct: 364 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSTE 423
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++ R S+ Q I + + E PD +++P V +Q M+ V +L L
Sbjct: 424 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQMMRNHVRNLLNVLS 483
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ER+++ LR+G++ + +SL EIG+++ +SKE +R+LE +A+ +L+
Sbjct: 484 PKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLK 530
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 151/239 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L + G+ P D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQTLGREPTDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVIAELLHTDIRHVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHGERADRLRSY 317
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 177/295 (60%), Gaps = 3/295 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L ++ L + G+ +L WA A + L + +A
Sbjct: 51 RVPLLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLETTALNEAIAD 110
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 111 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 170
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 171 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPTAAELAQELELTP 230
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP+E VM+ + D+ R++ L
Sbjct: 231 KQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSYDLERLIAEL 289
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
++++V+ LR+GL D + +L +IG++ ++S+E +R++E++A+TKLR S+ D
Sbjct: 290 TPQQKEVITLRFGLIDGQALTLAKIGEILNISRERVRQIEREALTKLRKSKANMD 344
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 189/322 (58%), Gaps = 16/322 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + ++PT FSA+ L+ GR + + +E E+ G QV +++ T LEK
Sbjct: 1 MPTAKVNPKTQKPT-FSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QKMMTLLEK 54
Query: 265 ------ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
E GK +L WA +SE L + + G + ++I++ LV+ +A+ Y+
Sbjct: 55 KDQLAIELGKEPNLTEWANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLN 378
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 174
Query: 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNA 438
+++KI+K ++ L+ G+ EIAK L A+IR R S+D ++GD +
Sbjct: 175 EKLNKIKKTQRELSQQLGRSATPAEIAKALDLEPAQIREFLSMSRQPISLDVRVGDNQDT 234
Query: 439 KYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIG 498
+ E D + SP + ++ M++D+ +L L ++R+VL LR+GL D + SL +IG
Sbjct: 235 ELSELLEDEGI-SPDNYITQELMRQDLHDLLAELTPQQREVLSLRFGLQDGKELSLAKIG 293
Query: 499 KLFHVSKEWIRKLEKKAMTKLR 520
+ ++S+E +R+LE +A+++LR
Sbjct: 294 QRMNISRERVRQLEHQALSQLR 315
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 166/287 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E+E+ VQ + +LE +K + + G+ +L WA A G+S V++ L G
Sbjct: 246 KQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSG 305
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + +V+ +A+ Y+G G+ DLLQ G++G+++ E+F G +F+TY
Sbjct: 306 NRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAY 365
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+++ K + +H+R I++P + + K+ +A+++ P E+AK G++
Sbjct: 366 WWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTV 425
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
+ R+ S+ Q + + E D V+ P+ V +Q M+K V +L L+
Sbjct: 426 RLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILN 485
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER+++ LRYG+ D + KSL EIG +F +SKE +R+LE +A+ KL+
Sbjct: 486 PRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLK 532
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 176/293 (60%), Gaps = 2/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCREEL 300
E +++ V+ + + E + L +E G++ S WA ++ R L L G + ++
Sbjct: 80 EIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGRVAKRKM 139
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 140 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 199
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + P + E+A+ +S ++ +
Sbjct: 200 TRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQKLQRNPSETELAQELDISADQLHHLLQ 259
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQV 479
R S++ ++G + + ++ D ++ P+E + M+++++ +L + L RE++V
Sbjct: 260 LRRQSLSLNHRVGKGEDTELVDLLEDDGLQLPEERMSEAMMRQELWDVLGDVLTDREKEV 319
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ LRYGL+ +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 320 IALRYGLSSEQPHTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARKLKSWL 372
>gi|239626154|ref|ZP_04669185.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|355682437|ref|ZP_09062447.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
gi|239520384|gb|EEQ60250.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
gi|354811017|gb|EHE95653.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
Length = 381
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 150/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 YAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ ++ +
Sbjct: 204 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDK 263
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 264 VMEIMQIAREPASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDALLGDLKE 323
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 324 RERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 381
>gi|418053337|ref|ZP_12691407.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353178512|gb|EHB44091.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 319
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 152/239 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + S G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQSLGREATDDELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVIAELLHTDIRHVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M+KLR+ + L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGDRADRLRSY 317
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 168/294 (57%), Gaps = 1/294 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
+ E E++K +Q + E++ L + G+ + + A AAG +E L L +
Sbjct: 88 KEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRTAKRR 147
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR+
Sbjct: 148 MISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQG 207
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A R I++P + +I+K+++ + L S + P D EIA+ +SL ++R+
Sbjct: 208 ITRTIANQGRTIRLPVHVVEQINKLRRVYRDLRRSLNRIPNDTEIAQELEISLPQLRNLQ 267
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES-LDSRERQ 478
+ R S++ ++G N + L+F D +P+ + M++D+ +L L +RE+
Sbjct: 268 QIRRKTLSLNHRLGTDENTELLDFLEDNENSTPEAQMNDMMMRQDILEVLNHVLSNREQD 327
Query: 479 VLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V+ LRYGL P +L+E+ ++ ++S+E +R+++ KAM KLR + L +L
Sbjct: 328 VISLRYGLITGEPHTLDEVSRMINLSRERVRQIQAKAMRKLRRPQVAERLKGWL 381
>gi|338731696|ref|YP_004661088.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermotoga
thermarum DSM 5069]
gi|335366047|gb|AEH51992.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
thermarum DSM 5069]
Length = 394
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 151/239 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++LI+S LV+ +A+ Y G G+PF DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 150 AKKKLIQSNLRLVVSIAKKYMGRGLPFLDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 209
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + +HG+ P E+AK + +I
Sbjct: 210 IRQAITRAIADQARTIRVPVHMVETINKLNRIIREYQQTHGEPPTVEELAKIMDKPVEKI 269
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + + S++ +G+ ++ +F D S+ SPK+ MR M++++ ++L +L+ R
Sbjct: 270 EEIMQAAKEIISLEAPVGEDEDSTVGDFIADESIPSPKKEAMRMLMREELEKVLRTLNPR 329
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
E VL +RYGL D + K+LEE+G+ F+V++E IR++E KA+ KLR + L + L
Sbjct: 330 EAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKAIISL 388
>gi|402309575|ref|ZP_10828567.1| RNA polymerase sigma factor RpoD [Eubacterium sp. AS15]
gi|400372231|gb|EJP25179.1| RNA polymerase sigma factor RpoD [Eubacterium sp. AS15]
Length = 538
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 151/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y + +++++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +
Sbjct: 300 YAKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATW 359
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + + L G+ P EIA+ G+S +
Sbjct: 360 WIRQAITRAIADQARTIRIPVHMVETINKLIRINRQLVQELGRDPRPEEIAEQMGMSQDK 419
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
IR + + S++ IG+ ++ +F PD ++P E +++ + ++L +L
Sbjct: 420 IREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDAQAPSEAAAYSLLREQIEQVLCTLTD 479
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RER+VL LR+GL+D RP++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 480 RERRVLKLRFGLDDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDYL 537
>gi|306820486|ref|ZP_07454120.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304551472|gb|EFM39429.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 538
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 151/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y + +++++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +
Sbjct: 300 YAKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATW 359
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + + L G+ P EIA+ G+S +
Sbjct: 360 WIRQAITRAIADQARTIRIPVHMVETINKLIRINRQLVQELGRDPRPEEIAEQMGMSQDK 419
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
IR + + S++ IG+ ++ +F PD ++P E +++ + ++L +L
Sbjct: 420 IREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDAQAPSEAAAYSLLREQIEQVLCTLTD 479
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RER+VL LR+GL+D RP++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 480 RERRVLKLRFGLDDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDYL 537
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 153/249 (61%), Gaps = 4/249 (1%)
Query: 287 KQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
K+ LAF G R+ L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+
Sbjct: 80 KRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 139
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+G+KFSTY +WIR++I++ +A +R I++P L +++K+ + R+ L G+ D
Sbjct: 140 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDA 199
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
E+A +G+ +I + R S+D +G A +F D S + V+ M
Sbjct: 200 ELAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEEAPLGDFIEDAEAASAESAVISTLMH 259
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
DV +L +LD RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M+KLR+
Sbjct: 260 SDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNG 319
Query: 523 ETCRDLSHF 531
E L +
Sbjct: 320 ERADRLRAY 328
>gi|373494815|ref|ZP_09585412.1| RNA polymerase sigma factor rpoD [Eubacterium infirmum F0142]
gi|371967177|gb|EHO84649.1| RNA polymerase sigma factor rpoD [Eubacterium infirmum F0142]
Length = 396
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 151/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y + +L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ +GYKFSTY +
Sbjct: 158 YAKMKLCEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVDKFDYRKGYKFSTYATW 217
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + + L ++G+ P EIAK G+++ +
Sbjct: 218 WIRQAITRSIADQARTIRIPVHMVETINKLIRVSRQLLQTYGREPSPEEIAKEMGITVDK 277
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + + S++ IG+ ++ +F PD V +P E +K+ + +L++L
Sbjct: 278 VREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDDVPAPAEAAAFSMLKEQLVEVLDTLTD 337
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE++VL LR+GL+D R ++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 338 REQKVLKLRFGLDDGRSRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 395
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 155/241 (64%), Gaps = 8/241 (3%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 191 AKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 250
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A HAR I++P + I+++ K ++ LT G P E+A ++ ++
Sbjct: 251 IRQSVTRALADHARTIRVPVHMVETINRMSKMQRKLTLELGYEPSTKELATALDMTEEKV 310
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP----KEIVMRQHMKKDVFRILES 471
+ R S++ IG+ ++ +F D + +P + +++R+H+ DV +L+
Sbjct: 311 LEIMQIAREPASLETPIGEEDDSNLGDFVADNNTVTPEANIESVMLREHI--DV--LLQD 366
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
L RER+V++LR+GL D P++LEE+GK+F+V++E IR++E KA+ KLR+ + + F
Sbjct: 367 LKDREREVIILRFGLRDGHPRTLEEVGKIFNVTRERIRQIEAKALRKLRNPVRSKKIKDF 426
Query: 532 L 532
L
Sbjct: 427 L 427
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|150020921|ref|YP_001306275.1| RpoD family RNA polymerase sigma factor [Thermosipho melanesiensis
BI429]
gi|149793442|gb|ABR30890.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosipho
melanesiensis BI429]
Length = 370
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 148/233 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L++S LV+ +A+ Y G G+ F DL+Q GNVG+L+ E+FD +GYKFSTY +W
Sbjct: 128 AKQKLVESNLRLVVSIAKRYVGKGLSFLDLIQEGNVGLLKAVEKFDWKKGYKFSTYATWW 187
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+QK + HG E+AK G + ++
Sbjct: 188 IRQAITRAIADQARTIRVPVHMVETINKVQKIMRDYYQQHGTEIPIEELAKIIGKPVEKV 247
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ +G+ ++ +F D S+ SPK+ MR ++++V ++LE+L+ R
Sbjct: 248 EEILQAAKETTSLEAPVGEDEDSTVGDFVADESIASPKKEAMRMLIREEVEKVLETLNDR 307
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
E+ VL +RYGL D + K+LEE+G+ F+V++E IR++E KA+ KLR R L
Sbjct: 308 EKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSRYL 360
>gi|331003577|ref|ZP_08327074.1| hypothetical protein HMPREF0491_01936 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412418|gb|EGG91809.1| hypothetical protein HMPREF0491_01936 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 409
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 149/238 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 171 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 230
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A G++ +
Sbjct: 231 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANELGMTEEK 290
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 291 VMEIMQIAREPASLETPIGEEDDSNLGDFVADANVLTPEGNVESVMLREHIDTLLGDLKE 350
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F V++E IR++E KA+ KLR+ + + FL
Sbjct: 351 RERQVIVLRFGLEDGHPRTLEEVGKEFKVTRERIRQIEAKALRKLRNPVRSKRIRDFL 408
>gi|315924365|ref|ZP_07920587.1| DNA-directed RNA polymerase sigma subunit RpoD [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622244|gb|EFV02203.1| DNA-directed RNA polymerase sigma subunit RpoD [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 396
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 157/269 (58%), Gaps = 5/269 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + L + A + K+ A ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 132 KEIGRVSLLTADEEMA-----IAKRMAAGDEDAKKELAEANLRLVVSIAKRYVGRGMSFL 186
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 187 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 246
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + + L +G+ P EI K G S ++R + + S++ IG+ ++ +F
Sbjct: 247 LIRVSRQLLQEYGREPTPAEIGKEMGFSEDKVREIQKIAQDPVSLETPIGEEEDSHLGDF 306
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
PD +P E +K+ + +L +L RE +VL LR+GL+D R ++LEE+GK F V
Sbjct: 307 IPDDEAPAPSEAASYALLKEQLIDVLSTLTDREEKVLRLRFGLDDGRARTLEEVGKEFDV 366
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L +L
Sbjct: 367 TRERIRQIEAKALRKLRHPSRSKKLKDYL 395
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 164/280 (58%), Gaps = 1/280 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L K L G+ S WAQA+ +S LKQ +A G Y + ++
Sbjct: 28 QEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSSAELKQAIAEGEYAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A R I++P + +++KI+KA++ L+ G+ E+A+ L+ ++R E
Sbjct: 148 TRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATAAELAQELDLTPKQVRDYLE 207
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVL 480
R S+D ++GD + + E D SP+E ++ ++ D+ ++ L ++RQVL
Sbjct: 208 QARQPLSLDLRVGDNQDTELGELLEDTGT-SPEEFALQSSLRTDLESLMADLTPQQRQVL 266
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
LR+GL D + +L +IG ++S+E +R++E++A++KLR
Sbjct: 267 TLRFGLEDGQALTLAKIGDQLNISRERVRQIEREALSKLR 306
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 188/318 (59%), Gaps = 8/318 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQPT +SA+ L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTANVNTKTKQPT-YSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMSLLETKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK SL WA+ + E+ L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 AQSLGKEPSLQEWAKEVNLEEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
KI+K ++ L+ + G+ EIA+ + ++IR R S+D ++GD + + E
Sbjct: 179 KIKKTQRELSQTLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSE 238
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
D+ V SP + ++ +++D+ ++ L ++R VL LR+GL D + SL +IGK +
Sbjct: 239 LLEDQGV-SPDIYITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLN 297
Query: 503 VSKEWIRKLEKKAMTKLR 520
+S+E +R+LE +A+ +LR
Sbjct: 298 ISRERVRQLEHQALAQLR 315
>gi|365129836|ref|ZP_09341218.1| RNA polymerase sigma factor RpoD [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620810|gb|EHL72057.1| RNA polymerase sigma factor RpoD [Subdoligranulum sp. 4_3_54A2FAA]
Length = 362
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 146/240 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY
Sbjct: 122 GEKAKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYA 181
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K++K L + +G P EIA+ + +
Sbjct: 182 TWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHRNGHEPTADEIAEELDMPV 241
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R + S++ IG+ ++ +F PD P E +K+ + +L+SL
Sbjct: 242 DKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPDEDAPVPAEAASHTLLKEQLSGVLKSL 301
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE +VL LR+GL D RP++LEE+GK F+V++E IR++E KA+ KLR + L FL
Sbjct: 302 TPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDFL 361
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 169/274 (61%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L +K LEK + +L WAQ A + +K+ + G ++++I++
Sbjct: 47 KQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTPNEVKKIIHQGKRAKQKMIEANLR 106
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY +WIR++I++ +A+
Sbjct: 107 LVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQ 166
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+K ++ L+ G+ P EIA+ L A+IR R
Sbjct: 167 QARTIRLPIHITEKLNKIKKTQRELSQKLGRSPSPNEIAEALQLEPAQIREYFSIARQPI 226
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D K+GD + + E D V SP + ++ M++D+ ++L L +++QV+ LR+GL
Sbjct: 227 SLDVKVGDNQDTELSELLEDEGV-SPDNYITQELMRQDLQKLLGELTPQQQQVVRLRFGL 285
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D + SL +IG+ ++S+E +R+LE++A+ LR
Sbjct: 286 EDGKELSLAKIGQRMNISRERVRQLEQQALAHLR 319
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|407983270|ref|ZP_11163927.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
gi|407375163|gb|EKF24122.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
Length = 319
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 154/248 (62%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L++ + G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T
Sbjct: 70 RELEEVVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 129
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A +R I++P L +++K+ + R+ L + G+ D E
Sbjct: 130 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQTLGREATDEE 189
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A +G+ + +I E R S+D +G A +F D S + V+ + +
Sbjct: 190 LAAESGIPVDKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDAEAMSAENAVIAELLHT 249
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D+ +L +LD RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR E
Sbjct: 250 DIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHGE 309
Query: 524 TCRDLSHF 531
L +
Sbjct: 310 RADRLRSY 317
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 170/292 (58%), Gaps = 1/292 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + +E +K +L G+ L A A +SE ++Q+L G + +I
Sbjct: 100 EIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRAAKRRMI 159
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 160 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 219
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA + L + P ++E+A+ ++ ++R +
Sbjct: 220 RTIANDARTIRLPIHIVEKLNKLKKAHRDLRRELQRNPTEVELAQSLDMTPDQLRGLQQV 279
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + +E D + +SP+ + M+ ++ +L E L RE+ ++
Sbjct: 280 RRRSLSLNHRVGKGEDTELMELLEDGNTQSPESQISESMMRHEITSVLAEVLTEREKDII 339
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
LRYGL +LEE+G +F++S+E +R+++ KAM KLR + L +L
Sbjct: 340 TLRYGLATGETHTLEEVGSMFNLSRERVRQIQTKAMRKLRRPQVASRLRGWL 391
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 165/275 (60%), Gaps = 13/275 (4%)
Query: 248 GVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPL 307
GV V+ L+RI GK WA+ AGV+ L Q + G ++ +I++ L
Sbjct: 183 GVAEVSELKRIMA-----EGK----RRWAELAGVTLEALDQMITEGIQAKDHMIQANLRL 233
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y+ G+ DL+Q G +G+ + E+FD TRGY+FSTY +WIR+ I++ +A
Sbjct: 234 VVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWIRQGITRAIATQ 293
Query: 368 ARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
+R I++P + +++KI+KA++ ++ G+ +IA G++ ++R LR+ S
Sbjct: 294 SRTIRLPVHITEKLNKIKKAQRKISQEKGRTASIEDIAAELGMTAPQVREV--LLRVPRS 351
Query: 428 I--DQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYG 485
+ + K+G+ + + + D SP+E++MR+ + +D+ ++L L SRER V+++R+G
Sbjct: 352 VSLETKVGNEKDTELGDLLDDADSVSPEELLMREALHRDLQQLLADLTSRERDVILMRFG 411
Query: 486 LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
L D P SL EIG+ +S+E +R++E KA+ KLR
Sbjct: 412 LGDGHPYSLAEIGRALDLSRERVRQIEAKALQKLR 446
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 174/288 (60%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + NE E+ G QV A + + K+ LEK+ + SL W+++A +SE L + L
Sbjct: 30 RVPLLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKL 89
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD +GYKFSTY
Sbjct: 90 GQRAKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPMKGYKFSTYA 149
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L+ G+ P EIA L
Sbjct: 150 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRNPNPREIAAELELET 209
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++IR R S+D ++GD + + E D + SP + ++ +++D++ ++ L
Sbjct: 210 SQIREYLSIARQPISLDVRVGDNQDTELSELLEDDGI-SPDKYATQELLRQDLYNLMADL 268
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+R+V+ LR+GL D + SL +IG+ +S+E +R+LE +A+ +LR
Sbjct: 269 TPPQREVISLRFGLEDGKELSLAKIGQRMSLSRERVRQLEHQALAQLR 316
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 151/239 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRHVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|419718662|ref|ZP_14245972.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
gi|383305179|gb|EIC96554.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
Length = 389
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 167/281 (59%), Gaps = 2/281 (0%)
Query: 252 VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFL 311
+A + IK L KE GK L+ + +++++ A R+++ +S LV+ +
Sbjct: 110 IAIEDSIKMYL-KEIGKIPLLSV-DEEMNLAKKICDPDEAVRKEARKQMAESNLRLVVSI 167
Query: 312 ARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGI 371
A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +G+KFSTY +WIR++I++ +A AR I
Sbjct: 168 AKRYMGRGMQFLDLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQAITRSIADQARTI 227
Query: 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQK 431
+IP + I+++ K ++ L G+ P E+AK G+ ++++R S++
Sbjct: 228 RIPVHMVETINRLIKIQRKLVQEFGREPRPDEVAKVMGIPVSKVREIMSFALEPVSMETP 287
Query: 432 IGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRP 491
IGD ++ +F D + K P M + + +++SL RE++V++LR+GL D +P
Sbjct: 288 IGDEDDSHLGDFLQDSNAKVPVNFAMDVLLHDQLMEVIKSLTEREQKVILLRFGLEDGKP 347
Query: 492 KSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++LEE+GK+F +++E IR++E K++ KLR+ R L FL
Sbjct: 348 RTLEEVGKVFGITRERIRQIEAKSLRKLRNPSKVRRLKDFL 388
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 154/247 (62%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L++ + G RE L + LV+ +A+ Y G G+ DL+Q GNVG+++ E+F++T+G
Sbjct: 153 LRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAVEKFNYTKG 212
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ +A AR I+IP + I+++ + + LT +G+ P D E+A
Sbjct: 213 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGREPSDEELA 272
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+ L++ ++RS + S++ +G +++ +F PD +++P + Q +++ V
Sbjct: 273 QALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQLGDFLPDEKLEAPSDAASHQMLREQV 332
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
++L+ L RE++VL LR+GL D ++LEE+GK F V++E IR++E KA+ KLR
Sbjct: 333 AQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRFG 392
Query: 526 RDLSHFL 532
+ L +L
Sbjct: 393 KKLRDYL 399
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 167/288 (57%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ K VQ + L +K L KE G SL+ WA SE LK ++
Sbjct: 29 RVPLLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYVNQSENDLKHKIST 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ P EIAK L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D ++GD + + E D + SP+ ++ ++ D+ +L L
Sbjct: 209 AQIREYLNIARQPISLDVRVGDNQDTELQEMLEDHGL-SPEHYTTQEFLRHDLNNLLAEL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V++LR+GL D SL ++G ++S+E +R+LE +A+T LR
Sbjct: 268 TPQQREVVILRFGLEDGNEMSLAKVGDRLNISRERVRQLEHQALTHLR 315
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 170/288 (59%), Gaps = 3/288 (1%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
+ K VQ + +L I ++L + + WA A G+SE L + G + ++++
Sbjct: 12 LGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQAKHRMVEAN 71
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y + DL+Q G +G+ +G E+FD ++GY+FSTY +WIR++I++ +
Sbjct: 72 LRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAI 131
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
A +R I++P + +++KI+KA++ T HG+ P EIA+ TG ++ ++R + R
Sbjct: 132 AEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQVREYLDRSRQ 191
Query: 425 VGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRY 484
S+D K+GD + + + D ++P + +K D+ RI+ L +++QV+ LR+
Sbjct: 192 PLSLDLKVGDNQDTQLGDLLEDDG-QTPDDYATASSLKSDLKRIMADLTPQQQQVIALRF 250
Query: 485 GLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
GL D + +L +IG + +S+E +R++E++A+TKLR ++ D+ +L
Sbjct: 251 GLEDGKNMTLAKIGAMLDISRERVRQIEREALTKLRKRQS--DMREYL 296
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 179/293 (61%), Gaps = 2/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E +++ V+ + + E + L+++ G++ + WA G+ + + L L G + ++
Sbjct: 72 EIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGRVAKRKM 131
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 132 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 191
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + + P + E+A+ ++ ++ +
Sbjct: 192 TRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQTLQRNPTEAELAQELDITADQLHQLLQ 251
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQV 479
R S++ ++G + + ++ D ++ P+E + M+++++ +L + L RE++V
Sbjct: 252 LRRQSLSLNHRVGKGEDTELVDLLEDDGLQLPEERMSEAMMRQELWDVLGDVLTDREKEV 311
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ LRYGL+ +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 312 IALRYGLSSEQPHTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRLKSWL 364
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 174/298 (58%), Gaps = 1/298 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ VQ + L+ ++ L++E + + A A G+SE L+Q
Sbjct: 59 LLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +A R I++P + +++K++K + L S + P + E+A+ ++ ++
Sbjct: 179 IRQGITRTIANQGRTIRLPVHIVEQLNKLKKVYRDLRRSLQRNPTETELAREMQVTCEQL 238
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES-LDS 474
R + R S++ +IG +++ L+ D + +SP+ + M++D+ +L+S L
Sbjct: 239 RYLQQVRRQSLSLNHRIGSEESSELLDVLEDNATQSPEAQMNEMMMRQDILEVLDSILTE 298
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE++++ +RYGL P +LEE+ LF++S+E +R+++ KAM KLR + L +L
Sbjct: 299 REKEIVAMRYGLLTGEPYTLEEVSSLFNLSRERVRQIQNKAMRKLRRPQVTERLKGWL 356
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 155/251 (61%)
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
+ER LK + G + L+++ LV+ +A+ + G G+ F DL+Q GN+G+++ ++FD
Sbjct: 146 TERQLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQEGNMGLMKAVDKFD 205
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+ RGYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ LT G+ P
Sbjct: 206 YRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRQLTQELGRDPLP 265
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHM 461
EIAK ++ ++R + + S++ +G+ ++ +F PD SP E + +
Sbjct: 266 EEIAKKMDITPDKVREILKISQDPISLESPVGEEDDSNLGDFIPDSETISPAEFASNELL 325
Query: 462 KKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521
K+++ +LE+L RE +VL LR+GLND R ++LEE+GK F V++E IR++E KA+ KLR
Sbjct: 326 KQELNEVLETLTDREERVLRLRFGLNDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRH 385
Query: 522 SETCRDLSHFL 532
+ L F+
Sbjct: 386 PSRSKKLRDFM 396
>gi|217077377|ref|YP_002335095.1| RNA polymerase sigma factor RpoD [Thermosipho africanus TCF52B]
gi|217037232|gb|ACJ75754.1| RNA polymerase sigma factor RpoD [Thermosipho africanus TCF52B]
Length = 371
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 148/233 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L++S LV+ +A+ Y G G+ F DL+Q GNVG+L+ E+FD +GYKFSTY +W
Sbjct: 129 AKQKLVESNLRLVVSIAKRYVGKGLSFLDLIQEGNVGLLKAVEKFDWKKGYKFSTYATWW 188
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+QK + HG E+AK G + ++
Sbjct: 189 IRQAITRAIADQARTIRVPVHMVETINKVQKIMREYYQEHGTEIPIEELAKLIGKPVEKV 248
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ +G+ ++ +F D ++ SPK+ MR ++++V ++LE+L+ R
Sbjct: 249 EEILQAAKETTSLEAPVGEDDDSTVGDFIADETIASPKKEAMRMLIREEVDKVLETLNDR 308
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
E+ VL +RYGL D + K+LEE+G+ F+V++E IR++E KA+ KLR R L
Sbjct: 309 EKLVLKMRYGLIDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSRYL 361
>gi|357055293|ref|ZP_09116365.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
gi|355382932|gb|EHG30022.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
Length = 381
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 150/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 FAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ ++ +
Sbjct: 204 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDK 263
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 264 VMEIMQIAREPASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDALLGDLKE 323
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 324 RERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 381
>gi|293376344|ref|ZP_06622581.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325843397|ref|ZP_08167955.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645033|gb|EFF63106.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489319|gb|EGC91693.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 456
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 172/285 (60%), Gaps = 14/285 (4%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSE-------RVLKQHLAFGWYCREELIKSTRPL 307
LERI + +++G+A N + GV+E RV+++ G Y ++ L+++ L
Sbjct: 177 LERIDLLI-QDAGEANDGNEFL--IGVTELSDEEARRVIQE----GEYAKKRLVEANLRL 229
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ + G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 230 VVSIAKRHVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQ 289
Query: 368 ARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
AR I+IP + I+K+ + ++ L G+ P EI++ G++ ++R + + S
Sbjct: 290 ARTIRIPVHMVETINKLVRIQRQLVQELGREPLPEEISEKMGIAPEKVREILKISQEPVS 349
Query: 428 IDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLN 487
++ +G+ ++ +F PD SP E + +KK++ +LE+L RE +VL LR+GL
Sbjct: 350 LESPVGEEDDSHLGDFIPDADALSPSEFASNEMLKKELDDVLETLTDREERVLRLRFGLE 409
Query: 488 DHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+GK F V++E IR++E KA+ KLR R L F+
Sbjct: 410 DGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSRRLKDFM 454
>gi|383819225|ref|ZP_09974501.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
gi|383337196|gb|EID15577.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
Length = 319
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 150/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQQLGREATDEELAAESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G+ A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGNDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRAY 317
>gi|384455624|ref|YP_005668219.1| putative RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|346983967|dbj|BAK79643.1| putative RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-mouse-Yit]
Length = 350
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 150/247 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+KQ+ R++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G
Sbjct: 103 IKQNDTTSRIARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDHTKG 162
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+SI++ +A AR I+IP + I+K + + L G+ P EIA
Sbjct: 163 FKFSTYATWWIRQSITRAIADQARTIRIPVHMVETINKYTRVSRQLLQELGRDPLSEEIA 222
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
K + ++R + + S++ IG+ ++ +F PD +P E+ +K+ +
Sbjct: 223 KEMNMPENKVRDIRKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEVAAFTLLKEQL 282
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L++L +RE+ VL LR+GL+D R ++LEE+GK F V++E IR++E KA+ KLR
Sbjct: 283 MNVLDTLSAREKNVLKLRFGLDDGRARTLEEVGKEFKVTRERIRQIEAKALRKLRHPSRS 342
Query: 526 RDLSHFL 532
+ L +L
Sbjct: 343 KKLKDYL 349
>gi|160941160|ref|ZP_02088497.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
gi|158435721|gb|EDP13488.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
Length = 381
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 150/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 FAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ ++ +
Sbjct: 204 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDK 263
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 264 VMEIMQIAREPASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDALLGDLKE 323
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 324 RERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 381
>gi|315651467|ref|ZP_07904490.1| DNA-directed RNA polymerase sigma subunit RpoD [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486287|gb|EFU76646.1| DNA-directed RNA polymerase sigma subunit RpoD [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 389
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 167/281 (59%), Gaps = 2/281 (0%)
Query: 252 VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFL 311
+A + IK L KE GK L+ + +++++ A R+++ +S LV+ +
Sbjct: 110 IAIEDSIKMYL-KEIGKIPLLSV-DEEMNLAKKICDPDEAVRKEARKQMAESNLRLVVSI 167
Query: 312 ARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGI 371
A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +G+KFSTY +WIR++I++ +A AR I
Sbjct: 168 AKRYMGRGMQFLDLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQAITRSIADQARTI 227
Query: 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQK 431
+IP + I+++ K ++ L G+ P E+AK G+ ++++R S++
Sbjct: 228 RIPVHMVETINRLIKIQRKLVQEFGREPRPDEVAKVMGIPVSKVREIMSFALEPVSMETP 287
Query: 432 IGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRP 491
IGD ++ +F D + K P M + + +++SL RE++V++LR+GL D +P
Sbjct: 288 IGDEDDSHLGDFLQDSNAKIPVNFAMDVLLHDQLMEVIKSLTEREQKVILLRFGLEDGKP 347
Query: 492 KSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++LEE+GK+F +++E IR++E K++ KLR+ R L FL
Sbjct: 348 RTLEEVGKVFGITRERIRQIEAKSLRKLRNPSKVRRLKDFL 388
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 158/246 (64%), Gaps = 1/246 (0%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G++
Sbjct: 137 WAIKMGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLI 196
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 197 RAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQE 256
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKE 454
G+ P + EIA +++ ++R ++ ++ S++ IG +++ +F ++P +
Sbjct: 257 MGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESEG-ETPDD 315
Query: 455 IVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514
V + +++D+ +L +L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E K
Sbjct: 316 QVAKSLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAK 375
Query: 515 AMTKLR 520
A+ KLR
Sbjct: 376 ALRKLR 381
>gi|342732217|ref|YP_004771056.1| RNA polymerase sigma factor RpoD [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|417962552|ref|ZP_12604735.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-3]
gi|417965326|ref|ZP_12606875.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-4]
gi|417968344|ref|ZP_12609373.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-co]
gi|418016381|ref|ZP_12655946.1| RNA polymerase primary sigma factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372471|ref|ZP_12964563.1| RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342329672|dbj|BAK56314.1| RNA polymerase sigma factor RpoD [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506716|gb|EGX29010.1| RNA polymerase primary sigma factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|380336389|gb|EIA26406.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-3]
gi|380337947|gb|EIA26922.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-4]
gi|380339859|gb|EIA28527.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-co]
gi|380342140|gb|EIA30585.1| RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 357
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 150/247 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+KQ+ R++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G
Sbjct: 110 IKQNDTTSRIARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDHTKG 169
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+SI++ +A AR I+IP + I+K + + L G+ P EIA
Sbjct: 170 FKFSTYATWWIRQSITRAIADQARTIRIPVHMVETINKYTRVSRQLLQELGRDPLSEEIA 229
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
K + ++R + + S++ IG+ ++ +F PD +P E+ +K+ +
Sbjct: 230 KEMNMPENKVRDIRKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEVAAFTLLKEQL 289
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L++L +RE+ VL LR+GL+D R ++LEE+GK F V++E IR++E KA+ KLR
Sbjct: 290 MNVLDTLSAREKNVLKLRFGLDDGRARTLEEVGKEFKVTRERIRQIEAKALRKLRHPSRS 349
Query: 526 RDLSHFL 532
+ L +L
Sbjct: 350 KKLKDYL 356
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 171/287 (59%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L + E+++ +Q + LE +KT+L+ + G+ ++ WA+ AG++ R +K L G
Sbjct: 265 KQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCG 324
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ LV ++A++Y+G G+ DLLQ G+ G+++ ++F G +F++Y
Sbjct: 325 NRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFASYAY 384
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WI+++I K + H+R I++P K+ ++SK+ +A+K P E+A+ G+S
Sbjct: 385 WWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYKEEGNLNPTKEELARRVGISPD 444
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++ RI S+ +G + + E D +++SP V +Q M++ V +L L
Sbjct: 445 KVDRLLFVARIPISMQNTVGSETDTTFQEITADCAIESPNMSVAKQLMRRHVLNVLNILR 504
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ER+++ LR+G D KSL EIG++F +S+E +R+LE +A+ KL+
Sbjct: 505 PKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRALYKLK 551
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 162/275 (58%), Gaps = 1/275 (0%)
Query: 246 SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTR 305
K VQ + L K L K+ G+ SL W Q G++E LK+ + G ++++I++
Sbjct: 42 GKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETELKKTVLEGKRAKQKMIEANL 101
Query: 306 PLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVA 365
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A
Sbjct: 102 RLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIA 161
Query: 366 RHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIV 425
+ R I++P + +++KI+K ++ L G+ P EIAK L A+IR R
Sbjct: 162 QQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPIPSEIAKELDLEPAQIREYLNMARQP 221
Query: 426 GSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYG 485
S+D ++GD + + E D SP+ ++ +++D+ +L L ++RQVL LR+G
Sbjct: 222 VSLDVRVGDNQDTELQEMLEDDG-PSPEYYTTQEFLRQDLNNLLAELTPQQRQVLALRFG 280
Query: 486 LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
L+D SL ++G+ +S+E +R+LE +A+ LR
Sbjct: 281 LSDGNEMSLAKVGERLSLSRERVRQLEHQALAHLR 315
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 176/290 (60%), Gaps = 3/290 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ ++ L + G+ S+ WA+AA ++ L +A
Sbjct: 34 RVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP++ VM+ + D+ ++E L
Sbjct: 214 KQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEDFVMQSSLSNDLEVLMEQL 272
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
++++V+ LR+GL D + +L IG++ ++S+E +R++E++A+TKLR S
Sbjct: 273 TPQQKEVITLRFGLIDGQALTLARIGEILNISRERVRQIEREALTKLRKS 322
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 150/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQNLGREATDEELAEESGIPI 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 DKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAASAENTVIAELLHTDIRSVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR E L +
Sbjct: 259 DEREQQVVRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHGERADRLRSY 317
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 176/290 (60%), Gaps = 3/290 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + +L + G+ +L WA+A + L + +A
Sbjct: 34 RVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELAQELELTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP+E VM+ + D+ R++ L
Sbjct: 214 KQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSYDLDRLMGDL 272
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
++R+V+ LR+GL D + +L +IG++ ++S+E +R++E++A+TKLR S
Sbjct: 273 TPQQREVITLRFGLTDGQALTLAKIGEILNISRERVRQIEREALTKLRKS 322
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|222528719|ref|YP_002572601.1| RpoD subfamily RNA polymerase sigma-70 factor [Caldicellulosiruptor
bescii DSM 6725]
gi|222455566|gb|ACM59828.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor bescii DSM 6725]
Length = 417
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 191 LVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 250
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 251 QARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPV 310
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L+SL+ RE++VL LR+GL
Sbjct: 311 SLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGL 370
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+GK F+V++E IR++E KA+ KLR + L FL
Sbjct: 371 EDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
>gi|347755938|ref|YP_004863502.1| RNA polymerase sigma factor RpoD/sigma-70 family RNA polymerase
sigma factor [Candidatus Chloracidobacterium
thermophilum B]
gi|347588456|gb|AEP12986.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Candidatus
Chloracidobacterium thermophilum B]
Length = 558
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 180/316 (56%), Gaps = 18/316 (5%)
Query: 222 IFSAERALNSRGRRLTI--ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAA 279
I +A+ AL + RR I A A++ + +V+A++E K LE S SL +
Sbjct: 252 IENAQAALKDKQRRARIDEAETRAQIEQAQKVIADIE--KRYLEPASRIKGSLREIFSST 309
Query: 280 GVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNY--RGLGIPFSDLLQAGNVGVLQGA 337
+E+ R E+I++ LV+ +A+NY R G+ FSDL+Q GN+G+++
Sbjct: 310 EEAEK-----------ARREMIEANLRLVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAV 358
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
E+FD+ RGYKFSTY +WIR+++++ +A R I++P + I+KI + + + G+
Sbjct: 359 EKFDYRRGYKFSTYATWWIRQAVTRAIADQGRTIRVPVHMVETINKIVRTARLMVQELGR 418
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVM 457
P E+A+ T L + ++R A + + S++ IGD + F DR+ +P E+++
Sbjct: 419 EPTHEELAQRTDLPVVKVRQALKIAQEPISLETPIGDDGESNLGSFIEDRNSLNPAEMIV 478
Query: 458 RQHMKKDVFRILESLDSRERQVLVLRYGLN-DHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516
+ +++ +L +L RE Q+L +R+GL+ D + ++LEE+G+ F V++E IR++E KA+
Sbjct: 479 GKGLREATLEVLSTLTQREAQILKMRFGLDGDGQERTLEEVGRHFSVTRERIRQIEAKAL 538
Query: 517 TKLRDSETCRDLSHFL 532
KLR R L F
Sbjct: 539 RKLRHPSRSRKLKTFF 554
>gi|419759946|ref|ZP_14286231.1| RNA polymerase sigma factor RpoD [Thermosipho africanus H17ap60334]
gi|407514985|gb|EKF49771.1| RNA polymerase sigma factor RpoD [Thermosipho africanus H17ap60334]
Length = 371
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 148/233 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L++S LV+ +A+ Y G G+ F DL+Q GNVG+L+ E+FD +GYKFSTY +W
Sbjct: 129 AKQKLVESNLRLVVSIAKRYVGKGLSFLDLIQEGNVGLLKAVEKFDWKKGYKFSTYATWW 188
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+QK + HG E+AK G + ++
Sbjct: 189 IRQAITRAIADQARTIRVPVHMVETINKVQKIMREYYQEHGTEIPIEELAKLIGKPVEKV 248
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ +G+ ++ +F D ++ SPK+ MR ++++V ++LE+L+ R
Sbjct: 249 EEILQAAKETTSLEAPVGEDDDSTVGDFIADETIASPKKEAMRMLIREEVDKVLETLNDR 308
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
E+ VL +RYGL D + K+LEE+G+ F+V++E IR++E KA+ KLR R L
Sbjct: 309 EKLVLKMRYGLIDGKVKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSRYL 361
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 173/298 (58%), Gaps = 1/298 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ VQ + L+ ++ L++E + + A A G+SE L+Q
Sbjct: 59 LLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +A R I++P + +++K++K + L S + P + E+A+ +S +
Sbjct: 179 IRQGITRTIANQGRTIRLPVHIVEQLNKLKKVYRDLKRSLQRNPTETELAREMEVSCEHL 238
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES-LDS 474
R + R S++ +IG +++ L+ D + +SP+ + M++D+ +L+S L
Sbjct: 239 RYLQQVRRQSLSLNHRIGSEESSELLDVLEDNATQSPEAQMNEMMMRQDILEVLDSILTE 298
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE++++ +RYGL P +LEE+ LF++S+E +R+++ KAM KLR + L +L
Sbjct: 299 REKEIVAMRYGLLTGEPYTLEEVSSLFNLSRERVRQIQNKAMRKLRRPQVTERLKGWL 356
>gi|299144149|ref|ZP_07037229.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518634|gb|EFI42373.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 383
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 159/270 (58%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L G E + Q + G ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 119 KEIGKIPLL------TGDEEIDIAQRMEVGDEDAKQELAEANLRLVVSIAKRYVGRGMSF 172
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 173 LDLIQEGNLGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 232
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + ++ L G+ P EI K L + ++R + + S++ IG+ ++ +
Sbjct: 233 KLVRVQRQLVQELGRDPLPEEIGKEMNLEVEKVREIQKIAQEPVSLETPIGEEEDSHLGD 292
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F PD + SP + +K+ + +L++L RE++VL LR+GL+D R ++LEE+GK F
Sbjct: 293 FIPDDEILSPSDAATFTLLKEQLEDVLQTLTDREKKVLTLRFGLDDGRARTLEEVGKEFD 352
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KLR + L FL
Sbjct: 353 VTRERIRQIEAKALRKLRHPSRSKKLKDFL 382
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 151/239 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 149/231 (64%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGE 309
>gi|358068536|ref|ZP_09154998.1| hypothetical protein HMPREF9333_01879 [Johnsonella ignava ATCC
51276]
gi|356693353|gb|EHI55032.1| hypothetical protein HMPREF9333_01879 [Johnsonella ignava ATCC
51276]
Length = 427
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 156/250 (62%), Gaps = 8/250 (3%)
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
K+ A Y +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+
Sbjct: 182 KRKQAGDEYAKQKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGF 241
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
K STY +WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+AK
Sbjct: 242 KLSTYATWWIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLQLGYEPSVSELAK 301
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK----EIVMRQHMK 462
++ ++ + R S++ IG+ ++ +F D +V SP+ +++R+H++
Sbjct: 302 ALDMTDEKVMEIMQIAREPASLETPIGEEDDSNLGDFVADSNVVSPEGNVESVMLREHIE 361
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+L L RERQV+VLR+GL D P++LEE+G+ F V++E IR++E KA+ KLR+
Sbjct: 362 T----LLADLKERERQVIVLRFGLEDGHPRTLEEVGREFKVTRERIRQIEAKALRKLRNP 417
Query: 523 ETCRDLSHFL 532
+ + FL
Sbjct: 418 IRSKKIRDFL 427
>gi|312128161|ref|YP_003993035.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor hydrothermalis 108]
gi|312134621|ref|YP_004001959.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor owensensis OL]
gi|312792985|ref|YP_004025908.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|311774672|gb|ADQ04159.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor owensensis OL]
gi|311778180|gb|ADQ07666.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor hydrothermalis 108]
gi|312180125|gb|ADQ40295.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 417
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 191 LVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 250
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 251 QARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPV 310
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L+SL+ RE++VL LR+GL
Sbjct: 311 SLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGL 370
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+GK F+V++E IR++E KA+ KLR + L FL
Sbjct: 371 EDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 174/288 (60%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L +K++L E G + + WAQA + E+ L+Q +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACELEEQELQQAIAT 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
+ +++++ LV+ +A+ Y I DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 AELAKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA+++L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLSQKLGRAATVTELAEELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D + SP++ V + M+ D+ ++L L
Sbjct: 200 PQVREYLERARQPLSLDLRVGDHQDTELGDLLED-TGPSPEDFVTQSAMQMDLEKLLSDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R VL LR+GL D +P +L +IG +S+E +R++E++A+ KLR
Sbjct: 259 TQQQRDVLSLRFGLADGQPLTLAKIGDRLSISRERVRQIEREALAKLR 306
>gi|302871329|ref|YP_003839965.1| RpoD subfamily RNA polymerase sigma-70 subunit
[Caldicellulosiruptor obsidiansis OB47]
gi|302574188|gb|ADL41979.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor obsidiansis OB47]
Length = 417
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 191 LVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 250
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 251 QARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPV 310
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L+SL+ RE++VL LR+GL
Sbjct: 311 SLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGL 370
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+GK F+V++E IR++E KA+ KLR + L FL
Sbjct: 371 EDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
>gi|41408924|ref|NP_961760.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397283|gb|AAS05143.1| SigB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 332
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 92 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 152 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPI 211
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 212 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 271
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR+ E L +
Sbjct: 272 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 330
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 179/300 (59%), Gaps = 5/300 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV ++ L ++ L + G+ +L W++AA + + L +A
Sbjct: 20 RVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ + G+ P +E+A L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQNLGRAPSIVELATALELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D S+ SP+E V + D+ +++ L
Sbjct: 200 KQVREYLERARLPLSLDLRVGDNQDTELGELLEDTSL-SPEEFVTESCLSTDIEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++R+VL LR+GL D + +L +IG ++S+E +R++E++A+TKLR + DL +L
Sbjct: 259 TPQQREVLSLRFGLADGQAMTLAKIGDRLNISRERVRQIEREALTKLRKRKA--DLDQYL 316
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|344996804|ref|YP_004799147.1| RpoD subfamily RNA polymerase sigma-70 subunit
[Caldicellulosiruptor lactoaceticus 6A]
gi|343965023|gb|AEM74170.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor lactoaceticus 6A]
Length = 419
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 193 LVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 252
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 253 QARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPV 312
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L+SL+ RE++VL LR+GL
Sbjct: 313 SLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGL 372
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+GK F+V++E IR++E KA+ KLR + L FL
Sbjct: 373 EDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 418
>gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MCS]
gi|119868259|ref|YP_938211.1| RNA polymerase sigma factor SigB [Mycobacterium sp. KMS]
gi|126434752|ref|YP_001070443.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JLS]
gi|108769563|gb|ABG08285.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694348|gb|ABL91421.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
gi|126234552|gb|ABN97952.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 319
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 150/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPA 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 175/293 (59%), Gaps = 3/293 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ ++ +L + G+ +L WA+ + + L +A
Sbjct: 34 RVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIADLNDAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSVGELATELDLTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP+E VM+ + D+ R++E L
Sbjct: 214 KQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQTSLSSDLERVMEEL 272
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
++R+V+ LR+GL D + +L IG++ ++S+E +R++E++A+ KLR S+
Sbjct: 273 TPQQREVITLRFGLIDGQALTLARIGEILNISRERVRQIEREALNKLRKSKAA 325
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 167/287 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ G++ R+L L G
Sbjct: 272 KQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSG 331
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ +V+ +A++Y+G G+ DLLQ G++G+++ E+F+ G +F Y
Sbjct: 332 SRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAF 391
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I K V RH+R I++P K+ + K+ +A+K +P E+A+ G+++
Sbjct: 392 WWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVE 451
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
+I RI S+ Q + N + E D +V++ V +Q M++ V +L L
Sbjct: 452 KIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVSVEKQLMRQHVLNVLSILH 511
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ER+++ LRYG D KSL EIG +F +SKE +R+LE +A+ KL+
Sbjct: 512 PKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLK 558
>gi|433647324|ref|YP_007292326.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297101|gb|AGB22921.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 319
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 150/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPA 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|347542294|ref|YP_004856930.1| putative RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985329|dbj|BAK81004.1| putative RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 350
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 149/247 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+KQ+ R++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G
Sbjct: 103 IKQNDVTSRMARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDHTKG 162
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+SI++ +A AR I+IP + I+K + + L G+ P EIA
Sbjct: 163 FKFSTYATWWIRQSITRAIADQARTIRIPVHMVETINKYTRVSRQLLQELGRDPLSEEIA 222
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
K + ++R + + S++ IG+ ++ +F PD +P E+ +K+ +
Sbjct: 223 KEMNMPENKVRDIRKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEVAAFTLLKEQL 282
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L++L RE+ VL LR+GL+D R ++LEE+GK F V++E IR++E KA+ KLR
Sbjct: 283 MNVLDTLSPREKNVLKLRFGLDDGRARTLEEVGKEFKVTRERIRQIEAKALRKLRHPSRS 342
Query: 526 RDLSHFL 532
+ L +L
Sbjct: 343 KKLKDYL 349
>gi|400536819|ref|ZP_10800353.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
gi|400329832|gb|EJO87331.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
Length = 319
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR+ E L +
Sbjct: 259 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
>gi|157364824|ref|YP_001471591.1| RpoD family RNA polymerase sigma factor [Thermotoga lettingae TMO]
gi|157315428|gb|ABV34527.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga lettingae
TMO]
Length = 400
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 150/239 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI+S LV+ +A+ Y G G+PF DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 157 AKEKLIESNLRLVVSIAKRYIGRGLPFLDLIQEGNIGLLKAVEKFDWKKGYKFSTYATWW 216
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + HG+ P E+AK + ++
Sbjct: 217 IRQAITRAIADQARTIRIPVHMVETINKLNRITREYYQKHGEQPSLEELAKLMDKPVDKV 276
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ +G+ ++ +F D ++ SPK+ MR M++++ ++L++L+ R
Sbjct: 277 EEILQASKETVSLEAPVGEDEDSTVGDFVADENITSPKKEAMRMLMREELEKVLKTLNPR 336
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
E VL +RYGL D + K+LEE+G+ F+V++E IR++E KA+ KLR + L + L
Sbjct: 337 EAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLISL 395
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 169/281 (60%), Gaps = 1/281 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + K VQ L ++ +L + G +L WA A+ + L Q +A + ++
Sbjct: 29 EIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEPLELNQAIADADEAKRRMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY +WIR++I+
Sbjct: 89 EANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAIT 148
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A R I++P + +++KI+KA++ L+ G+ P E+AK L+ A++R E
Sbjct: 149 RAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAKELDLTPAQVREYLEK 208
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLV 481
R+ S+D ++GD + + E D SP+E VM+ + D+ R++ +L ++R+V+
Sbjct: 209 ARLPLSLDLRLGDNHDTELGEMLEDTGA-SPEEFVMQSSLSNDLERLMANLTPQQREVIS 267
Query: 482 LRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+R+GL D + +L IG++ ++S+E +R++E++A+TKLR S
Sbjct: 268 MRFGLKDGQSMTLARIGEILNISRERVRQIEREALTKLRKS 308
>gi|297622151|ref|YP_003710288.1| RNA polymerase sigma factor rpoD [Waddlia chondrophila WSU 86-1044]
gi|297377452|gb|ADI39282.1| RNA polymerase sigma factor rpoD [Waddlia chondrophila WSU 86-1044]
gi|337292552|emb|CCB90569.1| RNA polymerase sigma factor rpoD [Waddlia chondrophila 2032/99]
Length = 555
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 150/251 (59%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + + E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 301 RMLQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 360
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L G+ P E
Sbjct: 361 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGREPTPEE 420
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A GLS IR + + S+ ++GD +++ +F D SP E +K
Sbjct: 421 LANELGLSAERIREIYKIAQHPISLQAEVGDGGESQFGDFLEDTGADSPAEATGYSILKD 480
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L +L RER+VL+ R+GLND +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 481 KMNEVLLTLTDRERKVLIQRFGLNDGKPKTLEEVGVEFNVTRERIRQIEAKALRKMRHPT 540
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 541 RSKQLKAFLDL 551
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 175/288 (60%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ +K +L +E G +L WA AA +S L H+
Sbjct: 20 RVPLLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSPSELNSHINA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L + G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQNLGRAATVGELAQELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + +E D + SP++ V M+ D+ +++ L
Sbjct: 200 KQVREYLERARQPLSLDLRVGDNQDTELVELLED-TGPSPEDFVTHSAMQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++R+VL LR+GL D +P +L +IG ++S+E +R++E++A++KLR
Sbjct: 259 TAQQREVLALRFGLEDGQPMTLAKIGDRLNISRERVRQIEREALSKLR 306
>gi|300813859|ref|ZP_07094164.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300512046|gb|EFK39241.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 361
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 150/237 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+G+KFSTY +W
Sbjct: 124 AKKELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTKGFKFSTYATWW 183
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIAK + + ++
Sbjct: 184 IRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELGRDPLPEEIAKEMSIDVEKV 243
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD + SP++ +++ + +LE+L R
Sbjct: 244 REIQKIAQEPVSLETPIGEEEDSHLGDFIPDEEILSPQDAATFTLLREQLSTVLETLTDR 303
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL+D R ++LEE+GK F V++E IR++E KA+ KLR + L FL
Sbjct: 304 EKKVLTLRFGLDDGRARTLEEVGKEFAVTRERIRQIEAKAIRKLRHPSRSKKLKDFL 360
>gi|118463509|ref|YP_882780.1| RNA polymerase sigma factor SigB [Mycobacterium avium 104]
gi|254776043|ref|ZP_05217559.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp. avium
ATCC 25291]
gi|440778274|ref|ZP_20957040.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
gi|118164796|gb|ABK65693.1| sigma factor SigB [Mycobacterium avium 104]
gi|436721377|gb|ELP45512.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 319
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPI 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR+ E L +
Sbjct: 259 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
>gi|421611154|ref|ZP_16052305.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SH28]
gi|408497968|gb|EKK02476.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SH28]
Length = 568
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F+H RGYKFSTY +WIR++I++ +A
Sbjct: 329 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIAD 388
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + ++KI++ + L HG+ P E++K +GLSL + R + R
Sbjct: 389 QSRTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPL 448
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+DQ +GD ++ + EF D P R+ +K + +E+L+ RER++L LRYGL
Sbjct: 449 SLDQPVGDHDDSVFGEFLQDHRDDDPLVETNREALKHQIDLAMETLNYREREILRLRYGL 508
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G++F V++E +R++E KA+ KL+ + L FL
Sbjct: 509 ADGYTYTLEEVGRIFQVTRERVRQIESKAVRKLQQPYRAKSLVSFL 554
>gi|282882556|ref|ZP_06291177.1| RNA polymerase sigma factor RpoD [Peptoniphilus lacrimalis 315-B]
gi|281297698|gb|EFA90173.1| RNA polymerase sigma factor RpoD [Peptoniphilus lacrimalis 315-B]
Length = 361
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 150/237 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+G+KFSTY +W
Sbjct: 124 AKKELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTKGFKFSTYATWW 183
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIAK + + ++
Sbjct: 184 IRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELGRDPLPEEIAKEMNIEVEKV 243
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD + SP++ +++ + +LE+L R
Sbjct: 244 REIQKIAQEPVSLETPIGEEEDSHLGDFIPDEEILSPQDAATFTLLREQLSTVLETLTDR 303
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL+D R ++LEE+GK F V++E IR++E KA+ KLR + L FL
Sbjct: 304 EKKVLTLRFGLDDGRARTLEEVGKEFAVTRERIRQIEAKAIRKLRHPSRSKKLKDFL 360
>gi|417749572|ref|ZP_12397964.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458794|gb|EGO37751.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 319
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPI 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR+ E L +
Sbjct: 259 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
>gi|32474487|ref|NP_867481.1| transcription initiation factor sigma 70 [Rhodopirellula baltica SH
1]
gi|32445025|emb|CAD75027.1| transcription initiation factor sigma 70 [Rhodopirellula baltica SH
1]
Length = 568
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F+H RGYKFSTY +WIR++I++ +A
Sbjct: 329 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIAD 388
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + ++KI++ + L HG+ P E++K +GLSL + R + R
Sbjct: 389 QSRTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPL 448
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+DQ +GD ++ + EF D P R+ +K + +E+L+ RER++L LRYGL
Sbjct: 449 SLDQPVGDHDDSVFGEFLQDHRDDDPLVETNREALKHQIDLAMETLNYREREILRLRYGL 508
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G++F V++E +R++E KA+ KL+ + L FL
Sbjct: 509 ADGYTYTLEEVGRIFQVTRERVRQIESKAVRKLQQPYRAKSLVSFL 554
>gi|404393633|ref|ZP_10985559.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium CM2]
gi|404278859|gb|EJZ44345.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium CM2]
Length = 492
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 161/269 (59%), Gaps = 5/269 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK A LN + +S+R++K Y + +++++ LV+ +A+ Y G G+ F
Sbjct: 228 KEIGKIALLNP-DEEVELSQRMVKGD----EYAKMKIVEANLRLVVSIAKRYVGRGMLFL 282
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 283 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 342
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + + L G+ P EIA+ + +I + + S++ IG+ ++ +F
Sbjct: 343 LIRVNRQLVQELGRDPRPDEIAEQMNMPQEKIMEIMKIAQEPVSLETPIGEEEDSHLGDF 402
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
PD +P E +K+ + +LE+L RE++VL LR+GL+D R ++LEE+GK F V
Sbjct: 403 IPDDDALAPSEAAAYSLLKEQIEEVLETLTDREKKVLKLRFGLDDGRARTLEEVGKEFDV 462
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L +L
Sbjct: 463 TRERIRQIEAKALRKLRGPKKSNKLKDYL 491
>gi|266625476|ref|ZP_06118411.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
gi|288862622|gb|EFC94920.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
Length = 381
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 148/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A +S ++
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELADALDMSEDKV 264
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ R S++ IG+ ++ +F D +V +P+ V +++ + +L L R
Sbjct: 265 MEIMQIAREPASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDALLGDLKER 324
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 325 ERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 381
>gi|225388546|ref|ZP_03758270.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
gi|225045391|gb|EEG55637.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
Length = 381
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ ++ ++
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKV 264
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ R S++ IG+ ++ +F D +V +P+ V +++ + +L L R
Sbjct: 265 MEIMQIAREPASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDALLGDLKER 324
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 325 ERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 381
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|441521275|ref|ZP_21002936.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
gi|441459107|dbj|GAC60897.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
Length = 332
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 92 GEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A +R I++P L +++K+ + R+ L G+ D E+A +G+
Sbjct: 152 TWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELALESGIPA 211
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + +V+ + D+ +L +L
Sbjct: 212 EKIADLMDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETVVIANLLHSDIRSVLSTL 271
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ +RYGL D +P++L++IG+ F +S+E +R++E++ MTKLR + L +
Sbjct: 272 DEREMQVITMRYGLEDGQPRTLDQIGRAFGLSRERVRQIEREVMTKLRQGDRAEKLRAY 330
>gi|449134505|ref|ZP_21770001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
europaea 6C]
gi|448886780|gb|EMB17173.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
europaea 6C]
Length = 568
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F+H RGYKFSTY +WIR++I++ +A
Sbjct: 329 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIAD 388
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + ++KI++ + L HG+ P E++K +GLSL + R + R
Sbjct: 389 QSRTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPL 448
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+DQ +GD ++ + EF D P R+ +K + +E+L+ RER++L LRYGL
Sbjct: 449 SLDQPVGDHDDSVFGEFLQDHRDDDPLVETNREALKHQIDLAMETLNYREREILRLRYGL 508
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G++F V++E +R++E KA+ KL+ + L FL
Sbjct: 509 ADGYTYTLEEVGRIFQVTRERVRQIESKAVRKLQQPYRAKSLVSFL 554
>gi|154249128|ref|YP_001409953.1| RpoD family RNA polymerase sigma factor [Fervidobacterium nodosum
Rt17-B1]
gi|154153064|gb|ABS60296.1| RNA polymerase, sigma 70 subunit, RpoD family [Fervidobacterium
nodosum Rt17-B1]
Length = 372
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 148/233 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+EELI S LV+ +A+ Y G G+ F DL+Q G++G+++ E+FD ++GYKFSTY +W
Sbjct: 130 AKEELIISNLRLVVSMAKRYLGKGLSFLDLIQEGSLGLIKAVEKFDWSKGYKFSTYATWW 189
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+KIQK ++ HG+ P IA+ G + +I
Sbjct: 190 IRQAITRAIADQARTIRVPVHMVETINKIQKIKREYVQEHGEEPSIEYIAEQVGKPVDKI 249
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ S++ + + ++ +F D S+ SPK+ +R M++++ ++LE+L+ R
Sbjct: 250 EEILQAAPETLSLETPVNEEDDSSMGDFIADESIGSPKKEAIRTLMREEIDKLLETLNDR 309
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
E++VL +RYGL + +P +LEE+G+ F V++E IR++E KA+ KLR R L
Sbjct: 310 EKKVLKMRYGLYNGKPMTLEEVGQFFGVTRERIRQIEVKALRKLRHPSRSRYL 362
>gi|146295919|ref|YP_001179690.1| RpoD family RNA polymerase sigma-70 subunit [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409495|gb|ABP66499.1| RNA polymerase, sigma 70 subunit, RpoD family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 411
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 185 LVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 244
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 245 QARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPV 304
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L+SL+ RE++VL LR+GL
Sbjct: 305 SLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGL 364
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+GK F+V++E IR++E KA+ KLR + L FL
Sbjct: 365 EDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 410
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 175/292 (59%), Gaps = 1/292 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ +Q + +E ++ E+E G+ + A A G++ER L+Q L + ++I
Sbjct: 73 EVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQVAKRKMI 132
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 133 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 192
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A ++ +++ +
Sbjct: 193 RTIANDARTIRLPIHIVEKLNKLKKAQRELRRDLKRPPTEAELATVLEITEEQLQQLLQV 252
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D + +SP+ + + M++++ +L E L RE++++
Sbjct: 253 RRQSLSLNVRVGREEDTELVDLLEDNNSRSPEAQMSERMMRQEIAEVLSEVLTEREKEIV 312
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
LRYG+ +LEE+G +F++S+E +R+++ +AM KLR + R L +L
Sbjct: 313 CLRYGIETGETHTLEEVGNIFNLSRERVRQIQTRAMRKLRRPQVARRLQGWL 364
>gi|402838551|ref|ZP_10887056.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium OBRC8]
gi|402272765|gb|EJU21981.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium OBRC8]
Length = 492
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 161/269 (59%), Gaps = 5/269 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK A LN + +S+R++K Y + +++++ LV+ +A+ Y G G+ F
Sbjct: 228 KEIGKIALLNP-DEEVELSQRMVKGD----EYAKMKIVEANLRLVVSIAKRYVGRGMLFL 282
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 283 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 342
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + + L G+ P EIA+ + +I + + S++ IG+ ++ +F
Sbjct: 343 LIRVNRQLVQELGRDPRPDEIAEQMNMPQEKIMEIMKIAQEPVSLETPIGEEEDSHLGDF 402
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
PD +P E +K+ + +LE+L RE++VL LR+GL+D R ++LEE+GK F V
Sbjct: 403 IPDDDALAPSEAAAYSLLKEQIEEVLETLTDREKKVLKLRFGLDDGRARTLEEVGKEFDV 462
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L +L
Sbjct: 463 TRERIRQIEAKALRKLRGPKKSNKLKDYL 491
>gi|363890577|ref|ZP_09317904.1| hypothetical protein HMPREF9628_00551 [Eubacteriaceae bacterium
CM5]
gi|361964953|gb|EHL17953.1| hypothetical protein HMPREF9628_00551 [Eubacteriaceae bacterium
CM5]
Length = 432
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 161/269 (59%), Gaps = 5/269 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK A LN + +S+R++K Y + +++++ LV+ +A+ Y G G+ F
Sbjct: 168 KEIGKIALLNP-DEEVELSQRMVKGD----EYAKMKIVEANLRLVVSIAKRYVGRGMLFL 222
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 223 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 282
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + + L G+ P EIA+ + +I + + S++ IG+ ++ +F
Sbjct: 283 LIRVNRQLVQELGRDPRPDEIAEQMNMPQEKIMEIMKIAQEPVSLETPIGEEEDSHLGDF 342
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
PD +P E +K+ + +LE+L RE++VL LR+GL+D R ++LEE+GK F V
Sbjct: 343 IPDDDALAPSEAAAYSLLKEQIEEVLETLTDREKKVLKLRFGLDDGRARTLEEVGKEFDV 402
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L +L
Sbjct: 403 TRERIRQIEAKALRKLRGPKKSNKLKDYL 431
>gi|335045942|ref|ZP_08538965.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 108
str. F0425]
gi|363897360|ref|ZP_09323899.1| hypothetical protein HMPREF9624_00461 [Oribacterium sp. ACB7]
gi|333759728|gb|EGL37285.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 108
str. F0425]
gi|361958857|gb|EHL12154.1| hypothetical protein HMPREF9624_00461 [Oribacterium sp. ACB7]
Length = 385
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 151/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD +G+K STY +
Sbjct: 147 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATW 206
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A++ ++ +
Sbjct: 207 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMTEEK 266
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
++ + R S++ IG+ ++ +F D +V SP+ V +++ + +L+ L
Sbjct: 267 VQEIMQIAREPASLETPIGEEDDSNLGDFVADANVLSPEGNVESVMLREHIDSLLDDLKE 326
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 327 RERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 384
>gi|417304271|ref|ZP_12091300.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica WH47]
gi|440713474|ref|ZP_20894075.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SWK14]
gi|327539483|gb|EGF26098.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica WH47]
gi|436441940|gb|ELP35132.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SWK14]
Length = 562
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F+H RGYKFSTY +WIR++I++ +A
Sbjct: 323 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIAD 382
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + ++KI++ + L HG+ P E++K +GLSL + R + R
Sbjct: 383 QSRTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPL 442
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+DQ +GD ++ + EF D P R+ +K + +E+L+ RER++L LRYGL
Sbjct: 443 SLDQPVGDHDDSVFGEFLQDHRDDDPLVETNREALKHQIDLAMETLNYREREILRLRYGL 502
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G++F V++E +R++E KA+ KL+ + L FL
Sbjct: 503 ADGYTYTLEEVGRIFQVTRERVRQIESKAVRKLQQPYRAKSLVSFL 548
>gi|363893636|ref|ZP_09320731.1| hypothetical protein HMPREF9629_01057 [Eubacteriaceae bacterium
ACC19a]
gi|361963438|gb|EHL16510.1| hypothetical protein HMPREF9629_01057 [Eubacteriaceae bacterium
ACC19a]
Length = 432
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 161/269 (59%), Gaps = 5/269 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK A LN + +S+R++K Y + +++++ LV+ +A+ Y G G+ F
Sbjct: 168 KEIGKIALLNP-DEEVELSQRMVKGD----EYAKMKIVEANLRLVVSIAKRYVGRGMLFL 222
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 223 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 282
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + + L G+ P EIA+ + +I + + S++ IG+ ++ +F
Sbjct: 283 LIRVNRQLVQELGRDPRPDEIAEQMNMPQEKIMEIMKIAQEPVSLETPIGEEEDSHLGDF 342
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
PD +P E +K+ + +LE+L RE++VL LR+GL+D R ++LEE+GK F V
Sbjct: 343 IPDDDALAPSEAAAYSLLKEQIEEVLETLTDREKKVLKLRFGLDDGRARTLEEVGKEFDV 402
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L +L
Sbjct: 403 TRERIRQIEAKALRKLRGPKKSNKLKDYL 431
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 187/318 (58%), Gaps = 8/318 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQV--VANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ G QV + +L +K L
Sbjct: 1 MPTANVNSKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIVYGKQVQRMMSLFEMKDQL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ G S WA+A + E LK+ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 TQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
KI+K ++ L+ G+ EIA + ++IR R S+D ++GD + + E
Sbjct: 179 KIKKTQRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSE 238
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
D SP + + ++ +++D+ ++E L ++R VL+LR+GL D + SL +IGK +
Sbjct: 239 LLEDHEA-SPDQYITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLN 297
Query: 503 VSKEWIRKLEKKAMTKLR 520
+S+E +R+LE +A+ +LR
Sbjct: 298 ISRERVRQLEHQALAQLR 315
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 176/300 (58%), Gaps = 5/300 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L+ IK +L + + +L WA +AG+ L + +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIAL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A LS
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATVSELAAELELSP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D V SP + V++ M D+ R++ L
Sbjct: 200 KQVREYLERARLPLSLDLRVGDNHDTELGELLEDTGV-SPDDFVLQSCMSTDIERMMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++R+VL LR+GL D + +L +IG ++S+E +R++E++A+TKLR + D+ +L
Sbjct: 259 TPQQREVLSLRFGLVDGQSMTLAKIGDRLNISRERVRQIEREALTKLRKRKA--DMDQYL 316
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E +++K VQ + +++++ L+ G+ + AQ ++ER L+ L G + ++I
Sbjct: 85 EVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRVAKRKMI 144
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 145 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPEKGYKFSTYAYWWIRQAIT 204
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+AK ++ + +R +
Sbjct: 205 RTIANDARTIRLPIHIVEKLNKLKKAQRELKQGLQRNPNEEELAKALEITPSNLRQLLQL 264
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D ++ P+E + M+++++ +L + L RE+ V+
Sbjct: 265 RRRSLSLNHRVGKGEDTELVDLLEDNELRLPEEQMSETMMRQEIWEVLSDVLTEREKDVI 324
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 325 SLRYGLASSEPYTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRLKGWLT 377
>gi|284046131|ref|YP_003396471.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283950352|gb|ADB53096.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 367
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 152/237 (64%), Gaps = 3/237 (1%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++++S LV+ +A+NYR G+PF DL+Q G +G+++ AE+FD+ +G+KFSTY +W
Sbjct: 131 AKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGLVRAAEKFDYRKGFKFSTYATWW 190
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + +++KI +A + L G+ P EIA TG+ E+
Sbjct: 191 IRQAIARALADKARTIRIPVHVVEKLNKIGRAERKLVTELGREPTAEEIADVTGIDPEEV 250
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
S + S+++ +GD +++ +F D +SP E K+ + LE+L R
Sbjct: 251 DSIKRSAQAPVSLEKPVGDEEESEFGQFIADERAESPYERAAEILTKEALREALENLSYR 310
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR---DSETCRDLS 529
ER+VL LRYGL P++L+E+G+ F+V++E IR++E +++ KL+ +++ RD++
Sbjct: 311 ERRVLELRYGLGGEHPRTLDEVGRTFNVTRERIRQIENQSLKKLQSLAEAQKLRDVA 367
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 158/247 (63%), Gaps = 1/247 (0%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
W Q + K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 156 TWKQQSKAYLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 215
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 216 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQ 275
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453
+ P + EIA +++ ++R ++ ++ S++ IG +++ +F + ++P+
Sbjct: 276 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPE 334
Query: 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513
+ V + +++D+ +L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E
Sbjct: 335 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 394
Query: 514 KAMTKLR 520
KA+ KLR
Sbjct: 395 KALRKLR 401
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 181/306 (59%), Gaps = 6/306 (1%)
Query: 220 PTIFSA----ERALNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNC 274
PT +S+ L+ GR + R E + K VQ + +K LE++ + A+L
Sbjct: 20 PTTYSSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLE 79
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ VSE+VLKQ + G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+
Sbjct: 80 WAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 139
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+G E+FD TRGYKFSTY +WIR++I++ +A+ AR I++P + +++KI++ ++ L S
Sbjct: 140 RGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELIQS 199
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKE 454
G+ P EIA+ L ++IR R S+D ++GD + + E D + SP +
Sbjct: 200 LGRSPTPSEIAQALELEPSQIREYLLMARHPISLDLRVGDNQDTELQELLEDET-SSPDD 258
Query: 455 IVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514
+ + +++D+ +L L ++R+VLVLR+GL D + SL ++G +S+E +R+LE +
Sbjct: 259 YITGELLRQDINTLLAELSEQQRRVLVLRFGLEDGKEMSLAKVGDKLQLSRERVRQLEHQ 318
Query: 515 AMTKLR 520
A+ LR
Sbjct: 319 ALAFLR 324
>gi|419718484|ref|ZP_14245801.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
gi|383305319|gb|EIC96687.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
Length = 407
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 148/238 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 169 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 228
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 229 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 288
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 289 VMEIMQIAREPASLETPIGEEDDSNLGDFVADSNVLTPEGNVESVMLREHIDTLLGDLKE 348
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F V++E IR++E KA+ KLR+ + + FL
Sbjct: 349 RERQVIVLRFGLEDGHPRTLEEVGKEFKVTRERIRQIEAKALRKLRNPVRSKRIRDFL 406
>gi|433603602|ref|YP_007035971.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
gi|407881455|emb|CCH29098.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
Length = 330
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 90 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 149
