BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009449
(534 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24621|SIGC_ARATH RNA polymerase sigma factor sigC OS=Arabidopsis thaliana GN=SIGC
PE=2 SV=1
Length = 571
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 263/510 (51%), Positives = 354/510 (69%), Gaps = 22/510 (4%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRGLGI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHE 359
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHARG+ IP + R I+
Sbjct: 360 DLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINH 419
Query: 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLE 442
IQKARK L SHG KY D EIAK TG S+ +IR+A++CL++VGSID+K+GDC K+LE
Sbjct: 420 IQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLE 479
Query: 443 FAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH 502
F PD +++SP+E VMRQ ++D+ +LE L+ RE+QV+VLRYGL D+RPKSLEEIGKL
Sbjct: 480 FTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLK 539
Query: 503 VSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
VSKEWIRK+E++AM KLRD DL ++L
Sbjct: 540 VSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>sp|O22056|SIGB_ARATH RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB
PE=2 SV=2
Length = 572
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 197/305 (64%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
+ + +L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q
Sbjct: 265 MTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQ 324
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
+ G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KF
Sbjct: 325 RIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKF 384
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ T
Sbjct: 385 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEAT 444
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468
GLS+ + + + S+DQKIG N K E D + ++I++++ M++D+ ++
Sbjct: 445 GLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKV 504
Query: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528
L+SL +RE+QV+ R+G+ D R K+L+EIG++ VS+E +R++E A KL++ + L
Sbjct: 505 LDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHL 564
Query: 529 SHFLV 533
+LV
Sbjct: 565 QQYLV 569
>sp|P26683|RPOD_NOSS1 RNA polymerase sigma factor RpoD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rpoD PE=3 SV=1
Length = 390
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 182/286 (63%), Gaps = 1/286 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R ++ ++ S++ IG +++ +F + ++P++ V + +++D+ ++L+SL
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
RER VL LRYGL+D R K+LEEIG++F+V++E IR++E KA+ KLR
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>sp|P77994|RPOD_THEMA RNA polymerase sigma factor RpoD OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpoD PE=1
SV=3
Length = 399
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 150/239 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 155 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 214
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 215 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 274
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
+ E + S++ IG+ ++ +F D S+ SPK+ MR M++++ ++L++L R
Sbjct: 275 KEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPR 334
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534
E VL +RYGL D +PK+LEE+G+ F+V++E IR++E KA+ KLR + L L L
Sbjct: 335 EAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 393
>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD1 PE=3 SV=2
Length = 399
Score = 182 bits (461), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 182/293 (62%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 95 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 154
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 155 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 214
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 215 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 274
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
+++ ++R ++ ++ S++ IG +++ +F + ++P++ V + +++D+
Sbjct: 275 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDLEG 333
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
+L +L RER VL LRYGL+D R K+LEEIG+LF+V++E IR++E KA+ KLR
Sbjct: 334 VLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386
>sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis
thaliana GN=SIGF PE=1 SV=1
Length = 547
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 172/298 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P E+A + G+S
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 424
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLD 473
++ R S+ Q I + + E PD +++P V +Q M+ V +L L
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLS 484
Query: 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
+ER+++ LR+G++ + +SL EIG+++ +SKE +R+LE +A+ +L+ + L +
Sbjct: 485 PKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542
>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa
GN=rpoD1 PE=3 SV=1
Length = 416
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 139 LSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKK 198
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P
Sbjct: 199 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 258
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 259 VHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGK 318
