Query 009449
Match_columns 534
No_of_seqs 363 out of 1790
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 5.4E-53 1.8E-57 450.9 33.6 309 225-533 96-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 6.8E-53 2.3E-57 449.8 30.0 311 223-533 79-423 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 4.3E-43 1.5E-47 389.9 2.3 251 283-533 358-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 1.5E-34 5.2E-39 287.7 14.4 207 222-428 6-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 1.4E-32 4.6E-37 265.6 24.1 222 294-525 11-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 1.4E-31 4.8E-36 258.2 6.1 227 282-520 14-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 1.8E-23 6.1E-28 196.3 15.4 179 283-524 10-189 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 8E-24 2.7E-28 197.4 11.1 171 281-523 11-183 (184)
9 3mzy_A RNA polymerase sigma-H 99.9 3.4E-22 1.2E-26 181.5 14.2 155 319-527 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 4.9E-20 1.7E-24 169.8 -3.4 143 297-527 3-145 (157)
11 1sig_A Sigma70, RNA polymerase 99.7 5.2E-16 1.8E-20 160.4 14.8 85 284-368 250-338 (339)
12 3n0r_A Response regulator; sig 99.6 7.7E-16 2.6E-20 155.4 7.5 141 294-524 20-160 (286)
13 3t72_q RNA polymerase sigma fa 99.5 2.2E-14 7.7E-19 123.7 9.9 80 454-533 2-81 (99)
14 2p7v_B Sigma-70, RNA polymeras 99.3 1E-12 3.4E-17 104.6 5.2 66 468-533 2-67 (68)
15 3hug_A RNA polymerase sigma fa 99.3 9.5E-12 3.2E-16 104.7 11.1 75 449-527 15-89 (92)
16 1tty_A Sigma-A, RNA polymerase 99.3 2.9E-12 1E-16 107.1 7.4 70 463-532 10-79 (87)
17 1ku3_A Sigma factor SIGA; heli 99.3 1.1E-12 3.8E-17 105.8 4.2 70 464-533 3-73 (73)
18 2o7g_A Probable RNA polymerase 99.0 6.5E-10 2.2E-14 95.8 8.8 82 285-369 13-95 (112)
19 2o8x_A Probable RNA polymerase 99.0 6.7E-10 2.3E-14 87.6 7.2 65 460-528 4-68 (70)
20 1h3l_A RNA polymerase sigma fa 98.9 1.1E-09 3.6E-14 90.3 5.6 73 294-368 11-83 (87)
21 1xsv_A Hypothetical UPF0122 pr 98.8 8.1E-09 2.8E-13 90.6 9.3 69 456-528 9-78 (113)
22 3clo_A Transcriptional regulat 98.8 8.5E-12 2.9E-16 123.8 -14.7 155 285-524 86-245 (258)
23 1s7o_A Hypothetical UPF0122 pr 98.7 4.8E-08 1.7E-12 85.8 8.7 63 462-528 12-75 (113)
24 2rnj_A Response regulator prot 98.6 2.4E-08 8.3E-13 83.6 3.4 63 457-524 15-77 (91)
25 1x3u_A Transcriptional regulat 98.5 1.5E-07 5E-12 76.0 6.2 57 463-524 8-64 (79)
26 3c57_A Two component transcrip 98.5 1.4E-07 4.9E-12 79.8 6.3 60 461-525 17-76 (95)
27 1jhg_A Trp operon repressor; c 98.4 1.5E-07 5E-12 81.2 4.7 68 456-524 19-90 (101)
28 1je8_A Nitrate/nitrite respons 98.4 1.8E-07 6.2E-12 77.1 4.1 57 464-525 14-70 (82)
29 1fse_A GERE; helix-turn-helix 98.2 7.9E-07 2.7E-11 70.5 4.5 56 464-524 4-59 (74)
30 3ulq_B Transcriptional regulat 98.1 4.6E-06 1.6E-10 70.1 6.2 51 467-522 25-75 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 5.8E-06 2E-10 63.3 3.8 45 474-523 1-45 (61)
32 1p4w_A RCSB; solution structur 97.9 1.4E-05 4.6E-10 68.5 5.9 48 470-522 33-80 (99)
33 2q0o_A Probable transcriptiona 97.5 0.00012 4.1E-09 71.0 6.9 47 471-522 175-221 (236)
34 1l3l_A Transcriptional activat 97.5 0.00013 4.3E-09 70.8 6.7 47 471-522 173-219 (234)
35 3szt_A QCSR, quorum-sensing co 97.4 0.00038 1.3E-08 67.8 8.6 48 470-522 174-221 (237)
36 3qp6_A CVIR transcriptional re 97.2 0.0003 1E-08 69.9 6.1 47 471-522 197-243 (265)
37 1tc3_C Protein (TC3 transposas 97.0 0.00078 2.7E-08 48.1 4.6 40 471-514 5-44 (51)
38 2w7n_A TRFB transcriptional re 96.7 0.003 1E-07 54.3 6.9 46 471-520 18-63 (101)
39 1yio_A Response regulatory pro 96.6 0.0045 1.5E-07 57.2 7.6 51 466-521 137-187 (208)
40 1a04_A Nitrate/nitrite respons 96.3 0.0061 2.1E-07 56.8 6.8 47 470-521 153-199 (215)
41 2x48_A CAG38821; archeal virus 96.2 0.0033 1.1E-07 46.8 3.6 38 473-515 18-55 (55)
42 3c3w_A Two component transcrip 96.0 0.0084 2.9E-07 56.7 6.2 47 470-521 148-194 (225)
43 3klo_A Transcriptional regulat 95.4 0.014 4.6E-07 55.1 4.9 47 470-521 158-204 (225)
44 3p7n_A Sensor histidine kinase 95.0 0.056 1.9E-06 51.4 8.2 57 461-522 188-244 (258)
45 1p2f_A Response regulator; DRR 93.5 0.061 2.1E-06 50.0 4.5 50 471-521 145-197 (220)
46 1jko_C HIN recombinase, DNA-in 93.2 0.058 2E-06 38.5 3.1 33 477-514 12-44 (52)
47 2gwr_A DNA-binding response re 93.2 0.085 2.9E-06 49.9 5.1 50 471-521 153-207 (238)
48 2oqr_A Sensory transduction pr 92.9 0.075 2.6E-06 49.7 4.2 50 471-521 156-210 (230)
49 1kgs_A DRRD, DNA binding respo 92.5 0.09 3.1E-06 48.8 4.2 50 471-521 151-205 (225)
50 1qgp_A Protein (double strande 92.3 0.11 3.9E-06 41.9 3.9 40 474-513 14-53 (77)
51 1ys7_A Transcriptional regulat 92.1 0.088 3E-06 49.2 3.5 50 471-521 159-213 (233)
52 1qbj_A Protein (double-strande 91.6 0.24 8.2E-06 40.5 5.2 43 475-521 11-53 (81)
53 3ugo_A RNA polymerase sigma fa 91.5 0.034 1.2E-06 54.6 0.0 52 464-520 191-244 (245)
54 1u78_A TC3 transposase, transp 91.4 0.19 6.6E-06 43.5 4.7 40 471-514 6-45 (141)
55 3kor_A Possible Trp repressor; 91.3 0.17 5.7E-06 44.6 4.2 35 470-510 60-94 (119)
56 1pdn_C Protein (PRD paired); p 91.2 0.27 9.2E-06 41.5 5.4 42 471-516 17-58 (128)
57 1zx4_A P1 PARB, plasmid partit 90.6 0.26 9E-06 46.8 5.1 35 477-516 15-49 (192)
58 2hqr_A Putative transcriptiona 90.4 0.077 2.6E-06 49.4 1.3 51 471-522 143-198 (223)
59 3q9s_A DNA-binding response re 90.3 0.16 5.5E-06 48.8 3.5 51 471-522 182-237 (249)
60 1k78_A Paired box protein PAX5 89.4 0.44 1.5E-05 42.2 5.4 42 471-516 32-73 (149)
61 3r0j_A Possible two component 89.3 0.48 1.6E-05 45.1 5.9 50 471-521 176-230 (250)
62 1oyi_A Double-stranded RNA-bin 89.0 0.32 1.1E-05 40.1 3.7 25 490-514 29-53 (82)
63 2elh_A CG11849-PA, LD40883P; s 88.7 0.57 2E-05 38.1 5.2 27 490-516 37-63 (87)
64 2heo_A Z-DNA binding protein 1 87.6 0.55 1.9E-05 36.6 4.2 44 472-521 8-51 (67)
65 3r0a_A Putative transcriptiona 87.6 0.92 3.1E-05 39.3 6.1 49 467-521 19-68 (123)
66 2w48_A Sorbitol operon regulat 87.4 0.63 2.1E-05 46.8 5.6 37 477-517 11-47 (315)
67 2d1h_A ST1889, 109AA long hypo 86.5 1.1 3.7E-05 36.6 5.7 42 469-512 16-57 (109)
68 2jn6_A Protein CGL2762, transp 86.2 1.2 4E-05 36.6 5.7 40 472-515 6-47 (97)
69 3k2z_A LEXA repressor; winged 85.7 0.68 2.3E-05 43.3 4.5 42 471-512 2-45 (196)
70 3tgn_A ADC operon repressor AD 85.6 1.3 4.4E-05 38.2 6.0 40 471-514 35-74 (146)
71 2o3f_A Putative HTH-type trans 85.6 1.7 6E-05 37.2 6.7 51 463-513 10-61 (111)
72 1r1u_A CZRA, repressor protein 85.4 2.2 7.6E-05 35.5 7.2 46 464-513 15-61 (106)
73 3mn2_A Probable ARAC family tr 85.4 10 0.00035 31.2 11.3 38 384-421 4-41 (108)
74 3jth_A Transcription activator 84.8 2.8 9.6E-05 34.1 7.4 49 465-521 13-62 (98)
75 3cuo_A Uncharacterized HTH-typ 84.7 1.5 5E-05 35.5 5.5 38 473-513 23-60 (99)
76 2cfx_A HTH-type transcriptiona 84.4 1.5 5E-05 38.7 5.8 40 471-513 2-41 (144)
77 2k27_A Paired box protein PAX- 83.9 0.47 1.6E-05 42.6 2.4 39 472-514 26-64 (159)
78 3pqk_A Biofilm growth-associat 83.8 2.4 8.3E-05 34.9 6.6 49 465-521 13-62 (102)
79 2gxg_A 146AA long hypothetical 83.8 3.5 0.00012 35.3 8.0 47 464-514 25-73 (146)
80 2k9s_A Arabinose operon regula 83.6 13 0.00044 30.6 11.2 38 384-421 5-43 (107)
81 3oio_A Transcriptional regulat 83.6 10 0.00036 31.5 10.7 40 383-422 8-47 (113)
82 2dbb_A Putative HTH-type trans 83.6 1.9 6.6E-05 38.1 6.3 41 470-513 5-45 (151)
83 2glo_A Brinker CG9653-PA; prot 83.5 1.1 3.7E-05 33.7 4.0 33 490-523 20-56 (59)
84 1sfx_A Conserved hypothetical 83.3 1.5 5.3E-05 35.5 5.2 40 471-513 17-56 (109)
85 3oou_A LIN2118 protein; protei 83.2 14 0.00046 30.5 11.2 39 384-422 7-45 (108)
86 2cyy_A Putative HTH-type trans 82.4 1.9 6.5E-05 38.2 5.8 40 471-513 4-43 (151)
87 2w25_A Probable transcriptiona 82.4 1.9 6.5E-05 38.2 5.7 40 471-513 4-43 (150)
88 2p5v_A Transcriptional regulat 82.3 1.9 6.5E-05 38.7 5.8 40 471-513 7-46 (162)
89 2pn6_A ST1022, 150AA long hypo 82.2 2.1 7.3E-05 37.7 6.0 39 472-513 1-39 (150)
90 3ech_A MEXR, multidrug resista 82.1 3.3 0.00011 35.6 7.1 51 461-514 20-74 (142)
91 2cg4_A Regulatory protein ASNC 81.9 2 6.9E-05 38.1 5.7 41 471-514 5-45 (152)
92 2oqg_A Possible transcriptiona 81.6 2.6 8.9E-05 35.0 6.1 45 465-513 11-56 (114)
93 1i1g_A Transcriptional regulat 81.6 1.7 5.8E-05 37.8 5.1 39 472-513 2-40 (141)
94 3lsg_A Two-component response 81.6 19 0.00067 29.2 11.5 37 386-422 6-43 (103)
95 1sfu_A 34L protein; protein/Z- 81.6 2.2 7.6E-05 34.5 5.2 28 486-513 24-51 (75)
96 2x4h_A Hypothetical protein SS 81.5 2 6.9E-05 37.1 5.5 45 470-514 9-54 (139)
97 3bpv_A Transcriptional regulat 81.5 4 0.00014 34.6 7.3 49 463-514 16-66 (138)
98 3frw_A Putative Trp repressor 81.4 2 7E-05 37.0 5.2 39 472-510 37-77 (107)
99 3nqo_A MARR-family transcripti 81.4 3.6 0.00012 37.7 7.5 53 461-514 28-80 (189)
100 2lkp_A Transcriptional regulat 81.3 2.2 7.4E-05 36.1 5.5 39 472-514 30-68 (119)
101 3i4p_A Transcriptional regulat 81.2 2.4 8.2E-05 38.3 6.1 40 472-514 1-40 (162)
102 2zkz_A Transcriptional repress 81.1 1.9 6.5E-05 35.7 4.9 38 472-513 25-63 (99)
103 3o9x_A Uncharacterized HTH-typ 81.1 4.1 0.00014 35.1 7.4 39 470-514 69-107 (133)
104 3bdd_A Regulatory protein MARR 80.8 4.2 0.00015 34.5 7.3 41 471-514 28-68 (142)
105 1y0u_A Arsenical resistance op 80.7 6.8 0.00023 31.8 8.2 36 473-513 30-65 (96)
106 1uly_A Hypothetical protein PH 80.5 2.6 8.8E-05 39.6 6.2 39 472-514 18-56 (192)
107 2l0k_A Stage III sporulation p 80.4 1.3 4.5E-05 37.1 3.7 37 474-514 7-43 (93)
108 1r1t_A Transcriptional repress 80.3 4.1 0.00014 35.1 7.0 37 473-513 45-81 (122)
109 2nnn_A Probable transcriptiona 80.2 3.1 0.00011 35.3 6.2 48 464-514 27-75 (140)
110 1jhf_A LEXA repressor; LEXA SO 80.0 0.93 3.2E-05 42.3 2.9 44 471-514 3-49 (202)
111 3bro_A Transcriptional regulat 79.9 5.4 0.00018 33.9 7.7 51 462-513 20-72 (141)
112 3eco_A MEPR; mutlidrug efflux 79.8 4.4 0.00015 34.5 7.1 53 461-514 16-70 (139)
113 1ku9_A Hypothetical protein MJ 79.8 4.1 0.00014 34.8 6.9 41 471-513 23-63 (152)
114 2fa5_A Transcriptional regulat 79.5 6.5 0.00022 34.3 8.3 49 463-514 35-86 (162)
115 3iwf_A Transcription regulator 79.4 4.3 0.00015 34.5 6.7 52 462-513 5-57 (107)
116 1uxc_A FRUR (1-57), fructose r 78.9 1.6 5.5E-05 33.9 3.5 23 492-514 1-23 (65)
117 2e1c_A Putative HTH-type trans 78.8 2.9 9.8E-05 38.4 5.8 40 471-513 24-63 (171)
118 2a6c_A Helix-turn-helix motif; 78.7 2.2 7.6E-05 33.8 4.4 26 489-514 29-54 (83)
119 2kko_A Possible transcriptiona 78.7 2.2 7.7E-05 35.8 4.7 43 467-513 17-60 (108)
120 4hbl_A Transcriptional regulat 78.6 6.2 0.00021 34.2 7.8 42 470-514 37-78 (149)
121 3sqn_A Conserved domain protei 78.5 3.9 0.00013 43.8 7.6 118 385-521 21-138 (485)
122 3cdh_A Transcriptional regulat 78.3 7.4 0.00025 33.8 8.2 50 462-514 29-80 (155)
123 2fu4_A Ferric uptake regulatio 78.1 3.8 0.00013 32.3 5.7 46 471-521 14-64 (83)
124 3hsr_A HTH-type transcriptiona 78.1 4.5 0.00016 34.7 6.6 51 461-514 21-73 (140)
125 2ia0_A Putative HTH-type trans 77.8 3.2 0.00011 38.0 5.8 41 470-513 13-53 (171)
126 1hlv_A CENP-B, major centromer 77.7 2.6 8.8E-05 36.2 4.9 45 471-519 7-53 (131)
127 1jgs_A Multiple antibiotic res 77.7 7.1 0.00024 33.0 7.7 51 461-514 19-71 (138)
128 1r69_A Repressor protein CI; g 77.5 2.2 7.4E-05 31.9 3.8 26 489-514 12-37 (69)
129 2xi8_A Putative transcription 77.5 1.9 6.6E-05 31.8 3.5 25 489-513 12-36 (66)
130 3qq6_A HTH-type transcriptiona 77.4 2.1 7.2E-05 33.7 3.9 26 489-514 21-46 (78)
131 1zug_A Phage 434 CRO protein; 77.4 2.2 7.4E-05 32.1 3.8 26 489-514 14-39 (71)
132 1s3j_A YUSO protein; structura 77.2 3.9 0.00013 35.5 6.0 48 464-514 25-74 (155)
133 2qww_A Transcriptional regulat 77.1 6.3 0.00021 34.1 7.4 41 471-514 38-78 (154)
134 2rdp_A Putative transcriptiona 77.0 6.5 0.00022 33.8 7.4 48 464-514 30-79 (150)
135 2jt1_A PEFI protein; solution 76.8 3.9 0.00013 33.0 5.3 30 396-425 22-51 (77)
136 4b8x_A SCO5413, possible MARR- 76.7 5 0.00017 35.2 6.6 53 461-514 20-74 (147)
137 2nyx_A Probable transcriptiona 76.6 4.8 0.00017 35.9 6.6 41 471-514 42-82 (168)
138 1u78_A TC3 transposase, transp 76.6 17 0.00058 30.8 9.9 78 399-515 23-103 (141)
139 2fbh_A Transcriptional regulat 76.5 5.6 0.00019 33.9 6.7 50 463-514 24-75 (146)
140 3hyi_A Protein DUF199/WHIA; la 76.4 5.6 0.00019 40.1 7.5 51 463-516 233-285 (295)
141 3mkl_A HTH-type transcriptiona 76.2 20 0.00067 30.2 10.1 36 385-420 10-45 (120)
142 1y7y_A C.AHDI; helix-turn-heli 76.1 2.5 8.5E-05 32.0 3.9 26 489-514 24-49 (74)
143 3fmy_A HTH-type transcriptiona 75.9 2.6 8.9E-05 32.7 4.0 37 472-514 11-47 (73)
144 1bl0_A Protein (multiple antib 75.8 22 0.00075 30.3 10.4 38 384-421 13-50 (129)
145 2b5a_A C.BCLI; helix-turn-heli 75.8 2.5 8.7E-05 32.3 3.9 25 489-513 21-45 (77)
146 3b7h_A Prophage LP1 protein 11 75.8 2.9 9.9E-05 32.0 4.2 26 489-514 18-43 (78)
147 3kp7_A Transcriptional regulat 75.7 4.9 0.00017 34.9 6.2 40 471-514 35-74 (151)
148 2htj_A P fimbrial regulatory p 75.7 4.6 0.00016 31.9 5.5 24 490-513 13-36 (81)
149 3f6w_A XRE-family like protein 75.5 1.9 6.5E-05 33.8 3.1 25 489-513 25-49 (83)
150 3f3x_A Transcriptional regulat 75.4 6.3 0.00022 33.8 6.8 40 471-514 34-73 (144)
151 3bj6_A Transcriptional regulat 75.4 7.5 0.00026 33.5 7.4 41 471-514 37-77 (152)
152 3oop_A LIN2960 protein; protei 75.3 5 0.00017 34.4 6.1 50 462-514 23-74 (143)
153 3fm5_A Transcriptional regulat 75.3 7.7 0.00026 33.5 7.4 52 461-514 24-77 (150)
154 3eus_A DNA-binding protein; st 75.2 2.4 8.4E-05 33.9 3.8 26 489-514 25-50 (86)
155 2wiu_B HTH-type transcriptiona 75.1 3.2 0.00011 32.7 4.4 26 489-514 23-48 (88)