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ E+AK +GL+
Sbjct: 150 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATTDELAKESGLTP 209
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A++ + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 210 AKVSDLLDHARDPVSLDMPVGAEEDAPLGDFIEDSDATDAESAVISGLLQDDLRRVLATL 269
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+ V+ LRYGL D +P++L++IGKLF +S+E +R++E++ M+KLR E L +
Sbjct: 270 DQREQSVIRLRYGLEDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRQGERAAKLRAY 328
>gi|358064323|ref|ZP_09150899.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
gi|356697448|gb|EHI59031.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
Length = 376
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 140 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 199
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ +S ++
Sbjct: 200 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALEMSEDKV 259
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ R S++ IG+ ++ +F D +V +P+ V +++ + +L L R
Sbjct: 260 MEIMQIAREPASLETPIGEEDDSNLGDFVADSNVVTPEGNVESVMLREHIDALLGDLKER 319
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 320 ERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 376
>gi|315652381|ref|ZP_07905370.1| RNA polymerase sigma factor rpoD [Lachnoanaerobaculum saburreum DSM
3986]
gi|315485355|gb|EFU75748.1| RNA polymerase sigma factor rpoD [Lachnoanaerobaculum saburreum DSM
3986]
Length = 410
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 148/238 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 232 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 291
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 292 VMEIMQIAREPASLETPIGEEDDSNLGDFVADSNVLTPEGNVESVMLREHIDTLLGDLKE 351
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F V++E IR++E KA+ KLR+ + + FL
Sbjct: 352 RERQVIVLRFGLEDGHPRTLEEVGKEFKVTRERIRQIEAKALRKLRNPVRSKRIRDFL 409
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 174/290 (60%), Gaps = 3/290 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L ++ L + G +L WA +A V L +A
Sbjct: 34 RVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPVELNTAIAE 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y I DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P IE+A L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAIELADELELTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D +P++ V++ + D+ R+++ L
Sbjct: 214 RQVRECLEKARLPLSLDLRLGDNYDTELGEMLEDTGA-TPEDFVIQSSLSSDIERLMKEL 272
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
++++V+ LR+GL D + +L +IG++ ++S+E +R++E++A+TKLR S
Sbjct: 273 TPQQKEVIKLRFGLIDGQALTLSKIGEILNISRERVRQIEREALTKLRKS 322
>gi|302386858|ref|YP_003822680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
saccharolyticum WM1]
gi|302197486|gb|ADL05057.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
saccharolyticum WM1]
Length = 380
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 151/241 (62%), Gaps = 8/241 (3%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 144 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 203
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ +S ++
Sbjct: 204 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVSELAEALDMSEDKV 263
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP----KEIVMRQHMKKDVFRILES 471
+ R S++ IG+ ++ +F D +V +P + +++R+H+ +L
Sbjct: 264 MEIMQIAREPASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDA----LLGD 319
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
L RERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + F
Sbjct: 320 LKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDF 379
Query: 532 L 532
L
Sbjct: 380 L 380
>gi|313892356|ref|ZP_07825948.1| RNA polymerase sigma factor RpoD [Dialister microaerophilus UPII
345-E]
gi|313119215|gb|EFR42415.1| RNA polymerase sigma factor RpoD [Dialister microaerophilus UPII
345-E]
Length = 393
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 143/225 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+ +GYKFSTY +W
Sbjct: 160 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYKKGYKFSTYATWW 219
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + G+ + E+AK G+S+ +I
Sbjct: 220 IRQAITRSIADQARTIRVPVHMVETINKMNRIGRKFLQEFGREASNEELAKEMGISVEKI 279
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R A + + S++ IG+ ++ +F D+ SP+E ++ ++++L L R
Sbjct: 280 REAKKAAQDPISLETPIGEKEDSHLGDFIEDQKTSSPEEEAAATMRREQIYKLLNELTER 339
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
E+ VL LR+G++D P++LEE+GK F V++E IR++E KA+ KLR
Sbjct: 340 EKGVLALRFGMDDGTPRTLEEVGKYFGVTRERIRQIEGKALKKLR 384
>gi|402312660|ref|ZP_10831584.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
gi|400369118|gb|EJP22121.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
Length = 410
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 148/238 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 232 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 291
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 292 VMEIMQIAREPASLETPIGEEDDSNLGDFVADANVLTPEGNVESVMLREHIDTLLGDLKE 351
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F V++E IR++E KA+ KLR+ + + FL
Sbjct: 352 RERQVIVLRFGLEDGHPRTLEEVGKEFKVTRERIRQIEAKALRKLRNPVRSKRIRDFL 409
>gi|367468373|ref|ZP_09468244.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
gi|365816548|gb|EHN11575.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
Length = 367
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 157/241 (65%), Gaps = 11/241 (4%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++++S LV+ +A+NYR G+PF DL+Q G +G+++ AE+FD+ +G+KFSTY +W
Sbjct: 131 AKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGLVRAAEKFDYRKGFKFSTYATWW 190
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + +++KI +A + L G+ P EIA+ TG+ E+
Sbjct: 191 IRQAIARALADKARTIRIPVHVVEKLNKIGRAERKLVTELGREPTPEEIAEVTGIDPEEV 250
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP----KEIVMRQHMKKDVFRILES 471
S + S+++ +GD +++ +F D +SP EI+ ++H+++ LE+
Sbjct: 251 ESIKRSAQAPVSLEKPVGDEEESEFGQFIADERAESPYERAAEILTKEHLRE----ALEN 306
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR---DSETCRDL 528
L RER+VL LRYGL +P +L+E+G F+V++E IR++E +++ KL+ +++ RD+
Sbjct: 307 LSYRERRVLELRYGLGGEKPCTLDEVGHRFNVTRERIRQIENQSLKKLQSLAEAQKLRDV 366
Query: 529 S 529
+
Sbjct: 367 A 367
>gi|296171822|ref|ZP_06852936.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893958|gb|EFG73726.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 329
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 89 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 149 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 209 EKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 268
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR E L +
Sbjct: 269 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 327
>gi|373468298|ref|ZP_09559555.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371766389|gb|EHO54644.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 410
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 148/238 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 232 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 291
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 292 VMEIMQIAREPASLETPIGEEDDSNLGDFVADSNVLTPEGNVESVMLREHIDTLLGDLKE 351
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F V++E IR++E KA+ KLR+ + + FL
Sbjct: 352 RERQVIVLRFGLEDGHPRTLEEVGKEFKVTRERIRQIEAKALRKLRNPVRSKRIRDFL 409
>gi|254821657|ref|ZP_05226658.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379748152|ref|YP_005338973.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379755443|ref|YP_005344115.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|379762989|ref|YP_005349386.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|387876818|ref|YP_006307122.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|406031681|ref|YP_006730572.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|443306610|ref|ZP_21036398.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
gi|378800516|gb|AFC44652.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|378805659|gb|AFC49794.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|378810931|gb|AFC55065.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|386790276|gb|AFJ36395.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|405130228|gb|AFS15483.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|442768174|gb|ELR86168.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
Length = 319
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GKAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR+ E L +
Sbjct: 259 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
>gi|404483026|ref|ZP_11018251.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
gi|404344116|gb|EJZ70475.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
Length = 410
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 148/238 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 232 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 291
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L
Sbjct: 292 VMEIMQIAREPASLETPIGEEDDSNLGDFVADANVLTPEGNVESVMLREHIDTLLGDLKE 351
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F V++E IR++E KA+ KLR+ + + FL
Sbjct: 352 RERQVIVLRFGLEDGHPRTLEEVGKEFKVTRERIRQIEAKALRKLRNPVRSKRIRDFL 409
>gi|312622967|ref|YP_004024580.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203434|gb|ADQ46761.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor kronotskyensis 2002]
Length = 417
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 191 LVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 250
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 251 QARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPV 310
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L+SL+ RE++VL LR+GL
Sbjct: 311 SLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGL 370
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+G+ F+V++E IR++E KA+ KLR + L FL
Sbjct: 371 EDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
>gi|329121328|ref|ZP_08249954.1| DNA-directed RNA polymerase sigma subunit RpoD [Dialister
micraerophilus DSM 19965]
gi|327469737|gb|EGF15203.1| DNA-directed RNA polymerase sigma subunit RpoD [Dialister
micraerophilus DSM 19965]
Length = 396
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 143/225 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+ +GYKFSTY +W
Sbjct: 163 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYKKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + G+ + E+AK G+S+ +I
Sbjct: 223 IRQAITRSIADQARTIRVPVHMVETINKMNRIGRKFLQEFGREASNEELAKEMGISVEKI 282
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R A + + S++ IG+ ++ +F D+ SP+E ++ ++++L L R
Sbjct: 283 REAKKAAQDPISLETPIGEKEDSHLGDFIEDQKTSSPEEEAAATMRREQIYKLLNELTER 342
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
E+ VL LR+G++D P++LEE+GK F V++E IR++E KA+ KLR
Sbjct: 343 EKGVLALRFGMDDGTPRTLEEVGKYFGVTRERIRQIEGKALKKLR 387
>gi|404446700|ref|ZP_11011803.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
gi|403650063|gb|EJZ05350.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
Length = 319
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 150/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 175/308 (56%), Gaps = 15/308 (4%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK--QHLAFG 293
L A+ E E+++ + R L KE G+ +L A G+ ++V+K + +
Sbjct: 145 LLTAKQEIELAQCAEAF-KFRRTDKRLAKELGRKPTLPEIAVEMGLDKKVIKAVEKTSKD 203
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD RG+K
Sbjct: 204 WNDKQGEAAERMLIQANLRLVVSIAKKYMGRGLTFLDLIQEGNIGLMRAVEKFDWRRGFK 263
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I+IP + I+K ++ + L + + P E++K
Sbjct: 264 FSTYATWWIRQAITRALADQSRTIRIPVHMVETINKYKRIERELEQKYERPPTAEEVSKE 323
Query: 408 TGLSLAEIRSASECLRI---VGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKD 464
G+ EI A E L+I S++ +G + + EF PD SP E ++ +K
Sbjct: 324 MGI---EIEKAQEILKISQDTTSLETPVGKEEDTRLKEFIPDEVGLSPFESASQELLKGH 380
Query: 465 VFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
+ +L++L+ RER+VL LR+GL D R ++LEE+G+ F V++E IR++E KA+ KLR
Sbjct: 381 INEVLDTLNPRERKVLELRFGLKDGRSRTLEEVGRDFGVTRERIRQIEAKALRKLRHPSR 440
Query: 525 CRDLSHFL 532
+ L +L
Sbjct: 441 SKKLKDYL 448
>gi|163781693|ref|ZP_02176693.1| RNA polymerase sigma factor RpoD [Hydrogenivirga sp. 128-5-R1-1]
gi|159882913|gb|EDP76417.1| RNA polymerase sigma factor RpoD [Hydrogenivirga sp. 128-5-R1-1]
Length = 571
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 150/236 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ +I+S LV+ +A+ Y G+ F DL+Q GN+G+++ +++D+ +GYKFSTY +W
Sbjct: 334 AKQVMIQSNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWW 393
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I++I KA K L G+ P EIAK+ G++ ++
Sbjct: 394 IRQAITRAIADQARTIRIPVHMIETINRIIKASKRLFQELGREPTPEEIAKHLGMTPDKV 453
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + S++ IGD + +F D+SV +P+E V R+ +++ + R+LE+L +
Sbjct: 454 RKVLRSAQEPISLETPIGDDEDTFLKDFIEDKSVPNPEEYVSRKLLREQLERVLETLSDK 513
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
ER++L RYGL D +LE++GK+F+V++E IR++E KA+ KLR + L F
Sbjct: 514 EREILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKLRHPSRAKYLKDF 569
>gi|427412602|ref|ZP_18902794.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
gi|425716409|gb|EKU79393.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
Length = 394
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 154/254 (60%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG + + + G +++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 141 AGAKDDASYKEMKAGEKAKQKLIDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 200
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 201 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 260
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMR 458
P EIA+ G+S+ +R + + S++ IG+ ++ +F D+ +P +
Sbjct: 261 PLPEEIAEGMGISVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAIAPDDAASY 320
Query: 459 QHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518
+K+ + + L RE+QVLVLR+GL D +P++LEE+G+ F+V++E IR++E KA+TK
Sbjct: 321 ILLKEQIEDVFSCLTDREQQVLVLRFGLKDGKPRTLEEVGQHFNVTRERIRQIEGKALTK 380
Query: 519 LRDSETCRDLSHFL 532
LR+ + FL
Sbjct: 381 LRNRGKRDKIKDFL 394
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 322
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 82 GQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+ +
Sbjct: 142 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELAAESGIPV 201
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + DV +L +L
Sbjct: 202 EKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAESAVIAGLLHHDVRSVLATL 261
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR E L +
Sbjct: 262 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRKGERADRLRAY 320
>gi|421189689|ref|ZP_15647003.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB422]
gi|421190853|ref|ZP_15648137.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB548]
gi|399972779|gb|EJO06978.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB422]
gi|399973549|gb|EJO07714.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB548]
Length = 458
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 160/269 (59%), Gaps = 2/269 (0%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 307
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + ++ L G+ P EI GL+ ++R + + S++ IG+ ++ +F
Sbjct: 308 LIRIQRTLIQDLGRDPMPEEIGAEMGLTADKVREIQKIAQEPVSLETPIGEENDSHLGDF 367
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D +SP E Q +K + +L +L RE VL LR+GL D + ++LEE+G++F V
Sbjct: 368 IEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGV 427
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L F+
Sbjct: 428 TRERIRQIEAKALRKLRHPSRSKQLKDFM 456
>gi|375142610|ref|YP_005003259.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823231|gb|AEV76044.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 319
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 177/301 (58%), Gaps = 5/301 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ A L+ K L K G+ S WA+ AGVS + LKQ L
Sbjct: 21 RVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALED 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA+++L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRSLAQDLGRAATIAELADELDLNP 200
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+IR E R+ S+D ++GD + + + D SP++ ++ M+ D+ ++ L
Sbjct: 201 KQIREYLERARLPLSLDLRVGDNQDTELGDLLEDDGA-SPEDYALQSSMRSDLEVLMADL 259
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++RQVL LR+GL + + +L +IG ++S+E +R++E++A+TKLR + +D+ +L
Sbjct: 260 TDQQRQVLALRFGLENGQTMTLAKIGDRLNISRERVRQIEREALTKLRKRK--QDMGDYL 317
Query: 533 V 533
Sbjct: 318 A 318
>gi|363899334|ref|ZP_09325843.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|395208255|ref|ZP_10397496.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
gi|361958374|gb|EHL11673.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|394705836|gb|EJF13360.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
Length = 385
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 151/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD +G+K STY +
Sbjct: 147 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATW 206
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A++ ++ +
Sbjct: 207 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMTEEK 266
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
++ + R S++ IG+ ++ +F D +V SP+ V +++ + +L+ L
Sbjct: 267 VQEIMQIAREPASLETPIGEEDDSNLGDFVADANVLSPEGNVESVMLREHIDSLLDDLKE 326
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+G+ F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 327 RERQVIVLRFGLEDGHPRTLEEVGREFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 384
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 166/280 (59%), Gaps = 1/280 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ L +KT +++ G+ S WA AA + L Q L G + ++
Sbjct: 37 QEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQAKRQM 96
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GYKFSTY +WIR++I
Sbjct: 97 IEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWWIRQAI 156
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A+ AR I++P + +++KI++ ++ L+ + G+ EIA+ L + ++R
Sbjct: 157 TRAIAQQARTIRLPIHITEKLNKIKRVQRELSQTLGRSATVGEIAEALELEVTQVREYLT 216
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVL 480
R S+D +IGD + + E D + SP++ +R+ +K+D+ +L L ++++V+
Sbjct: 217 MARQPISLDVRIGDNQDTELQELLEDDTA-SPEDFTVRESLKQDIQTLLAELTPQQQEVI 275
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
LRYGLND SL ++G ++S+E +R+LE++A+ LR
Sbjct: 276 TLRYGLNDGNELSLAKVGNRLNISRERVRQLEQQALKHLR 315
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 157/264 (59%), Gaps = 11/264 (4%)
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+N AQ ++LK A G +++L ++ LV+ +A+ Y G G+ F DL+Q GN+
Sbjct: 358 MNLEAQI-----KILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 412
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L
Sbjct: 413 GLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQL 472
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG---SIDQKIGDCLNAKYLEFAPDRS 448
G+ P EIA+ + +R E L+I S++ IG+ ++ +F D +
Sbjct: 473 LQELGREPSPEEIAREMETTPDRVR---EILKISQEPVSLETPIGEEEDSHLGDFIQDEN 529
Query: 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWI 508
P E +K+ + +L++L RER+VL+LR+GL D R ++LEE+GK F+V++E I
Sbjct: 530 APVPAEAATFTLLKEQLNEVLDTLTERERKVLILRFGLEDGRGRTLEEVGKEFNVTRERI 589
Query: 509 RKLEKKAMTKLRDSETCRDLSHFL 532
R++E KA+ KLR R L +L
Sbjct: 590 RQIEAKALRKLRHPSRSRKLKDYL 613
>gi|326791438|ref|YP_004309259.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
lentocellum DSM 5427]
gi|326542202|gb|ADZ84061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
lentocellum DSM 5427]
Length = 363
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 161/270 (59%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L+ E +L Q + G +++L ++ LV+ +A+ Y G G+ F
Sbjct: 99 KEIGKVPLLSAE------QEIILAQRMQDGDQEAKKKLAEANLRLVVSIAKRYVGRGMLF 152
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 153 LDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 212
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + + L G+ P+ EIAK + ++++R + + S++ IG+ ++ +
Sbjct: 213 KLMRVSRQLLQELGRDPQPEEIAKRMDMPVSKVREIMKISQEPVSLETPIGEEEDSHLGD 272
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F PD + P E +K+ + +L++L RE++VL LR+GL+D R ++LEE+GK F
Sbjct: 273 FIPDEDIPVPAEAAAFTLLKEQLIEVLDTLTEREQKVLRLRFGLDDGRARTLEEVGKEFS 332
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KLR + L +L
Sbjct: 333 VTRERIRQIEAKALRKLRHPSRSKKLKDYL 362
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 180/288 (62%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ LE +K +L +E G+ ++ WA+AA ++++ L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKMTQKELRSAIEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATIAELAEELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D + +SP++ ++ D+ R++E L
Sbjct: 200 RQVREYLERARQPLSLDLRVGDNQDTELGDLLED-TGQSPEDYATHSSLQLDLDRLMEEL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++VL LR+GL+D +P +L +IG + ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVLALRFGLSDGKPLTLAKIGSILNISRERVRQIEREALAKLR 306
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 155/235 (65%), Gaps = 1/235 (0%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 174 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 233
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA
Sbjct: 234 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIA 293
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 294 TRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDL 352
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 353 ENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 407
>gi|342215570|ref|ZP_08708217.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341586460|gb|EGS29860.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 366
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 158/269 (58%), Gaps = 5/269 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK + L + A + K+ ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 102 KEIGKISLLTADEEVA-----IAKRMENGDELAKQELAEANLRLVVSIAKRYVGRGMSFL 156
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 157 DLIQEGNLGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 216
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + ++ L G+ P EIA+ L + ++R + + S++ IG+ ++ +F
Sbjct: 217 LVRVQRQLVQDLGRDPSPEEIAQEMNLDVEKVREIQKIAQEPVSLETPIGEEEDSHLGDF 276
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
PD V SP + +K+ + +L +L RE++VL LR+GL D R ++LEE+GK F V
Sbjct: 277 IPDDEVLSPVDAATFTLLKEQLDTVLTTLTEREKKVLTLRFGLEDGRARTLEEVGKEFDV 336
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L +L
Sbjct: 337 TRERIRQIEAKALRKLRHPSRSKKLKDYL 365
>gi|288818771|ref|YP_003433119.1| RNA polymerase sigma factor RpoD [Hydrogenobacter thermophilus
TK-6]
gi|384129520|ref|YP_005512133.1| RpoD subfamily RNA polymerase sigma-70 subunit [Hydrogenobacter
thermophilus TK-6]
gi|288788171|dbj|BAI69918.1| RNA polymerase sigma factor RpoD [Hydrogenobacter thermophilus
TK-6]
gi|308752357|gb|ADO45840.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Hydrogenobacter
thermophilus TK-6]
Length = 570
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 147/236 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ ++K LV+ +A+ Y G+ F DL+Q GN+G+++ +++D+ +GYKFSTY +W
Sbjct: 333 AKQVMVKCNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWW 392
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+ I KA K L G+ P EIAKY G+S+ +
Sbjct: 393 IRQAITRAIADQARTIRIPVHMIETINDITKAHKKLFQELGREPFPEEIAKYLGISVEKA 452
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + S++ IGD +F D+SV SP+E V R+ +++ + ++L +L +
Sbjct: 453 RKVMRTSQEPISLETPIGDDEETHLKDFIEDKSVLSPEEQVSRKLLREQLIKVLSTLGEK 512
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
E+++L+ RYGL D +LE+IGK+F+V++E IR++E KA+ KLR + L F
Sbjct: 513 EKEILMYRYGLVDGTEYTLEQIGKMFNVTRERIRQIETKAIRKLRHPARAKYLKDF 568
>gi|342213895|ref|ZP_08706614.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
gi|341597483|gb|EGS40042.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
Length = 410
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 154/254 (60%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + G +++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 157 AGNQEGATYKEVRLGSSAKQKLIDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 216
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+
Sbjct: 217 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQDLGRE 276
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMR 458
P EIA+ G+++ +R + + S++ IG+ ++ +F D+ +P +
Sbjct: 277 PSPEEIAEGMGITVERVREIQKISQEPVSLETPIGEEEDSHLGDFLEDKDAVAPDDAASF 336
Query: 459 QHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518
+++ + + L RE+QVL LR+GL D +P++LEE+G+ F+V++E IR++E KA+TK
Sbjct: 337 ILLREQIVEVFSCLTDREQQVLELRFGLKDGKPRTLEEVGQFFNVTRERIRQIEGKALTK 396
Query: 519 LRDSETCRDLSHFL 532
LR+ + FL
Sbjct: 397 LRNRGKRDKIKDFL 410
>gi|407647092|ref|YP_006810851.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
gi|407309976|gb|AFU03877.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
Length = 322
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 82 GQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+ +
Sbjct: 142 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDAELANESGIPV 201
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + DV +L +L
Sbjct: 202 DKISDLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAESAVIAGLLHHDVRSVLATL 261
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M+KLR E L +
Sbjct: 262 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRKGERADRLRAY 320
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 187/318 (58%), Gaps = 8/318 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQV--VANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ G QV + +L +K L
Sbjct: 1 MPTANVNSKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIVYGKQVQRMMSLFEMKDQL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ G S WA+A + E L++ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 TQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
KI+K ++ L+ G+ EIA + ++IR R S+D ++GD + + E
Sbjct: 179 KIKKTQRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSE 238
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
D SP + + ++ +++D+ ++E L ++R VL+LR+GL D + SL +IGK +
Sbjct: 239 LLEDHEA-SPDQYITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLN 297
Query: 503 VSKEWIRKLEKKAMTKLR 520
+S+E +R+LE +A+ +LR
Sbjct: 298 ISRERVRQLEHQALAQLR 315
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 180/288 (62%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+G+ + WA+ A +S + L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKISRKELQSIIEI 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ +E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVVELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D +SP++ ++ D+ R++E L
Sbjct: 200 KQVREYLERARQPLSLDLRVGDNQDTELGDLLEDDG-QSPEDFATHSSLQFDLERLMEDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
S++++V+ LR+GL D +P +L +IG ++S+E +R++E++A++KLR
Sbjct: 259 TSQQKEVIALRFGLLDGQPLTLAKIGSRLNISRERVRQIEREALSKLR 306
>gi|363420377|ref|ZP_09308469.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
gi|359735619|gb|EHK84576.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
Length = 320
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 80 GQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+ +
Sbjct: 140 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELANESGIPV 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + DV +L +L
Sbjct: 200 EKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETAVIAGLLHSDVRSVLATL 259
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M KLR+ + L +
Sbjct: 260 DEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLREGDRAERLRAY 318
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 179/293 (61%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE++ G + S + A ++E+ L+ L G + ++I
Sbjct: 107 EVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRVAKRKMI 166
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 167 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 226
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P ++E+A++ +++ ++R +
Sbjct: 227 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEVEMAEFLEMTVQQLRQLQQL 286
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D +SP+ + M+++++ +L + L RE+ V+
Sbjct: 287 RRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVLGDVLTPREKDVI 346
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 347 SLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 399
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 156/263 (59%), Gaps = 2/263 (0%)
Query: 272 LNCW--AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
L W A G + + L++ L ++E++++ LV+ +A+ Y G+ F DL+Q G
Sbjct: 421 LRMWMTADEMGDAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEG 480
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
N+G+++ E+F++ RGYKFSTY +WIR++I++ +A AR I+IP + I+K+ + +K
Sbjct: 481 NMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQK 540
Query: 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSV 449
L +G+ P EIA+ L + +RS + + S+ +GD + + +F D++
Sbjct: 541 QLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAA 600
Query: 450 KSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIR 509
++P E +K+ + +L++L RER+V+ R+GL D P++LEE+G+ F V++E IR
Sbjct: 601 ENPMEEASFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIR 660
Query: 510 KLEKKAMTKLRDSETCRDLSHFL 532
++E KA+ KLR + FL
Sbjct: 661 QIEAKALRKLRHPTRISKIKGFL 683
>gi|313888947|ref|ZP_07822607.1| RNA polymerase sigma factor RpoD [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845120|gb|EFR32521.1| RNA polymerase sigma factor RpoD [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 362
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 148/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+G+KFSTY +W
Sbjct: 125 AKKELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTKGFKFSTYATWW 184
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIA L + +
Sbjct: 185 IRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQDLGRDPLPEEIAAEMNLDVERV 244
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD + SP++ +K+ + +LE+L R
Sbjct: 245 REIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEILSPQDAATFTLLKEQLNTVLETLTDR 304
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL+D R ++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 305 EKKVLTLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 361
>gi|148823899|ref|YP_001288653.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis F11]
gi|253798208|ref|YP_003031209.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
1435]
gi|308232219|ref|ZP_07415326.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308369834|ref|ZP_07419229.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308371106|ref|ZP_07423839.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308372374|ref|ZP_07428435.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308373485|ref|ZP_07432499.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308374669|ref|ZP_07436917.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308375503|ref|ZP_07444157.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308377104|ref|ZP_07441142.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308378072|ref|ZP_07481430.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308379289|ref|ZP_07485765.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308380449|ref|ZP_07489983.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|385991992|ref|YP_005910290.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
gi|148722426|gb|ABR07051.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis F11]
gi|253319711|gb|ACT24314.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
1435]
gi|308214646|gb|EFO74045.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308326293|gb|EFP15144.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308329821|gb|EFP18672.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308333464|gb|EFP22315.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308337459|gb|EFP26310.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308341132|gb|EFP29983.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308346083|gb|EFP34934.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308348958|gb|EFP37809.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308353656|gb|EFP42507.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308357503|gb|EFP46354.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308361457|gb|EFP50308.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|339299185|gb|AEJ51295.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
Length = 345
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 105 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 164
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 165 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 224
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 225 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 284
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR E L +
Sbjct: 285 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 343
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 172/280 (61%), Gaps = 1/280 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ++ +L K L + + +L WAQAA + LK+ + G ++++
Sbjct: 37 QEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEWAQAAEKTPAELKKLIHQGKRAKQKM 96
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY +WIR++I
Sbjct: 97 IEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWWIRQAI 156
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A+ AR I++P + +++KI+K ++ L+ G+ P EIA L ++IR
Sbjct: 157 TRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPNQSEIANALDLEPSQIREYFS 216
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVL 480
R S+D K+GD + + E D + SP + + ++ M++D+ ++L+ L +++++V+
Sbjct: 217 IARQPISLDVKVGDNQDTELSELLEDEGL-SPDKYITQELMRQDLHKLLDELTTQQQEVV 275
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
LR+GL+D + SL +IG+ +S+E +R+LE++A+ LR
Sbjct: 276 RLRFGLDDGKELSLAKIGQRMGISRERVRQLEQQALAHLR 315
>gi|392416004|ref|YP_006452609.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615780|gb|AFM16930.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 319
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 150/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+++G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 165/288 (57%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ K VQ + L K L KE G SL+ WA SE LK ++
Sbjct: 29 RVPLLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIYVNQSENDLKHKIST 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ P EIAK L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D ++GD + + E D + SP+ ++ ++ D+ +L L
Sbjct: 209 AQIREYLNIARQPISLDVRVGDNQDTELQEMLEDDGL-SPEHYTTQEFLRHDLNNLLAEL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V+ LR+GL D SL ++G ++S+E +R+LE +A+T LR
Sbjct: 268 TPQQREVVTLRFGLEDGNEMSLAKVGDRLNISRERVRQLEHQALTHLR 315
>gi|323484891|ref|ZP_08090246.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323693741|ref|ZP_08107938.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|355624161|ref|ZP_09047550.1| hypothetical protein HMPREF1020_01629 [Clostridium sp. 7_3_54FAA]
gi|323401772|gb|EGA94115.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323502192|gb|EGB18057.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|354822100|gb|EHF06474.1| hypothetical protein HMPREF1020_01629 [Clostridium sp. 7_3_54FAA]
Length = 374
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 138 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 197
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+++ +S ++
Sbjct: 198 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVAELSEALEMSEDKV 257
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ R S++ IG+ ++ +F D +V +P+ V +++ + +L L R
Sbjct: 258 MEIMQIAREPASLETPIGEEDDSNLGDFVADSNVVTPEGNVESVMLREHIDALLGDLKER 317
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 318 ERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 374
>gi|1657704|gb|AAC44535.1| sigma factor MytB [Mycobacterium tuberculosis]
Length = 345
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 105 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 164
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 165 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 224
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 225 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 284
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR E L +
Sbjct: 285 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 343
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 181/288 (62%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+G+ + + WA+AA +S+R + +
Sbjct: 20 RVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLSKREFRSIVES 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVTELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D +SP++ ++ D+ R++E L
Sbjct: 200 KQVREYLERARQPLSLDLRVGDNQDTELGDLLEDDG-QSPEDFATHSSLQFDLERLMEDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
S++++V+ LR+GL D +P +L +IG ++S+E +R++E++A++KLR
Sbjct: 259 TSQQKEVIALRFGLLDGQPLTLAKIGSRLNISRERVRQIEREALSKLR 306
>gi|449064777|ref|YP_007431860.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
gi|449033285|gb|AGE68712.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 338
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 98 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 157
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 158 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 217
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 218 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 277
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR E L +
Sbjct: 278 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 336
>gi|144616|gb|AAA23168.1| sigma-A protein (sigA) [Chlamydia muridarum]
Length = 571
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKQEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 425 LGEELGFTPDRVREIYKIAQHPISLQAEVGDSGESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ ++L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKKVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|167970067|ref|ZP_02552344.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|254551766|ref|ZP_05142213.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289746512|ref|ZP_06505890.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|294994199|ref|ZP_06799890.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis 210]
gi|297635318|ref|ZP_06953098.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
4207]
gi|297732314|ref|ZP_06961432.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
R506]
gi|375295476|ref|YP_005099743.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|385995613|ref|YP_005913911.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|392431684|ref|YP_006472728.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
gi|422813758|ref|ZP_16862130.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|424948366|ref|ZP_18364062.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|289687040|gb|EFD54528.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|323718704|gb|EGB27866.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|328457981|gb|AEB03404.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|339295567|gb|AEJ47678.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|358232881|dbj|GAA46373.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|392053093|gb|AFM48651.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
Length = 333
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 93 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 152
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 153 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 212
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 213 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 272
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR E L +
Sbjct: 273 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 331
>gi|291522892|emb|CBK81185.1| RNA polymerase, sigma 70 subunit, RpoD [Coprococcus catus GD/7]
Length = 366
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ +I++ LV+ +A+ Y G GIPF DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 128 AKDRIIEANLRLVVSIAKKYVGRGIPFLDLIQEGNMGLIKAVEKFDYAKGFKFSTYATWW 187
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+SI++ +A + I++P + I+K + + L G+ P EIA+ G + ++
Sbjct: 188 IRQSITRGIADKGKTIRVPVHMVETINKTLRMSRNLLQELGREPTSEEIAERLGTTKQKV 247
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
A E R S+D IG+ ++ +F D ++ SP + Q +KK++ L++L R
Sbjct: 248 EEALEISRDPVSMDSPIGEEEDSSLGDFIEDENMLSPSDSADYQMLKKELVNALDTLTDR 307
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+V+ LR+GL D + ++LEE+GK F V++E IR++E KA+ KLR R L FL
Sbjct: 308 ERKVIELRFGLIDGQARTLEEVGKEFKVTRERIRQIEAKALRKLRHPSRSRKLKDFL 364
>gi|403730463|ref|ZP_10949020.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
gi|403202499|dbj|GAB93351.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
Length = 339
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G Y R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 99 GEYARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 158
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 159 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPA 218
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + DV +L +L
Sbjct: 219 EKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEGTSAENAVIAGLLHSDVRAVLATL 278
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR E L +
Sbjct: 279 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMNKLRQGERAERLRAY 337
>gi|227872476|ref|ZP_03990816.1| DNA-directed RNA polymerase sigma subunit SigA [Oribacterium sinus
F0268]
gi|227841677|gb|EEJ51967.1| DNA-directed RNA polymerase sigma subunit SigA [Oribacterium sinus
F0268]
Length = 385
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 150/238 (63%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD +G+K STY +
Sbjct: 147 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATW 206
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A++ ++ +
Sbjct: 207 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMTEEK 266
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
++ + R S++ IG+ ++ +F D +V SP+ V +++ + +L L
Sbjct: 267 VQEIMQIAREPASLETPIGEEDDSNLGDFVADTNVLSPEGNVESVMLREHIDTLLGDLKE 326
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 327 RERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 384
>gi|326384463|ref|ZP_08206143.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
gi|326196808|gb|EGD54002.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
Length = 332
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 92 GEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A +R I++P L +++K+ + R+ L G+ D E+A +G+
Sbjct: 152 TWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELALESGIPA 211
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + +V+ + D+ +L +L
Sbjct: 212 EKIADLMDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETVVIANLLHSDIRSVLSTL 271
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ +RYGL+D +P++L++IG+ F +S+E +R++E++ M KLR + L +
Sbjct: 272 DEREMQVITMRYGLDDGQPRTLDQIGRAFGLSRERVRQIEREVMGKLRQGDRAEKLRAY 330
>gi|120403441|ref|YP_953270.1| RNA polymerase sigma factor SigB [Mycobacterium vanbaalenii PYR-1]
gi|119956259|gb|ABM13264.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 329
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 89 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 149 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 209 EKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATL 268
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 269 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 327
>gi|15609847|ref|NP_217226.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Rv]
gi|15842248|ref|NP_337285.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CDC1551]
gi|31793882|ref|NP_856375.1| RNA polymerase sigma factor SigB [Mycobacterium bovis AF2122/97]
gi|121638585|ref|YP_978809.1| RNA polymerase sigma factor SigB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662551|ref|YP_001284074.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|224991077|ref|YP_002645766.1| RNA polymerase sigma factor SigB [Mycobacterium bovis BCG str.
Tokyo 172]
gi|254365367|ref|ZP_04981412.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis str.
Haarlem]
gi|289444252|ref|ZP_06433996.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T46]
gi|289448365|ref|ZP_06438109.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CPHL_A]
gi|289570886|ref|ZP_06451113.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T17]
gi|289575408|ref|ZP_06455635.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis K85]
gi|289751363|ref|ZP_06510741.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T92]
gi|289754812|ref|ZP_06514190.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
EAS054]
gi|289758838|ref|ZP_06518216.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis T85]
gi|289762881|ref|ZP_06522259.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis GM
1503]
gi|298526180|ref|ZP_07013589.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis 94_M4241A]
gi|307085405|ref|ZP_07494518.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu012]
gi|313659647|ref|ZP_07816527.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
V2475]
gi|339632722|ref|YP_004724364.1| RNA polymerase sigma factor SigB [Mycobacterium africanum GM041182]
gi|340627711|ref|YP_004746163.1| RNA polymerase sigma factor SIGB [Mycobacterium canettii CIPT
140010059]
gi|378772440|ref|YP_005172173.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|385999490|ref|YP_005917789.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CTRI-2]
gi|386005585|ref|YP_005923864.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
RGTB423]
gi|392387342|ref|YP_005308971.1| sigB [Mycobacterium tuberculosis UT205]
gi|397674619|ref|YP_006516154.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis H37Rv]
gi|424805050|ref|ZP_18230481.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis W-148]
gi|433627826|ref|YP_007261455.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140060008]
gi|433631811|ref|YP_007265439.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070010]
gi|433635772|ref|YP_007269399.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070017]
gi|433642896|ref|YP_007288655.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070008]
gi|1171103|gb|AAA86044.1| sigma factor MysB [Mycobacterium tuberculosis H37Rv]
gi|13882539|gb|AAK47099.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis CDC1551]
gi|31619476|emb|CAD94914.1| RNA POLYMERASE SIGMA FACTOR SIGB [Mycobacterium bovis AF2122/97]
gi|121494233|emb|CAL72711.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|134150880|gb|EBA42925.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis str.
Haarlem]
gi|148506703|gb|ABQ74512.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|224774192|dbj|BAH26998.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|289417171|gb|EFD14411.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T46]
gi|289421323|gb|EFD18524.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CPHL_A]
gi|289539839|gb|EFD44417.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis K85]
gi|289544640|gb|EFD48288.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T17]
gi|289691950|gb|EFD59379.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T92]
gi|289695399|gb|EFD62828.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
EAS054]
gi|289710387|gb|EFD74403.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis GM
1503]
gi|289714402|gb|EFD78414.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis T85]
gi|298495974|gb|EFI31268.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis 94_M4241A]
gi|308365051|gb|EFP53902.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu012]
gi|326904326|gb|EGE51259.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis W-148]
gi|339332078|emb|CCC27784.1| RNA polymerase sigma factor SIGB [Mycobacterium africanum GM041182]
gi|340005901|emb|CCC45067.1| RNA polymerase sigma factor SIGB [Mycobacterium canettii CIPT
140010059]
gi|341602623|emb|CCC65299.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220537|gb|AEN01168.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CTRI-2]
gi|356594761|gb|AET19990.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|378545893|emb|CCE38171.1| sigB [Mycobacterium tuberculosis UT205]
gi|380726073|gb|AFE13868.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
RGTB423]
gi|395139524|gb|AFN50683.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis H37Rv]
gi|432155432|emb|CCK52682.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140060008]
gi|432159444|emb|CCK56748.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070008]
gi|432163404|emb|CCK60812.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070010]
gi|432167365|emb|CCK64876.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070017]
gi|440582187|emb|CCG12590.1| RNA POLYMERASE SIGMA FACTOR SIGB [Mycobacterium tuberculosis
7199-99]
gi|444896247|emb|CCP45508.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Rv]
Length = 323
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 83 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 142
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 202
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 203 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 262
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR E L +
Sbjct: 263 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 321
>gi|310827637|ref|YP_003959994.1| RNA polymerase [Eubacterium limosum KIST612]
gi|308739371|gb|ADO37031.1| RNA polymerase [Eubacterium limosum KIST612]
Length = 395
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 158/269 (58%), Gaps = 5/269 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK L Q G+++R+ A ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 131 KEIGKVPLLTA-EQEMGIAKRME----AGDDEAKKELAEANLRLVVSIAKRYVGRGMSFL 185
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 186 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 245
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + + L G+ P EI K G S ++R + + S++ IG+ ++ +F
Sbjct: 246 LIRVSRQLLQELGREPTPAEIGKEMGFSEEKVREIQKIAQDPVSLETPIGEEEDSHLGDF 305
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D + +P E +K+ + +L +L RE +VL LR+GL+D R ++LEE+GK F+V
Sbjct: 306 IEDDNAPAPSEAASYALLKEQLMEVLNTLTEREEKVLRLRFGLDDGRARTLEEVGKEFNV 365
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L +L
Sbjct: 366 TRERIRQIEAKALRKLRHPSRSKKLKDYL 394
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 174/288 (60%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L ++ T+ E G+ SL WA+ A +S L+ L
Sbjct: 29 RVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSPSQLELSLHQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 89 GQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+KA++ L+ G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSATPAEIAEALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++IR R S+D ++GD + + + D +SP++ + ++ DV ++L+ L
Sbjct: 209 SQIRDYLTIARQPISLDLRVGDNQDTELRDLLEDDG-QSPEQFTTTEALRDDVNQLLKEL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R VL+LR+GLN+ + SL ++G+ +S+E +R+LE++A+ LR
Sbjct: 268 TPQQRDVLMLRFGLNNGKELSLAKVGQQLSLSRERVRQLERQALDYLR 315
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 171/295 (57%), Gaps = 1/295 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+++ V+ +A++E + + +E + + A A SE + L + +
Sbjct: 96 ADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARSAKR 155
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR+
Sbjct: 156 KMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQ 215
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A AR I++P + +++K++K ++ L + P + E+A L+ ++RS
Sbjct: 216 GITRTIANDARTIRLPIHIVEKLNKLKKTQRELRKQLNRTPTEAELAAELDLTPEQLRSL 275
Query: 419 SECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRER 477
+ R S++ ++G + + +E D S SP+ + M++++ +L E L RE+
Sbjct: 276 QQVRRKSLSLNHRVGKGEDTELMELLEDGSTLSPESRMNESMMRQEISDVLTEVLTEREK 335
Query: 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++ LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L ++L
Sbjct: 336 DIISLRYGLTTGEPHTLEEVGGIFNLSRERVRQIQTKAMRKLRRPQVASRLKNWL 390
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 172/294 (58%), Gaps = 9/294 (3%)
Query: 235 RLTIARNEAEMSKGVQV------VANLERIKTTLEKESGKAASLNC--WAQAAGVSERVL 286
R+ + +E E+ G QV +A E + L + G+ A ++ WA AA + E L
Sbjct: 85 RVPLLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNADWAAAASIPESEL 144
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
H+ G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GY
Sbjct: 145 DHHMRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGY 204
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
KFSTY +WIR++I++ +A+ AR I++P + +++KI++ ++ L+ G+ P EI +
Sbjct: 205 KFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQKLGRSPNAAEIGQ 264
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVF 466
L ++R R S+D +IGD + + + D SP++ ++Q ++ D+F
Sbjct: 265 ELELEPKQVREYLSIARQPISLDVRIGDNQDTELQDLLEDDGA-SPEDYTVQQSLRSDIF 323
Query: 467 RILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
R+L L S++++V+ LR+GL D P SL ++G+ +S+E +R+LE++A+ LR
Sbjct: 324 RMLSELTSQQQEVINLRFGLADGNPLSLAKVGQRMGISRERVRQLEQQALKHLR 377
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 155/235 (65%), Gaps = 1/235 (0%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 170 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 229
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA
Sbjct: 230 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIA 289
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 290 TRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDL 348
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 349 ENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|283795510|ref|ZP_06344663.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
gi|291077175|gb|EFE14539.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
Length = 377
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 148/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 141 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 200
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E++ +S ++
Sbjct: 201 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVAELSAALDMSEDKV 260
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ R S++ IG+ ++ +F D +V +P+ V +++ + +L L R
Sbjct: 261 MEIMQIAREPASLETPIGEEDDSNLGDFVADGNVVTPEGNVESVMLREHIDALLGDLKER 320
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 321 ERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 377
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 155/235 (65%), Gaps = 1/235 (0%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 170 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 229
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA
Sbjct: 230 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIA 289
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 290 TRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDL 348
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 349 ENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ +LE+ + KE+GK + WAQAA +S R L +A
Sbjct: 20 RVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARISRRELHSAIAS 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ + G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQARGRDATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D SP++ ++ D+ ++E L
Sbjct: 200 KQVREYLERARQPLSLDLRVGDNQDTELGDLLEDDG-PSPEDFATHSSLQFDLEILMEDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++++V+ LR+GL D +P +L +IG ++S+E +R++E++A++KLR
Sbjct: 259 TTQQKEVIALRFGLTDGQPLTLAKIGCRLNISRERVRQIEREALSKLR 306
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++K V+ + +++ ++ LE E G+ + A ++E+ L+ L G + ++I
Sbjct: 96 EVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRVAKRKMI 155
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 156 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 215
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + EIA++ +S+ ++R +
Sbjct: 216 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEIAEFLEMSVQQLRQLQQL 275
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D SP+ + M+++++ +L + L RE+ V+
Sbjct: 276 RRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVLTPREKDVI 335
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 336 SLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 388
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 185/317 (58%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLE 263
+P+ L + +P IFSA+ L+ GR L E + K VQ + L K LE
Sbjct: 1 MPTAKLDQNNDKP-IFSADMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELE 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+E G+ A+ W Q AG+S+ L++ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 EELGREATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I+K ++ L G+ EIA+ GL ++IR R S+D ++GD + + E
Sbjct: 180 IKKVQRELAQKLGRNATPTEIAEELGLEPSQIREYLSIARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D SP+ + ++ M++D+ +L L ++R+VL LR+GL D SL ++GK ++
Sbjct: 240 LEDDE-NSPETYLTQESMRQDIDSMLSELTPQQREVLSLRFGLEDGNELSLAKVGKKLNL 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ KLR
Sbjct: 299 SRERVRQLEHQALAKLR 315
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 178/293 (60%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ V+ + ++ ++ LE++ G +A+ A ++E+ L+ L G + ++I
Sbjct: 104 EVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRVAKRKMI 163
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 164 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 223
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A++ +++ ++R +
Sbjct: 224 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEAEMAEFLEMTVQQLRQLQQL 283
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D +SP+ + M+++++ +L + L SRE+ V+
Sbjct: 284 RRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVLGDVLTSREKDVI 343
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 344 SLRYGLTTSEPCTLEEVGNIFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 396
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 150/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 89 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 149 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 209 EKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATL 268
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ + L +
Sbjct: 269 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSY 327
>gi|239616750|ref|YP_002940072.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
gi|239505581|gb|ACR79068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
Length = 405
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 142/237 (59%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
REELI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +GYKFSTY +W
Sbjct: 160 AREELITANLRLVVSIAKRYIGRGLSFLDLIQEGNIGLIKAVEKFDWKKGYKFSTYATWW 219
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ K + HG+YP E+ K TG + +I
Sbjct: 220 IRQAITRAIADQARTIRVPVHMVETINKVNKVIREHLQEHGEYPTVEELGKLTGKTPEKI 279
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ S++ I + +F D S++ P+E ++ +++ + +L++L R
Sbjct: 280 EEILAASKETVSLESPISGDEESTMGDFVHDESIEKPEEAAIKMLLREQIDEVLDTLSPR 339
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL +RYGL D + K+LEE+G+ F+V++E IR++E KA+ KLR + L L
Sbjct: 340 EAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALL 396
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 175/293 (59%), Gaps = 2/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCREEL 300
E ++ V+++ E I+ L ++ + S WAQA G+S R L++ L G + ++
Sbjct: 82 EVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGKVAKRKM 141
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 142 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 201
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + P + E+A + A++R E
Sbjct: 202 TRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQKLQRNPSEQELADELKIPPAQLRQLLE 261
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES-LDSRERQV 479
R S++ ++G + + ++ D ++ P+E + M++++ +L+ L RE+ V
Sbjct: 262 LRRQSLSLNHRVGKAEDTELVDLLEDDDLQLPEEKMSEAMMRQEITDVLDDVLTQREKDV 321
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ LRYGL +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 322 ISLRYGLFTSQPYTLEEVGGMFNISRERVRQIQSKAMRKLRRPQVARRLKGWL 374
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 162/274 (59%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ +A G ++++I++
Sbjct: 68 KQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSETEVKQTVAQGKRAKQKMIEANLR 127
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 128 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 187
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 188 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQIREYLNMARQPV 247
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + E D SP+ ++ +++D+ +L L ++R+VL LR+GL
Sbjct: 248 SLDVRVGDNQDTELQEMLEDEG-PSPEYYTTQEFLRQDLNTLLAELTPQQREVLALRFGL 306
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 307 EDGNEMSLAKVGERLNLSRERVRQLEHQALAHLR 340
>gi|237803044|ref|YP_002888238.1| RNA polymerase sigma factor [Chlamydia trachomatis B/Jali20/OT]
gi|231274278|emb|CAX11073.1| RNA polymerase sigma factor [Chlamydia trachomatis B/Jali20/OT]
Length = 571
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E+ +K
Sbjct: 425 LGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEVTGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|333919424|ref|YP_004493005.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481645|gb|AEF40205.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 327
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 152/249 (61%), Gaps = 4/249 (1%)
Query: 287 KQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
K+ LA+ G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+
Sbjct: 77 KRDLAYIVRDGQKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 136
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+G+KFSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+ +
Sbjct: 137 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATEA 196
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
E+A+ +G+ +I+ + R S+D +G+ A +F D + V+ + +
Sbjct: 197 ELARESGIPQEKIQDLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSDATDAETAVITRLLH 256
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
D+ +L +LD RERQV+ RYGL D +P++L++IG++F +S+E +R++E++ MTKLR
Sbjct: 257 SDIRTVLSTLDERERQVITFRYGLEDGQPRTLDQIGRIFGLSRERVRQIEREVMTKLRQG 316
Query: 523 ETCRDLSHF 531
+ L +
Sbjct: 317 DRAEKLRGY 325
>gi|379709871|ref|YP_005265076.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
gi|374847370|emb|CCF64440.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
Length = 322
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 82 GQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+ +
Sbjct: 142 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPV 201
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + DV +L +L
Sbjct: 202 EKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAESAVIAGLLHHDVRSVLATL 261
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M+KLR E L +
Sbjct: 262 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRKGERADRLRAY 320
>gi|94971322|ref|YP_593370.1| sigma 38, RpoS [Candidatus Koribacter versatilis Ellin345]
gi|94553372|gb|ABF43296.1| RNA polymerase, sigma 70 subunit, RpoD [Candidatus Koribacter
versatilis Ellin345]
Length = 574
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 164/285 (57%), Gaps = 8/285 (2%)
Query: 256 ERIKTTLEKESGK-AASLNCWAQAAGVS-------ERVLKQHLAFGWYCREELIKSTRPL 307
E K L+K+S L Q AGVS +R + Q ++ELI++ L
Sbjct: 285 EETKKELKKQSRTLKGDLERMEQEAGVSIAELKRTQREIIQGDMDAEQAKKELIEANLRL 344
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A
Sbjct: 345 VVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQ 404
Query: 368 ARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
AR I+IP + I+K+ + + L G+ P EIAK + +A++R + + S
Sbjct: 405 ARTIRIPVHMIETINKLIRTSRQLVQELGREPSSEEIAKRMDIPVAKVRKVLKIAQEPIS 464
Query: 428 IDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLN 487
++ IG+ ++ +F DRS+ SP E V+ ++K ++L +L +RE +V+ +R+GL
Sbjct: 465 LETPIGEEEDSHLGDFIEDRSMVSPAEAVINVNLKDQTAQVLRTLTAREEKVIKMRFGLE 524
Query: 488 DHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G+ F V++E IR++E KA+ KLR R L FL
Sbjct: 525 DGSEHTLEEVGQSFAVTRERIRQIEAKALRKLRHPSRSRKLRAFL 569
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 150/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ + L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSY 317
>gi|300087894|ref|YP_003758416.1| RpoD subfamily RNA polymerase sigma-70 subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527627|gb|ADJ26095.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 502
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 146/233 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LI++ LV+ +A+ + G G+P DL+Q GN+G+++ E+FD RG+KFSTY +WIR++
Sbjct: 269 LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQA 328
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I+IP + I+K+ ++++ G+ P EIA L ++R +
Sbjct: 329 ITRAIADQARTIRIPVHMVETINKLLSISRSMSQKLGREPTPDEIAAEMELPPEKVREIA 388
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ ++ S++ IG+ ++ +F D++ P + RQ +K+ + +L+SL RER+V
Sbjct: 389 KVSQLPVSLESPIGEEEDSHLGDFIEDQNALPPPDAASRQLLKEQIDNVLDSLTPRERRV 448
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
L LR+GL D R ++LEE+GK F+V++E IR++E KA+ KLR R L +L
Sbjct: 449 LQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPTRSRKLKDYL 501
>gi|399924379|ref|ZP_10781737.1| RNA polymerase, sigma 38 subunit, RpoS [Peptoniphilus rhinitidis
1-13]
Length = 362
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 147/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+G+KFSTY +W
Sbjct: 125 AKKELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTKGFKFSTYATWW 184
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIA L + +
Sbjct: 185 IRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQDLGRDPLPEEIAAEMNLDVDRV 244
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD + SP++ +K+ + +LE+L R
Sbjct: 245 REIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEILSPQDAATFTLLKEQLNTVLETLTER 304
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL D R ++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 305 EKKVLTLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 361
>gi|218282286|ref|ZP_03488585.1| hypothetical protein EUBIFOR_01167 [Eubacterium biforme DSM 3989]
gi|218216721|gb|EEC90259.1| hypothetical protein EUBIFOR_01167 [Eubacterium biforme DSM 3989]
Length = 409
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 151/248 (60%), Gaps = 1/248 (0%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L + +A G ++ LI S LV+ +A+ Y G G+ F DL+Q GN G+++ E+FD+T+G
Sbjct: 161 LAKIIADGEEAKQTLISSNLRLVVSIAKKYVGRGMLFLDLIQEGNCGLIKAVEKFDYTKG 220
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+SI++ +A AR I+IP + I+K+ + ++ L G+ P EIA
Sbjct: 221 FKFSTYATWWIRQSITRAIADQARTIRIPVHMVETINKLTRIQRQLVQDLGRDPMPEEIA 280
Query: 406 -KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKD 464
K +S ++R + S++ IG+ ++ +F D+ SP + Q +K +
Sbjct: 281 EKMENISAEKVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDTLSPDDYTNNQLLKDE 340
Query: 465 VFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
+ +L+ L RE +VL LR+GL D R ++LEE+GK F+V++E IR++E KA+ KL++
Sbjct: 341 INAVLQGLTEREEKVLRLRFGLLDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKNPNR 400
Query: 525 CRDLSHFL 532
C+ L F+
Sbjct: 401 CKRLRDFV 408
>gi|384566591|ref|ZP_10013695.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522445|gb|EIE99640.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 343
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 103 GENAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYA 162
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ + E+A +G++
Sbjct: 163 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIAE 222
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A++ S + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 223 AKVASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAESTVISTLLQDDLRRVLATL 282
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D +P++L++IGK F +S+E +R++E++ MTKLR E L +
Sbjct: 283 DDREQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMTKLRHGERADRLRAY 341
>gi|374340623|ref|YP_005097359.1| sigma-70 family RNA polymerase sigma factor [Marinitoga piezophila
KA3]
gi|372102157|gb|AEX86061.1| RNA polymerase sigma factor, sigma-70 family [Marinitoga piezophila
KA3]
Length = 419
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 149/242 (61%), Gaps = 5/242 (2%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ELIK+ LV+ +A+ Y G G+ F DL+Q GN+G+++ +FD+ +G+KFSTY +W
Sbjct: 174 ARDELIKANLRLVISIAKKYIGRGLSFLDLIQEGNIGLIKAVNKFDYKKGFKFSTYATWW 233
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K K + HG+YP ++A+ TG + ++
Sbjct: 234 IRQAITRAIADQARTIRIPVHMVETINKFNKIIREYLQEHGEYPSPEKLAELTGKPVEKV 293
Query: 416 RSASECLRIVGSIDQKIG--DCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
R S D +G D ++ +F D ++ P E+ M+ +++++ +IL++L
Sbjct: 294 NEILLTARETISADSPLGASDEDDSTIGDFIADDTLDKPAEVAMKMLLREELEKILDTLQ 353
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD---SETCRDLSH 530
RE VL +RYGL D + K+LEE+G+ F+V++E IR++E KA+ KLR S ++LS
Sbjct: 354 PREAMVLKMRYGLLDGKVKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSAQLKELSS 413
Query: 531 FL 532
L
Sbjct: 414 ML 415
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 168/279 (60%), Gaps = 1/279 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + K VQ + L+ K L++E G A+ W+QAAG+SE L L G + ++I
Sbjct: 38 EIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGERAKRKMI 97
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GYKFSTY +WIR++I+
Sbjct: 98 EANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWWIRQAIT 157
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A+ +R I++P + +++KI++ ++ L G+ P EI + L+ ++R
Sbjct: 158 RAIAQQSRTIRLPIHITEKLNKIKREQRVLAQKLGRSPSVGEIGQELDLTPEQVREYLTM 217
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLV 481
R S+D +IGD + + E D +V SP++ ++Q +++D+ +L L ++++V+
Sbjct: 218 SRQPISLDVRIGDNQDTELQELLEDDTV-SPEDYTVQQSLRQDIRNMLTELTPQQKEVIN 276
Query: 482 LRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
LR+GL D SL ++G+ +S+E +R+LE++A+ LR
Sbjct: 277 LRFGLIDGTQLSLAKVGQRMGISRERVRQLEQQALKHLR 315
>gi|304439790|ref|ZP_07399688.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371777|gb|EFM25385.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 370
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 147/234 (62%)
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+G+KFSTY +WIR+
Sbjct: 136 ELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTKGFKFSTYATWWIRQ 195
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
+I++ +A AR I+IP + I+K+ + ++ L G+ P EIA+ + + +R
Sbjct: 196 AITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSPEEIAEEMNIDVERVREI 255
Query: 419 SECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQ 478
+ + S++ IG+ ++ +F PD ++SP++ +++ + +L++L RE++
Sbjct: 256 QKIAQEPVSLETPIGEEEDSHLGDFIPDEEIQSPQDAATFTLLREQLGDVLDTLTDREKK 315
Query: 479 VLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
VL LR+GL D R ++LEE+GK F V++E IR++E KA+ KLR R L +L
Sbjct: 316 VLTLRFGLEDGRNRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLKDYL 369
>gi|452995144|emb|CCQ93212.1| RNA polymerase major sigma-43 factor (sigma-A) [Clostridium
ultunense Esp]
Length = 360
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 150/237 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ DL+Q GN+G+++ E+FD+T+GYKFSTY +W
Sbjct: 122 AKKELAEANLRLVVSIAKKYIGRGMSLLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 181
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A R I+IP + I+K+ + ++ L G+ P EIA++ + L +I
Sbjct: 182 IRQAITRAIADQGRTIRIPVHMIENINKLVRIQRELVQELGREPYPEEIAEHMNMDLEKI 241
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + R S++ IG+ +++ +F D +++P ++ +++++ +L SL R
Sbjct: 242 KEIIKVSRKPISLETPIGEEEDSQLGDFIEDDQIETPVQVTTHTMLREELKDVLGSLTPR 301
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GLND R ++LEE+G +F V++E IR++E KA+ KLR + L FL
Sbjct: 302 EQKVLELRFGLNDGRSRTLEEVGNVFDVTRERIRQIEAKALRKLRHPSRSKKLKDFL 358
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 149/250 (59%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
E+ LK+ + G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 191 EKALKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDY 250
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G P
Sbjct: 251 TKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGHDPSPE 310
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
EIA+ + + ++R + + S++ IG+ ++ +F PD P E +K
Sbjct: 311 EIAEEMNMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDASEPSEAASFTLLK 370
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+ + +L +L RE +VL LR+G+ D R ++LEE+GK F+V++E IR++E KA+ KLR
Sbjct: 371 EQLVDVLGTLTPREEKVLKLRFGIEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLRHP 430
Query: 523 ETCRDLSHFL 532
+ L FL
Sbjct: 431 SRSKKLKDFL 440
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 177/296 (59%), Gaps = 1/296 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+++ V+ + ++ ++ LE E G+ S N A ++E+ L+ L G +
Sbjct: 82 ADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRVAKR 141
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+
Sbjct: 142 KMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQ 201
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
+I++ +A AR I++P + +++K++KA++ L + P + E+A+ +S+ ++R
Sbjct: 202 AITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMAESLEISVQQLRQL 261
Query: 419 SECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRER 477
+ R S++ ++G + + ++ D +SP+ + M+++++ +L + L RE+
Sbjct: 262 QQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVLGDVLTPREK 321
Query: 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
V+ LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 322 DVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 377
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 175/296 (59%), Gaps = 2/296 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E ++ V+ +++ E + L ++ + S A+A G+ SER L L G +
Sbjct: 67 AEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGRTAK 126
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 127 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 186
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A +R I++P + +++K++KA++ L + P + E+A+ G++ +
Sbjct: 187 QAITRTIANDSRTIRLPIHIVEKLNKLKKAQRILKQDLQRQPTEKELAEEMGITRQALHQ 246
Query: 418 ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRE 476
+ R S++ ++G + + +E D ++ P++ + M +++ +L + L RE
Sbjct: 247 LLQLKRQSLSLNHRVGKGEDTELMELLEDTNLLLPEDKMNEAMMHQEIVSVLSDVLSERE 306
Query: 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++V+VLRYGL + +LEE+GK+F +S+E +R+++ KAM KLR + R L +L
Sbjct: 307 KEVIVLRYGLASSKAHTLEEVGKIFDLSRERVRQIQTKAMRKLRRPQVARRLKGWL 362
>gi|183982017|ref|YP_001850308.1| RNA polymerase sigma factor SigB [Mycobacterium marinum M]
gi|183175343|gb|ACC40453.1| RNA polymerase sigma factor SigB [Mycobacterium marinum M]
Length = 333
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 93 GAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 152
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 153 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 212
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 213 EKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 272
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M KLR E L +
Sbjct: 273 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRSY 331
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 164/289 (56%), Gaps = 2/289 (0%)
Query: 233 GRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR + R+E + K VQ + L K L KE SL WA + E+ + Q +A
Sbjct: 28 GRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPEKEVTQIVA 87
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 88 QGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTY 147
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ P EIA L
Sbjct: 148 AYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKFGRSPTPTEIAHELELE 207
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
+IR R S+D K+GD + + E D SP+ ++ +++D+ +L
Sbjct: 208 PMQIREYLNMARQPVSLDVKVGDNQDTELQEMLEDEG-PSPEYYTTQEFLRQDLNNLLAE 266
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
L ++RQVL LR+GL D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 267 LTPQQRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|15835519|ref|NP_297278.1| RNA polymerase sigma factor [Chlamydia muridarum Nigg]
gi|270285702|ref|ZP_06195096.1| RNA polymerase sigma factor [Chlamydia muridarum Nigg]
gi|270289710|ref|ZP_06196012.1| RNA polymerase sigma factor [Chlamydia muridarum Weiss]
gi|301337097|ref|ZP_07225299.1| RNA polymerase sigma factor [Chlamydia muridarum MopnTet14]
gi|7388084|sp|P56835.1|RPOD_CHLMU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A;
AltName: Full=Sigma-66; AltName: Full=Sigma-70
gi|7190932|gb|AAF39698.1| RNA polymerase sigma factor RpoD [Chlamydia muridarum Nigg]
Length = 571
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 151/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 425 LGEELGFTPDRVREIYKIAQHPISLQAEVGDSGESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|392375796|ref|YP_003207629.1| RNA polymerase sigma factor rpoD (Sigma-80) [Candidatus
Methylomirabilis oxyfera]
gi|258593489|emb|CBE69828.1| RNA polymerase sigma factor rpoD (Sigma-80) [Candidatus
Methylomirabilis oxyfera]
Length = 654
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 163/282 (57%), Gaps = 8/282 (2%)
Query: 252 VANLER-IKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLF 310
VA ++R I+ E+ L A ER K HLA ++E++++ LV+
Sbjct: 378 VAAIQRKIRRVEEEADASGKELRSLLHAITTGER--KAHLA-----KKEMVEANLRLVIS 430
Query: 311 LARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARG 370
+A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W+R++I++ +A AR
Sbjct: 431 IAKKYTNRGLQFLDLIQEGNIGLMRAVDKFEYQRGYKFSTYATWWVRQAITRAIADQART 490
Query: 371 IKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430
I+IP + I+K+ +A + L G+ P EIA+ L + ++R + + S++
Sbjct: 491 IRIPVHMIETINKLTRASRYLVQEFGREPTPEEIAQKIDLPVDKVRKVLKIAQEPISLET 550
Query: 431 KIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHR 490
IG+ + +F D+ V SP E V+ ++ ++LE+L RE+++L LR+GL D R
Sbjct: 551 PIGEEEGSHLGDFIEDKGVISPIEAVIGMNLSGQTEQVLETLTEREQKILKLRFGLGDGR 610
Query: 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+LEE+G+ F V++E IR++E KA+ KLR R L F+
Sbjct: 611 DHTLEEVGQQFDVTRERIRQIEAKALRKLRHPTRSRKLKSFV 652
>gi|258645217|ref|ZP_05732686.1| RNA polymerase sigma factor RpoD [Dialister invisus DSM 15470]
gi|260402567|gb|EEW96114.1| RNA polymerase sigma factor RpoD [Dialister invisus DSM 15470]
Length = 388
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 139/216 (64%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ ++FD+T+G+KFSTY +WIR++I++ +A
Sbjct: 166 LVVSIAKKYLGRGLQFLDLIQEGNLGLLKAVDKFDYTKGFKFSTYATWWIRQAITRAIAD 225
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + I+K+ + + L G+ + E+AK G+S+A+IR + +
Sbjct: 226 QARTIRVPVHMVETINKLNRISRQLLQEKGREATNEELAKAMGVSVAKIREVKKIAQDPI 285
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D +P + +++ + +L L RERQVL LR+GL
Sbjct: 286 SLETPIGEKEDSHLGDFIEDHEAIAPDDAAGSILLREQIDELLRELTDRERQVLELRFGL 345
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
D RP++LEE+GK F V++E IR++E KA+TKL+ S
Sbjct: 346 KDGRPRTLEEVGKYFDVTRERIRQIEGKALTKLKKS 381
>gi|118618673|ref|YP_907005.1| RNA polymerase sigma factor SigB [Mycobacterium ulcerans Agy99]
gi|118570783|gb|ABL05534.1| RNA polymerase sigma factor SigB [Mycobacterium ulcerans Agy99]
Length = 323
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 83 GAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 142
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREIHQNLGREATDEELAAESGIPV 202
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 203 EKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 262
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M KLR E L +
Sbjct: 263 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRSY 321
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|384100772|ref|ZP_10001829.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|397737305|ref|ZP_10503977.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|419965923|ref|ZP_14481858.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|432340395|ref|ZP_19589837.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential)
[Rhodococcus jostii RHA1]
gi|383841678|gb|EID80955.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|396926744|gb|EJI93981.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|414568597|gb|EKT79355.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|430774588|gb|ELB90174.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
Length = 323
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 171/304 (56%), Gaps = 14/304 (4%)
Query: 229 LNSRGRR-LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN GR L A +E E+SK RI+ L A L + + +R L
Sbjct: 31 LNGIGRTALLTAADEVELSK---------RIEAGLYA----AHILETGKRLSPAKKRDLA 77
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+K
Sbjct: 78 TVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFK 137
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A+
Sbjct: 138 FSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAEE 197
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+G+ +I + R S+D +G+ A +F D S + V+ + DV
Sbjct: 198 SGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSDVRS 257
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L +LD RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M KLR +
Sbjct: 258 VLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDRAER 317
Query: 528 LSHF 531
L +
Sbjct: 318 LRSY 321
>gi|379029019|dbj|BAL66752.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 297
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 57 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 116
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 117 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 176
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 177 DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 236
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M+KLR E L +
Sbjct: 237 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 295