Query: 435 CLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSL 494
+++ +F + ++P++ V + +++D+ +L++L RER VL LRYGL+D R K+L
Sbjct: 319 EEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTL 377
Query: 495 EEIGKLFHVSKEWIRKLEKKAMTKLR 520
EEIG++F+V++E IR++E KA+ KLR
Sbjct: 378 EEIGQIFNVTRERIRQIEAKALRKLR 403
>sp|P56835|RPOD_CHLMU RNA polymerase sigma factor RpoD OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=rpoD PE=3 SV=1
Length = 571
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 151/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 425 LGEELGFTPDRVREIYKIAQHPISLQAEVGDSGESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD3 PE=3 SV=1
Length = 320
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 165/283 (58%), Gaps = 2/283 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 148
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I++P + +++KI+K ++ L+ G+ E+A L+ A++R
Sbjct: 149 ITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQVRDYL 208
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
E R S+D ++GD + + + + +P+E ++ M++D+ R+L+ L ++RQV
Sbjct: 209 EKARHPLSLDLRVGDNQDTELGDLL-ETDCTTPEEFTLQASMRRDIDRLLDQLTEQQRQV 267
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+ LRYGL D + +L IG +S+E +R+LE++A+ LR +
Sbjct: 268 IALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTLRQA 310
>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor RpoD OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpoD PE=3 SV=1
Length = 425
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
N W+Q + ++ L ++++++S LV+ +A+ Y G+ F DL+Q G++G
Sbjct: 166 NEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLG 225
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 226 LIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLS 285
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452
+ P + EIA+ +++ ++R ++ ++ S++ IG +++ +F + ++P
Sbjct: 286 QEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETP 344
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
++ V + +++D+ +L++L RER VL LRYGL+D R K+LEEIG++F+V++E IR++E
Sbjct: 345 EDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIE 404
Query: 513 KKAMTKLR 520
KA+ KLR
Sbjct: 405 AKALRKLR 412
>sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor RpoD OS=Chlamydia pneumoniae GN=rpoD
PE=3 SV=1
Length = 572
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 153/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ GL+ +R + + S+ ++G+ + + +F D +V+SP E +K
Sbjct: 425 LAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D +PK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>sp|P18333|RPOD_CHLTR RNA polymerase sigma factor RpoD OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpoD PE=3 SV=2
Length = 571
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 151/251 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R+L++ + ++E+++S LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 305 RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 364
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +WIR+++++ +A AR I+IP + I+K+ + K L GK P E
Sbjct: 365 RGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEE 424
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+ + G + +R + + S+ ++GD + + +F D +V+SP E +K
Sbjct: 425 LGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKD 484
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
+ +L++L RER VL+ R+GL D RPK+LEE+G F+V++E IR++E KA+ K+R
Sbjct: 485 KMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPI 544
Query: 524 TCRDLSHFLVL 534
+ L FL L
Sbjct: 545 RSKQLRAFLDL 555
>sp|O83506|RPOD_TREPA RNA polymerase sigma factor RpoD OS=Treponema pallidum (strain
Nichols) GN=rpoD PE=3 SV=1
Length = 611
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 176/306 (57%), Gaps = 7/306 (2%)
Query: 233 GRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASL-----NCWAQAAGVSERVL 286
GR L + R A++ + + + A+ ++ I T ++K + + + N ++ +
Sbjct: 305 GRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIH 364
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
+ H+ +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ +GY
Sbjct: 365 RGHVMLK-KAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGY 423
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
KFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D EIA+
Sbjct: 424 KFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQ 483
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVF 466
++ +++ R S++ IG+ ++ +F PD V++P + R +K++V
Sbjct: 484 QLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVR 543
Query: 467 RILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCR 526
IL +L +RE +VL +R+GL+ ++LEE+G F V++E IR++E KA+ +LR R
Sbjct: 544 SILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSR 603
Query: 527 DLSHFL 532
L FL
Sbjct: 604 RLKDFL 609
>sp|P52328|RPSD2_BACSP RNA polymerase sigma factor RpoD OS=Bacillus sp. GN=sigA PE=3 SV=1
Length = 377
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDH +G+KFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIA LS+ ++R + +
Sbjct: 211 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPV 270
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P + + +K+ + +L++L RE VL LR+GL
Sbjct: 271 SLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGL 330
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 331 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>sp|P55993|RPOD_HELPY RNA polymerase sigma factor RpoD OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=rpoD PE=3 SV=1
Length = 671