156 3t76_A VANU, transcriptional r 75.1 2.6 8.7E-05 34.6 3.9 26 489-514 35-60 (88)
157 3kz3_A Repressor protein CI; f 75.1 1.9 6.4E-05 33.8 3.0 24 490-513 24-47 (80)
158 3cjn_A Transcriptional regulat 75.0 5.2 0.00018 35.1 6.3 41 471-514 49-89 (162)
159 3nrv_A Putative transcriptiona 75.0 4.3 0.00015 35.0 5.6 41 471-514 37-77 (148)
160 2r1j_L Repressor protein C2; p 74.9 2.1 7.2E-05 31.7 3.1 25 490-514 17-41 (68)
161 4ghj_A Probable transcriptiona 74.9 2.5 8.5E-05 35.7 3.8 25 489-513 47-71 (101)
162 1neq_A DNA-binding protein NER 74.7 2.4 8.2E-05 33.7 3.5 26 489-514 20-45 (74)
163 2k9q_A Uncharacterized protein 74.6 2.1 7.2E-05 33.2 3.1 24 490-513 14-37 (77)
164 3g3z_A NMB1585, transcriptiona 74.5 8.2 0.00028 33.1 7.3 48 464-514 19-68 (145)
165 1x57_A Endothelial differentia 74.4 4.1 0.00014 32.6 4.9 25 489-513 24-48 (91)
166 2qvo_A Uncharacterized protein 74.4 2.6 8.9E-05 34.4 3.8 44 471-514 9-53 (95)
167 3s2w_A Transcriptional regulat 74.2 5 0.00017 35.2 6.0 51 461-514 35-87 (159)
168 2pex_A Transcriptional regulat 74.0 7.1 0.00024 33.8 6.8 50 462-514 33-84 (153)
169 3s8q_A R-M controller protein; 73.9 2.9 0.0001 32.6 3.9 26 489-514 22-47 (82)
170 3omt_A Uncharacterized protein 73.9 2.2 7.5E-05 32.7 3.1 25 490-514 20-44 (73)
171 2p5k_A Arginine repressor; DNA 73.7 4 0.00014 30.4 4.4 25 489-513 17-46 (64)
172 1q1h_A TFE, transcription fact 73.6 1.9 6.4E-05 36.1 2.8 44 472-521 16-59 (110)
173 2ewt_A BLDD, putative DNA-bind 73.5 3.7 0.00013 30.9 4.3 26 489-514 19-46 (71)
174 2kpj_A SOS-response transcript 73.5 3.5 0.00012 33.3 4.4 26 489-514 20-45 (94)
175 2rn7_A IS629 ORFA; helix, all 73.4 1.8 6.1E-05 36.1 2.6 25 492-516 31-55 (108)
176 2ef8_A C.ECOT38IS, putative tr 72.9 3.2 0.00011 32.3 3.9 24 490-513 22-45 (84)
177 1p6r_A Penicillinase repressor 72.8 4 0.00014 32.2 4.5 42 470-514 5-50 (82)
178 2gau_A Transcriptional regulat 72.8 14 0.00049 33.9 9.1 50 469-522 148-207 (232)
179 3k0l_A Repressor protein; heli 72.6 8.4 0.00029 33.9 7.1 51 461-514 31-83 (162)
180 1adr_A P22 C2 repressor; trans 72.4 2.6 8.8E-05 32.1 3.1 24 490-513 17-40 (76)
181 2a61_A Transcriptional regulat 71.9 5 0.00017 34.2 5.3 41 471-514 30-70 (145)
182 3bs3_A Putative DNA-binding pr 71.6 3.2 0.00011 31.6 3.6 25 489-513 21-45 (76)
183 2jt1_A PEFI protein; solution 71.4 2.7 9.1E-05 33.9 3.1 24 490-513 23-46 (77)
184 2jsc_A Transcriptional regulat 71.3 3.9 0.00013 34.9 4.3 37 473-513 20-56 (118)
185 1lj9_A Transcriptional regulat 71.2 6.6 0.00022 33.5 5.9 50 462-514 15-66 (144)
186 2ppx_A AGR_C_3184P, uncharacte 71.2 3.3 0.00011 33.9 3.7 25 489-513 41-65 (99)
187 2dk5_A DNA-directed RNA polyme 70.8 2.7 9.1E-05 34.9 3.0 43 470-513 16-58 (91)
188 3boq_A Transcriptional regulat 70.3 5.5 0.00019 34.8 5.2 42 471-514 44-85 (160)
189 3bja_A Transcriptional regulat 70.2 5 0.00017 33.9 4.8 49 463-514 20-70 (139)
190 2wus_R RODZ, putative uncharac 70.2 5 0.00017 34.3 4.7 30 481-514 14-43 (112)
191 2fbi_A Probable transcriptiona 70.1 4.5 0.00015 34.4 4.5 41 471-514 33-73 (142)
192 4aik_A Transcriptional regulat 69.9 14 0.00048 32.5 7.9 51 462-514 17-69 (151)
193 3g5g_A Regulatory protein; tra 69.8 3.9 0.00013 33.9 3.9 26 489-514 39-64 (99)
194 3bd1_A CRO protein; transcript 69.4 3.6 0.00012 32.1 3.5 24 490-514 11-34 (79)
195 4fx0_A Probable transcriptiona 69.4 15 0.00052 32.2 8.0 52 463-514 20-75 (148)
196 2o38_A Hypothetical protein; a 69.3 3.9 0.00013 35.3 3.9 25 489-513 51-75 (120)
197 3f6o_A Probable transcriptiona 69.3 3.6 0.00012 35.0 3.7 36 473-512 17-52 (118)
198 3deu_A Transcriptional regulat 69.2 10 0.00035 33.8 6.9 52 461-514 38-91 (166)
199 1on2_A Transcriptional regulat 68.8 3.9 0.00013 35.4 3.9 42 472-513 2-44 (142)
200 3trb_A Virulence-associated pr 68.6 4.8 0.00016 33.9 4.2 25 489-513 25-49 (104)
201 1xmk_A Double-stranded RNA-spe 68.4 3.4 0.00012 33.6 3.1 26 489-514 23-49 (79)
202 2hin_A GP39, repressor protein 68.1 4.1 0.00014 32.3 3.5 22 493-514 12-33 (71)
203 2eth_A Transcriptional regulat 68.0 5.6 0.00019 34.7 4.8 41 471-514 41-81 (154)
204 1u2w_A CADC repressor, cadmium 68.0 11 0.00036 32.3 6.4 38 473-513 41-78 (122)
205 1gdt_A GD resolvase, protein ( 67.9 4.6 0.00016 36.9 4.4 25 489-513 156-180 (183)
206 1tbx_A ORF F-93, hypothetical 67.2 4.5 0.00015 32.8 3.7 41 471-514 5-49 (99)
207 2b0l_A GTP-sensing transcripti 66.8 4 0.00014 34.4 3.3 30 489-522 40-70 (102)
208 2r0q_C Putative transposon TN5 66.8 4.4 0.00015 38.0 4.0 32 477-513 166-197 (209)
209 1lmb_3 Protein (lambda repress 66.6 3.9 0.00013 32.6 3.1 25 490-514 29-53 (92)
210 1rzs_A Antirepressor, regulato 66.3 2.4 8.3E-05 32.1 1.7 21 492-512 11-31 (61)
211 3vk0_A NHTF, transcriptional r 66.1 4.2 0.00014 34.2 3.4 25 489-513 32-56 (114)
212 3e6m_A MARR family transcripti 66.1 10 0.00035 33.3 6.1 50 462-514 39-90 (161)
213 3jw4_A Transcriptional regulat 66.1 5.9 0.0002 34.2 4.5 50 464-514 29-80 (148)
214 4ich_A Transcriptional regulat 66.1 3.2 0.00011 40.7 3.0 23 489-511 138-160 (311)
215 2g9w_A Conserved hypothetical 66.0 7.5 0.00026 33.8 5.2 44 469-514 4-51 (138)
216 2pij_A Prophage PFL 6 CRO; tra 65.9 5.9 0.0002 29.6 3.9 22 490-512 13-34 (67)
217 1z4h_A TORI, TOR inhibition pr 65.7 4.7 0.00016 31.0 3.3 26 490-515 9-34 (66)
218 2hr3_A Probable transcriptiona 65.4 4.9 0.00017 34.5 3.8 42 471-514 32-73 (147)
219 2fbk_A Transcriptional regulat 65.3 6.7 0.00023 35.3 4.9 53 462-514 55-109 (181)
220 1ub9_A Hypothetical protein PH 65.2 4.7 0.00016 32.3 3.4 38 473-513 15-52 (100)
221 2wte_A CSA3; antiviral protein 65.1 9.4 0.00032 37.1 6.1 47 468-521 146-192 (244)
222 3b73_A PHIH1 repressor-like pr 65.1 5.6 0.00019 34.2 4.0 40 472-514 11-52 (111)
223 3mlf_A Transcriptional regulat 64.7 5.8 0.0002 33.5 4.0 26 489-514 34-59 (111)
224 3u2r_A Regulatory protein MARR 64.6 7.3 0.00025 34.5 4.9 53 461-514 31-85 (168)
225 2ict_A Antitoxin HIGA; helix-t 64.6 5.4 0.00019 32.0 3.7 25 490-514 20-44 (94)
226 3kxa_A NGO0477 protein, putati 64.6 5.4 0.00019 35.3 4.0 26 489-514 79-104 (141)
227 4ham_A LMO2241 protein; struct 64.5 5.5 0.00019 34.8 3.9 29 489-521 35-64 (134)
228 3op9_A PLI0006 protein; struct 64.4 5.2 0.00018 33.4 3.7 26 489-514 20-45 (114)
229 2l8n_A Transcriptional repress 63.9 3 0.0001 32.5 1.9 23 491-513 9-31 (67)
230 2auw_A Hypothetical protein NE 63.9 5.3 0.00018 37.1 3.8 36 472-513 90-125 (170)
231 2l49_A C protein; P2 bacteriop 63.8 5.1 0.00018 32.3 3.4 26 489-514 15-40 (99)
232 1b0n_A Protein (SINR protein); 63.8 6 0.00021 32.5 3.9 26 489-514 12-37 (111)
233 1j5y_A Transcriptional regulat 63.6 7.9 0.00027 35.7 5.0 38 474-513 21-58 (187)
234 2bv6_A MGRA, HTH-type transcri 63.3 7.7 0.00026 33.0 4.7 41 471-514 34-74 (142)
235 2hzt_A Putative HTH-type trans 63.2 6.3 0.00022 32.8 3.9 44 466-513 5-50 (107)
236 2frh_A SARA, staphylococcal ac 62.9 4.1 0.00014 34.8 2.8 48 465-513 26-75 (127)
237 4ev0_A Transcription regulator 62.7 14 0.00046 33.5 6.5 29 490-522 162-190 (216)
238 3ryp_A Catabolite gene activat 62.4 28 0.00097 31.1 8.6 28 491-522 167-194 (210)
239 1ic8_A Hepatocyte nuclear fact 62.4 15 0.0005 34.8 6.7 25 489-513 41-65 (194)
240 3ivp_A Putative transposon-rel 62.3 7.7 0.00026 33.0 4.4 26 489-514 23-48 (126)
241 1okr_A MECI, methicillin resis 62.3 6.3 0.00021 33.1 3.8 43 470-515 6-52 (123)
242 1l9z_H Sigma factor SIGA; heli 61.2 94 0.0032 32.8 13.4 35 254-288 285-321 (438)
243 2eby_A Putative HTH-type trans 61.1 7.3 0.00025 32.4 3.9 26 489-514 22-47 (113)
244 2zcw_A TTHA1359, transcription 61.0 19 0.00067 32.3 7.2 50 469-522 114-173 (202)
245 3mky_B Protein SOPB; partition 60.9 11 0.00036 35.7 5.3 48 467-515 19-66 (189)
246 1g2h_A Transcriptional regulat 60.7 6.9 0.00023 29.6 3.4 22 492-513 34-55 (61)
247 2cw1_A SN4M; lambda CRO fold, 60.7 7 0.00024 30.4 3.4 22 492-513 14-35 (65)
248 1z91_A Organic hydroperoxide r 60.4 6.8 0.00023 33.5 3.8 42 471-515 37-78 (147)
249 2oz6_A Virulence factor regula 60.4 6.4 0.00022 35.5 3.7 28 491-522 164-191 (207)
250 1pdn_C Protein (PRD paired); p 60.3 42 0.0014 27.5 8.7 26 399-424 34-59 (128)
251 1ft9_A Carbon monoxide oxidati 60.1 7.6 0.00026 35.7 4.3 28 491-522 163-190 (222)
252 3fym_A Putative uncharacterize 60.0 7.4 0.00025 33.9 3.9 27 489-515 14-40 (130)
253 2o0m_A Transcriptional regulat 60.0 1.9 6.4E-05 44.0 0.0 43 472-517 18-60 (345)
254 3gbg_A TCP pilus virulence reg 59.8 58 0.002 30.9 10.8 35 386-420 173-207 (276)
255 3cec_A Putative antidote prote 59.5 6 0.00021 32.5 3.1 25 490-514 30-54 (104)
256 3e97_A Transcriptional regulat 59.3 8.1 0.00028 35.6 4.3 29 490-522 174-202 (231)
257 3dv8_A Transcriptional regulat 59.2 8.3 0.00028 35.1 4.3 28 491-522 169-196 (220)
258 1xn7_A Hypothetical protein YH 59.1 7.5 0.00026 31.3 3.5 26 489-514 14-39 (78)
259 3eco_A MEPR; mutlidrug efflux 58.9 64 0.0022 26.9 9.8 65 351-423 7-72 (139)
260 3f52_A CLP gene regulator (CLG 58.9 5.9 0.0002 33.2 3.0 25 490-514 40-64 (117)
261 2fxa_A Protease production reg 58.7 17 0.00059 33.8 6.5 48 464-514 36-85 (207)
262 1j1v_A Chromosomal replication 58.6 19 0.00066 29.8 6.1 32 489-520 44-76 (94)
263 3d0s_A Transcriptional regulat 58.5 32 0.0011 31.3 8.3 50 469-522 144-204 (227)
264 1rr7_A Middle operon regulator 58.0 13 0.00043 32.8 5.1 39 474-518 81-119 (129)
265 2ao9_A Phage protein; structur 57.9 8.8 0.0003 35.1 4.1 45 470-514 22-71 (155)
266 3f6v_A Possible transcriptiona 57.7 7 0.00024 35.1 3.4 37 473-513 57-93 (151)
267 3tqn_A Transcriptional regulat 57.5 7.8 0.00027 32.8 3.5 29 489-521 30-59 (113)
268 3fm5_A Transcriptional regulat 57.4 89 0.003 26.5 10.9 66 350-423 14-79 (150)
269 3b02_A Transcriptional regulat 57.3 6.6 0.00023 35.4 3.3 50 469-522 107-166 (195)
270 2fmy_A COOA, carbon monoxide o 57.1 8.8 0.0003 35.1 4.2 29 490-522 166-194 (220)
271 2kfs_A Conserved hypothetical 57.1 5.4 0.00018 36.3 2.5 25 490-514 30-54 (148)
272 3lfp_A CSP231I C protein; tran 56.9 8.6 0.00029 31.2 3.6 25 490-514 13-41 (98)
273 1z7u_A Hypothetical protein EF 56.7 10 0.00035 31.8 4.1 45 465-513 12-58 (112)
274 3iwz_A CAP-like, catabolite ac 56.7 8.1 0.00028 35.4 3.8 28 491-522 187-214 (230)
275 2da4_A Hypothetical protein DK 56.5 20 0.00067 28.4 5.6 47 472-522 15-70 (80)
276 3la7_A Global nitrogen regulat 56.2 9.6 0.00033 35.7 4.3 29 490-522 192-220 (243)
277 3dkw_A DNR protein; CRP-FNR, H 56.0 8.2 0.00028 35.3 3.7 29 490-522 177-205 (227)
278 3e6c_C CPRK, cyclic nucleotide 55.9 9.7 0.00033 35.7 4.3 29 490-522 176-204 (250)
279 1sd4_A Penicillinase repressor 55.7 9.7 0.00033 32.0 3.9 42 470-514 6-51 (126)
280 1fx7_A Iron-dependent represso 55.6 4 0.00014 38.9 1.5 42 471-513 3-46 (230)
281 2ek5_A Predicted transcription 55.4 10 0.00036 33.0 4.1 29 489-521 25-54 (129)
282 3deu_A Transcriptional regulat 55.4 1.1E+02 0.0037 26.9 11.3 66 350-423 28-93 (166)
283 2vn2_A DNAD, chromosome replic 55.2 12 0.00041 32.4 4.5 44 471-514 29-74 (128)
284 3bro_A Transcriptional regulat 54.9 76 0.0026 26.4 9.6 66 351-423 10-75 (141)
285 1j9i_A GPNU1 DBD;, terminase s 54.9 5.8 0.0002 30.5 2.1 24 492-515 3-26 (68)
286 3bdn_A Lambda repressor; repre 54.9 6.9 0.00024 36.8 3.1 26 489-514 28-53 (236)
287 3rkx_A Biotin-[acetyl-COA-carb 54.8 8.6 0.00029 39.0 3.9 41 474-515 3-43 (323)
288 1r71_A Transcriptional repress 54.8 13 0.00044 34.6 4.8 41 470-513 34-74 (178)
289 3qwg_A ESX-1 secretion-associa 54.7 8.4 0.00029 33.5 3.3 25 489-513 22-51 (123)
290 3neu_A LIN1836 protein; struct 54.6 12 0.00041 32.3 4.3 29 489-521 34-63 (125)
291 2jvl_A TRMBF1; coactivator, he 54.5 7.2 0.00024 32.6 2.8 24 490-513 48-71 (107)
292 2bnm_A Epoxidase; oxidoreducta 54.4 9.6 0.00033 34.7 3.9 26 489-514 21-46 (198)
293 1v4r_A Transcriptional repress 54.3 4.2 0.00014 33.6 1.3 29 489-521 32-61 (102)
294 3uj3_X DNA-invertase; helix-tu 54.2 2.7 9.1E-05 38.9 0.0 35 476-515 148-182 (193)
295 2da1_A Alpha-fetoprotein enhan 54.0 23 0.0008 27.1 5.5 52 472-523 14-66 (70)
296 1y9q_A Transcriptional regulat 53.8 9.7 0.00033 34.7 3.8 26 489-514 22-47 (192)
297 3by6_A Predicted transcription 53.8 9.3 0.00032 33.1 3.5 29 489-521 32-61 (126)
298 3c7j_A Transcriptional regulat 53.7 12 0.00042 35.7 4.6 30 488-521 46-75 (237)
299 3oop_A LIN2960 protein; protei 53.5 78 0.0027 26.6 9.5 64 351-423 13-76 (143)
300 1d5y_A ROB transcription facto 53.2 58 0.002 31.1 9.5 38 383-420 4-41 (292)
301 2p5t_A Putative transcriptiona 53.0 2.9 9.8E-05 37.5 0.0 26 489-514 12-37 (158)
302 3k2a_A Homeobox protein MEIS2; 52.9 32 0.0011 26.4 6.1 55 471-525 4-62 (67)
303 3a03_A T-cell leukemia homeobo 52.7 21 0.00073 26.2 4.9 51 471-521 3-54 (56)
304 1k78_A Paired box protein PAX5 52.7 73 0.0025 27.4 9.3 26 399-424 49-74 (149)
305 1y6u_A XIS, excisionase from t 52.6 8 0.00027 30.5 2.6 25 490-514 15-39 (70)
306 2hwv_A DNA-binding response re 52.5 30 0.001 29.6 6.5 50 471-521 43-97 (121)
307 1zyb_A Transcription regulator 52.4 11 0.00039 34.9 4.1 28 491-522 186-213 (232)
308 2y75_A HTH-type transcriptiona 52.3 12 0.0004 32.1 3.9 29 489-521 24-52 (129)
309 3r1f_A ESX-1 secretion-associa 52.3 9.8 0.00034 33.5 3.4 25 489-513 24-53 (135)
310 3k2z_A LEXA repressor; winged 52.1 21 0.00073 32.9 5.9 40 383-422 9-48 (196)
311 2k02_A Ferrous iron transport 52.1 9.2 0.00031 31.6 3.0 24 490-513 15-38 (87)
312 2ecc_A Homeobox and leucine zi 51.9 18 0.00063 29.0 4.6 51 472-522 10-61 (76)
313 2v79_A DNA replication protein 51.8 16 0.00055 32.3 4.7 47 471-517 29-77 (135)
314 2vz4_A Tipal, HTH-type transcr 51.7 8.3 0.00028 32.4 2.7 26 491-516 1-26 (108)