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 175/293 (59%), Gaps = 3/293 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L I+ L + G ++ WA A+ + L Q +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEVSELNQAIAV 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+++ L+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQGLGRAPTVAELSQELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D +P++ VM+ + D+ RI+ L
Sbjct: 200 KQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDTGA-TPEDFVMQTSLSYDLERIMSEL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
++++V+ LR+GL D + +L +IG++ ++S+E +R++E++A+ KLR S+
Sbjct: 259 TPQQKEVISLRFGLVDGQSLTLAKIGEVLNISRERVRQIEREALNKLRKSKAT 311
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|424852224|ref|ZP_18276621.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
gi|356666889|gb|EHI46960.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 323
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 171/304 (56%), Gaps = 14/304 (4%)
Query: 229 LNSRGRR-LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN GR L A +E E+SK RI+ L A L + + +R L
Sbjct: 31 LNGIGRTALLTAADEVELSK---------RIEAGLYA----AHILETGKRLSPAKKRDLA 77
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+K
Sbjct: 78 TVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFK 137
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A+
Sbjct: 138 FSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAEE 197
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+G+ +I + R S+D +G+ A +F D S + V+ + DV
Sbjct: 198 SGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSDVRT 257
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L +LD RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M KLR +
Sbjct: 258 VLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDRAER 317
Query: 528 LSHF 531
L +
Sbjct: 318 LRSY 321
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 182/301 (60%), Gaps = 6/301 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLA 291
R+ + +E E+ K VQ ++ L+ ++ L E G+ + + WA+A+ +++ L + +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLADSEELAKIIA 79
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 AGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTY 139
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 140 AYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELATELELT 199
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
++R E R+ S+D ++GD + + E D SP+E VM+ + D+ ++
Sbjct: 200 TKQVREYLERARLPLSLDLRVGDNQDTELGELLEDTGA-SPEEFVMQSSLATDLDLLMAD 258
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
L ++R+VL+LR+GL+D + +L +IG ++S+E +R++E++A+TKLR + D+ +
Sbjct: 259 LTPQQREVLILRFGLSDGQALTLAKIGDRLNISRERVRQIEREALTKLRKRKA--DMDQY 316
Query: 532 L 532
L
Sbjct: 317 L 317
>gi|15606649|ref|NP_214029.1| RNA polymerase sigma factor RpoD [Aquifex aeolicus VF5]
gi|2983864|gb|AAC07417.1| RNA polymerase sigma factor RpoD [Aquifex aeolicus VF5]
Length = 575
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 151/236 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ +I+S LV+ +A+ Y G+ F DL+Q GN+G+++ +++D+ +GYKFSTY +W
Sbjct: 338 AKQVMIQSNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWW 397
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI KA K L +G+ P EIA+Y + + ++
Sbjct: 398 IRQAITRAIADQARTIRIPVHMIETINKIIKASKKLFQENGREPTPEEIAEYLDIPVEKV 457
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + + S++ IGD + +F D+S+ +P+E V R+ +++ + ++L +L +
Sbjct: 458 KKVMKFSQEPISLETPIGDDDDTFLKDFIEDKSIPNPEEQVTRKLLREQLQKVLSTLSEK 517
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
ER++L+ RYGL D +LE++GK+F+V++E IR++E KA+ KLR + L F
Sbjct: 518 EREILMYRYGLVDGTEYTLEQVGKMFNVTRERIRQIENKALRKLRHPARAKYLKDF 573
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 174/312 (55%), Gaps = 29/312 (9%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
RL R+EA ++G +Q + + TL G SL WA+AAGV LK LA
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 293 G---WY-------------------CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGN 330
G W +E +IK+ LV+ +A+ Y+ G+ DL+Q G
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGT 209
Query: 331 VGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKA 390
+G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++
Sbjct: 210 LGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRK 269
Query: 391 LTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI--DQKIGDCLNAKYLEFAPDRS 448
++ G+ P +IA+ ++ ++R LR+ S+ + K+G + + E
Sbjct: 270 ISQEKGRTPTIEDIARELEMTSPQVREV--LLRVPRSVSLETKVGKEKDTELGELLETDD 327
Query: 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWI 508
V +P+E +MR+ +++D+ ++L L SRER V+ +R+GL D P SL EIG+ +S+E +
Sbjct: 328 V-TPEETLMRESLRRDLQQLLADLTSRERDVIQMRFGLGDGHPYSLAEIGRALDLSRERV 386
Query: 509 RKLEKKAMTKLR 520
R++E KA+ KLR
Sbjct: 387 RQIEAKALQKLR 398
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 165/283 (58%), Gaps = 2/283 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 35 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 94
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 95 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 154
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I++P + +++KI+K ++ L+ G+ E+A L+ A++R
Sbjct: 155 ITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQVRDYL 214
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
E R S+D ++GD + + + + +P+E ++ M++D+ R+L+ L ++RQV
Sbjct: 215 EKARHPLSLDLRVGDNQDTELGDLL-ETDCTTPEEFTLQASMRRDIDRLLDQLTEQQRQV 273
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+ LRYGL D + +L IG +S+E +R+LE++A+ LR +
Sbjct: 274 IALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTLRQA 316
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 165/283 (58%), Gaps = 2/283 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 148
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I++P + +++KI+K ++ L+ G+ E+A L+ A++R
Sbjct: 149 ITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQVRDYL 208
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
E R S+D ++GD + + + + +P+E ++ M++D+ R+L+ L ++RQV
Sbjct: 209 EKARHPLSLDLRVGDNQDTELGDLL-ETDCTTPEEFTLQASMRRDIDRLLDQLTEQQRQV 267
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+ LRYGL D + +L IG +S+E +R+LE++A+ LR +
Sbjct: 268 IALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTLRQA 310
>gi|372325327|ref|ZP_09519916.1| RpoD-like RNA polymerase sigma factor [Oenococcus kitaharae DSM
17330]
gi|366984135|gb|EHN59534.1| RpoD-like RNA polymerase sigma factor [Oenococcus kitaharae DSM
17330]
Length = 451
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 159/269 (59%), Gaps = 2/269 (0%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K A G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 183 KEIGRVSLLNA-TQEVEIAKRIEKGG-ADGQRARQELAEANLRLVVSIAKRYVGRGMHFL 240
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 241 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 300
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + ++ L G+ P EI L+ ++R + + S++ IG+ ++ +F
Sbjct: 301 LIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLETPIGEEDDSHLGDF 360
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D +SP E Q +K + +L +L RE VL LR+GL D + ++LEE+G++F V
Sbjct: 361 IEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGV 420
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L F+
Sbjct: 421 TRERIRQIEAKALRKLRHPSRSKQLKDFM 449
>gi|443673296|ref|ZP_21138364.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414111|emb|CCQ16702.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 323
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 153/251 (60%), Gaps = 4/251 (1%)
Query: 285 VLKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
V K++LA G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+F
Sbjct: 71 VKKRNLAIIVRDGSSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+ +G+KFSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+
Sbjct: 131 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 190
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQH 460
D E++ +G+++ +I + R S+D +G A +F D S + V+
Sbjct: 191 DDELSSESGIAVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDSEATSAENAVIAGL 250
Query: 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ DV +L +LD RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M KLR
Sbjct: 251 LHSDVRVVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLR 310
Query: 521 DSETCRDLSHF 531
+ L +
Sbjct: 311 QGDRAEKLRSY 321
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 173/288 (60%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+S G QV + +L K L K+ G+ A+ WAQ + L++
Sbjct: 29 RVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQK 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY
Sbjct: 89 GQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI++ ++ L+ G+ P EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSPSEIARELELQP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D ++GD + + E D SV SP + + ++ +++D+ +L+ L
Sbjct: 209 AQIREYLSVARQPISLDVRVGDNQDTELSELLEDDSV-SPDKYITQELLRQDLRMLLDEL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++QV+ LR+GL D + SL +IGK ++S+E +R+LE +A+ LR
Sbjct: 268 TPQQQQVISLRFGLEDGKEMSLAKIGKQLNLSRERVRQLEHQALAHLR 315
>gi|16752284|ref|NP_445653.1| RNA polymerase sigma factor [Chlamydophila pneumoniae AR39]
gi|7190028|gb|AAF38883.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila
pneumoniae AR39]
Length = 591
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 153/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 324 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 383
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 384 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 443
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D +V+SP E +K
Sbjct: 444 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLKD 503
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 504 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 563
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 564 RSKQLRAFLDL 574
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 180/292 (61%), Gaps = 1/292 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E ++++ V+ + ++ + +L+++ + + A A ++ER L+ +L G + ++I
Sbjct: 81 EVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRVAKRKMI 140
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 141 RSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQAIT 200
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P ++E+A+ +SL+ +R E
Sbjct: 201 RTIANDARTIRLPIHIVEKLNKLKKAQRELKQKLQRNPNELELAQALEISLSHLRQLLEL 260
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D ++ P++ + M+++++ +L + L RE+ V+
Sbjct: 261 RRRSLSLNHRVGKGEDTELMDLLEDNDLRLPEDKMNESMMRQEIWEVLSDVLTEREKDVI 320
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 321 SLRYGLASSEPYTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRLRDWL 372
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
N W+Q + ++ L ++++++S LV+ +A+ Y G+ F DL+Q G++G
Sbjct: 166 NEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLG 225
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 226 LIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLS 285
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
+ P + EIA+ +++ ++R ++ ++ S++ IG +++ +F + ++P
Sbjct: 286 QEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETP 344
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
++ V + +++D+ +L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E
Sbjct: 345 EDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 404
Query: 513 KKAMTKLR 520
KA+ KLR
Sbjct: 405 AKALRKLR 412
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 177/287 (61%), Gaps = 3/287 (1%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ L K L +E + SL WA+AA + + L + LA G + +++++
Sbjct: 48 KQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLAQGEIAKRKMVEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
L++ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY +WIR++I++ +A
Sbjct: 108 LLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAE 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+KA++ L+ + G+ P E+A+ ++ ++R E R+
Sbjct: 168 KARTIRLPIHITEKLNKIKKAQRDLSQTLGRSPSIAELAQELEITPKQVRDCLEKARLPL 227
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + E D SP++ V++ + ++ R++ L +++R+V+ LR+GL
Sbjct: 228 SLDLRLGDNYDTELGEMLEDPGA-SPEDYVIQSSLSSELERMMTHLTTQQREVIKLRFGL 286
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
D + +L IG++ ++S+E +R++E++A+T+LR +T +S +LV
Sbjct: 287 VDGQSMTLARIGEVLNISRERVRQIEREALTRLRRCKTS--MSEYLV 331
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 179/300 (59%), Gaps = 2/300 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGW 294
L A E ++++ V+ + + E + L + + S A A G+ +ER L L G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P + +++K++KA++ L S + P ++E+A+ G++
Sbjct: 184 WIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRELKQSLQRNPTEVELAEEMGINEQA 243
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLD 473
+ + R S++ ++G + + LE D ++ P+E + M +++ +L + L
Sbjct: 244 LHQLLQLKRQSLSLNHRVGKGEDTELLELLEDTNLLLPEEKMNEAMMHQEIVSVLSDVLS 303
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
RE++V++LRYGL+ +P +LEE+G++F +S+E +R+++ KAM KLR + R L +L
Sbjct: 304 EREKEVIILRYGLSSCKPHTLEEVGQIFDLSRERVRQIQTKAMRKLRRPQVARRLKSWLT 363
>gi|384450074|ref|YP_005662676.1| RNA polymerase sigma factor RpoD [Chlamydophila pneumoniae LPCoLN]
gi|269302545|gb|ACZ32645.1| RNA polymerase sigma factor RpoD [Chlamydophila pneumoniae LPCoLN]
Length = 570
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 153/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 303 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 362
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 363 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 422
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D +V+SP E +K
Sbjct: 423 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTAVESPAEATGYSMLKD 482
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 483 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 542
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 543 RSKQLRAFLDL 553
>gi|443490417|ref|YP_007368564.1| RNA polymerase sigma factor SigB [Mycobacterium liflandii 128FXT]
gi|442582914|gb|AGC62057.1| RNA polymerase sigma factor SigB [Mycobacterium liflandii 128FXT]
Length = 323
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 83 GAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 142
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREIHQNLGREATDEELAAESGIPV 202
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 203 EKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATL 262
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M KLR E L +
Sbjct: 263 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRSY 321
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 177/292 (60%), Gaps = 3/292 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L ++ L + + +L WA AA + L + +A
Sbjct: 20 RVPLLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIELVELNEAIAE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTATELAQELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+++ E R+ S+D ++GD + + E D SP++ VM+ + D+ R++ L
Sbjct: 200 KQVQECLEKARLPLSLDLRLGDNYDTELGELLEDTGA-SPEDFVMQSSLSYDLERMMAEL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
++++V+ LR+GL D + +L +IG++ ++S+E +R++E++A+TKLR S+T
Sbjct: 259 TPQQKEVIKLRFGLLDGQSLTLAKIGEILNISRERVRQIEREALTKLRKSKT 310
>gi|15618665|ref|NP_224951.1| RNA polymerase sigma factor [Chlamydophila pneumoniae CWL029]
gi|15836289|ref|NP_300813.1| RNA polymerase sigma factor [Chlamydophila pneumoniae J138]
gi|33242115|ref|NP_877056.1| RNA polymerase sigma factor [Chlamydophila pneumoniae TW-183]
gi|6831651|sp|Q9Z7F0.1|RPOD_CHLPN RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A;
AltName: Full=Sigma-66; AltName: Full=Sigma-70
gi|4377063|gb|AAD18894.1| RNA Polymerase Sigma-66 [Chlamydophila pneumoniae CWL029]
gi|8979129|dbj|BAA98964.1| RNA polymerase sigma-66 [Chlamydophila pneumoniae J138]
gi|33236625|gb|AAP98713.1| sigma factor 70 [Chlamydophila pneumoniae TW-183]
Length = 572
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 153/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D +V+SP E +K
Sbjct: 425 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|377562738|ref|ZP_09792106.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
gi|377530035|dbj|GAB37271.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
Length = 336
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 96 GEVARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 155
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 156 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPA 215
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ M DV +L +L
Sbjct: 216 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAESAVIAGLMHTDVRAVLATL 275
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR E L +
Sbjct: 276 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQGERAERLRAY 334
>gi|374307576|ref|YP_005054007.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
gi|291166412|gb|EFE28458.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
Length = 372
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +W
Sbjct: 135 AKKKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI+K +S+ +I
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPRPEEISKVMDMSVEKI 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD +P E +K+ + +L +L+ R
Sbjct: 255 REIQKISQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSLLKEQLEEVLSTLNER 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL D R ++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 315 EQKVLKLRFGLEDGRTRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
>gi|453073916|ref|ZP_21976714.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
gi|452765402|gb|EME23659.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
Length = 323
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 146/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 83 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 142
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A+ +G+
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELAEESGIPA 202
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+I + R S+D +G A +F D S + V+ + DV +L +L
Sbjct: 203 AKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDSEATSAESAVIAGLLHSDVRSVLATL 262
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ RYGL+D +P++L++IGK+F +S+E +R++E++ M KLR E L +
Sbjct: 263 DEREQQVIRFRYGLDDGQPRTLDQIGKIFGLSRERVRQIEREVMGKLRQGERADRLRSY 321
>gi|18477825|emb|CAC83730.1| sigma factor [Rhodococcus fascians D188]
Length = 323
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 153/251 (60%), Gaps = 4/251 (1%)
Query: 285 VLKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
V K++LA G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+F
Sbjct: 71 VKKRNLAIIVRDGSAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+ +G+KFSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+
Sbjct: 131 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 190
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQH 460
D E++ +G+++ +I + R S+D +G A +F D S + V+
Sbjct: 191 DEELSSESGIAVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDSEATSAENAVIAGL 250
Query: 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ DV +L +LD RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M KLR
Sbjct: 251 LHSDVRVVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLR 310
Query: 521 DSETCRDLSHF 531
+ L +
Sbjct: 311 QGDRAEKLRSY 321
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 172/290 (59%), Gaps = 3/290 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L ++ L + G+ +L WA A + L Q +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLELTELNQAIAD 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
+ +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 AEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSVAELAQELELTS 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP+E V + + D+ R++ L
Sbjct: 200 RQVREYLEKARVPLSLDIRLGDNYDTELGEMLEDPGA-SPEEFVTQSSLSGDLERLMAEL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
++R+V+ LR+GLND +L +IG++ ++S+E +R++E++A++KLR S
Sbjct: 259 TPQQREVISLRFGLNDGHALTLAKIGEILNISRERVRQIEREALSKLRKS 308
>gi|407275570|ref|ZP_11104040.1| RNA polymerase sigma factor SigB [Rhodococcus sp. P14]
gi|452960741|gb|EME66056.1| RNA polymerase sigma factor SigB [Rhodococcus ruber BKS 20-38]
Length = 320
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 80 GQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E++ +G+ +
Sbjct: 140 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELSAESGIPV 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + DV +L +L
Sbjct: 200 EKIGDLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAENAVIAGLLHSDVRSVLATL 259
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M KLR+ + L +
Sbjct: 260 DEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLREGDRAERLRAY 318
>gi|283779933|ref|YP_003370688.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pirellula staleyi
DSM 6068]
gi|283438386|gb|ADB16828.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pirellula staleyi
DSM 6068]
Length = 545
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F++ RGYKFSTY +WIR++I++ +A
Sbjct: 303 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEYARGYKFSTYATWWIRQAITRAIAD 362
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + +SK++ + L G+ P E+A+ GL+L + R + R
Sbjct: 363 QSRTIRVPVHMIDTMSKVRAVTRQLVQELGREPTPEEVARVAGLTLDDARCVLKMARQPL 422
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+DQ +GD ++ + EF D + P +Q +K + ++ L+ RER++L LRYGL
Sbjct: 423 SLDQPVGDHDDSYFGEFLADHREEDPLYDTHQQALKHQIEEAMQGLNYREREILRLRYGL 482
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+GK+F V++E +R++E KA+ KL+ R L+ FL
Sbjct: 483 TDGYAYTLEEVGKIFSVTRERVRQIETKAVRKLQQPYRNRSLTSFL 528
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 171/286 (59%), Gaps = 13/286 (4%)
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREELIKSTRPLV 308
Q+ +L+R T LE WAQA G+ +ER L+ L G + ++I+S LV
Sbjct: 98 QLQIDLQRPPTKLE-----------WAQAMGLQNERQLENRLYRGRSAKRKMIRSNLRLV 146
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I++ +A A
Sbjct: 147 VSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDA 206
Query: 369 RGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI 428
R I++P + +++K++KA++ L + P + E+A+ + +R + R S+
Sbjct: 207 RTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEKELAQALEVDAENLRQLLQLRRQSLSL 266
Query: 429 DQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVLVLRYGLN 487
+ ++G + + ++ D ++ P+E + M++D+ +L + L RE+ V+ LRYGL+
Sbjct: 267 NHRVGKGEDTELVDLLEDEDLQLPEEKMNEAMMRQDISAVLTDVLTEREKDVIALRYGLS 326
Query: 488 DHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
+P +LEE+G +F++S+E +R+++ KAM KLR + R L +L+
Sbjct: 327 TSQPYTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARRLKGWLI 372
>gi|441508327|ref|ZP_20990251.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
gi|441447355|dbj|GAC48212.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
Length = 336
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 96 GETARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 155
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 156 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPA 215
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ M DV +L +L
Sbjct: 216 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAESAVIAGLMHTDVRAVLATL 275
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR E L +
Sbjct: 276 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQGERAERLRAY 334
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 168/276 (60%), Gaps = 1/276 (0%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
++K VQ L+ IK TL K + + WA+AA +SE L++ +A G +E+++++
Sbjct: 32 LAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAKISEEELRRTMAAGKAAKEKMVEAN 91
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +
Sbjct: 92 LRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAI 151
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
A +R I++P + +++KI+KA++ L G+ E+A+ L+ ++R E R
Sbjct: 152 AEKSRTIRLPIHITEKLNKIKKAQRQLAQKQGRAATISELAQELELTPRQVREYLERARQ 211
Query: 425 VGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRY 484
S+D ++GD + + E D SP++ ++ D+ +++ L ++R+VL LR+
Sbjct: 212 PLSLDLRVGDNQDTELGELLEDTGT-SPEDYATHSSLQLDLEKLMSDLTPQQREVLALRF 270
Query: 485 GLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
GL D +P +L +IG ++S+E +R++E++A++KLR
Sbjct: 271 GLVDGQPLTLAKIGVRLNISRERVRQIEREALSKLR 306
>gi|15605346|ref|NP_220132.1| RNA polymerase sigma factor [Chlamydia trachomatis D/UW-3/CX]
gi|76789354|ref|YP_328440.1| RNA polymerase sigma factor [Chlamydia trachomatis A/HAR-13]
gi|166154830|ref|YP_001654948.1| RNA polymerase sigma factor [Chlamydia trachomatis 434/Bu]
gi|166155705|ref|YP_001653960.1| RNA polymerase sigma factor [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|255311437|ref|ZP_05354007.1| RNA polymerase sigma factor [Chlamydia trachomatis 6276]
gi|255317738|ref|ZP_05358984.1| RNA polymerase sigma factor [Chlamydia trachomatis 6276s]
gi|255348997|ref|ZP_05381004.1| RNA polymerase sigma factor [Chlamydia trachomatis 70]
gi|255503536|ref|ZP_05381926.1| RNA polymerase sigma factor [Chlamydia trachomatis 70s]
gi|255507214|ref|ZP_05382853.1| RNA polymerase sigma factor [Chlamydia trachomatis D(s)2923]
gi|301336109|ref|ZP_07224353.1| RNA polymerase sigma factor [Chlamydia trachomatis L2tet1]
gi|376282624|ref|YP_005156450.1| RNA polymerase sigma factor [Chlamydia trachomatis A2497]
gi|385240146|ref|YP_005807988.1| RNA polymerase sigma factor [Chlamydia trachomatis G/9768]
gi|385241998|ref|YP_005809838.1| RNA polymerase sigma factor [Chlamydia trachomatis E/11023]
gi|385242925|ref|YP_005810764.1| RNA polymerase sigma factor [Chlamydia trachomatis G/9301]
gi|385243822|ref|YP_005811668.1| RNA polymerase sigma factor [Chlamydia trachomatis D-EC]
gi|385244702|ref|YP_005812546.1| RNA polymerase sigma factor [Chlamydia trachomatis D-LC]
gi|385245606|ref|YP_005814429.1| RNA polymerase sigma factor [Chlamydia trachomatis E/150]
gi|385246532|ref|YP_005815354.1| RNA polymerase sigma factor [Chlamydia trachomatis G/11074]
gi|385270327|ref|YP_005813487.1| RNA polymerase sigma factor [Chlamydia trachomatis A2497]
gi|386262970|ref|YP_005816249.1| RNA polymerase sigma factor [Chlamydia trachomatis Sweden2]
gi|389858309|ref|YP_006360551.1| RNA polymerase sigma factor [Chlamydia trachomatis F/SW4]
gi|389859185|ref|YP_006361426.1| RNA polymerase sigma factor [Chlamydia trachomatis E/SW3]
gi|389860061|ref|YP_006362301.1| RNA polymerase sigma factor [Chlamydia trachomatis F/SW5]
gi|1710679|sp|P18333.2|RPOD_CHLTR RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A;
AltName: Full=Sigma-66; AltName: Full=Sigma-70
gi|144609|gb|AAA23165.1| RNA polymerase sigma-subunit [Chlamydia trachomatis]
gi|3329060|gb|AAC68218.1| RNA Polymerase Sigma-66 [Chlamydia trachomatis D/UW-3/CX]
gi|76167884|gb|AAX50892.1| RpoD [Chlamydia trachomatis A/HAR-13]
gi|165930818|emb|CAP04316.1| RNA polymerase sigma factor [Chlamydia trachomatis 434/Bu]
gi|165931693|emb|CAP07270.1| RNA polymerase sigma factor [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|289525658|emb|CBJ15139.1| RNA polymerase sigma factor [Chlamydia trachomatis Sweden2]
gi|296435222|gb|ADH17400.1| RNA polymerase sigma factor [Chlamydia trachomatis E/150]
gi|296436151|gb|ADH18325.1| RNA polymerase sigma factor [Chlamydia trachomatis G/9768]
gi|296438011|gb|ADH20172.1| RNA polymerase sigma factor [Chlamydia trachomatis G/11074]
gi|296438941|gb|ADH21094.1| RNA polymerase sigma factor [Chlamydia trachomatis E/11023]
gi|297140513|gb|ADH97271.1| RNA polymerase sigma factor [Chlamydia trachomatis G/9301]
gi|297748745|gb|ADI51291.1| RpoD [Chlamydia trachomatis D-EC]
gi|297749625|gb|ADI52303.1| RpoD [Chlamydia trachomatis D-LC]
gi|347975467|gb|AEP35488.1| RpoD [Chlamydia trachomatis A2497]
gi|371908654|emb|CAX09286.1| RNA polymerase sigma factor [Chlamydia trachomatis A2497]
gi|380249381|emb|CCE14677.1| RNA polymerase sigma factor [Chlamydia trachomatis F/SW5]
gi|380250256|emb|CCE13788.1| RNA polymerase sigma factor [Chlamydia trachomatis F/SW4]
gi|380251134|emb|CCE12899.1| RNA polymerase sigma factor [Chlamydia trachomatis E/SW3]
Length = 571
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 151/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 425 LGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 178/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D+ + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERARQPLSLDLKVGDNQDTELGELLEDKGL-SPEDYTAYSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|189219555|ref|YP_001940196.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
gi|189186413|gb|ACD83598.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
Length = 623
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 150/247 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LKQ L + E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 371 LKQWLNEAIKAKSEMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 430
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + +K L G+ P EIA
Sbjct: 431 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIA 490
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
T +S+ IR+ + + S+ ++G+ + + +F D++ ++P E+ +++ +
Sbjct: 491 DETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLREKI 550
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L +L RER V+ R+GL D P++LEE+GK F V++E IR++E KA+ K+R
Sbjct: 551 KDVLGTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHPTRL 610
Query: 526 RDLSHFL 532
R L FL
Sbjct: 611 RHLKGFL 617
>gi|444432030|ref|ZP_21227190.1| RNA polymerase sigma factor SigB [Gordonia soli NBRC 108243]
gi|443887204|dbj|GAC68911.1| RNA polymerase sigma factor SigB [Gordonia soli NBRC 108243]
Length = 340
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 150/248 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L Q + G + R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+
Sbjct: 91 RDLAQIVREGEHARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 150
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E
Sbjct: 151 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDE 210
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A +G+ +I + R S+D +G A +F D S + V+ +
Sbjct: 211 LANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLHT 270
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
DV +L +LD RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR +
Sbjct: 271 DVRSVLSTLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQGD 330
Query: 524 TCRDLSHF 531
L +
Sbjct: 331 RAERLRAY 338
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 186/322 (57%), Gaps = 16/322 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + +QP +FSA+ L+ GR + + +E E+ G QV +R+ T LEK
Sbjct: 1 MPTAKVNSNKQQP-VFSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QRMMTLLEK 54
Query: 265 ES------GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
+ G SL WA + E L + +A G + ++I++ LV+ +A+ Y+
Sbjct: 55 KEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLN 378
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 174
Query: 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNA 438
+++KI+K ++ L G+ EIA+ L A+IR R S+D ++GD +
Sbjct: 175 EKLNKIKKTQRELAQQLGRSATPGEIAQALDLEPAQIREYLSMARQPVSLDVRVGDNQDT 234
Query: 439 KYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIG 498
+ + D + SP + ++ +++D+ ++ L ++R+VL LR+GL D + SL +IG
Sbjct: 235 ELSDLLEDEGI-SPDNYITQELLRQDLNNLMAELTPQQREVLSLRFGLEDGKELSLAKIG 293
Query: 499 KLFHVSKEWIRKLEKKAMTKLR 520
+ ++S+E +R+LE +A+ +LR
Sbjct: 294 QRLNISRERVRQLEHQALAQLR 315
>gi|373455986|ref|ZP_09547801.1| RNA polymerase sigma factor RpoD [Dialister succinatiphilus YIT
11850]
gi|371934329|gb|EHO62123.1| RNA polymerase sigma factor RpoD [Dialister succinatiphilus YIT
11850]
Length = 400
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 141/217 (64%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+T+GYKFSTY +W
Sbjct: 167 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYTKGYKFSTYATWW 226
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + HG+ + E++K G+S+ +I
Sbjct: 227 IRQAITRSIADQARTIRVPVHMVETINKMNRVGRRFLQEHGREATNEELSKEMGISVEKI 286
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R A + + S++ IG+ ++ +F D+ SP++ ++ V+++L++L R
Sbjct: 287 REAKKAAQDPISLETPIGEKEDSHLGDFIEDQKTASPEDEAAATMRREQVYKMLDTLTER 346
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
E+ VL LR+G++D P++LEE+GK F V++E IR++E
Sbjct: 347 EKGVLALRFGMDDGTPRTLEEVGKHFGVTRERIRQIE 383
>gi|15827487|ref|NP_301750.1| RNA polymerase sigma factor SigB [Mycobacterium leprae TN]
gi|221229964|ref|YP_002503380.1| RNA polymerase sigma factor SigB [Mycobacterium leprae Br4923]
gi|699187|gb|AAA62952.1| u1764a [Mycobacterium leprae]
gi|13093037|emb|CAC31395.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933071|emb|CAR71109.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 319
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 146/232 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++
Sbjct: 86 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQA 145
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ + +I
Sbjct: 146 ITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPIEKINDLL 205
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
E R S+D +G A +F D S + V+ + + D+ +L +LD RE QV
Sbjct: 206 EHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQV 265
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+ LR+GL+D +P++L++IGKLF +S+E +R++E+ M KLR+ E L +
Sbjct: 266 IRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRSY 317
>gi|237804965|ref|YP_002889119.1| RNA polymerase sigma factor [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273265|emb|CAX10180.1| RNA polymerase sigma factor [Chlamydia trachomatis B/TZ1A828/OT]
Length = 571
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 151/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 425 LGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 172/290 (59%), Gaps = 3/290 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + L + G+ +L WA A + L +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLESTELNDIIAD 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAEELELTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D SP+E VM+ + D+ R++ L
Sbjct: 200 KQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGA-SPEEFVMQSSLSLDLERLMGEL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
++++V+ LR+GL D + +L IG++ ++S+E +R++E++A+TKLR S
Sbjct: 259 TPQQKEVITLRFGLIDGQALTLARIGEILNISRERVRQIEREALTKLRKS 308
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 176/292 (60%), Gaps = 1/292 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ ++ + +E +++ L +E G+ S A A G++ER L+ L + ++I
Sbjct: 115 EVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRVAKRKMI 174
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 175 RSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 234
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A +R I++P + +++K++ A++ L + P + E+A+ ++ ++++ +
Sbjct: 235 RTIANDSRTIRLPVHIVEKLNKLKGAQRDLKRKLNRNPTEAELAEALEVTPEQLQNLQQV 294
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES-LDSRERQVL 480
R S++ ++G + + ++ D +SP+ + ++++++ +L + L RE+ ++
Sbjct: 295 HRRSLSLNYRVGKDEDTELVDLLEDAETRSPESQMSETMLRQEIWDVLGNVLTEREKDII 354
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
LRYGL+ ++P +LEE+G LF++S+E +R+++ KAM KLR + L +L
Sbjct: 355 SLRYGLSSNKPCTLEEVGGLFNLSRERVRQIQSKAMRKLRRPQVAERLKGWL 406
>gi|291520418|emb|CBK75639.1| RNA polymerase, sigma 70 subunit, RpoD [Butyrivibrio fibrisolvens
16/4]
Length = 376
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 147/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 138 AKNKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLMKAVEKFDYHKGYKFSTYATWW 197
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L +G+ P EIA G+++ +
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPEEIAAAMGITVDRV 257
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ IG+ ++ +F PD +V P E +K+ + +L++L R
Sbjct: 258 HEILKISQEPVSLETPIGEEEDSHLGDFLPDENVPVPAEAATFTLLKEQLHEVLDTLTER 317
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL+LR+GL D + ++LEE+GK F+V++E IR++E KA+ KLR R L +L
Sbjct: 318 EQRVLILRFGLEDGKARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 374
>gi|327398426|ref|YP_004339295.1| RpoD subfamily RNA polymerase sigma-70 subunit [Hippea maritima DSM
10411]
gi|327181055|gb|AEA33236.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Hippea maritima
DSM 10411]
Length = 491
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 149/233 (63%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+IK+ LV+ +A+ + G+ F DL+Q GN+G+++ ++FD+ +G+KFSTY +WIR+S
Sbjct: 258 MIKANLRLVVSIAKKHLNRGLSFLDLIQEGNIGLMKSVDKFDYKKGFKFSTYATWWIRQS 317
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I+KI +A K L +GK P E+A+Y G+ +I+S
Sbjct: 318 ISRAIADQARTIRIPVHMIETINKIVRASKLLIQENGKEPTAQELAEYLGMDEEKIKSII 377
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IGD + +F D +SP + V++ ++K+ V +L +L RER+V
Sbjct: 378 KIAKEPISLETPIGDDNDTHLEDFIEDTKSESPLDYVIKSNLKEKVEEVLSTLTDRERKV 437
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
L++RYG+ D +LEE+GK+ V++E +R++E KA+ KLR + R L+ F+
Sbjct: 438 LMMRYGIGDGFDHTLEEVGKVLGVTRERVRQIEAKALRKLRHPKRSRVLASFV 490
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 174/305 (57%), Gaps = 1/305 (0%)
Query: 229 LNSRGRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN+ GR I E E+S+ +Q +++ + ++ G+ S A A + L+
Sbjct: 56 LNTIGRVPRIDHAEEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLR 115
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ G + +LI + LV+ +A+ Y G+PF DL+Q GN+G+++ E+F+ RG++
Sbjct: 116 SRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFR 175
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR+ I++ +A AR I++P + ++ +++ + L + G+ P + E+A+
Sbjct: 176 FSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEA 235
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
G+ + ++R + + S+D +G ++ + PD + P E ++ Q +++DV
Sbjct: 236 LGIKVKKLRMIQQAAALPLSLDVPVGQEGESRLGDLLPDERQEQPFEEILVQSLRQDVRS 295
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+++L ERQVL LRYGL+ R ++L E+G F++++E IR++E+ A+ KLR R
Sbjct: 296 AMQALKPIERQVLELRYGLDGQRARTLREVGDHFNLTRERIRQIERDALRKLRLGHPSRA 355
Query: 528 LSHFL 532
L+ ++
Sbjct: 356 LAQYI 360
>gi|403380483|ref|ZP_10922540.1| RpoD subfamily RNA polymerase sigma-70 subunit [Paenibacillus sp.
JC66]
Length = 376
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 138/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +AR Y G G+ DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A
Sbjct: 150 LVVSIARRYAGRGMLLLDLIQEGNMGLIKAVEKFDYTKGFKFSTYATWWIRQAITRSIAD 209
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + ++K + + L G+ P EIAK LSL ++R + +
Sbjct: 210 QARTIRIPVHMVETMNKFTRVSRQLLQEMGREPTPEEIAKEMELSLDKVREIMKISQEPV 269
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ +G+ +K +F D V +P + +K+ + +L++L RE VL LR+GL
Sbjct: 270 SLETPVGEESESKLGDFIEDHDVMAPSDSAAYTLLKEQLEDVLDTLTDREENVLRLRFGL 329
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D P++LEE+GK+F V++E IR++E KA+ KLR R L FL
Sbjct: 330 EDGNPRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSRRLKDFL 375
>gi|374608203|ref|ZP_09681002.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553735|gb|EHP80322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 319
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGRDATDEELAEESGIPA 198
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 199 EKIADLLSHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR+ E L +
Sbjct: 259 DEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERAERLRSY 317
>gi|339626307|ref|YP_004717786.1| RNA polymerase sigma factor rpoD [Chlamydia trachomatis L2c]
gi|339461188|gb|AEJ77691.1| RNA polymerase sigma factor rpoD [Chlamydia trachomatis L2c]
gi|438690552|emb|CCP49809.1| RNA polymerase sigma factor [Chlamydia trachomatis A/7249]
gi|438691637|emb|CCP48911.1| RNA polymerase sigma factor [Chlamydia trachomatis A/5291]
gi|438693010|emb|CCP48012.1| RNA polymerase sigma factor [Chlamydia trachomatis A/363]
gi|440526428|emb|CCP51912.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/8200/07]
gi|440527326|emb|CCP52810.1| RNA polymerase sigma factor [Chlamydia trachomatis D/SotonD1]
gi|440528218|emb|CCP53702.1| RNA polymerase sigma factor [Chlamydia trachomatis D/SotonD5]
gi|440529109|emb|CCP54593.1| RNA polymerase sigma factor [Chlamydia trachomatis D/SotonD6]
gi|440529999|emb|CCP55483.1| RNA polymerase sigma factor [Chlamydia trachomatis E/SotonE4]
gi|440530898|emb|CCP56382.1| RNA polymerase sigma factor [Chlamydia trachomatis E/SotonE8]
gi|440531789|emb|CCP57299.1| RNA polymerase sigma factor [Chlamydia trachomatis F/SotonF3]
gi|440532682|emb|CCP58192.1| RNA polymerase sigma factor [Chlamydia trachomatis G/SotonG1]
gi|440535366|emb|CCP60876.1| RNA polymerase sigma factor [Chlamydia trachomatis E/Bour]
gi|440536253|emb|CCP61766.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/795]
gi|440537146|emb|CCP62660.1| RNA polymerase sigma factor [Chlamydia trachomatis L1/440/LN]
gi|440538035|emb|CCP63549.1| RNA polymerase sigma factor [Chlamydia trachomatis L1/1322/p2]
gi|440538925|emb|CCP64439.1| RNA polymerase sigma factor [Chlamydia trachomatis L1/115]
gi|440539814|emb|CCP65328.1| RNA polymerase sigma factor [Chlamydia trachomatis L1/224]
gi|440540706|emb|CCP66220.1| RNA polymerase sigma factor [Chlamydia trachomatis L2/25667R]
gi|440541594|emb|CCP67108.1| RNA polymerase sigma factor [Chlamydia trachomatis L3/404/LN]
gi|440542481|emb|CCP67995.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/UCH-2]
gi|440543372|emb|CCP68886.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/Canada2]
gi|440544263|emb|CCP69777.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/LST]
gi|440545153|emb|CCP70667.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/Ams1]
gi|440546043|emb|CCP71557.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/CV204]
gi|440914305|emb|CCP90722.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/Ams2]
gi|440915195|emb|CCP91612.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/Ams3]
gi|440916086|emb|CCP92503.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/Canada1]
gi|440916981|emb|CCP93398.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/Ams4]
gi|440917871|emb|CCP94288.1| RNA polymerase sigma factor [Chlamydia trachomatis L2b/Ams5]
Length = 569
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 151/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 303 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 362
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 363 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 422
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 423 LGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKD 482
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 483 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 542
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 543 RSKQLRAFLDL 553
>gi|303229406|ref|ZP_07316196.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|303230872|ref|ZP_07317619.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|429760133|ref|ZP_19292623.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
gi|302514632|gb|EFL56627.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|302515942|gb|EFL57894.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|429178538|gb|EKY19816.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
Length = 388
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 154/257 (59%), Gaps = 6/257 (2%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 135 AGAEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 194
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 195 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 254
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKE---I 455
P EIA+ G++ +R + + S++ IG+ ++ +F D+ +P +
Sbjct: 255 PTPEEIAEGMGITAERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAVAPDDAASY 314
Query: 456 VMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515
++ Q +DVF L RE+QVL+LR+GL D +P++LEE+G+ F+V++E IR++E KA
Sbjct: 315 ILLQEQIEDVFT---CLTDREQQVLILRFGLKDGKPRTLEEVGQHFNVTRERIRQIEGKA 371
Query: 516 MTKLRDSETCRDLSHFL 532
+TKLR+ + FL
Sbjct: 372 LTKLRNRGKRDKIKDFL 388
>gi|269798255|ref|YP_003312155.1| RpoD subfamily RNA polymerase sigma-70 subunit [Veillonella parvula
DSM 2008]
gi|282850493|ref|ZP_06259872.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294792116|ref|ZP_06757264.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
gi|294793987|ref|ZP_06759124.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|269094884|gb|ACZ24875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Veillonella
parvula DSM 2008]
gi|282579986|gb|EFB85390.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294455557|gb|EFG23929.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|294457346|gb|EFG25708.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
Length = 386
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 155/257 (60%), Gaps = 6/257 (2%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 133 AGAQEDATYKDIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 192
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 193 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 252
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEI--- 455
P EIA+ G+++ +R + + S++ IG+ ++ +F D+ +P +
Sbjct: 253 PLPEEIAEGMGITVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAIAPDDAASY 312
Query: 456 VMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515
++ Q +DVF L RE+QVL+LR+GL D +P++LEE+G+ F+V++E IR++E KA
Sbjct: 313 ILLQEQIEDVFT---CLTDREQQVLILRFGLKDGKPRTLEEVGQHFNVTRERIRQIEGKA 369
Query: 516 MTKLRDSETCRDLSHFL 532
+TKLR+ + FL
Sbjct: 370 LTKLRNRGKRDKIKDFL 386
>gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070914|ref|ZP_21974141.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452759997|gb|EME18340.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
Length = 323
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 83 GQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 142
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A+ +G+
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAEESGIPA 202
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + DV +L +L
Sbjct: 203 HKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSDVRSVLGTL 262
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M KLR + L +
Sbjct: 263 DEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRVGDRAEKLRSY 321
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 170/291 (58%), Gaps = 3/291 (1%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ + LE I+ L + + +L WA+A +S LK+ + G ++++
Sbjct: 28 QEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEALKKTVEIGQQAKDKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ YRG + DL+Q G++G+ +G E+FD +GY+FSTY +WIR++I
Sbjct: 88 MRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A R I++P +N ++SKI+KA++ ++ G+ E+A+ L ++R
Sbjct: 148 TRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRPATVSEVAEKVSLPAEKVRELQR 207
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVL 480
R+ S++ +IG N + S +SP+E + +K+D+ ++L L R++ V+
Sbjct: 208 QSRLPLSLNMRIGSEQNTELGALLESDS-QSPEEYATQNLLKRDIGQLLARLTERQKDVI 266
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+R+GL+D + K+L +IG +S+E +R++E+KA+ LR T R L +
Sbjct: 267 SMRFGLDDGKKKTLAQIGHDLDISRERVRQIERKALRTLR--HTGRGLKEY 315
>gi|385241071|ref|YP_005808912.1| RNA polymerase sigma factor [Chlamydia trachomatis G/11222]
gi|296437079|gb|ADH19249.1| RNA polymerase sigma factor [Chlamydia trachomatis G/11222]
Length = 571
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 151/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 425 LGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|401679368|ref|ZP_10811299.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
gi|400219589|gb|EJO50453.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
Length = 388
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 154/257 (59%), Gaps = 6/257 (2%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 135 AGAEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 194
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 195 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 254
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKE---I 455
P EIA+ G++ +R + + S++ IG+ ++ +F D+ +P +
Sbjct: 255 PTPEEIAEGMGITAERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAVAPDDAASY 314
Query: 456 VMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515
++ Q +DVF L RE+QVL+LR+GL D +P++LEE+G+ F+V++E IR++E KA
Sbjct: 315 ILLQEQIEDVFT---CLTDREQQVLILRFGLKDGKPRTLEEVGQHFNVTRERIRQIEGKA 371
Query: 516 MTKLRDSETCRDLSHFL 532
+TKLR+ + FL
Sbjct: 372 LTKLRNRGKRDKIKDFL 388
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 167/290 (57%), Gaps = 6/290 (2%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGVS-ERVLKQHLA----FGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ ER K+ L G +++LI+
Sbjct: 128 VPLLTAAEEIDLAMKIEAGVAATEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLIE 187
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 188 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 247
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
+A AR I+IP + I+K+ + ++ L G+ P EI K GL +R +
Sbjct: 248 AIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKIS 307
Query: 423 RIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVL 482
+ S++ IG+ +++ +F D + P + +++ + ++L+ L RER+V+ L
Sbjct: 308 QEPVSLETPIGEEEDSQLGDFIEDDAAVVPPDAASFSMLQEQLSKVLDGLAERERKVIAL 367
Query: 483 RYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
R+GL D P++LEE+G+ F V++E IR++E K + KLR L +L
Sbjct: 368 RFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDYL 417
>gi|154148465|ref|YP_001406295.1| RNA polymerase sigma factor RpoD [Campylobacter hominis ATCC
BAA-381]
gi|153804474|gb|ABS51481.1| RNA polymerase sigma factor RpoD (Sigma-A) (Major vegetative
sigmafactor) [Campylobacter hominis ATCC BAA-381]
Length = 624
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 389 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQA 448
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ +AK GLS+ +I+
Sbjct: 449 ISRAIADQARTIRIPIHMIETINRINKINRKYVQENGKEPDITILAKEVGLSIDKIKQVI 508
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ +G+ + K+ +F D+ SP + +++ +K+ + ++L+ L+ RER V
Sbjct: 509 KITKEPISLEAPVGNEDDGKFGDFVEDKGTISPIDQILKNDLKEQIDKVLDQLNERERAV 568
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L+D ++LEEIGK V++E +R++E A+ KL+ + RDL ++
Sbjct: 569 IRMRFGLLDDESDRTLEEIGKELSVTRERVRQIEASAIKKLKHPKVGRDLKKYI 622
>gi|335047747|ref|ZP_08540768.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 110
str. F0139]
gi|333761555|gb|EGL39110.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 110
str. F0139]
Length = 382
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 161/270 (59%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L + ER+L +++ G +++L ++ LV+ +A+ Y G G+ F
Sbjct: 118 KEIGKIPLL------SADEERILAENMEAGDIEAKKKLAETNLRLVVSIAKRYVGRGMQF 171
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD RG+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 172 LDLIQEGNMGLMKAVEKFDFRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETIN 231
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + + L G+ P + EI+++ G+ + ++ + + S++ IG+ ++ +
Sbjct: 232 KLVRIERQLVQELGREPTNEEISEHMGIEVEKVNEIRKIAQEPVSLETPIGEEDDSHLGD 291
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F D + +P E +K+ + ++L +L RE++VL LR+GLND P++LEE+GK F
Sbjct: 292 FIEDETAIAPDEAANFSMLKEQLNQVLSTLSDREKKVLELRFGLNDGTPRTLEEVGKEFE 351
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KL+ + L FL
Sbjct: 352 VTRERIRQIEAKALRKLKHPSRSQKLKDFL 381
>gi|330444010|ref|YP_004376996.1| sigma-70 family RNA polymerase sigma factor [Chlamydophila pecorum
E58]
gi|328807120|gb|AEB41293.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila pecorum
E58]
Length = 562
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 153/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 295 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 354
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 355 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPSPEE 414
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D +V+SP E +K
Sbjct: 415 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESAFGDFLEDTAVESPAEATGYSMLKD 474
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 475 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 534
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 535 RSKQLRAFLDL 545
>gi|407474257|ref|YP_006788657.1| RNA polymerase factor sigma-70 RpoD [Clostridium acidurici 9a]
gi|407050765|gb|AFS78810.1| RNA polymerase factor sigma-70 RpoD [Clostridium acidurici 9a]
Length = 371
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 145 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYEKGFKFSTYATWWIRQAITRAIAD 204
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK L + ++R + +
Sbjct: 205 QARTIRIPVHMVETINKLIRVSRQLLQDLGREPTPEEIAKEMNLDVDKVREIQKIAQEPV 264
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD ++P E +K+ + +L++L RE++VL LR+GL
Sbjct: 265 SLETPIGEEEDSHLGDFIPDDDAQAPAEAATFTMLKEQLIDVLDTLTPREQKVLRLRFGL 324
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F V++E IR++E KA+ KLR + L FL
Sbjct: 325 DDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDFL 370
>gi|440525542|emb|CCP50793.1| RNA polymerase sigma factor [Chlamydia trachomatis K/SotonK1]
gi|440533577|emb|CCP59087.1| RNA polymerase sigma factor [Chlamydia trachomatis Ia/SotonIa1]
gi|440534471|emb|CCP59981.1| RNA polymerase sigma factor [Chlamydia trachomatis Ia/SotonIa3]
Length = 569
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 151/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 303 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 362
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 363 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 422
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 423 LGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKD 482
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 483 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 542
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 543 RSKQLRAFLDL 553
>gi|29840756|ref|NP_829862.1| RNA polymerase sigma factor [Chlamydophila caviae GPIC]
gi|29835106|gb|AAP05740.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila caviae
GPIC]
Length = 572
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D V+SP E +K
Sbjct: 425 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|343521231|ref|ZP_08758199.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 393
str. F0440]
gi|343396437|gb|EGV08974.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 393
str. F0440]
Length = 382
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 161/270 (59%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L + ER+L +++ G +++L ++ LV+ +A+ Y G G+ F
Sbjct: 118 KEIGKIPLL------SADEERILAENMETGDIEAKKKLAETNLRLVVSIAKRYVGRGMQF 171
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD RG+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 172 LDLIQEGNMGLMKAVEKFDFRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETIN 231
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + + L G+ P + EI+++ G+ + ++ + + S++ IG+ ++ +
Sbjct: 232 KLVRIERQLVQELGREPTNEEISEHMGIEVDKVNEIRKIAQEPVSLETPIGEEDDSHLGD 291
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F D + +P E +K+ + ++L +L RE++VL LR+GLND P++LEE+GK F
Sbjct: 292 FIEDETAIAPDEAANFSMLKEQLNQVLSTLSDREKKVLELRFGLNDGTPRTLEEVGKEFE 351
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KL+ + L FL
Sbjct: 352 VTRERIRQIEAKALRKLKHPSRSQKLKDFL 381
>gi|160947542|ref|ZP_02094709.1| hypothetical protein PEPMIC_01477 [Parvimonas micra ATCC 33270]
gi|158446676|gb|EDP23671.1| RNA polymerase sigma factor RpoD [Parvimonas micra ATCC 33270]
Length = 382
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 161/270 (59%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L + ER+L +++ G +++L ++ LV+ +A+ Y G G+ F
Sbjct: 118 KEIGKIPLL------SADEERILAENMEAGDIEAKKKLAETNLRLVVSIAKRYVGRGMQF 171
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD RG+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 172 LDLIQEGNMGLMKAVEKFDFRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETIN 231
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + + L G+ P + EI+++ G+ + ++ + + S++ IG+ ++ +
Sbjct: 232 KLVRIERQLVQELGREPTNEEISEHMGIEVDKVNEIRKIAQEPVSLETPIGEEDDSHLGD 291
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F D + +P E +K+ + ++L +L RE++VL LR+GLND P++LEE+GK F
Sbjct: 292 FIEDETAIAPDEAANFSMLKEQLNQVLSTLSDREKKVLELRFGLNDGTPRTLEEVGKEFE 351
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KL+ + L FL
Sbjct: 352 VTRERIRQIEAKALRKLKHPSRSQKLKDFL 381
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 174/315 (55%), Gaps = 15/315 (4%)
Query: 220 PTIFSAERALNSR-------------GRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKE 265
PT+ + LN+R GR + R E K VQ + L K L K+
Sbjct: 2 PTVNTQTENLNTRFTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKK 61
Query: 266 SGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDL 325
+ ++ WA SE ++Q +A G ++++I++ LV+ +A+ Y+ + F DL
Sbjct: 62 LHREPDMSEWADVVQQSETEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 326 LQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQ 385
+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+ R I++P + +++KI+
Sbjct: 122 IQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIK 181
Query: 386 KARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAP 445
K ++ L + G+ P EIAK L A+IR R S+D K+GD + + E
Sbjct: 182 KVQRELAQTLGRSPTPAEIAKELELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEMLE 241
Query: 446 DRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSK 505
D S SP+ ++ +++D+ +L L ++R+VL LR+GL D SL ++G+ ++S+
Sbjct: 242 D-SGPSPEYYTNQEFLRQDLNNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSR 300
Query: 506 EWIRKLEKKAMTKLR 520
E +R+LE +A+ LR
Sbjct: 301 ERVRQLEHQALAHLR 315
>gi|62185569|ref|YP_220354.1| RNA polymerase sigma factor [Chlamydophila abortus S26/3]
gi|424825613|ref|ZP_18250600.1| RNA polymerase sigma factor [Chlamydophila abortus LLG]
gi|62148636|emb|CAH64409.1| major sigma factor [Chlamydophila abortus S26/3]
gi|333410712|gb|EGK69699.1| RNA polymerase sigma factor [Chlamydophila abortus LLG]
Length = 571
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D V+SP E +K
Sbjct: 425 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|169824520|ref|YP_001692131.1| RNA polymerase sigma A factor [Finegoldia magna ATCC 29328]
gi|302380672|ref|ZP_07269137.1| RNA polymerase sigma factor RpoD [Finegoldia magna ACS-171-V-Col3]
gi|303233690|ref|ZP_07320344.1| RNA polymerase sigma factor RpoD [Finegoldia magna BVS033A4]
gi|417926538|ref|ZP_12569936.1| RNA polymerase sigma factor RpoD [Finegoldia magna
SY403409CC001050417]
gi|167831325|dbj|BAG08241.1| RNA polymerase sigma A factor [Finegoldia magna ATCC 29328]
gi|302311615|gb|EFK93631.1| RNA polymerase sigma factor RpoD [Finegoldia magna ACS-171-V-Col3]
gi|302495124|gb|EFL54876.1| RNA polymerase sigma factor RpoD [Finegoldia magna BVS033A4]
gi|341589053|gb|EGS32420.1| RNA polymerase sigma factor RpoD [Finegoldia magna
SY403409CC001050417]
Length = 388
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+TRG+KFSTY +W
Sbjct: 151 AKKKLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTRGFKFSTYATWW 210
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+++ + + L G+ P + EIAK G+ + ++
Sbjct: 211 IRQAITRAIADQARTIRIPVHMVETINRLVRIERQLLQDLGRDPTNEEIAKEMGIEVEKV 270
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D + +P E +++++ IL +L+ R
Sbjct: 271 REVRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAIAPDEAANFTMLREELEGILNTLNER 330
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL LR+GL D P++LEE+GK F V++E IR++E KA+ KL+ + L FL
Sbjct: 331 ERKVLALRFGLVDGTPRTLEEVGKDFDVTRERIRQIEAKALRKLKHPSRSQKLKDFL 387
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 177/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTGL-SPEDYTAYSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 172/300 (57%), Gaps = 7/300 (2%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L E ++ + VQ + LE +K L + G+ S+ W +AA + L+ L G
Sbjct: 36 LLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAADLEIAELQTLLEKGHK 95
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++I + LV+ +A+ YR + DL+Q G +G+ + AE++D RG++FSTY +W
Sbjct: 96 AKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEKYDPQRGFRFSTYAYWW 155
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +A R I++P L ++KI++ ++ L+ S G+ P E+A+ L+ ++
Sbjct: 156 IRQGITRAIAEQGRTIRLPIHLTEALNKIKRTQRELSQSLGRSPTTAEVAQALSLTPEKV 215
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEF--APDRSVKSPKEIVMRQHMKKDVFRILESLD 473
+ C SID KIGD ++ ++F APD SP++ V + + + + +L +L
Sbjct: 216 QQYLHCAHHTLSIDLKIGDDQDSSIVDFIEAPD---SSPEKFVSDKTLSESLQMLLATLT 272
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
++R+VL LRYGL D R +L +G+ +S+E +R+L+ A+++L+ + +++ +LV
Sbjct: 273 PQQREVLTLRYGLIDGRELTLAAVGRRMDISRERVRQLQNAALSQLQKRKP--EIADYLV 330
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 183/300 (61%), Gaps = 5/300 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+ K LE+++ S WA+AA V+ L++ +
Sbjct: 20 RVPLLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEVAKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ + G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQIAQQKGRSATIAELAEELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + E D S +SP++ ++ D+ R+++ L
Sbjct: 200 RQVREYLERARQPLSLDLRVGDNNDTELGELLED-SGQSPEDYATYSSLQFDLDRLMDDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++R+V+ LR+GL D +P +L +IG L ++S+E +R++E++A+ KLR ++ D+S ++
Sbjct: 259 TPQQREVISLRFGLTDGKPLTLSKIGVLLNISRERVRQIEREALAKLRKRKS--DMSEYI 316
>gi|407459825|ref|YP_006737928.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci M56]
gi|405785764|gb|AFS24509.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci M56]
Length = 571
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D V+SP E +K
Sbjct: 425 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 162/278 (58%), Gaps = 6/278 (2%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE------RVLKQHLAFGWYCREELIK 302
V ++ E + ++ E+G AAS G+ E R L + + G +++LI
Sbjct: 164 VDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRAEQRRLMRIESVGLDAKQQLIS 223
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 224 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 283
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
+A AR I+IP + I+K+ + ++ L G+ P EI G+S +R +
Sbjct: 284 AIADQARTIRIPVHMVETINKLIRVQRQLLQDFGRDPTPEEIGSEMGMSPDRVREIQKIS 343
Query: 423 RIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVL 482
+ S++ IG+ +++ +F D + +P + +++ + ++L+SL RER+V+
Sbjct: 344 QEPVSLETPIGEEEDSQLGDFIEDSTAVAPPDAASDSMLREQLEQVLDSLADRERKVIKF 403
Query: 483 RYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
R+GL D P++LEE+GK F V++E IR++E K + KLR
Sbjct: 404 RFGLEDGHPRTLEEVGKEFGVTRERIRQIESKTLAKLR 441
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 173/293 (59%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + I+ L +E G + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQLENRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L G+ P +IE+A+ + ++R +
Sbjct: 217 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQRLGRNPNEIEMAEALEIPPQQLRQLQQL 276
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D +SP+ + M+++++ +L + L RE+ V+
Sbjct: 277 RRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNESMMRQEIWEVLGDVLTPREKDVI 336
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 337 SLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 389
>gi|329943340|ref|ZP_08292114.1| RNA polymerase sigma factor rpoD [Chlamydophila psittaci Cal10]
gi|332287916|ref|YP_004422817.1| RNA polymerase sigma factor [Chlamydophila psittaci 6BC]
gi|384452071|ref|YP_005664669.1| RNA polymerase sigma factor [Chlamydophila psittaci 01DC11]
gi|384453045|ref|YP_005665642.1| RNA polymerase sigma factor [Chlamydophila psittaci 08DC60]
gi|384454024|ref|YP_005666620.1| RNA polymerase sigma factor [Chlamydophila psittaci C19/98]
gi|384455003|ref|YP_005667598.1| RNA polymerase sigma factor [Chlamydophila psittaci 02DC15]
gi|392377146|ref|YP_004064924.1| major sigma factor [Chlamydophila psittaci RD1]
gi|406593954|ref|YP_006741133.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci NJ1]
gi|407454584|ref|YP_006733692.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci 84/55]
gi|407455844|ref|YP_006734735.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci GR9]
gi|407457270|ref|YP_006735843.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci VS225]
gi|407458582|ref|YP_006736887.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci WS/RT/E30]
gi|407461198|ref|YP_006738973.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci WC]
gi|449071648|ref|YP_007438728.1| RNA polymerase sigma factor [Chlamydophila psittaci Mat116]
gi|313848489|emb|CBY17493.1| major sigma factor [Chlamydophila psittaci RD1]
gi|325507028|gb|ADZ18666.1| RNA polymerase sigma factor [Chlamydophila psittaci 6BC]
gi|328814887|gb|EGF84877.1| RNA polymerase sigma factor rpoD [Chlamydophila psittaci Cal10]
gi|334692805|gb|AEG86024.1| RNA polymerase sigma factor [Chlamydophila psittaci C19/98]
gi|334693781|gb|AEG86999.1| RNA polymerase sigma factor [Chlamydophila psittaci 01DC11]
gi|334694760|gb|AEG87977.1| RNA polymerase sigma factor [Chlamydophila psittaci 02DC15]
gi|334695734|gb|AEG88950.1| RNA polymerase sigma factor [Chlamydophila psittaci 08DC60]
gi|405781343|gb|AFS20093.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci 84/55]
gi|405782387|gb|AFS21136.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci GR9]
gi|405784531|gb|AFS23278.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci VS225]
gi|405785303|gb|AFS24049.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci WS/RT/E30]
gi|405786770|gb|AFS25514.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci WC]
gi|405789826|gb|AFS28568.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci NJ1]
gi|449040156|gb|AGE75580.1| RNA polymerase sigma factor [Chlamydophila psittaci Mat116]
Length = 571
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D V+SP E +K
Sbjct: 425 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|389844090|ref|YP_006346170.1| sigma-70 family RNA polymerase sigma factor [Mesotoga prima
MesG1.Ag.4.2]
gi|387858836|gb|AFK06927.1| RNA polymerase sigma factor, sigma-70 family [Mesotoga prima
MesG1.Ag.4.2]
Length = 416
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 142/237 (59%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+EELI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +GYKFSTY +W
Sbjct: 171 AKEELITANLRLVVSIAKRYIGRGLTFLDLIQEGNIGLIKAVEKFDWKKGYKFSTYATWW 230
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ K + HG+YP E+ TG + +I
Sbjct: 231 IRQAITRAIADQARTIRVPVHMVETINKLNKVIREHLQDHGEYPTIEELGNLTGKTPEKI 290
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ S++ I + +F D S++ P+E M+ +++ + +IL++L R
Sbjct: 291 EEILAASKETVSLESPISGDEESTMGDFIHDDSMEQPEEAAMKMLLREQIDQILDTLSPR 350
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL +RYGL D + K+LEE+G+ F+V++E IR++E KA+ KLR + L L
Sbjct: 351 EAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALL 407
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 173/289 (59%), Gaps = 5/289 (1%)
Query: 235 RLTIARNEAEMSKGVQV---VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E+ G QV +A LE K TLEK+ + + WA+A G S LK +
Sbjct: 36 RVPLLTHEQEIVFGKQVQQMMAFLE-AKETLEKKLKREPTEEEWAEAVGHSVGDLKNLVK 94
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY
Sbjct: 95 IGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMRGYKFSTY 154
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A+ AR I++P + +++KI+K ++ LT + G+ P EI + L
Sbjct: 155 AYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQNLGRSPSPSEIGEALELE 214
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
A+IR R S+D ++GD + + + D SP+ + ++ +++D+ +L
Sbjct: 215 PAQIREYLLMARQPVSLDLRVGDNQDTELQDLLEDADA-SPENYITQELLREDLESLLAE 273
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
L +++R V++LR+GL D R SL ++G+ +S+E +R+LE +A+ LR
Sbjct: 274 LTTQQRDVIILRFGLKDGRELSLAKVGEKLSLSRERVRQLEHQALAHLR 322
>gi|89897819|ref|YP_514929.1| RNA polymerase sigma factor [Chlamydophila felis Fe/C-56]
gi|89331191|dbj|BAE80784.1| DNA-directed RNA polymerase sigma 70 [Chlamydophila felis Fe/C-56]
Length = 570
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 303 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 362
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 363 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 422
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D V+SP E +K
Sbjct: 423 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKD 482
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 483 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 542
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 543 RSKQLRAFLDL 553
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 187/318 (58%), Gaps = 8/318 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + N K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMNFLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK ++ W++ + ++ L Q L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 ADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
KI+K ++ L+ + G+ EIA+ + ++IR R S+D ++GD + + E
Sbjct: 179 KIKKTQRELSQTLGRSATPSEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSE 238
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
D+ V SP + ++ +++D+ ++ L ++R VL LR+GL D + SL +IGK +
Sbjct: 239 LLEDQGV-SPDLYITQELLRQDLRNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRMN 297
Query: 503 VSKEWIRKLEKKAMTKLR 520
+S+E +R+LE +A+ +LR
Sbjct: 298 ISRERVRQLEHQALAQLR 315
>gi|57234646|ref|YP_181295.1| RNA polymerase sigma factor RpoD [Dehalococcoides ethenogenes 195]
gi|57225094|gb|AAW40151.1| RNA polymerase sigma factor RpoD [Dehalococcoides ethenogenes 195]
Length = 520
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 145/233 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LI++ LV+ +A+ + G G+P DL+Q GN+G+++ E+FD RG+KFSTY +WIR++
Sbjct: 287 LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQA 346
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I+IP + I+K+ + L+ G+ P EIA L ++R +
Sbjct: 347 ITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIAVEMDLPPEKVREIA 406
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ ++ S++ IG+ ++ +F D++ +P + RQ +K+ + +L SL RER+V
Sbjct: 407 KVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVLGSLTPRERRV 466
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
L LR+GL D R ++LEE+GK F+V++E IR++E KA+ KLR R L +L
Sbjct: 467 LQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 519
>gi|520418|gb|AAA50747.1| major sigma factor [Chlamydophila psittaci 6BC]
Length = 571
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D V+SP E +K
Sbjct: 425 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|406592909|ref|YP_006740089.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci CP3]
gi|406594705|ref|YP_006742168.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci MN]
gi|410858929|ref|YP_006974869.1| major sigma factor [Chlamydia psittaci 01DC12]
gi|405783137|gb|AFS21885.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci MN]
gi|405788781|gb|AFS27524.1| RNA polymerase sigma factor rpoD [Chlamydia psittaci CP3]
gi|410811824|emb|CCO02479.1| major sigma factor [Chlamydia psittaci 01DC12]
Length = 571
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D V+SP E +K
Sbjct: 425 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 175/287 (60%), Gaps = 3/287 (1%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ L K L +E + SL WA+AA + + L + L G + +++++
Sbjct: 48 KQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLGQGEIAKRKMVEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY +WIR++I++ +A
Sbjct: 108 LVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAE 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+KA++ L+ + G+ P E+A+ ++ ++R E R+
Sbjct: 168 KARTIRLPIHITEKLNKIKKAQRYLSQTLGRSPSIAELAQELEITPKQVRDCLEKARLPL 227
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + E D SP++ V++ + ++ R++ L ++R+V+ LR+GL
Sbjct: 228 SLDLRLGDNYDTELGEMLEDPGA-SPEDYVIQSSLSSELDRMMTHLTPQQREVIKLRFGL 286
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
D + +L IG++ ++S+E +R++E++A+T+LR +T +S +LV
Sbjct: 287 VDGQSMTLARIGEVLNISRERVRQIEREALTRLRRCKTS--MSEYLV 331
>gi|118586868|ref|ZP_01544302.1| DNA-directed RNA polymerase RpoD, sigma subunit, Sigma-42
[Oenococcus oeni ATCC BAA-1163]
gi|71466858|emb|CAH41003.1| rpoD protein [Oenococcus oeni]
gi|118432700|gb|EAV39432.1| DNA-directed RNA polymerase RpoD, sigma subunit, Sigma-42
[Oenococcus oeni ATCC BAA-1163]
Length = 458
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 159/269 (59%), Gaps = 2/269 (0%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 307
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + ++ L G+ P EI L+ ++R + + S++ IG+ ++ +F
Sbjct: 308 LIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLETPIGEEDDSHLGDF 367
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D +SP E Q +K + +L +L RE VL LR+GL D + ++LEE+G++F V
Sbjct: 368 IEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGV 427
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L F+
Sbjct: 428 TRERIRQIEAKALRKLRHPSRSKQLKDFM 456
>gi|116491026|ref|YP_810570.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni PSU-1]
gi|290890507|ref|ZP_06553582.1| hypothetical protein AWRIB429_0972 [Oenococcus oeni AWRIB429]
gi|419758826|ref|ZP_14285138.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB304]
gi|419857734|ref|ZP_14380437.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB202]
gi|419859523|ref|ZP_14382177.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|421185425|ref|ZP_15642836.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB318]
gi|421188904|ref|ZP_15646236.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB419]
gi|421193631|ref|ZP_15650877.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB553]
gi|421195329|ref|ZP_15652537.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB568]
gi|421197442|ref|ZP_15654617.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB576]
gi|116091751|gb|ABJ56905.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni PSU-1]
gi|290479903|gb|EFD88552.1| hypothetical protein AWRIB429_0972 [Oenococcus oeni AWRIB429]
gi|399904281|gb|EJN91737.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB304]
gi|399964237|gb|EJN98891.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB419]
gi|399964606|gb|EJN99247.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB318]
gi|399971790|gb|EJO06029.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB553]
gi|399975051|gb|EJO09119.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB576]
gi|399975754|gb|EJO09789.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB568]
gi|410496540|gb|EKP88023.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|410497205|gb|EKP88680.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB202]
Length = 458
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 159/269 (59%), Gaps = 2/269 (0%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 307
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + ++ L G+ P EI L+ ++R + + S++ IG+ ++ +F
Sbjct: 308 LIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLETPIGEENDSHLGDF 367
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D +SP E Q +K + +L +L RE VL LR+GL D + ++LEE+G++F V
Sbjct: 368 IEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGV 427
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L F+
Sbjct: 428 TRERIRQIEAKALRKLRHPSRSKQLKDFM 456
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE+E G+ S + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A +S+ ++R +
Sbjct: 217 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMATALEISIQQLRQLQQL 276
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D +SP+ + M+++++ +L + L RE+ V+
Sbjct: 277 RRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVLGDVLTPREKDVI 336
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 337 SLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 389
>gi|338734243|ref|YP_004672716.1| rNA polymerase sigma factor rpoD [Simkania negevensis Z]
gi|336483626|emb|CCB90225.1| rNA polymerase sigma factor rpoD [Simkania negevensis Z]
Length = 554
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 149/249 (59%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + + E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 300 RMLQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 359
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L G+ P E
Sbjct: 360 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGREPTPEE 419
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A GL+ +R + + S+ ++GD +++ +F D +++SP E +K
Sbjct: 420 LATELGLTPERVREIYKIAQHPISLQAEVGDSGESQFGDFLEDTTIESPDEATGYSILKD 479
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L +L RER VL+ R+GL D +PK+LEE+G F V++E +R++E KA+ K+R
Sbjct: 480 KMNEVLSTLTDRERTVLIERFGLLDGKPKTLEEVGVRFKVTRERVRQIEAKALRKMRHPT 539
Query: 524 TCRDLSHFL 532
+ L FL
Sbjct: 540 RSKQLQAFL 548
>gi|333991092|ref|YP_004523706.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487060|gb|AEF36452.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 321
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 81 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+
Sbjct: 141 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQQLGREATDEELAAESGIPA 200
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I E R S+D +G A +F D S + V+ + + D+ +L +L
Sbjct: 201 EKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDSEAMSAENAVISELLHTDIRSVLATL 260
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE QV+ LR+GL+D +P++L++IGKLF +S+E +R++E++ M KLR E L +
Sbjct: 261 DEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHGERADRLRSY 319
>gi|417001145|ref|ZP_11941059.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
gi|333975628|gb|EGL76507.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
Length = 386
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 155/257 (60%), Gaps = 6/257 (2%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 133 AGSQEDATYKDIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 192
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 193 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 252
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEI--- 455
P EIA+ G+++ +R + + S++ IG+ ++ +F D+ +P +
Sbjct: 253 PLPEEIAEGMGITVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAIAPDDAASY 312
Query: 456 VMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515
++ Q +DVF L RE+QVL+LR+GL D +P++LEE+G+ F+V++E IR++E KA
Sbjct: 313 ILLQEQIEDVFT---CLTDREQQVLILRFGLKDGKPRTLEEVGQHFNVTRERIRQIEGKA 369
Query: 516 MTKLRDSETCRDLSHFL 532
+TKLR+ + FL
Sbjct: 370 LTKLRNRGKRDKIKDFL 386
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 157/264 (59%), Gaps = 2/264 (0%)
Query: 271 SLNCWAQAAGVSERVLKQHLAF--GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
S+ A+ A +E K A G +++L ++ LV+ +A+ Y G G+ F DL+Q
Sbjct: 125 SIEAEAELAETNEMTPKIDAAIIRGENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQE 184
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
GN+G+++ E+FDHT+G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + +
Sbjct: 185 GNMGLIKAVEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQ 244
Query: 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRS 448
+ L G+ P EI + L+ ++R + + S++ IG+ ++ +F D
Sbjct: 245 RQLLQDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSE 304
Query: 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWI 508
+SP + + +K+ + +L++L RE VL LR+GL+D R ++LEE+GK+F V++E I
Sbjct: 305 AQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 364
Query: 509 RKLEKKAMTKLRDSETCRDLSHFL 532
R++E KA+ KLR + L FL
Sbjct: 365 RQIEAKALRKLRHPSRSKRLKDFL 388
>gi|384451087|ref|YP_005663687.1| transcription initiation factor sigma 70 [Chlamydophila psittaci
6BC]
gi|328915181|gb|AEB56014.1| transcription initiation factor sigma 70 [Chlamydophila psittaci
6BC]
Length = 561
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 295 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 354
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 355 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 414
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D V+SP E +K
Sbjct: 415 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKD 474
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 475 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 534
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 535 RSKQLRAFLDL 545
>gi|47679387|gb|AAT36674.1| DNA-directed RNA polymerase sigma A subunit [Oenococcus oeni PSU-1]
Length = 465
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 159/269 (59%), Gaps = 2/269 (0%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 197 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 254
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 255 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 314
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + ++ L G+ P EI L+ ++R + + S++ IG+ ++ +F
Sbjct: 315 LIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLETPIGEENDSHLGDF 374
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D +SP E Q +K + +L +L RE VL LR+GL D + ++LEE+G++F V
Sbjct: 375 IEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGV 434
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L F+
Sbjct: 435 TRERIRQIEAKALRKLRHPSRSKQLKDFM 463
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 177/296 (59%), Gaps = 2/296 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E+ + L +E + WAQA G S+R + L G +
Sbjct: 79 AQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAK 138
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 139 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 198
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A AR I++P + +++K++KA++ L + P + E+A+ ++ ++R
Sbjct: 199 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKELAQELEMTPPQLRQ 258
Query: 418 ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRE 476
+ R S++ ++G + + ++ D+ ++ P+E + ++ ++ +L + L RE
Sbjct: 259 LLQLRRQSLSLNHRVGKGEDTELVDLLEDQDLQLPEEQMNEGMLRNEISAVLSDVLTERE 318
Query: 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ V+ LRYGL+ +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 319 KDVISLRYGLSTSQPHTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 374
>gi|73748391|ref|YP_307630.1| RNA polymerase, sigma factor [Dehalococcoides sp. CBDB1]
gi|147669171|ref|YP_001213989.1| RpoD family RNA polymerase sigma factor [Dehalococcoides sp. BAV1]
gi|289432439|ref|YP_003462312.1| RpoD subfamily RNA polymerase sigma-70 subunit [Dehalococcoides sp.