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 432 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 491
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +A+ GLSL ++
Sbjct: 492 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKV 551
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 552 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 611
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 612 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 669
>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=rpoD PE=3 SV=1
Length = 585
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=rpoD PE=3 SV=1
Length = 585
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 169/293 (57%), Gaps = 8/293 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ AR I++P + +++K+ + + G+ P + EIA+ G + +++
Sbjct: 411 ITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVK 470
Query: 420 ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479
R S++ +G +++ +F PD V++P + + + ++L +L +RE++V
Sbjct: 471 NVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKV 530
Query: 480 LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+ +R+GL+D P++LEE+G F V++E IR++E KA+ +LR + L ++
Sbjct: 531 IRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>sp|P06224|RPOD_BACSU RNA polymerase sigma factor RpoD OS=Bacillus subtilis (strain 168)
GN=sigA PE=1 SV=2
Length = 371
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A
Sbjct: 145 LVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 204
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EIA+ L+ ++R + +
Sbjct: 205 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPV 264
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 265 SLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 324
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 325 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 370
>sp|Q9ZMY3|RPOD_HELPJ RNA polymerase sigma factor RpoD OS=Helicobacter pylori (strain
J99) GN=rpoD PE=3 SV=1
Length = 681
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 151/238 (63%), Gaps = 1/238 (0%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ + G+PF DL+Q GN+G+++ ++F+H +G+KFSTY +W
Sbjct: 442 AKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWW 501
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + GK P+ +A+ GLSL ++
Sbjct: 502 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKV 561
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
++ + + S++ +G+ + K+ +F D+++ S + +MR+ +K + +L+ L+ R
Sbjct: 562 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 621
Query: 476 ERQVLVLRYG-LNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E+ V+ +R+G L+D ++LEEIGK +V++E +R++E A+ KLR + R L ++L
Sbjct: 622 EKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 679
>sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor RpoD OS=Mycobacterium tuberculosis
GN=rpoD PE=1 SV=1
Length = 528
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 462
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L++L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 463 VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 528 LSHFL 532
L +L
Sbjct: 523 LRDYL 527
>sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor RpoD OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=rpoD PE=3 SV=1
Length = 528
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 147/245 (60%), Gaps = 6/245 (2%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
++ ++ + R S+DQ IGD +++ +F D + V ++ +
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 462
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
+L++L RE V+ LR+GL D +P++L+EIG+++ V++E IR++E K M+KLR +
Sbjct: 463 VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 528 LSHFL 532
L +L
Sbjct: 523 LRDYL 527
>sp|P52329|RPOD_ENTFA RNA polymerase sigma factor RpoD OS=Enterococcus faecalis (strain
ATCC 700802 / V583) GN=rpoD PE=3 SV=2
Length = 368
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 143/237 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 190
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI L ++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKV 250
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D+ SP E + +K+ + +L++L R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDR 310
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
>sp|O66381|RPOD_BACHD RNA polymerase sigma factor RpoD OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=sigA PE=3 SV=2
Length = 372
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 141/226 (62%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 146 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAIAD 205
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P E+A+ L+ ++R + +
Sbjct: 206 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLTPEKVREILKIAQEPV 265
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +P + + +K+ + +L++L RE VL LR+GL
Sbjct: 266 SLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGL 325
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L FL
Sbjct: 326 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
>sp|Q04506|RPOD_LACLA RNA polymerase sigma factor RpoD OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=rpoD PE=3 SV=2
Length = 386
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 146/238 (61%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FDHT+G+KFSTY +
Sbjct: 149 FAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATW 208
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI K ++ +