315 4a0z_A Transcription factor FA 51.5 13 0.00045 34.7 4.4 35 474-511 12-46 (190)
316 3e7l_A Transcriptional regulat 51.5 13 0.00044 28.1 3.5 23 491-513 32-54 (63)
317 1hkq_A REPA, replication prote 51.2 33 0.0011 29.8 6.7 59 464-522 11-78 (132)
318 1yz8_P Pituitary homeobox 2; D 50.8 47 0.0016 25.2 6.8 52 472-523 10-62 (68)
319 3nrv_A Putative transcriptiona 50.6 75 0.0026 26.8 8.9 75 337-423 4-79 (148)
320 2k9l_A RNA polymerase sigma fa 50.6 38 0.0013 26.7 6.4 51 458-511 15-68 (76)
321 1bia_A BIRA bifunctional prote 50.4 20 0.0007 35.9 5.9 41 472-515 3-43 (321)
322 2k4j_A Putative transcriptiona 49.7 22 0.00077 30.1 5.2 50 471-521 41-95 (115)
323 3oou_A LIN2118 protein; protei 49.6 25 0.00087 28.8 5.5 27 489-515 19-45 (108)
324 1stz_A Heat-inducible transcri 49.5 19 0.00064 36.7 5.5 41 472-513 15-60 (338)
325 2l1p_A DNA-binding protein SAT 49.2 11 0.00036 31.0 2.8 24 491-514 32-55 (83)
326 3mn2_A Probable ARAC family tr 49.1 25 0.00086 28.8 5.3 27 489-515 16-42 (108)
327 3lsg_A Two-component response 49.1 26 0.00091 28.4 5.4 25 491-515 19-43 (103)
328 2pg4_A Uncharacterized protein 49.0 15 0.00053 29.5 3.9 25 490-514 29-54 (95)
329 3bpv_A Transcriptional regulat 48.7 92 0.0031 25.7 9.1 64 351-423 5-68 (138)
330 2p4w_A Transcriptional regulat 48.6 15 0.0005 34.7 4.2 37 473-513 14-50 (202)
331 1ais_B TFB TFIIB, protein (tra 48.6 1.6E+02 0.0054 26.8 18.3 177 301-519 9-193 (200)
332 3kcc_A Catabolite gene activat 48.5 14 0.00048 35.0 4.2 28 491-522 217-244 (260)
333 2qq9_A Diphtheria toxin repres 48.5 6 0.0002 37.7 1.5 43 471-514 3-47 (226)
334 2h09_A Transcriptional regulat 48.2 12 0.0004 32.9 3.3 25 490-514 53-77 (155)
335 2ofy_A Putative XRE-family tra 48.1 11 0.00039 29.4 2.9 22 493-514 29-50 (86)
336 3plo_X DNA-invertase; resolvas 48.0 3.8 0.00013 38.0 0.0 31 489-519 156-186 (193)
337 2h8r_A Hepatocyte nuclear fact 47.9 28 0.00096 33.6 6.1 24 490-513 43-66 (221)
338 1k61_A Mating-type protein alp 47.6 32 0.0011 25.4 5.2 51 471-521 4-58 (60)
339 3hrs_A Metalloregulator SCAR; 47.1 17 0.0006 34.1 4.5 28 489-516 18-45 (214)
340 1vz0_A PARB, chromosome partit 47.1 21 0.00073 34.2 5.2 41 470-513 116-156 (230)
341 2f2e_A PA1607; transcription f 47.0 23 0.00078 31.3 5.0 24 490-513 36-59 (146)
342 1hw1_A FADR, fatty acid metabo 47.0 16 0.00054 34.4 4.2 30 488-521 27-57 (239)
343 1puf_B PRE-B-cell leukemia tra 46.7 32 0.0011 26.6 5.3 56 471-526 7-66 (73)
344 2bgc_A PRFA; bacterial infecti 46.0 13 0.00045 34.6 3.4 28 491-522 169-197 (238)
345 3fx3_A Cyclic nucleotide-bindi 45.4 13 0.00043 34.4 3.2 29 490-522 177-205 (237)
346 4bbr_M Transcription initiatio 45.3 76 0.0026 32.2 9.3 36 489-524 290-325 (345)
347 1ahd_P Antennapedia protein mu 45.3 49 0.0017 25.2 6.1 53 472-524 9-62 (68)
348 2dmu_A Homeobox protein goosec 45.1 28 0.00096 26.7 4.7 52 472-523 14-66 (70)
349 2e1o_A Homeobox protein PRH; D 44.9 28 0.00095 26.7 4.6 52 472-523 14-66 (70)
350 3a02_A Homeobox protein arista 44.4 29 0.001 25.7 4.5 51 472-522 6-57 (60)
351 1jgs_A Multiple antibiotic res 44.4 1.1E+02 0.0037 25.4 8.8 65 350-423 9-73 (138)
352 2dmq_A LIM/homeobox protein LH 44.3 31 0.001 27.1 4.9 53 472-524 14-67 (80)
353 3rjp_A COVR; winged helix-turn 44.3 43 0.0015 26.9 5.9 50 471-521 22-76 (96)
354 1gxq_A PHOB, phosphate regulon 44.3 30 0.001 28.4 5.1 49 472-521 32-85 (106)
355 2qlz_A Transcription factor PF 44.2 35 0.0012 32.9 6.2 25 489-513 176-200 (232)
356 2k40_A Homeobox expressed in E 44.0 34 0.0012 26.0 4.9 53 472-524 8-61 (67)
357 3edp_A LIN2111 protein; APC883 43.9 21 0.00071 34.1 4.5 29 489-521 30-59 (236)
358 1b72_B Protein (PBX1); homeodo 43.9 37 0.0013 27.1 5.5 55 471-525 7-65 (87)
359 1r8d_A Transcription activator 43.9 10 0.00035 31.9 2.1 25 492-516 3-27 (109)
360 3pvv_A Chromosomal replication 43.6 47 0.0016 27.9 6.2 33 489-521 48-80 (101)
361 2hdd_A Protein (engrailed home 43.3 33 0.0011 25.5 4.7 50 472-521 10-60 (61)
362 3oio_A Transcriptional regulat 43.2 24 0.00083 29.2 4.4 27 489-515 21-47 (113)
363 2k9m_A RNA polymerase sigma fa 43.2 64 0.0022 28.2 7.2 54 461-521 9-65 (130)
364 2jrt_A Uncharacterized protein 43.2 10 0.00035 31.7 1.9 27 489-515 47-73 (95)
365 2fa5_A Transcriptional regulat 43.2 1.6E+02 0.0053 25.2 10.6 27 397-423 62-88 (162)
366 1ig7_A Homeotic protein MSX-1; 43.1 33 0.0011 25.1 4.6 50 472-521 7-57 (58)
367 2fbh_A Transcriptional regulat 43.1 1.4E+02 0.0049 24.7 11.8 28 396-423 50-77 (146)
368 1jgg_A Segmentation protein EV 43.0 34 0.0011 25.4 4.7 50 472-521 8-58 (60)
369 2rdp_A Putative transcriptiona 42.9 1.5E+02 0.0051 24.9 10.5 26 398-423 56-81 (150)
370 1ntc_A Protein (nitrogen regul 42.7 14 0.00046 30.2 2.6 36 475-513 51-86 (91)
371 2wv0_A YVOA, HTH-type transcri 42.7 23 0.0008 33.9 4.7 30 489-522 31-61 (243)
372 3bja_A Transcriptional regulat 42.6 91 0.0031 25.7 8.1 26 398-423 47-72 (139)
373 2fsw_A PG_0823 protein; alpha- 42.5 15 0.0005 30.5 2.8 41 469-513 19-61 (107)
374 1x2n_A Homeobox protein pknox1 42.5 21 0.00073 27.6 3.6 53 472-524 14-70 (73)
375 3sxy_A Transcriptional regulat 42.5 16 0.00056 34.0 3.5 37 479-521 25-61 (218)
376 2jml_A DNA binding domain/tran 42.5 14 0.00049 29.2 2.7 24 491-514 5-28 (81)
377 2pmu_A Response regulator PHOP 42.4 31 0.0011 28.7 4.9 50 471-521 34-88 (110)
378 3s2w_A Transcriptional regulat 42.4 1.6E+02 0.0055 25.1 10.2 65 350-423 25-89 (159)
379 3bwg_A Uncharacterized HTH-typ 42.2 23 0.00079 33.8 4.6 30 489-522 26-56 (239)
380 3dn7_A Cyclic nucleotide bindi 42.0 9.3 0.00032 34.1 1.6 25 490-514 167-191 (194)
381 2k9s_A Arabinose operon regula 41.9 33 0.0011 28.1 4.9 26 490-515 19-44 (107)
382 3e6m_A MARR family transcripti 41.9 1.2E+02 0.004 26.2 8.9 26 398-423 67-92 (161)
383 1x3u_A Transcriptional regulat 41.7 57 0.002 24.7 6.1 36 389-424 22-57 (79)
384 2ovg_A Phage lambda CRO; trans 41.5 21 0.00071 27.7 3.4 20 493-512 15-34 (66)
385 3rqi_A Response regulator prot 41.5 19 0.00063 32.0 3.6 38 472-512 140-177 (184)
386 1zq3_P PRD-4, homeotic bicoid 41.3 53 0.0018 25.0 5.7 53 472-524 9-62 (68)
387 4aik_A Transcriptional regulat 40.9 1.8E+02 0.006 25.2 11.3 29 395-423 43-71 (151)
388 1rp3_A RNA polymerase sigma fa 40.8 2E+02 0.007 25.9 15.3 36 254-289 100-135 (239)
389 2dmn_A Homeobox protein TGIF2L 40.8 54 0.0018 26.2 5.9 54 472-525 14-71 (83)
390 2cue_A Paired box protein PAX6 40.3 46 0.0016 26.2 5.4 52 472-523 14-66 (80)
391 1b0n_A Protein (SINR protein); 40.1 23 0.00078 28.8 3.7 23 399-421 15-37 (111)
392 3eet_A Putative GNTR-family tr 39.9 26 0.0009 34.3 4.6 29 489-521 50-79 (272)
393 3jw4_A Transcriptional regulat 39.7 88 0.003 26.5 7.6 27 397-423 56-82 (148)
394 1s3j_A YUSO protein; structura 39.6 1.5E+02 0.005 25.0 9.1 26 398-423 51-76 (155)
395 2h1k_A IPF-1, pancreatic and d 39.5 44 0.0015 25.0 4.9 51 472-522 10-61 (63)
396 2obp_A Putative DNA-binding pr 39.2 43 0.0015 28.0 5.2 45 470-514 12-59 (96)
397 1opc_A OMPR, OMPRC; transcript 39.2 23 0.00078 29.4 3.5 50 471-521 31-85 (110)
398 3ivp_A Putative transposon-rel 39.1 61 0.0021 27.1 6.4 79 398-483 25-105 (126)
399 4dyq_A Gene 1 protein; GP1, oc 39.0 20 0.00067 31.6 3.2 38 474-515 15-53 (140)
400 1lj9_A Transcriptional regulat 38.9 1.7E+02 0.0057 24.3 9.9 64 351-423 5-68 (144)
401 1fjl_A Paired protein; DNA-bin 38.8 58 0.002 25.6 5.8 52 472-523 25-77 (81)
402 1nk2_P Homeobox protein VND; h 38.7 44 0.0015 26.1 5.0 55 472-526 16-71 (77)
403 1umq_A Photosynthetic apparatu 38.5 20 0.00067 29.1 2.9 22 491-512 54-75 (81)
404 3iuo_A ATP-dependent DNA helic 38.3 45 0.0015 28.7 5.4 35 477-516 23-57 (122)
405 1p4x_A Staphylococcal accessor 38.2 36 0.0012 33.0 5.3 43 471-514 155-197 (250)
406 2da2_A Alpha-fetoprotein enhan 38.1 23 0.00079 27.1 3.1 52 472-523 14-66 (70)
407 2fjr_A Repressor protein CI; g 38.0 27 0.00094 31.4 4.2 22 493-514 22-43 (189)
408 1akh_A Protein (mating-type pr 37.8 30 0.001 25.6 3.7 48 471-518 11-59 (61)
409 2di3_A Bacterial regulatory pr 37.8 27 0.00093 33.0 4.3 37 479-521 17-54 (239)
410 2a61_A Transcriptional regulat 37.7 1.3E+02 0.0046 24.9 8.4 26 398-423 47-72 (145)
411 4fe7_A Xylose operon regulator 37.7 3E+02 0.01 27.5 12.5 39 383-421 306-344 (412)
412 3nau_A Zinc fingers and homeob 37.5 28 0.00094 27.3 3.4 49 474-522 13-62 (66)
413 2oa4_A SIR5; structure, struct 37.5 11 0.00037 32.1 1.2 35 478-516 41-75 (101)
414 3hot_A Transposable element ma 37.4 26 0.00089 34.6 4.2 36 476-515 11-53 (345)
415 3k0l_A Repressor protein; heli 37.3 1.5E+02 0.0052 25.4 9.0 66 349-423 20-85 (162)
416 3f8m_A GNTR-family protein tra 37.3 25 0.00086 33.8 4.0 32 486-521 30-62 (248)
417 1uhs_A HOP, homeodomain only p 37.2 76 0.0026 24.3 6.1 52 472-523 8-61 (72)
418 2hs5_A Putative transcriptiona 37.2 22 0.00075 33.9 3.5 31 487-521 47-77 (239)
419 3t8r_A Staphylococcus aureus C 36.7 33 0.0011 30.2 4.3 24 490-513 27-50 (143)
420 3vpr_A Transcriptional regulat 36.5 26 0.0009 30.7 3.7 24 489-512 21-44 (190)
421 3bj6_A Transcriptional regulat 36.3 1.8E+02 0.0062 24.3 9.1 26 398-423 54-79 (152)
422 1yyv_A Putative transcriptiona 36.3 24 0.00083 30.6 3.3 25 490-514 47-72 (131)
423 3bqz_B HTH-type transcriptiona 36.2 26 0.00088 30.5 3.6 24 488-511 19-42 (194)
424 1iuf_A Centromere ABP1 protein 36.1 17 0.00058 32.1 2.3 44 471-516 11-61 (144)
425 3qkx_A Uncharacterized HTH-typ 36.0 29 0.00099 29.9 3.9 25 487-511 24-48 (188)
426 3rkq_A Homeobox protein NKX-2. 36.0 48 0.0017 24.0 4.5 48 472-519 9-57 (58)
427 3mkl_A HTH-type transcriptiona 36.0 37 0.0013 28.4 4.4 26 489-514 21-46 (120)
428 3egq_A TETR family transcripti 35.8 28 0.00097 29.8 3.8 24 488-511 21-44 (170)
429 2fq4_A Transcriptional regulat 35.8 27 0.00093 30.8 3.7 24 489-512 30-53 (192)
430 2zcm_A Biofilm operon icaabcd 35.7 26 0.0009 30.7 3.6 23 489-511 25-47 (192)
431 3ihu_A Transcriptional regulat 35.7 24 0.00083 32.9 3.5 37 479-521 29-65 (222)
432 2nnn_A Probable transcriptiona 35.6 1.8E+02 0.0063 23.8 10.3 65 350-424 14-78 (140)
433 1b72_A Protein (homeobox prote 35.6 63 0.0021 26.4 5.7 53 471-523 40-93 (97)
434 3cjn_A Transcriptional regulat 35.5 1.4E+02 0.0047 25.6 8.3 26 398-423 66-91 (162)
435 3df8_A Possible HXLR family tr 35.5 35 0.0012 28.5 4.2 24 490-513 39-65 (111)
436 2eh3_A Transcriptional regulat 35.4 28 0.00097 30.2 3.7 23 489-511 20-42 (179)
437 2hi3_A Homeodomain-only protei 35.2 82 0.0028 24.2 6.0 52 472-523 9-62 (73)
438 3lwf_A LIN1550 protein, putati 35.2 42 0.0015 30.3 4.9 29 489-521 42-70 (159)
439 3t72_q RNA polymerase sigma fa 35.2 1.7E+02 0.0059 24.1 8.4 26 397-422 38-63 (99)
440 3zq7_A KDP operon transcriptio 35.0 53 0.0018 26.6 5.1 50 471-521 28-82 (102)
441 2dn0_A Zinc fingers and homeob 34.8 31 0.0011 27.0 3.5 52 472-523 15-67 (76)
442 1le8_B Mating-type protein alp 34.8 35 0.0012 27.2 3.8 57 472-528 9-69 (83)
443 2jzy_A Transcriptional regulat 34.7 32 0.0011 28.8 3.8 48 472-520 29-81 (112)
444 1ylf_A RRF2 family protein; st 34.6 36 0.0012 30.0 4.2 29 489-521 28-56 (149)
445 2p7v_B Sigma-70, RNA polymeras 34.6 84 0.0029 23.4 5.9 27 397-423 24-50 (68)
446 3f2g_A Alkylmercury lyase; MER 34.4 38 0.0013 32.6 4.6 29 395-423 33-61 (220)
447 1ftt_A TTF-1 HD, thyroid trans 34.3 54 0.0018 24.9 4.7 53 472-524 9-62 (68)
448 2heo_A Z-DNA binding protein 1 34.0 47 0.0016 25.3 4.3 30 395-424 22-51 (67)
449 2yu3_A DNA-directed RNA polyme 33.9 36 0.0012 28.5 3.8 46 470-520 33-78 (95)
450 2dmt_A Homeobox protein BARH-l 33.9 32 0.0011 27.2 3.4 51 472-522 24-75 (80)
451 1ku3_A Sigma factor SIGA; heli 33.8 76 0.0026 24.0 5.6 26 397-422 29-54 (73)
452 1hqc_A RUVB; extended AAA-ATPa 33.5 44 0.0015 32.3 5.1 44 471-514 244-287 (324)
453 3ppb_A Putative TETR family tr 33.4 33 0.0011 29.7 3.8 25 487-511 25-49 (195)
454 2lk2_A Homeobox protein TGIF1; 33.4 57 0.002 26.9 4.9 53 472-524 12-68 (89)
455 3knw_A Putative transcriptiona 33.2 2.4E+02 0.0082 24.4 10.1 78 265-342 29-108 (212)
456 2da3_A Alpha-fetoprotein enhan 33.2 23 0.0008 27.8 2.5 30 494-523 47-76 (80)
457 3knw_A Putative transcriptiona 33.1 32 0.0011 30.4 3.7 23 489-511 32-54 (212)
458 3ktb_A Arsenical resistance op 33.0 20 0.00069 30.7 2.2 18 395-412 88-105 (106)
459 1bl0_A Protein (multiple antib 32.9 37 0.0013 28.8 3.9 27 489-515 25-51 (129)
460 2dms_A Homeobox protein OTX2; 32.8 42 0.0015 26.4 4.0 53 472-524 14-67 (80)
461 3lwj_A Putative TETR-family tr 32.7 32 0.0011 30.1 3.7 23 489-511 30-52 (202)
462 1eto_A FIS, factor for inversi 32.7 1.6E+02 0.0055 24.3 7.7 23 491-513 71-93 (98)
463 3kz9_A SMCR; transcriptional r 32.6 33 0.0011 29.9 3.7 25 487-511 33-57 (206)
464 2pjp_A Selenocysteine-specific 32.6 74 0.0025 26.9 5.8 26 490-515 19-44 (121)
465 2k4b_A Transcriptional regulat 32.5 11 0.00036 31.7 0.3 43 469-514 30-76 (99)
466 1puf_A HOX-1.7, homeobox prote 32.3 67 0.0023 25.0 5.1 53 472-524 20-73 (77)
467 2cra_A Homeobox protein HOX-B1 32.3 26 0.0009 26.9 2.6 51 472-522 14-65 (70)
468 2ly9_A Zinc fingers and homeob 32.3 38 0.0013 26.2 3.5 55 472-526 13-68 (74)
469 2wui_A MEXZ, transcriptional r 32.2 34 0.0012 30.6 3.8 24 489-512 29-52 (210)
470 3tgn_A ADC operon repressor AD 32.0 1.7E+02 0.006 24.3 8.2 83 399-483 52-137 (146)
471 1b8i_A Ultrabithorax, protein 32.0 53 0.0018 26.0 4.5 52 471-522 26-78 (81)
472 3vp5_A Transcriptional regulat 31.8 36 0.0012 30.1 3.8 23 489-511 30-52 (189)
473 3k69_A Putative transcription 31.7 25 0.00086 31.8 2.8 29 489-521 26-54 (162)