GT]
gi|452203396|ref|YP_007483529.1| RNA polymerase sigma factor RpoD [Dehalococcoides mccartyi DCMB5]
gi|452204832|ref|YP_007484961.1| RNA polymerase sigma factor RpoD [Dehalococcoides mccartyi BTF08]
gi|73660107|emb|CAI82714.1| RNA polymerase, sigma factor [Dehalococcoides sp. CBDB1]
gi|146270119|gb|ABQ17111.1| RNA polymerase, sigma 70 subunit, RpoD family [Dehalococcoides sp.
BAV1]
gi|288946159|gb|ADC73856.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dehalococcoides
sp. GT]
gi|452110455|gb|AGG06187.1| RNA polymerase sigma factor RpoD [Dehalococcoides mccartyi DCMB5]
gi|452111888|gb|AGG07619.1| RNA polymerase sigma factor RpoD [Dehalococcoides mccartyi BTF08]
Length = 520
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 145/233 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LI++ LV+ +A+ + G G+P DL+Q GN+G+++ E+FD RG+KFSTY +WIR++
Sbjct: 287 LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQA 346
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I+IP + I+K+ + L+ G+ P EIA L ++R +
Sbjct: 347 ITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIALEMDLPPEKVREIA 406
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ ++ S++ IG+ ++ +F D++ +P + RQ +K+ + +L SL RER+V
Sbjct: 407 KVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVLGSLTPRERRV 466
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
L LR+GL D R ++LEE+GK F+V++E IR++E KA+ KLR R L +L
Sbjct: 467 LQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 519
>gi|297588502|ref|ZP_06947145.1| DNA-directed RNA polymerase sigma subunit RpoD [Finegoldia magna
ATCC 53516]
gi|297573875|gb|EFH92596.1| DNA-directed RNA polymerase sigma subunit RpoD [Finegoldia magna
ATCC 53516]
Length = 389
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+TRG+KFSTY +W
Sbjct: 152 AKKKLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTRGFKFSTYATWW 211
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+++ + + L G+ P + EIAK G+ + ++
Sbjct: 212 IRQAITRAIADQARTIRIPVHMVETINRLVRIERQLLQDLGRDPTNEEIAKEMGIEVEKV 271
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D + +P E +++++ IL +L+ R
Sbjct: 272 REVRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAIAPDEAANFTMLREELEGILNTLNER 331
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL LR+GL D P++LEE+GK F V++E IR++E KA+ KL+ + L FL
Sbjct: 332 ERKVLALRFGLVDGTPRTLEEVGKDFDVTRERIRQIEAKALRKLKHPSRSQKLKDFL 388
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 161/274 (58%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESEVKQTVQQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIA+ L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPAEIAQELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D K+GD + + E D +SP+ + ++ +++D+ +L L ++R+VL LR+GL
Sbjct: 223 SLDVKVGDNQDTELQEMLEDEG-QSPEYYMTQEFLRQDLNNLLSELTPQQREVLALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 EDGNEMSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|291458966|ref|ZP_06598356.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418220|gb|EFE91939.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
Length = 388
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD +G+K STY +W
Sbjct: 151 AKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATWW 210
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A++ +S ++
Sbjct: 211 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMSEDKV 270
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + R S++ IG+ ++ +F D +V +P+ V +++ + +L L R
Sbjct: 271 QEIMQIAREPASLETPIGEEDDSNLGDFVADANVLTPESNVEAVMLREHIDSLLGDLKER 330
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ERQV+VLR+GL D P++LEE+GK F+V++E IR++E KA+ KLR+ + + FL
Sbjct: 331 ERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 387
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 158/274 (57%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ SL WA SE +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETEVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + E D SP+ ++ +++D+ +L L ++R+VL LR+GL
Sbjct: 223 SLDVRVGDNQDTELQEMLEDEG-PSPEYYTTQEFLRQDLNNLLAELTPQQREVLALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 EDGNEMSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|270307915|ref|YP_003329973.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Dehalococcoides sp. VS]
gi|270153807|gb|ACZ61645.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Dehalococcoides sp. VS]
Length = 520
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 145/233 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LI++ LV+ +A+ + G G+P DL+Q GN+G+++ E+FD RG+KFSTY +WIR++
Sbjct: 287 LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQA 346
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I+IP + I+K+ + L+ G+ P EIA L ++R +
Sbjct: 347 ITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIALEMDLPPEKVREIA 406
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ ++ S++ IG+ ++ +F D++ +P + RQ +K+ + +L SL RER+V
Sbjct: 407 KVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVLGSLTPRERRV 466
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
L LR+GL D R ++LEE+GK F+V++E IR++E KA+ KLR R L +L
Sbjct: 467 LQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 519
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 177/296 (59%), Gaps = 2/296 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E+ + L +E + WAQA G S+R + L G +
Sbjct: 79 AQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAK 138
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 139 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 198
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A AR I++P + +++K++KA++ L + P + E+A+ ++ ++R
Sbjct: 199 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKELAQELEMTPPQLRQ 258
Query: 418 ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRE 476
+ R S++ ++G + + ++ D+ ++ P+E + ++ ++ +L + L RE
Sbjct: 259 LLQLRRQSLSLNHRVGKGEDTELVDLLEDQDLQLPEEQMNEGMLRNEISAVLSDVLTERE 318
Query: 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ V+ LRYGL+ +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 319 KDVISLRYGLSTSQPHTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 374
>gi|254445278|ref|ZP_05058754.1| Sigma-70 region 3 family [Verrucomicrobiae bacterium DG1235]
gi|198259586|gb|EDY83894.1| Sigma-70 region 3 family [Verrucomicrobiae bacterium DG1235]
Length = 576
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 149/247 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++HL + E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 306 VRRHLKAAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 365
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + ++K+ + +K L +G P E+A
Sbjct: 366 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEVA 425
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+ L + +++ + + S+ +GD + + +F D+S ++P + +++ +
Sbjct: 426 EEMALPVERVQTIMKMAQQPISLQSPVGDGDDTNFGDFIEDKSAENPYDQTAFSLLREKI 485
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L+SL RER+VL LR+GL D ++LEE+GK F V++E IR++E KA+ K+R
Sbjct: 486 IDVLDSLTERERRVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRI 545
Query: 526 RDLSHFL 532
R L F
Sbjct: 546 RQLHGFF 552
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 152/269 (56%), Gaps = 8/269 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESG+ A+ L + + G ++ L ++ LV+ +A+ Y G G+ F
Sbjct: 185 QESGEEIPAEVLAE--------LNKAIKRGERAKQRLAEANLRLVVSIAKRYVGRGMQFL 236
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 237 DLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 296
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + + L G P EIA+ + + +R + + S++ IG+ ++ +F
Sbjct: 297 VIRVSRQLLQELGHDPSPEEIAEEMSMPVERVREILKIAQEPVSLETPIGEEEDSHLGDF 356
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
PD P E +K+ + +L +L RE +VL LR+G+ D R ++LEE+GK F+V
Sbjct: 357 IPDEDASEPAEAASFTLLKEQLVEVLSTLTPREEKVLKLRFGIEDGRTRTLEEVGKEFNV 416
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L FL
Sbjct: 417 TRERIRQIEAKALRKLRHPSRSKKLKDFL 445
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 175/305 (57%), Gaps = 1/305 (0%)
Query: 229 LNSRGRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN+ GR I E E+S+ +Q +++ + ++ G+ S A+A +S L+
Sbjct: 56 LNTIGRVPRIDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLR 115
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ G + +LI + LV+ +A+ Y G+PF DL+Q GN+G+++ E+F+ RG++
Sbjct: 116 SRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFR 175
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR+ I++ +A AR I++P + ++ +++ + L G+ P + E+A+
Sbjct: 176 FSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKLQGRRPTEAELAEA 235
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
G+ + ++R + + S+D +G ++ + D + P + ++ Q M++DV
Sbjct: 236 LGIKVKKLRMIQQAAALPLSLDVPVGQEGESRLGDLLQDERQEQPFQGILVQSMQQDVRS 295
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+++L ERQVL LRYGL+ + ++L E+G F++++E IR++E+ A+ KLR + R
Sbjct: 296 AMQTLKPIERQVLELRYGLDGQQARTLREVGDHFNLTRERIRQIERDALRKLRVGYSSRA 355
Query: 528 LSHFL 532
L+ ++
Sbjct: 356 LAQYI 360
>gi|366162136|ref|ZP_09461891.1| RNA polymerase sigma factor RpoD [Acetivibrio cellulolyticus CD2]
Length = 359
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 133 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 192
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L GK P+ EIAK + + ++R + +
Sbjct: 193 QARTIRIPVHMVETINKLIRVSRQLLQELGKEPQPEEIAKEMNMPVEKVREIMKISQEPV 252
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L++L RE +VL LR+GL
Sbjct: 253 SLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGL 312
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F+V++E IR++E KA+ KLR + L +L
Sbjct: 313 DDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
>gi|406835430|ref|ZP_11095024.1| sigma-70 family RNA polymerase sigma factor [Schlesneria paludicola
DSM 18645]
Length = 565
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 169/304 (55%), Gaps = 25/304 (8%)
Query: 234 RRLTIARNEAEMSKG-----VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
RR A NEAE+S+ V++V LE +++ A + W +A KQ
Sbjct: 252 RRTAAAVNEAEVSRRELNDLVELV--LETPADFVDRVRRIMAKFDAWTRA--------KQ 301
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
HL+ G LV+ +A+ YR G+ F DL+Q GN G+++G E++++ RGYKF
Sbjct: 302 HLSGG----------NLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKF 351
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WIR++I++ VA HAR I+IP + + IS+++ + + G+ P E+A+
Sbjct: 352 STYATWWIRQAITRAVADHARTIRIPVHMFQCISQLKAKSEQIRQETGRDPSMEELAESV 411
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
G+S+ E + + S+D +G+ + + +F D + +P E M++ ++ + +
Sbjct: 412 GMSIEETERIMKTWKHPVSLDTPVGESEDGSFGDFLQDDNETNPAESAMQEMLRDKIEVV 471
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L SL RER+++ LRYGL D +LEE G++F V++E IR++E KA+ KL+ L
Sbjct: 472 LRSLTYREREIIKLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHETRANHL 531
Query: 529 SHFL 532
F+
Sbjct: 532 RGFV 535
>gi|312898762|ref|ZP_07758151.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
gi|310620193|gb|EFQ03764.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
Length = 437
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 153/254 (60%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG +E + ++ G +++L + LV+ +A+ Y G G+ F DL+Q GN+G+L+ E
Sbjct: 184 AGSAEGATPEEVSAGNIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVE 243
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+++GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 244 KFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 303
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMR 458
P EIA+ G+ + +R + + S++ IG+ ++ +F D+ +P +
Sbjct: 304 PLPEEIAEKMGVPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQEAIAPDDAASF 363
Query: 459 QHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518
+K+ + + L RER+VL LR+GL D RP++LEE+G+ F+V++E IR++E KA++K
Sbjct: 364 ILLKEQIEDVFSCLTDRERKVLYLRFGLKDGRPRTLEEVGQHFNVTRERIRQIEGKALSK 423
Query: 519 LRDSETCRDLSHFL 532
LR+ + FL
Sbjct: 424 LRNWGKREKIKDFL 437
>gi|374296445|ref|YP_005046636.1| RNA polymerase, sigma 38 subunit, RpoS [Clostridium clariflavum DSM
19732]
gi|359825939|gb|AEV68712.1| RNA polymerase, sigma 38 subunit, RpoS [Clostridium clariflavum DSM
19732]
Length = 359
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 133 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 192
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L GK P+ EIAK + + ++R + +
Sbjct: 193 QARTIRIPVHMVETINKLIRVSRQLLQELGKEPQPEEIAKEMNMPVEKVREIMKISQEPV 252
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L++L RE +VL LR+GL
Sbjct: 253 SLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGL 312
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F+V++E IR++E KA+ KLR + L +L
Sbjct: 313 DDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 170/284 (59%), Gaps = 1/284 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E +K VQ L +IK +L+++ G+ + + WA+ A +S + LK L G + +++
Sbjct: 29 EIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEAAKRKMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I+
Sbjct: 89 EANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAIT 148
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A R I++P + +++KI+KA++ L G+ E+A+ L+ ++R E
Sbjct: 149 RAIAEKGRTIRLPIHITEKLNKIKKAQRKLAQQKGRMATIAELAEELELTPKQVRDYLEK 208
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLV 481
R S+D K+GD + + + D +SP++ ++KD+ R++ L ++++V+
Sbjct: 209 SRQPISLDVKVGDNNDTELGDMLVDMG-QSPEDYATSSSLRKDLSRLMSELTPQQQEVIS 267
Query: 482 LRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
LR+GL D +P +L +IG +S+E +R++E++A+TKLR +T
Sbjct: 268 LRFGLRDGKPLTLAKIGTFLSISRERVRQIEREALTKLRQRKTV 311
>gi|419672484|ref|ZP_14201979.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51037]
gi|380655692|gb|EIB71998.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51037]
Length = 622
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL ND ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMNDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|312139424|ref|YP_004006760.1| sigma-70 factor sigb [Rhodococcus equi 103S]
gi|325672687|ref|ZP_08152383.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi ATCC
33707]
gi|311888763|emb|CBH48075.1| sigma-70 factor SigB [Rhodococcus equi 103S]
gi|325556564|gb|EGD26230.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi ATCC
33707]
Length = 322
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 82 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+++ +G+
Sbjct: 142 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELSQESGIPE 201
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + DV +L +L
Sbjct: 202 HKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSDVRSVLATL 261
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D +P++L++IGKLF +S+E +R++E++ M KLR E L +
Sbjct: 262 DEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGERADRLRAY 320
>gi|108805110|ref|YP_645047.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108766353|gb|ABG05235.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 366
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L+++ LV+ +A+ YR G+ F DL+Q GN+G+++ AE+FD+ +G+KFSTY +W
Sbjct: 129 SKDKLVEANLRLVVSIAKKYRNRGVSFLDLIQEGNIGLIRAAEKFDYRKGFKFSTYATWW 188
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A R I+IP + +++K + ++ +T + G+ P D E+A+ G+ + E+
Sbjct: 189 IRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALGREPTDEEVAEELGVPVEEV 248
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
E + S++ +GD ++ +F D S +P + V +K + L+ L R
Sbjct: 249 LRLQEISQRSISLETPVGDDESSSLGDFLEDASAVTPTDAVSESLLKLHLREALDELPER 308
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ERQ++ +R+G+ D RP++LEE+G+ F +++E +R+++ K + LR+ ++L +L
Sbjct: 309 ERQIIEMRFGMKDDRPRTLEEVGREFDITRERVRQIQMKTLNLLREQRRTQNLREYL 365
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 163/274 (59%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + NL ++ L KE + + W+ AG+SE + + G ++++I++
Sbjct: 50 KKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRRAKQKMIEANLR 109
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 110 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 169
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
++R I++P + +++KI++ ++ L +G+ EIAK L ++IR R
Sbjct: 170 NSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQIRDYLLASRHPV 229
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + + D S S V +Q +++D+ ++ L ++R+VL LRYGL
Sbjct: 230 SLDLRVGDNQDTELQDLLEDESA-SADSYVTQQLLRQDLKDMMADLTPQQREVLTLRYGL 288
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
ND + SL ++G ++S+E +R+LE +A+ LR
Sbjct: 289 NDGKEMSLSKVGVQMNISRERVRQLENQALNHLR 322
>gi|421186327|ref|ZP_15643720.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB418]
gi|399967280|gb|EJO01762.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB418]
Length = 458
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 159/269 (59%), Gaps = 2/269 (0%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 307
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + ++ L G+ P E+ L+ ++R + + S++ IG+ ++ +F
Sbjct: 308 LIRIQRTLIQDLGRDPMPEEVGAEMELTADKVREIQKIAQEPVSLETPIGEEDDSHLGDF 367
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D +SP E Q +K + +L +L RE VL LR+GL D + ++LEE+G++F V
Sbjct: 368 IEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGV 427
Query: 504 SKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++E IR++E KA+ KLR + L F+
Sbjct: 428 TRERIRQIEAKALRKLRHPSRSKQLKDFM 456
>gi|359767854|ref|ZP_09271636.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
gi|359314770|dbj|GAB24469.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
Length = 339
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 99 GEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 158
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++KI + ++ L G+ D E+A +G+
Sbjct: 159 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRELHQQLGREATDDELANESGIPA 218
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + DV +L +L
Sbjct: 219 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLHSDVRAVLATL 278
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR + L +
Sbjct: 279 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQGDRAERLRAY 337
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 163/274 (59%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + NL ++ L KE + + W+ AG+SE + + G ++++I++
Sbjct: 48 KKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
++R I++P + +++KI++ ++ L +G+ EIAK L ++IR R
Sbjct: 168 NSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQIRDYLLASRHPV 227
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + + D S S V +Q +++D+ ++ L ++R+VL LRYGL
Sbjct: 228 SLDLRVGDNQDTELQDLLEDESA-SADSYVTQQLLRQDLKDMMADLTPQQREVLTLRYGL 286
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
ND + SL ++G ++S+E +R+LE +A+ LR
Sbjct: 287 NDGKEMSLSKVGVQMNISRERVRQLENQALNHLR 320
>gi|262202171|ref|YP_003273379.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis
DSM 43247]
gi|262085518|gb|ACY21486.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis
DSM 43247]
Length = 337
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 97 GEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 157 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELANESGIPA 216
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ M DV +L +L
Sbjct: 217 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAESAVIAGLMHTDVRAVLATL 276
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR + L +
Sbjct: 277 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQGDRAERLRAY 335
>gi|406830145|ref|ZP_11089739.1| RNA polymerase sigma factor RpoD [Schlesneria paludicola DSM 18645]
Length = 553
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 146/243 (60%), Gaps = 2/243 (0%)
Query: 292 FGWY--CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
FG Y EL LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFS
Sbjct: 300 FGAYEQAMRELSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFS 359
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WIR++I++ +A AR I+IP + +SK++K K L G+ P E A+ G
Sbjct: 360 TYATWWIRQAITRAIADQARTIRIPVHMIETMSKLRKVSKRLLQEKGREPTIEETAEAAG 419
Query: 410 LSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL 469
+SL E R + R S+D+ +G+ ++ + +F D S +SP ++ +K + +L
Sbjct: 420 VSLEETRRVLKISRHPISLDRPVGESEDSYFGDFIEDDSTESPVNSATQEMLKDKIDVVL 479
Query: 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLS 529
++L RER+++ LRYGL D +LEE+G++F V++E +R++E KA+ KL+ + L
Sbjct: 480 KTLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLK 539
Query: 530 HFL 532
FL
Sbjct: 540 GFL 542
>gi|409351169|ref|ZP_11233997.1| RNA polymerase sigma factor [Lactobacillus equicursoris CIP 110162]
gi|407876928|emb|CCK86055.1| RNA polymerase sigma factor [Lactobacillus equicursoris CIP 110162]
Length = 373
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+EEL + LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ G+KFSTY +W
Sbjct: 136 AKEELTNANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EIA L + ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKV 255
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K + +L++L R
Sbjct: 256 REILKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAANELLKDQLAEVLDTLTDR 315
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D P++LEE+G++F V++E IR++E KA+ KLR L FL
Sbjct: 316 EENVLRLRFGLDDDNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFL 372
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 166/274 (60%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ +A + I+ L E + + WA AA +SE L+ + G + +++++
Sbjct: 31 KQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGERAKRKMVEANLR 90
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +A
Sbjct: 91 LVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAE 150
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+KA++ L+ G+ E+A L+ A++R E R
Sbjct: 151 KGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINELAAELELTPAQVREYLERARQPL 210
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + E D S+ SP+E + ++ D+ R++ L ++R VL LR+GL
Sbjct: 211 SLDVRVGDNQDTELGELLEDSSI-SPEEFATQSLLRSDLERLMAELTPQQRHVLSLRFGL 269
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ +P +L ++G+L ++S+E +R++E++A++KLR
Sbjct: 270 ENGQPLTLAKVGELLNISRERVRQIEREALSKLR 303
>gi|46445811|ref|YP_007176.1| RNA polymerase sigma factor [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399452|emb|CAF22901.1| probable transcription initiation factor sigma 70 [Candidatus
Protochlamydia amoebophila UWE25]
Length = 554
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 144/239 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RGYKFSTY +W
Sbjct: 312 AKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWW 371
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++++ +A AR I+IP + I+K+ + K L G+ P E+AK G++ +
Sbjct: 372 IRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGREPSPEELAKELGITAERV 431
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S+ ++GD +++ +F D SP E +K + +L +L R
Sbjct: 432 REIYKIAQHPISLQAEVGDGGESQFGDFLEDTGADSPAEATGYSILKDKMGEVLSTLSDR 491
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
ER+VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R + L FL L
Sbjct: 492 ERKVLIQRFGLLDGKPKTLEEVGVEFNVTRERIRQIEAKALRKMRHPIRSKQLKAFLDL 550
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 152/253 (60%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
+ V +R L Q + G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E
Sbjct: 75 SAVKKRDLAQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAME 134
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+ +G+KFSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+
Sbjct: 135 KFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGRE 194
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMR 458
D E+A +G+ +I + R S+D +G A +F D S + V+
Sbjct: 195 ATDDELAAESGIPAEKIADLLDHSRDPVSLDMPVGTDEEAPLGDFIEDAEATSAENAVIA 254
Query: 459 QHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518
+ DV +L +LD RE+QV+ +R+GL+D +P++L++IG+LF +S+E +R++E++ M K
Sbjct: 255 GLLHSDVRTVLGTLDEREQQVIRMRFGLDDGQPRTLDQIGRLFGLSRERVRQIEREVMVK 314
Query: 519 LRDSETCRDLSHF 531
LR + L +
Sbjct: 315 LRHGDRAERLRAY 327
>gi|359419322|ref|ZP_09211280.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
gi|358244729|dbj|GAB09349.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
Length = 321
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 148/240 (61%)
Query: 281 VSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
V +R L Q + G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+F
Sbjct: 69 VRKRDLNQIVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 128
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+ +G+KFSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+
Sbjct: 129 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 188
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQH 460
D E+A +G+ +I + R S+D +G A +F D S + +V+
Sbjct: 189 DDELAAESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDTEATSAENVVIAGL 248
Query: 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ D+ +L +LD RE+QV+ +RYGL+D +P++L++IG+ F +S+E +R++E++ M KLR
Sbjct: 249 LHSDIRSVLATLDDREQQVIRMRYGLDDGQPRTLDQIGRAFGLSRERVRQIEREVMVKLR 308
>gi|378717650|ref|YP_005282539.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
gi|375752353|gb|AFA73173.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
Length = 339
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 99 GEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 158
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++KI + ++ L G+ D E+A +G+
Sbjct: 159 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRELHQQLGREATDDELANESGIPA 218
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + DV +L +L
Sbjct: 219 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLHSDVRAVLATL 278
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR + L +
Sbjct: 279 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQGDRAERLRAY 337
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 177/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTGL-SPEDYTAYSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 166/290 (57%), Gaps = 6/290 (2%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGV-----SERVLKQHLAFGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ +R L + A G +++LI+
Sbjct: 92 VPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRVEAVGLDAKQQLIE 151
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 152 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 211
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
+A AR I+IP + I+K+ + ++ L + P EI + GLS +R +
Sbjct: 212 AIADQARTIRIPVHMVETINKLVRIQRQLLQDLNRDPTPEEIGEKMGLSAERVREIQKIS 271
Query: 423 RIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVL 482
+ S++ IG+ +++ +F D S P + +++ + ++L+ L RER+V+ L
Sbjct: 272 QEPVSLETPIGEEEDSQLGDFIEDDSAVVPPDAASFSMLQEQLSKVLDGLAERERKVISL 331
Query: 483 RYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
R+GL D P +LEE+G+ F V++E IR++E K + KLR L +L
Sbjct: 332 RFGLEDGHPHTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDYL 381
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 160/274 (58%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSETDVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P +EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPVEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + + D SP+ ++ +++D+ +L L ++R+VL LR+GL
Sbjct: 223 SLDVRVGDNQDTELQDMLEDDG-PSPEYYTNQEFLRQDLNNLLAELTPQQREVLALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 EDGNELSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 169/288 (58%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L K LE + GK SL WA +SE L + +
Sbjct: 29 RVPLLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSEAELDRAIKQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E++D T+GYKFSTY
Sbjct: 89 GQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L+ G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAQELELDT 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D ++GD + + E D SP ++ +++D+ ++ L
Sbjct: 209 AQIREYLNVARQPISLDVRVGDNQDTELSELLEDEGT-SPDNYATQELLRQDLLHLMADL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V+ LR+GL D + SL +IG+ ++S+E +R+LE +A+ +LR
Sbjct: 268 TPQQREVIALRFGLEDGKELSLAKIGQRMNLSRERVRQLEHQALAQLR 315
>gi|293375429|ref|ZP_06621710.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325844412|ref|ZP_08168139.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645982|gb|EFF64011.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489086|gb|EGC91470.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 464
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 152/251 (60%), Gaps = 4/251 (1%)
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
++RVL + Y ++ L++S LV+ +AR + G G+ F DL+Q GN+G+++ E+FD
Sbjct: 216 ADRVLHE----AEYAKKRLVESNLRLVVSIARRHIGRGMLFLDLIQEGNMGLIKAVEKFD 271
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+ +G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 272 YRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRIQRQLVQELGREPLP 331
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHM 461
EIA+ ++ + R + + S++ +GD ++ +F PD SP + + +
Sbjct: 332 EEIAEKMEITPEKAREILKISQEPISLESPVGDEADSSLGDFIPDADALSPSDFTSNEML 391
Query: 462 KKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521
KK++ +LE+L RE +VL LR+GL D ++LEE+GK F V++E IR++E KA+ KLR
Sbjct: 392 KKELAEVLETLTDREERVLRLRFGLEDGHTRTLEEVGKEFGVTRERIRQIEAKALRKLRH 451
Query: 522 SETCRDLSHFL 532
R L F+
Sbjct: 452 PSRSRRLKDFM 462
>gi|255282119|ref|ZP_05346674.1| RNA polymerase sigma factor RpoD [Bryantella formatexigens DSM
14469]
gi|255267438|gb|EET60643.1| RNA polymerase sigma factor RpoD [Marvinbryantia formatexigens DSM
14469]
Length = 374
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 146/238 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ LI++ LV+ +A+ Y G G+PF DL+Q GN+G+++ ++FD+ +G+KFSTY +W
Sbjct: 137 AKKRLIEANLRLVVSIAKKYVGRGMPFLDLIQEGNMGLMKAVDKFDYAKGFKFSTYATWW 196
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A R I++P + I+K + + L G+ P E+A+ + ++ +
Sbjct: 197 IRQAITRGIADTGRTIRVPVHMVETINKTLRMTRTLLQELGREPTPEEVAERLNVPVSRV 256
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + R S+D IG+ ++ +F D S SP + +++++ LESL R
Sbjct: 257 REVLKISRDPVSLDTPIGEEDDSHLGDFIEDDSALSPSDSAAFSMLREELGTALESLTDR 316
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
ERQV+ LR+GL D R ++LEE+GK F+V++E IR++E KA+ KLR + L FL+
Sbjct: 317 ERQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKRLKDFLI 374
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTGL-SPEDYTAHSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|406978397|gb|EKE00372.1| hypothetical protein ACD_22C00037G0001 [uncultured bacterium]
Length = 367
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 144/238 (60%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++ L KS LV+ +A+ Y G G+ F DL+Q GN G+++ E++D T+G+KFSTY +
Sbjct: 129 HAKDMLTKSNLRLVVSIAKKYMGRGMSFLDLIQEGNKGLIRAVEKYDWTKGFKFSTYATW 188
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P D E+A + +
Sbjct: 189 WIRQAITRAIADQARTIRIPVHMVETINKLIRTQRKLMQDLGREPTDDEVAAELETTPEK 248
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + + S++ IGD ++ +F PD +P E RQ M +++ L SL
Sbjct: 249 VREILKIAQKTTSLETPIGDDEDSMLGDFIPDERQATPYESTSRQLMHENLEDALGSLTE 308
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE +VL +R+GL+ +P +LEE+GK+F V++E IR++E KA+ KLR R L +L
Sbjct: 309 RESKVLRMRFGLDGSKPLTLEEVGKVFGVTRERIRQIESKALRKLRHPSRRRKLQDYL 366
>gi|402816528|ref|ZP_10866118.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
gi|402505430|gb|EJW15955.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
Length = 298
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 142/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +AR Y G G+ DL+Q GN+G+++ ++FD+T+G+KFSTY +WIR++I++ +A
Sbjct: 72 LVVSIARRYAGRGMSLLDLIQEGNMGLIKAVDKFDYTKGFKFSTYATWWIRQAITRAIAD 131
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ PE EIAK LS+ ++R + +
Sbjct: 132 QARTIRIPVHMIETINKLVRVSRQLVQELGREPEVEEIAKEMELSVEKVREIMKISQDPI 191
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ + K +F D+ +SP E + +K + +L++L RE VL LR+GL
Sbjct: 192 SLETPIGEEHDTKLGDFIEDQDAQSPVESAAYESLKTQLGDVLDTLTEREENVLRLRFGL 251
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G++F V++E IR++E KA+ KLR + L ++
Sbjct: 252 DDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKRLKDYI 297
>gi|222053802|ref|YP_002536164.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter daltonii
FRC-32]
gi|221563091|gb|ACM19063.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
daltonii FRC-32]
Length = 586
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 161/278 (57%), Gaps = 8/278 (2%)
Query: 256 ERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
ER +E+ESG KA+ L+ QA E K + EL+++ LV+ +A+
Sbjct: 315 ERKLKKIEQESGFKASELSTALQAIEEGEHKAK-------LAKSELVEANLRLVVSIAKK 367
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP
Sbjct: 368 YTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIP 427
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ I+K+ + + L G+ P EIA+ L L ++R + + S++ IG+
Sbjct: 428 VHMIETINKLIRTSRQLVQEIGREPSPEEIAERMSLPLDKVRKVLKIAKEPISLETPIGE 487
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
++ +F D+ V SP E V++ ++ + R+L +L RE +VL +R+G+ + +L
Sbjct: 488 EEDSHLGDFIEDKGVVSPLEAVIKANLSEQTSRVLSTLTPREEKVLRMRFGIGEKSDHTL 547
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
EE+G+ F V++E IR++E KA+ KLR + L F+
Sbjct: 548 EEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLKSFV 585
>gi|257458803|ref|ZP_05623926.1| RNA polymerase sigma factor RpoD [Campylobacter gracilis RM3268]
gi|257443791|gb|EEV18911.1| RNA polymerase sigma factor RpoD [Campylobacter gracilis RM3268]
Length = 626
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 391 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 450
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA+ GLS+ +++
Sbjct: 451 ISRAIADQARTIRIPIHMIETINRINKITRKYMQEGGKEPDINVIAQEVGLSVDKVKQVI 510
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F D+S SP E +++ +K+ + ILE L+ RER V
Sbjct: 511 KITKEPISLEAPIGNEDDGKFGDFVEDKSSVSPIEQILKSDLKEQIDDILEQLNDRERTV 570
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L+D ++LEEIGK ++++E +R++E A+ KL+ + R L ++
Sbjct: 571 IRMRFGLLDDESDRTLEEIGKELNITRERVRQIESSAIKKLKHPKIGRKLKTYI 624
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 187/322 (58%), Gaps = 16/322 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + ++PT FSA+ L+ GR + + +E E+ G QV +++ T LEK
Sbjct: 1 MPTAKVNPKNQKPT-FSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QKMMTLLEK 54
Query: 265 ESGKA------ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
+ A SL WA +SE L + + G + ++I++ LV+ +A+ Y+
Sbjct: 55 KDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLN 378
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 174
Query: 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNA 438
+++KI+K ++ L+ G+ EIAK L +IR R S+D ++GD +
Sbjct: 175 EKLNKIKKTQRELSQQLGRSATPSEIAKALDLEPDQIREFLSMSRQPISLDVRVGDNQDT 234
Query: 439 KYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIG 498
+ E D + SP + ++ M++D+ +L L ++R+VL LR+GL D + SL +IG
Sbjct: 235 ELSELLEDEGI-SPDNYITQELMRQDLQDLLAELTPQQREVLSLRFGLQDGKELSLAKIG 293
Query: 499 KLFHVSKEWIRKLEKKAMTKLR 520
+ ++S+E +R+LE +A+++LR
Sbjct: 294 QRMNISRERVRQLEHQALSQLR 315
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 169/288 (58%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + + K TL +E + + WA SE LK+ +
Sbjct: 35 RVPLLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSEAELKKAIDQ 94
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 95 GTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 154
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L+ + G+ EIAK L
Sbjct: 155 YWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQTLGRNATPTEIAKELDLEP 214
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D ++GD + + E D + +P ++ +++D+ +L L
Sbjct: 215 AQIREYLSIARQPISLDVRVGDNQDTELSELLEDDGL-TPVNYTTQESLRQDLNLLLAEL 273
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+VL LR+GL D + SL ++GK ++S+E +R+LE +A+ +LR
Sbjct: 274 TPQQREVLALRFGLEDGKELSLAKVGKRLNLSRERVRQLEHQALAQLR 321
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 151/246 (61%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G
Sbjct: 77 LKAVVRDGVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKG 136
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ +A +R I++P L +++KI + ++ L G+ D E+A
Sbjct: 137 FKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDEELA 196
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
GL++ ++ + R S+D +G +A +F D + V+ ++ D+
Sbjct: 197 NEAGLTVEKVADLLDHSRDPVSLDMPVGAEEDAPLGDFIEDAESADAENAVISGFLQDDL 256
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
R+L +L+ RE+ V+ +RYGL+D +P++L++IGK F +S+E +R++E++ M+KLR +
Sbjct: 257 RRVLSTLEEREQAVIRMRYGLDDGQPRTLDQIGKAFGLSRERVRQIEREVMSKLRQGDRA 316
Query: 526 RDLSHF 531
L +
Sbjct: 317 DKLRAY 322
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 177/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L+ + G S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTGL-SPEDYTAYSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|377561657|ref|ZP_09791100.1| RNA polymerase sigma factor SigB [Gordonia otitidis NBRC 100426]
gi|377521219|dbj|GAB36265.1| RNA polymerase sigma factor SigB [Gordonia otitidis NBRC 100426]
Length = 337
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 97 GEIARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 157 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPA 216
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + DV +L +L
Sbjct: 217 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAESAVIAGLLHSDVRAVLATL 276
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR E L +
Sbjct: 277 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQGERAERLRAY 335
>gi|282891123|ref|ZP_06299627.1| hypothetical protein pah_c047o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338176440|ref|YP_004653250.1| RNA polymerase sigma factor rpoD [Parachlamydia acanthamoebae UV-7]
gi|281498940|gb|EFB41255.1| hypothetical protein pah_c047o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480798|emb|CCB87396.1| RNA polymerase sigma factor rpoD [Parachlamydia acanthamoebae UV-7]
Length = 546
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 149/251 (59%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + + E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 292 RMLQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 351
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L G+ P E
Sbjct: 352 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGREPSPEE 411
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A G++ +R + + S+ ++GD +++ +F D SP E +K
Sbjct: 412 LANELGITAERVREIYKIAQHPISLQAEVGDGGESQFGDFLEDTGADSPAEATGYSILKD 471
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L +L RER+VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 472 KMNEVLATLTDRERKVLIQRFGLLDGKPKTLEEVGVEFNVTRERIRQIEAKALRKMRHPT 531
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 532 RSKQLKAFLDL 542
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 187/318 (58%), Gaps = 8/318 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + N K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMNFLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK ++ W++ + ++ L Q L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 ADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ +R I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
KI+K ++ L+ + G+ EIA+ + ++IR R S+D ++GD + + E
Sbjct: 179 KIKKTQRELSQTLGRSATPSEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTELSE 238
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
D+ V SP + ++ +++D+ ++ L ++R VL LR+GL D + SL +IGK +
Sbjct: 239 LLEDQGV-SPDLYITQELLRQDLRNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRMN 297
Query: 503 VSKEWIRKLEKKAMTKLR 520
+S+E +R+LE +A+ +LR
Sbjct: 298 ISRERVRQLEHQALAQLR 315
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTGL-SPEDYTAHSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|359427058|ref|ZP_09218133.1| RNA polymerase sigma factor SigB [Gordonia amarae NBRC 15530]
gi|358237671|dbj|GAB07715.1| RNA polymerase sigma factor SigB [Gordonia amarae NBRC 15530]
Length = 332
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 146/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 92 GEIARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++KI + ++ L G+ D EI+ +G+
Sbjct: 152 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRELHQQLGREATDAEISNESGIPE 211
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + +V+ + D+ +L +L
Sbjct: 212 EKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAENVVISGLLHSDIRAVLATL 271
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG+ F +S+E +R++E++ M KLR + L +
Sbjct: 272 DEREQQVIRMRYGLDDGQPRTLDQIGRAFGLSRERVRQIEREVMGKLRHGDRAERLRAY 330
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 174/293 (59%), Gaps = 2/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E E++ V+ + E + L+ + + S WAQA G+ +ER L+ L G + ++
Sbjct: 79 EIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGRAAKRKM 138
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 139 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 198
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + P + E+A+ + +R +
Sbjct: 199 TRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEQELAQALEIDCEHLRQLLQ 258
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQV 479
R S++ ++G + + ++ D ++ P+E + M++D+ +L + L RE+ V
Sbjct: 259 LRRQSLSLNHRVGKGEDTELVDLLEDEELQLPEEKMNEAMMRQDIAAVLTDVLTEREKDV 318
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ LRYGL +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 319 IALRYGLITSQPYTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 371
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 175/299 (58%), Gaps = 1/299 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E +++ VQ + +E I+ LE + S A++ G++E+ L L
Sbjct: 75 LLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAESLGMNEKQLDHRLYQSRV 134
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+ F DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYLNRGVAFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A +R I++P + +++K++KA++ L + P ++E+A+ + +
Sbjct: 195 IRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRNLKQELHRNPTEVELAEALEIPPEHL 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDS 474
R + R S++ ++G + +E D +SP++ + M++D++ +L E L+
Sbjct: 255 RQLLQLRRRSLSLNHRVGKGEETELVELLEDSENQSPEQQMNDSMMRQDIWEVLDEVLNE 314
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
RER V+ LRYGL + P +LEE+G LF++S+E +R+++ KAM KLR + R L +L
Sbjct: 315 RERDVICLRYGLASNEPYTLEEVGSLFNLSRERVRQIQSKAMRKLRRPQVARRLKGWLT 373
>gi|408790545|ref|ZP_11202163.1| RNA polymerase sigma factor RpoD [Lactobacillus florum 2F]
gi|408520092|gb|EKK20186.1| RNA polymerase sigma factor RpoD [Lactobacillus florum 2F]
Length = 401
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 148/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 164 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 223
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P IEI + A++
Sbjct: 224 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPLPIEIGAEMDMPTAKV 283
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP++ + +K+ + +L++L R
Sbjct: 284 RNIMKISQEPVSLETPIGEEDDSHLGDFIEDKEATSPEDHASYELLKEQLESVLDTLTDR 343
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 344 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 400
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 175/296 (59%), Gaps = 1/296 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+++ V+ + + I+ L+++ G+ + A ++E+ L+ L G +
Sbjct: 82 ADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRVAKR 141
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+
Sbjct: 142 KMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQ 201
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
+I++ +A AR I++P + +++K++KA++ L G P + E+A + +++ ++R
Sbjct: 202 AITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLGHNPSEAEMAAFLEMTVQQLRQL 261
Query: 419 SECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRER 477
+ R S++ ++G + + ++ D SP+ + M+++++ +L + L RE+
Sbjct: 262 QQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVLTPREK 321
Query: 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
V+ LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 322 DVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 377
>gi|406914403|gb|EKD53587.1| hypothetical protein ACD_61C00009G0004 [uncultured bacterium]
Length = 367
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ L KS LV+ +A+ Y G G+ F DL+Q GN G+++ E++D T+G+KFSTY +W
Sbjct: 130 AKDMLTKSNLRLVVSIAKKYMGRGMSFLDLIQEGNKGLIRAVEKYDWTKGFKFSTYATWW 189
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P D E+A+ + ++
Sbjct: 190 IRQAITRAIADQARTIRIPVHMVETINKLIRTQRKLMQDLGREPTDEEVAEELETTPEKV 249
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IGD ++ +F PD +P E RQ M +++ L SL R
Sbjct: 250 REILKIAQKTTSLETPIGDDEDSLLGDFIPDERQATPYEATSRQLMHENLEEALGSLTER 309
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL +R+GL+ +P +LEE+GK+F V++E IR++E KA+ KLR R L +L
Sbjct: 310 ESKVLRMRFGLDGSKPLTLEEVGKVFGVTRERIRQIESKALRKLRHPSRRRKLQDYL 366
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 178/301 (59%), Gaps = 5/301 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + K L +E G+ + WAQA G+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+IR + R+ S+D ++GD + + + D +P++ ++ ++ D+ +++ L
Sbjct: 201 KQIREYLDRARLPLSLDLRVGDNQDTELGDLLEDTGT-TPEDFALQSSLRTDLDQLMAEL 259
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++R+VL LR+GL D + +L +IG ++S+E +R++E++A+TKLR + +D++ +L
Sbjct: 260 TQQQREVLALRFGLEDGQTLTLAKIGDRLNISRERVRQIEREALTKLRKRK--QDINDYL 317
Query: 533 V 533
Sbjct: 318 A 318
>gi|377556058|ref|ZP_09785781.1| RNA polymerase sigma factor [Lactobacillus gastricus PS3]
gi|376168796|gb|EHS87524.1| RNA polymerase sigma factor [Lactobacillus gastricus PS3]
Length = 379
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 142 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 201
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 202 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMETQKV 261
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP E + MKK + +L++L R
Sbjct: 262 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYEMMKKQLENVLDTLTDR 321
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 322 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 378
>gi|325106737|ref|YP_004267805.1| RNA polymerase sigma-70 subunit RpoD [Planctomyces brasiliensis DSM
5305]
gi|324967005|gb|ADY57783.1| RNA polymerase, sigma 70 subunit, RpoD [Planctomyces brasiliensis
DSM 5305]
Length = 575
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 147/249 (59%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R +K+ F +++L LV+ +A+ YR G+ F DL+Q GN G+++G E++++
Sbjct: 304 REIKRRFGFWTEAKQKLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYR 363
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR++I++ VA HAR I+IP + + IS ++ + + G+ P E
Sbjct: 364 RGYKFSTYATWWIRQAITRAVADHARTIRIPVHMFQSISTLKAKAEQIRQETGREPTMEE 423
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A +S+ E + + S+D +G+ ++ + +F D S +P + M+Q ++
Sbjct: 424 LAAAIDMSVEETERIMKTWKHPVSLDTPVGESEDSSFGDFLQDDSENTPADTAMQQMLRD 483
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L+SL RER+++ LRYGL D +LEE G++F V++E IR++E KA+ KL+
Sbjct: 484 KINHVLKSLTYREREIIKLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQT 543
Query: 524 TCRDLSHFL 532
L F+
Sbjct: 544 RSNHLKGFV 552
>gi|408411647|ref|ZP_11182785.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
gi|407874195|emb|CCK84591.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
Length = 389
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+EEL + LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ G+KFSTY +W
Sbjct: 152 AKEELTNANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYATWW 211
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P+ EIA L + ++
Sbjct: 212 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPQPEEIAAEMDLPVKKV 271
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K + +L++L R
Sbjct: 272 REILKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAANELLKDQLAEVLDTLTDR 331
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D P++LEE+G++F V++E IR++E KA+ KLR L FL
Sbjct: 332 EENVLRLRFGLDDDNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFL 388
>gi|104774139|ref|YP_619119.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423220|emb|CAI98048.1| RNA polymerase sigma factor RpoD (Sigma-A) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
Length = 372
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ G+KFSTY +W
Sbjct: 135 AKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EIA L + ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R A + + S++ IG+ ++ +F D+ SP++ + ++ + +L++L R
Sbjct: 255 REALKVAQEPVSLETPIGEEDDSHLGDFIEDKDTTSPEQHAASEMLRDQLAEVLDTLTDR 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D P++LEE+G++F V++E IR++E KA+ KLR L FL
Sbjct: 315 EENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFL 371
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 175/305 (57%), Gaps = 5/305 (1%)
Query: 220 PTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCW 275
P F+A+ L+ GR L E + K VQ + L K L G+ S W
Sbjct: 29 PPTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEW 88
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A+AA +S L ++L G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +
Sbjct: 89 AEAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 148
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
G E+FD T+GYKFSTY +WIR++I++ +A+ R I++P + +++KI+K ++ L+
Sbjct: 149 GVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQL 208
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEI 455
G+ E+AK + ++IR R S+D ++GD + + E D V SP
Sbjct: 209 GRSATPAEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAY 267
Query: 456 VMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515
+ ++ M++D+ +L L +++ VL +R+GLND + SL +IG+ ++S+E +R+LE +A
Sbjct: 268 ITQESMRQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQA 327
Query: 516 MTKLR 520
+ +L+
Sbjct: 328 LAQLK 332
>gi|384915839|ref|ZP_10016044.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
gi|384526701|emb|CCG91915.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
Length = 625
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 150/247 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LKQ L + ++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 373 LKQWLNEALKAKSCMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 432
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + +K L G+ P EIA
Sbjct: 433 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIA 492
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+ T +S+ IR+ + + S+ ++G+ + + +F D++ ++P E+ +++ +
Sbjct: 493 EETQMSVDRIRAIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLREKI 552
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L +L RER V+ R+GL D P++LEE+GK F V++E IR++E KA+ K+R
Sbjct: 553 RDVLHTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHPTRL 612
Query: 526 RDLSHFL 532
R L FL
Sbjct: 613 RHLKGFL 619
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 162/276 (58%), Gaps = 23/276 (8%)
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFG---WY-------------------CREELIKST 304
G SL WA+A+GV LK LA G W +E +IK+
Sbjct: 141 GHRPSLERWAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEIVEIQNEGTRAKEHMIKAN 200
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+ I++ +
Sbjct: 201 LRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAI 260
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
A +R I++P + +++KI+KA++ ++ + G+ + +IAK +++A+IR +
Sbjct: 261 ATQSRTIRLPVHITEKLNKIKKAQRKISQTQGRTAKAEDIAKELDMTVAQIREVLLKVPR 320
Query: 425 VGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRY 484
S+D K+G + + + + SP++ +MR+ +K+++ ++L L +RE++V+ LR+
Sbjct: 321 SVSLDTKVGKDRDTELGDLLETEDI-SPEDRLMRESLKRELHQLLTDLTTREQEVITLRF 379
Query: 485 GLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
GL+D P SL EIG+ +S+E +R++E KA+ KLR
Sbjct: 380 GLDDGVPYSLAEIGRTLELSRERVRQIESKALQKLR 415
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 166/290 (57%), Gaps = 6/290 (2%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGV-----SERVLKQHLAFGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ +R L + A G +++LI+
Sbjct: 103 VPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRVEAVGLDAKQQLIE 162
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 163 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 222
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
+A AR I+IP + I+K+ + ++ L + P EI + GLS +R +
Sbjct: 223 AIADQARTIRIPVHMVETINKLVRIQRQLLQDLNRDPTPEEIGEKMGLSAERVREIQKIS 282
Query: 423 RIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVL 482
+ S++ IG+ +++ +F D S P + +++ + ++L+ L RER+V+ L
Sbjct: 283 QEPVSLETPIGEEEDSQLGDFIEDDSAVVPPDAASFSMLQEQLSKVLDGLAERERKVISL 342
Query: 483 RYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
R+GL D P +LEE+G+ F V++E IR++E K + KLR L +L
Sbjct: 343 RFGLEDGHPHTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDYL 392
>gi|225163701|ref|ZP_03726004.1| RNA polymerase, sigma 70 subunit, RpoD family [Diplosphaera
colitermitum TAV2]
gi|224801692|gb|EEG19985.1| RNA polymerase, sigma 70 subunit, RpoD family [Diplosphaera
colitermitum TAV2]
Length = 631
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 144/244 (59%)
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
H+ + E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RGYKF
Sbjct: 325 HIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKF 384
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WIR++I++ +A AR I+IP + ++K+ + +K L G P E+A
Sbjct: 385 STYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADEM 444
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
L + ++ + + S+ +GD + + +F D+S ++P ++ +++ + +
Sbjct: 445 NLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIIDV 504
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L+SL RER+VL LR+GL D ++LEE+GK F V++E IR++E KA+ K+R R L
Sbjct: 505 LDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQL 564
Query: 529 SHFL 532
F
Sbjct: 565 HGFF 568
>gi|409358553|ref|ZP_11236916.1| RNA polymerase sigma factor SigB [Dietzia alimentaria 72]
Length = 322
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 150/248 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK +A G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G
Sbjct: 75 LKAVVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKG 134
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ +A +R I++P L +++K+ + ++ L G+ E+A
Sbjct: 135 FKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGRESTLDELA 194
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+ +G+ +I + R S+D +G A +F D S + V+ M DV
Sbjct: 195 EESGIPAHKIEELLDHSRDPVSLDMPVGADEEAPLGDFIEDAEATSAENTVLSNVMHSDV 254
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L +L+ RE+QV++LR+GLND +P++L++IGK F +S+E +R++E++ M KLR+
Sbjct: 255 RAVLATLEEREQQVIMLRFGLNDGQPRTLDQIGKRFGLSRERVRQIEREVMAKLREGRRA 314
Query: 526 RDLSHFLV 533
L + +
Sbjct: 315 DKLRSYAI 322
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 175/305 (57%), Gaps = 5/305 (1%)
Query: 220 PTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCW 275
P F+A+ L+ GR L E + K VQ + L K L G+ S W
Sbjct: 12 PPTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEW 71
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A+AA +S L ++L G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +
Sbjct: 72 AEAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
G E+FD T+GYKFSTY +WIR++I++ +A+ R I++P + +++KI+K ++ L+
Sbjct: 132 GVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQL 191
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEI 455
G+ E+AK + ++IR R S+D ++GD + + E D V SP
Sbjct: 192 GRSATPAEVAKALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAY 250
Query: 456 VMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515
+ ++ M++D+ +L L +++ VL +R+GLND + SL +IG+ ++S+E +R+LE +A
Sbjct: 251 ITQESMRQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQA 310
Query: 516 MTKLR 520
+ +L+
Sbjct: 311 LAQLK 315
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length = 348
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 178/329 (54%), Gaps = 16/329 (4%)
Query: 206 LSLPSEALQEGL--KQPTIFSAERALNSRGRR-LTIARNEAEMSKGVQVVANLERIKTTL 262
L + SE LQE L + P LN GR L A +E ++K ++ E + T
Sbjct: 31 LHVASERLQEDLDTQSPAADLVRVYLNGIGRTALLTAEDEVTLAKSIEAGLYAEHLINTS 90
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
E + + R LK + G R L+++ LV+ LA+ Y G GIP
Sbjct: 91 EGLTPQ-------------RRRELKAVVRDGRAARTHLLEANLRLVVSLAKRYTGRGIPL 137
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+++G+KFSTY +WIR++I++ VA +R I++P L +++
Sbjct: 138 LDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWWIRQAITRGVADQSRTIRLPVHLVEQVN 197
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + ++ L G+ E+++ TG+ I + R S+D +G A +
Sbjct: 198 KLSRIKRELHQQLGREATSEELSRETGIPEHRIADLLDHSRDPVSLDMPVGADEEAPLGD 257
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F D S + V+ + +DV +L +L E+QV+ LRYGL+D +P++L++IGK+F
Sbjct: 258 FIEDSEGASAENAVIAGFLHRDVRSVLATLSDSEQQVIRLRYGLDDGQPRTLDQIGKIFS 317
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+S+E +R++E++ M KLR+ + L +
Sbjct: 318 LSRERVRQIEREVMVKLRNGDRAERLRSY 346
>gi|313123888|ref|YP_004034147.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280451|gb|ADQ61170.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 373
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL + LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ G+KFSTY +W
Sbjct: 136 AKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYQLGFKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EIA L + ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKV 255
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K + +L++L R
Sbjct: 256 REVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDR 315
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D P++LEE+G++F V++E IR++E KA+ KLR L FL
Sbjct: 316 EENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFL 372
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 179/300 (59%), Gaps = 5/300 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ TL + G+ +L WA+A +S+ L++ +
Sbjct: 21 RVPLLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIRE 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+K ++ LT G+ EIA+ GL+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQQLGRSATTGEIAEELGLTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+IR E R+ S+D ++GD + + + D SP++ ++ M+ D+ I+ L
Sbjct: 201 KQIRECLERARLPLSLDLRVGDNQDTELGDLLEDTGA-SPEDYALQSSMRTDLESIMVDL 259
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+++QVL LR+GL D + +L +IG ++S+E +R++E++A++KLR + +D++ +L
Sbjct: 260 TPQQKQVLALRFGLEDGQTMTLSKIGAHLNISRERVRQIEREALSKLRKRK--QDMNDYL 317
>gi|442804827|ref|YP_007372976.1| RNA polymerase sigma factor RpoD [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740677|gb|AGC68366.1| RNA polymerase sigma factor RpoD [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 443
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 142/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 217 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIAD 276
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIA+ G+S+ ++R + +
Sbjct: 277 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAQEMGMSVEKVREIMKISQEPV 336
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L++L RE +VL LR+GL
Sbjct: 337 SLETPIGEEEDSHLGDFIPDDDAPAPDESAAFTLLKEQLMDVLDTLTPREEKVLRLRFGL 396
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F+V++E IR++E KA+ KLR + L +L
Sbjct: 397 DDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 442
>gi|453382635|dbj|GAC82930.1| RNA polymerase sigma factor SigB [Gordonia paraffinivorans NBRC
108238]
Length = 340
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 146/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 100 GEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 159
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 160 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELANESGIPA 219
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G+ A +F D S + V+ + D+ +L +L
Sbjct: 220 EKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAENAVIAGLLHSDIRAVLATL 279
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR E L +
Sbjct: 280 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRAGERAERLRAY 338
>gi|227544906|ref|ZP_03974955.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri CF48-3A]
gi|338204350|ref|YP_004650495.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri SD2112]
gi|227185118|gb|EEI65189.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri CF48-3A]
gi|336449590|gb|AEI58205.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri SD2112]
Length = 380
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP + + MKK + +L++L R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 160/274 (58%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSETDVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + E D SP+ ++ +++D+ +L L ++R+V+ LR+GL
Sbjct: 223 SLDVRVGDNQDTELQEMLEDDG-PSPEYYTTQEFLRQDLNTLLAELTPQQREVVALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 EDGNELSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|391228423|ref|ZP_10264629.1| RNA polymerase sigma factor, sigma-70 family [Opitutaceae bacterium
TAV1]
gi|391218084|gb|EIP96504.1| RNA polymerase sigma factor, sigma-70 family [Opitutaceae bacterium
TAV1]
Length = 595
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 144/244 (59%)
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
H+ + E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RGYKF
Sbjct: 323 HIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKF 382
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WIR++I++ +A AR I+IP + ++K+ + +K L G P E+A
Sbjct: 383 STYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADEM 442
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
L + ++ + + S+ +GD + + +F D+S ++P ++ +++ + +
Sbjct: 443 NLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIIDV 502
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L+SL RER+VL LR+GL D ++LEE+GK F V++E IR++E KA+ K+R R L
Sbjct: 503 LDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQL 562
Query: 529 SHFL 532
F
Sbjct: 563 HGFF 566
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTGL-SPEDYTAYSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|300812189|ref|ZP_07092631.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496825|gb|EFK31905.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 373
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL + LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ G+KFSTY +W
Sbjct: 136 AKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYQLGFKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EIA L + ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKV 255
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K + +L++L R
Sbjct: 256 REVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDR 315
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D P++LEE+G++F V++E IR++E KA+ KLR L FL
Sbjct: 316 EENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFL 372
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 140 GALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 199
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P L +++K+ + ++ + G+ P + E+A+ +G+
Sbjct: 200 TWWIRQAITRGMADQARTIRLPVHLVEQVNKLARIKRDMHQRQGREPSEAELAQESGIPE 259
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D + V+ + D+ R+L +L
Sbjct: 260 HKISDLLDHARDPVSLDMPVGSEEEAPLGDFIEDAEATDAENTVISSLLSDDLRRVLATL 319
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+ RE++V+ +R+GL+D +P++L++IG+ F +S+E +R++E++ M KLR E L +
Sbjct: 320 EDREQKVIRMRFGLDDGQPRTLDQIGRAFTLSRERVRQIEREVMAKLRVGERADKLRAY 378
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 173/288 (60%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ +A +++++ L G L WA AA +SE L+ +
Sbjct: 20 RVPLLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNR 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATIGELAQELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + E D + SP++ + ++ D+ R++ L
Sbjct: 200 KQVREYLERSRQPLSLDVRVGDNQDTELGELLED-TAASPEDFTSQASLRADLDRLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++RQVL LR+GL D +P +L ++G + ++S+E +R++E++A++KLR
Sbjct: 259 TPQQRQVLSLRFGLEDGQPLTLAKVGDMLNISRERVRQIEREALSKLR 306
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|365870954|ref|ZP_09410495.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679875|ref|YP_006521410.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
gi|414582578|ref|ZP_11439718.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|418247832|ref|ZP_12874218.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|418421133|ref|ZP_12994309.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709733|ref|ZP_14237201.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|420881197|ref|ZP_15344564.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420884840|ref|ZP_15348200.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420889538|ref|ZP_15352886.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420897176|ref|ZP_15360515.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899659|ref|ZP_15362991.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420905543|ref|ZP_15368861.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420910637|ref|ZP_15373949.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917089|ref|ZP_15380393.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922254|ref|ZP_15385551.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927916|ref|ZP_15391198.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932132|ref|ZP_15395407.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420938383|ref|ZP_15401652.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942390|ref|ZP_15405647.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420946950|ref|ZP_15410200.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952649|ref|ZP_15415893.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956818|ref|ZP_15420055.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961864|ref|ZP_15425089.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967525|ref|ZP_15430729.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420972741|ref|ZP_15435934.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|420978256|ref|ZP_15441434.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983641|ref|ZP_15446808.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420992777|ref|ZP_15455924.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998629|ref|ZP_15461766.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003066|ref|ZP_15466190.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421007918|ref|ZP_15471029.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013609|ref|ZP_15476690.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018559|ref|ZP_15481617.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024676|ref|ZP_15487720.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029721|ref|ZP_15492753.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035126|ref|ZP_15498146.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421050031|ref|ZP_15513025.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
gi|353452325|gb|EHC00719.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|363994757|gb|EHM15975.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997600|gb|EHM18811.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943614|gb|EIC67928.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|392080603|gb|EIU06429.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392086106|gb|EIU11931.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087286|gb|EIU13108.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392096488|gb|EIU22283.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392101006|gb|EIU26797.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392103447|gb|EIU29233.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392112631|gb|EIU38400.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392117730|gb|EIU43498.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392121229|gb|EIU46995.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132090|gb|EIU57836.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135149|gb|EIU60890.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136891|gb|EIU62628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143898|gb|EIU69623.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149817|gb|EIU75531.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392153980|gb|EIU79686.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157961|gb|EIU83658.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392165633|gb|EIU91319.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392166530|gb|EIU92215.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168637|gb|EIU94315.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392185561|gb|EIV11210.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186441|gb|EIV12088.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194524|gb|EIV20144.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199371|gb|EIV24981.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201957|gb|EIV27555.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208434|gb|EIV34008.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211473|gb|EIV37039.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224473|gb|EIV49993.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392225858|gb|EIV51373.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392238634|gb|EIV64127.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
gi|392249329|gb|EIV74804.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250032|gb|EIV75506.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253717|gb|EIV79185.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|395458140|gb|AFN63803.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
Length = 323
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 83 GNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 142
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A+ +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREASDEELAEESGIPV 202
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + + DV +L +L
Sbjct: 203 EKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAMSAENAVIAELLHSDVRSVLATL 262
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D + ++L++IGKLF +S+E +R++E++ M KLR + L +
Sbjct: 263 DEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDRAERLRSY 321
>gi|167750934|ref|ZP_02423061.1| hypothetical protein EUBSIR_01919 [Eubacterium siraeum DSM 15702]
gi|167656113|gb|EDS00243.1| RNA polymerase sigma factor RpoD [Eubacterium siraeum DSM 15702]
gi|291557421|emb|CBL34538.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum
V10Sc8a]
Length = 358
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 149/241 (61%), Gaps = 6/241 (2%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 120 YARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 179
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K++K L + +G P EIA G+++
Sbjct: 180 WIRQAITRSIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDR 239
Query: 415 IRSASECLRIVG---SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
+R E LRI S++ IG+ ++ +F PD +P E R +K+ + IL +
Sbjct: 240 VR---EILRISQDPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAASRTLLKEQLSEILGT 296
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
L RE +VL LR+GL D RP++LEE+GK F V++E IR++E KA+ KLR + L F
Sbjct: 297 LTPREEKVLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDF 356
Query: 532 L 532
L
Sbjct: 357 L 357
>gi|258653916|ref|YP_003203072.1| RNA polymerase sigma factor SigB [Nakamurella multipartita DSM
44233]
gi|258557141|gb|ACV80083.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella
multipartita DSM 44233]
Length = 334
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 139/228 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+ + LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 94 GGRARNHLLVANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A R I++P L +++K+ + ++ L G+ E+A +G+
Sbjct: 154 TWWIRQAISRGMADQGRTIRLPVHLVEQVNKLSRLKRELHQQLGRDATLAELAHESGIPE 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ M D+ R+L +L
Sbjct: 214 EKIADLLDHARDPVSLDMPVGSDEEAPLGDFIEDSESTSAEAAVVAGFMHDDINRVLRTL 273
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D RE+ V+ LRYGL+D RP++L+EIG+ F +S+E +R++E+ +M KLR
Sbjct: 274 DDREQTVVRLRYGLDDGRPRTLDEIGRHFGISRERVRQIERDSMAKLR 321
>gi|418463311|ref|ZP_13034327.1| RNA polymerase sigma factor SigB [Saccharomonospora azurea SZMC
14600]
gi|359733714|gb|EHK82704.1| RNA polymerase sigma factor SigB [Saccharomonospora azurea SZMC
14600]
Length = 313
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 146/231 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 73 GEQAKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYA 132
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ + E+A +G++
Sbjct: 133 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIAE 192
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+++ S + R S+D +G +A +F D + V+ + D+ R+L +L
Sbjct: 193 SKVASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAESTVISTLLSDDLRRVLATL 252
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D RE+QV+ LRYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E
Sbjct: 253 DDREQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMSKLRHGE 303
>gi|373850334|ref|ZP_09593135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Opitutaceae
bacterium TAV5]
gi|372476499|gb|EHP36508.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Opitutaceae
bacterium TAV5]
Length = 595
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 144/244 (59%)
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
H+ + E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RGYKF
Sbjct: 323 HIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKF 382
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WIR++I++ +A AR I+IP + ++K+ + +K L G P E+A
Sbjct: 383 STYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADEM 442
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
L + ++ + + S+ +GD + + +F D+S ++P ++ +++ + +
Sbjct: 443 NLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIIDV 502
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L+SL RER+VL LR+GL D ++LEE+GK F V++E IR++E KA+ K+R R L
Sbjct: 503 LDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQL 562
Query: 529 SHFL 532
F
Sbjct: 563 HGFF 566
>gi|381162257|ref|ZP_09871487.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254162|gb|EHY88088.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 343
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 148/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 103 GEQAKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYA 162
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ + E+A +G++
Sbjct: 163 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIAE 222
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+++ S + R S+D +G +A +F D + V+ + D+ R+L +L
Sbjct: 223 SKVASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAESTVISTLLSDDLRRVLATL 282
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E L +
Sbjct: 283 DDREQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMSKLRHGERADRLRAY 341
>gi|194467797|ref|ZP_03073783.1| RNA polymerase, sigma 70 subunit, RpoD family [Lactobacillus
reuteri 100-23]
gi|194452650|gb|EDX41548.1| RNA polymerase, sigma 70 subunit, RpoD family [Lactobacillus
reuteri 100-23]
Length = 380
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP + + MKK + +L++L R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|385682350|ref|ZP_10056278.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 341
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 149/239 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+++G+KFSTY
Sbjct: 101 GHKAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 160
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ + E+A +G+++
Sbjct: 161 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNEELAAESGIAV 220
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 221 EKVADLLDHARDPVSLDMPVGTDEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 280
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E L +
Sbjct: 281 DEREQQVIRMRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGERAERLRAY 339
>gi|291531112|emb|CBK96697.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum 70/3]
Length = 358
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 149/241 (61%), Gaps = 6/241 (2%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 120 YARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 179
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K++K L + +G P EIA G+++
Sbjct: 180 WIRQAITRSIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDR 239
Query: 415 IRSASECLRIVG---SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
+R E LRI S++ IG+ ++ +F PD +P E R +K+ + IL +
Sbjct: 240 VR---EILRISQDPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAASRTLLKEQLSEILGT 296
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
L RE +VL LR+GL D RP++LEE+GK F V++E IR++E KA+ KLR + L F
Sbjct: 297 LTPREEKVLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDF 356
Query: 532 L 532
L
Sbjct: 357 L 357
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 176/296 (59%), Gaps = 2/296 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E + L +E + + W QA G +++ + L G +
Sbjct: 73 AQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGRTAK 132
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 133 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 192
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A AR I++P + +++K++KA++ L + P + E+A +S +++R
Sbjct: 193 QAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELADELEVSPSQLRQ 252
Query: 418 ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRE 476
+ R S++ ++G + + ++ D+ ++ P+E++ ++ +V +L + L RE
Sbjct: 253 LLQLRRQSLSLNHRVGKGEDTELVDLLEDQELQLPEELMNEGMLRYEVSAVLSDVLTQRE 312
Query: 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ V+ LRYGL +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 313 KDVISLRYGLCTAQPHTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 368
>gi|309791990|ref|ZP_07686468.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225984|gb|EFO79734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 396
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 160/277 (57%), Gaps = 3/277 (1%)
Query: 257 RIKTTLEKESGKAASLNCWAQAAGVSERV-LKQHLAFGWYCREELIKSTRPLVLFLARNY 315
R+ T+E+ G+ A + +E V L++ + G R+++ + LV+ +A+ Y
Sbjct: 119 RLAQTIER--GQKAQVKIKDLDPTSAEAVELRRQIEKGNDARQQMAAANLRLVVSIAKRY 176
Query: 316 RGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPC 375
R G+P DL+Q G++G+L+ E+FDH +G+KFSTY +WI++++S+ +A +R +++P
Sbjct: 177 RDRGLPLLDLIQEGSLGLLRAIEKFDHDKGFKFSTYATWWIKQALSRALADQSRLVRLPV 236
Query: 376 KLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDC 435
L +++IQ AR+ LT G+ P D E+A +S ++R + S+ +G+
Sbjct: 237 HLGETLNRIQAARRQLTQRLGREPYDSELADELSMSQEKLRELRRTAQDPVSLATPVGEE 296
Query: 436 LNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLE 495
++ +F PD + +++ + L+ L RER+VL LRYGL D +P++LE
Sbjct: 297 ADSTLADFIPDPHALDADDAAASGMLRQQIATALDQLTERERKVLELRYGLTDGQPRTLE 356
Query: 496 EIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+GK F V++E +R++E KA+ KLR + L +L
Sbjct: 357 EVGKAFGVTRERVRQIEVKALRKLRHPRLGKLLKDYL 393
>gi|148543974|ref|YP_001271344.1| RNA polymerase sigma factor RpoD [Lactobacillus reuteri DSM 20016]
gi|184153369|ref|YP_001841710.1| RNA polymerase sigma factor RpoD [Lactobacillus reuteri JCM 1112]
gi|227364887|ref|ZP_03848933.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri MM2-3]
gi|325682488|ref|ZP_08162005.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri MM4-1A]
gi|148531008|gb|ABQ83007.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus reuteri DSM
20016]
gi|183224713|dbj|BAG25230.1| RNA polymerase sigma-43 factor RpoD [Lactobacillus reuteri JCM
1112]
gi|227070091|gb|EEI08468.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri MM2-3]
gi|324978327|gb|EGC15277.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
reuteri MM4-1A]
Length = 380
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP + + MKK + +L++L R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 168/293 (57%), Gaps = 3/293 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L ++ + +L+ WA A + L++ L
Sbjct: 20 RFPLLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GQTANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N +++K++K ++ L+ + P E+A LS
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLNKLRKVKRQLSLKLHRDPTVAELATEMELSP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ + R S+D ++GD N + E D SP++ +++ D+ ++L L
Sbjct: 200 KKVEAFLSYARHSISLDVQVGDQQNTELWELLEDPHA-SPEDYATASYLQSDLAKLLNVL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+ ++R+V+ LRYGL D P +L ++G+ +VS+EW+R++E++A LR +
Sbjct: 259 NPQQREVITLRYGLIDQNPLTLAKVGERLNVSREWVRRVEREAFQLLRSQKVV 311
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 164/274 (59%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L ++ L KE + + W+ AG+SE + + + G ++++I++
Sbjct: 48 KKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
++R I++P + +++KI+K ++ L +G+ EIAK L ++IR R
Sbjct: 168 NSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATPTEIAKALDLEPSQIRDYLLASRHPV 227
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + + D S S V +Q +++D+ ++ L ++R+VL LRYGL
Sbjct: 228 SLDLRVGDNQDTELQDLLEDESA-SADNYVTQQLLRQDLKDLMADLTPQQREVLTLRYGL 286
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
ND + SL ++G ++S+E +R+LE +A+ LR
Sbjct: 287 NDGKEMSLSKVGVHMNISRERVRQLENQALNHLR 320
>gi|298246437|ref|ZP_06970243.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297553918|gb|EFH87783.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 422
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 160/284 (56%), Gaps = 9/284 (3%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
V ++ E I+ E GKA L +SE G ++ L ++ LV
Sbjct: 147 VPLLTAHEEIRLAQLMERGKAERLKPAPNYRYISE---------GEEAQKRLTEANLRLV 197
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
+ +A+ Y G G+ DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A A
Sbjct: 198 VSVAKKYIGRGMNLLDLIQEGNIGLIRAVEKFDYNKGFKFSTYATWWIRQAITRAIADQA 257
Query: 369 RGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI 428
R I+IP + I+++ + + L G+ P EIA +S ++R + + S+
Sbjct: 258 RTIRIPVHMVETINRLIRISRRLLQDLGREPTSEEIAAQMEISAEKVREIIKVSQEPVSL 317
Query: 429 DQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLND 488
+ IG+ ++ +F D + +P + Q +K+ V +L+SL RER+VL LR+GL+D
Sbjct: 318 ETPIGEEDDSHLGDFIEDHTALAPADAASHQLLKEQVEDVLDSLTERERKVLQLRFGLDD 377
Query: 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
R ++LEE+GK FHV++E IR++E KA+ KLR R L +L
Sbjct: 378 GRSRTLEEVGKEFHVTRERIRQIEAKALRKLRHPSRSRKLKDYL 421
>gi|423332763|ref|ZP_17310545.1| RNA polymerase sigma-43 factor RpoD [Lactobacillus reuteri ATCC
53608]
gi|337727881|emb|CCC02969.1| RNA polymerase sigma-43 factor RpoD [Lactobacillus reuteri ATCC
53608]
Length = 380
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP + + MKK + +L++L R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 177/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L+ + G S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTGL-SPEDYTAYSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ +L E G+ AS A ++E+ L+ L G + ++I
Sbjct: 85 EVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRVAKRKMI 144
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 145 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 204
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +++ ++R +
Sbjct: 205 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLSRNPSEAEMAEALEITVQQLRQLQQL 264
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D +SP+ + M+++++ +L + L RE+ V+
Sbjct: 265 RRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVLGDVLTPREKDVI 324
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 325 SLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 377
>gi|419716788|ref|ZP_14244183.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|420864424|ref|ZP_15327814.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869215|ref|ZP_15332597.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873659|ref|ZP_15337036.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420987323|ref|ZP_15450479.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|421039706|ref|ZP_15502715.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421044014|ref|ZP_15507015.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|382940349|gb|EIC64673.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|392068685|gb|EIT94532.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071399|gb|EIT97245.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072687|gb|EIT98528.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392181602|gb|EIV07253.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392224798|gb|EIV50317.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392237866|gb|EIV63360.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
Length = 323
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 83 GNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 142
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A+ +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREATDEELAEESGIPV 202
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + + DV +L +L
Sbjct: 203 EKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAMSAENAVIAELLHSDVRSVLATL 262
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D + ++L++IGKLF +S+E +R++E++ M KLR + L +
Sbjct: 263 DEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDRAERLRSY 321
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 176/289 (60%), Gaps = 4/289 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E+ +K +Q V +L IK +L E + G+ S + WA+AA +S R L++ +
Sbjct: 19 RVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIK 78
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 79 EGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTY 138
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A++ L+
Sbjct: 139 AYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAASIAELAEHLELT 198
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
++R E R S+D ++GD + + + D P++ ++ D+ ++
Sbjct: 199 PKQVREYLERSRHPLSLDLRVGDNQDTELGDLLEDDG-PLPEDFATYASLQLDLDSLMAE 257
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
L ++R+VL+LR+GLND +P +L IG + +S+E +R++E++A+ KLR
Sbjct: 258 LTPQQREVLILRFGLNDGQPLTLASIGSMLSISRERVRQIEREALNKLR 306
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 166/290 (57%), Gaps = 6/290 (2%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGVS-ERVLKQHLA----FGWYCREELIK 302
V ++ E I ++ E+G AA A+ G+ ER K+ L G +++LI+
Sbjct: 118 VPLLTAAEEIDLAMKIEAGVAAMEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLIE 177
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 178 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 237
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
+A AR I+IP + I+K+ + ++ L G+ P EI K GL +R +
Sbjct: 238 AIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKIS 297
Query: 423 RIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVL 482
+ S++ IG+ +++ +F D + P + +++ + ++L+ L RER+V+ L
Sbjct: 298 QEPVSLETPIGEEEDSQLGDFIEDDAAVVPPDAASFSMLQEQLSKVLDGLAERERKVISL 357
Query: 483 RYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
R+GL D P++LEE+G+ F V++E IR++E K + KLR L +L
Sbjct: 358 RFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDYL 407
>gi|118475308|ref|YP_891711.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp. fetus
82-40]
gi|118414534|gb|ABK82954.1| RNA polymerase sigma factor [Campylobacter fetus subsp. fetus
82-40]
Length = 623
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 146/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 387 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 446
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA+ GLS+ +++
Sbjct: 447 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSIIAREVGLSIDKVKQVI 506
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + KY +F D++ SP E +++ +K+ + +L+ L+ RE+ V
Sbjct: 507 KITKEPISLEAPIGSEDDGKYGDFVEDKTTLSPMEQILKGDLKEQIDEVLDQLNDREKAV 566
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 567 IRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 620
>gi|453363975|dbj|GAC80290.1| RNA polymerase sigma factor SigB [Gordonia malaquae NBRC 108250]
Length = 332
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 144/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ AE+FD+ +G+KFSTY
Sbjct: 92 GDAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAAEKFDYAKGFKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A +R I++P L +++K+ + R+ L G+ D E+A +G+
Sbjct: 152 TWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDDELAAESGIPA 211
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + +V+ + D+ +L +L
Sbjct: 212 EKIADLMDHSRDPVSLDMPVGSDEEAPLGDFIEDSEATSAETVVIANLLHSDIRLVLGTL 271
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+ V+ +R+GL+D +P++L++IG+ F +S+E +R++E+ M KLR + L +
Sbjct: 272 DEREQAVITMRFGLDDGQPRTLDQIGRAFGLSRERVRQIERDVMGKLRQGDRADKLRAY 330
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 177/299 (59%), Gaps = 1/299 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + + L+++SG S A ++ER L+ L G
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + +E+FD +GYKFSTY +W
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 208
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + +++K++KA++ L G+ P +IE+A+ + +++
Sbjct: 209 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLGRNPSEIELAESLEIPPSQL 268
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDS 474
R + R S++ ++G + + ++ D +SP+ + M+++++ +L + L
Sbjct: 269 RQLQQLRRQSLSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNESMMRQEIWEVLGDVLTP 328
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
RE+ V+ LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +LV
Sbjct: 329 REKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLV 387
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTGL-SPEDYTAYSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|419643191|ref|ZP_14174950.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni ATCC 33560]
gi|380622903|gb|EIB41636.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni ATCC 33560]
Length = 622
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSIDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|385815881|ref|YP_005852272.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|325125918|gb|ADY85248.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 373
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL + LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ G+KFSTY +W
Sbjct: 136 AKDELTNANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EIA L + ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKV 255
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R A + + S++ IG+ ++ +F D+ SP++ + ++ + +L++L R
Sbjct: 256 REALKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLRDQLAEVLDTLTDR 315
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D P++LEE+G++F V++E IR++E KA+ KLR L FL
Sbjct: 316 EENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFL 372
>gi|227529171|ref|ZP_03959220.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
vaginalis ATCC 49540]
gi|227350896|gb|EEJ41187.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
vaginalis ATCC 49540]
Length = 380
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP + + MKK + +L++L R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|322421611|ref|YP_004200834.1| RpoD subfamily RNA polymerase sigma-70 factor [Geobacter sp. M18]
gi|320127998|gb|ADW15558.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter sp.