Sbjct: 209 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDK 268
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDS 474
+R + + S++ IG+ ++ +F D ++SP + R +++ + ++++L
Sbjct: 269 VREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTD 328
Query: 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE VL +R+GL+D R +LE++GK F V++E IR++E KA+ KLR + L F+
Sbjct: 329 REENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPLRDFM 386
>sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor HrdA OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdA
PE=3 SV=2
Length = 396
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 147/250 (58%), Gaps = 14/250 (5%)
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
+ G + LI++ LV+ +A+ Y G G+ DL+Q GN+G+++ E+FD+ RGYKFS
Sbjct: 153 VVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFS 212
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WIR+++S+ +A AR I++P + I+++ + ++ + G P E+A +
Sbjct: 213 TYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAH-- 270
Query: 410 LSLAEIRSASECLRIVG---SIDQKIGDCLNAKYLEFAPDRSVKSPKE----IVMRQHMK 462
L LA R E LR+ S+ +G+ + + D SP E +++RQH++
Sbjct: 271 LDLAPER-VGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLE 329
Query: 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522
+L +L RER+V+ LRYGL D RP++LEEIG+LF V++E IR++E K ++KLRD
Sbjct: 330 A----VLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 385
Query: 523 ETCRDLSHFL 532
L +L
Sbjct: 386 AYADQLRGYL 395
>sp|Q03066|RPSC_NOSS1 RNA polymerase sigma-C factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=sigC PE=3 SV=2
Length = 416
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 153/248 (61%), Gaps = 5/248 (2%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ A ++ L++ + G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 156 WAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLE 215
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ +
Sbjct: 216 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQE 275
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI--DQKIGDCLNAKYLEFAPDRSVKSP 452
G+ P ++A ++ ++R LR+ S+ + K+G + + E V +P
Sbjct: 276 KGRTPTLEDLAIELDMTPTQVREV--LLRVPRSVSLETKVGKDKDTELGELLETDGV-TP 332
Query: 453 KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512
+E++MR+ +++D+ +L L SRER V+++R+GL D P SL EIG+ +S+E +R++E
Sbjct: 333 EEMLMRESLQRDLQHLLADLTSRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIE 392
Query: 513 KKAMTKLR 520
KA+ KLR
Sbjct: 393 SKALQKLR 400
>sp|P52331|RPOD_LISMO RNA polymerase sigma factor RpoD OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=rpoD PE=3 SV=1
Length = 374
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 148 LVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 207
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + +++L G+ P EI + L ++R + +
Sbjct: 208 QARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPV 267
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 268 SLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 327
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G++F V++E IR++E KA+ KLR + L FL
Sbjct: 328 DDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
>sp|Q92BQ6|RPOD_LISIN RNA polymerase sigma factor RpoD OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=rpoD PE=3 SV=1
Length = 374
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 148 LVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 207
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + +++L G+ P EI + L ++R + +
Sbjct: 208 QARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPV 267
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 268 SLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 327
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+G++F V++E IR++E KA+ KLR + L FL
Sbjct: 328 DDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
>sp|Q99TT5|RPOD_STAAN RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
N315) GN=rpoD PE=1 SV=1
Length = 368
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREVLKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor RpoD OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1
Length = 369
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+++G+KFSTY +W
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P +IA+ ++ ++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +++P + R +++ + IL++L R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDR 310
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D + ++LE++GK+F+V++E IR++E KA+ KLR + L F+
Sbjct: 311 EENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPLRDFI 367
>sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor RpoD OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rpoD PE=3
SV=1
Length = 369
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 149/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+++G+KFSTY +W
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P +IA+ ++ ++
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +++P + R +++ + IL++L R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDR 310
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D + ++LE++GK+F+V++E IR++E KA+ KLR + L F+
Sbjct: 311 EENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPLRDFI 367
>sp|P0A0I9|RPOD_STAAW RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MW2) GN=rpoD PE=3 SV=1
Length = 368
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q6G905|RPOD_STAAS RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MSSA476) GN=rpoD PE=3 SV=1