474 1z6r_A MLC protein; transcript 31.7 62 0.0021 32.9 6.1 38 477-517 19-56 (406)
475 1o5l_A Transcriptional regulat 31.4 24 0.00081 32.1 2.6 28 490-521 163-190 (213)
476 2htj_A P fimbrial regulatory p 31.2 62 0.0021 25.1 4.7 27 398-424 14-40 (81)
477 3hug_A RNA polymerase sigma fa 31.0 61 0.0021 25.8 4.8 28 396-423 51-78 (92)
478 3lhq_A Acrab operon repressor 30.9 37 0.0012 29.9 3.7 23 489-511 32-54 (220)
479 3pxp_A Helix-turn-helix domain 30.8 47 0.0016 33.1 4.8 25 490-514 24-48 (292)
480 1hsj_A Fusion protein consisti 30.8 47 0.0016 34.4 5.1 51 462-513 390-442 (487)
481 2qtq_A Transcriptional regulat 30.7 37 0.0013 29.8 3.7 24 488-511 33-56 (213)
482 2qww_A Transcriptional regulat 30.6 1.6E+02 0.0056 24.8 7.9 26 398-423 55-80 (154)
483 3vib_A MTRR; helix-turn-helix 30.6 36 0.0012 30.3 3.7 27 482-511 24-50 (210)
484 3f1b_A TETR-like transcription 30.5 35 0.0012 29.7 3.5 24 488-511 31-54 (203)
485 3bru_A Regulatory protein, TET 30.5 39 0.0013 30.1 3.8 25 487-511 46-70 (222)
486 2d6y_A Putative TETR family re 30.5 37 0.0013 30.3 3.7 24 489-512 26-49 (202)
487 3kgk_A Arsenical resistance op 30.4 23 0.0008 30.5 2.1 19 395-413 85-103 (110)
488 3cta_A Riboflavin kinase; stru 30.3 29 0.001 32.7 3.1 29 486-514 22-50 (230)
489 1tty_A Sigma-A, RNA polymerase 30.2 88 0.003 24.6 5.6 27 397-423 37-63 (87)
490 3kkc_A TETR family transcripti 30.1 35 0.0012 29.3 3.4 23 488-510 29-51 (177)
491 3dew_A Transcriptional regulat 30.0 29 0.001 30.2 2.9 24 489-512 26-49 (206)
492 2nx4_A Transcriptional regulat 30.0 38 0.0013 29.9 3.7 23 489-511 28-50 (194)
493 2yve_A Transcriptional regulat 30.0 41 0.0014 29.5 3.9 23 489-511 22-44 (185)
494 2dmp_A Zinc fingers and homeob 29.9 64 0.0022 26.1 4.7 51 472-522 20-71 (89)
495 3dcf_A Transcriptional regulat 29.9 40 0.0014 29.7 3.8 25 487-511 47-71 (218)
496 2zhg_A Redox-sensitive transcr 29.8 25 0.00084 31.7 2.3 27 490-516 10-36 (154)
497 2g7s_A Transcriptional regulat 29.8 30 0.001 29.9 2.9 24 488-511 25-48 (194)
498 2dg7_A Putative transcriptiona 29.7 30 0.001 30.4 2.9 24 489-512 25-48 (195)
499 1pb6_A Hypothetical transcript 29.7 37 0.0013 29.9 3.5 23 489-511 36-58 (212)
500 1tc3_C Protein (TC3 transposas 29.6 77 0.0026 21.0 4.5 24 399-422 22-45 (51)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=5.4e-53 Score=450.95 Aligned_cols=309 Identities=30% Similarity=0.472 Sum_probs=276.8
Q ss_pred HHHHhhccC-CCCCCchHHHHHHhhchHHHHHHHHHHH------------------HHHHhCCCCchHHHHHH-------
Q 009449 225 AERALNSRG-RRLTIARNEAEMSKGVQVVANLERIKTT------------------LEKESGKAASLNCWAQA------- 278 (534)
Q Consensus 225 ~~~~~~~~~-~~lLt~~eE~~L~~~iq~~~~le~~~~~------------------l~~~~g~~ps~~ewa~a------- 278 (534)
++-|++..+ .||||++||++|+++|+.+..++..... .....++.|+..+|+..
T Consensus 96 ~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (438)
T 1l9z_H 96 VRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEEVD 175 (438)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhhhhh
Confidence 344554444 6999999999999999998655432211 12234677888887432
Q ss_pred -----cCCCHHHHHHHHHhcHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHH
Q 009449 279 -----AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353 (534)
Q Consensus 279 -----~g~d~~~L~~~l~~G~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~ 353 (534)
.+++...|...++.|..|+++||.+|+++|++||++|.++|.+++|||||||+|||+|+++|||.+|++|+|||+
T Consensus 176 ~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTYA~ 255 (438)
T 1l9z_H 176 GKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYAT 255 (438)
T ss_pred hhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHHHH
Confidence 245667888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcC--CCHHHHHHHHHHhhhhcccccc
Q 009449 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVGSIDQK 431 (534)
Q Consensus 354 ~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lg--is~~kv~~~l~~~~~~~SLD~~ 431 (534)
||||+.|.++++++.|++++|.|+.+.+++++++.+.+.+.+||.|+.+|||+.+| +++++|..++.....++|+|.+
T Consensus 256 ~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd~~ 335 (438)
T 1l9z_H 256 WWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETP 335 (438)
T ss_pred HHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999888889999999
Q ss_pred cccchhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 432 IGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 432 i~~~~~~~l~e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
++++++..+.+.+++....+|++.+....+...|..+|+.||++||+||.+||||+|++++|++|||+.||||++||||+
T Consensus 336 ~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi 415 (438)
T 1l9z_H 336 IGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQI 415 (438)
T ss_pred cccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 98777777888888776678999998889999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHH-hHhhhhcchhhhc
Q 009449 512 EKKAMTKLR-DSETCRDLSHFLV 533 (534)
Q Consensus 512 ~~RAL~KLR-~~l~~~~L~~yl~ 533 (534)
+++|++||| +.+....|++|+.
T Consensus 416 ~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 416 ENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHhHhhHHHHHHhhC
Confidence 999999999 8888889999974
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=6.8e-53 Score=449.83 Aligned_cols=311 Identities=30% Similarity=0.476 Sum_probs=271.0
Q ss_pred HHHHHHhhccC-CCCCCchHHHHHHhhchHHHHHHHHHHHH------------------HHHhCCCCchHHHH-------
Q 009449 223 FSAERALNSRG-RRLTIARNEAEMSKGVQVVANLERIKTTL------------------EKESGKAASLNCWA------- 276 (534)
Q Consensus 223 ~~~~~~~~~~~-~~lLt~~eE~~L~~~iq~~~~le~~~~~l------------------~~~~g~~ps~~ewa------- 276 (534)
+.++-|+...+ .||||++||++|+++|+.+..+....... ....++.|+..+|+
T Consensus 79 d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (423)
T 2a6h_F 79 DPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEE 158 (423)
T ss_dssp HHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHHHHH
T ss_pred cHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhhhhh
Confidence 44555664444 69999999999999999986544322110 01223556654433
Q ss_pred --H---HcCCCHHHHHHHHHhcHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhH
Q 009449 277 --Q---AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351 (534)
Q Consensus 277 --~---a~g~d~~~L~~~l~~G~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTY 351 (534)
. +.+++...|...++.|..|+++||.+|+++|++||++|.++|.+++||+||||+|||+|+++|||.+|++|+||
T Consensus 159 ~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~FstY 238 (423)
T 2a6h_F 159 IDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 238 (423)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCHHHH
T ss_pred hhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCHHHH
Confidence 2 34566788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcC--CCHHHHHHHHHHhhhhcccc
Q 009449 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVGSID 429 (534)
Q Consensus 352 A~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lg--is~~kv~~~l~~~~~~~SLD 429 (534)
|+||||++|.++++++.|++++|.|+.+.+++++++.+.+.+.+||.|+.+|||+.+| +++++|..++.....++|+|
T Consensus 239 a~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~Sld 318 (423)
T 2a6h_F 239 ATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE 318 (423)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCEESS
T ss_pred HHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999998888899999
Q ss_pred cccccchhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHH
Q 009449 430 QKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIR 509 (534)
Q Consensus 430 ~~i~~~~~~~l~e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVR 509 (534)
.+++++++..+.+.+++....+|++.+....+...|..+|+.||++||+||.+||||+|++++|++|||+.||||++||+
T Consensus 319 ~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVr 398 (423)
T 2a6h_F 319 TPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIR 398 (423)
T ss_dssp CBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHH
T ss_pred cccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHH
Confidence 99988777778888888766789999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hHhhhhcchhhhc
Q 009449 510 KLEKKAMTKLR-DSETCRDLSHFLV 533 (534)
Q Consensus 510 qi~~RAL~KLR-~~l~~~~L~~yl~ 533 (534)
|++++|++||| +......|++|++
T Consensus 399 qi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 399 QIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 99999999999 8888899999974
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=4.3e-43 Score=389.91 Aligned_cols=251 Identities=30% Similarity=0.576 Sum_probs=238.6
Q ss_pred HHHHHHHHHhc-HHH---HHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHH
Q 009449 283 ERVLKQHLAFG-WYC---REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358 (534)
Q Consensus 283 ~~~L~~~l~~G-~~A---~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~ 358 (534)
...|..+++.| ..| ++.||..|.++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|+||++|||||
T Consensus 358 ~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn 437 (613)
T 3iyd_F 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 (613)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHH
Confidence 45677788888 445 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhh
Q 009449 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNA 438 (534)
Q Consensus 359 aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~ 438 (534)
+|.++++++.+++|+|.|+.+.+++++++.+.+.+++||.||.+|||+.+|+++++++.++...+.++|+|.+++++.+.
T Consensus 438 ~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~ 517 (613)
T 3iyd_F 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 (613)
T ss_dssp HHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSC
T ss_pred HHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred hhhhccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009449 439 KYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518 (534)
Q Consensus 439 ~l~e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~K 518 (534)
.+.+.+++....+|++.+...++...|..+|+.|||++|+||.|+||+++++++|++|||+.||||++||++++++|+++
T Consensus 518 ~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~k 597 (613)
T 3iyd_F 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 597 (613)
T ss_dssp CGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTT
T ss_pred cHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 88899988877899999998888889999999999999999999999888799999999999999999999999999999
Q ss_pred HHhHhhhhcchhhhc
Q 009449 519 LRDSETCRDLSHFLV 533 (534)
Q Consensus 519 LR~~l~~~~L~~yl~ 533 (534)
||+++....|+.|++
T Consensus 598 LR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 598 LRHPSRSEVLRSFLD 612 (613)
T ss_dssp TTSCSSSCSSTTCC-
T ss_pred hhCcchhhHHHHHhc
Confidence 999999999999986
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=1.5e-34 Score=287.69 Aligned_cols=207 Identities=25% Similarity=0.384 Sum_probs=124.8
Q ss_pred hHHHHHHhhccC-CCCCCchHHHHHHhhchHHHHHH-HHHHHH-------HHH------------------hCCCCchHH
Q 009449 222 IFSAERALNSRG-RRLTIARNEAEMSKGVQVVANLE-RIKTTL-------EKE------------------SGKAASLNC 274 (534)
Q Consensus 222 ~~~~~~~~~~~~-~~lLt~~eE~~L~~~iq~~~~le-~~~~~l-------~~~------------------~g~~ps~~e 274 (534)
.|.++-|++..+ .||||++||++|+++|+.++... .+.... .+. .+.+|+..+
T Consensus 6 ~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~ 85 (245)
T 3ugo_A 6 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVE 85 (245)
T ss_dssp CHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHHH
T ss_pred CCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhHH
Confidence 455666776666 69999999999999999987633 222110 000 136788999
Q ss_pred HHHHcCCCH----HHHHHHHHhcHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhh
Q 009449 275 WAQAAGVSE----RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350 (534)
Q Consensus 275 wa~a~g~d~----~~L~~~l~~G~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFST 350 (534)
||.+.+++. ..|.+.++.|..|+++||+.|.++|+++|++|.+++.+++||+||||+|||+++++|||++|++|+|
T Consensus 86 ~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~t 165 (245)
T 3ugo_A 86 EVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 165 (245)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHH
T ss_pred HHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHHH
Confidence 999988753 4556667778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcC--CCHHHHHHHHHHhhhhccc
Q 009449 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVGSI 428 (534)
Q Consensus 351 YA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lg--is~~kv~~~l~~~~~~~SL 428 (534)
|++||||++|.++++++.+.+++|.++.+.++++.++.+.+.+.+|+.||.+|||+.|| ||+++|...+..++.++||
T Consensus 166 ya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~lsl 245 (245)
T 3ugo_A 166 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 245 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999888877775
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=100.00 E-value=1.4e-32 Score=265.56 Aligned_cols=222 Identities=21% Similarity=0.315 Sum_probs=197.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHHHHHHHHhccc
Q 009449 294 WYCREELIKSTRPLVLFLARNYR---GLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARG 370 (534)
Q Consensus 294 ~~A~e~LI~~nlrLV~sIArrY~---~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI~~~lr~~sr~ 370 (534)
..|++.|+..|.++|+++|++|. +++.+++||+|||++++|+++++|||.+|.+|+||+++||++.+.++++++.