M18]
Length = 583
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 164/280 (58%), Gaps = 10/280 (3%)
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
ANL++I E+ESG AS A A + E K LA + EL+++ LV+ +A
Sbjct: 313 ANLKKI----EQESGFKASELANALLA-IEEGEHKAKLA-----KSELVEANLRLVVSIA 362
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+
Sbjct: 363 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIR 422
Query: 373 IPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKI 432
IP + I+K+ + + L G+ P EIA+ L L ++R + + S++ I
Sbjct: 423 IPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMALPLDKVRKVLKIAKEPISLETPI 482
Query: 433 GDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPK 492
G+ ++ +F D+ V SP E V++ ++ + R+L +L RE +VL +R+G+ +
Sbjct: 483 GEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTSRVLSTLTPREEKVLRMRFGIGEKSDH 542
Query: 493 SLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+LEE+G+ F V++E IR++E KA+ KLR + L F+
Sbjct: 543 TLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLKSFV 582
>gi|375101508|ref|ZP_09747771.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662240|gb|EHR62118.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 343
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 103 GERAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYA 162
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ + E+A +G++
Sbjct: 163 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIAE 222
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ S + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 223 TKVASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAESTVISTLLQDDLRRVLATL 282
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ LRYGL+D +P++L++IGK F +S+E +R++E++ M KLR E L +
Sbjct: 283 DDREQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMAKLRHGERADRLRAY 341
>gi|424844271|ref|ZP_18268882.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
gi|363985709|gb|EHM12539.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
Length = 805
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+I + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 568 AKDEIINANLRLVVSIAKKYIGRGMQFLDLIQEGNLGLIRAVEKFDYRRGFKFSTYATWW 627
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P D EIA + +
Sbjct: 628 IRQAITRAIADQARTIRIPVHMVETINKMVRISRQLVQKLGREPSDEEIAAEMKIEPERV 687
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ S++ IG+ +++ +F DRS+ SP+++ +++ + +L +L R
Sbjct: 688 EEIKRISQMPVSLETPIGEEEDSQLGDFIEDRSLPSPEDVAADNLLQEQIEEMLNALSDR 747
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL R+GL D R +LEE+G+ F V++E IR++E KA+ KLR + L FL
Sbjct: 748 EREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKLRDFL 804
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D K+GD + + E D + SP++ ++ D+ +++ L
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDPGL-SPEDYTAYSSLQVDLEKLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V+ LR+GL++ +P +L +IG ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQKEVICLRFGLDNGQPLTLAKIGVRLNISRERVRQIEREAIAKLR 306
>gi|116514229|ref|YP_813135.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093544|gb|ABJ58697.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 372
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ G+KFSTY +W
Sbjct: 135 AKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ G+ PE EIA L + ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQFLQDLGRDPEPEEIAAEMDLPVKKV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R A + + S++ IG+ ++ +F D+ SP++ + +K + +L++L R
Sbjct: 255 REALKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDR 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D P++LEE+G++F V++E IR++E KA+ KLR L FL
Sbjct: 315 EENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFL 371
>gi|289450258|ref|YP_003475183.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184805|gb|ADC91230.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 353
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 159/270 (58%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK LN E+ L + + G ++ L ++ LV+ +A+ Y G G+ F
Sbjct: 89 KEIGKVPLLNAE------EEKDLARAMKEGSQEAKDRLCEANLRLVVSIAKRYVGRGMQF 142
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ ++FD+ +G+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 143 LDLIQEGNLGLIKAVDKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 202
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + ++ L G+ PE E+A+ G+S ++R + + S+++ IG+ ++ +
Sbjct: 203 KLIRVQRQLLQELGREPEVEELAQEMGISPEKVREIQKISQEPVSLEKPIGEEEDSHLGD 262
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F PD SP + +K+ + IL L RE +VL LR+GL+D R ++LEE+G+ F+
Sbjct: 263 FIPDDDAPSPADQAAFTLLKEQLLEILSGLTPREEKVLRLRFGLDDGRSRTLEEVGREFN 322
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ K+R + L +L
Sbjct: 323 VTRERIRQIEAKALRKMRHPSRSKKLKDYL 352
>gi|2764713|emb|CAA05353.1| sigma 70 [Campylobacter jejuni]
Length = 622
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|57237826|ref|YP_179074.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni RM1221]
gi|86150708|ref|ZP_01068924.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86152585|ref|ZP_01070790.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121612947|ref|YP_001000680.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157415258|ref|YP_001482514.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81116]
gi|167005602|ref|ZP_02271360.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|205356712|ref|ZP_03223473.1| RNA polymerase sigma factor (sigma 70) [Campylobacter jejuni subsp.
jejuni CG8421]
gi|315124489|ref|YP_004066493.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|415745354|ref|ZP_11474810.1| Phosphatidylserine decarboxylase [Campylobacter jejuni subsp.
jejuni 327]
gi|419618734|ref|ZP_14152265.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 129-258]
gi|419634754|ref|ZP_14167081.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 55037]
gi|419652763|ref|ZP_14183822.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-894]
gi|419653797|ref|ZP_14184758.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|419658496|ref|ZP_14189124.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|419660252|ref|ZP_14190731.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|419664739|ref|ZP_14194818.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|419669090|ref|ZP_14198886.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-11]
gi|419686801|ref|ZP_14215224.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1798]
gi|419688243|ref|ZP_14216570.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1854]
gi|419696468|ref|ZP_14224324.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23210]
gi|419698309|ref|ZP_14226026.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23211]
gi|424847537|ref|ZP_18272103.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NW]
gi|424850423|ref|ZP_18274836.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni D2600]
gi|57166630|gb|AAW35409.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni RM1221]
gi|85841878|gb|EAQ59124.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843470|gb|EAQ60680.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249244|gb|EAQ72205.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157386222|gb|ABV52537.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81116]
gi|205345450|gb|EDZ32092.1| RNA polymerase sigma factor (sigma 70) [Campylobacter jejuni subsp.
jejuni CG8421]
gi|315018211|gb|ADT66304.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315932129|gb|EFV11072.1| Phosphatidylserine decarboxylase [Campylobacter jejuni subsp.
jejuni 327]
gi|356485168|gb|EHI15170.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NW]
gi|356487105|gb|EHI17078.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni D2600]
gi|380594377|gb|EIB15176.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 129-258]
gi|380614048|gb|EIB33497.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 55037]
gi|380628125|gb|EIB46460.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-894]
gi|380632119|gb|EIB50237.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|380633391|gb|EIB51350.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|380637213|gb|EIB54861.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|380644419|gb|EIB61601.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|380647961|gb|EIB64844.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-11]
gi|380663543|gb|EIB79178.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1798]
gi|380666110|gb|EIB81664.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1854]
gi|380674237|gb|EIB89181.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23210]
gi|380675471|gb|EIB90374.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23211]
Length = 622
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 178/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+GK + + WA+AA +S + +
Sbjct: 20 RVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D +SP++ ++ D+ +++E L
Sbjct: 200 KQVRDYLERSRQPLSLDLRVGDNQDTELGDLLEDEG-QSPEDFATHSSLQFDLEKLMEDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++QV+ LR+GL D +P +L +IG ++S+E +R++E++A++KLR
Sbjct: 259 TIQQKQVIALRFGLMDGQPLTLAKIGSRLNISRERVRQIEREALSKLR 306
>gi|419682848|ref|ZP_14211567.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1213]
gi|380660859|gb|EIB76793.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1213]
Length = 622
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|86150479|ref|ZP_01068704.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596833|ref|ZP_01100070.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 84-25]
gi|148926089|ref|ZP_01809775.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni CG8486]
gi|218562617|ref|YP_002344396.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|384443357|ref|YP_005659609.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni S3]
gi|384448250|ref|YP_005656301.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni IA3902]
gi|403055740|ref|YP_006633145.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168-BN148]
gi|407942388|ref|YP_006858030.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni PT14]
gi|415730018|ref|ZP_11472777.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|419620650|ref|ZP_14154072.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51494]
gi|419623441|ref|ZP_14156569.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23218]
gi|419628307|ref|ZP_14161174.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23263]
gi|419630036|ref|ZP_14162743.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 60004]
gi|419631185|ref|ZP_14163780.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23264]
gi|419636726|ref|ZP_14168916.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9879]
gi|419638535|ref|ZP_14170595.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 86605]
gi|419645079|ref|ZP_14176642.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|419647136|ref|ZP_14178575.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 53161]
gi|419648514|ref|ZP_14179853.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9217]
gi|419649899|ref|ZP_14181130.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-1025]
gi|419656582|ref|ZP_14187370.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-988]
gi|419661347|ref|ZP_14191674.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|419664484|ref|ZP_14194631.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-4]
gi|419666681|ref|ZP_14196674.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-10]
gi|419671602|ref|ZP_14201255.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|419674574|ref|ZP_14203861.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 110-21]
gi|419678056|ref|ZP_14207158.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87330]
gi|419678314|ref|ZP_14207374.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87459]
gi|419680718|ref|ZP_14209572.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 140-16]
gi|419690985|ref|ZP_14219170.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1893]
gi|419692129|ref|ZP_14220228.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1928]
gi|85839074|gb|EAQ56338.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88191674|gb|EAQ95646.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360323|emb|CAL35119.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|145845568|gb|EDK22660.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni CG8486]
gi|284926231|gb|ADC28583.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315058444|gb|ADT72773.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni S3]
gi|315928360|gb|EFV07675.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|380599113|gb|EIB19493.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51494]
gi|380600963|gb|EIB21286.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23218]
gi|380604951|gb|EIB24943.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23263]
gi|380606452|gb|EIB26364.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 60004]
gi|380611301|gb|EIB30855.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23264]
gi|380616752|gb|EIB35941.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9879]
gi|380618603|gb|EIB37727.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 86605]
gi|380621005|gb|EIB39847.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|380621833|gb|EIB40614.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 53161]
gi|380626343|gb|EIB44820.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9217]
gi|380629159|gb|EIB47430.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-1025]
gi|380634705|gb|EIB52571.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-988]
gi|380640434|gb|EIB57891.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|380640931|gb|EIB58354.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-4]
gi|380647269|gb|EIB64191.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-10]
gi|380649180|gb|EIB65933.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|380652252|gb|EIB68749.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87330]
gi|380652855|gb|EIB69311.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 110-21]
gi|380659712|gb|EIB75679.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 140-16]
gi|380661003|gb|EIB76927.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87459]
gi|380667836|gb|EIB83238.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1893]
gi|380670866|gb|EIB86110.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1928]
gi|401781392|emb|CCK67096.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168-BN148]
gi|407906226|gb|AFU43055.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni PT14]
Length = 622
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|256375630|ref|YP_003099290.1| RNA polymerase sigma factor SigB [Actinosynnema mirum DSM 43827]
gi|255919933|gb|ACU35444.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 330
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 176/327 (53%), Gaps = 16/327 (4%)
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRR-LTIARNEAEMSKGVQV-VANLERIKTTLEK 264
S PS L + P LN G+ L A E E++K ++ V ++TT
Sbjct: 16 SAPSVDLDLDAQGPAADLVRVYLNGIGKTALLTAAQEVELAKRIEAGVFAHHVLETTTAL 75
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
+G+A L + G + L+++ LV+ LA+ Y G G+P D
Sbjct: 76 NAGRADELRALVRD--------------GLRAKNHLLEANLRLVVSLAKRYTGRGMPLLD 121
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384
L+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A R I++P L +++K+
Sbjct: 122 LIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKL 181
Query: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFA 444
+ ++ L G+ + E+A +GLS ++ + R S+D +G +A +F
Sbjct: 182 ARIKRDLHQQLGREATNEELAAESGLSPTKVSDLLDHARDPVSLDMPVGAEEDAPLGDFI 241
Query: 445 PDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVS 504
D + V+ ++ D+ R+L +L+ RE+ V+ LRYGL D +P++L++IGK F +S
Sbjct: 242 EDSDATDAESAVISGLLQDDLRRVLATLEQREQAVIRLRYGLEDGQPRTLDQIGKQFGLS 301
Query: 505 KEWIRKLEKKAMTKLRDSETCRDLSHF 531
+E +R++E++ M+KLR E L +
Sbjct: 302 RERVRQIEREVMSKLRQGERAAKLRAY 328
>gi|118581452|ref|YP_902702.1| RpoD family RNA polymerase sigma factor [Pelobacter propionicus DSM
2379]
gi|118504162|gb|ABL00645.1| RNA polymerase, sigma 70 subunit, RpoD [Pelobacter propionicus DSM
2379]
Length = 582
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 163/272 (59%), Gaps = 8/272 (2%)
Query: 262 LEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
+E ESG KA+ L+ QA + E K +A + ELI++ LV+ +A+ Y G+
Sbjct: 317 IELESGFKASELSAALQA--IEEGECKARIA-----KSELIEANLRLVVSIAKKYTNRGL 369
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNRE 380
F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP +
Sbjct: 370 QFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIET 429
Query: 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
I+K+ + + L +G+ P EIA+ L L ++R + + S++ IG+ ++
Sbjct: 430 INKLIRTSRQLVQENGREPAPEEIAERMQLPLDKVRKVLKIAKEPISLETPIGEEEDSHL 489
Query: 441 LEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKL 500
+F D++V SP E V++ ++ + R+L +L RE +VL +R+G+ + +LEE+G+
Sbjct: 490 GDFIEDKAVISPIEAVIKANLSEQTSRVLSTLTPREEKVLRMRFGIGEKSDHTLEEVGQD 549
Query: 501 FHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
F V++E IR++E KA+ KLR + L F+
Sbjct: 550 FAVTRERIRQIEAKALRKLRHPSRSKKLKSFV 581
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 168/292 (57%), Gaps = 1/292 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+++ +E + + + A A G +E L+Q L + +I
Sbjct: 175 EIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARAAKRRMI 234
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR+ I+
Sbjct: 235 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGIT 294
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P ++E+A ++ ++R+ +
Sbjct: 295 RTIANDARTIRLPIHIVEKLNKLKKAQRELRKELQRTPTEVEVAAALEMTPEQLRTLQQV 354
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + +E D + SP+ + M++++ +L E L RE++++
Sbjct: 355 QRKSLSLNHRVGKGEDTELMELLEDGNSLSPESQISESMMRQEISDVLTEVLTEREKEII 414
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
LRYGL +LEE+G +F +S+E +R+++ KAM KLR + L ++L
Sbjct: 415 ALRYGLTTGETHTLEEVGGIFQLSRERVRQIQTKAMRKLRRPQVAARLKNWL 466
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 177/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L+ + TLE+ + A+ WA+AA ++ + L++ L
Sbjct: 29 RVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQLQRDLQI 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQLAQDLGRAATIAEIAEALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D ++GD + + ++ D S +SP V + +K+D+ ++ L
Sbjct: 209 AQIREYFRVSRHPISLDVRVGDNQDTELMDLLED-SGESPDNNVTYELLKQDLRDLIADL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V++LR+GLND + SL +IGK ++S+E +R+LE++A+ LR
Sbjct: 268 TPQQQEVIILRFGLNDGKELSLAKIGKRMNLSRERVRQLERQALNHLR 315
>gi|373106378|ref|ZP_09520681.1| RNA polymerase sigma factor RpoD [Stomatobaculum longum]
gi|371652753|gb|EHO18161.1| RNA polymerase sigma factor RpoD [Stomatobaculum longum]
Length = 413
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 148/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD +G+K STY +W
Sbjct: 177 AKKKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDPEKGFKLSTYATWW 236
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+AK ++ ++
Sbjct: 237 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVAELAKALDMTEEKV 296
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ R S++ IG+ ++ +F D +V +P++ V +++ + +L L R
Sbjct: 297 MEIMQIAREPASLETPIGEEDDSNLGDFVADNNVLTPEDNVESVMLREHIEALLGDLKER 356
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ERQV+VLR+GL D P++LEE+G+ F V++E IR++E KA+ KLR+ + + FL
Sbjct: 357 ERQVIVLRFGLEDGHPRTLEEVGREFKVTRERIRQIEAKALRKLRNPVRSKRIRDFL 413
>gi|430742509|ref|YP_007201638.1| sigma-70 family RNA polymerase sigma factor [Singulisphaera
acidiphila DSM 18658]
gi|430014229|gb|AGA25943.1| RNA polymerase sigma factor, sigma-70 family [Singulisphaera
acidiphila DSM 18658]
Length = 556
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFSTY +WIR++I++ +A
Sbjct: 327 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIAD 386
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + +SK++ K L G+ P E AK +S+ E R + R
Sbjct: 387 QARTIRIPVHMIETMSKLRNVSKKLLQEKGREPTIEETAKAANISIEETRRVMKISRHPI 446
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D+ +G+ ++ + +F D + +SP ++ +K+ + ++L++L RER+++ LRYGL
Sbjct: 447 SLDRPVGESEDSYFGDFIEDEAAESPINAATQEMLKEKIDQVLKTLTYREREIIKLRYGL 506
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G++F V++E +R++E KA+ KL+ R L FL
Sbjct: 507 GDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFL 552
>gi|384441617|ref|YP_005657920.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni M1]
gi|307747900|gb|ADN91170.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni M1]
Length = 622
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 157/274 (57%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ G SL WA SE + Q + G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQSENEVTQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPTEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + E D SP+ ++ +++D+ +L L ++R+V+ LR+GL
Sbjct: 223 SLDVRVGDNQDTELQEMLEDDG-PSPEYYTTQEFLRQDLNNLLAELTPQQREVVALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 EDGNELSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+S G V+ + L+ +K +L ++ G+ + + WA A+ +++ LK +A
Sbjct: 20 RVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATASCLTDSQLKSSIAV 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRTATISELAIELNLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S++ ++GD + + +E D + P++ V + M+ D+ + ++ L
Sbjct: 200 DQLREYFEQARQPLSLELRVGDNKDTELVELLED-TGPGPEDFVNQSLMQLDLEKFMDDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++RQVL LRYGL + P +L +IG+ ++S+E +R++E++A+ KLR
Sbjct: 259 TPQQRQVLRLRYGLAEVEPMTLAKIGQHLNISRERVRQIEREAIAKLR 306
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 377
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 182/342 (53%), Gaps = 18/342 (5%)
Query: 194 ARVSEESIETSLLSLPSEALQEG---LKQPTIFSAERALNSRGRR-LTIARNEAEMSKGV 249
A VS+E ET + PS EG + P LN GR L A +E E++K +
Sbjct: 48 AAVSDEEPETQDAA-PSGRYAEGDLDTQSPAADLVRVYLNGIGRTALLTAADEVELAKSI 106
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVL 309
+ E + T S N Q R LK G R L+++ LV+
Sbjct: 107 EAGLYAEHLLKT---------SDNLTPQ----RRRELKTVARDGQAARTHLLEANLRLVV 153
Query: 310 FLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHAR 369
LA+ Y G GIP DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ VA +R
Sbjct: 154 SLAKRYTGRGIPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGVADQSR 213
Query: 370 GIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSID 429
I++P L +++K+ + ++ L G+ E+++ TG+ I + R S+D
Sbjct: 214 TIRLPVHLVEQVNKLSRIKRELHQQLGREATSEELSRETGIPEHRIADLLDHSRDPVSLD 273
Query: 430 QKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDH 489
+G A +F D S + V+ + +DV +L +L+ E+QV+ LRYGL+D
Sbjct: 274 MPVGADEEAPLGDFIEDSEGASAENAVIAGFLHRDVRTVLATLNEVEQQVIRLRYGLDDG 333
Query: 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+P++L++IGK+F +S+E +R++E++ M KLR+ + L +
Sbjct: 334 QPRTLDQIGKVFSLSRERVRQIEREVMVKLRNGDRAERLRSY 375
>gi|421739056|ref|ZP_16177384.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|406692448|gb|EKC96141.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 357
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 180/332 (54%), Gaps = 29/332 (8%)
Query: 208 LPSEALQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+P+ + Q G P +F + L GR L A +E E+++ V E+
Sbjct: 47 VPAGSEQAGAAAPDLF--RQYLREIGRIPLLSAADEVELARRV---------------EA 89
Query: 267 G--KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
G AA L AG++ R L++ + G + LI++ LV+ +A+ Y G G+ D
Sbjct: 90 GVFAAAKLAGGCADAGLA-RDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLD 148
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384
L+Q GN+G+++ E+FD+TRG+KFSTY +WIR+++S+ +A AR I++P + I+++
Sbjct: 149 LVQEGNLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRV 208
Query: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFA 444
+ ++AL G+ P E+ + GLS ++ R S+ +G + +
Sbjct: 209 VRTQRALLQEAGREPAAEEVGERLGLSAEKVEEVLRLAREPISLHAPVGGEDDVFLGDLI 268
Query: 445 PDRSVKSPKE----IVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKL 500
D SP E +++RQH+ +L +L RERQV+ LRYG +D RP++LEEIG+L
Sbjct: 269 EDADAASPAESAALLLLRQHLDA----VLATLGDRERQVVQLRYGFDDGRPRTLEEIGRL 324
Query: 501 FHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
F V++E +R++E K + +LR+ L +L
Sbjct: 325 FGVTRERVRQIESKTLRRLREHTAAGQLRGYL 356
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 177/301 (58%), Gaps = 5/301 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + K L +E G+ + WAQA G+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+IR + R+ S+D ++GD + + + D +P++ ++ ++ D+ ++ L
Sbjct: 201 KQIREYLDRARLPLSLDLRVGDNQDTELGDLLEDTGT-TPEDFALQSSLRTDLDHLMAEL 259
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++R+VL LR+GL D + +L +IG ++S+E +R++E++A+TKLR + +D++ +L
Sbjct: 260 TQQQREVLALRFGLEDGQTLTLAKIGDRLNISRERVRQIEREALTKLRKRK--QDINDYL 317
Query: 533 V 533
Sbjct: 318 A 318
>gi|363420387|ref|ZP_09308479.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
gi|359735629|gb|EHK84586.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
Length = 457
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 171/312 (54%), Gaps = 27/312 (8%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATHMLQQLAAKGEKLPV 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 324
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQH 460
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 325 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 384
Query: 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 385 LQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 444
Query: 521 DSETCRDLSHFL 532
+ L +L
Sbjct: 445 HPSRSQVLRDYL 456
>gi|257063660|ref|YP_003143332.1| RNA polymerase sigma factor RpoD [Slackia heliotrinireducens DSM
20476]
gi|256791313|gb|ACV21983.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 394
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 146/241 (60%)
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 152 VGLDAKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTY 211
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + GLS
Sbjct: 212 ATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRDPSPEEIGEKMGLS 271
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
+R + + S++ IG+ +++ +F D S P + M++ + ++L++
Sbjct: 272 AERVREIQKLSQEPVSLETPIGEEEDSQLGDFIEDDSAIVPVDAASFAMMQEQLSKVLDT 331
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
L RER V++ R+GL D +P +LEE+G+ F V++E IR++E K + KLR L +
Sbjct: 332 LGERERNVVIKRFGLEDGQPHTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDY 391
Query: 532 L 532
L
Sbjct: 392 L 392
>gi|419693749|ref|ZP_14221733.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9872]
gi|380672370|gb|EIB87543.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9872]
Length = 622
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 172/287 (59%), Gaps = 1/287 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
RL E ++++ + + + E +K +L ++ + + + W A VS+ + + L
Sbjct: 143 RLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRSILHNA 202
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
+E ++ + LV+ +A+ Y G+ DL+Q G++G+++ AE+FD +G+KFSTY
Sbjct: 203 RRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYAT 262
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+W+++++++ +A H+R I++P L IS I+K + L G+ P + EIA+ +S+
Sbjct: 263 WWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVE 322
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++RS + + S+++ + + +A L + +SP+E V + ++ D+ ++ SL
Sbjct: 323 KLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLS 382
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER V+ +RYGL+D R K+LEEIG++F V++E +R++E KA+ KLR
Sbjct: 383 PRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 429
>gi|317511465|ref|ZP_07968785.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
305]
gi|315929035|gb|EFV08275.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
305]
Length = 622
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|419685146|ref|ZP_14213714.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1577]
gi|380665070|gb|EIB80649.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1577]
Length = 622
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 147/247 (59%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L++ + G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 206 LRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKG 265
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G P EIA
Sbjct: 266 YKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGHDPSPEEIA 325
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+ + + ++R + + S++ IG+ ++ +F PD P E +K+ +
Sbjct: 326 EEMSMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDASEPSEAASFTLLKEQL 385
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L +L RE +VL LR+G+ D R ++LEE+GK F+V++E IR++E KA+ KLR
Sbjct: 386 VDVLGTLTPREEKVLKLRFGIEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 445
Query: 526 RDLSHFL 532
+ L FL
Sbjct: 446 KKLKDFL 452
>gi|182416400|ref|YP_001821466.1| RpoD family RNA polymerase sigma factor [Opitutus terrae PB90-1]
gi|177843614|gb|ACB77866.1| RNA polymerase, sigma 70 subunit, RpoD family [Opitutus terrae
PB90-1]
Length = 640
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 145/244 (59%)
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
H+ + E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RGYKF
Sbjct: 330 HVREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKF 389
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WIR++I++ +A AR I+IP + ++K+ + +K L +G P E+A
Sbjct: 390 STYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEVADEM 449
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
L + ++ + + S+ +GD + + +F D+S ++P ++ +++ + +
Sbjct: 450 NLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAFSLLREKIIDV 509
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L+SL RER+VL LR+GL D ++LEE+GK F V++E IR++E KA+ K+R R L
Sbjct: 510 LDSLTERERRVLSLRFGLIDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQL 569
Query: 529 SHFL 532
F
Sbjct: 570 HGFF 573
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 162/273 (59%), Gaps = 17/273 (6%)
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+A + W ++A ++ + + G + L+K+ LV+ +A+ Y+G G+ DL+Q
Sbjct: 81 QAVAAESWLESANLTPQQWSTIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQ 140
Query: 328 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKA 387
G +G+++ AE+FD+TRG+KFSTY +WIR+ I++ +A AR I++P + ++++I+KA
Sbjct: 141 EGTLGLIRAAEKFDYTRGFKFSTYATWWIRQGITRAIAMQARTIRLPVHIVEKVNRIKKA 200
Query: 388 RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI--------DQKIGDCLNAK 439
+ L+ G+ P + EIA+ + ++R + +++ S+ D +GD + AK
Sbjct: 201 TRQLSQQLGRSPSEDEIAQAVEMDADQLRFVRKAIQLPVSLETPVGREEDTALGDLIQAK 260
Query: 440 YLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGK 499
E P+ V+R M +D+ +L++L RER VL LRYGL D R ++L+E+G+
Sbjct: 261 GNE---------PEHGVVRDLMNQDLESLLQTLTPRERDVLRLRYGLIDGRSRTLDEVGQ 311
Query: 500 LFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
F +++E IR++E +A+ KLR + + + +L
Sbjct: 312 QFGLTRERIRQIEARALRKLRHPQRLQRVREYL 344
>gi|269929031|ref|YP_003321352.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
gi|269788388|gb|ACZ40530.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
Length = 359
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 141/245 (57%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG L Q + RE+LI+ LV+ +A+ YR G+P DL+Q GN+G++ E
Sbjct: 107 AGEDSEELHQIIERAKAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVE 166
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
R+D GY+FSTY +WIR++I + VA +R I++P ++ ISK+++ L HG+
Sbjct: 167 RYDPELGYRFSTYATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRP 226
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMR 458
D E+A+ L + I A + S+D+ IG+ + + PD + + +
Sbjct: 227 ATDQELAQALDLDVERIEQARSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVT 286
Query: 459 QHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518
++ + R LESL RER VL LR+GL +P++L EI + + +S+E +R++EK+A+ K
Sbjct: 287 SAIRDQIRRSLESLSERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAK 346
Query: 519 LRDSE 523
LR+S+
Sbjct: 347 LRNSD 351
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 147/247 (59%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L++ + G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 201 LRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKG 260
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G P EIA
Sbjct: 261 YKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGHDPSPEEIA 320
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+ + + ++R + + S++ IG+ ++ +F PD P E +K+ +
Sbjct: 321 EEMSMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDASEPSEAASFTLLKEQL 380
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L +L RE +VL LR+G+ D R ++LEE+GK F+V++E IR++E KA+ KLR
Sbjct: 381 VDVLGTLTPREEKVLKLRFGIEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRS 440
Query: 526 RDLSHFL 532
+ L FL
Sbjct: 441 KKLKDFL 447
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 167/280 (59%), Gaps = 1/280 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ ++ L +K TL ++ G + W+QAAG+S L+Q + G + ++
Sbjct: 28 QEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGETAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A R I++P + +++KI+KA + L+ G+ E+A LS +IR E
Sbjct: 148 TRAIAEKGRTIRLPIHITEKLNKIKKASRELSQQLGRTATIGELAVELELSPKQIREYME 207
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVL 480
R S+D ++GD + + E D + SP++ M+ D+ +++ L +++R+V+
Sbjct: 208 RARHPLSLDLRVGDNHDTELSELLED-TGPSPEDFATHSAMRADLEKLMSELTTQQREVI 266
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
LR+GL D + +L +IG ++S+E +R++E++A+TKLR
Sbjct: 267 ALRFGLEDGQAMTLSKIGDRLNISRERVRQIEREALTKLR 306
>gi|336435045|ref|ZP_08614763.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001938|gb|EGN32065.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
1_4_56FAA]
Length = 372
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 135 AKKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGYKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIAK + + +
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPAPEEIAKELDMPVDRV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +V P E + +K+ + +L++L R
Sbjct: 255 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTER 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+G+ND R ++LEE+GK F V++E IR++E KA+ KLR R L +L
Sbjct: 315 EQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 371
>gi|325263837|ref|ZP_08130570.1| RNA polymerase sigma factor RpoD [Clostridium sp. D5]
gi|324030875|gb|EGB92157.1| RNA polymerase sigma factor RpoD [Clostridium sp. D5]
Length = 369
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 132 AKKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGYKFSTYATWW 191
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIAK + + +
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKELDMPVERV 251
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +V P E + +K+ + +L++L R
Sbjct: 252 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTER 311
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+G+ND R ++LEE+GK F V++E IR++E KA+ KLR R L +L
Sbjct: 312 EQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 368
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 174/290 (60%), Gaps = 2/290 (0%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHL 290
GR RL E ++++ + + + E +K +L ++ + + + W A VS+ + + L
Sbjct: 140 GRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAIL 199
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
+E ++ + LV+ +A+ Y G+ DL+Q G++G+++ AE+FD +G+KFST
Sbjct: 200 HNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFST 259
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +W+++++++ +A H+R I++P L IS I+K + L G+ P + EIA+ +
Sbjct: 260 YATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDM 319
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILE 470
S+ ++RS + + S+++ + + +A L + +SP+E V + ++ D+ ++
Sbjct: 320 SVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVIN 379
Query: 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
SL RER V+ +RYGL+D R K+LEEIG++F V++E +R++E KA+ KLR
Sbjct: 380 SLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 429
>gi|157737257|ref|YP_001489940.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri RM4018]
gi|384155669|ref|YP_005538484.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri ED-1]
gi|157699111|gb|ABV67271.1| RNA polymerase sigma 70 factor [Arcobacter butzleri RM4018]
gi|345469223|dbj|BAK70674.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri ED-1]
Length = 626
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 391 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 450
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ EIAK GL + +++
Sbjct: 451 ISRAIADQARTIRIPIHMIETINRINKIIRKGVQENGKEPDIEEIAKEVGLPVDKVKQVI 510
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F PD +P + +M++ ++ + +IL L+ RE+ V
Sbjct: 511 KITKEPVSLEAPIGSDEDGKFGDFVPDEKAPTPIDNIMKEDLQGQIDQILSQLNEREQAV 570
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL D ++LEEIGK +V++E +R++E A+ KL+ + ++L +++
Sbjct: 571 IRMRFGLMEDASDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGKNLKNYV 624
>gi|402312074|ref|ZP_10831004.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
gi|400370735|gb|EJP23717.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
Length = 389
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ DL+Q GN+G+L+ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 163 LVVSIAKRYMGRGMQLLDLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQAITRSIAD 222
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+++ K ++ L G+ P+ E+AK L ++++R
Sbjct: 223 QARTIRIPVHMVETINRLIKTQRKLVQELGREPKPEEVAKIMSLPVSKVREIMNFALEPV 282
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IGD ++ +F D + K P M + + +++SL RE++V++LR+GL
Sbjct: 283 SMETPIGDEDDSHLGDFLQDFNAKVPVNFAMDVLLHDQLIEVIKSLTEREQKVILLRFGL 342
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +P++LEE+GK+F +++E IR++E KA+ KLR+ + L FL
Sbjct: 343 EDGKPRTLEEVGKVFGITRERIRQIEAKALRKLRNPSKTKRLKDFL 388
>gi|383831189|ref|ZP_09986278.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463842|gb|EID55932.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 343
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 145/231 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 103 GERAKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYA 162
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ + E+A +G+
Sbjct: 163 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIPE 222
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ S + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 223 TKVASLLDHARDPVSLDMPVGTEEDAPLGDFIEDSEATDAESTVISTLLQDDLRRVLATL 282
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D RE+QV+ LRYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E
Sbjct: 283 DDREQQVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMSKLRHGE 333
>gi|313113550|ref|ZP_07799138.1| RNA polymerase sigma factor RpoD [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310624065|gb|EFQ07432.1| RNA polymerase sigma factor RpoD [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 377
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 143/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R +L ++ LV+ +A+ Y G G+PF DL+Q GN+G+++ AE+F+ RG+KFSTY +W
Sbjct: 139 ARRKLSEANLRLVVSVAKRYAGRGLPFLDLIQEGNLGLMKAAEKFEPERGFKFSTYATWW 198
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+SI++ +A R I+IP L I++++K L +G+ P EIA + +
Sbjct: 199 IRQSITRAIADQGRTIRIPVHLVESINRVKKMTGDLLRKNGREPTAEEIAVQLDMEPDRV 258
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ +G+ +A +F D P + RQ +++++F +L+SL R
Sbjct: 259 RELLQLAQDPISLETPVGEEEDAHLEDFIQDEDAGVPVDEAGRQLLRRELFSVLKSLTPR 318
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +V+ LR+GL D R +LEE+GK F+V++E +R++E KA+ KLR + L +L
Sbjct: 319 EERVIALRFGLEDGRAHTLEELGKEFNVTRERVRQIEAKALRKLRHPSRAKRLRDYL 375
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 167/285 (58%), Gaps = 31/285 (10%)
Query: 246 SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTR 305
+ G+ VV +K TL SGK WA+ A ++ L++ + G +E +IK+
Sbjct: 164 TAGISVVD----LKPTLS--SGK----RHWAELASLTVAELEEAIREGLRAKEHMIKANL 213
Query: 306 PLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVA 365
LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A
Sbjct: 214 RLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIA 273
Query: 366 RHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIV 425
+R I++P + +++KI+KA++ ++ G+ P ++A+ ++ A++R LR+
Sbjct: 274 TQSRTIRLPVHITEKLNKIKKAQRKISQDQGRTPTLDDVARELDMTAAQVREV--LLRVP 331
Query: 426 GSI----------DQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
S+ D ++GD L + SP+E++MR+ +++D+ +++ L R
Sbjct: 332 RSVSLETKVGKERDTELGDLLETDSI---------SPEELLMREALRRDLQQLMADLTDR 382
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
ER+V+ LR+GL D P SL EIG+ +S+E +R++E KA+ KLR
Sbjct: 383 EREVIRLRFGLGDGNPFSLAEIGRALDLSRERVRQIESKALQKLR 427
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 163/288 (56%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L+ + + WA+ A VS L++ L
Sbjct: 20 RFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N ++SK++K R+ L+ + P E+A L+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I R S+D +IGD N + E D + +SP ++ D+ ++L+ L
Sbjct: 200 KKIEDYLNYARRSISLDIQIGDQQNTELWELLEDPN-ESPDTYATASSLRSDLAKLLQDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V+ LRYGL D P +L ++G+ +VS+EW+R++E++A LR
Sbjct: 259 SPQQREVITLRYGLIDQNPLTLAKVGERLNVSREWVRRVEREAFKILR 306
>gi|404482228|ref|ZP_11017455.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
gi|404344389|gb|EJZ70746.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
Length = 389
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ DL+Q GN+G+L+ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 163 LVVSIAKRYMGRGMQLLDLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQAITRSIAD 222
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+++ K ++ L G+ P+ E+AK L ++++R
Sbjct: 223 QARTIRIPVHMVETINRLIKTQRKLVQELGREPKPEEVAKIMSLPVSKVREIMNFALEPV 282
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IGD ++ +F D + K P M + + +++SL RE++V++LR+GL
Sbjct: 283 SMETPIGDEDDSHLGDFLQDFNAKVPVNFAMDVLLHDQLIEVIKSLTEREQKVILLRFGL 342
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +P++LEE+GK+F +++E IR++E KA+ KLR+ + L FL
Sbjct: 343 EDGKPRTLEEVGKVFGITRERIRQIEAKALRKLRNPSKTKRLKDFL 388
>gi|312869100|ref|ZP_07729274.1| RNA polymerase sigma factor RpoD [Lactobacillus oris PB013-T2-3]
gi|311095346|gb|EFQ53616.1| RNA polymerase sigma factor RpoD [Lactobacillus oris PB013-T2-3]
Length = 380
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 143 AKQQLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + +I
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKI 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP + + MKK + +L++L R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|87307232|ref|ZP_01089377.1| transcription initiation factor sigma 70 [Blastopirellula marina
DSM 3645]
gi|87289972|gb|EAQ81861.1| transcription initiation factor sigma 70 [Blastopirellula marina
DSM 3645]
Length = 507
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F++ RGYKFSTY +WIR++I++ +A
Sbjct: 268 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEYQRGYKFSTYATWWIRQAITRAIAD 327
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + + K++ + L G+ P E+A+ GLS+ + R + R
Sbjct: 328 QSRTIRVPVHMIDTMGKVRAVTRDLLQELGRDPTAEEVAERAGLSIDDARVILKMNRNPL 387
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+DQ +GD ++ + EF D + P +Q +K + +LE+L+ RER+++ LRYGL
Sbjct: 388 SLDQPVGDHDDSFFGEFLEDHRDEDPLYETHQQALKDRLCEVLEALNHREREIIRLRYGL 447
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+GK+F V++E +R++E KA+ KL+ R L+ FL
Sbjct: 448 TDGYSYTLEEVGKIFSVTRERVRQIESKAVRKLQQPYRSRGLASFL 493
>gi|288574624|ref|ZP_06392981.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570365|gb|EFC91922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 381
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD++RGYKFSTY +W
Sbjct: 144 AKSQLIEANLRLVVSIAKKYMGRGMLFLDLIQEGNLGLIRAVEKFDYSRGYKFSTYATWW 203
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ +A + L S G+ P D EIA G+ A++
Sbjct: 204 IRQAITRAIADQARTIRIPVHMVETINKVMRASRNLVQSLGREPTDEEIAAEMGIEPAKV 263
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ +G+ +++ +F D+ + SP + + ++ + +LE L R
Sbjct: 264 VQIRKVAQEPISLESPVGEEDDSELGDFIEDKDMISPDDSTSMEFLRDQLDDVLEGLTDR 323
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD---SETCRD 527
E+QVL LR+G +D + +LE++G+ F V++E IR++E KA+ KLR S T RD
Sbjct: 324 EKQVLRLRFGFDDGQCYTLEDVGRRFGVTRERIRQIEAKALRKLRHPSRSVTLRD 378
>gi|148266058|ref|YP_001232764.1| RpoD family RNA polymerase sigma factor [Geobacter uraniireducens
Rf4]
gi|146399558|gb|ABQ28191.1| RNA polymerase, sigma 70 subunit, RpoD [Geobacter uraniireducens
Rf4]
Length = 586
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 161/280 (57%), Gaps = 8/280 (2%)
Query: 254 NLERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
N E+ +E+ESG +A L+ A ER K + EL+++ LV+ +A
Sbjct: 313 NAEKKLKKIEQESGFQATELSTALLAIEEGERKAK-------LAKSELVEANLRLVVSIA 365
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+
Sbjct: 366 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIR 425
Query: 373 IPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKI 432
IP + I+K+ + + L G+ P EIA+ L L ++R + + S++ I
Sbjct: 426 IPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMSLPLDKVRKVLKIAKEPISLETPI 485
Query: 433 GDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPK 492
G+ ++ +F D+ V SP E V++ ++ + R+L +L RE +VL +R+G+ +
Sbjct: 486 GEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTSRVLSTLTPREEKVLRMRFGIGEKSDH 545
Query: 493 SLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+LEE+G+ F V++E IR++E KA+ KLR + L F+
Sbjct: 546 TLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLKSFV 585
>gi|419640561|ref|ZP_14172490.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23357]
gi|380619291|gb|EIB38368.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23357]
Length = 622
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 163/288 (56%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L+ + + WA+ A VS L++ L
Sbjct: 20 RFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N ++SK++K R+ L+ + P E+A L+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I R S+D +IGD N + E D + +SP ++ D+ ++L+ L
Sbjct: 200 KKIEDYLNYARRSISLDIQIGDQQNTELWELLEDPN-ESPDTYATASSLRSDLAKLLQDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V+ LRYGL D P +L ++G+ +VS+EW+R++E++A LR
Sbjct: 259 SPQQREVITLRYGLIDQNPLTLAKVGERLNVSREWVRRVEREAFKILR 306
>gi|315636974|ref|ZP_07892198.1| DNA-directed RNA polymerase sigma subunit RpoD [Arcobacter butzleri
JV22]
gi|315478804|gb|EFU69513.1| DNA-directed RNA polymerase sigma subunit RpoD [Arcobacter butzleri
JV22]
Length = 626
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 391 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 450
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ EIAK GL + +++
Sbjct: 451 ISRAIADQARTIRIPIHMIETINRINKIIRKGVQENGKEPDIEEIAKEVGLPVDKVKQVI 510
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F PD +P + +M++ ++ + +IL L+ RE+ V
Sbjct: 511 KITKEPVSLEAPIGSDEDGKFGDFVPDEKAPTPIDNIMKEDLQGQIDQILSQLNEREQAV 570
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL D ++LEEIGK +V++E +R++E A+ KL+ + ++L +++
Sbjct: 571 IRMRFGLMEDASDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGKNLKNYV 624
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 180/302 (59%), Gaps = 5/302 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + LE+ K +L ++ G +L WA+A+ +SE L+ +
Sbjct: 32 RVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRA 91
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 92 GQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ + G+ E+A L+
Sbjct: 152 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISELATELDLTP 211
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + E D S SP++ M+ D+ +++ L
Sbjct: 212 KQVREYLEKARQPLSLDLRVGDNQDTELGELLED-SGPSPEDFATYSAMQVDLEKLMADL 270
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++R+VL+LR+GL D +P +L +IG +S+E +R++E++A++KLR + D+ ++
Sbjct: 271 TEQQREVLMLRFGLVDGQPMTLAKIGDQLKISRERVRQIEREALSKLRKRQA--DMREYI 328
Query: 533 VL 534
+
Sbjct: 329 AV 330
>gi|283956399|ref|ZP_06373879.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792119|gb|EFC30908.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1336]
Length = 622
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|152990473|ref|YP_001356195.1| RNA polymerase sigma factor RpoD [Nitratiruptor sp. SB155-2]
gi|151422334|dbj|BAF69838.1| RNA polymerase sigma 70 factor [Nitratiruptor sp. SB155-2]
Length = 608
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 149/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 373 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 432
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA+ G+ + ++++
Sbjct: 433 ISRAIADQARTIRIPIHMIETINRINKIVRKHLQETGKEPDVETIAEEVGMPVEKVKNVI 492
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F D++ +P E++M++ MK + ILE+L+ RE+ V
Sbjct: 493 KITKEPVSLEAPIGNEEDGKFGDFIEDKNAPNPLEVIMKEDMKSKIEEILENLNEREKAV 552
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL D ++LEEIGK +V++E +R++E A+ KL+ + R + +++
Sbjct: 553 VRMRFGLMPDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKIKNYI 606
>gi|149178485|ref|ZP_01857074.1| transcription initiation factor sigma 70 [Planctomyces maris DSM
8797]
gi|148842698|gb|EDL57072.1| transcription initiation factor sigma 70 [Planctomyces maris DSM
8797]
Length = 588
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 137/226 (60%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++G E++++ RGYKFSTY +WIR++I++ VA
Sbjct: 331 LVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKFSTYATWWIRQAITRAVAD 390
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
HAR I+IP + + IS ++ + + G+ P E+A GL + E + +
Sbjct: 391 HARTIRIPVHMFQSISTLKARSEQIRQETGREPTMEELADSVGLGVEETERIMKTWKHPI 450
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D +G+ ++ + +F D SP + MR+ +K + +L+SL RER+++ LRYGL
Sbjct: 451 SLDTPVGESEDSSFGDFLEDGHESSPADAAMREMLKDKIEHVLKSLTYREREIIRLRYGL 510
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE G++F V++E IR++E KA+ KL+ L F+
Sbjct: 511 GDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQTRSAHLRGFV 556
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 178/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+GK + + WA+AA +S + +
Sbjct: 20 RVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D +SP++ ++ D+ +++E L
Sbjct: 200 KQVRDYLERSRQPLSLDLRVGDNQDTELGDLLEDEG-QSPEDFATHSSLQFDLEKLMEDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++QV+ LR+GL D +P +L +IG ++S+E +R++E++A++KLR
Sbjct: 259 TIQQKQVIALRFGLMDGQPLTLAKIGSRLNISRERVRQIEREALSKLR 306
>gi|229491308|ref|ZP_04385134.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070925|ref|ZP_21974152.1| RNA polymerase sigma factor [Rhodococcus qingshengii BKS 20-40]
gi|229321847|gb|EEN87642.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452760008|gb|EME18351.1| RNA polymerase sigma factor [Rhodococcus qingshengii BKS 20-40]
Length = 430
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 175/320 (54%), Gaps = 33/320 (10%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA 291
AR +AE++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 117 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYAVQIMQDLA 169
Query: 292 -------------FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 170 DKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 229
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 230 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 289
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
G+ P E+AK ++ ++ + R S+DQ IGD +++ +F D
Sbjct: 290 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVA 349
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
+ V ++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E
Sbjct: 350 VDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIE 409
Query: 513 KKAMTKLRDSETCRDLSHFL 532
K M+KLR + L +L
Sbjct: 410 SKTMSKLRHPSRSQVLRDYL 429
>gi|406994761|gb|EKE13701.1| hypothetical protein ACD_12C00863G0001 [uncultured bacterium]
Length = 363
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L K+ LV+ +A+ Y G + F DL+Q GN G+++G E++D RGYKFSTY +W
Sbjct: 126 AKDKLTKANLRLVVSIAKKYLGRRLSFLDLIQEGNKGLIRGVEKYDWRRGYKFSTYATWW 185
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A +R I+IP + I++ K ++ LT G+ P E AK +++ EI
Sbjct: 186 IRQAITRAIADQSRTIRIPVHMVDHINRFYKTQRRLTQKLGREPTVKETAKEMLMTVPEI 245
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + + S+ +GD A +F D + S + V R+ +K + ++LE+L R
Sbjct: 246 ENLMKISQQPRSLSTPVGDDKEATLEQFVADTNQPSLYDKVSRELLKDALNKVLETLSPR 305
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL++R+GL D +PK+LEE+GK F V++E IR++E KA+ KL+ R L FL
Sbjct: 306 EKKVLMMRFGLEDGKPKTLEEVGKEFKVTRERIRQIEAKAIRKLKHPTRARKLKDFL 362
>gi|359145132|ref|ZP_09178962.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Streptomyces sp. S4]
Length = 357
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 155/268 (57%), Gaps = 9/268 (3%)
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
AA L AG++ R L++ + G + LI++ LV+ +A+ Y G G+ DL+Q
Sbjct: 94 AAKLAGGCADAGLA-RDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQE 152
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
GN+G+++ E+FD+TRG+KFSTY +WIR+++S+ +A AR I++P + I+++ + +
Sbjct: 153 GNLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQ 212
Query: 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRS 448
+AL G+ P E+ + GLS ++ R S+ +G + + D
Sbjct: 213 RALLQEAGREPGAEEVGERLGLSAEKVEEVLRLAREPISLHAPVGGEDDVFLGDLIEDAD 272
Query: 449 VKSPKE----IVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVS 504
SP E +++RQH+ +L +L RERQV+ LRYG +D RP++LEEIG+LF V+
Sbjct: 273 AASPAESAALLLLRQHLDA----VLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVT 328
Query: 505 KEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+E +R++E K + +LR+ L +L
Sbjct: 329 RERVRQIESKTLRRLREHTAAGQLRGYL 356
>gi|432341278|ref|ZP_19590642.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
gi|430773693|gb|ELB89357.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 175/320 (54%), Gaps = 33/320 (10%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA 291
AR +AE++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 144 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELS 196
Query: 292 -------------FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 197 DSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 256
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 257 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 316
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
G+ P E+AK ++ ++ + R S+DQ IGD +++ +F D
Sbjct: 317 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVA 376
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
+ V ++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E
Sbjct: 377 VDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIE 436
Query: 513 KKAMTKLRDSETCRDLSHFL 532
K M+KLR + L +L
Sbjct: 437 SKTMSKLRHPSRSQVLRDYL 456
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 165/287 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +K L+ + G+ ++ WA G+S L+ L G
Sbjct: 9 KKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSG 68
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
+E+LI + +V+ +A+NY G G+ F DLLQ G++G+++ E+F G +F++Y
Sbjct: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I + + H+R I++P + + K+ +A+K +P E+A+ G+++
Sbjct: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++ RI S+ Q + + Y E D ++++P V +Q M++ +L +L+
Sbjct: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER+++ LR+G+ D KSL EIG +F +SKE +R+LE +A+ KL+
Sbjct: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
>gi|295101750|emb|CBK99295.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Faecalibacterium
prausnitzii L2-6]
Length = 359
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 138/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+PF DL+Q GN+G+++ AE+F+ RG+KFSTY +WIR+SI++ +A
Sbjct: 132 LVVSVAKRYAGRGLPFLDLIQEGNLGLMKAAEKFEPDRGFKFSTYATWWIRQSITRAIAD 191
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I+IP L I++++K L G+ P EIA + A +R + +
Sbjct: 192 QGRTIRIPVHLVESINRVKKTAGELLRRTGREPTAEEIAAQLDMEPARVRELIQLAQDPI 251
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ +G+ +A +F D P + RQ +++++ +L+SL RE +V+ LR+GL
Sbjct: 252 SLETPVGEEEDAHLEDFIQDDEAGVPADEAGRQLLRRELMNVLKSLTPREERVIALRFGL 311
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+G+ F+V++E +R++E KA+ KLR + L +L
Sbjct: 312 EDGRARTLEELGREFNVTRERVRQIEAKALRKLRHPSRAKRLRDYL 357
>gi|226185420|dbj|BAH33524.1| RNA polymerase sigma factor SigA [Rhodococcus erythropolis PR4]
Length = 452
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 171/312 (54%), Gaps = 27/312 (8%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 141 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYAVQIMQDLADKGEKLPA 199
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 200 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 259
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 260 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 319
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQH 460
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 320 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 379
Query: 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 380 LQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 439
Query: 521 DSETCRDLSHFL 532
+ L +L
Sbjct: 440 HPSRSQVLRDYL 451
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 180/298 (60%), Gaps = 6/298 (2%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCR- 297
A E E+++ ++++ + E ++ L ++ + SL W QA + ++Q + + R
Sbjct: 74 AAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQ--VRQFEIWLYQLRA 131
Query: 298 --EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 132 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDKGYKFSTYAYWW 191
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + +++KI+KA+++L + P + E+A ++ A++
Sbjct: 192 IRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNPNEGELAAALDITPAQL 251
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDS 474
R + R S++ ++G + + ++ D+ ++ P++++ +++++ +L E L
Sbjct: 252 RQLLQLRRQSLSLNHRVGKGEDTELVDLLEDQQLQLPEDLMNESMLRREIVEVLAEVLTE 311
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE +V+ LRYG+ H+ +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 312 REMEVICLRYGIASHQSYTLEEVGNMFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 369
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 180/317 (56%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFS--AERALNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTLE 263
+P+ + QPT+ + L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTAKTNQTQSQPTLNADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQRMMSLLETKEALS 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ G+ WA + +SE L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KQLGREPDRLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I++ ++ L G+ EIA L A+IR R S+D ++GD + + E
Sbjct: 180 IKRTQRELAQKLGRSATPAEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D V SP + ++ +++D+ +L L ++R+V+ LR+GL D + SL +IG+ ++
Sbjct: 240 LEDSGV-SPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNI 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ LR
Sbjct: 299 SRERVRQLEHQALAHLR 315
>gi|154502790|ref|ZP_02039850.1| hypothetical protein RUMGNA_00604 [Ruminococcus gnavus ATCC 29149]
gi|336431160|ref|ZP_08611014.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
2_1_58FAA]
gi|153796673|gb|EDN79093.1| RNA polymerase sigma factor RpoD [Ruminococcus gnavus ATCC 29149]
gi|336020082|gb|EGN49799.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
2_1_58FAA]
Length = 371
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 134 AKKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGYKFSTYATWW 193
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIAK + + +
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAKELDMPVERV 253
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +V P E + +K+ + +L++L R
Sbjct: 254 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTER 313
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+G+ND R ++LEE+GK F V++E IR++E KA+ KLR R L +L
Sbjct: 314 EQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 163/288 (56%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ L+ +K L++ + + WA A +S L++ L
Sbjct: 20 RFPLLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N ++SK++K R+ L+ + P E+A L+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I R S+D +IGD N + E D + +SP V ++ D+ ++L+ L
Sbjct: 200 KKIEDYLNYARRSISLDIQIGDQQNTELWELLEDPN-ESPDTYVTASSLRSDLAKLLQDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V+ LRYGL D P +L ++G+ +VS+EW+R++E++A LR
Sbjct: 259 SPQQREVITLRYGLIDQNPLTLAKVGERLNVSREWVRRVEREAFKILR 306
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 175/293 (59%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE + G S A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + +E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +++ ++R +
Sbjct: 217 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEAEMAEALEITVHQLRQLQQL 276
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D +SP+ + M+++++ +L + L RE+ V+
Sbjct: 277 RRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVLGDVLTPREKDVI 336
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +LV
Sbjct: 337 SLRYGLTSSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLV 389
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 168/299 (56%), Gaps = 26/299 (8%)
Query: 247 KGVQVVA---NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG---W------ 294
+G ++VA NL +++ L E G SL WA AG+ LK LA G W
Sbjct: 129 EGDEIVAPFLNLVQVQERLTSELGHRPSLERWANTAGIELVDLKPTLANGKRRWAEIAQL 188
Query: 295 -------------YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
+E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD
Sbjct: 189 TVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFD 248
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ + G+ P
Sbjct: 249 PTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTL 308
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHM 461
++A ++ ++R + S++ K+G + + E V +P+E++MR+ +
Sbjct: 309 EDLAIELEMTPTQVREVLLKVPRSVSLETKVGKDKDTELGELLETDCV-TPEEMLMRESL 367
Query: 462 KKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+KD+ +L L SRER V+++R+GL+D P SL EIG+ +S+E +R++E KA+ KLR
Sbjct: 368 QKDLHSLLADLTSRERDVILMRFGLSDGHPYSLAEIGRALDLSRERVRQIESKALQKLR 426
>gi|424852234|ref|ZP_18276631.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|356666899|gb|EHI46970.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 457
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 175/320 (54%), Gaps = 33/320 (10%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA 291
AR +AE++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 144 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELS 196
Query: 292 -------------FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 197 DSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 256
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 257 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 316
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
G+ P E+AK ++ ++ + R S+DQ IGD +++ +F D
Sbjct: 317 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVA 376
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
+ V ++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E
Sbjct: 377 VDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIE 436
Query: 513 KKAMTKLRDSETCRDLSHFL 532
K M+KLR + L +L
Sbjct: 437 SKTMSKLRHPSRSQVLRDYL 456
>gi|355576273|ref|ZP_09045605.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816925|gb|EHF01437.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
Length = 461
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 159/278 (57%), Gaps = 6/278 (2%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE------RVLKQHLAFGWYCREELIK 302
V ++ E + ++ E+G AS A G E R L + G ++ LI
Sbjct: 170 VDLLTASEEVNLAMKIEAGTEASQKLEAADNGEIELTRAEMRRLMRIEQVGLEAKQALIS 229
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ L + +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 230 ANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 289
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
+A AR I+IP + I+K+ + ++ L G+ P EI + G++ +R +
Sbjct: 290 AIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPTPEEIGEEMGITADRVREIQKIS 349
Query: 423 RIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVL 482
+ S++ IG+ +++ +F D S +P E +++ + ++L+SL RER+V+
Sbjct: 350 QEPVSLETPIGEEEDSQLGDFIEDSSAVAPPEAASDSMLREQLEQVLDSLADRERKVIKF 409
Query: 483 RYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
R+GL D P++LEE+G+ F V++E IR++E K + KLR
Sbjct: 410 RFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLR 447
>gi|226366217|ref|YP_002784000.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
gi|226244707|dbj|BAH55055.1| RNA polymerase sigma factor SigA [Rhodococcus opacus B4]
gi|254553058|dbj|BAH85841.1| RNA polymerase sigma A factor [Rhodococcus opacus]
Length = 457
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 175/320 (54%), Gaps = 33/320 (10%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA 291
AR +AE++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 144 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELS 196
Query: 292 -------------FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 197 DSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 256
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 257 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 316
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
G+ P E+AK ++ ++ + R S+DQ IGD +++ +F D
Sbjct: 317 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVA 376
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
+ V ++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E
Sbjct: 377 VDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIE 436
Query: 513 KKAMTKLRDSETCRDLSHFL 532
K M+KLR + L +L
Sbjct: 437 SKTMSKLRHPSRSQVLRDYL 456
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 188/341 (55%), Gaps = 39/341 (11%)
Query: 190 KLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGV 249
+L+T S+E+++TS + E LQ ++ I + +R + G R ++ R AE
Sbjct: 95 ELRTTATSQENLDTSQV----ECLQLYIR--LIEAHDRLASQLGHRPSLERWAAEAHIA- 147
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVL 309
L +K TL A WA+ AG++ L+Q G +E +IK+ LV+
Sbjct: 148 -----LSELKPTL------VAGKRSWAEVAGLTVPDLEQIQKEGLQAKEHMIKANLRLVV 196
Query: 310 FLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHAR 369
+A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R
Sbjct: 197 SVAKKYQNRGLELLDLIQEGTMGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSR 256
Query: 370 GIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI- 428
I++P + +++KI+K ++ L+ + G P EIA ++ ++R LR+ S+
Sbjct: 257 TIRLPVHITEKLNKIKKVQRQLSQTQGHTPTIEEIAAALEMTPPQVREV--LLRVPRSVS 314
Query: 429 ---------DQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
D ++GD L A+ + SP+E++MR+ ++ ++ ++L L SRER V
Sbjct: 315 LEIKVGKEKDTELGDLLEAEDI---------SPEELLMREALQIELLKLLADLTSRERDV 365
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ +R+G+ D SL EIG+ +S+E +R++E KA+ KLR
Sbjct: 366 ISMRFGMVDGNVYSLSEIGRALDLSRERVRQIESKALQKLR 406
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 180/317 (56%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFS--AERALNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTLE 263
+P+ + QPT+ + L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTAKTNQTQPQPTLNADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQRMMSLLEAKEALS 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ G+ WA + +SE L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KQLGREPQHLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I++ ++ L G+ EIA L A+IR R S+D ++GD + + E
Sbjct: 180 IKRTQRELAQKLGRSATPAEIALELDLEPAQIREYLSMARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D V SP + ++ +++D+ +L L ++R+V+ LR+GL D + SL +IG+ ++
Sbjct: 240 LEDSGV-SPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNI 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ LR
Sbjct: 299 SRERVRQLEHQALAHLR 315
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 158/260 (60%), Gaps = 17/260 (6%)
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
AA WA+ AG+S + L+Q + G +E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 151 AAGKQRWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQE 210
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA+
Sbjct: 211 GTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQ 270
Query: 389 KALTNSHGKYP--EDIEIA-KYTGLSLAEI-----RSASECLRIVGSIDQKIGDCLNAKY 440
+ ++ G+ EDI + + T + E+ RS S +++ D ++GD L +
Sbjct: 271 RKISQEKGRTATIEDIALELEMTKEQVREVLLRVPRSVSLEIKVGKEKDTELGDLLETEE 330
Query: 441 LEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKL 500
SP+E++MR+ +++D+ ++L L SRER V+ +R+GL D P SL EIG+
Sbjct: 331 ---------TSPEEVLMREALQRDLQQLLADLTSRERDVIRMRFGLGDGHPYSLAEIGRA 381
Query: 501 FHVSKEWIRKLEKKAMTKLR 520
+S+E +R++E KA+ KLR
Sbjct: 382 LELSRERVRQIEAKALQKLR 401
>gi|91203809|emb|CAJ71462.1| strongly similar to transcription initiation factor sigma RpoD
[Candidatus Kuenenia stuttgartiensis]
Length = 551
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFSTY +WIR++I++ +A
Sbjct: 319 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRSIAD 378
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + +SKI+ K L G+ P EIA+ +S+ E R + R
Sbjct: 379 QARTIRIPVHMIETMSKIRNISKKLLQDKGREPTIEEIAREVKISVPEARRVLKISRHQI 438
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D+ +G+ ++ + +F D +SP ++ +K + +LE+L RER+++ LRYG+
Sbjct: 439 SLDRPVGESEDSSFGDFIEDEKAESPVAAATQEMLKDKIESVLETLTYREREIIKLRYGI 498
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+GK+F V++E +R++E KA+ KL+ R L FL
Sbjct: 499 GDGYTYTLEEVGKIFKVTRERVRQIEAKAVRKLQHPIRSRKLEGFL 544
>gi|392961840|ref|ZP_10327294.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans DSM 17108]
gi|421055753|ref|ZP_15518715.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B4]
gi|392439518|gb|EIW17229.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B4]
gi|392453407|gb|EIW30288.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans DSM 17108]
Length = 371
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 145 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIAD 204
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P+ EIAK +S+ +R + +
Sbjct: 205 QARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISVERVREIMKIAQEPV 264
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P E +K+ + +LE+L RE +VL LR+GL
Sbjct: 265 SLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPREEKVLRLRFGL 324
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G+ F V++E IR++E KA+ KLR + L FL
Sbjct: 325 DDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 370
>gi|296532040|ref|ZP_06894819.1| DNA-directed RNA polymerase sigma subunit RpoD [Roseomonas
cervicalis ATCC 49957]
gi|296267655|gb|EFH13501.1| DNA-directed RNA polymerase sigma subunit RpoD [Roseomonas
cervicalis ATCC 49957]
Length = 640
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 153/273 (56%), Gaps = 8/273 (2%)
Query: 262 LEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
LE+ SG AA L G ER +++ +EEL ++ LV+ +A+ YR G+
Sbjct: 375 LEQSSGLPAAELRRVCAEVGRGERDMRK-------AKEELTRANLRLVVHIAKRYRNRGL 427
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNRE 380
F DL+Q GN+G+++ ++FD RG+KF+TY +W+R++I++ +A AR I++P +
Sbjct: 428 MFGDLIQEGNIGLMRAVDKFDWRRGFKFATYATWWVRQAITRSLADQARTIRVPVHMTET 487
Query: 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
+ K+ + + G+ P E+A G+S+ ++R+ R S++ IG+ + +
Sbjct: 488 VGKVARMSRRFAQKAGREPTPEELAGELGMSVDKVRAVQRLAREPVSLENPIGEDDDGRL 547
Query: 441 LEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKL 500
+F D + P + R M+ RIL L RE ++L +R+G+ +LEE+GK
Sbjct: 548 GDFIEDENAVMPFDAASRSAMRDATMRILSDLTPREERILRMRFGIGGENDHTLEEVGKT 607
Query: 501 FHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
F+V++E IR++E KA+ KL+ S+ + L FL
Sbjct: 608 FNVTRERIRQIEAKALKKLQVSKRGKSLRSFLA 640
>gi|221632805|ref|YP_002522027.1| sigma factor MysA [Thermomicrobium roseum DSM 5159]
gi|221156346|gb|ACM05473.1| sigma factor MysA [Thermomicrobium roseum DSM 5159]
Length = 369
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 145/240 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RGYKFSTY
Sbjct: 129 GERARAHLIQANLRLVVSVAKKYVGRGLSFLDLIQEGNIGLMKATEKFDYKRGYKFSTYA 188
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ ++ +R I++P + I++I+K L + P +E+A+ +
Sbjct: 189 TWWIRQAITRAISDQSRTIRLPVHVGETINRIKKISHRLQQILEREPTQLEVARALDMPE 248
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+IR E R+ S++ IG +A +F D + +P EI +Q +++ + L L
Sbjct: 249 EKIRQILEAARLPVSLEAPIGQDGDAFLGDFIEDETQPAPLEIASQQLLRQQLEEALSRL 308
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RER++++LRYGL D + ++LEE+G+ F +++E IR++E KA+ KLR R L +L
Sbjct: 309 TERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPSCSRFLRGYL 368
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 176/296 (59%), Gaps = 2/296 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ VQ + E + L++ + S WA+A G +++ + L G +
Sbjct: 78 AEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAK 137
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 138 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 197
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A AR I++P + +++K++KA++ L + P + E+A +S +++R
Sbjct: 198 QAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELADELEVSPSQLRQ 257
Query: 418 ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRE 476
+ R S++ ++G + + ++ D+ ++ P+E++ ++ +V +L + L RE
Sbjct: 258 LLQLRRQSLSLNHRVGKGEDTELVDLLEDQDLQLPEELMNEGMLRYEVSAVLSDVLTQRE 317
Query: 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ V+ LRYGL +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 318 KDVISLRYGLCTSQPHTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 373
>gi|421074930|ref|ZP_15535949.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans JBW45]
gi|392526990|gb|EIW50097.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans JBW45]
Length = 377
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P+ EIAK +S+ +R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISVERVREIMKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P E +K+ + +LE+L RE +VL LR+GL
Sbjct: 271 SLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPREEKVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G+ F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 376
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 171/288 (59%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L ++ T E G+ S WA A +S L+ L
Sbjct: 29 RVPLLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKANLSPSQLELSLHQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 89 GQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+KA++ L+ G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSATPAEIAEALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++IR R S+D ++GD + + + D +SP++ + ++ DV ++L+ L
Sbjct: 209 SQIRDYLTIARQPISLDLRVGDNQDTELRDLLEDDG-QSPEQFTTTEALRDDVNQLLKEL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R VL+LR+GLN+ + SL ++G+ +S+E +R+LE++A+ LR
Sbjct: 268 TPQQRDVLMLRFGLNNGKELSLAKVGQQLSLSRERVRQLERQALDYLR 315
>gi|317122932|ref|YP_004102935.1| RNA polymerase sigma-70 subunit RpoD [Thermaerobacter marianensis
DSM 12885]
gi|315592912|gb|ADU52208.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter marianensis
DSM 12885]
Length = 433
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 148/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ AE+FD+ +G+KFSTY +W
Sbjct: 196 AKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFDYRKGFKFSTYATWW 255
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIAK G+ ++
Sbjct: 256 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTPEEIAKEMGIEPEKV 315
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +P E + +++ + +L +L R
Sbjct: 316 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASQLLLREQLEDVLHTLTDR 375
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL+D R ++LEE+G++F V++E IR++E KA+ KLR + L FL
Sbjct: 376 EQKVLRLRFGLDDGRQRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 432
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 171/292 (58%), Gaps = 1/292 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ VQ + ++ + L +E G+ + AQA ++ER + L G + ++I
Sbjct: 82 EIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQISKRKMI 141
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 142 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYWWIRQAIT 201
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++K ++ L + P++ E+A+ +S +R +
Sbjct: 202 RTIANDARTIRLPIHIVEKLNKLKKVQRELKQKLQRTPDETELAEALDISRTNLRQLLQL 261
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D + P++ + M++++ +L + L RE+ V+
Sbjct: 262 RRRSLSLNHRVGKGEDTELVDLLEDNDLHLPEQQMSESMMRQEISDVLSDVLTEREKDVI 321
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
LRYGL +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 322 SLRYGLATPESYTLEEVGSMFNLSRERVRQIQSKAMRKLRRPQVARRLQGWL 373
>gi|111023781|ref|YP_706753.1| RNA polymerase sigma factor [Rhodococcus jostii RHA1]
gi|397737315|ref|ZP_10503987.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
gi|110823311|gb|ABG98595.1| sigma factor, sigma 70 type, probable group 1 (principle sigma
factor) [Rhodococcus jostii RHA1]
gi|396926754|gb|EJI93991.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 171/312 (54%), Gaps = 27/312 (8%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 324
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQH 460
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 325 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 384
Query: 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 385 LQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 444
Query: 521 DSETCRDLSHFL 532
+ L +L
Sbjct: 445 HPSRSQVLRDYL 456
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 163/288 (56%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ L+ +K L+ + + +L WA A +S L++ L
Sbjct: 20 RFPLLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N ++SK++K R+ L+ + P E+A L+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTIQELAVEMDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I R S+D +IGD N + E D + +SP ++ D+ ++L+ L
Sbjct: 200 KKIEDYLNYARRSISLDIQIGDQQNTELWELLEDPN-ESPDTYATASSLRSDLAKLLQDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V+ LRYGL D P +L ++G+ +VS+EW+R++E++A LR
Sbjct: 259 SPQQREVITLRYGLIDQNPLTLAKVGERLNVSREWVRRVEREAFKILR 306
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 156/256 (60%), Gaps = 21/256 (8%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ A ++ + L+Q A G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 157 WAELAELTSKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 216
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++
Sbjct: 217 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 276
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI----------DQKIGDCLNAKYLEFA 444
G+ +IA ++ A++R LR+ S+ D ++GD L +
Sbjct: 277 RGRTATIDDIAVELEMTAAQVREV--LLRVPRSVSLEIKVGKERDTELGDLLETEE---- 330
Query: 445 PDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVS 504
SP+E++MR+ +++D+ ++L L +RER V+ +R+GL D++P SL EIG+ +S
Sbjct: 331 -----TSPEEVLMREALQRDLQQLLADLTNRERDVIRMRFGLGDNQPYSLAEIGRALDLS 385
Query: 505 KEWIRKLEKKAMTKLR 520
+E +R++E KA+ KLR
Sbjct: 386 RERVRQIEAKALQKLR 401
>gi|259503187|ref|ZP_05746089.1| RNA polymerase sigma factor [Lactobacillus antri DSM 16041]
gi|259168844|gb|EEW53339.1| RNA polymerase sigma factor [Lactobacillus antri DSM 16041]
Length = 380
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 143 AKQQLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP + + MKK + +L++L R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|57505389|ref|ZP_00371317.1| RNA polymerase sigma factor RpoD [Campylobacter upsaliensis RM3195]
gi|57016214|gb|EAL53000.1| RNA polymerase sigma factor RpoD [Campylobacter upsaliensis RM3195]
Length = 619
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 382 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 441
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ +IAK GLS+ +++
Sbjct: 442 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKNGKEPDVNDIAKEVGLSVDKVKQVI 501
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F D++ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 502 KITKEPISLEAPIGSEEDGKFGDFVEDKNSLSPMDNILKDDLKEQIDEVLDQLNDREKAV 561
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 562 IRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 615
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 174/301 (57%), Gaps = 5/301 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L K L E G+ + WA+AAG+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSETELQRTIHA 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQKLGRAATANELAAELELTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+IR E R+ S+D ++GD + + + D SP++ ++ ++ D+ ++ L
Sbjct: 201 KQIREYLERARLPLSLDLRVGDNQDTELGDLLEDTGA-SPEDFALQASLRADLEMLMADL 259
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++R+VL LR+GL D + +L +IG ++S+E +R++E++A+TKLR + +D+ +L
Sbjct: 260 TQQQREVLALRFGLEDGQTLTLSKIGDRLNISRERVRQIEREALTKLRKRK--QDMDDYL 317
Query: 533 V 533
Sbjct: 318 A 318
>gi|365839537|ref|ZP_09380773.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
gi|364564505|gb|EHM42269.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
Length = 398
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 151/254 (59%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG +E + ++ G +++L + LV+ +A+ Y G G+ F DL+Q GN+G+L+ E
Sbjct: 145 AGGAEGATAEEISTGNIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVE 204
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+++GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 205 KFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQEKGRE 264
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMR 458
P EIA G+ + +R + + S++ IG+ ++ +F D +P +
Sbjct: 265 PLPEEIAGKMGVPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDHEAIAPDDAASF 324
Query: 459 QHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518
+K+ + + L RER+VL LR+GL D RP++LEE+G+ F+V++E IR++E KA++K
Sbjct: 325 ILLKEQIEDVFSCLTDRERKVLYLRFGLKDGRPRTLEEVGQHFNVTRERIRQIEGKALSK 384
Query: 519 LRDSETCRDLSHFL 532
LR+ + FL
Sbjct: 385 LRNWGKREKIKDFL 398
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 168/288 (58%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D ++GD + + E D V SP + ++ +++D+ +L L
Sbjct: 209 AQIREYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAEL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V+ LR+GL D + SL +IG+ ++S+E +R+LE +A+ LR
Sbjct: 268 TPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLR 315
>gi|384100762|ref|ZP_10001819.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
gi|383841668|gb|EID80945.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 171/312 (54%), Gaps = 27/312 (8%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 324
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQH 460
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 325 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 384
Query: 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 385 LQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 444
Query: 521 DSETCRDLSHFL 532
+ L +L
Sbjct: 445 HPSRSQVLRDYL 456
>gi|424820434|ref|ZP_18245472.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp.