Length = 368
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q6GGD8|RPOD_STAAR RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MRSA252) GN=rpoD PE=3 SV=1
Length = 368
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|P0A0I8|RPOD_STAAM RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1
Length = 368
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q5HFJ9|RPOD_STAAC RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
COL) GN=rpoD PE=3 SV=1
Length = 368
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|P0A0J0|RPOD_STAA8 RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
NCTC 8325) GN=rpoD PE=3 SV=1
Length = 368
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q8CP24|RPOD_STAES RNA polymerase sigma factor RpoD OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=rpoD PE=3 SV=1
Length = 368
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD ++G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q5HNY7|RPOD_STAEQ RNA polymerase sigma factor RpoD OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1
Length = 368
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 140/226 (61%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD ++G+KFSTY +WIR++I++ +A
Sbjct: 142 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAIAD 201
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + ++ L G+ P EI + L ++R + +
Sbjct: 202 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPV 261
Query: 427 SIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGL 486
S++ IG+ ++ +F D+ +SP + + +K+ + +L++L RE VL LR+GL
Sbjct: 262 SLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 321
Query: 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
+D R ++LEE+GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 322 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|P33118|RPSB_CORDI RNA polymerase sigma factor SigB OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=sigB PE=3 SV=2
Length = 329
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 148/248 (59%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD++
Sbjct: 80 RDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYS 139
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A +R I++P L +++K+ + ++ + G+ + E
Sbjct: 140 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEE 199
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKK 463
+A+ +G+ ++I R S+D +G A +F D + V+
Sbjct: 200 LAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHS 259
Query: 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523
D+ +L++L+ RE+ V+ LRYGL+D P++L++IG+ F +S+E +R++E++ M+KLRD
Sbjct: 260 DIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDGA 319
Query: 524 TCRDLSHF 531
L +
Sbjct: 320 RAEKLRAY 327
>sp|P52323|RPOD_BORBU RNA polymerase sigma factor RpoD OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=rpoD PE=3
SV=2
Length = 631
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 177/321 (55%), Gaps = 25/321 (7%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKS 451
GK P D E++ G L ++++ R S++ IG+ ++ +F D+++K+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDKAIKN 546
Query: 452 PKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511
P ++ + IL +L RE++V+ +R+GL D +LEE+G F+V++E IR++
Sbjct: 547 PANHTSFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQI 606
Query: 512 EKKAMTKLRDSETCRDLSHFL 532
E KA+ +L++ + + L +L
Sbjct: 607 ESKALRRLKNPKKTQKLKDYL 627
>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD2 PE=1 SV=1
Length = 320
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 167/293 (56%), Gaps = 2/293 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E + VQ + L +T L G S WA A ++ L
Sbjct: 17 LQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLD 76
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYK
Sbjct: 77 RQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYK 136
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+ +R I++P + +++K++K ++ L+ G+ E+A+
Sbjct: 137 FSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEV 196
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFR 467
L L ++R + R S+D K+GD + + E D SP + V ++ +++D+
Sbjct: 197 LELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQ-SSPSDYVEQESLRRDLRN 255
Query: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520
++ L +++ V+ LRYGL++ SL ++G+ ++S+E +RKLE++AM LR
Sbjct: 256 LMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLR 308
>sp|Q9ZSL6|SIGD_ARATH RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis
thaliana GN=SIGD PE=2 SV=1
Length = 419
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 160/281 (56%), Gaps = 7/281 (2%)
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
A LE + T++E+ + L A G +R + L RE++ + R LV+ +A
Sbjct: 139 AKLENLGTSVEENEMVSVLL---ASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIA 195
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
Y+G G+ DL+Q G++G+L+GAERFD RGYK STYV +WI+++I + +A +R +K
Sbjct: 196 TGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVK 255
Query: 373 IPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKI 432
+P + +K+ +A LT + P EIA++ L+++ +R A E R S+D+
Sbjct: 256 LPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVA 315
Query: 433 GDC--LNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHR 490
+ + + PD + P+E+V R+HMK ++ ++L SL +RE +VL L +GLN
Sbjct: 316 SQNGRMTLQEIVRGPDET--RPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGET 373
Query: 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
P S EEIGK +S+E +R++ A+ KLR+ DL +