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 34899999999999999999998 6789999999999999999999999999999999999999999999999875
Q ss_pred cccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh--hhcccccccccchhhhhhhccCCCC
Q 009449 371 IKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR--IVGSIDQKIGDCLNAKYLEFAPDRS 448 (534)
Q Consensus 371 iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~--~~~SLD~~i~~~~~~~l~e~i~d~~ 448 (534)
+.|.++.....++.++...+.+.+|+.|+.+++|+.+|++++++..++.... ...|+|.++.++++.. .+. +++
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~- 164 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS- 164 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-
Confidence 5788888899999999999999999999999999999999999998876553 4467777665443333 444 333
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhh
Q 009449 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525 (534)
Q Consensus 449 ~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~ 525 (534)
..+|++.+...+....|..+|..|||++|+||.++| ++++|++|||+.||||.++|++++++|+++||+.+..
T Consensus 165 ~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 165 STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIF----YEELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH----TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 357888888888899999999999999999999999 8999999999999999999999999999999998753
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.97 E-value=1.4e-31 Score=258.23 Aligned_cols=227 Identities=26% Similarity=0.383 Sum_probs=53.5
Q ss_pred CHHHHHHHHHhc-HHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHH
Q 009449 282 SERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360 (534)
Q Consensus 282 d~~~L~~~l~~G-~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI 360 (534)
+...|...++.| ..|++.|+..|.++|+++|++|.++..+++|++|||++++|+++++|||.+|..|.||+++|+++.+
T Consensus 14 ~~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~ 93 (243)
T 1l0o_C 14 EMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEI 93 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 345677777777 6799999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchh--h
Q 009449 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLN--A 438 (534)
Q Consensus 361 ~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~--~ 438 (534)
.++++++. .+++|.++.....+++++...+.+..|+.|+.++++..+|++.+.+...+.....+.|++.++.++++ .
T Consensus 94 ~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 172 (243)
T 1l0o_C 94 QRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPI 172 (243)
T ss_dssp ------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------------
T ss_pred HHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCccc
Confidence 99999986 78999999999999999999999999999999999999999999999888777778888877654322 2
Q ss_pred hhhhccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009449 439 KYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518 (534)
Q Consensus 439 ~l~e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~K 518 (534)
++.+.+ |++.+...+....|..+|..||+++|+||.|+| ++++|++|||+.||||.++|++++++|+++
T Consensus 173 ~~~~~~-------~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 173 TLLDQI-------ADADEASWFDKIALKKAIEELDERERLIVYLRY----YKDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhcc-------CcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH----hcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 223322 233344445667889999999999999999999 799999999999999999999999999999
Q ss_pred HH
Q 009449 519 LR 520 (534)
Q Consensus 519 LR 520 (534)
||
T Consensus 242 Lr 243 (243)
T 1l0o_C 242 IK 243 (243)
T ss_dssp --
T ss_pred cC
Confidence 97
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.90 E-value=1.8e-23 Score=196.32 Aligned_cols=179 Identities=16% Similarity=0.221 Sum_probs=139.1
Q ss_pred HHHHHHHHHhc-HHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHHH
Q 009449 283 ERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361 (534)
Q Consensus 283 ~~~L~~~l~~G-~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI~ 361 (534)
+..|...++.| ..|++.|+..|.+.|+++|++|.+ ..+++|++||+++++|+++++|++.. .|.+|++.+++|.+.
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 56677888888 789999999999999999999999 99999999999999999999999875 599999999999999
Q ss_pred HHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhhhhh
Q 009449 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYL 441 (534)
Q Consensus 362 ~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~~l~ 441 (534)
+++++..+..... ++.. . ....++.+
T Consensus 87 d~~R~~~~~~~~~----------------------------~~~~-----------~-----~~~~~~~~---------- 112 (194)
T 1or7_A 87 NYLVAQGRRPPSS----------------------------DVDA-----------I-----EAENFESG---------- 112 (194)
T ss_dssp HHHHHHTTCCTHH----------------------------HHHH-----------H-----HHHSCCSS----------
T ss_pred HHHHHHhccCccc----------------------------cccc-----------c-----cccccccc----------
Confidence 9999875422110 0000 0 00011100
Q ss_pred hccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 442 EFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 442 e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+.+++ ..+|++.+...+....|..+|..||+++|+||.|+| .+++|++|||+.||+|..+|+++++||+++||+
T Consensus 113 ~~~~~--~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 113 GALKE--ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRE----LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CC----------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHH----TTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccC--CCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 00111 123444444455667888999999999999999999 899999999999999999999999999999998
Q ss_pred Hhh
Q 009449 522 SET 524 (534)
Q Consensus 522 ~l~ 524 (534)
.+.
T Consensus 187 ~l~ 189 (194)
T 1or7_A 187 KVQ 189 (194)
T ss_dssp HHC
T ss_pred HHH
Confidence 864
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.90 E-value=8e-24 Score=197.38 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=147.3
Q ss_pred CCHHHHHHH-HHhc-HHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHH
Q 009449 281 VSERVLKQH-LAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358 (534)
Q Consensus 281 ~d~~~L~~~-l~~G-~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~ 358 (534)
++...|... +..| ..|++.|+..|.+.|+.+|+++.++..+++|++||+++.+|+++++|++..| .|.+|++.++++
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 567778888 8887 7899999999999999999999999999999999999999999999999876 899999999999
Q ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhh
Q 009449 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNA 438 (534)
Q Consensus 359 aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~ 438 (534)
.+.+++++..+...+ +..
T Consensus 90 ~~~d~~R~~~~~~~~-------------------------------------------------------~~~------- 107 (184)
T 2q1z_A 90 RRIDGLRKDRQPEPE-------------------------------------------------------DLF------- 107 (184)
T ss_dssp SCCTTTCSSSCCCCC-------------------------------------------------------CCC-------
T ss_pred HHHHHHHhhcccccc-------------------------------------------------------ccc-------
Confidence 999998765432111 000
Q ss_pred hhhhccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009449 439 KYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518 (534)
Q Consensus 439 ~l~e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~K 518 (534)
...+ ...+|++.+...+....|..+|..||+++|+||.|+| .+++|++|||+.||||..+|++++++|+++
T Consensus 108 ----~~~~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~eIA~~lgis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 108 ----WGPD-SEPDQADVYEMQQENARLGRAIARLPEAQRALIERAF----FGDLTHRELAAETGLPLGTIKSRIRLALDR 178 (184)
T ss_dssp ----CCSS-CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH----HSCCSSCCSTTTCCCCCHHHHHHHHHHHHH
T ss_pred ----ccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 0011 1246788888888888999999999999999999999 899999999999999999999999999999
Q ss_pred HHhHh
Q 009449 519 LRDSE 523 (534)
Q Consensus 519 LR~~l 523 (534)
||+.+
T Consensus 179 Lr~~l 183 (184)
T 2q1z_A 179 LRQHM 183 (184)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99865
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.88 E-value=3.4e-22 Score=181.49 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCC
Q 009449 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398 (534)
Q Consensus 319 g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~ 398 (534)
|.+++|++|||++++|+++.+||+.+ .+|.||+++++++.+.++++++.+..+.|..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 57899999999999999999999987 6999999999999999999987643333211
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhhhhh----hccCCCCCCChHHHHHHHHHHHHHHHHHh-hCC
Q 009449 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYL----EFAPDRSVKSPKEIVMRQHMKKDVFRILE-SLD 473 (534)
Q Consensus 399 Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~~l~----e~i~d~~~~spee~v~~~el~e~L~~~L~-~L~ 473 (534)
.+.+.+.+..++....+. +.+. ....+|++.+...+....|..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYK-SSESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 011222222111111111 1111 122467888888888899999999 999
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhc
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~ 527 (534)
|++|+||. +| .+|+|++|||+.||||.++|+++++||+++||+.+...+
T Consensus 112 ~~~r~v~~-~~----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 112 KFEKEVLT-YL----IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHHHHHH-HH----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 67 799999999999999999999999999999999887654
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.74 E-value=4.9e-20 Score=169.78 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=120.1
Q ss_pred HHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHHHHHHHHhccccccccc
Q 009449 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCK 376 (534)
Q Consensus 297 ~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI~~~lr~~sr~iRlP~~ 376 (534)
++.|+..|.+.|+.+|.++.++..+++|++||+|+.+|++.++|++.. .|.+|++..++|.+.+++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCc-------
Confidence 567899999999999999999999999999999999999999999764 69999999999999999865310
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhhhhhhccCCCCCCChHHHH
Q 009449 377 LNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIV 456 (534)
Q Consensus 377 ~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~~l~e~i~d~~~~spee~v 456 (534)
+ +.+ ++.
T Consensus 74 ----------------------~-----------------------------~~~-------------~e~--------- 80 (157)
T 2lfw_A 74 ----------------------Q-----------------------------TSQ-------------SDA--------- 80 (157)
T ss_dssp ----------------------C-----------------------------CCC-------------CSC---------
T ss_pred ----------------------c-----------------------------cCC-------------cch---------
Confidence 0 000 000
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhc
Q 009449 457 MRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527 (534)
Q Consensus 457 ~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~ 527 (534)
.+....|..+|..||+++|+||.|+| .+|+|++|||+.||||..+|++.+.||+++||+.+....
T Consensus 81 --~~~~~~l~~~l~~Lp~~~r~vl~L~~----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~ 145 (157)
T 2lfw_A 81 --EGTEAVARARLARMTPLSRQALLLTA----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALE 145 (157)
T ss_dssp --SSSSSTTTTTTTTSCTTHHHHHTTTS----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00112466788999999999999999 899999999999999999999999999999999876543
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.66 E-value=5.2e-16 Score=160.38 Aligned_cols=85 Identities=34% Similarity=0.792 Sum_probs=79.1
Q ss_pred HHHHHHHHhc-H---HHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHH
Q 009449 284 RVLKQHLAFG-W---YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359 (534)
Q Consensus 284 ~~L~~~l~~G-~---~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~a 359 (534)
..|..+++.| . .|++.||..|.++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 4567777777 5 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 009449 360 ISKMVARHA 368 (534)
Q Consensus 360 I~~~lr~~s 368 (534)
|+++++++.
T Consensus 330 ~~~~lr~~~ 338 (339)
T 1sig_A 330 ITRSIADQA 338 (339)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999999865
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.60 E-value=7.7e-16 Score=155.45 Aligned_cols=141 Identities=11% Similarity=0.014 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHHHHHHHHhcccccc
Q 009449 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373 (534)
Q Consensus 294 ~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI~~~lr~~sr~iRl 373 (534)
..+|+.|+..|.+.++.+|.+|.++..+++|++||+|+.+|+...+|++. ..|.+|++.+++|.+.++++....
T Consensus 20 ~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~---- 93 (286)
T 3n0r_A 20 EMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEV---- 93 (286)
T ss_dssp CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC--------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhcccccc----
Confidence 45899999999999999999999999999999999999999999999875 369999999999999887652100
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhhhhhhccCCCCCCChH
Q 009449 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPK 453 (534)
Q Consensus 374 P~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~~l~e~i~d~~~~spe 453 (534)
.. . .+..
T Consensus 94 -----------------------------------------------------~~------~---------~~~~----- 100 (286)
T 3n0r_A 94 -----------------------------------------------------GH------D---------QGLH----- 100 (286)
T ss_dssp -----------------------------------------------------CC------C---------CCCC-----
T ss_pred -----------------------------------------------------CC------C---------cccc-----
Confidence 00 0 0000
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 454 e~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
....|..+|+.||+++|+||.|+| .+++|++|||+.+|++..+|+....+|+++|+..+.
T Consensus 101 -------~~~~l~~al~~Lp~~~R~v~~L~~----~eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 101 -------AGDDAAQRLMRIAPRSRQAFLLTA----LEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp -------TTSHHHHHHHHHSCHHHHHHHHHH----TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred -------hHHHHHHHHHhCCHHHeeEEEEEe----eCCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 012478899999999999999999 999999999999999999999999999999997654
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.53 E-value=2.2e-14 Score=123.67 Aligned_cols=80 Identities=31% Similarity=0.516 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhcchhhhc
Q 009449 454 EIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533 (534)
Q Consensus 454 e~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~L~~yl~ 533 (534)
+.+...++...|..+|+.|||+||+||.|+||++|.+++|++|||+.||||++||++++.+|+++||..+....|++|+.
T Consensus 2 ~~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~ 81 (99)
T 3t72_q 2 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSS 81 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999998899999999999999999999999999999999999999999974
No 14
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.32 E-value=1e-12 Score=104.61 Aligned_cols=66 Identities=41% Similarity=0.677 Sum_probs=62.3
Q ss_pred HHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhcchhhhc
Q 009449 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLV 533 (534)
Q Consensus 468 ~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~L~~yl~ 533 (534)
+|+.|||+|++||.++||+++++++|++|||+.||+|+++|++++.+|+++||..+....+..|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999998899999999999999999999999999999999999999988874
No 15
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.32 E-value=9.5e-12 Score=104.72 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=70.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhc
Q 009449 449 VKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527 (534)
Q Consensus 449 ~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~ 527 (534)
..+|++.+...+....|..+|..||+++|+||.|+| .+++|++|||+.||||..+|++++++|+++||..+...+
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSY----YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH----TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 358999999999999999999999999999999999 899999999999999999999999999999999987654
No 16
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.31 E-value=2.9e-12 Score=107.05 Aligned_cols=70 Identities=43% Similarity=0.754 Sum_probs=65.0
Q ss_pred HHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhcchhhh
Q 009449 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532 (534)
Q Consensus 463 e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~L~~yl 532 (534)
..|..+|+.|||++|+||.++|+|++.+++|++|||+.||+|+++|++++.+|+++||..+....+..|+
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~ 79 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLL 79 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3678899999999999999999888779999999999999999999999999999999999888887775
No 17
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.30 E-value=1.1e-12 Score=105.83 Aligned_cols=70 Identities=41% Similarity=0.650 Sum_probs=56.0
Q ss_pred HHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-hHhhhhcchhhhc
Q 009449 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR-DSETCRDLSHFLV 533 (534)
Q Consensus 464 ~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR-~~l~~~~L~~yl~ 533 (534)
.|..+|+.|||+|++||.++|+|+|.+++|++|||+.||+|+++|++++.+|+++|| ..+....+++|+.
T Consensus 3 ~l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~~ 73 (73)
T 1ku3_A 3 ELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE 73 (73)
T ss_dssp CCSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhhC
Confidence 345678899999999999999888779999999999999999999999999999999 8888888888863
No 18
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.02 E-value=6.5e-10 Score=95.83 Aligned_cols=82 Identities=18% Similarity=0.100 Sum_probs=71.6
Q ss_pred HHHHHHHhc-HHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHHHHH
Q 009449 285 VLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKM 363 (534)
Q Consensus 285 ~L~~~l~~G-~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI~~~ 363 (534)
.|...+..| ..|++.|+..|.+.|+.+|.++ ++..+++|++||+++.+|+.+.+|++. ..|.+|++..++|.+.++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 566677777 7899999999999999999999 888999999999999999999999974 379999999999999999
Q ss_pred HHHhcc
Q 009449 364 VARHAR 369 (534)
Q Consensus 364 lr~~sr 369 (534)
+++..+
T Consensus 90 ~R~~~~ 95 (112)
T 2o7g_A 90 IRHVRS 95 (112)
T ss_dssp TC----
T ss_pred HHHhhc
Confidence 987654
No 19
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=6.7e-10 Score=87.64 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhcc
Q 009449 460 HMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528 (534)
Q Consensus 460 el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~L 528 (534)
+....+..+++.|||++++||.++| .+++|++|||+.||+|+.+|+++.++|+++||..+....+
T Consensus 4 e~~~~l~~~l~~L~~~~r~il~l~~----~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 4 EDLVEVTTMIADLTTDQREALLLTQ----LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHHTTTTSSCHHHHHHHHHHH----TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3445788899999999999999999 8999999999999999999999999999999998876543
No 20
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.91 E-value=1.1e-09 Score=90.26 Aligned_cols=73 Identities=8% Similarity=-0.039 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHHHHHHHHhc
Q 009449 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368 (534)
Q Consensus 294 ~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI~~~lr~~s 368 (534)
..|++.|+..|.+.|+.+|.++.++..+++|++||+++.+|+...+|++. ..|.+|++.+++|.+.++++++.
T Consensus 11 ~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 11 SARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999999999999999999999999999875 37999999999999999987654
No 21
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.85 E-value=8.1e-09 Score=90.62 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHH-hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhcc
Q 009449 456 VMRQHMKKDVFRIL-ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528 (534)
Q Consensus 456 v~~~el~e~L~~~L-~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~L 528 (534)
+........+..++ ..|||++++||.++| .+++|++|||+.||+|..+|+.+++||+++||..+...++
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 78 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFY----LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL 78 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHH----TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445566788899 999999999999999 8999999999999999999999999999999998876554
No 22
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.75 E-value=8.5e-12 Score=123.78 Aligned_cols=155 Identities=10% Similarity=-0.001 Sum_probs=113.3
Q ss_pred HHHHHHHhc-HHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHHhhhccCCcCCCchhhHHHHHHHHH
Q 009449 285 VLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLL----QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359 (534)
Q Consensus 285 ~L~~~l~~G-~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLi----QEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~a 359 (534)
.|..++..+ ..+++.+...+.++++.+............|+. ||.++.+|+....|++.. .|.+|++..+++.
T Consensus 86 ~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~ 163 (258)
T 3clo_A 86 CIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSL 163 (258)
T ss_dssp HHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEE
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHH
Confidence 455555555 568999999999999999988877777888886 999999999999998754 6888888777665
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhhh
Q 009449 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAK 439 (534)
Q Consensus 360 I~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~~ 439 (534)
+.+..+... + ...+......
T Consensus 164 ~~d~~r~~~----~-------------------------------------------------------~~~~~~~~~~- 183 (258)
T 3clo_A 164 SADQRPEQG----I-------------------------------------------------------YATITQMERG- 183 (258)
T ss_dssp CSCCCCCSS----C-------------------------------------------------------CCEEEETTTT-
T ss_pred HcchhhhhH----H-------------------------------------------------------HHHHHhhccc-
Confidence 554421100 0 0000000000
Q ss_pred hhhccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009449 440 YLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519 (534)
Q Consensus 440 l~e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KL 519 (534)
+... .+ .+..++..||++||+||.|++ +|+|.+|||+.||+|..||+.+++||++||
T Consensus 184 --~~~~-----~~-----------~~~~~~~~L~~~erevl~L~~-----~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 184 --EVET-----LS-----------LSEEHRNILSEREKEILRCIR-----KGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp --EEEE-----CC-----------CHHHHTTSSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred --cccc-----ch-----------hhHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 0000 00 134567899999999999976 899999999999999999999999999999
Q ss_pred HhHhh
Q 009449 520 RDSET 524 (534)
Q Consensus 520 R~~l~ 524 (534)
|....