venerealis NCTC 10354]
gi|342327213|gb|EGU23697.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp.
venerealis NCTC 10354]
Length = 623
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 146/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 387 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 446
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA+ GLS+ +++
Sbjct: 447 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSIIAREVGLSIDKVKQVI 506
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + KY +F D++ SP E +++ +K+ + +L+ L+ RE+ V
Sbjct: 507 KITKEPISLEAPIGSEDDGKYGDFVEDKTNLSPMEQILKGDLKEQIDEVLDQLNDREKAV 566
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 567 IRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 620
>gi|421059039|ref|ZP_15521671.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B3]
gi|421067092|ref|ZP_15528606.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans A12]
gi|421072461|ref|ZP_15533570.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pelosinus
fermentans A11]
gi|392445661|gb|EIW22972.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pelosinus
fermentans A11]
gi|392450830|gb|EIW27839.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans A12]
gi|392459720|gb|EIW36105.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B3]
Length = 377
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P+ EIAK +S+ +R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISVERVREIMKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P E +K+ + +LE+L RE +VL LR+GL
Sbjct: 271 SLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPREEKVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G+ F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 376
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 180/317 (56%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFS--AERALNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTLE 263
+P+ + QPT+ + L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTAKTNQTQSQPTLNADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQRMMSLLEAKEALS 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ G+ WA + +SE L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KQLGREPDRLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I++ ++ L G+ EIA L A+IR R S+D ++GD + + E
Sbjct: 180 IKRTQRELAQKLGRSATPAEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D V SP + ++ +++D+ +L L ++R+V+ LR+GL D + SL +IG+ ++
Sbjct: 240 LEDSGV-SPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNI 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ LR
Sbjct: 299 SRERVRQLEHQALAHLR 315
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 180/317 (56%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFS--AERALNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTLE 263
+P+ + QPT+ + L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTAKTNQTQPQPTLNADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQRMMSLLEAKEALS 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ G+ WA + +SE L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KQLGREPDRLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I++ ++ L G+ EIA L A+IR R S+D ++GD + + E
Sbjct: 180 IKRTQRELAQKLGRSATPAEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D V SP + ++ +++D+ +L L ++R+V+ LR+GL D + SL +IG+ ++
Sbjct: 240 LEDSGV-SPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNI 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ LR
Sbjct: 299 SRERVRQLEHQALAHLR 315
>gi|417885525|ref|ZP_12529679.1| RNA polymerase sigma factor RpoD [Lactobacillus oris F0423]
gi|341595447|gb|EGS38096.1| RNA polymerase sigma factor RpoD [Lactobacillus oris F0423]
Length = 380
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 143 AKQQLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTEKV 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ IG+ ++ +F D+ SP + + MKK + +L++L R
Sbjct: 263 RNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|441513649|ref|ZP_20995477.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
gi|441451595|dbj|GAC53438.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
Length = 338
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 98 GEAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 157
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 158 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELASESGIPA 217
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + D+ +L +L
Sbjct: 218 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLHSDIRAVLATL 277
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR + L +
Sbjct: 278 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRAGDRAERLRAY 336
>gi|296120487|ref|YP_003628265.1| RNA polymerase sigma factor RpoD [Planctomyces limnophilus DSM
3776]
gi|296012827|gb|ADG66066.1| RNA polymerase sigma factor RpoD [Planctomyces limnophilus DSM
3776]
Length = 550
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFSTY +WIR++I++ +A
Sbjct: 316 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIAD 375
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + +SK++K K L G+ P E A+ G+SL E R + R
Sbjct: 376 QARTIRIPVHMIETMSKLRKVAKKLLQEMGREPTLEETAEAAGVSLEETRRVMKISRHPI 435
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D+ +G+ ++ + +F D + +SP ++ +K + +L++L RER+++ LRYGL
Sbjct: 436 SLDRPVGESEDSYFGDFIEDDNTESPVMAATQEMLKDKIDNVLKTLTYREREIIKLRYGL 495
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G++F V++E +R++E KA+ KL+ + L FL
Sbjct: 496 GDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKGFL 541
>gi|223936990|ref|ZP_03628898.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [bacterium
Ellin514]
gi|223894271|gb|EEF60724.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [bacterium
Ellin514]
Length = 614
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 147/247 (59%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L Q+ A + E+ ++ LV+ + + Y G+ F D++Q GN+G+++G E+F++ RG
Sbjct: 362 LNQYAAKAHQAKTEMAEANLRLVISIGKKYTNRGLAFLDIIQEGNMGLMKGVEKFEYRRG 421
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I K+ +A+K L G+ EIA
Sbjct: 422 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIEIIGKLMRAQKQLLQEFGREATPEEIA 481
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+S+ ++S + + S+ +GD +A + +F D+S ++P ++ +K +
Sbjct: 482 DEMQISVERVKSILKMAQQPISMQASVGDSDDATFGDFIEDKSAENPSDMTSYSLLKDKL 541
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+L +L RER+++ LR+GL D ++LEE+GK + V++E IR++E KA+ KLR
Sbjct: 542 NDVLATLTERERRIVELRFGLVDGYARTLEEVGKQYKVTRERIRQIEAKALRKLRHPTRV 601
Query: 526 RDLSHFL 532
R L FL
Sbjct: 602 RHLKGFL 608
>gi|317500513|ref|ZP_07958736.1| RNA polymerase sigma factor [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089388|ref|ZP_08338287.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438788|ref|ZP_08618411.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
1_1_57FAA]
gi|316898102|gb|EFV20150.1| RNA polymerase sigma factor [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404756|gb|EGG84294.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017785|gb|EGN47541.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
1_1_57FAA]
Length = 370
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 133 AKKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGYKFSTYATWW 192
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIAK + + +
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAKELDMPVERV 252
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +V P E + +K+ + +L++L R
Sbjct: 253 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTER 312
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+G+ND R ++LEE+GK F V++E IR++E KA+ KLR R L +L
Sbjct: 313 EQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 369
>gi|269792833|ref|YP_003317737.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100468|gb|ACZ19455.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 387
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 150 AKEKLVEANLRLVVSIAKKYIGRGMLFLDLIQEGNLGLIRAVEKFDYRKGYKFSTYATWW 209
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIA+ G+++ +
Sbjct: 210 IRQAITRAIADQARTIRIPVHMVETINKLIRISRVLVQRLGREPSAEEIAQEMGVTVDRV 269
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ IG+ +++ +F D+ + SP E Q +++ + +LE L R
Sbjct: 270 EEIQKIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPDEAAANQILREQLEEMLEDLTDR 329
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL D +LEE+G+ F V++E IR++E KA+ KLR + L FL
Sbjct: 330 EKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKRLRDFL 386
>gi|404214750|ref|YP_006668945.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645549|gb|AFR48789.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 338
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 98 GEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 157
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 158 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPA 217
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + D+ +L +L
Sbjct: 218 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLHSDIRAVLATL 277
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR + L +
Sbjct: 278 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRHGDRAERLRAY 336
>gi|167772125|ref|ZP_02444178.1| hypothetical protein ANACOL_03499 [Anaerotruncus colihominis DSM
17241]
gi|167665923|gb|EDS10053.1| RNA polymerase sigma factor RpoD [Anaerotruncus colihominis DSM
17241]
Length = 361
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 143/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY +W
Sbjct: 124 ARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYATWW 183
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K++K L + +G P EI+ + + ++
Sbjct: 184 IRQAITRAIADQARTIRIPVHMVETINKVKKVSSLLLHKNGHEPTAEEISAELDMPVDKV 243
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + S++ IG+ ++ +F PD +P +++ + +L++L R
Sbjct: 244 REIMRVAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPDTAASHTLLREQLSEVLQTLTPR 303
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL LR+GL D R ++LEE+G+ F+V++E IR++E KA+ KLR + L FL
Sbjct: 304 EEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 360
>gi|404421205|ref|ZP_11002928.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659218|gb|EJZ13874.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 481
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 148/247 (59%), Gaps = 6/247 (2%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 234 YQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 293
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 294 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 353
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
K ++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 354 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 413
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 414 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 473
Query: 526 RDLSHFL 532
+ L +L
Sbjct: 474 QVLRDYL 480
>gi|225026302|ref|ZP_03715494.1| hypothetical protein EUBHAL_00543 [Eubacterium hallii DSM 3353]
gi|224956366|gb|EEG37575.1| RNA polymerase sigma factor RpoD [Eubacterium hallii DSM 3353]
Length = 367
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 147/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G KFSTY +W
Sbjct: 130 ARKQLIEANLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVEKFDYKKGNKFSTYSTWW 189
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A A+ I++P + I+K + + L G+ P + EIAK + +A+I
Sbjct: 190 IRQAITRGIADTAKTIRVPVHMVETINKTLRTSRMLLQELGREPTNEEIAKKMNMPVAKI 249
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ R S+D IG+ +++ +F D S+ SP + +K+++ + SL R
Sbjct: 250 DEILKTSRDPVSLDTPIGEEEDSQLGDFIEDESLLSPVDSASFSMLKEELEEAMASLTER 309
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER V+ LR+GL+D + ++LEE+GK F+V++E IR++E KA+ KLR R L FL
Sbjct: 310 ERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDFL 366
>gi|343924623|ref|ZP_08764167.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|404258486|ref|ZP_10961805.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
gi|409390116|ref|ZP_11241887.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|343765423|dbj|GAA11093.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|403199943|dbj|GAB85121.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|403403000|dbj|GAC00215.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
Length = 338
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 98 GEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 157
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 158 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELANESGIPA 217
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + D+ +L +L
Sbjct: 218 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLHSDIRAVLATL 277
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR + L +
Sbjct: 278 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRAGDRAERLRAY 336
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 177/323 (54%), Gaps = 17/323 (5%)
Query: 214 QEGLKQPTIFSAERALNSRGR--------------RLTIARNEAEMSKG--VQVVANLER 257
+E L QPT + +R N + ++ + NE E+ G VQ + L
Sbjct: 3 EEPLTQPTPKTVDRQANKQVGLSADMVRTYLHEIGKIPLLSNEEEIVYGKQVQQMMLLFE 62
Query: 258 IKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRG 317
++ + S + + WA+A G+ +L ++ G + ++I++ LV+ +A+ Y+
Sbjct: 63 VQEKIAHNSDRLPTEQEWAEAVGLEPEILHSNIRIGTRAKRKMIEANLRLVVSVAKKYQK 122
Query: 318 LGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKL 377
+ DL+Q G +G+ + ++FD T+G+KFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 123 RNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHI 182
Query: 378 NREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLN 437
+++KI+KA++ L+ G+ EIA + ++R R S+D +IGD +
Sbjct: 183 TEKLNKIKKAQRQLSQDLGRVATVAEIAHELKIKTDQVRECLSLSRQPISLDLRIGDNQD 242
Query: 438 AKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEI 497
+ E D + +SP V R+ ++ D+ +L+ L ++RQV+VLRYGL D + SL I
Sbjct: 243 TELAELLED-TGRSPDNYVERESLRTDIQSLLKELPEKQRQVMVLRYGLEDGQEMSLASI 301
Query: 498 GKLFHVSKEWIRKLEKKAMTKLR 520
K +S+E +R+LE++AM LR
Sbjct: 302 SKRMDLSREQVRQLERQAMDYLR 324
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 160/274 (58%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D K+GD + + E D SP+ ++ +++D+ +L L ++R+V+ LR+GL
Sbjct: 223 SLDVKVGDNQDTELQEMLEDEG-PSPEYYTTQEFLRQDLNTLLAELTPQQREVVALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 LDGNELSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 180/317 (56%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFS--AERALNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTLE 263
+P+ + QPT+ + L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTAKTNQTQPQPTLNADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQRMMSLLEAKEALS 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ G+ WA + +SE L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KQLGREPQRLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I++ ++ L G+ EIA L A+IR R S+D ++GD + + E
Sbjct: 180 IKRTQRELAQKLGRSATPAEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D V SP + ++ +++D+ +L L ++R+V+ LR+GL D + SL +IG+ ++
Sbjct: 240 LEDSGV-SPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNI 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ LR
Sbjct: 299 SRERVRQLEHQALAHLR 315
>gi|350270188|ref|YP_004881496.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
gi|348595030|dbj|BAK98990.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
Length = 493
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 151/262 (57%), Gaps = 15/262 (5%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK+ L G +++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 231 LKKALHSGENAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKG 290
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G P +EIA
Sbjct: 291 YKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGHDPSPLEIA 350
Query: 406 -KYTGLSLA-----------EIRSASECLRIVG---SIDQKIGDCLNAKYLEFAPDRSVK 450
+ G + A I E L+I S++ IG+ ++ +F PD
Sbjct: 351 IEMNGGTAAWEKVREDEKKRAIERIREILKIAQEPVSLETPIGEEEDSHLGDFIPDEGAS 410
Query: 451 SPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRK 510
P E + +++ + +L +L RE QVL LR+G+ D R ++LEE+GK F+V++E IR+
Sbjct: 411 EPSEAASYKLLREQLMDVLSTLTPREEQVLKLRFGIEDGRARTLEEVGKEFNVTRERIRQ 470
Query: 511 LEKKAMTKLRDSETCRDLSHFL 532
+E KA+ KLR + L FL
Sbjct: 471 IEAKALRKLRHPSRSKKLKDFL 492
>gi|377567675|ref|ZP_09796883.1| RNA polymerase sigma factor SigB [Gordonia terrae NBRC 100016]
gi|377535215|dbj|GAB42048.1| RNA polymerase sigma factor SigB [Gordonia terrae NBRC 100016]
Length = 338
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 98 GEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 157
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L G+ D E+A +G+
Sbjct: 158 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPA 217
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G A +F D S + V+ + D+ +L +L
Sbjct: 218 EKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLHSDIRAVLATL 277
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+QV+ +RYGL+D +P++L++IG++F +S+E +R++E++ M KLR + L +
Sbjct: 278 DEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRHGDRAERLRAY 336
>gi|145224520|ref|YP_001135198.1| RNA polymerase sigma factor [Mycobacterium gilvum PYR-GCK]
gi|315444851|ref|YP_004077730.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
gi|145217006|gb|ABP46410.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
gi|315263154|gb|ADT99895.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 488
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 157/273 (57%), Gaps = 10/273 (3%)
Query: 270 ASLNCWAQAAGVSERVLK----QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLG 319
A L C A +E+ K Q + W CR+ L+++ LV+ LA+ Y G G
Sbjct: 215 AGLYCTQLMAEFAEKGEKLTTAQRRDYMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 274
Query: 320 IPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNR 379
+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP +
Sbjct: 275 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 334
Query: 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAK 439
I+K+ + ++ L G+ P E+AK ++ ++ + R S+DQ IGD +++
Sbjct: 335 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 394
Query: 440 YLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGK 499
+F D + V ++ + +LE+L RE V+ LR+GL D +P++L+EIG+
Sbjct: 395 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 454
Query: 500 LFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++ V++E IR++E K M+KLR + L +L
Sbjct: 455 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 487
>gi|338706454|ref|YP_004673222.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema
paraluiscuniculi Cuniculi A]
gi|335344515|gb|AEH40431.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema
paraluiscuniculi Cuniculi A]
Length = 611
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 176/306 (57%), Gaps = 7/306 (2%)
Query: 233 GRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASL-----NCWAQAAGVSERVL 286
GR L + R A++ + + + A+ ++ I T ++K + + + N ++ +
Sbjct: 305 GRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIH 364
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
+ H+ +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ +GY
Sbjct: 365 RGHVMLK-KAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGY 423
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
KFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D EIA+
Sbjct: 424 KFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQ 483
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVF 466
++ +++ R S++ IG+ ++ +F PD V++P + R +K++V
Sbjct: 484 QLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVR 543
Query: 467 RILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCR 526
IL +L +RE +VL +R+GL+ ++LEE+G F V++E IR++E KA+ +LR R
Sbjct: 544 SILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSR 603
Query: 527 DLSHFL 532
L FL
Sbjct: 604 RLKDFL 609
>gi|118469122|ref|YP_887090.1| RNA polymerase sigma factor [Mycobacterium smegmatis str. MC2 155]
gi|399987104|ref|YP_006567453.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
gi|555680|gb|AAA85642.1| sigma factor MysA [Mycobacterium smegmatis]
gi|118170409|gb|ABK71305.1| sigma factor MysA [Mycobacterium smegmatis str. MC2 155]
gi|399231665|gb|AFP39158.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
Length = 466
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 150/253 (59%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 213 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 272
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 273 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 332
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 333 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 392
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 393 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 452
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 453 RHPSRSQVLRDYL 465
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 180/317 (56%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFS--AERALNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTLE 263
+P+ + QPT+ + L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTAKTNQTQSQPTLNADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQRMMSLLEAKEALS 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ G+ WA + +SE L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KQLGREPQRLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I++ ++ L G+ EIA L A+IR R S+D ++GD + + E
Sbjct: 180 IKRTQRELAQKLGRSATPAEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D V SP + ++ +++D+ +L L ++R+V+ LR+GL D + SL +IG+ ++
Sbjct: 240 LEDSGV-SPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNI 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ LR
Sbjct: 299 SRERVRQLEHQALAHLR 315
>gi|225851205|ref|YP_002731439.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
gi|225645895|gb|ACO04081.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
Length = 577
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 145/236 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++++S LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ +GYKFSTY +W
Sbjct: 339 TKQKIVQSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFDYKKGYKFSTYATWW 398
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + +++ G+ P EIAK G+ ++
Sbjct: 399 IRQAITRAIADQARTIRIPVHMIETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEKV 458
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + S++ IGD + +F D++V SP++ V+RQ +++ + +L +L R
Sbjct: 459 RKILRTSQEPISLETPIGDDDESHLGDFIEDKTVMSPEQHVLRQALRQQLEEVLSTLSER 518
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
E QVL R+GL D +LE++GK F V++E IR++E KA+ KLR + L F
Sbjct: 519 EEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLRHPHRAKYLRPF 574
>gi|15639484|ref|NP_218934.1| RNA polymerase sigma factor RpoD [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025724|ref|YP_001933496.1| RNA polymerase sigma factor RpoD [Treponema pallidum subsp.
pallidum SS14]
gi|378972999|ref|YP_005221603.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|378974066|ref|YP_005222672.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|378975127|ref|YP_005223735.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pallidum DAL-1]
gi|378981975|ref|YP_005230280.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. CDC2]
gi|408502366|ref|YP_006869810.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pallidum str. Mexico A]
gi|6094131|sp|O83506.1|RPOD_TREPA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A;
AltName: Full=Major vegetative sigma factor
gi|3322782|gb|AAC65480.1| RNA polymerase sigma-70 factor (rpoD) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018299|gb|ACD70917.1| RNA polymerase sigma-70 factor [Treponema pallidum subsp. pallidum
SS14]
gi|374677322|gb|AEZ57615.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|374678392|gb|AEZ58684.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. CDC2]
gi|374679461|gb|AEZ59752.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|374680525|gb|AEZ60815.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pallidum DAL-1]
gi|408475729|gb|AFU66494.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pallidum str. Mexico A]
Length = 611
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 176/306 (57%), Gaps = 7/306 (2%)
Query: 233 GRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASL-----NCWAQAAGVSERVL 286
GR L + R A++ + + + A+ ++ I T ++K + + + N ++ +
Sbjct: 305 GRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIH 364
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
+ H+ +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ +GY
Sbjct: 365 RGHVMLK-KAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGY 423
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
KFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D EIA+
Sbjct: 424 KFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQ 483
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVF 466
++ +++ R S++ IG+ ++ +F PD V++P + R +K++V
Sbjct: 484 QLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVR 543
Query: 467 RILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCR 526
IL +L +RE +VL +R+GL+ ++LEE+G F V++E IR++E KA+ +LR R
Sbjct: 544 SILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSR 603
Query: 527 DLSHFL 532
L FL
Sbjct: 604 RLKDFL 609
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 160/276 (57%), Gaps = 1/276 (0%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
+ K VQ + L + L KE G+ A+ WA A ++ L L G ++++I++
Sbjct: 23 LGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGERAKQKMIEAN 82
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +
Sbjct: 83 LRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAI 142
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
A+ AR I++P + +++KI++ ++ L G+ E+AK L +IR R
Sbjct: 143 AQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEVAKALELEPEQIREYLTLARQ 202
Query: 425 VGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRY 484
S+D ++GD + + E D S+ SP++ + ++ DV L L ++RQVL LRY
Sbjct: 203 PVSLDLRVGDNQDTELGELLEDDSL-SPEQFTTVESLRDDVNLWLAELTPQQRQVLTLRY 261
Query: 485 GLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
GL D + SL ++G+ ++S+E +R+LE++A+ LR
Sbjct: 262 GLGDGQELSLAKVGEQLNLSRERVRQLERQALDHLR 297
>gi|296272949|ref|YP_003655580.1| RpoD subfamily RNA polymerase sigma-70 factor subunit [Arcobacter
nitrofigilis DSM 7299]
gi|296097123|gb|ADG93073.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Arcobacter
nitrofigilis DSM 7299]
Length = 626
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 147/238 (61%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ + KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +W
Sbjct: 387 AKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 446
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + +GK P EIAK GL + ++
Sbjct: 447 IRQAISRAIADQARTIRIPIHMIETINRINKIIRKGIQENGKEPNVDEIAKEVGLPVDKV 506
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + + S++ IG + K+ +F PD +P + +M++ ++ + +IL L+ R
Sbjct: 507 KQVIKITKEPVSLEAPIGSDEDGKFGDFVPDDKAPTPVDNIMKEDLQNQIDQILAQLNER 566
Query: 476 ERQVLVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+GL +D ++LEEIGK V++E +R++E A+ KL+ + ++L +++
Sbjct: 567 EQAVVRMRFGLMDDASDRTLEEIGKELSVTRERVRQIESSAIKKLKHPKVGKNLKNYV 624
>gi|419560742|ref|ZP_14098378.1| RNA polymerase sigma factor RpoD [Campylobacter coli 86119]
gi|380536660|gb|EIA61270.1| RNA polymerase sigma factor RpoD [Campylobacter coli 86119]
Length = 621
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 504 KITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 563
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 564 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 617
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 142/229 (62%)
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 213 VGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTY 272
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI G+S
Sbjct: 273 ATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMGMS 332
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
+R + + S++ IG+ +++ +F D + +P + +++ + ++L+
Sbjct: 333 PDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAASDSMLREQLEQVLDG 392
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
L RER+V+ R+GL D RP++LEE+G+ F V++E IR++E K + KLR
Sbjct: 393 LADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLR 441
>gi|255322395|ref|ZP_05363541.1| RNA polymerase sigma factor RpoD [Campylobacter showae RM3277]
gi|255300768|gb|EET80039.1| RNA polymerase sigma factor RpoD [Campylobacter showae RM3277]
Length = 627
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 146/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 392 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 451
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA GLS +I+
Sbjct: 452 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDINVIAAEVGLSADKIKQVI 511
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DRS SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 512 KITKEPISLEAPIGNEDDGKFGDFVEDRSSLSPMDHILKNDLKEQIDEVLDQLNEREKAV 571
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L+D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 572 IRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 625
>gi|384422005|ref|YP_005631364.1| RNA polymerase sigma factor RpoD [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291059871|gb|ADD72606.1| RNA polymerase sigma factor RpoD [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 610
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 176/306 (57%), Gaps = 7/306 (2%)
Query: 233 GRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASL-----NCWAQAAGVSERVL 286
GR L + R A++ + + + A+ ++ I T ++K + + + N ++ +
Sbjct: 304 GRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIH 363
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
+ H+ +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ +GY
Sbjct: 364 RGHVMLK-KAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGY 422
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
KFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D EIA+
Sbjct: 423 KFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQ 482
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVF 466
++ +++ R S++ IG+ ++ +F PD V++P + R +K++V
Sbjct: 483 QLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVR 542
Query: 467 RILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCR 526
IL +L +RE +VL +R+GL+ ++LEE+G F V++E IR++E KA+ +LR R
Sbjct: 543 SILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSR 602
Query: 527 DLSHFL 532
L FL
Sbjct: 603 RLKDFL 608
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 147/242 (60%)
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
A G +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFST
Sbjct: 179 AVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFST 238
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIA+ L
Sbjct: 239 YATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPTPEEIAEEMDL 298
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILE 470
+ +R + + S++ IG+ +++ +F D + P + +++ + ++L+
Sbjct: 299 TPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDAAVVPPDAASFSMLQEQLTKVLD 358
Query: 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSH 530
L RER+V+ LR+GL D P++LEE+G+ F V++E IR++E K + KLR L
Sbjct: 359 GLAERERKVISLRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKD 418
Query: 531 FL 532
+L
Sbjct: 419 YL 420
>gi|424781991|ref|ZP_18208843.1| RNA polymerase sigma factor RpoD [Campylobacter showae CSUNSWCD]
gi|421959931|gb|EKU11537.1| RNA polymerase sigma factor RpoD [Campylobacter showae CSUNSWCD]
Length = 627
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 146/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 392 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 451
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA GLS +I+
Sbjct: 452 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDINVIAAEVGLSADKIKQVI 511
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DRS SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 512 KITKEPISLEAPIGNEDDGKFGDFVEDRSSLSPMDHILKNDLKEQIDEVLDQLNEREKAV 571
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L+D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 572 IRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 625
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 174/290 (60%), Gaps = 2/290 (0%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHL 290
GR RL E ++++ + + + E +K +L ++ + + + W A VS+ + + L
Sbjct: 143 GRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAIL 202
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
+E ++ + LV+ +A+ Y G+ DL+Q G++G+++ AE+FD +G+KFST
Sbjct: 203 HNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFST 262
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +W+++++++ +A H+R I++P L IS I+K + L G+ P + EIA+ +
Sbjct: 263 YATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDM 322
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILE 470
S+ ++RS + + S+++ + + +A L + +SP+E V + ++ D+ ++
Sbjct: 323 SVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVIN 382
Query: 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
SL RER V+ +RYGL+D R K+LEEIG++F V++E +R++E KA+ KLR
Sbjct: 383 SLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 432
>gi|419588807|ref|ZP_14124624.1| RNA polymerase sigma factor RpoD [Campylobacter coli 317/04]
gi|380569296|gb|EIA91742.1| RNA polymerase sigma factor RpoD [Campylobacter coli 317/04]
Length = 621
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 504 KITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 563
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 564 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 617
>gi|419541375|ref|ZP_14080584.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z163]
gi|419616105|ref|ZP_14149757.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z156]
gi|380514629|gb|EIA40845.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z163]
gi|380596129|gb|EIB16834.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z156]
Length = 621
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 504 KITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 563
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 564 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 617
>gi|57168867|ref|ZP_00367997.1| RNA polymerase sigma factor RpoD [Campylobacter coli RM2228]
gi|305431982|ref|ZP_07401149.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter coli
JV20]
gi|419537076|ref|ZP_14076543.1| RNA polymerase sigma factor RpoD [Campylobacter coli 111-3]
gi|419539401|ref|ZP_14078733.1| RNA polymerase sigma factor RpoD [Campylobacter coli 90-3]
gi|419545010|ref|ZP_14083943.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2553]
gi|419545892|ref|ZP_14084658.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2680]
gi|419548700|ref|ZP_14087317.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2685]
gi|419550357|ref|ZP_14088865.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2688]
gi|419557112|ref|ZP_14095070.1| RNA polymerase sigma factor RpoD [Campylobacter coli 84-2]
gi|419557285|ref|ZP_14095200.1| RNA polymerase sigma factor RpoD [Campylobacter coli 80352]
gi|419563273|ref|ZP_14100733.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1091]
gi|419563852|ref|ZP_14101244.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1098]
gi|419567157|ref|ZP_14104388.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1148]
gi|419567543|ref|ZP_14104699.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1417]
gi|419574681|ref|ZP_14111384.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1909]
gi|419577684|ref|ZP_14114233.1| RNA polymerase sigma factor RpoD [Campylobacter coli 59-2]
gi|419579807|ref|ZP_14116202.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1948]
gi|419582147|ref|ZP_14118405.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1957]
gi|419583178|ref|ZP_14119365.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1961]
gi|419585571|ref|ZP_14121622.1| RNA polymerase sigma factor RpoD [Campylobacter coli 202/04]
gi|419590501|ref|ZP_14125869.1| RNA polymerase sigma factor RpoD [Campylobacter coli 37/05]
gi|419593902|ref|ZP_14129103.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9854]
gi|419595380|ref|ZP_14130484.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23336]
gi|419597802|ref|ZP_14132750.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23341]
gi|419599581|ref|ZP_14134430.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23342]
gi|419600564|ref|ZP_14135319.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23344]
gi|419602856|ref|ZP_14137424.1| RNA polymerase sigma factor RpoD [Campylobacter coli 151-9]
gi|419603907|ref|ZP_14138384.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9853]
gi|419607501|ref|ZP_14141803.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9860]
gi|419610915|ref|ZP_14144967.1| RNA polymerase sigma factor RpoD [Campylobacter coli H8]
gi|419613259|ref|ZP_14147109.1| RNA polymerase sigma factor RpoD [Campylobacter coli H9]
gi|419614874|ref|ZP_14148642.1| RNA polymerase sigma factor RpoD [Campylobacter coli H56]
gi|57019703|gb|EAL56389.1| RNA polymerase sigma factor RpoD [Campylobacter coli RM2228]
gi|304445066|gb|EFM37712.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter coli
JV20]
gi|380515141|gb|EIA41323.1| RNA polymerase sigma factor RpoD [Campylobacter coli 90-3]
gi|380516297|gb|EIA42432.1| RNA polymerase sigma factor RpoD [Campylobacter coli 111-3]
gi|380523553|gb|EIA49199.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2680]
gi|380524182|gb|EIA49804.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2553]
gi|380527143|gb|EIA52552.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2685]
gi|380530773|gb|EIA55829.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2688]
gi|380533916|gb|EIA58778.1| RNA polymerase sigma factor RpoD [Campylobacter coli 84-2]
gi|380538614|gb|EIA63064.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1091]
gi|380542748|gb|EIA66976.1| RNA polymerase sigma factor RpoD [Campylobacter coli 80352]
gi|380543362|gb|EIA67561.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1098]
gi|380544399|gb|EIA68436.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1148]
gi|380547999|gb|EIA71912.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1417]
gi|380554828|gb|EIA78277.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1909]
gi|380556098|gb|EIA79364.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1948]
gi|380556309|gb|EIA79566.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1957]
gi|380556802|gb|EIA80036.1| RNA polymerase sigma factor RpoD [Campylobacter coli 59-2]
gi|380561906|gb|EIA84807.1| RNA polymerase sigma factor RpoD [Campylobacter coli 202/04]
gi|380563829|gb|EIA86656.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1961]
gi|380568481|gb|EIA90949.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9854]
gi|380570783|gb|EIA93198.1| RNA polymerase sigma factor RpoD [Campylobacter coli 37/05]
gi|380572494|gb|EIA94740.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23341]
gi|380573744|gb|EIA95877.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23336]
gi|380573841|gb|EIA95968.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23342]
gi|380580206|gb|EIB01972.1| RNA polymerase sigma factor RpoD [Campylobacter coli 151-9]
gi|380581438|gb|EIB03163.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9853]
gi|380582879|gb|EIB04479.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23344]
gi|380584221|gb|EIB05687.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9860]
gi|380588338|gb|EIB09472.1| RNA polymerase sigma factor RpoD [Campylobacter coli H9]
gi|380589184|gb|EIB10259.1| RNA polymerase sigma factor RpoD [Campylobacter coli H8]
gi|380592180|gb|EIB13097.1| RNA polymerase sigma factor RpoD [Campylobacter coli H56]
Length = 621
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 504 KITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAV 563
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 564 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 617
>gi|315638945|ref|ZP_07894116.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter
upsaliensis JV21]
gi|315480974|gb|EFU71607.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter
upsaliensis JV21]
Length = 657
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 420 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 479
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ +IAK GLS+ +++
Sbjct: 480 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKNGKEPDVNDIAKEVGLSVDKVKQVI 539
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F D++ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 540 KITKEPISLEAPIGSEDDGKFGDFVEDKNSLSPMDNILKDDLKEQIDEVLDQLNDREKAV 599
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 600 IRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 653
>gi|313144578|ref|ZP_07806771.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi CCUG 18818]
gi|386761163|ref|YP_006234798.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi PAGU611]
gi|313129609|gb|EFR47226.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi CCUG 18818]
gi|385146179|dbj|BAM11687.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi PAGU611]
gi|396078278|dbj|BAM31654.1| RNA polymerase sigma factor [Helicobacter cinaedi ATCC BAA-847]
Length = 623
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 150/239 (62%), Gaps = 3/239 (1%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +G+KFSTY +W
Sbjct: 384 AKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYATWW 443
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE-IAKYTGLSLAE 414
IR++IS+ +A AR I+IP + I++I K + GK P DIE IAK GL + +
Sbjct: 444 IRQAISRAIADQARTIRIPIHMIETINRIHKIMRKHIQETGKEP-DIEYIAKEVGLPIDK 502
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+++ + + S+D IG + K+ +F D+S P + ++++ +K + +LE L+
Sbjct: 503 VKNVIKITKEPVSLDAPIGSDDDGKFGDFVEDKSSVGPMDYILKEDLKVQIDDVLEQLND 562
Query: 475 RERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 563 REKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 621
>gi|78044024|ref|YP_359316.1| RNA polymerase sigma factor RpoD [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996139|gb|ABB15038.1| RNA polymerase sigma factor RpoD [Carboxydothermus hydrogenoformans
Z-2901]
Length = 370
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 142/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 144 LVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 203
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK G+S ++R + +
Sbjct: 204 QARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPV 263
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D K+P E +++ + +L++L RE++VL LR+GL
Sbjct: 264 SLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGL 323
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G++F V++E IR++E KA+ KLR + L FL
Sbjct: 324 DDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
>gi|260886856|ref|ZP_05898119.1| RNA polymerase sigma factor RpoD [Selenomonas sputigena ATCC 35185]
gi|330839344|ref|YP_004413924.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Selenomonas
sputigena ATCC 35185]
gi|260863455|gb|EEX77955.1| RNA polymerase sigma factor RpoD [Selenomonas sputigena ATCC 35185]
gi|329747108|gb|AEC00465.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Selenomonas
sputigena ATCC 35185]
Length = 375
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 138 AQKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWW 197
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIA+ +S+ +
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISVERV 257
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ +P E +K+ + +L++L R
Sbjct: 258 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLDTLTER 317
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL LR+GL+D R ++LEE+G+ F V++E IR++E KA+ KLR R L FL
Sbjct: 318 EERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 374
>gi|260655747|ref|ZP_05861216.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
gi|260629363|gb|EEX47557.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
Length = 969
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+I + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RG+KFSTY +W
Sbjct: 732 AKDEIINANLRLVVSIAKKYIGRGMQFLDLIQEGNLGLIRAVEKFDYRRGFKFSTYATWW 791
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P D EIA + +
Sbjct: 792 IRQAITRAIADQARTIRIPVHMVETINKMVRISRQLVQKLGREPSDEEIAAEMKIEPERV 851
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ S++ IG+ +++ +F DRS+ SP+++ +++ + +L +L R
Sbjct: 852 EEIKRISQMPVSLETPIGEEEDSQLGDFIEDRSLPSPEDVAADNLLQEQIEEMLNALSDR 911
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL R+GL D R +LEE+G+ F V++E IR++E KA+ KLR + L FL
Sbjct: 912 EREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKLRDFL 968
>gi|153952229|ref|YP_001397920.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939675|gb|ABS44416.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
doylei 269.97]
Length = 622
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPNVSVIAKEVGLSIDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPIDHILKDDLKEQIDEVLDQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|452960731|gb|EME66046.1| RNA polymerase sigma factor [Rhodococcus ruber BKS 20-38]
Length = 451
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 149/253 (58%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 198 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 257
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 258 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 317
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 318 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 377
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 378 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 437
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 438 RHPSRSQVLRDYL 450
>gi|402832995|ref|ZP_10881618.1| RNA polymerase sigma factor RpoD [Selenomonas sp. CM52]
gi|402281738|gb|EJU30364.1| RNA polymerase sigma factor RpoD [Selenomonas sp. CM52]
Length = 375
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 138 AQKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWW 197
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIA+ +S+ +
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISVERV 257
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ +P E +K+ + +L++L R
Sbjct: 258 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLDTLTER 317
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL LR+GL+D R ++LEE+G+ F V++E IR++E KA+ KLR R L FL
Sbjct: 318 EERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 374
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 170/298 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R+L A+ E+E+ +Q + LE +K L+ + ++ WA+A G+S +VL+ L G
Sbjct: 270 RKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSG 329
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
R++LI + +V+ +A+ Y+G G+ DLLQ G++G++ E+F G +F++Y
Sbjct: 330 NRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAY 389
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+++ K + +H+R I++P + + K+++A++ P EIA+ G+++
Sbjct: 390 WWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIE 449
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
+++ R+ S+ Q + + + E D ++ P V +Q M++ V +L L
Sbjct: 450 KLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLT 509
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+ER+++ LR+G+ D P++L EIG +F SKE +R+LE++A+ KL+ + L +
Sbjct: 510 PKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESY 567
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L+ + TLE+ + + WA+AA ++ + L++ L
Sbjct: 29 RVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQLQRDLQI 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +ARN + + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GERAKRKMIEANLRLVVAIARNIKKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQLAQDLGRAATIAEIAEALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D ++GD + + ++ D S +SP V + +K+D+ ++ L
Sbjct: 209 AQIREYFRVSRHPISLDVRVGDNQDTELMDLLED-SGESPDNNVTYELLKQDLRDLIADL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++++V++LR+GLND + SL +IGK ++S+E +R+LE++A+ LR
Sbjct: 268 TPQQQEVIILRFGLNDGKELSLAKIGKRMNLSRERVRQLERQALNHLR 315
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 174/294 (59%), Gaps = 4/294 (1%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR + R+E E+++ VQ + L +K +L+ G S WA+AA V LK
Sbjct: 55 LQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELK 114
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G ++++I++ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+
Sbjct: 115 RQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYR 174
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR+ I++ +A +R I++P + ++++I+K ++ L+ + G+ P EIA+
Sbjct: 175 FSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPTISEIAEE 234
Query: 408 TGLSLAEIRS-ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVF 466
+ A +R S R V S++ ++G + + E V SP+E +++ +++DV
Sbjct: 235 LEMEPAHVRELMSRVPRSV-SLETRVGKDKDTELGELLEAEEV-SPEESAVQESLRRDVK 292
Query: 467 RILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L+ L RER V+ +RYGL D R SL EIG+ +S+E +R++E KA+ KLR
Sbjct: 293 ELLDDLTLRERDVITMRYGLLDGRTYSLSEIGRALDLSRERVRQIESKALQKLR 346
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 182/300 (60%), Gaps = 5/300 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ +K +L E + +L+ WA+ A + + L++ +
Sbjct: 24 RVPLLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKLEPQDLEEAIEK 83
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY
Sbjct: 84 GEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYA 143
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 144 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATISELAQELDLTP 203
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R+ S+D ++GD + + E D + SP++ VM+ + ++ ++ L
Sbjct: 204 KQVREYLEKARVPLSLDLRLGDNYDTELGEMLEDPNA-SPEDFVMQSSLSYELESLIADL 262
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
++RQV+ LR+GLND + +L +IG+ ++S+E +R++E++A+ KLR ++ D++ +L
Sbjct: 263 TPQQRQVITLRFGLNDGKAMTLVKIGEQLNISRERVRQIEREALNKLRKAKG--DMNEYL 320
>gi|441207686|ref|ZP_20973626.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|440627869|gb|ELQ89674.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 454
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 150/253 (59%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 201 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 260
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 261 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 320
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 321 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 380
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 381 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 440
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 441 RHPSRSQVLRDYL 453
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 163/274 (59%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L ++ L KE + W+ AG+SE + + + G ++++I++
Sbjct: 48 KKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
++R I++P + +++KI++ ++ L +G+ EIAK L ++IR R
Sbjct: 168 NSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQIRDYLLASRHPV 227
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + + D S S V +Q +++D+ ++ L ++R+VL LRYGL
Sbjct: 228 SLDLRVGDNQDTELQDLLEDESA-SADNYVTQQLLRQDLKDLMADLTPQQREVLTLRYGL 286
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
ND + SL ++G ++S+E +R+LE +A+ LR
Sbjct: 287 NDGKEMSLSKVGVHMNISRERVRQLENQALNHLR 320
>gi|407275560|ref|ZP_11104030.1| RNA polymerase sigma factor [Rhodococcus sp. P14]
Length = 452
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 149/253 (58%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 199 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 258
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 259 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 318
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 319 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 378
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 379 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 438
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 439 RHPSRSQVLRDYL 451
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 174/288 (60%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G VQ + L+ I+ +LE+ + + WAQAA +SE L + L
Sbjct: 28 RVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAATISEAELDRVLRQ 87
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD +RGYKFSTY
Sbjct: 88 GRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPSRGYKFSTYA 147
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L+ G+ EIA L
Sbjct: 148 YWWIRQAITRAIAQQGRSIRLPIHITEKLNKIKKTQRELSQQLGRSATSAEIAVALELEP 207
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
A+IR R S+D K+GD + + E D + SP++ ++Q +++++ L+ L
Sbjct: 208 AQIRDYLTLSRQPISLDAKVGDRQDTELSELLEDGGI-SPEKYTVQQSLRQELQSTLDEL 266
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++R+V+ LR+GL SL ++G++ ++S+E +R+LE +A++ R
Sbjct: 267 TRQQREVINLRFGLEGGTELSLAKVGEILNLSRERVRQLEHQALSHFR 314
>gi|295098975|emb|CBK88064.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium cylindroides
T2-87]
Length = 368
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 156/270 (57%), Gaps = 2/270 (0%)
Query: 265 ESGKAASLNCWAQAAGVSERV-LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ G+AA + ER L +A G ++ LI S LV+ +A+ Y G G+ F
Sbjct: 97 QDGEAAKKKLEEPDLDIEERKKLASVVADGEEAKQVLISSNLRLVVSIAKKYVGRGMLFL 156
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN G+++ E+FD+T+G+KFSTY +WIR+SI++ +A AR I+IP + I+K
Sbjct: 157 DLIQEGNCGLIKAVEKFDYTKGFKFSTYATWWIRQSITRAIADQARTIRIPVHMVETINK 216
Query: 384 IQKARKALTNSHGKYPEDIEIA-KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
+ + ++ L G+ P EIA K ++ ++R + S++ IG+ ++ +
Sbjct: 217 LTRIQRQLVQDLGRDPLPEEIAEKMENITADKVREIQKIALDPVSLETPIGEEDDSHLGD 276
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F D+ SP + Q +K ++ +L+ L RE +VL LR+GL D R ++LEE+GK F+
Sbjct: 277 FIEDKETLSPDDYTNNQLLKDEINNVLQGLTEREEKVLRLRFGLMDGRTRTLEEVGKEFN 336
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KL+ + L F+
Sbjct: 337 VTRERIRQIEAKALRKLKHPNRSKRLKDFV 366
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 163/285 (57%), Gaps = 6/285 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 148
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTN--SHGKYPEDIEIAKYTGLSLAEIRS 417
I++ +A AR I++P + +++KI+K ++ L+ S P E+A L+ A++R
Sbjct: 149 ITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLSTATLP---ELAAALDLTPAQVRD 205
Query: 418 ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRER 477
E R S+D ++GD + + + + KE ++ M++D+ R+L+ L ++R
Sbjct: 206 YLEKARHPLSLDLRVGDNQDTELGDLLETDMQRRRKEFTLQASMRRDIDRLLDQLTEQQR 265
Query: 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
QV+ LRYGL D + +L IG +S+E +R+LE++A+ LR +
Sbjct: 266 QVIALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTLRQA 310
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 176/293 (60%), Gaps = 2/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERVLKQHLAFGWYCREEL 300
E E++ V+ + + E + L++ + + WAQA ++ ER L+ L G + ++
Sbjct: 82 EIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGRCAKRKM 141
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 142 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 201
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + + P + E+A+ +S ++R +
Sbjct: 202 TRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQNLQRNPNEDELAQELEVSRNQLRQLLQ 261
Query: 421 CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQV 479
R S++ ++G + + ++ D ++ P+E + +++++ +L + L RE+ V
Sbjct: 262 LRRQSLSLNHRVGKGEDTELVDLLEDNDLQLPEEKMSEAMLRQEISEVLSDVLTEREKDV 321
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ LRYGL +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 322 ISLRYGLATSQPYTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 374
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 180/317 (56%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFS--AERALNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTLE 263
+P+ + QPT+ + L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTAKTNQTQPQPTLNADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQRMMSLLEAKEGLS 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ G+ WA + +SE L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KQLGREPQQLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I++ ++ L G+ EIA L A+IR R S+D ++GD + + E
Sbjct: 180 IKRTQRELAQKLGRSATPAEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D V SP + ++ +++D+ +L L ++R+V+ LR+GL D + SL +IG+ ++
Sbjct: 240 LEDSGV-SPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNI 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ LR
Sbjct: 299 SRERVRQLEHQALAHLR 315
>gi|160893000|ref|ZP_02073788.1| hypothetical protein CLOL250_00537 [Clostridium sp. L2-50]
gi|156865083|gb|EDO58514.1| RNA polymerase sigma factor RpoD [Clostridium sp. L2-50]
Length = 377
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 140 AKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 199
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P+ EIA + + +
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIADVMDIPVERV 259
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD ++ P + +K+ + +L++L R
Sbjct: 260 REILKISQEPVSLETPIGEEEDSHLGDFIPDDNMPVPADAAAFTLLKEQLVEVLDTLTER 319
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL D R ++LEE+GK F+V++E IR++E KA+ KLR R L ++
Sbjct: 320 EKKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLRDYI 376
>gi|386284675|ref|ZP_10061894.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. AR]
gi|385344078|gb|EIF50795.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. AR]
Length = 617
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 152/248 (61%), Gaps = 1/248 (0%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
++Q A + + KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +G
Sbjct: 368 IRQGKAKSEVAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYEKG 427
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++IS+ +A AR I+IP + I++I K + GK P+ IA
Sbjct: 428 YKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKHLQETGKEPDLDTIA 487
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+ GLS+ ++++ + + S++ +GD + ++ +F D++ SP ++V++ + +
Sbjct: 488 EEVGLSVDKVKNVIKITKEPVSLETPVGDEDDGRFGDFIEDKTTLSPTDVVLKDDLNNQI 547
Query: 466 FRILESLDSRERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
+L+ L+ RE+ V+ +R+G L D ++LEEIGK V++E +R++E A+ KL+ +
Sbjct: 548 DDVLDQLNEREKAVIRMRFGLLEDESDRTLEEIGKELSVTRERVRQIESSAIKKLKHPKV 607
Query: 525 CRDLSHFL 532
R+L +++
Sbjct: 608 GRNLKNYI 615
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 329 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 388
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 389 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 448
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 449 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 508
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 509 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 568
Query: 528 LSHFL 532
L +L
Sbjct: 569 LRDYL 573
>gi|323342093|ref|ZP_08082326.1| DNA-directed RNA polymerase sigma subunit RpoD [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|336066206|ref|YP_004561064.1| RNA polymerase sigma factor RpoD [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|322464518|gb|EFY09711.1| DNA-directed RNA polymerase sigma subunit RpoD [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|334296152|dbj|BAK32023.1| RNA polymerase sigma factor RpoD [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 459
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 148/241 (61%), Gaps = 1/241 (0%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 216 GLEARRILISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFDYTKGFKFSTYA 275
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEI-AKYTGLS 411
+WIR++I++ +A AR I+IP + I+K+ + +++L + G+ P EI A+ ++
Sbjct: 276 TWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGREPTAEEIAAEMENIT 335
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
++R + S++ IG+ ++ +F D+ SP E Q +K+++ +LE
Sbjct: 336 PEKVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQLLKEEIKMVLEG 395
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
L RE +VL LR+GL D R ++LEE+GK F+V++E IR++E KA+ KL+ + L F
Sbjct: 396 LTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLRDF 455
Query: 532 L 532
+
Sbjct: 456 V 456
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 160/274 (58%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D K+GD + + E D SP+ ++ +++D+ +L L ++R+V+ LR+GL
Sbjct: 223 SLDVKVGDNQDTELQEMLEDDG-PSPEYYTTQEFLRQDLNTLLAELTPQQREVVALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 LDGNELSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|404447267|ref|ZP_11012342.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
gi|403649131|gb|EJZ04562.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
Length = 459
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 214 WVCRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 273
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 274 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 333
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 334 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 393
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 394 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 453
Query: 528 LSHFL 532
L +L
Sbjct: 454 LRDYL 458
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 176/296 (59%), Gaps = 2/296 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ VQ + E + L++ + S WA+A G +++ + L G +
Sbjct: 72 AEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAK 131
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 132 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 191
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A AR I++P + +++K++KA++ L + P + E+A +S +++R
Sbjct: 192 QAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELADELEVSPSQLRQ 251
Query: 418 ASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRE 476
+ R S++ ++G + + ++ D+ ++ P+E++ ++ +V +L + L RE
Sbjct: 252 LLQLRRQSLSLNHRVGKGEDTELVDLLEDQDLQLPEELMNEGMLRYEVSAVLSDVLTQRE 311
Query: 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ V+ LRYGL +P +LEE+G +F++S+E +R+++ KAM KLR + R L +L
Sbjct: 312 KDVISLRYGLCTSQPHTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARRLKGWL 367
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 177/313 (56%), Gaps = 31/313 (9%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI---KTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
+L I +EA SKG +++A+ +I + L E G S+ WA AG+ E LK L+
Sbjct: 95 KLRILLSEA-ASKGDELLAHYLKIIEAQERLTSELGHRPSMKRWANTAGIEESELKGALS 153
Query: 292 FG---W-------------------YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
G W +E +IK+ LV+ +A+ Y+ G+ DL+Q G
Sbjct: 154 QGKRRWAETAKLTVQELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEG 213
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
+G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++
Sbjct: 214 TLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQR 273
Query: 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI--DQKIGDCLNAKYLEFAPDR 447
+ G+ P ++A ++ A++R LR+ S+ + K+G + + E
Sbjct: 274 KIAQEKGRTPTLEDLAVELEMTPAQVREV--LLRVPRSVSLETKVGKDKDTELGELLETD 331
Query: 448 SVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEW 507
V +P+E++MR+ +++D+ +L L +RER V+++R+GL D P SL EIG+ +S+E
Sbjct: 332 GV-TPEEMLMRESLQRDLQNLLADLTTRERDVILMRFGLADGHPYSLAEIGRALDLSRER 390
Query: 508 IRKLEKKAMTKLR 520
+R++E KA+ KLR
Sbjct: 391 VRQIESKALQKLR 403
>gi|32266044|ref|NP_860076.1| RNA polymerase sigma factor RpoD [Helicobacter hepaticus ATCC
51449]
gi|32262093|gb|AAP77142.1| RNA polymerase sigma 70 factor [Helicobacter hepaticus ATCC 51449]
Length = 623
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 148/238 (62%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +G+KFSTY +W
Sbjct: 384 AKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYATWW 443
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + GK P+ IAK GL + ++
Sbjct: 444 IRQAISRAIADQARTIRIPIHMIETINRIHKIMRKHVQETGKEPDIDFIAKEVGLPIDKV 503
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S+D IG + K+ +F D+S P + ++++ +K + +LE L+ R
Sbjct: 504 KNVIKITKEPVSLDAPIGSDDDGKFGDFVEDKSSVGPMDYILKEDLKVQIDEVLEQLNDR 563
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 564 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 621
>gi|383823557|ref|ZP_09978747.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
gi|383338836|gb|EID17195.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
Length = 527
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 282 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 341
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 342 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 401
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 402 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 461
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 462 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 521
Query: 528 LSHFL 532
L +L
Sbjct: 522 LRDYL 526
>gi|313893234|ref|ZP_07826811.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 158
str. F0412]
gi|313442587|gb|EFR61002.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 158
str. F0412]
Length = 386
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 144/229 (62%), Gaps = 6/229 (2%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+GYKFSTY +WIR++I++ +A
Sbjct: 161 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIAD 220
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIA+ G+++ +R + +
Sbjct: 221 QARTIRIPVHMVETINKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQEPV 280
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEI---VMRQHMKKDVFRILESLDSRERQVLVLR 483
S++ IG+ ++ +F D+ +P + ++ Q +DVF L RE+QVL+LR
Sbjct: 281 SLETPIGEEEDSHLGDFIEDQDAIAPDDAASYILLQEQIEDVFT---CLTDREQQVLILR 337
Query: 484 YGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+GL D +P++LEE+G+ F+V++E IR++E KA+TKLR+ + FL
Sbjct: 338 FGLKDGKPRTLEEVGQHFNVTRERIRQIEGKALTKLRNRGKRDKIKDFL 386
>gi|172056869|ref|YP_001813329.1| RpoD family RNA polymerase sigma factor [Exiguobacterium sibiricum
255-15]
gi|407476679|ref|YP_006790556.1| RNA polymerase sigma factor rpoD [Exiguobacterium antarcticum B7]
gi|171989390|gb|ACB60312.1| RNA polymerase, sigma 70 subunit, RpoD family [Exiguobacterium
sibiricum 255-15]
gi|407060758|gb|AFS69948.1| RNA polymerase sigma factor rpoD [Exiguobacterium antarcticum B7]
Length = 361
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 143/226 (63%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A
Sbjct: 135 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIAD 194
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI+K ++ ++R + +
Sbjct: 195 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEISKEMEITPEKVREILKIAQEPV 254
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P++ + +K+ + +L++L RE VL LR+GL
Sbjct: 255 SLETPIGEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLEDVLDTLTDREENVLRLRFGL 314
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 315 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 360
>gi|153816193|ref|ZP_01968861.1| hypothetical protein RUMTOR_02441 [Ruminococcus torques ATCC 27756]
gi|145846528|gb|EDK23446.1| RNA polymerase sigma factor RpoD [Ruminococcus torques ATCC 27756]
Length = 383
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 146 AKKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGYKFSTYATWW 205
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIAK + + +
Sbjct: 206 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAKELDMPVERV 265
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +V P E + +K+ + +L++L R
Sbjct: 266 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTER 325
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+G+ND R ++LEE+GK F V++E IR++E KA+ KLR R L +L
Sbjct: 326 EQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 382
>gi|41408918|ref|NP_961754.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397277|gb|AAS05137.1| SigA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 509
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 264 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 323
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 324 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDPGREPTPEELAKE 383
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 384 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 443
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 444 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 503
Query: 528 LSHFL 532
L +L
Sbjct: 504 LRDYL 508
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 155/248 (62%), Gaps = 5/248 (2%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ A ++ L Q + G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 152 WAETAKLTVEELDQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLE 211
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ +
Sbjct: 212 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQE 271
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI--DQKIGDCLNAKYLEFAPDRSVKSP 452
G+ P ++A ++ A++R LR+ S+ + K+G + + E V +P
Sbjct: 272 KGRTPTLEDLAIELEMTPAQVREV--LLRVPRSVSLETKVGKDKDTELGELLETDCV-TP 328
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
+E++MR+ +++D+ +L+ L SRER V+++R+GL+D P SL EIG+ +S+E +R++E
Sbjct: 329 EEMLMRESLQRDLHNLLDDLTSRERDVILMRFGLSDGHPYSLAEIGRALDLSRERVRQIE 388
Query: 513 KKAMTKLR 520
KA+ KLR
Sbjct: 389 SKALQKLR 396
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 331 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 390
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 391 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 450
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 451 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 510
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 511 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 570
Query: 528 LSHFL 532
L +L
Sbjct: 571 LRDYL 575
>gi|357021629|ref|ZP_09083860.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
gi|356479377|gb|EHI12514.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
Length = 504
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 259 WICRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 318
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 319 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 378
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 379 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 438
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 439 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 498
Query: 528 LSHFL 532
L +L
Sbjct: 499 LRDYL 503
>gi|397679869|ref|YP_006521404.1| RNA polymerase sigma factor rpoD [Mycobacterium massiliense str. GO
06]
gi|395458134|gb|AFN63797.1| RNA polymerase sigma factor rpoD [Mycobacterium massiliense str. GO
06]
Length = 380
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 135 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 194
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 195 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 254
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 255 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 314
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 315 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 374
Query: 528 LSHFL 532
L +L
Sbjct: 375 LRDYL 379
>gi|339635193|ref|YP_004726834.1| RNA polymerase sigma factor [Weissella koreensis KACC 15510]
gi|420161189|ref|ZP_14667960.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella koreensis
KCTC 3621]
gi|338854989|gb|AEJ24155.1| RNA polymerase sigma factor [Weissella koreensis KACC 15510]
gi|394745939|gb|EJF34757.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella koreensis
KCTC 3621]
Length = 377
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 179/310 (57%), Gaps = 11/310 (3%)
Query: 225 AERALNSRGRRLTIA--RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
A RALN++ L+ + AE G+++ + ++ L KE G+ SL + ++
Sbjct: 76 AMRALNNKKTALSEKELKQAAEAPSGIKIN---DPVRMYL-KEIGRV-SLLTGPEEVALA 130
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
ER+ + + ++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 131 ERIEEGDAS----AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDY 186
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + +++L + G+ P
Sbjct: 187 RKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRSLLSDLGREPTPE 246
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
EI ++ ++R + + S++ IG+ ++ +F D SP + Q +K
Sbjct: 247 EIGAEMDIATEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQMLK 306
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+ + +L++L RE VL LR+GL D R ++LEE+GK+F V++E IR++E KA+ KLR
Sbjct: 307 EQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHP 366
Query: 523 ETCRDLSHFL 532
+ L FL
Sbjct: 367 TRSKQLRDFL 376
>gi|365870934|ref|ZP_09410475.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|414583598|ref|ZP_11440738.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|420880896|ref|ZP_15344263.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420885019|ref|ZP_15348379.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420890160|ref|ZP_15353508.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420895746|ref|ZP_15359085.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899547|ref|ZP_15362879.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420906223|ref|ZP_15369541.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420972712|ref|ZP_15435905.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|421050011|ref|ZP_15513005.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|363994737|gb|EHM15955.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|392080782|gb|EIU06608.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392085805|gb|EIU11630.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087908|gb|EIU13730.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392095058|gb|EIU20853.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392100894|gb|EIU26685.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392104127|gb|EIU29913.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392118750|gb|EIU44518.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392165604|gb|EIU91290.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392238614|gb|EIV64107.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
Length = 467
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 222 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 281
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 282 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 341
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 342 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 401
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 402 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 461
Query: 528 LSHFL 532
L +L
Sbjct: 462 LRDYL 466
>gi|169630092|ref|YP_001703741.1| RNA polymerase sigma factor [Mycobacterium abscessus ATCC 19977]
gi|418247851|ref|ZP_12874237.1| RNA polymerase sigma factor [Mycobacterium abscessus 47J26]
gi|418421111|ref|ZP_12994287.1| RNA polymerase sigma factor [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709752|ref|ZP_14237220.1| RNA polymerase sigma factor [Mycobacterium abscessus M93]
gi|419716769|ref|ZP_14244164.1| RNA polymerase sigma factor [Mycobacterium abscessus M94]
gi|420864405|ref|ZP_15327795.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869196|ref|ZP_15332578.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873640|ref|ZP_15337017.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420910618|ref|ZP_15373930.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917070|ref|ZP_15380374.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922235|ref|ZP_15385532.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927897|ref|ZP_15391179.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932113|ref|ZP_15395388.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420937966|ref|ZP_15401235.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942371|ref|ZP_15405628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420947419|ref|ZP_15410669.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952630|ref|ZP_15415874.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956799|ref|ZP_15420036.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961817|ref|ZP_15425042.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967506|ref|ZP_15430710.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420978237|ref|ZP_15441415.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983622|ref|ZP_15446789.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420988844|ref|ZP_15452000.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|420992758|ref|ZP_15455905.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998610|ref|ZP_15461747.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003047|ref|ZP_15466171.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421008103|ref|ZP_15471214.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013590|ref|ZP_15476671.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018540|ref|ZP_15481598.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024704|ref|ZP_15487748.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029833|ref|ZP_15492865.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035203|ref|ZP_15498223.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421039567|ref|ZP_15502576.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421043995|ref|ZP_15506996.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|169242059|emb|CAM63087.1| Probable RNA polymerase sigma factor RpoD (Sigma-A) [Mycobacterium
abscessus]
gi|353452344|gb|EHC00738.1| RNA polymerase sigma factor [Mycobacterium abscessus 47J26]
gi|363997578|gb|EHM18789.1| RNA polymerase sigma factor [Mycobacterium abscessus subsp.
bolletii BD]
gi|382940330|gb|EIC64654.1| RNA polymerase sigma factor [Mycobacterium abscessus M94]
gi|382943633|gb|EIC67947.1| RNA polymerase sigma factor [Mycobacterium abscessus M93]
gi|392068666|gb|EIT94513.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071380|gb|EIT97226.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072668|gb|EIT98509.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392112612|gb|EIU38381.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392121210|gb|EIU46976.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132071|gb|EIU57817.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135130|gb|EIU60871.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136872|gb|EIU62609.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143481|gb|EIU69206.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149798|gb|EIU75512.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392154449|gb|EIU80155.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157942|gb|EIU83639.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392166511|gb|EIU92196.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168618|gb|EIU94296.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392183123|gb|EIV08774.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392185542|gb|EIV11191.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186422|gb|EIV12069.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194505|gb|EIV20125.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199556|gb|EIV25166.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201938|gb|EIV27536.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208415|gb|EIV33989.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211501|gb|EIV37067.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224585|gb|EIV50105.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392224659|gb|EIV50178.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392225935|gb|EIV51450.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392237847|gb|EIV63341.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|392249282|gb|EIV74757.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250013|gb|EIV75487.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253698|gb|EIV79166.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
Length = 467
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 222 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 281
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 282 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 341
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 342 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 401
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 402 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 461
Query: 528 LSHFL 532
L +L
Sbjct: 462 LRDYL 466
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 170/298 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R+L A+ E+E+ +Q + LE +K L+ + ++ WA+A G+S +VL+ L G
Sbjct: 259 RKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSG 318
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
R++LI + +V+ +A+ Y+G G+ DLLQ G++G++ E+F G +F++Y
Sbjct: 319 NRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAY 378
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+++ K + +H+R I++P + + K+++A++ P EIA+ G+++
Sbjct: 379 WWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIE 438
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
+++ R+ S+ Q + + + E D ++ P V +Q M++ V +L L
Sbjct: 439 KLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLT 498
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+ER+++ LR+G+ D P++L EIG +F SKE +R+LE++A+ KL+ + L +
Sbjct: 499 PKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESY 556
>gi|163815580|ref|ZP_02206953.1| hypothetical protein COPEUT_01755 [Coprococcus eutactus ATCC 27759]
gi|158449217|gb|EDP26212.1| RNA polymerase sigma factor RpoD [Coprococcus eutactus ATCC 27759]
Length = 399
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L +S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +W
Sbjct: 161 AKKKLAESNLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWW 220
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P E+ + GL +
Sbjct: 221 IRQAITRAIADQARTIRIPVHMVETINKVTRVSRDLLQKLGREPLPEEVGEVMGLPKERV 280
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + + S++ IG+ ++ +F D S+ +P E + + + + ++ +L R
Sbjct: 281 QEIMKIAQEPVSLETPIGEEEDSHLGDFIQDESIPTPVEATNQTLLHEQLDDVVSTLTER 340
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++V+ LR+G +D RP++LEE+GK F+V++E IR++E KA+ KLR R L FL
Sbjct: 341 EQRVIKLRFGWDDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPNRSRKLKDFL 397
>gi|121534199|ref|ZP_01666024.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosinus
carboxydivorans Nor1]
gi|121307302|gb|EAX48219.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosinus
carboxydivorans Nor1]
Length = 368
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIA+ +S+ +R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIAREMDISVERVREIMKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P E +K+ + +LE+L RE +VL LR+GL
Sbjct: 262 SLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPREEKVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G+ F V++E IR++E KA+ KLR + L FL
Sbjct: 322 DDGRARTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 367
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 158/274 (57%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA E +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPETEVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++GD + + E D SP+ ++ +++D+ +L L ++R+V+ LR+GL
Sbjct: 223 SLDVRVGDNQDTELQEMLEDDG-PSPEYYTTQEFLRQDLNTLLAELTPQQREVVALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 EDGNEMSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|357389445|ref|YP_004904284.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311895920|dbj|BAJ28328.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 389
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 170/333 (51%), Gaps = 25/333 (7%)
Query: 209 PSEALQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQV----VANLERIKTTLE 263
P AL EG P + L GR RL A E E+++ ++ L+R+ E
Sbjct: 72 PEPALDEG-TGPAADLLRQYLREIGRVRLLTAVEEVELARAIEAGLFAEEALDRVPPAAE 130
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ L L + + G + LI++ LV+ +A+ Y G G+
Sbjct: 131 RRPADERLLGD-----------LDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTLL 179
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GNVG+++ E+FD+ RGYKFSTY +WIR+++S+ +A AR I++P + I++
Sbjct: 180 DLIQEGNVGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINR 239
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
+ + ++ L G P E+ L +R + + S+ +G+ + +
Sbjct: 240 VLRVQRGLLQERGVEPTAAEVGAVLQLPPERVREVLKLAQEPVSLHTPVGEEDDVALGDL 299
Query: 444 APDRSVKSPKE----IVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGK 499
D SP E +++R+H++ +L +L RERQV+ LRYGL+D RP++LEEIG
Sbjct: 300 IEDADAASPPESAAFLLLREHLEA----VLATLGERERQVVQLRYGLDDGRPRTLEEIGH 355
Query: 500 LFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
LF V++E IR++E K + KLRD L +L
Sbjct: 356 LFGVTRERIRQIEAKTLGKLRDHAFADQLRGYL 388
>gi|197301814|ref|ZP_03166884.1| hypothetical protein RUMLAC_00540 [Ruminococcus lactaris ATCC
29176]
gi|197299254|gb|EDY33784.1| RNA polymerase sigma factor RpoD [Ruminococcus lactaris ATCC 29176]
Length = 372
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 135 AKKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGYKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIAK + + +
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAKEMDMPVERV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +V P E + +K+ + +L++L R
Sbjct: 255 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTER 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+G+ND R ++LEE+G+ F V++E IR++E KA+ KLR R L +L
Sbjct: 315 EQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 371
>gi|189424079|ref|YP_001951256.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter lovleyi
SZ]
gi|189420338|gb|ACD94736.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacter lovleyi
SZ]
Length = 586
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 162/280 (57%), Gaps = 8/280 (2%)
Query: 254 NLERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
N R T +E+ESG KA L+ +A E H A + ELI++ LV+ +A
Sbjct: 313 NAARKLTKVEQESGFKATELSKAIRAIREGE-----HKA--RIAKSELIEANLRLVVSIA 365
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+
Sbjct: 366 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIR 425
Query: 373 IPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKI 432
IP + I+K+ + + L +G+ P EIA L L ++R + + S++ I
Sbjct: 426 IPVHMIETINKLIRTSRQLVQENGREPSPEEIADRMQLPLDKVRKVLKIAKEPISLETPI 485
Query: 433 GDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPK 492
G+ ++ +F D+ V +P E V++ ++ + R+L +L RE +VL +R+G+ +
Sbjct: 486 GEEEDSHLGDFIEDKGVVNPLEAVIKANLSEQTSRVLSTLTPREEKVLRMRFGIGEKSDH 545
Query: 493 SLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+LEE+G+ F V++E IR++E KA+ KLR + L F+
Sbjct: 546 TLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKKLKSFV 585
>gi|375142599|ref|YP_005003248.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823220|gb|AEV76033.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 528
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 148/251 (58%), Gaps = 6/251 (2%)
Query: 288 QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 277 QRRDMSWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 396
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHM 461
E+AK ++ ++ + R S+DQ IGD +++ +F D + V +
Sbjct: 397 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLL 456
Query: 462 KKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521
+ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 457 QDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 516
Query: 522 SETCRDLSHFL 532
+ L +L
Sbjct: 517 PSRSQVLRDYL 527
>gi|313682108|ref|YP_004059846.1| RNA polymerase sigma-70 subunit RpoD [Sulfuricurvum kujiense DSM
16994]
gi|313154968|gb|ADR33646.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfuricurvum kujiense DSM
16994]
Length = 620
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + HGK P+ IA+ GLS+ ++++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVETIAEEVGLSVEKVKNVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + ++ +F D+ SP + +++ +K + +LE L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEEDGRFGDFIEDKMSLSPSDAILKDDLKVQIESVLEQLNEREKAV 564
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G ++D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IKMRFGIMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|222824021|ref|YP_002575595.1| RNA polymerase sigma factor RpoD [Campylobacter lari RM2100]
gi|222539243|gb|ACM64344.1| RNA polymerase sigma 70 factor [Campylobacter lari RM2100]
Length = 625
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 388 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 447
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 448 ISRAIADQARTIRIPIHMIETINQINKIIREYLQKEGKEPDVSIIAKEVGLSVDKVKQVI 507
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ I + + K+ +F DR+ SP + +++ +K+ + +L+ L+ RE+ V
Sbjct: 508 KITKEPISLEAPISNEDDGKFGDFVEDRTSISPMDHILKDDLKEQIDEVLDQLNDREKAV 567
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 568 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 621
>gi|418051032|ref|ZP_12689117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353184689|gb|EHB50213.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 509
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 150/253 (59%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 256 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 315
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 316 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 375
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 376 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 435
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 436 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 495
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 496 RHPSRSQVLRDYL 508
>gi|253702377|ref|YP_003023566.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter sp. M21]
gi|251777227|gb|ACT19808.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter sp.