Sbjct: 374 PMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414
>sp|D5AQI9|RPOD_RHOCB RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus (strain
ATCC BAA-309 / NBRC 16581 / SB1003) GN=rpoD PE=3 SV=1
Length = 674
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 147/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 436 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 495
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + + + G+ P E+A+ + L ++
Sbjct: 496 IRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKV 555
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IGD +++ +F D++ P + +++++K+ R+L SL R
Sbjct: 556 RKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTPR 615
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL +R+G+ + +LEE+G+ F V++E IR++E KA+ KL+ R L FL
Sbjct: 616 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 672
>sp|P52324|RPOD_CAUCR RNA polymerase sigma factor RpoD OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=rpoD PE=3 SV=1
Length = 652
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 414 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 473
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + + G+ P E+A+ + L ++
Sbjct: 474 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 533
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IGD ++ +F D++ P + ++ ++++ R+L SL R
Sbjct: 534 RKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPR 593
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL +R+G+ + +LEE+G+ F V++E IR++E KA+ KL+ R L FL
Sbjct: 594 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 650
>sp|Q59753|RPOD_RHIME RNA polymerase sigma factor RpoD OS=Rhizobium meliloti (strain
1021) GN=rpoD PE=3 SV=1
Length = 684
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + + G+ P E+A+ + L ++
Sbjct: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ +GD ++ +F D++ P + ++ ++++ R+L SL R
Sbjct: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL +R+G+ + +LEE+G+ F V++E IR++E KA+ KL+ R L FL
Sbjct: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682
>sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor RpoD OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2
Length = 684
Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + + G+ P E+A+ + L ++
Sbjct: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ +GD ++ +F D++ P + ++ ++++ R+L SL R
Sbjct: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL +R+G+ + +LEE+G+ F V++E IR++E KA+ KL+ R L FL
Sbjct: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682
>sp|Q2K619|RPOD_RHIEC RNA polymerase sigma factor rpoD OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=sigA PE=1 SV=1
Length = 685
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 145/237 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 447 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 506
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + + G+ P E+A+ + L ++
Sbjct: 507 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 566
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ +GD ++ +F D++ P + ++ ++++ R+L SL R
Sbjct: 567 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 626
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E +VL +R+G+ + +LEE+G+ F V++E IR++E KA+ KL+ R L FL
Sbjct: 627 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 683
>sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor HrdB OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdB
PE=3 SV=2
Length = 511
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 145/240 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 271 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ + G+ P E+AK ++
Sbjct: 331 TWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTP 390
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472
++ + R S+ +G+ ++++ + D P + V +++ + +L++L
Sbjct: 391 EKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTL 450
Query: 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
RE V+ +R+GL D +PK+L+EIGK++ V++E IR++E K M+KLR + L +L
Sbjct: 451 SEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 510
>sp|O33662|RPOD_STRMU RNA polymerase sigma factor RpoD OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rpoD PE=3 SV=1
Length = 371
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 148/237 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+++G+KFSTY +W
Sbjct: 133 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 192
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + ++ L G+ P +IA+ ++ ++
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 252
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475
R + + S++ IG+ ++ +F D +++P + R +++ + +L++L R
Sbjct: 253 REILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDR 312
Query: 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532
E VL LR+GL+D + ++LE++GK+F V++E IR++E KA+ KLR + L F+
Sbjct: 313 EENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRKLRHPSRSKQLRDFV 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,478,894
Number of Sequences: 539616
Number of extensions: 6720916
Number of successful extensions: 20694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 20326
Number of HSP's gapped (non-prelim): 328
length of query: 534
length of database: 191,569,459
effective HSP length: 122
effective length of query: 412
effective length of database: 125,736,307
effective search space: 51803358484
effective search space used: 51803358484
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)