T Consensus 241 ~~~~~ 245 (258)
T 3clo_A 241 SVGNS 245 (258)
T ss_dssp TCSSH
T ss_pred cCCCH
Confidence 97544
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.68 E-value=4.8e-08 Score=85.78 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=57.3
Q ss_pred HHHHHHHH-hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhcc
Q 009449 462 KKDVFRIL-ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528 (534)
Q Consensus 462 ~e~L~~~L-~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~L 528 (534)
...+..++ ..|||++++|+.++| .+|+|++|||+.+|+|+.+|+.++++|+++||..+...++
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y----~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYY----ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHH----HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44677788 899999999999999 8999999999999999999999999999999998876554
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.57 E-value=2.4e-08 Score=83.63 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 457 MRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 457 ~~~el~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
........+..++..|+++|++||.+++ +|+|.+|||+.||||..||+.++.+|++||+....
T Consensus 15 ~~~~~~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 15 PRGSHMKKRAELYEMLTEREMEILLLIA-----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp ----------CTGGGCCSHHHHHHHHHH-----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 3334455788899999999999999954 89999999999999999999999999999986543
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.50 E-value=1.5e-07 Score=76.02 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=51.3
Q ss_pred HHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 463 KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 463 e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+.+..++..||++|++|+.+ | .+++|.+|||+.||+|..+|+++..++++||+....
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l-~----~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSA-V----VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHH-H----TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHhCCHHHHHHHHH-H----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 35778899999999999999 5 489999999999999999999999999999996543
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.50 E-value=1.4e-07 Score=79.83 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhh
Q 009449 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525 (534)
Q Consensus 461 l~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~ 525 (534)
....|..++..|+++|++||.+++ +|+|++|||+.||+|..||+.++.++++||+.....
T Consensus 17 ~~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 17 RGSHMQDPLSGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp ----------CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 344678899999999999999965 899999999999999999999999999999975443
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.43 E-value=1.5e-07 Score=81.22 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHH-hhCCHHHHHHHhhHhcCCC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 456 VMRQHMKKDVFRIL-ESLDSRERQVLVLRYGLND---HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 456 v~~~el~e~L~~~L-~~L~~rEReVL~LryGL~d---~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+......+.+...+ ..|+|+|+++|.+||||.+ ..++|+.|||+.+|+|+++|+.+ .|++++|...+.
T Consensus 19 i~~~~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 19 LKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HHHHHHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred HHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 33334445566777 5799999999999999974 44699999999999999999999 899999887654
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.39 E-value=1.8e-07 Score=77.05 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=49.3
Q ss_pred HHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhh
Q 009449 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525 (534)
Q Consensus 464 ~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~ 525 (534)
.+..++..|+++|++||.+ | .+|+|.+|||+.||||..+|+.++.+|++||+.....
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l-~----~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 70 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKL-I----AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRV 70 (82)
T ss_dssp ---CCGGGSCHHHHHHHHH-H----TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHccCCHHHHHHHHH-H----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 4567789999999999999 4 4899999999999999999999999999999876543
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.24 E-value=7.9e-07 Score=70.51 Aligned_cols=56 Identities=29% Similarity=0.334 Sum_probs=47.3
Q ss_pred HHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 464 ~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
.....+..|+++|++|+.+ | .+++|.+|||+.||+|+.+|+++..++++||+....
T Consensus 4 ~~~~~~~~L~~~e~~il~~-~----~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 59 (74)
T 1fse_A 4 KEFQSKPLLTKREREVFEL-L----VQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGR 59 (74)
T ss_dssp ----CCCCCCHHHHHHHHH-H----TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSH
T ss_pred CcCCCCCCCCHHHHHHHHH-H----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Confidence 3445678899999999999 5 478999999999999999999999999999986544
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=98.08 E-value=4.6e-06 Score=70.11 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=44.3
Q ss_pred HHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 467 RILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 467 ~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.....|+++|++|+.+.+ +|+|.+|||+.||||..||+.++.++++||.-.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp ----CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 346789999999999987 899999999999999999999999999999743
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.93 E-value=5.8e-06 Score=63.30 Aligned_cols=45 Identities=29% Similarity=0.312 Sum_probs=41.0
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
|+|++|+.+ + .+|+|.+|||+.||+|..+|+.+..++++||+..-
T Consensus 1 ~re~~vl~l-~----~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 1 LRERQVLKL-I----DEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp CHHHHHHHH-H----HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHH-H----HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 579999999 5 58999999999999999999999999999998643
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.90 E-value=1.4e-05 Score=68.50 Aligned_cols=48 Identities=31% Similarity=0.263 Sum_probs=44.4
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
..|+++|++||.+.+ +++|.+|||+.||||..||+..+.++++||.-.
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 669999999999965 799999999999999999999999999999753
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.52 E-value=0.00012 Score=70.99 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=43.8
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.|+++|++|+.+.+ +|+|.+|||++||||..||+.++.++++||.-.
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 59999999999965 899999999999999999999999999999753
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.50 E-value=0.00013 Score=70.77 Aligned_cols=47 Identities=26% Similarity=0.228 Sum_probs=43.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.|+++|++|+.+.+ +|+|.+|||++||||..||+.++.++++||.-.
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 59999999999964 899999999999999999999999999999743
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.40 E-value=0.00038 Score=67.84 Aligned_cols=48 Identities=27% Similarity=0.323 Sum_probs=44.3
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
..|+++|++|+.+.. +|+|.+|||+.||||..||+.++.++++||.-.
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSS 221 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 469999999999976 899999999999999999999999999998643
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.24 E-value=0.0003 Score=69.88 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=44.2
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.|+++|++|+.+.. +|+|.+|||++||||..||+.++.++++||.-.
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 69999999999987 899999999999999999999999999999753
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.99 E-value=0.00078 Score=48.05 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=33.3
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.++..+...| .+++|..|||+.||||+.||+.++.+
T Consensus 5 ~l~~~~~~~i~~~~----~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMK----LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 47888886666666 57899999999999999999987754
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.73 E-value=0.003 Score=54.27 Aligned_cols=46 Identities=2% Similarity=0.021 Sum_probs=43.0
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR 520 (534)
.+++.-..|-.++| .+|+|+.|||+.||||+.+|.+++.+|...+-
T Consensus 18 ~~~~~~~~~A~lyY----v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVL----VDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHH----TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 68888899999999 99999999999999999999999999998764
No 39
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.58 E-value=0.0045 Score=57.25 Aligned_cols=51 Identities=25% Similarity=0.286 Sum_probs=45.6
Q ss_pred HHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 466 FRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 466 ~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
...+..|+++|++|+.+.. +++|.+|||+.+|+|..||+.+..++++||..
T Consensus 137 ~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 137 EQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp HHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 4445679999999998875 78999999999999999999999999999964
No 40
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.31 E-value=0.0061 Score=56.76 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=43.5
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
..|+++|.+|+.+.. +++|.+|||+.+++|..||+.+..+.++||.-
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 459999999999886 78999999999999999999999999999964
No 41
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.21 E-value=0.0033 Score=46.82 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=29.9
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
++..+.|+.+ + ..++|..|||+.||||+.||+.++.+|
T Consensus 18 ~~~~~~i~~l-~----~~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 18 DDLVSVAHEL-A----KMGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHH-H----HTTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred HHHHHHHHHH-H----HcCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 4455666666 5 478999999999999999999987654
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.02 E-value=0.0084 Score=56.72 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=43.2
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
..|+++|++|+.+.. +++|.+|||+.+++|..||+....+.++||.-
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 469999999999876 78999999999999999999999999999864
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.39 E-value=0.014 Score=55.06 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=42.7
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
..|+++|.+|+.+.. +++|.+|||+.+++|..||+.+..+.++||.-
T Consensus 158 ~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 158 AKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred ccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 469999999999864 78999999999999999999999999999853
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=95.04 E-value=0.056 Score=51.38 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 461 l~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
........+..|++++++|+.+.. .+++.++||..+|+|..+|+....++++||.-.
T Consensus 188 ~~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~~~ 244 (258)
T 3p7n_A 188 RRERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLK 244 (258)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 345677888999999999999876 689999999999999999999999999998643
No 45
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.45 E-value=0.061 Score=50.00 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=42.4
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH---VSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg---ISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|.+|+.+.. -+.++.+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 145 ~Lt~rE~~vl~~l~-~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLA-ENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 49999999998765 11123499999999999 9999999999999999974
No 46
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.21 E-value=0.058 Score=38.51 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=25.9
Q ss_pred HHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 477 ReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+.|+.+ + ..+.|..|||+.+|||+.||..++.+
T Consensus 12 ~~i~~l-~----~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRL-L----EKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-H----HTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-H----HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345555 4 35699999999999999999987653
No 47
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=93.18 E-value=0.085 Score=49.94 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=41.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|.+||.+.. -+.++.+|.+|||+.+ ++|..||+....+.++||..
T Consensus 153 ~LT~rE~~vL~~l~-~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALA-RKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHH-HCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 49999999998776 1112349999999999 99999999999999999964
No 48
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=92.92 E-value=0.075 Score=49.65 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=42.6
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|.+|+.+.. -+.++.+|.+|||+.+ ++|..||+.+..+.++||..
T Consensus 156 ~Lt~rE~~vL~~l~-~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLM-RNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHH-hCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 49999999998776 1123459999999999 99999999999999999964
No 49
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=92.53 E-value=0.09 Score=48.81 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=42.2
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH-----VSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg-----ISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|.+|+.+.. -+.+..+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~-~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLV-MNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHH-hCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 49999999998765 11123499999999998 9999999999999999974
No 50
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.25 E-value=0.11 Score=41.90 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=29.3
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+.++.||.+..-...+++.|..|||+.+|||+.+|++++.
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~ 53 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 53 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3456676665544434579999999999999999976543
No 51
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=92.09 E-value=0.088 Score=49.17 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=41.4
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH-----VSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg-----ISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|.+|+.+..- +.+..+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 499999999988761 1123399999999998 9999999999999999975
No 52
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.63 E-value=0.24 Score=40.52 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=31.1
Q ss_pred HHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 475 rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
.++.||.+......+...|..|||+.||||+.+|+ +++.+|.+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~----~~L~~Le~ 53 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEIN----RVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 35556665554444568999999999999999986 45666654
No 53
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.54 E-value=0.034 Score=54.63 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHH
Q 009449 464 DVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH--VSKEWIRKLEKKAMTKLR 520 (534)
Q Consensus 464 ~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg--ISrerVRqi~~RAL~KLR 520 (534)
.+...+..|++.++.+ ...| +.+.|.+|||+.|| ||.++|+.++.+|++.|.
T Consensus 191 ~l~e~i~~l~~~~~~L-~~~~----~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 191 HMVETINKLSRTARQL-QQEL----GREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-HHHh----CCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 3455667788888874 4566 57889999999999 999999999999988763
No 54
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.38 E-value=0.19 Score=43.55 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=33.4
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.++..|...+ ..|.|..+||+.||||+.||+.+..+
T Consensus 6 ~~s~~~r~~i~~~~----~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMK----LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 46777777666666 57899999999999999999988765
No 55
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=91.33 E-value=0.17 Score=44.58 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=29.2
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRK 510 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRq 510 (534)
..|+.| .+|+.+.. +++|+.|||+.+|+|..||..
T Consensus 60 ~aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsR 94 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISR 94 (119)
T ss_dssp HHHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHH
Confidence 456666 67888865 789999999999999999975
No 56
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=91.20 E-value=0.27 Score=41.50 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=32.3
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
.+++.++.-+...+ ..++|..+||+.||||+.||+.++.+..
T Consensus 17 ~~s~~~r~~i~~~~----~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMA----ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35665555554445 4689999999999999999999987753
No 57
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=90.58 E-value=0.26 Score=46.81 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=29.6
Q ss_pred HHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 477 ReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
..+..+ | ..|+|+.|||+.||||+.+|.+++..|.
T Consensus 15 ~ria~~-y----~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 15 LRLMRM-K----NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHH-H----HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHH-H----HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 445555 6 5789999999999999999999988875
No 58
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=90.42 E-value=0.077 Score=49.43 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=42.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH-----VSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg-----ISrerVRqi~~RAL~KLR~~ 522 (534)
.|+++|.+|+.+..- +.++..|.+|||+.++ +|..||+.+..+.++||...
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~~ 198 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKP 198 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhcC
Confidence 499999999988750 0012299999999999 99999999999999999853
No 59
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=90.33 E-value=0.16 Score=48.80 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=42.6
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHHHhH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGK-----LFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~-----~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.|+++|.+||.+.. -+.++.+|.+|||+ .++++..||+.+..+.++||...
T Consensus 182 ~LT~rE~evL~ll~-~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~~ 237 (249)
T 3q9s_A 182 RLSPKEFDILALLI-RQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDL 237 (249)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhcC
Confidence 49999999999886 11234599999999 58889999999999999999743
No 60
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=89.42 E-value=0.44 Score=42.16 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=32.9
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
.+++.++.-|...+ ..+.|..+||+.||||+.||+.++.+..
T Consensus 32 ~~s~e~r~~iv~~~----~~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELA----HQGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35666665555555 4689999999999999999999988754
No 61
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=89.34 E-value=0.48 Score=45.08 Aligned_cols=50 Identities=16% Similarity=0.012 Sum_probs=43.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|.+||.+.. -+.++..|.+||++.+ +++..+|+.+..+.++||..
T Consensus 176 ~LT~rE~~iL~~l~-~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 49999999998886 2335679999999999 78999999999999999964
No 62
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=89.00 E-value=0.32 Score=40.09 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+.|..|||+.||||+.+|++++.+
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3499999999999999999887654
No 63
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.74 E-value=0.57 Score=38.13 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
.+.|..+||+.+||++.+|+++..+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999886544
No 64
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.62 E-value=0.55 Score=36.58 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=29.6
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+++...+||.+.- .+..+.|..|||+.+|+|+.+|.+ .++.|++
T Consensus 8 m~~~~~~IL~~L~--~~~~~~s~~eLA~~lglsr~tv~~----~l~~L~~ 51 (67)
T 2heo_A 8 GDNLEQKILQVLS--DDGGPVAIFQLVKKCQVPKKTLNQ----VLYRLKK 51 (67)
T ss_dssp -CHHHHHHHHHHH--HHCSCEEHHHHHHHHCSCHHHHHH----HHHHHHH
T ss_pred ccHHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3444555655543 113578999999999999999964 5556664
No 65
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.60 E-value=0.92 Score=39.30 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=37.3
Q ss_pred HHHhhCCHHHHHHHhhHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 467 RILESLDSRERQVLVLRYGLNDHRP-KSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 467 ~~L~~L~~rEReVL~LryGL~d~e~-~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
...-.|++.+..|+.....- ..+ .|..|||+.+|++++||. |++++|.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~~--~~~~~t~~eLa~~l~~s~sTV~----r~L~~L~~ 68 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLNE--PDRWIDTDALSKSLKLDVSTVQ----RSVKKLHE 68 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHHS--TTCCEEHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHC--CCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 44567999999999876621 223 899999999999999996 55566654
No 66
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=87.36 E-value=0.63 Score=46.82 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.8
Q ss_pred HHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009449 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMT 517 (534)
Q Consensus 477 ReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~ 517 (534)
..|..|+| .++.|.+|||+.||||+.|||..+..+.+
T Consensus 11 ~~ia~l~~----~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 11 VKIAQLYY----EQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHH----TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34778888 78999999999999999999988776644
No 67
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.49 E-value=1.1 Score=36.56 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=32.7
Q ss_pred HhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 469 L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
...|++.+..+|...+. ...+.|..|||+.+|+|+.+|++++
T Consensus 16 ~~~l~~~~~~~l~~l~~--~~~~~t~~ela~~l~is~~tv~~~l 57 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVE--IEKPITSEELADIFKLSKTTVENSL 57 (109)
T ss_dssp HHTCCHHHHHHHHHHHH--HCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45789998888765541 1357999999999999999997544
No 68
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.18 E-value=1.2 Score=36.62 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=29.6
Q ss_pred CCHHHHH-HHhhHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 472 LDSRERQ-VLVLRYGLNDHR-PKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 472 L~~rERe-VL~LryGL~d~e-~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
.++..+. |+.++. .. +.|..+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~----~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYE----NSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHT----TGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----HcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555554 444443 23 7899999999999999999987654
No 69
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=85.74 E-value=0.68 Score=43.30 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=32.5
Q ss_pred hCCHHHHHHHhhHhcCC--CCCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLN--DHRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~--d~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
.|+++|++|+....-.- .+.+.|..|||+.||++..+|+.++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 58999999998754221 1357899999999999999876544
No 70
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=85.57 E-value=1.3 Score=38.21 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=32.1
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..||...+ ..+.|..|||+.+|+++.+|++++.+
T Consensus 35 ~lt~~~~~iL~~l~----~~~~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLS----EESLTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHT----TCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----hCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 47888888887776 33499999999999999999765443
No 71
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=85.57 E-value=1.7 Score=37.16 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCHHHHHHHhhHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 463 KDVFRILESLDSRERQVLVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 463 e~L~~~L~~L~~rEReVL~LryGL-~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..|......|++.|+.|......= +....+|..|||+..|||..||...-+
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHH
Confidence 456777789999999998766510 011369999999999999999986553
No 72
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.38 E-value=2.2 Score=35.55 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=33.0
Q ss_pred HHHHHHhhCC-HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 464 DVFRILESLD-SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 464 ~L~~~L~~L~-~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.+...+..|. +....||.+.. ..+.|..|||+.+|+|+.+|++++.
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~----~~~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS----VSEASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH----HCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444555554 55667776655 3578999999999999999976543
No 73
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=85.37 E-value=10 Score=31.25 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 009449 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (534)
Q Consensus 384 i~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~ 421 (534)
+.++..-+.......++.++||+.+|+++..+......
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44555556666777899999999999999999877653
No 74
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=84.81 E-value=2.8 Score=34.14 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=33.3
Q ss_pred HHHHHhhC-CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 465 VFRILESL-DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 465 L~~~L~~L-~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+..++..| +|....||.+-. ..+.|..|||+.+|+|+.+|+++ +++|++
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~----~~~~~~~ela~~l~is~~tvs~~----L~~L~~ 62 (98)
T 3jth_A 13 AVVLLKAMANERRLQILCMLH----NQELSVGELCAKLQLSQSALSQH----LAWLRR 62 (98)
T ss_dssp HHHHHHHHCSHHHHHHHHHTT----TSCEEHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh----cCCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 33444444 455566665544 26899999999999999999754 455554
No 75
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.70 E-value=1.5 Score=35.49 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=29.3
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
++.+..|+.... .+.+.|..|||+.+|+|+.+|++++.