M21]
Length = 584
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 159/271 (58%), Gaps = 6/271 (2%)
Query: 262 LEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIP 321
+E+ESG AS A A + E K LA + EL+++ LV+ +A+ Y G+
Sbjct: 319 IEQESGFKASELANALLA-IEEGEHKAKLA-----KSELVEANLRLVVSIAKKYTNRGLQ 372
Query: 322 FSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREI 381
F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP + I
Sbjct: 373 FLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETI 432
Query: 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYL 441
+K+ + + L G+ P EIA+ L L ++R + + S++ IG+ ++
Sbjct: 433 NKLIRTSRQLVQEIGREPSPEEIAERMALPLDKVRKVLKIAKEPISLETPIGEEEDSHLG 492
Query: 442 EFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLF 501
+F D+ V SP E V++ ++ + R+L +L RE +VL +R+G+ + +LEE+G+ F
Sbjct: 493 DFIEDKGVVSPLEAVIKANLSEQTSRVLSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDF 552
Query: 502 HVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KLR + L F+
Sbjct: 553 EVTRERIRQIEAKALRKLRHPSRAKKLKSFV 583
>gi|389575813|ref|ZP_10165841.1| RNA polymerase sigma factor, sigma-70 family [Eubacterium
cellulosolvens 6]
gi|389311298|gb|EIM56231.1| RNA polymerase sigma factor, sigma-70 family [Eubacterium
cellulosolvens 6]
Length = 373
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 147 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 206
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L +G+ P EIAK +S+ +R + +
Sbjct: 207 QARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPEEIAKNMNMSVERVREILKISQEPV 266
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D +V P + +K+ + +L +L RE++VL LR+GL
Sbjct: 267 SLETPIGEEEDSHLGDFIQDENVPVPADAAAFTMLKEQLEEVLGTLAEREQKVLRLRFGL 326
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F+V++E IR++E KA+ KLR R L +L
Sbjct: 327 DDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 372
>gi|400536812|ref|ZP_10800346.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
gi|400329825|gb|EJO87324.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
Length = 505
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 260 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 319
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 320 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 379
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 380 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 439
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 440 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 499
Query: 528 LSHFL 532
L +L
Sbjct: 500 LRDYL 504
>gi|336283393|gb|AEI29170.1| sigma70 transcriptional factor [Rhodococcus ruber]
Length = 447
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 145/241 (60%), Gaps = 6/241 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 194 VAQRRDLNWTCRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 253
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 254 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 313
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 314 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 373
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 374 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 433
Query: 520 R 520
R
Sbjct: 434 R 434
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 149/253 (58%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 221 VAQRRDMTWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 280
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 281 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 340
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 341 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 400
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 401 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 460
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 461 RHPSRSQVLRDYL 473
>gi|291550178|emb|CBL26440.1| RNA polymerase, sigma 70 subunit, RpoD [Ruminococcus torques L2-14]
Length = 373
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 136 AKKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGYKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIAK + + +
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAKEMDMPVERV 255
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +V P E + +K+ + +L++L R
Sbjct: 256 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTER 315
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+G+ND R ++LEE+G+ F V++E IR++E KA+ KLR R L +L
Sbjct: 316 EQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 372
>gi|256004390|ref|ZP_05429371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 2360]
gi|385778673|ref|YP_005687838.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
thermocellum DSM 1313]
gi|419722973|ref|ZP_14250109.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum AD2]
gi|419724679|ref|ZP_14251738.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum YS]
gi|255991674|gb|EEU01775.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 2360]
gi|316940353|gb|ADU74387.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 1313]
gi|380771898|gb|EIC05759.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum YS]
gi|380781030|gb|EIC10692.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum AD2]
Length = 358
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 132 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIAD 191
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 192 QARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPV 251
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L++L RE +VL LR+GL
Sbjct: 252 SLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGL 311
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F+V++E IR++E KA+ KLR + L +L
Sbjct: 312 DDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
>gi|238018971|ref|ZP_04599397.1| hypothetical protein VEIDISOL_00831 [Veillonella dispar ATCC 17748]
gi|237864455|gb|EEP65745.1| hypothetical protein VEIDISOL_00831 [Veillonella dispar ATCC 17748]
Length = 387
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 144/229 (62%), Gaps = 6/229 (2%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+GYKFSTY +WIR++I++ +A
Sbjct: 162 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIAD 221
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIA+ G+++ +R + +
Sbjct: 222 QARTIRIPVHMVETINKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQEPV 281
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKE---IVMRQHMKKDVFRILESLDSRERQVLVLR 483
S++ IG+ ++ +F D+ +P + ++ Q +DVF L RE+QVL+LR
Sbjct: 282 SLETPIGEEEDSHLGDFIEDQDAIAPDDAASYILLQEQIEDVFT---CLTDREQQVLILR 338
Query: 484 YGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+GL D +P++LEE+G+ F+V++E IR++E KA+TKLR+ + FL
Sbjct: 339 FGLKDGKPRTLEEVGQHFNVTRERIRQIEGKALTKLRNRGKRDKIKDFL 387
>gi|291451171|ref|ZP_06590561.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|291354120|gb|EFE81022.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length = 397
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 158/271 (58%), Gaps = 15/271 (5%)
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
AA L AG++ R L++ + G + LI++ LV+ +A+ Y G G+ DL+Q
Sbjct: 134 AAKLAGGCADAGLA-RDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQE 192
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
GN+G+++ E+FD+TRG+KFSTY +WIR+++S+ +A AR I++P + I+++ + +
Sbjct: 193 GNLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQ 252
Query: 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG---SIDQKIGDCLNAKYLEFAP 445
+AL G+ P E+ + GLS ++ E LR+ S+ +G + +
Sbjct: 253 RALLQEAGREPAAEEVGERLGLSAEKV---EEVLRLAHEPISLHAPVGGEDDVFLGDLIE 309
Query: 446 DRSVKSPKE----IVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLF 501
D SP E +++RQH+ +L +L RERQV+ LRYG +D RP++LEEIG+LF
Sbjct: 310 DADAASPAESAALLLLRQHLDA----VLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLF 365
Query: 502 HVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E +R++E K + +LR+ L +L
Sbjct: 366 GVTRERVRQIESKTLRRLREHTAAGQLRGYL 396
>gi|125973412|ref|YP_001037322.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum ATCC
27405]
gi|125713637|gb|ABN52129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum ATCC 27405]
Length = 358
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 132 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIAD 191
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 192 QARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPV 251
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L++L RE +VL LR+GL
Sbjct: 252 SLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGL 311
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F+V++E IR++E KA+ KLR + L +L
Sbjct: 312 DDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
>gi|256847131|ref|ZP_05552577.1| RNA polymerase sigma factor RpoS [Lactobacillus coleohominis
101-4-CHN]
gi|256715795|gb|EEU30770.1| RNA polymerase sigma factor RpoS [Lactobacillus coleohominis
101-4-CHN]
Length = 381
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 143/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 144 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 203
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 204 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPTKKV 263
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D SP + + MKK + +L++L R
Sbjct: 264 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDR 323
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 324 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 380
>gi|451338960|ref|ZP_21909486.1| RNA polymerase sigma factor SigB [Amycolatopsis azurea DSM 43854]
gi|449418339|gb|EMD23930.1| RNA polymerase sigma factor SigB [Amycolatopsis azurea DSM 43854]
Length = 317
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 143/231 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+++G+KFSTY
Sbjct: 77 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 136
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ E+A +G+
Sbjct: 137 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 196
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 197 HKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 256
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D RE QV+ LRYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E
Sbjct: 257 DDRESQVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGE 307
>gi|435854555|ref|YP_007315874.1| RNA polymerase sigma factor, sigma-70 family [Halobacteroides
halobius DSM 5150]
gi|433670966|gb|AGB41781.1| RNA polymerase sigma factor, sigma-70 family [Halobacteroides
halobius DSM 5150]
Length = 374
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 145/238 (60%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y +++L + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 136 YAKQKLAAANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 195
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I++P + I+K+ + + L G+ P D EIA+ L+ +
Sbjct: 196 WIRQAITRSIADQARTIRVPVHMVETINKLIRVTRHLVQELGREPTDEEIAEEMDLNPEK 255
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
++ + + S++ IG+ ++ +F D P R +K+ + +++SL
Sbjct: 256 VQEIKKIAQEPVSLETPIGEEEDSYLGDFVEDEKSPEPAAAASRMLLKEQLDGVMDSLTD 315
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE++VL LR+G+ D R ++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 316 REKRVLELRFGIGDGRSRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 373
>gi|404495252|ref|YP_006719358.1| RNA polymerase sigma-70 factor RpoD [Geobacter metallireducens
GS-15]
gi|418065719|ref|ZP_12703090.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
metallireducens RCH3]
gi|78192871|gb|ABB30638.1| RNA polymerase sigma-70 factor RpoD [Geobacter metallireducens
GS-15]
gi|373561799|gb|EHP88025.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
metallireducens RCH3]
Length = 579
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 156/272 (57%), Gaps = 8/272 (2%)
Query: 262 LEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
LE ESG KA L+ A E A + EL+++ LV+ +A+ Y G+
Sbjct: 314 LEHESGFKAQELSDALHAIDRGE-------AKAKLAKSELVEANLRLVVSIAKKYTNRGL 366
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNRE 380
F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP +
Sbjct: 367 QFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIET 426
Query: 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
I+K+ + + L G+ P EIA+ L L ++R + + S++ IG+ ++
Sbjct: 427 INKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEEDSHL 486
Query: 441 LEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKL 500
+F D+ V SP E V++ ++ + R+L +L RE +VL +R+G+ + +LEE+G+
Sbjct: 487 GDFIEDKGVVSPLEAVIKANLSEQTSRVLSTLTPREEKVLRMRFGIGEKSDHTLEEVGQD 546
Query: 501 FHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
F V++E IR++E KA+ KLR + L F+
Sbjct: 547 FEVTRERIRQIEAKALRKLRHPSRAKKLKSFV 578
>gi|94266972|ref|ZP_01290621.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
gi|93452327|gb|EAT02958.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
Length = 353
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 144/236 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ L+++ LV+ +A+ Y G G+ DL+Q GN+G+++ E+F++ RGYKFSTY +W
Sbjct: 115 AKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWW 174
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++++ +A R I+IP + I+++ K K HG+ P E+A++ G+ +A++
Sbjct: 175 IRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGVEVAKV 234
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+S + + S+D +G+ ++ +F D SP E + ++++ ++ R+L++L R
Sbjct: 235 KSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYENLQSNLRRVLKTLSPR 294
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
E VL LR+GL+ +LEE+G+ F V++E IR++E KA+ KL+ LS F
Sbjct: 295 EEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQLSSF 350
>gi|5921146|dbj|BAA84590.1| RNA polymerase sigma 70 [Helicobacter pylori]
Length = 675
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 436 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 495
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 496 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 555
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 556 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIASSIDHIMREDLKAQIESVLDQLNER 615
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 616 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 673
>gi|389865588|ref|YP_006367829.1| RNA polymerase sigma factor sigB [Modestobacter marinus]
gi|388487792|emb|CCH89354.1| RNA polymerase sigma factor sigB [Modestobacter marinus]
Length = 327
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 148/242 (61%)
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
A G + L+++ LV+ +A+ Y G G+ F DL+Q GNVG+++ E+FD+T+G+KFST
Sbjct: 85 ADGKAAKAHLLEANLRLVVSVAKRYTGHGMTFLDLIQEGNVGLIRAVEKFDYTKGFKFST 144
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +WIR++I++ +A R I++P L +++K+ + R+ + + P E+ L
Sbjct: 145 YATWWIRQAITRAMADSGRTIRLPVHLAEQVNKVVRTRRRVHQELEREPTAEELGLELDL 204
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILE 470
+ I E R + S+DQ +G ++ +F D ++ V Q MK DV +LE
Sbjct: 205 TPERITELLEYSRDLVSLDQTVGADEESRLGDFIEDADAAVAEDAVAFQMMKGDVRNVLE 264
Query: 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSH 530
+L+ RER V+++R+GL+ +P++LE+IGK F +S+E +R++E++ MTKLRD + L
Sbjct: 265 TLEDRERDVVIMRFGLDGEQPRTLEQIGKRFGLSRERVRQIERETMTKLRDPQRADALRD 324
Query: 531 FL 532
+L
Sbjct: 325 YL 326
>gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379748146|ref|YP_005338967.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379755437|ref|YP_005344109.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|379762983|ref|YP_005349380.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|406031675|ref|YP_006730566.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
gi|378800510|gb|AFC44646.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|378805653|gb|AFC49788.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|378810925|gb|AFC55059.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|405130222|gb|AFS15477.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
Length = 488
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 243 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 302
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 303 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 362
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 363 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 422
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 423 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 482
Query: 528 LSHFL 532
L +L
Sbjct: 483 LRDYL 487
>gi|149175263|ref|ZP_01853885.1| transcription initiation factor sigma 70 [Planctomyces maris DSM
8797]
gi|148845872|gb|EDL60213.1| transcription initiation factor sigma 70 [Planctomyces maris DSM
8797]
Length = 561
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFSTY +WIR++I++ +A
Sbjct: 311 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIAD 370
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + +SK++K K L +G+ P E A+ G+SL E R + R
Sbjct: 371 QARTIRIPVHMIETMSKLRKVSKQLLQENGREPTLEETAEVAGISLEETRRVLKISRHPI 430
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D+ +G+ ++ + +F D SP ++ +K + +L++L RER+++ LR+GL
Sbjct: 431 SLDRPVGESEDSYFGDFIEDSDSDSPVNTASQEMLKDKIDHVLKTLTYREREIIKLRFGL 490
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G++F V++E +R++E KA+ KL+ + L F+
Sbjct: 491 GDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLQGFI 536
>gi|160945279|ref|ZP_02092505.1| hypothetical protein FAEPRAM212_02798 [Faecalibacterium prausnitzii
M21/2]
gi|158443010|gb|EDP20015.1| RNA polymerase sigma factor RpoD [Faecalibacterium prausnitzii
M21/2]
gi|295105509|emb|CBL03053.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Faecalibacterium
prausnitzii SL3/3]
Length = 360
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+PF DL+Q GN+G+++ AE+F+ RG+KFSTY +WIR+SI++ +A
Sbjct: 133 LVVSVAKRYAGRGLPFLDLIQEGNLGLMKAAEKFEPERGFKFSTYATWWIRQSITRAIAD 192
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I+IP L I++++K L + +G+ P EIA + ++R + +
Sbjct: 193 QGRTIRIPVHLVESINRVKKTAGDLLHKNGREPTVEEIAAALDMEPDKVRELLQLSQEPI 252
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ +G+ +A +F D P + RQ +++++ +L+SL RE +V+ LR+GL
Sbjct: 253 SLETPVGEEEDAHLEDFIQDEDAGVPVDEAGRQLLRRELLHVLKSLTPREERVITLRFGL 312
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+GK F+V++E +R++E KA+ KLR + L +L
Sbjct: 313 EDGRARTLEELGKEFNVTRERVRQIEAKALRKLRHPSRAKLLRDYL 358
>gi|383819214|ref|ZP_09974490.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
gi|383337185|gb|EID15566.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
Length = 472
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 227 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 286
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 287 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 346
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 347 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 406
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 407 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 466
Query: 528 LSHFL 532
L +L
Sbjct: 467 LRDYL 471
>gi|374608192|ref|ZP_09680991.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553724|gb|EHP80311.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 498
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 147/247 (59%), Gaps = 6/247 (2%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 251 MSWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 310
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 311 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 370
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
K ++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 371 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 430
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 431 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 490
Query: 526 RDLSHFL 532
+ L +L
Sbjct: 491 QVLRDYL 497
>gi|317132028|ref|YP_004091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ethanoligenens
harbinense YUAN-3]
gi|315470007|gb|ADU26611.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ethanoligenens
harbinense YUAN-3]
Length = 372
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 150/237 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +W
Sbjct: 135 ARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P+ EIA+ G+S+ ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKVVRVERQLLQELGRQPQAEEIAELMGMSVDKV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD +P E +K+ + +L++L R
Sbjct: 255 REIMKVAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAASHTLLKEQLGDVLKTLTQR 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL LR+GL+D RP++LEE+G+ F+V++E IR++E KA+ KLR + L FL
Sbjct: 315 EAKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 371
>gi|410995981|gb|AFV97446.1| hypothetical protein B649_05660 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 619
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + HGK P+ IA+ GLS+ ++++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVETIAEEVGLSVEKVKNVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + ++ +F D+ SP + +++ +K + +LE L+ RE+ V
Sbjct: 504 KITKEPISLEAPIGNEEDGRFGDFIEDKMSLSPSDAILKDDLKVQIESVLEQLNEREKAV 563
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G ++D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 564 IKMRFGIMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 617
>gi|365873407|ref|ZP_09412940.1| RNA polymerase sigma factor, sigma-70 family [Thermanaerovibrio
velox DSM 12556]
gi|363983494|gb|EHM09701.1| RNA polymerase sigma factor, sigma-70 family [Thermanaerovibrio
velox DSM 12556]
Length = 390
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 153 AKSKLVEANLRLVVSIAKKYIGRGMLFLDLIQEGNMGLIRAVEKFDYRKGYKFSTYATWW 212
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++L G+ P EIA G++ +
Sbjct: 213 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRSLVMRLGREPSVEEIAAEMGVTADRV 272
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ IG+ +++ +F D+ + SP E Q +++ + +LE L R
Sbjct: 273 EEIQKIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPDEAAANQILREQLEEMLEDLTDR 332
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL LR+GL D +LEE+GK F V++E IR++E KA+ KLR + L FL
Sbjct: 333 EREVLRLRFGLEDGHSHTLEEVGKRFGVTRERIRQIEAKALRKLRHPSRSKRLRDFL 389
>gi|297617785|ref|YP_003702944.1| RpoD subfamily RNA polymerase sigma-70 subunit [Syntrophothermus
lipocalidus DSM 12680]
gi|297145622|gb|ADI02379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Syntrophothermus
lipocalidus DSM 12680]
Length = 361
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 149/241 (61%), Gaps = 8/241 (3%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +W
Sbjct: 124 AKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLMKAVEKFDYRKGYKFSTYATWW 183
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++AL G+ P E+A+ + + +
Sbjct: 184 IRQAITRAIADQARTIRIPVHMVETINKLSRIQRALLQKLGREPTPAEVAEEMDIPVERV 243
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKE----IVMRQHMKKDVFRILES 471
+ + S++ IG+ ++ +F D +SP+E +++R+H+ IL +
Sbjct: 244 MEIMKVAQEPVSLETPIGEEDDSHLGDFITDEDAESPEESASFVLLREHLDG----ILST 299
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
L RE +VL LR+GL+D RP++LEE+G+ F V++E IR++E KA+ KLR + L +
Sbjct: 300 LTDREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDY 359
Query: 532 L 532
+
Sbjct: 360 I 360
>gi|347753174|ref|YP_004860739.1| RpoD subfamily RNA polymerase sigma-70 subunit [Bacillus coagulans
36D1]
gi|347585692|gb|AEP01959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
coagulans 36D1]
Length = 377
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 142/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMQFLDLIQEGNMGLIKAVEKFDYKKGYKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + +++L G+ P EIA+ +S ++R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIAEEMDISPDKVREIIKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 271 SLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|386810761|ref|ZP_10097987.1| RNA polymerase sigma factor RpoD [planctomycete KSU-1]
gi|386405485|dbj|GAB60868.1| RNA polymerase sigma factor RpoD [planctomycete KSU-1]
Length = 550
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFSTY +WIR++I++ +A
Sbjct: 319 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRSIAD 378
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + +SKI+ K L G+ P EI+K +++ E R + R
Sbjct: 379 QARTIRIPVHMIETMSKIRNVSKKLLQEKGREPTIEEISKEVKITVEEARRVLKISRHQI 438
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D+ +G+ ++ + +F D +SP ++ +K + +LE+L RER+++ LRYG+
Sbjct: 439 SLDRPVGESEDSSFGDFIEDEKAESPVSAATQEMLKDKIESVLETLTYREREIIKLRYGI 498
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+GK+F V++E +R++E KA+ KL+ R L FL
Sbjct: 499 GDGYTYTLEEVGKIFKVTRERVRQIEAKAVRKLQHPIRSRKLEGFL 544
>gi|384044875|ref|YP_005492892.1| RNA polymerase sigma factor [Bacillus megaterium WSH-002]
gi|345442566|gb|AEN87583.1| RNA polymerase sigma factor [Bacillus megaterium WSH-002]
Length = 377
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEDMDLTPEKVREILKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 271 SLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|406996156|gb|EKE14619.1| hypothetical protein ACD_12C00386G0002, partial [uncultured
bacterium]
Length = 377
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
RE LIKS LV+ +A+ Y G + F DL+Q GN G+++G E++D RGYKFSTY +W
Sbjct: 140 ARERLIKSNLRLVVSIAKKYLGRRLSFLDLIQEGNQGLIKGVEKYDWRRGYKFSTYATWW 199
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A +R I+IP + I++ K ++ LT G P + EIAK +++ E+
Sbjct: 200 IRQAITRAIADQSRTIRIPVHMVDHINRYYKIQRRLTQKFGHEPSNKEIAKELNITIKEV 259
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + + S+ IGD EF D++ + + V+++ +K + +L++L R
Sbjct: 260 ENLIKISQHPKSLSTPIGDDKETTLEEFISDQNKPTLYDKVLKEFLKGYLNDVLDTLSER 319
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL++R+GL+D + K+LE +G F V++E IR++E KA+ KLR + L FL
Sbjct: 320 EKKVLIMRFGLDDGKTKTLEAVGHEFKVTRERIRQIEAKAIRKLRHPTRAKKLREFL 376
>gi|354615678|ref|ZP_09033420.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353219969|gb|EHB84465.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 347
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 107 GQVAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 166
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ + E+A +G++
Sbjct: 167 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQKLGREATNEELAAESGIAE 226
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ + + R S+D +G +A +F D + V+ + D+ R+L +L
Sbjct: 227 HKVSNLLDHARDPVSLDMPVGSEEDAPLGDFIEDSEAADAENSVISGLLHDDLRRVLATL 286
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+ V+ LRYGL+D +P++L++IG+ F++S+E +R++E++ M KLR E L +
Sbjct: 287 DEREQNVIRLRYGLDDGQPRTLDQIGRHFNLSRERVRQIEREVMAKLRHGERADKLRAY 345
>gi|281417615|ref|ZP_06248635.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum JW20]
gi|281409017|gb|EFB39275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum JW20]
Length = 358
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 132 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIAD 191
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK + + ++R + +
Sbjct: 192 QARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPV 251
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +L++L RE +VL LR+GL
Sbjct: 252 SLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGL 311
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F+V++E IR++E KA+ KLR + L +L
Sbjct: 312 DDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
>gi|225174152|ref|ZP_03728151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiobacter
alkaliphilus AHT 1]
gi|225169937|gb|EEG78732.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiobacter
alkaliphilus AHT 1]
Length = 372
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 146 LVVSIAKKYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 205
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIA +S +R + +
Sbjct: 206 QARTIRIPVHMVETINKLIRVSRQLVQELGREPAPDEIAHVMNISEERVREILKIAQEPV 265
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ V++P E + +K+ + +LE+L RE++VL LR+GL
Sbjct: 266 SLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFELLKEQLDDVLETLTPREKKVLTLRFGL 325
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D R ++LEE+G++F V++E IR++E KA+ KLR + L +L
Sbjct: 326 EDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSKRLKDYL 371
>gi|197120055|ref|YP_002140482.1| RNA polymerase sigma-70 factor RpoD [Geobacter bemidjiensis Bem]
gi|197089415|gb|ACH40686.1| RNA polymerase sigma-70 factor RpoD [Geobacter bemidjiensis Bem]
Length = 584
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 159/271 (58%), Gaps = 6/271 (2%)
Query: 262 LEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIP 321
+E+ESG AS A A + E K LA + EL+++ LV+ +A+ Y G+
Sbjct: 319 IEQESGFKASELANALLA-IEEGEHKAKLA-----KSELVEANLRLVVSIAKKYTNRGLQ 372
Query: 322 FSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREI 381
F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP + I
Sbjct: 373 FLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETI 432
Query: 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYL 441
+K+ + + L G+ P EIA+ L L ++R + + S++ IG+ ++
Sbjct: 433 NKLIRTSRQLVQEIGREPSPEEIAERMALPLDKVRKVLKIAKEPISLETPIGEEEDSHLG 492
Query: 442 EFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLF 501
+F D+ V SP E V++ ++ + R+L +L RE +VL +R+G+ + +LEE+G+ F
Sbjct: 493 DFIEDKGVVSPLEAVIKANLSEQTSRVLSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDF 552
Query: 502 HVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KLR + L F+
Sbjct: 553 EVTRERIRQIEAKALRKLRHPSRAKKLKSFV 583
>gi|453073906|ref|ZP_21976704.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
gi|452765392|gb|EME23649.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
Length = 454
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 149/253 (58%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 201 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 260
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 261 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 320
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 321 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 380
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +L++L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 381 LLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 440
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 441 RHPSRSQVLRDYL 453
>gi|384172595|ref|YP_005553972.1| RNA polymerase sigma factor RpoD [Arcobacter sp. L]
gi|345472205|dbj|BAK73655.1| RNA polymerase sigma factor RpoD [Arcobacter sp. L]
Length = 628
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 146/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 393 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 452
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ EIAK GL + +++
Sbjct: 453 ISRAIADQARTIRIPIHMIETINRINKIIRKGIQENGKEPDVDEIAKEVGLPVDKVKQVI 512
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + K+ +F PD +P + +M++ ++ + +IL L+ RE+ V
Sbjct: 513 KITKEPVSLEAPIGSDDDGKFGDFVPDEKAPTPVDNIMKEDLQGQIDQILGQLNEREQAV 572
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL D ++LEEIGK V++E +R++E A+ KL+ + ++L +++
Sbjct: 573 IRMRFGLMEDASDRTLEEIGKELSVTRERVRQIESSAIKKLKHPKVGKNLKNYV 626
>gi|284991968|ref|YP_003410522.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284065213|gb|ADB76151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 327
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 171/305 (56%), Gaps = 15/305 (4%)
Query: 229 LNSRGRR-LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN+ G+ L A E E+SK ++ ER+ T E++ A + A AA
Sbjct: 36 LNTIGKTALLTAEQEVELSKRIEAGLYAERLLT--ERQLTPALQRDYKALAAD------- 86
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
G + L+++ LV+ +A+ Y G G+ F DL+Q GNVG+++ E+FD+T+G+K
Sbjct: 87 -----GKAAKRHLLEANLRLVVSVAKRYTGHGMTFLDLIQEGNVGLIRAVEKFDYTKGFK 141
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A R I++P L +++K+ + R+ + + P E+
Sbjct: 142 FSTYATWWIRQAITRAMADSGRTIRLPVHLAEQVNKVVRTRRRIHQELEREPTAEELGLE 201
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ I E R + S+DQ +G ++ +F D ++ V Q MK DV
Sbjct: 202 LDMTPERITELLEYSRDLVSLDQTVGADEESRLGDFIEDADAAVAEDAVAFQMMKGDVRN 261
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L +L+ RER V+VLR+GL+ +P++LE+IGK F +S+E +R++E++ M KLRD +
Sbjct: 262 VLSTLEERERDVVVLRFGLDGGQPRTLEQIGKQFGLSRERVRQIERETMAKLRDPQRADA 321
Query: 528 LSHFL 532
L +L
Sbjct: 322 LRDYL 326
>gi|120403451|ref|YP_953280.1| RNA polymerase sigma factor [Mycobacterium vanbaalenii PYR-1]
gi|119956269|gb|ABM13274.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 478
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 233 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 292
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 293 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 352
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 353 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 412
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 413 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 472
Query: 528 LSHFL 532
L +L
Sbjct: 473 LRDYL 477
>gi|420492008|ref|ZP_14990584.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-15]
gi|393108703|gb|EJC09237.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-15]
Length = 679
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 151/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 440 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 499
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + GK P+ +A+ GLSL ++
Sbjct: 500 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKV 559
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + IL+ L+ R
Sbjct: 560 KNVIKVTKEPISLETPVGNDDDGKFWDFVEDKNIVSSIDHIMREDLKAQIESILDQLNER 619
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 620 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 677
>gi|156740279|ref|YP_001430408.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231607|gb|ABU56390.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 541
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 146/240 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G RE+L ++ LV+ +A+ Y G G+ DL+Q GNVG+++ E+FD+ +G+KFSTY
Sbjct: 301 GKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKGFKFSTYA 360
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+++ + + + G+ P D E+++ G+ +
Sbjct: 361 TWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIPV 420
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++RS + S++ +G +++ +F D V +P + Q +++ V ++L L
Sbjct: 421 DKVRSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVEQVLNQL 480
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RER+VL LR+GL D ++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 481 TERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGKKLRDYL 540
>gi|443673287|ref|ZP_21138355.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414102|emb|CCQ16693.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 476
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 149/253 (58%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 223 VAQRRDMTWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 282
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 283 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 342
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 343 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 402
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 403 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 462
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 463 RHPSRSQVLRDYL 475
>gi|404330390|ref|ZP_10970838.1| RNA polymerase sigma factor RpoD [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 369
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A
Sbjct: 143 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIAD 202
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ G+ P EI K LS ++R + +
Sbjct: 203 QARTIRIPVHMVETINKLIRVQRQELQDLGREPTPEEIGKKMDLSPEKVREILKIAQEPV 262
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ K+P + + +K+ + +L++L RE VL LR+GL
Sbjct: 263 SLETPIGEEDDSHLGDFIEDQDAKAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGL 322
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 323 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
>gi|387876811|ref|YP_006307115.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|443306603|ref|ZP_21036391.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
gi|386790269|gb|AFJ36388.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|442768167|gb|ELR86161.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
Length = 501
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 256 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 315
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 316 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 375
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 376 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 435
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 436 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 495
Query: 528 LSHFL 532
L +L
Sbjct: 496 LRDYL 500
>gi|160881641|ref|YP_001560609.1| RpoD family RNA polymerase sigma factor [Clostridium
phytofermentans ISDg]
gi|160430307|gb|ABX43870.1| RNA polymerase, sigma 70 subunit, RpoD family [Clostridium
phytofermentans ISDg]
Length = 372
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 157/270 (58%), Gaps = 7/270 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L+ E VL Q + G ++ L ++ LV+ +A+ Y G G+ F
Sbjct: 108 KEIGKVPLLSA------DEEIVLAQRMEQGDKNAKKRLAEANLRLVVSIAKRYVGRGMQF 161
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 162 LDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 221
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
K+ + ++ L G+ P E+AK + + +R + + S++ IG+ ++ +
Sbjct: 222 KLIRVQRQLLQELGREPFPEEVAKEMNIPVERVREIQKISQEPVSLETPIGEEEDSHLGD 281
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F D +V P E +K+ + +L +L RE++VL LR+GL+D R ++LEE+GK F+
Sbjct: 282 FIQDDNVPVPAEAAAFTLLKEQLMEVLGTLTDREQKVLRLRFGLDDGRARTLEEVGKEFN 341
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
V++E IR++E KA+ KLR R L +L
Sbjct: 342 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 371
>gi|294501280|ref|YP_003564980.1| RNA polymerase sigma factor [Bacillus megaterium QM B1551]
gi|295706627|ref|YP_003599702.1| RNA polymerase sigma factor [Bacillus megaterium DSM 319]
gi|294351217|gb|ADE71546.1| RNA polymerase sigma factor [Bacillus megaterium QM B1551]
gi|294804286|gb|ADF41352.1| RNA polymerase sigma factor [Bacillus megaterium DSM 319]
Length = 377
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEDMDLTPEKVREILKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 271 SLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|410582688|ref|ZP_11319794.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter
subterraneus DSM 13965]
gi|410505508|gb|EKP95017.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter
subterraneus DSM 13965]
Length = 432
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 148/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ AE+FD+ +G+KFSTY +W
Sbjct: 195 AKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFDYRKGFKFSTYATWW 254
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIAK G+ ++
Sbjct: 255 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTPEEIAKEMGIEPEKV 314
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +P E + +++ + +L +L R
Sbjct: 315 REIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASQLLLREQLEDVLHTLTDR 374
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL+D R ++LEE+G++F V++E IR++E KA+ KLR + L +L
Sbjct: 375 EQKVLRLRFGLDDGRQRTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 431
>gi|385799581|ref|YP_005835985.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halanaerobium
praevalens DSM 2228]
gi|309388945|gb|ADO76825.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halanaerobium
praevalens DSM 2228]
Length = 364
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 147/238 (61%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +++L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+GYKFSTY +
Sbjct: 126 WAKQQLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLMKAVDKFDYTKGYKFSTYATW 185
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I++P + I+K+ + + L G+ P+D EI +S +
Sbjct: 186 WIRQAITRSIADQARTIRVPVHMVETINKLIRVSRQLLQEKGREPKDEEIGAEMDISAEK 245
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + + S++ IG+ ++ +F D +P +K+ + +L++L
Sbjct: 246 VREIMKISQDPVSLETPIGEEEDSHLGDFIEDVDSPAPASAASYILLKEQLNDVLDTLTD 305
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE++VL LR+G+ D RP++LEE+GK F V++E IR++E KA+ KLR + + +L
Sbjct: 306 REKRVLELRFGIEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKIKDYL 363
>gi|420399541|ref|ZP_14898746.1| RNA polymerase sigma factor [Helicobacter pylori CPY3281]
gi|393019690|gb|EJB20831.1| RNA polymerase sigma factor [Helicobacter pylori CPY3281]
Length = 670
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 431 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 490
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 491 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 550
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 551 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNER 610
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 611 ERAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 668
>gi|168704760|ref|ZP_02737037.1| transcription initiation factor sigma 70 [Gemmata obscuriglobus UQM
2246]
Length = 556
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 145/248 (58%)
Query: 285 VLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTR 344
++KQ A + +L LV+ +A+ YR G+ F DL+Q GN G+++ ++++H R
Sbjct: 301 IMKQRFAEYEQAKRDLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEHRR 360
Query: 345 GYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEI 404
G+KFSTY +WIR++I++ +A AR I+IP + +SK++ K L G+ P E
Sbjct: 361 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMIETMSKLRNVSKQLLQELGREPTVQET 420
Query: 405 AKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKD 464
A +S E + + R S+D+ +G+ ++ + +F D SV+SP + +K
Sbjct: 421 ADAAKISYEECKRVLKISRQPISLDRPVGESEDSYFGDFIEDNSVESPVNAATNEMLKDK 480
Query: 465 VFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
+ +L++L RER+++ LRYGL D +LEE+G++F V++E +R++E KA+ KL+
Sbjct: 481 IEGVLKTLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVR 540
Query: 525 CRDLSHFL 532
R L FL
Sbjct: 541 SRQLEGFL 548
>gi|148654464|ref|YP_001274669.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148566574|gb|ABQ88719.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 541
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 146/240 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G RE+L ++ LV+ +A+ Y G G+ DL+Q GNVG+++ E+FD+ +G+KFSTY
Sbjct: 301 GKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKGFKFSTYA 360
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+++ + + + G+ P D E+++ G+ +
Sbjct: 361 TWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIPV 420
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++RS + S++ +G +++ +F D V +P + Q +++ V ++L L
Sbjct: 421 DKVRSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVEQVLNQL 480
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RER+VL LR+GL D ++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 481 TERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGKKLRDYL 540
>gi|108799152|ref|YP_639349.1| RNA polymerase sigma factor [Mycobacterium sp. MCS]
gi|119868267|ref|YP_938219.1| RNA polymerase sigma factor [Mycobacterium sp. KMS]
gi|108769571|gb|ABG08293.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694356|gb|ABL91429.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
Length = 480
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 150/253 (59%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 227 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 286
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 287 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 346
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 347 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 406
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 407 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 466
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 467 RHPSRSQVLRDYL 479
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 181/317 (57%), Gaps = 6/317 (1%)
Query: 208 LPSEALQEGLKQPTIFS--AERALNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTLE 263
+P+ + QPT+ + L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTAKTNQTQPQPTLNADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQRMMSLLEAKEGLS 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ G+ WA + +SE L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KQLGREPQQLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEF 443
I++ ++ L G+ EIA L A+IR R S+D ++GD + + E
Sbjct: 180 IKRTQRELAQKLGRSATPAEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTELSEL 239
Query: 444 APDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHV 503
D V SP + ++ +++D+ +L L ++R+V+ LR+GL+D + SL +IG+ ++
Sbjct: 240 LEDSGV-SPDTFITQELLRQDLANLLAELTPQQREVISLRFGLSDGKELSLAKIGQRMNI 298
Query: 504 SKEWIRKLEKKAMTKLR 520
S+E +R+LE +A+ LR
Sbjct: 299 SRERVRQLEHQALAHLR 315
>gi|312143990|ref|YP_003995436.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halanaerobium
hydrogeniformans]
gi|311904641|gb|ADQ15082.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halanaerobium
hydrogeniformans]
Length = 360
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 147/238 (61%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +++L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 122 WAKQQLVEANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLMKAVEKFDYTKGYKFSTYATW 181
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I++P + I+K+ + + L G+ P+ EI + +S +
Sbjct: 182 WIRQAITRSIADQARTIRVPVHMVETINKLIRVSRQLLQEKGREPKPEEIGEEMDISAEK 241
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + + S++ IG+ ++ +F D +P +K+ + +L++L
Sbjct: 242 VREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDSPAPASAASYILLKEQLDGVLDTLTE 301
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE++VL LR+G+ D RP++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 302 REKRVLELRFGIEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 359
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 153/254 (60%), Gaps = 17/254 (6%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ A ++ + L+Q A G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 156 WAELAELTVKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 215
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++
Sbjct: 216 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 275
Query: 395 HGKYPEDIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCLNAKYLEFAPD 446
G+ +IAK + ++ RS S +++ D ++GD L +
Sbjct: 276 QGRTATIEDIAKELEMDAPQVREVLMRVPRSVSLEIKVGKEKDTELGDLLETEE------ 329
Query: 447 RSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506
SP++++MR+ +++D+ ++L L SRER V+ +R+GL D P SL EIG+ +S+E
Sbjct: 330 ---TSPEDVLMREALQRDLQQLLADLTSRERDVICMRFGLGDGHPYSLAEIGRALELSRE 386
Query: 507 WIRKLEKKAMTKLR 520
+R++E KA+ KLR
Sbjct: 387 RVRQIEAKALQKLR 400
>gi|452948582|gb|EME54060.1| RNA polymerase sigma factor SigB [Amycolatopsis decaplanina DSM
44594]
Length = 317
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 143/231 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+++G+KFSTY
Sbjct: 77 GHSAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 136
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ E+A +G+
Sbjct: 137 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 196
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 197 HKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 256
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D RE QV+ LRYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E
Sbjct: 257 DDRESQVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGE 307
>gi|440778267|ref|ZP_20957033.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436721370|gb|ELP45505.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 264 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 323
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 324 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 383
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 384 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 443
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 444 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 503
Query: 528 LSHFL 532
L +L
Sbjct: 504 LRDYL 508
>gi|56421017|ref|YP_148335.1| RNA polymerase sigma factor RpoD [Geobacillus kaustophilus HTA426]
gi|261417657|ref|YP_003251339.1| RNA polymerase sigma factor RpoD [Geobacillus sp. Y412MC61]
gi|297529352|ref|YP_003670627.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
C56-T3]
gi|319767537|ref|YP_004133038.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
Y412MC52]
gi|375009568|ref|YP_004983201.1| RNA polymerase sigma factor rpoD [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448238761|ref|YP_007402819.1| RNA polymerase sigma factor [Geobacillus sp. GHH01]
gi|56380859|dbj|BAD76767.1| DNA-directed RNA polymerase major sigma-43 factor (sigma-A)
[Geobacillus kaustophilus HTA426]
gi|261374114|gb|ACX76857.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y412MC61]
gi|297252604|gb|ADI26050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
C56-T3]
gi|317112403|gb|ADU94895.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y412MC52]
gi|359288417|gb|AEV20101.1| RNA polymerase sigma factor rpoD [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207603|gb|AGE23068.1| RNA polymerase sigma factor [Geobacillus sp. GHH01]
Length = 375
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 149 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 208
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 209 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPV 268
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 269 SLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 328
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 329 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
>gi|126434760|ref|YP_001070451.1| RNA polymerase sigma factor [Mycobacterium sp. JLS]
gi|126234560|gb|ABN97960.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 480
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 150/253 (59%), Gaps = 6/253 (2%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 227 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 286
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 287 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 346
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
E+AK ++ ++ + R S+DQ IGD +++ +F D + V
Sbjct: 347 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFT 406
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KL
Sbjct: 407 LLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 466
Query: 520 RDSETCRDLSHFL 532
R + L +L
Sbjct: 467 RHPSRSQVLRDYL 479
>gi|379709850|ref|YP_005265055.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
gi|374847349|emb|CCF64419.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
Length = 454
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 147/247 (59%), Gaps = 6/247 (2%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
F W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 207 FNWIIRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 266
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 267 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 326
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
K ++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 327 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 386
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 387 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 446
Query: 526 RDLSHFL 532
+ L +L
Sbjct: 447 QVLRDYL 453
>gi|312110191|ref|YP_003988507.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
Y4.1MC1]
gi|336234655|ref|YP_004587271.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|423719224|ref|ZP_17693406.1| RNA polymerase, rpoD subfamily, sigma-70 subunit [Geobacillus
thermoglucosidans TNO-09.020]
gi|311215292|gb|ADP73896.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y4.1MC1]
gi|335361510|gb|AEH47190.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus
thermoglucosidasius C56-YS93]
gi|383368127|gb|EID45402.1| RNA polymerase, rpoD subfamily, sigma-70 subunit [Geobacillus
thermoglucosidans TNO-09.020]
Length = 377
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 271 SLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|383761703|ref|YP_005440685.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381381971|dbj|BAL98787.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 433
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 146/245 (59%), Gaps = 6/245 (2%)
Query: 294 WYCR------EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
WY R E LIK+ LV+ +A+ Y G G+PF DL+Q GN+G+++ ++FD++RGYK
Sbjct: 189 WYVRDGQAAQEHLIKANSRLVVSVAKKYVGRGVPFLDLIQEGNIGLIRAVKKFDYSRGYK 248
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR+++++ +A R I++P + +I+++ + + L G+ P EIA+
Sbjct: 249 FSTYATWWIRQAVTRAIADQGRTIRVPVHMYEQINRLTRTSRQLVQELGRDPTTEEIAEE 308
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
G+S ++ + S++ +G+ ++ +F D +P E +Q +++ +
Sbjct: 309 LGVSPRKVEHIMRVSQRPLSLEMPVGEEEDSYLGDFIEDEDADAPGEAAGQQLLREVIDE 368
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
I +SL RE ++L LR+GL D +LEE+GK F V++E IR++E +A+++LR R
Sbjct: 369 IFQSLTPREVRILQLRFGLVDGYCYTLEEVGKKFGVTRERIRQIEAQALSRLRHPSRSRK 428
Query: 528 LSHFL 532
L +L
Sbjct: 429 LRDYL 433
>gi|374853841|dbj|BAL56738.1| RNA polymerase primary sigma factor [uncultured prokaryote]
Length = 554
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 148/267 (55%), Gaps = 29/267 (10%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ LI++ LV+ +A+ Y G GIPF DL+Q GN+G+L+ E+FDHT+GYKFSTY +W
Sbjct: 288 AKKALIRANLRLVVSVAKRYMGRGIPFVDLIQEGNIGLLRAVEKFDHTKGYKFSTYATWW 347
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE- 414
IR++IS+ +A AR I+IP + I+++ + ++ L G+ P EIA L L E
Sbjct: 348 IRQAISRAIADQARTIRIPVHMFETINRLMRIQRRLVQELGREPTSEEIALEMDLLLPEE 407
Query: 415 ----------------------IRSASECLRIV------GSIDQKIGDCLNAKYLEFAPD 446
R+A++ RI+ S++ +G ++ +F D
Sbjct: 408 VQQILSARARGERVDPSLMRKWNRAAAKVRRIIRIAQEPMSLEMPVGQEESSSLGDFIED 467
Query: 447 RSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506
++ P + +Q +K+ + +L L RER VL +R+GL D + +LEE+G+ F V++E
Sbjct: 468 ETIPGPVDAASKQLLKEQIRSVLGYLSERERDVLEMRFGLKDGQDHTLEEVGQYFGVTRE 527
Query: 507 WIRKLEKKAMTKLRDSETCRDLSHFLV 533
IR++E KA+ KLR R L +L
Sbjct: 528 RIRQIEAKALRKLRHPTRSRQLRDYLA 554
>gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481653|gb|AEF40213.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 503
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 152/251 (60%), Gaps = 4/251 (1%)
Query: 286 LKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
L+Q+L++ G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 252 LRQNLSWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 311
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 312 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 371
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHM 461
E+AK +S ++ + R S+DQ IGD +++ +F D + V +
Sbjct: 372 EELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLL 431
Query: 462 KKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521
+ + +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 432 QDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 491
Query: 522 SETCRDLSHFL 532
+ L +L
Sbjct: 492 PSRSQVLRDYL 502
>gi|420426283|ref|ZP_14925339.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-9]
gi|393045003|gb|EJB45993.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-9]
Length = 680
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 151/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 441 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 500
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + GK P+ +A+ GLSL ++
Sbjct: 501 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKV 560
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + R S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 561 KNVIKVTREPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 620
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 621 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 678
>gi|239827752|ref|YP_002950376.1| RNA polymerase sigma factor RpoD [Geobacillus sp. WCH70]
gi|239808045|gb|ACS25110.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
WCH70]
Length = 374
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 148 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 207
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 208 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPV 267
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 268 SLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 327
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 328 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|407796193|ref|ZP_11143149.1| RNA polymerase sigma factor RpoD [Salimicrobium sp. MJ3]
gi|407019547|gb|EKE32263.1| RNA polymerase sigma factor RpoD [Salimicrobium sp. MJ3]
Length = 375
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 147/238 (61%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ + EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +
Sbjct: 137 FAKRELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATW 196
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIA+ L+ +
Sbjct: 197 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGREPTPEEIAEEMELTPDK 256
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + + S++ IG+ ++ +F D+ SP + + +K+ + +L++L
Sbjct: 257 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTD 316
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 317 REENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 374
>gi|89100479|ref|ZP_01173341.1| RNA polymerase sigma factor [Bacillus sp. NRRL B-14911]
gi|89084822|gb|EAR63961.1| RNA polymerase sigma factor [Bacillus sp. NRRL B-14911]
Length = 374
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 148 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 207
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 208 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPDKVREILKIAQEPV 267
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 268 SLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 327
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 328 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|392416014|ref|YP_006452619.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615790|gb|AFM16940.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 496
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 370
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 371 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 430
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 431 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 490
Query: 528 LSHFL 532
L +L
Sbjct: 491 LRDYL 495
>gi|296171852|ref|ZP_06852951.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893936|gb|EFG73705.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 503
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 258 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 317
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 318 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 377
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 378 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 437
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 438 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 497
Query: 528 LSHFL 532
L +L
Sbjct: 498 LRDYL 502
>gi|417749579|ref|ZP_12397971.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458801|gb|EGO37758.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 496
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 370
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 371 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 430
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 431 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 490
Query: 528 LSHFL 532
L +L
Sbjct: 491 LRDYL 495
>gi|118465794|ref|YP_882772.1| RNA polymerase sigma factor [Mycobacterium avium 104]
gi|254776035|ref|ZP_05217551.1| RNA polymerase sigma factor [Mycobacterium avium subsp. avium ATCC
25291]
gi|118167081|gb|ABK67978.1| sigma factor MysA [Mycobacterium avium 104]
Length = 496
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 370
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 371 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 430
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 431 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 490
Query: 528 LSHFL 532
L +L
Sbjct: 491 LRDYL 495
>gi|429730663|ref|ZP_19265309.1| Sigma-70 region 2 [Corynebacterium durum F0235]
gi|429147101|gb|EKX90131.1| Sigma-70 region 2 [Corynebacterium durum F0235]
Length = 329
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 147/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 89 GKHARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L + G+ + E+A+ +G+
Sbjct: 149 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQNLGREATNEELAEESGIDE 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++I R S+D +G A +F D + V+ D+ +L SL
Sbjct: 209 SKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAEAAVVASLRHSDIRSVLASL 268
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+ RE++V+ LRYGL+D P++L++IG+ F +S+E +R++E++ M+KLRD E L +
Sbjct: 269 EVREQEVISLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMSKLRDGERAEKLREY 327
>gi|336114403|ref|YP_004569170.1| RpoD subfamily RNA polymerase sigma-70 subunit [Bacillus coagulans
2-6]
gi|335367833|gb|AEH53784.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
coagulans 2-6]
Length = 377
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 142/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMQFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + +++L G+ P EIA+ +S ++R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIAEEMDISPDKVREIIKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 271 SLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|212638699|ref|YP_002315219.1| RNA polymerase sigma factor RpoD [Anoxybacillus flavithermus WK1]
gi|212560179|gb|ACJ33234.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Anoxybacillus flavithermus WK1]
Length = 372
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 146 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 205
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 206 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEEMDLTPEKVREILKIAQEPV 265
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 266 SLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 325
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 326 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
>gi|433444375|ref|ZP_20409294.1| RNA polymerase sigma factor rpoD [Anoxybacillus flavithermus
TNO-09.006]
gi|432001667|gb|ELK22540.1| RNA polymerase sigma factor rpoD [Anoxybacillus flavithermus
TNO-09.006]
Length = 372
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 146 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 205
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 206 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEEMDLTPEKVREILKIAQEPV 265
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 266 SLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 325
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 326 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
>gi|420505519|ref|ZP_15004035.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-74]
gi|393117051|gb|EJC17555.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-74]
Length = 679
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 440 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 499
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 500 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 559
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 560 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 619
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 620 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 677
>gi|385221589|ref|YP_005770722.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SouthAfrica7]
gi|317010368|gb|ADU84115.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SouthAfrica7]
Length = 685
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 154/239 (64%), Gaps = 3/239 (1%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 446 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 505
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE-IAKYTGLSLAE 414
I+++IS+ +A AR I+IP + I++I K + +GK P D+E +A+ GLSL +
Sbjct: 506 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKYMQENGKEP-DLELVAEEVGLSLDK 564
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+
Sbjct: 565 VKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIDGVLDQLNE 624
Query: 475 RERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 625 REKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 683
>gi|217032875|ref|ZP_03438353.1| hypothetical protein HPB128_1g12 [Helicobacter pylori B128]
gi|298736968|ref|YP_003729498.1| RNA polymerase primary sigma factor [Helicobacter pylori B8]
gi|216945415|gb|EEC24081.1| hypothetical protein HPB128_1g12 [Helicobacter pylori B128]
gi|298356162|emb|CBI67034.1| RNA polymerase primary sigma factor [Helicobacter pylori B8]
Length = 679
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 440 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 499
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 500 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 559
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 560 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 619
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 620 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 677
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 172/290 (59%), Gaps = 2/290 (0%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHL 290
GR RL E ++++ + + + E +K +L + + + + W A VS+ R + L
Sbjct: 123 GRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSDVRKFRSIL 182
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
+E ++ + LV+ +A+ Y G+ DL+Q G++G+++ AE+FD +G+KFST
Sbjct: 183 HNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFST 242
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +W+++++++ +A H+R I++P L IS I+K + L G+ P + EIAK +
Sbjct: 243 YATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDM 302
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILE 470
S+ ++R+ + + S+++ + + + L + +SP+E V + ++ D+ ++
Sbjct: 303 SVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEKSMLRDDLENVIN 362
Query: 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
SL RER V+ +RYGL+D R K+LEEIG++F V++E +R++E KA+ KLR
Sbjct: 363 SLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 412
>gi|162452723|ref|YP_001615090.1| RNA polymerase sigma factor RpoD [Sorangium cellulosum So ce56]
gi|161163305|emb|CAN94610.1| RNA polymerase sigma factor RpoD [Sorangium cellulosum So ce56]
Length = 639
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ EL+++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 401 AKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWW 460
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L +G+ P EIA+ L L ++
Sbjct: 461 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMELPLDKV 520
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+SV SP E V+ ++ + ++L++L R
Sbjct: 521 RKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVISPAEAVINMNLAEQTRKVLKTLTPR 580
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL +R+G+ + +LEE+G+ F V++E IR++E KA+ KLR + L F+
Sbjct: 581 EEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKQLKSFI 637
>gi|218962087|ref|YP_001741862.1| RNA polymerase sigma factor [Candidatus Cloacamonas
acidaminovorans]
gi|167730744|emb|CAO81656.1| RNA polymerase sigma factor [Candidatus Cloacamonas acidaminovorans
str. Evry]
Length = 579
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 147/238 (61%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ E+I++ LV+ +A++Y G+ F DL+Q GN G+++ E++D+ +GYKFSTY +W
Sbjct: 336 AQNEMIEANVRLVISIAKHYNNRGLEFLDLIQEGNTGLMRAVEKYDYRKGYKFSTYATWW 395
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + L G+ P EI++ + + +I
Sbjct: 396 IRQAITRAIADQARTIRIPVHMIESINKINRTSRRLMQKLGREPYPEEISEVLDIPVEKI 455
Query: 416 RSASECLRIVGSIDQKIG-DCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
++ + S+D+ IG D ++ +F DR++ SP+ + R +KK V +L++L
Sbjct: 456 KNIMSISKEPVSLDKPIGHDSEDSILGDFIEDRTIISPERLAERSLLKKQVDEVLKTLTP 515
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE +V+ LR+G++D ++LEE+G +F V++E IR++E KA+ KLR L FL
Sbjct: 516 REERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALKKLRHPSRAAILQQFL 573
>gi|117924113|ref|YP_864730.1| RpoD family RNA polymerase sigma factor [Magnetococcus marinus
MC-1]
gi|117607869|gb|ABK43324.1| RNA polymerase, sigma 70 subunit, RpoD [Magnetococcus marinus MC-1]
Length = 683
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F+ RGYKFSTY +W
Sbjct: 445 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTYATWW 504
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + + G+ P EIA+ +SL ++
Sbjct: 505 IRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMVQEMGREPTPEEIAERMSMSLEKV 564
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ +GD ++ +F D+S+ SP E + +++ R+L++L SR
Sbjct: 565 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKSMLSPSEHAIMSNLRDTTGRVLQTLTSR 624
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL +R+G+ +LEE+GK F+V++E IR++E KA+ KLR R L FL
Sbjct: 625 EEHVLRMRFGIGLPTDHTLEEVGKQFNVTRERIRQIEAKALRKLRHPTRSRKLRSFL 681
>gi|338813221|ref|ZP_08625355.1| RNA polymerase sigma factor RpoD [Acetonema longum DSM 6540]
gi|337274828|gb|EGO63331.1| RNA polymerase sigma factor RpoD [Acetonema longum DSM 6540]
Length = 701
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 147/245 (60%)
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+++ G + L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYK
Sbjct: 456 KYIEQGEMAKRSLSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYK 515
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+ P EIA+
Sbjct: 516 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPVPEEIARA 575
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+S+ +R + + S++ IG+ ++ +F D+ +P E +K+ +
Sbjct: 576 MDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEE 635
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE +VL LR+GL+D R ++LEE+G+ F V++E IR++E KA+ KLR +
Sbjct: 636 VLETLTPREEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKK 695
Query: 528 LSHFL 532
L FL
Sbjct: 696 LKDFL 700
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 167/279 (59%), Gaps = 1/279 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + K VQ ++ LE+ + L +E + + WA A +SE L + G + ++
Sbjct: 28 EIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDTAKRRMV 87
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I+
Sbjct: 88 EANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAIT 147
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A +R I++P + +++KI+KA++ L+ +G+ +E+A L+ ++R E
Sbjct: 148 RAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQQYGRAATVMELAAELELTPKQVRDYLEK 207
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLV 481
R S+D ++GD + + E D SP+E + +++D+ R++ L +++QVL
Sbjct: 208 ARQPLSLDLRVGDNQDTELSELLEDEG-PSPEEFATQAALRRDLDRLMGDLTPQQQQVLR 266
Query: 482 LRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
LR+GL D + +L +IG++ +S+E +R++E++A+TKLR
Sbjct: 267 LRFGLTDGQTLTLAKIGEMLSISRERVRQIEREALTKLR 305
>gi|1710683|sp|P52328.1|RPSD2_BACSP RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|149623|gb|AAA25264.1| RNA polymerase sigma-subunit [Leptospira borgpetersenii]
Length = 377
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDH +G+KFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIA LS+ ++R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P + + +K+ + +L++L RE VL LR+GL
Sbjct: 271 SLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|94263094|ref|ZP_01286913.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
gi|93456637|gb|EAT06745.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
Length = 540
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 144/236 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ L+++ LV+ +A+ Y G G+ DL+Q GN+G+++ E+F++ RGYKFSTY +W
Sbjct: 302 AKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWW 361
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++++ +A R I+IP + I+++ K K HG+ P E+A++ G+ +A++
Sbjct: 362 IRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGVEVAKV 421
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+S + + S+D +G+ ++ +F D SP E + ++++ ++ R+L++L R
Sbjct: 422 KSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYENLQSNLRRVLKTLSPR 481
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
E VL LR+GL+ +LEE+G+ F V++E IR++E KA+ KL+ LS F
Sbjct: 482 EEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQLSSF 537
>gi|375094942|ref|ZP_09741207.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655675|gb|EHR50508.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 346
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 146/239 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+++G+KFSTY
Sbjct: 106 GQRAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 165
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ E+A G++
Sbjct: 166 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATHEELAAEAGIAE 225
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ S + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 226 EKVASLLDHARDPVSLDMPVGSEEDAPLGDFIEDAEATDAESAVISGLLQDDLRRVLATL 285
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE+ V+ LRYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E L +
Sbjct: 286 DDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGERADRLRAY 344
>gi|393201582|ref|YP_006463424.1| DNA-directed RNA polymerase, sigma subunit [Solibacillus silvestris
StLB046]
gi|406664445|ref|ZP_11072220.1| Sigma-A [Bacillus isronensis B3W22]
gi|327440913|dbj|BAK17278.1| DNA-directed RNA polymerase, sigma subunit [Solibacillus silvestris
StLB046]
gi|405387293|gb|EKB46717.1| Sigma-A [Bacillus isronensis B3W22]
Length = 375
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDH +G+KFSTY +W
Sbjct: 138 ARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHRKGFKFSTYATWW 197
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + L+ ++
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKV 257
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +SP + + +K+ + +L++L R
Sbjct: 258 REILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDR 317
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 318 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
>gi|384896828|ref|YP_005772256.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Lithuania75]
gi|317011933|gb|ADU82541.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Lithuania75]
Length = 680
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 441 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 500
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 501 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 560
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 561 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 620
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 621 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 678
>gi|253827499|ref|ZP_04870384.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|313141707|ref|ZP_07803900.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|253510905|gb|EES89564.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|313130738|gb|EFR48355.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
Length = 616
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 149/238 (62%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +W
Sbjct: 377 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 436
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + GK P+ +IA+ GL + ++
Sbjct: 437 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPDIDKIAEEVGLPVDKV 496
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ IG+ + K+ +F D+ P E ++++ +K+ + +L+ L+ R
Sbjct: 497 KNVIKITKEPISLEAPIGNGEDGKFGDFVEDKGSVGPMESILKEDLKEQIDDVLDQLNER 556
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 557 EKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 614
>gi|207093142|ref|ZP_03240929.1| RNA polymerase sigma factor RpoD [Helicobacter pylori
HPKX_438_AG0C1]
Length = 319
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 80 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 139
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 140 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 199
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 200 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNER 259
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 260 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 317
>gi|138896056|ref|YP_001126509.1| RNA polymerase sigma factor RpoD [Geobacillus thermodenitrificans
NG80-2]
gi|196248949|ref|ZP_03147649.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp.
G11MC16]
gi|134267569|gb|ABO67764.1| RNA polymerase sigma factor RpoD [Geobacillus thermodenitrificans
NG80-2]
gi|196211825|gb|EDY06584.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp.
G11MC16]
Length = 375
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 149 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 208
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 209 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPV 268
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP E + +K+ + +L++L RE VL LR+GL
Sbjct: 269 SLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 328
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 329 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 175/292 (59%), Gaps = 3/292 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ +E+IK +L+ + G+ + + WA AA ++ L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQKGRTATISELAEELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + + D SP++ ++KD+ +++ L
Sbjct: 200 KQVREYLEKSRQPISLDVRVGDNNDTELGDMLEDTGA-SPEDYATYSSLRKDLDKLMTDL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
++R+V+ LR+GL+D +P +L +IG ++S+E +R++E++A+ KLR +T
Sbjct: 259 TPQQREVISLRFGLSDGKPLTLAKIGDCLNISRERVRQIEREALAKLRKQKT 310
>gi|386752071|ref|YP_006225290.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi169]
gi|384558329|gb|AFH98796.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi169]
Length = 662
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 423 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 482
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 483 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 542
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 543 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 602
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 603 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 660
>gi|420436494|ref|ZP_14935487.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-28]
gi|393054805|gb|EJB55729.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-28]
Length = 666
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 427 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 486
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 487 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 546
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 547 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDRIMREDLKAQIESVLDQLNER 606
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 607 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 664
>gi|425788721|ref|YP_007016641.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Aklavik117]
gi|425627036|gb|AFX90504.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Aklavik117]
Length = 681
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 442 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 501
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 502 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 561
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 562 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 621
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 622 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 679
>gi|307721137|ref|YP_003892277.1| RNA polymerase sigma-70 subunit RpoD [Sulfurimonas autotrophica DSM
16294]
gi|306979230|gb|ADN09265.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfurimonas autotrophica
DSM 16294]
Length = 615
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 380 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQA 439
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ IAK GLS+ ++++
Sbjct: 440 ISRAIADQARTIRIPIHMIETINRINKIMRKHLQENGKEPDVDTIAKEVGLSVEKVKNVI 499
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG + ++ +F D++ SP + +++ ++ + ++LE L+ RE+ V
Sbjct: 500 KITKEPISLEAPIGSEDDGRFGDFIEDKTSLSPSDAILKDDLRIQIEQVLEQLNEREKAV 559
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ LR+G ++D ++LEEIGK V++E +R++E A+ KL+ + R L +++
Sbjct: 560 IKLRFGIMDDESDRTLEEIGKELSVTRERVRQIESSAIKKLKHPKVGRKLKNYI 613
>gi|269925873|ref|YP_003322496.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269789533|gb|ACZ41674.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 326
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 139/228 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R +I+ LV+ +AR Y G G+P SDL++ GN+G+++ A++FD+ RGY+FSTY
Sbjct: 88 GEMARRRMIECNLRLVVSIARRYAGRGLPLSDLIEEGNLGLMRAADKFDYRRGYRFSTYA 147
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A +R +++P + + I K L+ G+ P EIA ++
Sbjct: 148 TWWIRQAVTRALASQSRVVRLPVHVTELMHNITKVSHRLSQELGREPTSEEIAAELNITP 207
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+R + + S++Q G+ + E D +++SP + V R +++ + +L+ L
Sbjct: 208 ERVREVVKASQYPMSLEQPYGEDGDGTVEEIIEDPNIESPADQVSRDILREQILALLDDL 267
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RERQVL LRYGL + +LEE+GK+ V++E IR++EK+A++KLR
Sbjct: 268 TDRERQVLDLRYGLTGNHSYTLEEVGKVLGVTRERIRQIEKEALSKLR 315
>gi|184155321|ref|YP_001843661.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum IFO 3956]
gi|227514580|ref|ZP_03944629.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
fermentum ATCC 14931]
gi|260662165|ref|ZP_05863061.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum 28-3-CHN]
gi|183226665|dbj|BAG27181.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum IFO 3956]
gi|227086991|gb|EEI22303.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
fermentum ATCC 14931]
gi|260553548|gb|EEX26440.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum 28-3-CHN]
Length = 380
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 143/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 143 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 202
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 203 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMDTQKV 262
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D SP + + MKK + +L++L R
Sbjct: 263 RDILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDR 322
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+G++F V++E IR++E KA+ KLR + L FL
Sbjct: 323 EENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|15644718|ref|NP_206888.1| RNA polymerase sigma factor RpoD [Helicobacter pylori 26695]
gi|410023322|ref|YP_006892575.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Rif1]
gi|410501091|ref|YP_006935618.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Rif2]
gi|410681608|ref|YP_006934010.1| RNA polymerase sigma factor RpoD [Helicobacter pylori 26695]
gi|419416114|ref|ZP_13956698.1| RNA polymerase sigma factor RpoD [Helicobacter pylori P79]
gi|2500785|sp|P55993.1|RPOD_HELPY RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-70
gi|2313167|gb|AAD07156.1| RNA polymerase sigma-70 factor (rpoD) [Helicobacter pylori 26695]
gi|384375677|gb|EIE30945.1| RNA polymerase sigma factor RpoD [Helicobacter pylori P79]
gi|409893249|gb|AFV41307.1| RNA polymerase sigma factor RpoD [Helicobacter pylori 26695]
gi|409894979|gb|AFV42901.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Rif1]
gi|409896642|gb|AFV44496.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Rif2]
Length = 671
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 432 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 491
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 492 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 551
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 552 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 611
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 612 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 669
>gi|39998179|ref|NP_954130.1| RNA polymerase sigma-70 factor RpoD [Geobacter sulfurreducens PCA]
gi|409913534|ref|YP_006891999.1| RNA polymerase sigma-70 factor RpoD [Geobacter sulfurreducens
KN400]
gi|39985125|gb|AAR36480.1| RNA polymerase sigma-70 factor RpoD [Geobacter sulfurreducens PCA]
gi|298507117|gb|ADI85840.1| RNA polymerase sigma-70 factor RpoD [Geobacter sulfurreducens
KN400]
Length = 577
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ EL+++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 340 AKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 399
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P EIA+ L L ++
Sbjct: 400 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKV 459
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ V SP E V++ ++ + R+L +L R
Sbjct: 460 RKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTARVLATLTPR 519
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL +R+G+ + +LEE+G+ F V++E IR++E KA+ KLR + L F+
Sbjct: 520 EEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLRSFV 576
>gi|420395954|ref|ZP_14895178.1| RNA polymerase sigma factor [Helicobacter pylori CPY1124]
gi|393012166|gb|EJB13349.1| RNA polymerase sigma factor [Helicobacter pylori CPY1124]
Length = 662
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 423 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 482
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 483 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 542
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 543 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 602
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 603 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 660
>gi|384895469|ref|YP_005769458.1| DNA-directed RNA polymerase sigma subunit RpoD [Helicobacter pylori
35A]
gi|315586085|gb|ADU40466.1| DNA-directed RNA polymerase sigma subunit RpoD [Helicobacter pylori
35A]
Length = 680
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 441 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 500
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 501 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 560
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 561 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 620
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 621 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 678
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 172/288 (59%), Gaps = 3/288 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ +K +Q + LE+ K TL K+ +L WA+AA +SE+ L+ +
Sbjct: 20 RIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQ 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI++ ++ L+ G+ E+A+ LS
Sbjct: 140 YWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELAEALELST 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R R S+D K+GD + + E D+ +SP++ ++ D+ +++ L
Sbjct: 200 EQVREYLGKARQPLSLDLKVGDNNDTELGELLEDKG-QSPEDFTDYSCLQFDLKKMMSEL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++ V+ LRYGL D +P +L +IG + +S+E +R++E++A+TKLR
Sbjct: 259 TQQQQDVIRLRYGLEDGKPLTLSKIGDILSISRERVRQIEREALTKLR 306
>gi|81428494|ref|YP_395494.1| RNA polymerase sigma factor RpoD [Lactobacillus sakei subsp. sakei
23K]
gi|78610136|emb|CAI55185.1| DNA-directed RNA polymerase sigma factor, sigma A (Primary sigma
factor) [Lactobacillus sakei subsp. sakei 23K]
Length = 369
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDH +G+KFSTY +W
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDHRKGFKFSTYATWW 191
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI ++ ++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMNTDKV 251
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP+E + +K+ + +L++L R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTLTDR 311
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
>gi|421713585|ref|ZP_16152916.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R32b]
gi|407216951|gb|EKE86788.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R32b]
Length = 675
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 436 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 495
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 496 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 555
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 556 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 615
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 616 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 673
>gi|420402831|ref|ZP_14902019.1| RNA polymerase sigma factor [Helicobacter pylori CPY6081]
gi|393016298|gb|EJB17458.1| RNA polymerase sigma factor [Helicobacter pylori CPY6081]
Length = 671
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 432 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 491
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 492 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 551
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 552 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 611
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 612 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 669
>gi|308182264|ref|YP_003926391.1| RNA polymerase sigma factor RpoD [Helicobacter pylori PeCan4]
gi|308064449|gb|ADO06341.1| RNA polymerase sigma factor RpoD [Helicobacter pylori PeCan4]
Length = 682
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 443 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 502
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 503 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 562
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 563 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 622
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 623 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 680
>gi|384888744|ref|YP_005763046.1| RNA polymerase sigma factor RpoD [Helicobacter pylori v225d]
gi|297379310|gb|ADI34197.1| RNA polymerase sigma factor RpoD [Helicobacter pylori v225d]
Length = 677
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 438 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 497
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 498 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 557
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 558 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 617
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 618 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 675
>gi|385224783|ref|YP_005784708.1| DNA-directed RNA polymerase sigma subunit RpoD [Helicobacter pylori
83]
gi|332672929|gb|AEE69746.1| DNA-directed RNA polymerase sigma subunit RpoD [Helicobacter pylori
83]
Length = 674
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 435 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 494
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 495 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 554
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 555 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 614
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 615 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 672
>gi|384892085|ref|YP_005766178.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Cuz20]
gi|308061382|gb|ADO03270.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Cuz20]
Length = 672
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 433 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 492
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 493 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 552
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 553 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 612
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 613 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 670
>gi|302335781|ref|YP_003800988.1| RNA polymerase sigma-70 subunit RpoD [Olsenella uli DSM 7084]
gi|301319621|gb|ADK68108.1| RNA polymerase, sigma 70 subunit, RpoD [Olsenella uli DSM 7084]
Length = 453
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 157/278 (56%), Gaps = 6/278 (2%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAG------VSERVLKQHLAFGWYCREELIK 302
V ++ E + ++ E+G A+ A G +R L + G ++ LI
Sbjct: 162 VDLLTASEEVHLAMKIEAGTEATERLEAADRGEIELTRAEQRRLMRIEQVGLEAKQALIS 221
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ L + +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 222 ANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 281
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
+A AR I+IP + I+K+ + ++ L G+ P EI G+S +R +
Sbjct: 282 AIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPTPEEIGAEMGISADRVREIQKIS 341
Query: 423 RIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVL 482
+ S++ IG+ ++ +F D S +P E +++ + ++L+SL RER+V+
Sbjct: 342 QEPVSLETPIGEEEDSSLGDFIEDSSAVAPPEAASDSMLREQLEQVLDSLADRERKVIKF 401
Query: 483 RYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
R+GL D P++LEE+G+ F V++E IR++E K + KLR
Sbjct: 402 RFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLR 439
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 173/293 (59%), Gaps = 1/293 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ LE E G+ + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +S+ ++R +
Sbjct: 217 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPNEAEMAEALEISVQQLRQLQQL 276
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D SP+ + M+++++ +L + L RE+ V+
Sbjct: 277 RRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVLTPREKDVI 336
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 337 SLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 389
>gi|333998570|ref|YP_004531182.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-2]
gi|333740999|gb|AEF86489.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-2]
Length = 295
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 142/239 (59%), Gaps = 1/239 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++I++ LV+F+A+ YR G+ S+L+Q GN+G+++ E+FD+ +G++FS Y +W
Sbjct: 57 AKDKMIRANLRLVVFMAKKYRNCGLSLSELVQEGNIGLMRAVEKFDYRKGFRFSAYAGWW 116
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I + +K +A R I++P + I+K++K L G+ PED EIA++ G + ++
Sbjct: 117 IYQGFTKAIAEKTRTIRLPSHVITRINKMKKGSSQLQEFLGRNPEDEEIAEHLGWTSKQL 176
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYL-EFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
R R S D IGD A L +F D V P + +R +K+D++ L +L +
Sbjct: 177 RVVKGFSRDAVSFDTPIGDEEGAGSLIDFIEDEKVSDPADTAIRTFLKEDLYTALSTLPA 236
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
RE++VL LR+GLND P SL+E+GK +S+E IR++E + LR R L +++
Sbjct: 237 REQRVLELRFGLNDGCPLSLKEVGKREGLSRERIRQIEGMGLRHLRQPHRSRKLKAYIL 295
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 157/267 (58%), Gaps = 17/267 (6%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+ A +S L Q + G +E +I++ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 162 AWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 221
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ L+
Sbjct: 222 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 281
Query: 394 SHGKYPEDIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCLNAKYLEFAP 445
S G+ +IA+ ++ +I RS S +++ D ++GD L +
Sbjct: 282 SKGRTASIEDIAQEMDMTPEQIRELLVRVPRSVSLEIKVGKDKDTELGDLLETDDI---- 337
Query: 446 DRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSK 505
SP+E++MR+ +++++ ++L L RER V+ +R+GLND + SL +IGK +S+
Sbjct: 338 -----SPEELIMRESLQQELKQLLADLTPRERDVITMRFGLNDGKTHSLAQIGKSLDLSR 392
Query: 506 EWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +R++E KA+ KLR + + FL
Sbjct: 393 ERVRQIESKALQKLRQPKRRNRIRDFL 419
>gi|253580849|ref|ZP_04858112.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847919|gb|EES75886.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 375
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 149 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 208
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK +S+ +R + +
Sbjct: 209 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMDMSVERVREILKISQEPV 268
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D +V P + +K+ + +L +L RE++VL LR+GL
Sbjct: 269 SLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLSTLTDREQKVLRLRFGL 328
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK F+V++E IR++E KA+ KLR R L +L
Sbjct: 329 DDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 374
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 172/308 (55%), Gaps = 25/308 (8%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWA-------QAAG 280
L GR + R+E +++ VQ L ++ L+KE G+ +L WA + A
Sbjct: 50 LQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWAN 109
Query: 281 VSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
++ L+Q G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+F
Sbjct: 110 LTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKF 169
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D +GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ L+ G+ P
Sbjct: 170 DPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPT 229
Query: 401 DIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
+IA +++ ++ RS S ++ D ++GD L + SP
Sbjct: 230 IEDIASELEMTVPQVRELLVRVPRSVSLETKVGKDKDTELGDLLETDDI---------SP 280
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
+E +MR+ + +D+ ++L L SRER V+ +R+GL D R SL EIG+ +S+E +R++E
Sbjct: 281 EETMMREALHRDLQQLLADLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIE 340
Query: 513 KKAMTKLR 520
KA+ KLR
Sbjct: 341 AKALQKLR 348
>gi|421716149|ref|ZP_16155461.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R037c]
gi|407222047|gb|EKE91850.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R037c]
Length = 676
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 437 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 496
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 497 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 556
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 557 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 616
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 617 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 674
>gi|420474969|ref|ZP_14973640.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-21]
gi|393093076|gb|EJB93693.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-21]
Length = 680
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 441 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 500
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 501 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 560
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 561 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 620
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 621 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 678
>gi|420398155|ref|ZP_14897368.1| RNA polymerase sigma factor [Helicobacter pylori CPY1962]
gi|393014829|gb|EJB16000.1| RNA polymerase sigma factor [Helicobacter pylori CPY1962]
Length = 677
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 438 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 497
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 498 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 557
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 558 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 617
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 618 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 675
>gi|295839080|ref|ZP_06826013.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|295827312|gb|EDY44634.2| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 360
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 143/250 (57%), Gaps = 6/250 (2%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L + + G + LI+S LV+ +A+ Y G G+ DL+Q GN+G+++ E+FD+TRG
Sbjct: 113 LDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIRAVEKFDYTRG 172
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+++S+ +A AR I++P + I+++ +AR+ L G P D E+A
Sbjct: 173 FKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRARRTLLQERGHEPCDAEVA 232
Query: 406 KYTGLSLAEIRSASECLRIVG---SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
GL+ + E LR+ S+ +G + D SP E ++
Sbjct: 233 AVLGLTPERV---GEVLRLAQEPVSLHTPVGGEDEVALGDLIEDGDAPSPPESAALLLLR 289
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+ + +L +L RERQV+ LRYGL+D RP++LEEIG LF V++E IR++E K + KLR
Sbjct: 290 RHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSH 349
Query: 523 ETCRDLSHFL 532
L +L
Sbjct: 350 VFADQLRGYL 359
>gi|384887129|ref|YP_005761640.1| sigma 70 (RpoD) [Helicobacter pylori 52]
gi|261838959|gb|ACX98724.1| sigma 70 (RpoD) [Helicobacter pylori 52]
Length = 685
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 446 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 505
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 506 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 565
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 566 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 625
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 626 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 683
>gi|359419328|ref|ZP_09211286.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
gi|358244735|dbj|GAB09355.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
Length = 508
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 149/249 (59%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L++ G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 259 RALREVAYDGTKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 318
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 319 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 378
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+AK ++ ++ + R S+DQ IGD +++ +F D + V ++
Sbjct: 379 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAIVAVDAVSFTLLQD 438
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 439 QLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS 498
Query: 524 TCRDLSHFL 532
+ L +L
Sbjct: 499 RSQVLRDYL 507
>gi|224542125|ref|ZP_03682664.1| hypothetical protein CATMIT_01300 [Catenibacterium mitsuokai DSM
15897]
gi|224524962|gb|EEF94067.1| RNA polymerase sigma factor RpoD [Catenibacterium mitsuokai DSM
15897]
Length = 418
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +W
Sbjct: 179 AKKELAAANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYTKGFKFSTYATWW 238
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA-KYTGLSLAE 414
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIA K G++ A+
Sbjct: 239 IRQAITRAIADQARTIRIPVHMVETINKLTRIQRQLVQELGREPTAEEIAEKMDGMTPAK 298
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + S++ IG+ ++ +F D SP + + +K ++ +L L
Sbjct: 299 VREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGAMSPDDYASNELLKDELNEVLLELTD 358
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE +VL LR+GL+D R ++LEE+GK F+V++E IR++E KA+ KL+ + L FL
Sbjct: 359 REEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPSRSKRLKDFL 416
>gi|333991084|ref|YP_004523698.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487052|gb|AEF36444.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 512
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 147/247 (59%), Gaps = 6/247 (2%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 265 MAWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 324
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 325 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 384
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
+ ++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 385 REMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 444
Query: 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 445 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 504
Query: 526 RDLSHFL 532
+ L +L
Sbjct: 505 QVLRDYL 511
>gi|420406222|ref|ZP_14905393.1| RNA polymerase sigma factor [Helicobacter pylori CPY6311]
gi|393024243|gb|EJB25354.1| RNA polymerase sigma factor [Helicobacter pylori CPY6311]
Length = 675
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 436 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 495
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 496 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 555
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 556 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 615
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 616 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 673
>gi|420406052|ref|ZP_14905225.1| RNA polymerase sigma factor [Helicobacter pylori CPY6271]
gi|393021871|gb|EJB23001.1| RNA polymerase sigma factor [Helicobacter pylori CPY6271]
Length = 676
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 437 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 496
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 497 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 556
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 557 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 616
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 617 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 674
>gi|420454635|ref|ZP_14953465.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-14]
gi|393072985|gb|EJB73759.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-14]
Length = 679
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 440 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 499
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 500 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 559
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 560 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 619
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 620 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 677
>gi|385215367|ref|YP_005775323.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F32]
gi|317179895|dbj|BAJ57681.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F32]
Length = 671
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 432 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 491
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 492 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 551
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 552 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 611
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 612 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 669
>gi|208434051|ref|YP_002265717.1| RNA polymerase sigma factor RpoD [Helicobacter pylori G27]
gi|208431980|gb|ACI26851.1| RNA polymerase sigma-80 factor [Helicobacter pylori G27]
Length = 682
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 443 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 502
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 503 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 562
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 563 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 622
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 623 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 680
>gi|354807988|ref|ZP_09041435.1| RNA polymerase sigma factor rpoD [Lactobacillus curvatus CRL 705]
gi|354513521|gb|EHE85521.1| RNA polymerase sigma factor rpoD [Lactobacillus curvatus CRL 705]
Length = 369
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDH +G+KFSTY +W
Sbjct: 132 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDHRKGFKFSTYATWW 191
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI ++ ++
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMNTDKV 251
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP+E + +K+ + +L++L R
Sbjct: 252 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTLTDR 311
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 312 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
>gi|385226359|ref|YP_005786283.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SNT49]
gi|344331272|gb|AEN16302.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SNT49]
Length = 670
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 431 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 490
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 491 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 550
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 551 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 610
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 611 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 668
>gi|283954552|ref|ZP_06372071.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 414]
gi|283793956|gb|EFC32706.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 414]
Length = 622
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 146/234 (62%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK LS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVSLSMDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ IG+ + K+ +F DR+ SP + +++ +K+ + +L L+ RE+ V
Sbjct: 505 KITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLNQLNDREKAV 564
Query: 480 LVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL +D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 618
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 169/301 (56%), Gaps = 30/301 (9%)
Query: 247 KGVQVVANLER---IKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG---W------ 294
+G V+ +R ++ L E G SL WA+ AG+ LK L G W
Sbjct: 104 QGDTVIVPYQRLIEVQERLSSELGHRPSLERWAKTAGIDLADLKPTLLEGKRRWAEIAKL 163
Query: 295 -------------YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
+E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD
Sbjct: 164 KVEELENVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFD 223
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++ G+ P
Sbjct: 224 PTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTL 283
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSI--DQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
++A ++ ++R LR+ S+ + K+G + + E S+ +P+E++MR+
Sbjct: 284 EDLAIELDMTPTQVREV--LLRVPRSVSLETKVGKDKDTELGELLETDSI-TPEEMLMRE 340
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
++KD+ +L L SRER V+++R+GL+D P SL EIG+ +S+E +R++E KA+ KL
Sbjct: 341 SLQKDLHHLLADLTSRERDVILMRFGLSDGHPYSLAEIGRALDLSRERVRQIESKALQKL 400
Query: 520 R 520
R
Sbjct: 401 R 401
>gi|210134292|ref|YP_002300731.1| RNA polymerase sigma factor RpoD [Helicobacter pylori P12]
gi|210132260|gb|ACJ07251.1| RNA polymerase sigma-80 factor [Helicobacter pylori P12]
Length = 680
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 441 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 500
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 501 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 560
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 561 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 620
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 621 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 678
>gi|387907461|ref|YP_006337795.1| RNA polymerase sigma factor RpoD [Helicobacter pylori XZ274]
gi|387572396|gb|AFJ81104.1| RNA polymerase sigma factor RpoD [Helicobacter pylori XZ274]
Length = 666
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 427 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 486
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 487 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 546
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 547 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 606
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 607 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 664
>gi|420403236|ref|ZP_14902422.1| RNA polymerase sigma factor [Helicobacter pylori CPY6261]
gi|393020402|gb|EJB21541.1| RNA polymerase sigma factor [Helicobacter pylori CPY6261]
Length = 671
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 432 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 491
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 492 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 551
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 552 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNER 611
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 612 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILKNYL 669
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 168/301 (55%), Gaps = 30/301 (9%)
Query: 247 KGVQVVANLERI---KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG---W------ 294
+G +++A RI + L E G S+ WA AGV LKQ LA G W
Sbjct: 129 QGDEIIAPYLRIIEAQERLASELGHRPSMERWASTAGVDVFELKQILAKGKRRWAEVAKL 188
Query: 295 -------------YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
+E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD
Sbjct: 189 TVEELEQMQSSGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFD 248
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ + G+ P
Sbjct: 249 PTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTL 308
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSI--DQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
++A ++ +R LR+ S+ + K+G + + E SV +P+E++MR+
Sbjct: 309 EDLAVELEMTPTAVREV--LLRVPRSVSLETKVGKDKDTELGELLETDSV-TPEEMLMRE 365
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
+++D+ +L L +RER V+++R+GL D P SL EIG+ +S+E +R++E KA+ KL
Sbjct: 366 SLQRDLHHLLSDLTTRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKL 425
Query: 520 R 520
R
Sbjct: 426 R 426
>gi|420466404|ref|ZP_14965161.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-9]
gi|393084802|gb|EJB85490.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-9]
Length = 679
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 440 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 499
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 500 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 559
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 560 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 619
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 620 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 677
>gi|384893697|ref|YP_005767746.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Sat464]
gi|308062951|gb|ADO04838.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Sat464]
Length = 666
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 427 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 486
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 487 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 546
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 547 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 606
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 607 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 664
>gi|387781786|ref|YP_005792499.1| transcription initiation factor sigma-80 [Helicobacter pylori 51]
gi|261837545|gb|ACX97311.1| transcription initiation factor sigma-80 [Helicobacter pylori 51]
Length = 684
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 445 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 504
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 505 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 564
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 565 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 624
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 625 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 682
>gi|420525776|ref|ZP_15024179.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-15b]
gi|393133797|gb|EJC34213.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-15b]
Length = 679
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 151/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 440 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 499
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + GK P+ +A+ GLSL ++
Sbjct: 500 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKV 559
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + IL+ L+ R
Sbjct: 560 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESILDQLNER 619
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 620 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 677
>gi|386750522|ref|YP_006223742.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi417]
gi|384556780|gb|AFH97248.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi417]
Length = 666
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 427 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 486
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 487 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 546
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 547 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 606
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 607 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 664
>gi|239626722|ref|ZP_04669753.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516868|gb|EEQ56734.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 374
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 144/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ L +S LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +W
Sbjct: 136 ARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+++ + + L G+ P EIA L + +
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARADLPVERV 255
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ + S++ IG+ ++ +F D +V P++ + + + +L +L R
Sbjct: 256 SEIMKMAQEPVSLETPIGEEEDSHLGDFIQDDNVMVPQDAAAFTLLHEQLMEVLLTLTER 315
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL+D RP++LEE+G+ F+V++E IR++E KA+ KLR + L +L
Sbjct: 316 EQKVLKLRFGLDDGRPRTLEEVGRQFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 372
>gi|152993293|ref|YP_001359014.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. NBC37-1]
gi|151425154|dbj|BAF72657.1| RNA polymerase sigma 70 factor [Sulfurovum sp. NBC37-1]
Length = 612
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 151/248 (60%), Gaps = 1/248 (0%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
++Q A + + KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +G
Sbjct: 363 IRQGKAKSEVAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYEKG 422
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++IS+ +A AR I+IP + I++I K + GK P+ IA
Sbjct: 423 YKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKHLQETGKEPDLETIA 482
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDV 465
K GL++ ++++ + + S++ +GD + ++ +F D++ SP + V++ + +
Sbjct: 483 KEVGLTVDKVKNVIKITKEPVSLETPVGDEDDGRFGDFIEDKTTLSPTDAVLKDDLNNQI 542
Query: 466 FRILESLDSRERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524
+L+ L+ RE+ V+ +R+G L D ++LEEIGK +V++E +R++E A+ KL+ +
Sbjct: 543 DEVLDQLNEREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKV 602
Query: 525 CRDLSHFL 532
R L +++
Sbjct: 603 GRKLKNYI 610
>gi|300784474|ref|YP_003764765.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|399536359|ref|YP_006549021.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
gi|299793988|gb|ADJ44363.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|398317129|gb|AFO76076.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
Length = 343
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 143/231 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+++G+KFSTY
Sbjct: 103 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 162
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ E+A +G+
Sbjct: 163 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 222
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 223 HKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 282
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D RE+ V+ LRYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E
Sbjct: 283 DDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGE 333
>gi|418747116|ref|ZP_13303426.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
CBC379]
gi|418752464|ref|ZP_13308725.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
MOR084]
gi|421110278|ref|ZP_15570779.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. JET]
gi|409967194|gb|EKO35030.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
MOR084]
gi|410791910|gb|EKR89855.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
CBC379]
gi|410804463|gb|EKS10580.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. JET]
gi|456876656|gb|EMF91735.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. ST188]
Length = 586
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 299 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 351
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 352 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 411
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 412 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 471
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 472 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 531
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 532 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 584
>gi|337748350|ref|YP_004642512.1| protein SigA [Paenibacillus mucilaginosus KNP414]
gi|379723267|ref|YP_005315398.1| protein SigA [Paenibacillus mucilaginosus 3016]
gi|386725990|ref|YP_006192316.1| protein SigA [Paenibacillus mucilaginosus K02]
gi|336299539|gb|AEI42642.1| SigA [Paenibacillus mucilaginosus KNP414]
gi|378571939|gb|AFC32249.1| SigA [Paenibacillus mucilaginosus 3016]
gi|384093115|gb|AFH64551.1| protein SigA [Paenibacillus mucilaginosus K02]
Length = 378
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+GYKFSTY +WIR++I++ +A
Sbjct: 152 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWWIRQAITRAIAD 211
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK LS ++R + +
Sbjct: 212 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMDLSTDKVREIMKIAQEPV 271
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P + + +K+ + +L++L RE VL LR+GL
Sbjct: 272 SLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGL 331
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 332 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 377
>gi|385216860|ref|YP_005778336.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F16]
gi|317176909|dbj|BAJ54698.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F16]
Length = 671
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 432 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 491
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 492 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 551
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 552 KNVIKVAKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDRIMREDLKAQIESVLDQLNER 611
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 612 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 669
>gi|384899577|ref|YP_005774957.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F30]
gi|317179521|dbj|BAJ57309.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F30]
Length = 666
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 427 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 486
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 487 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 546
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 547 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 606
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 607 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 664
>gi|410450654|ref|ZP_11304688.1| RNA polymerase sigma factor RpoD [Leptospira sp. Fiocruz LV3954]
gi|410015532|gb|EKO77630.1| RNA polymerase sigma factor RpoD [Leptospira sp. Fiocruz LV3954]
Length = 579
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 292 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 344
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 345 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 404
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 405 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 464
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 465 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 524
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 525 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 577
>gi|398306978|ref|ZP_10510564.1| RNA polymerase sigma factor RpoD [Bacillus vallismortis DV1-F-3]
Length = 371
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 150/253 (59%), Gaps = 7/253 (2%)
Query: 287 KQHLAFGWYCRE-------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
K+ +AF E L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 118 KEEIAFAQKIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEK 177
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+ +GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 178 FDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREP 237
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQ 459
EIA+ L+ ++R + + S++ IG+ ++ +F D+ SP + +
Sbjct: 238 TPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYE 297
Query: 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519
+K+ + +L++L RE VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KL
Sbjct: 298 LLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 357
Query: 520 RDSETCRDLSHFL 532
R + L FL
Sbjct: 358 RHPSRSKRLKDFL 370
>gi|302525710|ref|ZP_07278052.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434605|gb|EFL06421.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 317
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 143/231 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+++G+KFSTY
Sbjct: 77 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 136
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + R+ L G+ E++ +G+ +
Sbjct: 137 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIRRDLHQQLGRDATHEELSAESGIPV 196
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 197 HKISDLLDQSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 256
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D RE+ V+ LRYGL+D +P++L++IGK F +S+E +R++E++ M KLR E
Sbjct: 257 DDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMAKLRQGE 307
>gi|359685998|ref|ZP_09255999.1| RNA polymerase sigma-70 factor [Leptospira santarosai str.
2000030832]
gi|422004532|ref|ZP_16351749.1| RNA polymerase sigma-70 factor [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417256834|gb|EKT86248.1| RNA polymerase sigma-70 factor [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 585
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|325107209|ref|YP_004268277.1| RNA polymerase sigma-70 subunit RpoD [Planctomyces brasiliensis DSM
5305]
gi|324967477|gb|ADY58255.1| RNA polymerase, sigma 70 subunit, RpoD [Planctomyces brasiliensis
DSM 5305]
Length = 590
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFSTY +WIR++I++ +A
Sbjct: 354 LVVSIAKKYRNRGMNFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIAD 413
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + +SK++K K L G+ P E+A+ +SL E R + R
Sbjct: 414 QARTIRIPVHMIETMSKLRKVGKDLVQELGREPTIEEMAEAAEVSLEEARRVMKISRQPI 473
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D+ IG+ ++ + +F D S SP ++ +K + +L++L RER+++ LRYGL
Sbjct: 474 SLDRPIGEGEDSYFGDFIEDHSTDSPVSTATQEMLKDKIDHVLKTLTYREREIIKLRYGL 533
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
D +LEE+G++F V++E +R++E KA+ KL+ L F+
Sbjct: 534 GDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSHQLKGFI 579
>gi|417764155|ref|ZP_12412127.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400353669|gb|EJP05831.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bulgarica str. Mallika]
Length = 585
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 156/274 (56%), Gaps = 1/274 (0%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L KE SL+ WA SE L + G ++++I++
Sbjct: 43 KQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQSETELNHLMVQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPTEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S+D ++G+ + + E D SP+ ++ ++ D+ +L L ++RQV+ LR+GL
Sbjct: 223 SLDVRVGENQDTELQEMLEDDG-PSPEYYTTQEFLRHDLNNLLAELTPQQRQVVALRFGL 281
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 282 EDGNELSLAKVGERLNLSRERVRQLEHQALAHLR 315
>gi|420444722|ref|ZP_14943639.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-42]
gi|393064342|gb|EJB65181.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-42]
Length = 681
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 151/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 442 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 501
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + GK P+ +A+ GLSL ++
Sbjct: 502 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKV 561
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 562 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 621
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 622 EKAVICMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 679
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 150/252 (59%), Gaps = 1/252 (0%)
Query: 282 SERV-LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
S+R+ LK+H+ G R+ LI++ LV+ +A+ Y G+ DL+Q GN+G+++ E+F
Sbjct: 134 SDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKF 193
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+G+KFSTY +WIR++I++ +A +R I++P + IS++++ L + + P
Sbjct: 194 DYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPT 253
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQH 460
EIA+ G++ +++R E S++ +G + +F D V +P +
Sbjct: 254 PEEIAEAMGITASKVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRVSTPVDAAAMTM 313
Query: 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+++ + +L+ L RER+++ LRYGL D R ++LEE+G F +++E IR++E A+ KLR
Sbjct: 314 LREQIEEVLQKLPERERKIIQLRYGLKDGRYRTLEEVGLEFGITRERIRQIEAVALRKLR 373
Query: 521 DSETCRDLSHFL 532
+ L +L
Sbjct: 374 HPHLGKKLRGYL 385
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 148/250 (59%), Gaps = 6/250 (2%)
Query: 289 HLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
H W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 278 HRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 337
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 338 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 397
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
E+AK ++ ++ + R S+DQ IGD +++ +F D + V ++
Sbjct: 398 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 457
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+ +L++L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR
Sbjct: 458 DQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 517
Query: 523 ETCRDLSHFL 532
+ L +L
Sbjct: 518 SRSQVLRDYL 527
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 168/315 (53%), Gaps = 14/315 (4%)
Query: 219 QPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQ 277
+PT + + L GR L A E E+S ERI+ E E L Q
Sbjct: 44 EPTPDAVQHYLQEIGRVSLLTANEEVELS---------ERIERGDEAEE----RLATEDQ 90
Query: 278 AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
+G R L+ + G R LI++ LV+ +A+ Y G G+ DL+Q GN+G+++
Sbjct: 91 LSGTQRRNLEHEVERGNDARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAV 150
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
E+FDH +G +FSTY +WIR+++++ +A R I++P ++ +S++++ + L+ S +
Sbjct: 151 EKFDHRKGNRFSTYATWWIRQAVTRSIAEQGRTIRLPVHMSESVSQVKRTSERLSQSLER 210
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVM 457
P EIA G I E R S++ +GD +F PD + +P +
Sbjct: 211 QPSAEEIAIALGQPTERIERVLEAARRPVSLETPVGDEGEHTLGDFLPDDDLPTPGDFAS 270
Query: 458 RQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMT 517
Q +++D+ L+ L+ RER+++ LRYGL D R ++LEE+G+ +++E R++E +A+
Sbjct: 271 AQLLRQDLCAALDHLNERERRIIDLRYGLLDGRRRTLEEVGRTLGMTRERARQIEAEALR 330
Query: 518 KLRDSETCRDLSHFL 532
+LR + + L +L
Sbjct: 331 RLRSPDVGQHLRDYL 345
>gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308373480|ref|ZP_07667590.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
gi|308214639|gb|EFO74038.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308337452|gb|EFP26303.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
Length = 413
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 168 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 227
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 228 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 287
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 288 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 347
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L++L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 348 VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 407
Query: 528 LSHFL 532
L +L
Sbjct: 408 LRDYL 412
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 179/300 (59%), Gaps = 5/300 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G QV + L+ I+ L ++ + + W+ AA +SE L++ L
Sbjct: 20 RVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+K ++ L+ G+ E+A L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATSLDLTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++R E R S+D ++GD + + E D S +SP+ ++ ++ D+ R++ L
Sbjct: 200 KQVREYLERARQPLSLDVRVGDNQDTELGELIEDPS-ESPENFTLQASLRGDLERLMADL 258
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+++QVL LR+GL+D +P +L +IG +S+E +R++E++A++KLR + D+S +L
Sbjct: 259 TDQQQQVLHLRFGLDDGQPLTLAKIGDRLSISRERVRQIEREALSKLRKRKA--DISEYL 316
>gi|386753598|ref|YP_006226816.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi112]
gi|384559856|gb|AFI00323.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi112]
Length = 672
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 433 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 492
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 493 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 552
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 553 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNER 612
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 613 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 670
>gi|375090808|ref|ZP_09737120.1| RNA polymerase sigma factor rpoD [Facklamia languida CCUG 37842]
gi|374564970|gb|EHR36249.1| RNA polymerase sigma factor rpoD [Facklamia languida CCUG 37842]
Length = 379
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 143/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY +W
Sbjct: 142 AKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDHTKGFKFSTYATWW 201
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI L ++
Sbjct: 202 IRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGREPTPEEIGAEMDLPTEKV 261
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D SP++ +++ + +L++L R
Sbjct: 262 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDDGALSPEDFTASALLREQLEDVLDTLTDR 321
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D ++LE++GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 322 EENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 378
>gi|237751866|ref|ZP_04582346.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor RpoD [Helicobacter
winghamensis ATCC BAA-430]
gi|229376742|gb|EEO26833.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor RpoD [Helicobacter
winghamensis ATCC BAA-430]
Length = 615
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 149/237 (62%), Gaps = 1/237 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GY+FSTY +W
Sbjct: 379 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYRFSTYATWW 438
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + GK P+ +IA+ GL L ++
Sbjct: 439 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKCLQEEGKEPDLEKIAEEVGLPLDKV 498
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ IG+ + K+ +F D+S P + ++++ +K + +L+ L+ R
Sbjct: 499 KNVIKITKEPISLEAPIGNGEDGKFGDFVEDKSAVGPMDHILKEDLKSQIDDVLDQLNER 558
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KL+ + R L ++
Sbjct: 559 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNY 615
>gi|296127158|ref|YP_003634410.1| RpoD subfamily RNA polymerase sigma-70 subunit [Brachyspira
murdochii DSM 12563]
gi|296018974|gb|ADG72211.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Brachyspira
murdochii DSM 12563]
Length = 587
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ ++K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +W
Sbjct: 349 AKDHIVKANLRLVIAIAKKYVNRGLHFFDLVQEGNIGLIKAVDKFEYKKGYKFSTYATWW 408
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ ++ AR I++P + +I+K+Q+ + HG+ P EIAK G + +
Sbjct: 409 IRQAITRSISDQARTIRVPVHMIEQINKVQRVLRQYMQQHGREPSIQEIAKALGWPESRV 468
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+S + S++ IGD + E D+ +SP+ I + ++K + IL+SL R
Sbjct: 469 KSVRNVAKDPVSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILRKQIDSILDSLPDR 528
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++V+ +R+GL D +LEE+G +F V++E IR++E KA+ +LR ++L FL
Sbjct: 529 EQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLRAQSKKKELKDFL 585
>gi|24214932|ref|NP_712413.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. 56601]
gi|45657567|ref|YP_001653.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074282|ref|YP_005988599.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. IPAV]
gi|417761074|ref|ZP_12409088.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000624]
gi|417768940|ref|ZP_12416862.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417773531|ref|ZP_12421408.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000621]
gi|417782997|ref|ZP_12430720.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
C10069]
gi|418667800|ref|ZP_13229205.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418672640|ref|ZP_13233976.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000623]
gi|418692659|ref|ZP_13253737.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
FPW2026]
gi|418701583|ref|ZP_13262507.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418703527|ref|ZP_13264411.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418710902|ref|ZP_13271668.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717863|ref|ZP_13277402.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
08452]
gi|418726272|ref|ZP_13284883.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12621]
gi|418733427|ref|ZP_13290551.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12758]
gi|421086235|ref|ZP_15547086.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
HAI1594]
gi|421118518|ref|ZP_15578855.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421121172|ref|ZP_15581471.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. Brem
329]
gi|421124053|ref|ZP_15584323.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421134692|ref|ZP_15594825.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|26399555|sp|P59117.1|RPOD_LEPIN RecName: Full=RNA polymerase sigma factor RpoD
gi|47605974|sp|P61540.1|RPOD_LEPIC RecName: Full=RNA polymerase sigma factor RpoD
gi|24195965|gb|AAN49431.1|AE011394_5 RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. 56601]
gi|45600806|gb|AAS70290.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458071|gb|AER02616.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. IPAV]
gi|400357892|gb|EJP14012.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
FPW2026]
gi|409943068|gb|EKN88671.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000624]
gi|409949090|gb|EKN99072.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409953698|gb|EKO08194.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
C10069]
gi|409960182|gb|EKO23936.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12621]
gi|410009877|gb|EKO68031.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410021276|gb|EKO88068.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410346000|gb|EKO97044.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. Brem
329]
gi|410431800|gb|EKP76160.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
HAI1594]
gi|410438540|gb|EKP87626.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410576619|gb|EKQ39624.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000621]
gi|410580328|gb|EKQ48153.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000623]
gi|410756245|gb|EKR17870.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410759368|gb|EKR25581.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410766663|gb|EKR37346.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410768502|gb|EKR43749.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410773036|gb|EKR53067.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12758]
gi|410786736|gb|EKR80474.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
08452]
gi|455792672|gb|EMF44412.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Lora str. TE 1992]
gi|456821632|gb|EMF70138.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 585
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|418681199|ref|ZP_13242432.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400327020|gb|EJO79276.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|455666955|gb|EMF32326.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|398339101|ref|ZP_10523804.1| RNA polymerase sigma-70 factor [Leptospira kirschneri serovar Bim
str. 1051]
gi|418677117|ref|ZP_13238395.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688253|ref|ZP_13249409.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418739874|ref|ZP_13296255.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090834|ref|ZP_15551624.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
200802841]
gi|421106512|ref|ZP_15567079.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H2]
gi|421132400|ref|ZP_15592568.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
2008720114]
gi|400323017|gb|EJO70873.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410000420|gb|EKO51050.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
200802841]
gi|410008439|gb|EKO62109.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H2]
gi|410356165|gb|EKP03522.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
2008720114]
gi|410737110|gb|EKQ81852.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410752996|gb|EKR09968.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|375092093|ref|ZP_09738378.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
gi|374561859|gb|EHR33196.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
Length = 675
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 146/237 (61%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
+ LK+ G + +L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 424 KYLKKKYRIGKAAKGKLAETNLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVEKFDYK 483
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RG+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P + E
Sbjct: 484 RGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELGRTPTNEE 543
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
IAK + + ++R + + S++ IG+ ++ +F D +P E + +K+
Sbjct: 544 IAKEMNIDVDKVREVRKIAQEPVSLEAPIGEEDDSHLGDFIEDERALAPDEAANQTMLKE 603
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+ IL SL RE++V+ LR+GL D PK+LE++GK F V++E IR++E KA+ KL+
Sbjct: 604 QLEDILSSLSEREKRVIELRFGLIDGVPKTLEDVGKEFDVTRERIRQIEAKAIRKLK 660
>gi|210620870|ref|ZP_03292287.1| hypothetical protein CLOHIR_00230 [Clostridium hiranonis DSM 13275]
gi|210155082|gb|EEA86088.1| hypothetical protein CLOHIR_00230 [Clostridium hiranonis DSM 13275]
Length = 388
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 151 AKQRLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYEKGFKFSTYATWW 210
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ + EIAK LS+ ++
Sbjct: 211 IRQAITRAIADQARTIRIPVHMVETINKLMRVSRQLLQELGRDAKPEEIAKEMDLSVEKV 270
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F PD +P +K+ + +L SL+ R
Sbjct: 271 REIMKIAQDPVSLETPIGEEEDSHLGDFIPDDDAPAPDISAAYSLLKEQIDEVLGSLNER 330
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E++VL LR+GL D R ++LEE+GK F V++E IR++E KA+ KLR + L +L
Sbjct: 331 EQKVLKLRFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 387
>gi|406880023|gb|EKD28466.1| hypothetical protein ACD_79C00291G0001 [uncultured bacterium]
Length = 568
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 157/267 (58%), Gaps = 18/267 (6%)
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
KA ++ WA A R+ KQ E+I+S LV+ +A+ Y G+ F DL+Q
Sbjct: 305 KAEEIDKWATEA----RLAKQ----------EMIESNLRLVISIAKKYTNRGLSFLDLIQ 350
Query: 328 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKA 387
GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP + I+K+ +A
Sbjct: 351 EGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRA 410
Query: 388 RKALTNSHGK--YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAP 445
K L G+ PED +A + + +IRS + + S+ IG+ ++ + +F
Sbjct: 411 SKKLIQEKGREATPED--LADGMKIPVEKIRSILKMAQHPISLQAPIGEGEDSHFGDFIE 468
Query: 446 DRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSK 505
D+ SP ++ +K+ + +L +L RE++VL+LR+G+ D P++LEE+GK F V++
Sbjct: 469 DKGSDSPADLTGHSLLKEKMDDVLSTLTPREKKVLMLRFGVGDGTPRTLEEVGKEFAVTR 528
Query: 506 EWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +R++E KA+ K+R + L FL
Sbjct: 529 ERVRQIEAKALRKMRHPIRSKKLKGFL 555
>gi|312880428|ref|ZP_07740228.1| RNA polymerase, sigma 70 subunit, RpoD [Aminomonas paucivorans DSM
12260]
gi|310783719|gb|EFQ24117.1| RNA polymerase, sigma 70 subunit, RpoD [Aminomonas paucivorans DSM
12260]
Length = 387
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 140/233 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++
Sbjct: 154 LVEANLRLVVSIAKKYIGRGMLFLDLIQEGNLGLIRAVEKFDYRKGYKFSTYATWWIRQA 213
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I+IP + I+K+ + + L G+ P EIA + +
Sbjct: 214 ITRAIADQARTIRIPVHMVETINKLIRVSRQLVQRLGREPTAEEIAGEMEIPAERVEEIQ 273
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ S++ IG+ +++ +F D+ + SP+E Q +++ + +LE L RER+V
Sbjct: 274 RIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPEEAAASQILREQLEEMLEDLTDREREV 333
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
L LR+GL D P +LEE+G+ F V++E IR++E KA+ KLR + L FL
Sbjct: 334 LRLRFGLEDGHPHTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKLRDFL 386
>gi|116328273|ref|YP_797993.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116330997|ref|YP_800715.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
gi|116121017|gb|ABJ79060.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116124686|gb|ABJ75957.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNTAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|334133805|ref|ZP_08507347.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
gi|333608654|gb|EGL19944.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
Length = 374
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+GYKFSTY +WIR++I++ +A
Sbjct: 148 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWWIRQAITRAIAD 207
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK LS ++R + +
Sbjct: 208 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMELSTDKVREIMKIAQEPV 267
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P + + +K+ + +L++L RE VL LR+GL
Sbjct: 268 SLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGL 327
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 328 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|308174309|ref|YP_003921014.1| RpoD [Bacillus amyloliquefaciens DSM 7]
gi|384160167|ref|YP_005542240.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens TA208]
gi|384165097|ref|YP_005546476.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens LL3]
gi|384169236|ref|YP_005550614.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens XH7]
gi|307607173|emb|CBI43544.1| RpoD [Bacillus amyloliquefaciens DSM 7]
gi|328554255|gb|AEB24747.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens TA208]
gi|328912652|gb|AEB64248.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens LL3]
gi|341828515|gb|AEK89766.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens XH7]
Length = 373
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 147 LVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 206
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 207 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPV 266
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 267 SLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 326
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 327 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>gi|257056437|ref|YP_003134269.1| RNA polymerase sigma factor SigB [Saccharomonospora viridis DSM
43017]
gi|256586309|gb|ACU97442.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length = 342
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 145/239 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 102 GEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 161
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ E+A +G++
Sbjct: 162 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATHEELAAESGIAE 221
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ + R S+D +G +A +F D + + V+ ++ D+ R+L +L
Sbjct: 222 KKVADLLDHARDPVSLDMPVGADEDAPLGDFIEDSEAANAENSVISTLLQDDLRRVLATL 281
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
D RE V+ LRYGL+D +P++L++IGK F +S+E +R++E++ M KLR E L +
Sbjct: 282 DDREEHVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMAKLRHGERADKLRAY 340
>gi|384147741|ref|YP_005530557.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei S699]
gi|340525895|gb|AEK41100.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei S699]
Length = 317
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 143/231 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+++G+KFSTY
Sbjct: 77 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 136
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ E+A +G+
Sbjct: 137 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 196
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
+I + R S+D +G +A +F D + V+ ++ D+ R+L +L
Sbjct: 197 HKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATL 256
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D RE+ V+ LRYGL+D +P++L++IGK F +S+E +R++E++ M+KLR E
Sbjct: 257 DDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQGE 307
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 167/276 (60%), Gaps = 1/276 (0%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
++K VQ L+ IK L + + + WA AA ++E L + +A G +E+++++
Sbjct: 32 LAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAKITEEELHRAIAAGKAAKEKMVEAN 91
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +
Sbjct: 92 LRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAI 151
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
A +R I++P + +++KI+KA++ L+ + G+ E+A+ L+ ++R E R
Sbjct: 152 AEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAATISELAEELELTPRQVRDYLERARQ 211
Query: 425 VGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRY 484
S+D K+GD + + E D SP++ ++ D+ +++ L ++++VL LR+
Sbjct: 212 PLSLDLKVGDNQDTELGELLEDTGT-SPEDYATHSSLQVDLEKLMSDLTPQQKEVLALRF 270
Query: 485 GLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
GL D +P +L +IG ++S+E +R++E++A++KLR
Sbjct: 271 GLVDGQPLTLAKIGVRLNISRERVRQIEREALSKLR 306
>gi|418696549|ref|ZP_13257558.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H1]
gi|409956078|gb|EKO15010.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H1]
Length = 579
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 292 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 344
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 345 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 404
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 405 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 464
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 465 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 524
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 525 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 577
>gi|313897367|ref|ZP_07830910.1| RNA polymerase sigma factor RpoD [Clostridium sp. HGF2]
gi|346314492|ref|ZP_08856011.1| RNA polymerase sigma factor rpoD [Erysipelotrichaceae bacterium
2_2_44A]
gi|373121227|ref|ZP_09535095.1| RNA polymerase sigma factor RpoD [Erysipelotrichaceae bacterium
21_3]
gi|422327239|ref|ZP_16408266.1| RNA polymerase sigma factor RpoD [Erysipelotrichaceae bacterium
6_1_45]
gi|312957737|gb|EFR39362.1| RNA polymerase sigma factor RpoD [Clostridium sp. HGF2]
gi|345906227|gb|EGX75956.1| RNA polymerase sigma factor rpoD [Erysipelotrichaceae bacterium
2_2_44A]
gi|371663933|gb|EHO29117.1| RNA polymerase sigma factor RpoD [Erysipelotrichaceae bacterium
6_1_45]
gi|371665245|gb|EHO30410.1| RNA polymerase sigma factor RpoD [Erysipelotrichaceae bacterium
21_3]
Length = 398
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +W
Sbjct: 158 AKKKLISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFDYTKGFKFSTYATWW 217
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEI-AKYTGLSLAE 414
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI AK +S +
Sbjct: 218 IRQAITRAIADQARTIRIPVHMVETINKLTRIQRQLVQDLGRDPSAEEIAAKMENISPEK 277
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + S++ IG+ ++ +F D+ SP E Q +K ++ +L+ L
Sbjct: 278 VREIQKIALEPVSLETPIGEEDDSHLGDFIEDKEALSPDEYANNQLLKDEINTVLQGLTE 337
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE +VL LR+GL D R ++LEE+GK F+V++E IR++E KA+ KL+ + L F+
Sbjct: 338 REEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLKDFV 395
>gi|322379076|ref|ZP_08053479.1| RNA polymerase sigma factor RpoD [Helicobacter suis HS1]
gi|322379940|ref|ZP_08054217.1| RNA polymerase sigma factor RpoD [Helicobacter suis HS5]
gi|321147638|gb|EFX42261.1| RNA polymerase sigma factor RpoD [Helicobacter suis HS5]
gi|321148568|gb|EFX43065.1| RNA polymerase sigma factor RpoD [Helicobacter suis HS1]
Length = 634
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 147/238 (61%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ +S LV+ +A+ Y G+PF DL+Q GN+G+++ ++F+H + YKFSTY +W
Sbjct: 395 AKNKMARSNLRLVVSIAKRYTSRGLPFLDLIQEGNIGLMKAVDKFEHEKNYKFSTYATWW 454
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +AK GL L ++
Sbjct: 455 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKYMQENGKEPDLDLVAKEVGLPLDKV 514
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R+ + + S++ +G+ + K+ +F D++V E +MR+ +K + +L+ L+ R
Sbjct: 515 RNVIKITKEPISLESPVGNDDDGKFGDFVEDKNVVGSMEHIMREDLKAQIDGVLDQLNER 574
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L D ++LEEIGK +V++E +R++E A+ KLR + R L +L
Sbjct: 575 EKSVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYL 632
>gi|385248596|ref|YP_005776815.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F57]
gi|317181391|dbj|BAJ59175.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F57]
Length = 665
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 426 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 485
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 486 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 545
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 546 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNER 605
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 606 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 663
>gi|154686781|ref|YP_001421942.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens FZB42]
gi|375363053|ref|YP_005131092.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384266131|ref|YP_005421838.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385265518|ref|ZP_10043605.1| RNA polymerase sigma factor RpoD [Bacillus sp. 5B6]
gi|387899153|ref|YP_006329449.1| polymerase primary sigma factor [Bacillus amyloliquefaciens Y2]
gi|394992081|ref|ZP_10384874.1| RNA polymerase sigma factor RpoD [Bacillus sp. 916]
gi|421730962|ref|ZP_16170088.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505928|ref|YP_007187112.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346274|ref|YP_007444905.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens IT-45]
gi|452856284|ref|YP_007497967.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|154352632|gb|ABS74711.1| RpoD [Bacillus amyloliquefaciens FZB42]
gi|371569047|emb|CCF05897.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380499484|emb|CCG50522.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385150014|gb|EIF13951.1| RNA polymerase sigma factor RpoD [Bacillus sp. 5B6]
gi|387173263|gb|AFJ62724.1| polymerase primary sigma factor [Bacillus amyloliquefaciens Y2]
gi|393807097|gb|EJD68423.1| RNA polymerase sigma factor RpoD [Bacillus sp. 916]
gi|407075116|gb|EKE48103.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429487518|gb|AFZ91442.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850032|gb|AGF27024.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens IT-45]
gi|452080544|emb|CCP22307.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 373
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 147 LVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 206
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 207 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPV 266
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 267 SLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 326
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 327 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 176/297 (59%), Gaps = 17/297 (5%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
ER + G R ++ R A + GVQ L +K TL + GK WA+ A ++
Sbjct: 119 ERLASELGHRPSLERWAA--TAGVQ----LSDLKPTLSE--GK----RRWAEIAKITVEE 166
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L+Q + G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+G
Sbjct: 167 LEQIQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKG 226
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
Y+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ + G+ P ++A
Sbjct: 227 YRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLA 286
Query: 406 KYTGLSLAEIRSASECLRIVGSI--DQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
++ +++R LR+ S+ + K+G + + E SV +P+E++MR+ +++
Sbjct: 287 IELEMTPSQVREV--LLRVPRSVSLETKVGKDKDTELGELLETDSV-TPEEMLMRESLQR 343
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
D+ +L L +RER V+++R+GL D P SL EIG+ +S+E +R++E KA+ KLR
Sbjct: 344 DLQNLLADLTTRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLR 400
>gi|410940970|ref|ZP_11372769.1| RNA polymerase sigma factor RpoD [Leptospira noguchii str.
2006001870]
gi|410783529|gb|EKR72521.1| RNA polymerase sigma factor RpoD [Leptospira noguchii str.
2006001870]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|241896072|ref|ZP_04783368.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella
paramesenteroides ATCC 33313]
gi|241870672|gb|EER74423.1| DNA-directed RNA polymerase sigma subunit RpoD [Weissella
paramesenteroides ATCC 33313]
Length = 378
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 143/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 141 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 200
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI ++ ++
Sbjct: 201 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRNLLQDLGREPTPEEIGAEMDVATEKV 260
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D SP + Q +K+ + +L++L R
Sbjct: 261 RDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQMLKEQLESVLDTLTDR 320
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 321 EENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDFL 377
>gi|359726555|ref|ZP_09265251.1| RNA polymerase sigma-70 factor [Leptospira weilii str. 2006001855]
gi|398332850|ref|ZP_10517555.1| RNA polymerase sigma-70 factor [Leptospira alexanderi serovar
Manhao 3 str. L 60]
gi|417780595|ref|ZP_12428356.1| RNA polymerase sigma factor RpoD [Leptospira weilii str.
2006001853]
gi|410779304|gb|EKR63921.1| RNA polymerase sigma factor RpoD [Leptospira weilii str.
2006001853]
gi|456865569|gb|EMF83903.1| RNA polymerase sigma factor RpoD [Leptospira weilii serovar Topaz
str. LT2116]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|385815882|ref|YP_005852273.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|325125919|gb|ADY85249.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 372
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 146/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ G+KFSTY +W
Sbjct: 135 AKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EIA L + ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K+ + +L++L R
Sbjct: 255 REILKICQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEMLKEQLAEVLDTLSDR 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL LR+GL+D + ++LEE+G+ F V++E IR++E KA+ KLR L FL
Sbjct: 315 EEEVLRLRFGLDDGKSRTLEEVGQHFEVTRERIRQIEAKALRKLRHPSRSSQLRDFL 371
>gi|374710255|ref|ZP_09714689.1| RNA polymerase sigma factor RpoD [Sporolactobacillus inulinus CASD]
Length = 368
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ G+ P EI K L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQQLQDLGREPTPEEIGKEMELPPEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ K+P + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQDAKAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 167/293 (56%), Gaps = 2/293 (0%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + L K L KE + + WA ++E L
Sbjct: 31 LHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELS 90
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYK
Sbjct: 91 RILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+HAR I++P + +++KI+K ++ LT G+ P EIA
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIAAA 210
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
L ++IR R S+D ++GD + + E D + SP + + +++D+
Sbjct: 211 LELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELLEDETA-SPDNYITSELLRQDLDT 269
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++ L ++R V++LR+GL D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 270 LISELTPQQRDVIILRFGLEDGTEMSLAKVGERLNLSRERVRQLEHQALAHLR 322
>gi|456969936|gb|EMG10820.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 336
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 49 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 101
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 102 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 161
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 162 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 221
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 222 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 281
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 282 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 334
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 167/293 (56%), Gaps = 2/293 (0%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + L K L KE + + WA ++E L
Sbjct: 31 LHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELS 90
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYK
Sbjct: 91 RILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+HAR I++P + +++KI+K ++ LT G+ P EIA
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIATA 210
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
L ++IR R S+D ++GD + + E D + SP + + +++D+
Sbjct: 211 LELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELLEDETA-SPDNYITSELLRQDLDT 269
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++ L ++R V++LR+GL D SL ++G+ ++S+E +R+LE +A+ LR
Sbjct: 270 LISELTPQQRDVIILRFGLEDGTEMSLAKVGERLNLSRERVRQLEHQALAHLR 322
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 145/240 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 207 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 266
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 267 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 326
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ + R S+DQ IGD +++ +F D + V M+ + +L++L
Sbjct: 327 DKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQTL 386
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR + L +L
Sbjct: 387 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 446
>gi|398336925|ref|ZP_10521630.1| RNA polymerase sigma-70 factor [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|386005579|ref|YP_005923858.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
gi|380726067|gb|AFE13862.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
Length = 324
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 79 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 138
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 139 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 198
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 199 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 258
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L++L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 259 VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 318
Query: 528 LSHFL 532
L +L
Sbjct: 319 LRDYL 323
>gi|433647336|ref|YP_007292338.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297113|gb|AGB22933.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 518
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 273 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 332
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 333 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 392
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 393 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 452
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+LE+L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 453 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 512
Query: 528 LSHFL 532
L +L
Sbjct: 513 LRDYL 517
>gi|421102433|ref|ZP_15563037.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410367547|gb|EKP22931.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 168/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ F PD V++P + + + ++L +L +RER+V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGGFIPDTEVETPVNAAASSILAEQIRQVLHTLPARERKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|431794831|ref|YP_007221736.1| sigma-70 family RNA polymerase sigma factor [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785057|gb|AGA70340.1| RNA polymerase sigma factor, sigma-70 family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 393
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 138/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 167 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWWIRQAITRAIAD 226
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIA +S+ +R + +
Sbjct: 227 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIATQMDISVERVREIMKIAQEPV 286
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F PD +P E +K+ + +LE+L RE +VL LR+GL
Sbjct: 287 SLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGL 346
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G+ F V++E IR++E KA+ KLR + L +L
Sbjct: 347 DDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 392
>gi|188526895|ref|YP_001909582.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi470]
gi|188143135|gb|ACD47552.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi470]
Length = 661
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 422 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 481
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 482 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 541
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 542 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNER 601
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 602 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 659
>gi|406965702|gb|EKD91309.1| hypothetical protein ACD_30C00025G0003 [uncultured bacterium]
Length = 327
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 140/237 (59%), Gaps = 2/237 (0%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R+EL + LV+ +AR Y+ G+P DL+Q GN+G+L+ ++FD+TRG++FSTY
Sbjct: 92 GERARDELAEKNLKLVVSVARRYKDRGLPLGDLIQNGNLGLLRAVDKFDYTRGFRFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++ + + HA ++IP +N ++++ HG+ P+ E A+ +
Sbjct: 152 TWWIRQAVMRSLTDHANTVRIPVHMNDALTRLNNMLGNFIQEHGREPDIEESARLIDIHP 211
Query: 413 AEIRSASECLRIVGSIDQKI-GDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILES 471
+R A I S+D K+ G+ N + D+ + P+EI +R ++++ R +E
Sbjct: 212 DTLRDARRVHTIY-SLDIKVNGEDKNITLGDSVVDKEAEDPEEIAIRGMRQENIRRAVED 270
Query: 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L SRER+VL LRYGL D R ++LEE+G F V++E IR+LE KA+ R + RD
Sbjct: 271 LPSREREVLQLRYGLVDGRERTLEEVGIEFGVTRERIRQLEAKAINIFRKKYSPRDF 327
>gi|154173683|ref|YP_001408074.1| RNA polymerase sigma factor RpoD [Campylobacter curvus 525.92]
gi|112802903|gb|EAU00247.1| RNA polymerase sigma factor RpoD (Sigma-A) (Major vegetative
sigmafactor) [Campylobacter curvus 525.92]
Length = 614
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 145/234 (61%), Gaps = 1/234 (0%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 379 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQA 438
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 439 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVDKVKQVI 498
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
+ + S++ I + + K+ +F D+S SP E +++ +++ + +L L+ RE+ V
Sbjct: 499 KITKEPISLEAPIANEEDGKFGDFVEDKSSLSPIEQILKGDLREQIDDVLSQLNDREKAV 558
Query: 480 LVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+G L D ++LEEIGK +V++E +R++E A+ KL+ + R L +++
Sbjct: 559 ICMRFGLLEDESDRTLEEIGKALNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 612
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 168/286 (58%), Gaps = 7/286 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L K L K+ + +L WA+ +S++ L++ L G ++++
Sbjct: 44 QEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQAKQKM 103
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRG++FSTY +WIR+ +
Sbjct: 104 IEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWWIRQGV 163
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A+ +R I++P + +++KI++ ++ L+ G+ P IEIA+ L ++R E
Sbjct: 164 TRAIAQQSRTIRLPIHMTEKLNKIKRTQRELSQKLGRTPTSIEIAEAIDLQPEQVR---E 220
Query: 421 CLRIVG---SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRER 477
CL + S++ +IGD + + D + P+ +R+ +++ V IL L +++R
Sbjct: 221 CLLLARHPISLEARIGDEQDTELQNILQDDGL-LPESYAVRESIRESVQNILSKLPTQQR 279
Query: 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
++L LR+GL D SL +IG+ +S+E +R+LE++A + LR E
Sbjct: 280 EILTLRFGLADGNELSLAQIGQRMGISRERVRQLEQQAFSFLRRYE 325
>gi|421097573|ref|ZP_15558258.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200901122]
gi|410799400|gb|EKS01475.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200901122]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|420411436|ref|ZP_14910568.1| RNA polymerase sigma factor [Helicobacter pylori NQ4228]
gi|393030225|gb|EJB31304.1| RNA polymerase sigma factor [Helicobacter pylori NQ4228]
Length = 686
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 151/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 447 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 506
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + GK P+ +A+ GLSL ++
Sbjct: 507 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKV 566
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 567 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 626
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 627 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 684
>gi|298247391|ref|ZP_06971196.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297550050|gb|EFH83916.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 385
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 139/237 (58%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ L ++ LV+ +AR Y G G+ +DL+Q GN G++ E+FD+TRG+KFSTY +W
Sbjct: 148 ARDRLTEANLRLVVSIARKYMGRGMALADLIQEGNAGLMLAVEKFDYTRGFKFSTYATWW 207
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + ++++ + L G+ P EIA+ +S+ +
Sbjct: 208 IRQAINRAIANQARTIRLPVHFHEAVNRLHRTSSQLFQELGREPSAEEIAERMHISVDTV 267
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
E + S++ +GD ++ +F D+ SP +I R +++ + +L+ L+ R
Sbjct: 268 YDILEAGKQPISLESPVGDDGDSSLGDFVEDQVTASPADITTRNILREQIAHVLDELNER 327
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER ++ +G D + +L EIG+ H+S+E +R++E KA+ KLR S + R L FL
Sbjct: 328 ERHIIQYHFGFLDGKEHTLAEIGENLHLSRERVRQIEAKALRKLRQSYSSRQLKDFL 384
>gi|254556820|ref|YP_003063237.1| RNA polymerase sigma factor RpoD [Lactobacillus plantarum JDM1]
gi|254045747|gb|ACT62540.1| RNA polymerase sigma factor RpoD [Lactobacillus plantarum JDM1]
Length = 368
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 131 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 190
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + ++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKV 250
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP + + +K+ + +L++L +R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTLTNR 310
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 170/294 (57%), Gaps = 4/294 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G+ AS A+AAG+SE LK+ L
Sbjct: 37 RVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQS 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 157 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPE 216
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
E++ R S++ K+GD + L + P E V MK D+ +LE L
Sbjct: 217 EEVKDLMCRARQPMSLEMKVGDG-DETELLELLAGEEELPSEKVEVDCMKGDLRTLLEKL 275
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD-SETC 525
+ +VL +RYG++ P +L IG++ +S++ +R LE+ + LR SET
Sbjct: 276 PELQGRVLRMRYGIDGGEPMNLTGIGRILDISRDRVRNLERHGLNGLRQLSETV 329
>gi|422843866|ref|ZP_16890576.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325686026|gb|EGD28084.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 372
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ GYKFSTY +W
Sbjct: 135 AKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGYKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EI L + ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIGAEMDLPVKKV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K+ + +L++L R
Sbjct: 255 REILKLCQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEMLKEQLAEVLDTLSDR 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL LR+GL+D + ++LEE+G+ F V++E IR++E KA+ KLR L FL
Sbjct: 315 EEEVLRLRFGLDDGKARTLEEVGQHFEVTRERIRQIEAKALRKLRHPSRSSQLRDFL 371
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 174/293 (59%), Gaps = 7/293 (2%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ +L+ G+ A+ ++E+ L+ L G + ++I
Sbjct: 85 EVELARRVRFIEEVRELQASLQATKGQVAA------ELDMTEKQLESRLYQGRVAKRKMI 138
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 139 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 198
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +++ ++R +
Sbjct: 199 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMAEALEITVQQLRQLQQL 258
Query: 422 LRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL-ESLDSRERQVL 480
R S++ ++G + + ++ D +SP+ + M+++++ +L + L RE+ V+
Sbjct: 259 RRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVLGDVLTPREKDVI 318
Query: 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533
LRYGL P +LEE+G +F++S+E +R+++ KAM KLR + L +L+
Sbjct: 319 SLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWLI 371
>gi|418719109|ref|ZP_13278309.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str. UI
09149]
gi|418738638|ref|ZP_13295031.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421094152|ref|ZP_15554872.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200801926]
gi|410362878|gb|EKP13911.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200801926]
gi|410744262|gb|EKQ93003.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str. UI
09149]
gi|410745336|gb|EKQ98246.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456887892|gb|EMF98905.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200701203]
Length = 585
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>gi|420396823|ref|ZP_14896041.1| RNA polymerase sigma factor [Helicobacter pylori CPY1313]
gi|393012485|gb|EJB13663.1| RNA polymerase sigma factor [Helicobacter pylori CPY1313]
Length = 661
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 422 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 481
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 482 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 541
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 542 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVLDQLNER 601
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 602 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 659
>gi|311069121|ref|YP_003974044.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus 1942]
gi|419820232|ref|ZP_14343844.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus C89]
gi|310869638|gb|ADP33113.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus 1942]
gi|388475644|gb|EIM12355.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus C89]
Length = 373
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 147 LVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 206
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 207 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPV 266
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 267 SLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 326
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 327 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>gi|404494349|ref|YP_006718455.1| RNA polymerase sigma-70 factor RpoD [Pelobacter carbinolicus DSM
2380]
gi|77546352|gb|ABA89914.1| RNA polymerase sigma-70 factor RpoD [Pelobacter carbinolicus DSM
2380]
Length = 588
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 148/250 (59%), Gaps = 3/250 (1%)
Query: 286 LKQHLAFGW---YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
LK+ + W + EL+++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++
Sbjct: 336 LKEVMKGEWRAKAAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 395
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
RGYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+ P
Sbjct: 396 QRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEMGREPVPE 455
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462
EIA+ L L ++R + + S++ IG+ ++ +F D+ V SP E V++ ++
Sbjct: 456 EIAERMELPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKGVVSPLEAVIKGNLS 515
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
R+L SL RE +VL +R+G+ + +LEE+G+ F V++E IR++E KA+ KLR
Sbjct: 516 DQTSRVLASLTPREEKVLRMRFGIGEKSDHTLEEVGQDFAVTRERIRQIEAKALRKLRHP 575
Query: 523 ETCRDLSHFL 532
R L F+
Sbjct: 576 SRARRLKSFV 585
>gi|313123889|ref|YP_004034148.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280452|gb|ADQ61171.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 372
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ GYKFSTY +W
Sbjct: 135 AKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGYKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EI L + ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIGAEMDLPVNKV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K+ + +L++L R
Sbjct: 255 REILKLCQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEMLKEQLAEVLDTLSDR 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL LR+GL+D + ++LEE+G+ F V++E IR++E KA+ KLR L FL
Sbjct: 315 EEEVLRLRFGLDDGKARTLEEVGQHFEVTRERIRQIEAKALRKLRHPSRSSQLRDFL 371
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 275 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 334
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 335 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 394
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 395 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 454
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L++L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 455 VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 514
Query: 528 LSHFL 532
L +L
Sbjct: 515 LRDYL 519
>gi|420428103|ref|ZP_14927138.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-17]
gi|393045762|gb|EJB46742.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-17]
Length = 679
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 151/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 440 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 499
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + GK P+ +A+ GLSL ++
Sbjct: 500 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKV 559
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 560 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 619
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 620 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 677
>gi|294055048|ref|YP_003548706.1| RpoD subfamily RNA polymerase sigma-70 subunit [Coraliomargarita
akajimensis DSM 45221]
gi|293614381|gb|ADE54536.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Coraliomargarita
akajimensis DSM 45221]
Length = 639
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 142/237 (59%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RGYKFSTY +W
Sbjct: 381 AKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWW 440
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + ++K+ + +K L G P E+A L + +
Sbjct: 441 IRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQELGHEPTAEEVADEMNLPIERV 500
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+S + + S+ +GD + + +F D+ ++P ++ +++ + +L+SL R
Sbjct: 501 QSIMKMAQQPISLQSPVGDSDDTNFGDFIEDKGAENPYDMTAYSLLREKITDVLDSLTER 560
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
ER+VL LR+GL D ++LEE+G+ F V++E IR++E KA+ K+R R L F
Sbjct: 561 ERRVLSLRFGLADGYSRTLEEVGRQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFF 617
>gi|415885546|ref|ZP_11547474.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus MGA3]
gi|387591215|gb|EIJ83534.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus MGA3]
Length = 375
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 149 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 208
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 209 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPV 268
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 269 SLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 328
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 329 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
>gi|386852074|ref|YP_006270087.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359839578|gb|AEV88019.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 329
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 145/244 (59%)
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
+A G + L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFS
Sbjct: 86 IAEGRAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 145
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WIR++I++ +A AR I+IP + +++++ +AR+ L+ G+ P EIA
Sbjct: 146 TYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRDLSAQLGREPSIAEIATAMA 205
Query: 410 LSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRIL 469
+ ++ R S+DQ +G+ + +F P E V + ++ +V +L
Sbjct: 206 VPEFQVIELISYDREPVSLDQAVGEDGESALGDFVAAVDPNQPGEGVSQGELRSEVEIVL 265
Query: 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLS 529
+L RE V+ LR+GL+D R ++L+E+G+ F +S+E IR++EK M KLRD E L
Sbjct: 266 ATLSERESAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTMLKLRDPERASRLE 325
Query: 530 HFLV 533
+ V
Sbjct: 326 AYAV 329
>gi|355670644|ref|ZP_09057391.1| RNA polymerase sigma factor rpoD [Clostridium citroniae WAL-17108]
gi|354816081|gb|EHF00670.1| RNA polymerase sigma factor rpoD [Clostridium citroniae WAL-17108]
Length = 374
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 146/240 (60%), Gaps = 6/240 (2%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ L +S LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +W
Sbjct: 136 ARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+++ + + L G+ P EIA L +
Sbjct: 196 IRQAITRSIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARVDLP---V 252
Query: 416 RSASECLRIVG---SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
SE L++ S++ IG+ ++ ++F D +V P++ + + + +L +L
Sbjct: 253 ERVSEILKMSQEPVSLETPIGEEEDSHLVDFIQDDNVLVPQDAAAFTLLHEQLMEVLLTL 312
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE++VL LR+GL+D RP++LEE+G+ F V++E IR++E KA+ KLR + L +L
Sbjct: 313 TEREQKVLRLRFGLDDGRPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPSRSKKLKDYL 372
>gi|422843865|ref|ZP_16890575.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325686025|gb|EGD28083.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 373
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 142/237 (59%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL + LV+ +A+ Y G G+ F DL+Q GN+G+++ +FD+ G+KFSTY +W
Sbjct: 136 AKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVGKFDYQLGFKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EIA L + ++
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKV 255
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K + +L++L
Sbjct: 256 REVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDS 315
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D P++LEE+G++F V++E IR++E KA+ KLR L FL
Sbjct: 316 EENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFL 372
>gi|300812183|ref|ZP_07092625.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496819|gb|EFK31899.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 372
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+ GYKFSTY +W
Sbjct: 135 AKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGYKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ PE EI L + ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIGAEMDLPVKKV 254
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP++ + +K+ + +L++L R
Sbjct: 255 REILKICQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEMLKEQLAEVLDTLSDR 314
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL LR+GL+D + ++LEE+G+ F V++E IR++E KA+ KLR L FL
Sbjct: 315 EEEVLRLRFGLDDGKARTLEEVGQHFEVTRERIRQIEAKALRKLRHPSRSSQLRDFL 371
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,258,403,215
Number of Sequences: 23463169
Number of extensions: 272332448
Number of successful extensions: 842994
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10561
Number of HSP's successfully gapped in prelim test: 1852
Number of HSP's that attempted gapping in prelim test: 823657
Number of HSP's gapped (non-prelim): 14705
length of query: 534
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 387
effective length of database: 8,910,109,524
effective search space: 3448212385788
effective search space used: 3448212385788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)