T Consensus 23 ~~~~~~il~~l~---~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 23 HPKRLLILCMLS---GSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp SHHHHHHHHHHT---TCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHH---hCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 467777776554 24579999999999999999976543
No 76
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=84.35 E-value=1.5 Score=38.73 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=31.7
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.|++.++.||.+... ....|..|||+.+|+|+.+|+.++.
T Consensus 2 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 41 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK---DSRLSMRELGRKIKLSPPSVTERVR 41 (144)
T ss_dssp CCCHHHHHHHHHHHH---CSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 378888888876541 3579999999999999999975543
No 77
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=83.92 E-value=0.47 Score=42.57 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
++..++.-|...+ ..+.|..+||+.||||+.||+.++.+
T Consensus 26 ~s~e~r~~ii~l~----~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 26 LPEVVRQRIVDLA----HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SCHHHHHHHHHHH----HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5555555554455 36799999999999999999998765
No 78
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=83.81 E-value=2.4 Score=34.87 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=33.5
Q ss_pred HHHHHhhC-CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 465 VFRILESL-DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 465 L~~~L~~L-~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+..++..| +|.-..||.+.. ..+.|..|||+.+|+|+.+|+++ +++|++
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~----~~~~~~~ela~~l~is~~tvs~~----L~~L~~ 62 (102)
T 3pqk_A 13 VANLLKTLSHPVRLMLVCTLV----EGEFSVGELEQQIGIGQPTLSQQ----LGVLRE 62 (102)
T ss_dssp HHHHHHHHCSHHHHHHHHHHH----TCCBCHHHHHHHHTCCTTHHHHH----HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 34444444 455566666554 35799999999999999999764 445543
No 79
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=83.77 E-value=3.5 Score=35.32 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.6
Q ss_pred HHHHHH--hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 464 DVFRIL--ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 464 ~L~~~L--~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+...+ ..|++.+..||...+ ..+.|..|||+.+|+++.+|..++.+
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 25 ELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHH
Confidence 344444 359999999988776 46899999999999999999765443
No 80
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=83.60 E-value=13 Score=30.60 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHcCCCHHHHHHHHHH
Q 009449 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASEC 421 (534)
Q Consensus 384 i~ka~~~L~~elG-r~Pt~eEIA~~lgis~~kv~~~l~~ 421 (534)
+.++..-+.+... ..++.++||+.+|+++..+......
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4555556666676 7899999999999999999877653
No 81
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=83.60 E-value=10 Score=31.51 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHh
Q 009449 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (534)
Q Consensus 383 ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~ 422 (534)
.+.++..-+.......++.++||+.+|+++..+.......
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455555566666778999999999999999998876533
No 82
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=83.58 E-value=1.9 Score=38.07 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=32.2
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..|++.++.||.+.. .....|..|||+.+|+|+.+|+.++.
T Consensus 5 ~~ld~~d~~il~~L~---~~~~~s~~ela~~lg~s~~tv~~~l~ 45 (151)
T 2dbb_A 5 RKLDRVDMQLVKILS---ENSRLTYRELADILNTTRQRIARRID 45 (151)
T ss_dssp -CCCHHHHHHHHHHH---HCTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 348899999887654 13579999999999999999975543
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=83.54 E-value=1.1 Score=33.65 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=25.8
Q ss_pred CCCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 490 RPKS----LEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 490 e~~S----l~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
.+.| ..+||..+||++++|+++... ...+|..+
T Consensus 20 ~g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 20 NDNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp HCTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred cCCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 4568 999999999999999999764 45555443
No 84
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=83.33 E-value=1.5 Score=35.52 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.2
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.|++.+..|+..... ..+.|..|||+.+|+++.+|++++.
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 578988888876641 3579999999999999999975543
No 85
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=83.17 E-value=14 Score=30.54 Aligned_cols=39 Identities=8% Similarity=-0.082 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHh
Q 009449 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (534)
Q Consensus 384 i~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~ 422 (534)
+.++..-+.......++.++||+.+|+++..+.......
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344555556666778999999999999999998876533
No 86
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=82.45 E-value=1.9 Score=38.24 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=31.8
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.|++.++.||.+... ....|..|||+.+|+|+.+|++++.
T Consensus 4 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 43 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIR 43 (151)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 478888888875541 3578999999999999999976544
No 87
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=82.38 E-value=1.9 Score=38.16 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=32.1
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.|++.++.||.+-. .....|..|||+.+|+|+.+|++++.
T Consensus 4 ~ld~~~~~iL~~L~---~~~~~s~~ela~~lg~s~~tv~~~l~ 43 (150)
T 2w25_A 4 ALDDIDRILVRELA---ADGRATLSELATRAGLSVSAVQSRVR 43 (150)
T ss_dssp CCCHHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 48888888887654 13579999999999999999976543
No 88
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=82.32 E-value=1.9 Score=38.75 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=32.1
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.|++.++.||.+... ....|..|||+.+|+|+.+|+.++.
T Consensus 7 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 46 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE---NGRLTNVELSERVALSPSPCLRRLK 46 (162)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 488888888876541 3568999999999999999976544
No 89
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=82.20 E-value=2.1 Score=37.70 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=30.1
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
|++.+..||.+.. .....|..|||+.+|+|+.+|+.++.
T Consensus 1 ld~~~~~il~~L~---~~~~~~~~ela~~lg~s~~tv~~~l~ 39 (150)
T 2pn6_A 1 MDEIDLRILKILQ---YNAKYSLDEIAREIRIPKATLSYRIK 39 (150)
T ss_dssp CCHHHHHHHHHHT---TCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5677778877554 23479999999999999999975543
No 90
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=82.07 E-value=3.3 Score=35.58 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=36.5
Q ss_pred HHHHHHHHHhh----CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILES----LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~~----L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+.. |++.|-.||..-+. ..+.|..|||+.+|+++++|..++.+
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHH
Confidence 33455566654 99999999887763 35899999999999999999865544
No 91
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=81.89 E-value=2 Score=38.08 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=32.2
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.++.||.+.. .....|..|||+.+|+|+.+|+.++.+
T Consensus 5 ~ld~~d~~il~~L~---~~~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 5 LIDNLDRGILEALM---GNARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHH---HCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 47888888887554 135789999999999999999865443
No 92
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.64 E-value=2.6 Score=35.01 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHHhhC-CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 465 VFRILESL-DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 465 L~~~L~~L-~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+..++..| ++....||.... ..+.|..|||+.+|+|+.+|+.++.
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~----~~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG----RADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HSCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33444444 456666766543 3579999999999999999976544
No 93
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=81.63 E-value=1.7 Score=37.78 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=30.0
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
|++.++.||.... .....|..|||+.+|+|+.+|++.+.
T Consensus 2 ld~~~~~il~~L~---~~~~~~~~ela~~lg~s~~tv~~~l~ 40 (141)
T 1i1g_A 2 IDERDKIILEILE---KDARTPFTEIAKKLGISETAVRKRVK 40 (141)
T ss_dssp CCSHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 6777888877543 13568999999999999999975443
No 94
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=81.59 E-value=19 Score=29.20 Aligned_cols=37 Identities=8% Similarity=-0.135 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHcCCCHHHHHHHHHHh
Q 009449 386 KARKALTNSHGK-YPEDIEIAKYTGLSLAEIRSASECL 422 (534)
Q Consensus 386 ka~~~L~~elGr-~Pt~eEIA~~lgis~~kv~~~l~~~ 422 (534)
++..-+...... .++.++||+.+|+++..+.......
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444455555 7899999999999999998876533
No 95
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=81.58 E-value=2.2 Score=34.48 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=21.5
Q ss_pred CCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 486 LNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 486 L~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
|..++..|..+||+.||+++..|.+.+.
T Consensus 24 L~~~~~~Ta~~IAkkLg~sK~~vNr~LY 51 (75)
T 1sfu_A 24 LNTNDYTTAISLSNRLKINKKKINQQLY 51 (75)
T ss_dssp SCTTCEECHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHCCCHHHHHHHHH
Confidence 3334558999999999999988865443
No 96
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=81.48 E-value=2 Score=37.08 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=32.6
Q ss_pred hhCCHHHHHHHhhHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL-~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..|++.+..+|...+-+ ....+.|..|||+.+|+++.+|+.++.+
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 46888888777665533 2246789999999999999999755443
No 97
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=81.47 E-value=4 Score=34.58 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=37.3
Q ss_pred HHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 463 KDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 463 e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..+...+. .|++.+-.||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 16 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 16 VFIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444443 589999998887762 36899999999999999999765443
No 98
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=81.42 E-value=2 Score=36.99 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=28.5
Q ss_pred CCHHHHHHHhhHhcCCC--CCCCCHHHHHHHhCCCHHHHHH
Q 009449 472 LDSRERQVLVLRYGLND--HRPKSLEEIGKLFHVSKEWIRK 510 (534)
Q Consensus 472 L~~rEReVL~LryGL~d--~e~~Sl~EIA~~LgISrerVRq 510 (534)
++|.|+.-|-.|+-+-. .+|+|+.||++.+|+|..||..
T Consensus 37 ~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 67777665554443220 2689999999999999999965
No 99
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=81.38 E-value=3.6 Score=37.70 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+..|++.|-.||...+-.. ..+.|..+||+.+|+++++|..++.+
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344555666779999999998776221 24799999999999999999765443
No 100
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=81.33 E-value=2.2 Score=36.08 Aligned_cols=39 Identities=5% Similarity=0.097 Sum_probs=31.4
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++.+..||.+.. ..+.|..|||+.+|+|+.+|++++.+
T Consensus 30 ~~~~~~~il~~L~----~~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 30 ATPSRLMILTQLR----NGPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp CCHHHHHHHHHHH----HCCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4677888887766 24799999999999999999865543
No 101
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=81.16 E-value=2.4 Score=38.28 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=31.0
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
|++.++.||.+.- .....|..|||+.+|+|+.+|+..+.+
T Consensus 1 lD~~d~~il~~L~---~~~~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 1 MDRLDRKILRILQ---EDSTLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp CCHHHHHHHHHHT---TCSCSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5677788877654 135789999999999999999865543
No 102
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=81.06 E-value=1.9 Score=35.66 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=29.2
Q ss_pred CCHHHHHHH-hhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 472 LDSRERQVL-VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 472 L~~rEReVL-~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
-+|....|| .+.- ..+.|..|||+.+|+|+++|++++.
T Consensus 25 ~~~~Rl~IL~~l~~----~~~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 25 AHPMRLKIVNELYK----HKALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp CSHHHHHHHHHHHH----HSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 356667777 3332 3579999999999999999987655
No 103
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=81.05 E-value=4.1 Score=35.13 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=31.1
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..+++.+-.-++... ++|++|+|+.+|||+.+|++++.-
T Consensus 69 ~~~~~~~l~~~R~~~------glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 346776655555554 789999999999999999999874
No 104
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=80.82 E-value=4.2 Score=34.51 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..||...+. ..+.|..|||+.+|+|+.+|..++.+
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~ 68 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKL 68 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 699999999887762 35799999999999999999765443
No 105
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=80.73 E-value=6.8 Score=31.81 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=27.7
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
++....||.+. + .+.|..|||+.+|+|+.+|++++.
T Consensus 30 ~~~r~~Il~~L---~--~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 30 NPVRRKILRML---D--KGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp CHHHHHHHHHH---H--TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHH---c--CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56666676654 2 469999999999999999976543
No 106
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=80.50 E-value=2.6 Score=39.56 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+++.+..||.+.. ..+.|..|||+.+|+|+.+|++++.+
T Consensus 18 ~d~~~~~IL~~L~----~~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR----NKEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT----TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6788888988775 25799999999999999999866543
No 107
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=80.38 E-value=1.3 Score=37.08 Aligned_cols=37 Identities=24% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+|...|+.+.. ..+.|..+||+.+|||..||+..+..
T Consensus 7 ~R~~~I~~~l~----~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 7 ERTIKIGKYIV----ETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHH----HHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 35555665554 34589999999999999999988765
No 108
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=80.26 E-value=4.1 Score=35.10 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=29.3
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
++....||.+.. ..+.+..|||+.+|+|+.+|++++.
T Consensus 45 ~~~rl~IL~~L~----~~~~s~~ela~~lgis~stvs~~L~ 81 (122)
T 1r1t_A 45 DPNRLRLLSLLA----RSELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp CHHHHHHHHHHT----TCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 566667777655 3578999999999999999986543
No 109
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=80.19 E-value=3.1 Score=35.26 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=36.3
Q ss_pred HHHHHHh-hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 464 DVFRILE-SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 464 ~L~~~L~-~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+...+. .|++.+-.||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 27 ~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 27 LFANGIGNGLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp HHHHHCSSCCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444333 799999998877652 34899999999999999999765443
No 110
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=79.97 E-value=0.93 Score=42.25 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=31.6
Q ss_pred hCCHHHHHHHhhHhcCCCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPK--SLEEIGKLFHVS-KEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~--Sl~EIA~~LgIS-rerVRqi~~R 514 (534)
.|+++|++++...--+-...++ |.+|+|+.+|++ +.+|++++.+
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 5788887776443211112356 999999999999 9999988763
No 111
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=79.94 E-value=5.4 Score=33.88 Aligned_cols=51 Identities=6% Similarity=0.014 Sum_probs=37.4
Q ss_pred HHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 462 KKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 462 ~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
...+...+. .|++.|..||...+.-+ +.+.|..|||+.+|+++.+|..++.
T Consensus 20 ~~~~~~~~~~~~lt~~~~~iL~~l~~~~-~~~~~~~ela~~l~~~~~tvs~~l~ 72 (141)
T 3bro_A 20 STRFDIFAKKYDLTGTQMTIIDYLSRNK-NKEVLQRDLESEFSIKSSTATVLLQ 72 (141)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTT-TSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCcchHHHHHH
Confidence 334444453 58999999988776321 2379999999999999999976543
No 112
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=79.79 E-value=4.4 Score=34.50 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=39.3
Q ss_pred HHHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+. .|++.|-.||..-+.-. .++.|..|||+.+|+++++|..++.+
T Consensus 16 ~~~~~~~~~~~~~lt~~~~~vL~~l~~~~-~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 16 MKQKADQKLEQFDITNEQGHTLGYLYAHQ-QDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHHST-TTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 3444555554 59999999998776321 24899999999999999999765544
No 113
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=79.78 E-value=4.1 Score=34.81 Aligned_cols=41 Identities=24% Similarity=0.373 Sum_probs=32.9
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.|++.+..|+.+.+ +.+ .+.|..|||+.+|+++++|..++.
T Consensus 23 gl~~~~~~il~~L~-~~~-~~~t~~ela~~l~~~~stvs~~l~ 63 (152)
T 1ku9_A 23 GLNKSVGAVYAILY-LSD-KPLTISDIMEELKISKGNVSMSLK 63 (152)
T ss_dssp TCCHHHHHHHHHHH-HCS-SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCChhHHHHHHHHH-HcC-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 58999999887764 222 579999999999999999975543
No 114
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=79.51 E-value=6.5 Score=34.33 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=37.9
Q ss_pred HHHHHHH---hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 463 KDVFRIL---ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 463 e~L~~~L---~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..+...+ ..|++.|..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 35 ~~~~~~l~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 86 (162)
T 2fa5_A 35 GNIAKVYGDRYGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVAR 86 (162)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444 3699999999887763 35899999999999999999765544
No 115
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=79.42 E-value=4.3 Score=34.55 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCCHHHHHHHhhHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 462 KKDVFRILESLDSRERQVLVLRYGL-NDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 462 ~e~L~~~L~~L~~rEReVL~LryGL-~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
...|......|++.|+.|.....-= .....+|..|+|+..|+|..+|-..-+
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~k 57 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSK 57 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Confidence 3467778899999999998765410 122579999999999999999976544
No 116
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=78.87 E-value=1.6 Score=33.92 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 009449 492 KSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 492 ~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++|||+.+|||+.||+.+++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999998874
No 117
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=78.77 E-value=2.9 Score=38.35 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=32.3
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.|++.++.||.+... ....|..|||+.+|+|+.+|++.+.
T Consensus 24 ~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~rl~ 63 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIR 63 (171)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 588999888876541 3579999999999999999976543
No 118
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=78.72 E-value=2.2 Score=33.84 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|+.|+|+.+|||+.+|+++++.
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46899999999999999999999863
No 119
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=78.68 E-value=2.2 Score=35.81 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=29.5
Q ss_pred HHHhhCC-HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 467 RILESLD-SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 467 ~~L~~L~-~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.++..|. +....||.+.. ..+.|..|||+.+|+|+.+|++.+.
T Consensus 17 ~~~~al~~~~r~~IL~~L~----~~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 17 RVGKALANGRRLQILDLLA----QGERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp HHHHHHTTSTTHHHHHHHT----TCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH----cCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3333333 33455666554 3578999999999999999975543
No 120
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=78.64 E-value=6.2 Score=34.23 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=34.6
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..|++.|-.||...+. ..+.|..|||+.+|+++++|..++.+
T Consensus 37 ~~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~ 78 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKR 78 (149)
T ss_dssp TTCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3599999999887763 46889999999999999999865544
No 121
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=78.52 E-value=3.9 Score=43.75 Aligned_cols=118 Identities=16% Similarity=0.045 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhhhhhhccCCCCCCChHHHHHHHHHHHH
Q 009449 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKD 464 (534)
Q Consensus 385 ~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~~l~e~i~d~~~~spee~v~~~el~e~ 464 (534)
.+.-..|.+ +..-|..+||+.+|+|..+++...........-...+...+.+-.... ++. ....+
T Consensus 21 ~~IL~~L~~--~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~L~~--~~~-~~~~~---------- 85 (485)
T 3sqn_A 21 IRLLEQLLN--VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIRLRN--QGN-AQTNE---------- 85 (485)
T ss_dssp HHHHHHHHH--CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEEEEE--C----CTHH----------
T ss_pred HHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEEEec--CcH-HHHHH----------
Confidence 333444443 344789999999999999999887766544311111111111111110 010 01110
Q ss_pred HHHHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 465 VFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 465 L~~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+. ..+++.+|....+.+=|. .+..|+.++|+.+.||++||.+-+.+....|..
T Consensus 86 ~~---~~~~~~eR~~~Il~~LL~-~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 86 LW---SLFLPQSISIQLLKELLF-TKELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp HH---HHHGGGSHHHHHHHHHHH-CSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred HH---HhcCHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 11 122333343333333222 358999999999999999998877777666654
No 122
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=78.26 E-value=7.4 Score=33.79 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 462 KKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 462 ~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
...+...+. .|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 29 ~~~~~~~l~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 29 SAQFHDHIRAQGLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 334444443 599999999887662 35799999999999999999765543
No 123
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=78.07 E-value=3.8 Score=32.34 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=34.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.++++...|+.+...-+ +.+.|..||++.+ +||..||+ |.++.|.+
T Consensus 14 ~~t~~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is~~TVy----R~L~~L~~ 64 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIGLATVY----RVLNQFDD 64 (83)
T ss_dssp CCCHHHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCCHHHHH----HHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCCHhhHH----HHHHHHHH
Confidence 48888888888765211 1479999999999 99999997 45555554
No 124
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=78.05 E-value=4.5 Score=34.73 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+. .|++.|-.||..-+ ...+.|..|||+.+|+++++|..++.+
T Consensus 21 ~~~~~~~~~~~~glt~~q~~vL~~l~---~~~~~t~~eLa~~l~~~~~tvs~~l~~ 73 (140)
T 3hsr_A 21 IIKKYTNYLKEYDLTYTGYIVLMAIE---NDEKLNIKKLGERVFLDSGTLTPLLKK 73 (140)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHSC---TTCEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH---HcCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3344555553 59999988887665 246899999999999999999865544
No 125
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=77.82 E-value=3.2 Score=37.99 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.6
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..|++.++.||.+... ....|..|||+.+|+|+.+|+.++.
T Consensus 13 ~~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~~l~ 53 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK---DARLTISELSEQLKKPESTIHFRIK 53 (171)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4478888888876541 3478999999999999999976543
No 126
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=77.73 E-value=2.6 Score=36.20 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=32.1
Q ss_pred hCCHHHH-HHHhhHhcCCCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009449 471 SLDSRER-QVLVLRYGLNDHRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKL 519 (534)
Q Consensus 471 ~L~~rER-eVL~LryGL~d~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KL 519 (534)
.+++.++ +|+.+.+ ..+. +..+||+.|||++.+|+.++...-..+
T Consensus 7 ~~t~e~K~~iv~~~~----~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVE----ENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHH----HCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHH----HCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4667766 5666654 2344 455999999999999999987655444
No 127
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=77.70 E-value=7.1 Score=33.01 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=38.9
Q ss_pred HHHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+. .|++.|..||...+. ..+.|..+||+.+|+++.+|..++.+
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 19 KDRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHH
Confidence 3445555553 599999998887762 35789999999999999999865544
No 128
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=77.48 E-value=2.2 Score=31.87 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|..++|+.+|||+.+|++++..
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999998753
No 129
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=77.45 E-value=1.9 Score=31.79 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|.+++|+.+|||+.+|++++.
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3578999999999999999999986
No 130
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=77.41 E-value=2.1 Score=33.65 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|++|+|+.+|||+.+|++++.-
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46899999999999999999999865
No 131
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=77.39 E-value=2.2 Score=32.07 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|..++|+.+|||+.+|++++.-
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 35789999999999999999998863
No 132
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=77.16 E-value=3.9 Score=35.46 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHH--hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 464 DVFRIL--ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 464 ~L~~~L--~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+...+ ..|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 25 EMLESMEKQGVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 4799999999877762 35789999999999999999765443
No 133
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=77.11 E-value=6.3 Score=34.13 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.|..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 38 ~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 78 (154)
T 2qww_A 38 GLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDG 78 (154)
T ss_dssp TCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 599999999877762 35799999999999999999765544
No 134
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=77.01 E-value=6.5 Score=33.80 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=37.0
Q ss_pred HHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 464 DVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 464 ~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+...+. .|++.|..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 30 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 30 RGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 4444553 589999998877662 35799999999999999999865544
No 135
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=76.75 E-value=3.9 Score=32.96 Aligned_cols=30 Identities=33% Similarity=0.335 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHhhhh
Q 009449 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (534)
Q Consensus 396 Gr~Pt~eEIA~~lgis~~kv~~~l~~~~~~ 425 (534)
|..||..|||+.+|++...|+..+......
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 889999999999999999999888776543
No 136
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=76.67 E-value=5 Score=35.23 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=39.2
Q ss_pred HHHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+. .|+..|-.||.+.+.- ...+.|..|||+.+++++.+|..++.+
T Consensus 20 l~~~~~~~l~~~gLt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 20 LLGEVDAVVKPYGLTFARYEALVLLTFS-KSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHTS-GGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445666664 5999999998876622 224689999999999999999765543
No 137
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=76.61 E-value=4.8 Score=35.85 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=33.9
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+-.||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 42 ~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~ 82 (168)
T 2nyx_A 42 NITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDR 82 (168)
T ss_dssp SCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 699999999877762 25799999999999999999765543
No 138
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=76.55 E-value=17 Score=30.85 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=48.3
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHHHH-
Q 009449 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRER- 477 (534)
Q Consensus 399 Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~~l~e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~rER- 477 (534)
-+..+||+.+|++...|..+.......... .. -.-+. .|++.+.
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~-~~------------~gr~~----------------------~l~~~~~~ 67 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGTS-KR------------APRRK----------------------ALSVRDER 67 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTCC-CC------------CCCCC----------------------SSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCCc-CC------------CCCCC----------------------cCCHHHHH
Confidence 478899999999999999887654321100 00 00011 1222211
Q ss_pred HHHhhHhcCCCCCCCCHHHHHHHhC--CCHHHHHHHHHHH
Q 009449 478 QVLVLRYGLNDHRPKSLEEIGKLFH--VSKEWIRKLEKKA 515 (534)
Q Consensus 478 eVL~LryGL~d~e~~Sl~EIA~~Lg--ISrerVRqi~~RA 515 (534)
.|+.+.- ....|..+|+..|| +|.++|+.++.+.
T Consensus 68 ~i~~~~~----~~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 68 NVIRAAS----NSCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp HHHHHHH----HCCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred HHHHHHh----CCCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 2222211 24579999999999 8999999988763
No 139
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.50 E-value=5.6 Score=33.92 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=36.9
Q ss_pred HHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 463 KDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 463 e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..+...+. .|++.+..||...+. ...+.|..|||+.+|+++.+|..++.+
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 24 AELDRRLSHLGLSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHTGGGCCTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 34444443 589999888877622 246899999999999999999765443
No 140
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=76.39 E-value=5.6 Score=40.12 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=41.6
Q ss_pred HHHHHH--HhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 463 KDVFRI--LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 463 e~L~~~--L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
+.+.+. ++.||+.-+++-.+|. ..++.|++|+|+.++||++.|..++.|-.
T Consensus 233 ~~i~e~~Gl~~Lp~~L~e~a~lRl---~~pdaSL~ELge~l~isKSgVnhRlrKL~ 285 (295)
T 3hyi_A 233 ELIKENMGLENLPEDLRRVALVRL---RNKELSLRELGKKLNLTKSQIYSKLKRII 285 (295)
T ss_dssp HHHHHHTCGGGSCHHHHHHHHHHH---HCTTSCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCcccCCHHHHHHHHHHH---HCccccHHHHHHHhCcCHHHHHHHHHHHH
Confidence 344443 3789999999999998 35889999999999999999988776543
No 141
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=76.19 E-value=20 Score=30.18 Aligned_cols=36 Identities=11% Similarity=-0.015 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHH
Q 009449 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (534)
Q Consensus 385 ~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~ 420 (534)
.++..-+...+...++.++||+.+|++...+.....
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 10 TRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp HHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444555566788999999999999998887654
No 142
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=76.07 E-value=2.5 Score=31.99 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|..++|+.+|||+.+|++++.-
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 35789999999999999999998863
No 143
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=75.89 E-value=2.6 Score=32.73 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=28.2
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+++..-.-++.. .++|.+|+|+.+|||+.+|++++.-
T Consensus 11 ~~g~~lr~~R~~------~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 11 VAPEFIVKVRKK------LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHHHHH------TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHHHHH------cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 445444444444 4789999999999999999999863
No 144
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=75.83 E-value=22 Score=30.33 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 009449 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (534)
Q Consensus 384 i~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~ 421 (534)
+.++..-+.+.....++.++||+.+|++...+..+...
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45555556666677899999999999999999877653
No 145
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=75.79 E-value=2.5 Score=32.30 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|..++|+.+|||+.+|++++.
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 3578999999999999999999986
No 146
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=75.76 E-value=2.9 Score=32.04 Aligned_cols=26 Identities=4% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|..++|+.+|||+++|++++..
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46899999999999999999998864
No 147
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=75.70 E-value=4.9 Score=34.88 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=33.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.|..||.... ..+.|..|||+.+|+++++|..++.+
T Consensus 35 ~lt~~q~~iL~~l~----~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (151)
T 3kp7_A 35 GISAEQSHVLNMLS----IEALTVGQITEKQGVNKAAVSRRVKK 74 (151)
T ss_dssp TCCHHHHHHHHHHH----HSCBCHHHHHHHHCSCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----cCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 59999998887662 57899999999999999999865544
No 148
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=75.67 E-value=4.6 Score=31.90 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.+.|..|||+.+|+|+.+|+..+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 468999999999999999975443
No 149
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=75.49 E-value=1.9 Score=33.77 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|++|+|+.+|||+.+|++++.
T Consensus 25 ~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3578999999999999999999986
No 150
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=75.41 E-value=6.3 Score=33.77 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=32.8
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+-.||..-+. ..+ |..|||+.+|+++++|..++.+
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~ 73 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDK 73 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHH
Confidence 799999999887762 234 9999999999999999765544
No 151
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=75.37 E-value=7.5 Score=33.46 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=33.6
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 37 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp TCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 599999999887762 35799999999999999999765443
No 152
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=75.31 E-value=5 Score=34.39 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=37.7
Q ss_pred HHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 462 KKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 462 ~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
...+...+. .|++.|..||...+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 23 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 23 HLFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 334444453 489999999887662 36899999999999999999765544
No 153
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=75.29 E-value=7.7 Score=33.51 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=38.0
Q ss_pred HHHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+. .|++.|-.||...+- ...+.|..|||+.+++++.+|..++.+
T Consensus 24 ~~~~~~~~l~~~glt~~q~~vL~~l~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 24 VLGAVNKALVPTGLRVRSYSVLVLACE--QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHH--STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 3444555553 599999999886541 134689999999999999999865443
No 154
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=75.25 E-value=2.4 Score=33.87 Aligned_cols=26 Identities=8% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|.+|+|+.+|||+.+|+++++-
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 46899999999999999999999863
No 155
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=75.13 E-value=3.2 Score=32.69 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|.+++|+.+|||+.+|++++.-
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 35789999999999999999999873
No 156
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=75.10 E-value=2.6 Score=34.60 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|+.|+|+.+|||+.+|++++.-
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46899999999999999999999874
No 157
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=75.07 E-value=1.9 Score=33.81 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.++|+.|+|+.+|||+.+|+++++
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 478999999999999999999886
No 158
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=75.05 E-value=5.2 Score=35.05 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=33.8
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 599999999887762 35789999999999999999765543
No 159
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=74.96 E-value=4.3 Score=34.99 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=33.4
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..||...+. ..+.|..|||+.+|+++++|..++.+
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 77 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 588888888877652 35899999999999999999865554
No 160
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=74.91 E-value=2.1 Score=31.75 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++|..++|+.+|||+.+|++++..
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4789999999999999999998863
No 161
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=74.86 E-value=2.5 Score=35.68 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|++|+|+.+|||+.+|+++++
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 5689999999999999999999985
No 162
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=74.72 E-value=2.4 Score=33.66 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|+.++|+.+|||+++|++++.+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46899999999999999999988765
No 163
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=74.61 E-value=2.1 Score=33.21 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.++|.+++|+.+|||+.+|++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 478999999999999999999986
No 164
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.54 E-value=8.2 Score=33.07 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=36.5
Q ss_pred HHHHHH--hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 464 DVFRIL--ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 464 ~L~~~L--~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+...+ ..|++.|-.||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 19 ~~~~~~~~~~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 19 VFDKWIGQQDLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 3589999999877652 35699999999999999999765443
No 165
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=74.43 E-value=4.1 Score=32.60 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|++|+|+.+|||+.+|.+++.
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999999999987
No 166
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=74.38 E-value=2.6 Score=34.37 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=32.6
Q ss_pred hCCHHHHHHHhhHhcCC-CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLN-DHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~-d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++++-.||...+.-. ++...|..|||+.+|+++++|..++.+
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 53 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKK 53 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 48888888887665321 123389999999999999999766543
No 167
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=74.25 E-value=5 Score=35.19 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=38.7
Q ss_pred HHHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+. .|++.|-.||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 35 ~~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 35 GQIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555554 599999998877653 46799999999999999999765544
No 168
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=74.01 E-value=7.1 Score=33.83 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=37.8
Q ss_pred HHHHHHHH--hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 462 KKDVFRIL--ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 462 ~e~L~~~L--~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
...+...+ ..|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 33 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~ 84 (153)
T 2pex_A 33 HKLYRGLLKALDLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKR 84 (153)
T ss_dssp HHHHHHHTTTTTCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 33444444 3589999998877663 35799999999999999999865544
No 169
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=73.92 E-value=2.9 Score=32.61 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|++++|+.+|||+.+|++++.-
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 35899999999999999999999863
No 170
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=73.90 E-value=2.2 Score=32.66 Aligned_cols=25 Identities=12% Similarity=0.027 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++|.+|+|+.+|||+.+|++++.-
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999864
No 171
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=73.73 E-value=4 Score=30.41 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLF-----HVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~L-----gISrerVRqi~~ 513 (534)
....|.+||++.| +||..||+..+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4689999999999 999999997776
No 172
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=73.56 E-value=1.9 Score=36.10 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.3
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+.+....|+...+ ..++..|..|||+.+|+|+.+|+ +++++|..
T Consensus 16 ~~~~~l~Il~~l~--~~g~~~s~~eLa~~lgvs~~tV~----~~L~~L~~ 59 (110)
T 1q1h_A 16 LGDDVIDVLRILL--DKGTEMTDEEIANQLNIKVNDVR----KKLNLLEE 59 (110)
T ss_dssp SCSTTHHHHHHHH--HHCSCBCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred cChHHHHHHHHHH--HcCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4556666776543 12456899999999999999997 56666664
No 173
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=73.49 E-value=3.7 Score=30.87 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhC--CCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFH--VSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~Lg--ISrerVRqi~~R 514 (534)
..++|++|+|+.+| +|+.+|++++.-
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 35889999999999 999999999864
No 174
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=73.46 E-value=3.5 Score=33.31 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|.+|+|+.+|||+.+|++++.-
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 46899999999999999999999863
No 175
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=73.42 E-value=1.8 Score=36.14 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=22.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 492 KSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 492 ~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
.|..+||..+||++.+|+++..+..
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7999999999999999999987753
No 176
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=72.90 E-value=3.2 Score=32.26 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.++|..|+|+.+|||+.+|.+++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 578999999999999999999986
No 177
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=72.79 E-value=4 Score=32.18 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=33.7
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH----VSKEWIRKLEKK 514 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg----ISrerVRqi~~R 514 (534)
..|++.|..||...+- ..+.|..||++.++ +++.+|..++.+
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~r 50 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLR 50 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4689999999987773 35799999999997 799999765543
No 178
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=72.77 E-value=14 Score=33.85 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=35.5
Q ss_pred HhhCCHHHHHHHhh-----HhcC-----CCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 469 LESLDSRERQVLVL-----RYGL-----NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 469 L~~L~~rEReVL~L-----ryGL-----~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+...++.+|-.-.| ++|- .-....|.++||..+|+|+++|. |++++|++.
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 207 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVSE 207 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 45578887765444 4543 11247899999999999999995 666777653
No 179
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=72.58 E-value=8.4 Score=33.89 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=38.5
Q ss_pred HHHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+. .|++.|-.||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 31 ~~~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 31 ISKYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444443 699999999887662 35899999999999999999765544
No 180
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=72.39 E-value=2.6 Score=32.08 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.++|.+++|+.+|||+.+|++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 478999999999999999999886
No 181
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=71.89 E-value=5 Score=34.23 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.4
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 589999888877762 35799999999999999999765443
No 182
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=71.62 E-value=3.2 Score=31.59 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|.+++|+.+|||+.+|++++.
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3578999999999999999999886
No 183
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=71.44 E-value=2.7 Score=33.93 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.+.|..|||+.||||..+|+..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 467999999999999999986553
No 184
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=71.25 E-value=3.9 Score=34.86 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=28.3
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+|....||.+.. ..+.+..|||+.+|+|+.+|++++.
T Consensus 20 ~~~r~~IL~~L~----~~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 20 DPTRCRILVALL----DGVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp SHHHHHHHHHHH----TTCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455667777654 3468999999999999999976543
No 185
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=71.22 E-value=6.6 Score=33.51 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=37.0
Q ss_pred HHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 462 KKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 462 ~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
...+...+. .|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 15 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 15 DSISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp HHHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 334444443 589999888876652 35789999999999999999765444
No 186
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=71.18 E-value=3.3 Score=33.94 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|.+|+|+.+|||+.+|++++.
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3588999999999999999999986
No 187
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=70.76 E-value=2.7 Score=34.93 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=33.5
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..|++.|..|+...+-.+ .++.+.+|||+.+|++..+|..++.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g-~~gi~qkeLa~~~~l~~~tvt~iLk 58 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAG-NKGIWSRDVRYKSNLPLTEINKILK 58 (91)
T ss_dssp CCSCSSHHHHHHHHHHHC-TTCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcC-CCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 468888888888777222 3589999999999999999864443
No 188
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=70.26 E-value=5.5 Score=34.75 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=34.2
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.|-.||...+.- ..+.|..|||+.+|+++.+|..++.+
T Consensus 44 ~l~~~~~~iL~~L~~~--~~~~~~~ela~~l~i~~~tvs~~l~~ 85 (160)
T 3boq_A 44 GLSLAKFDAMAQLARN--PDGLSMGKLSGALKVTNGNVSGLVNR 85 (160)
T ss_dssp SCCHHHHHHHHHHHHC--TTCEEHHHHHHHCSSCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCChhhHHHHHHH
Confidence 6999999998877421 35899999999999999999765544
No 189
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.24 E-value=5 Score=33.88 Aligned_cols=49 Identities=8% Similarity=0.075 Sum_probs=37.1
Q ss_pred HHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 463 KDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 463 e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..+...+. .|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 20 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 20 KNLDKAIEQYDISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp HHHHHHTGGGTCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred HHHHhhhhhcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 34444443 589999999887762 35789999999999999999765544
No 190
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=70.21 E-value=5 Score=34.31 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=26.4
Q ss_pred hhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 481 VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 481 ~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+|- ..++|++|+|+.+|||+.+|+.++.-
T Consensus 14 ~~R~----~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 14 KKRE----ERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HHHH----TTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHHH----HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4555 67999999999999999999999974
No 191
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.08 E-value=4.5 Score=34.35 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=33.4
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~ 73 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLAR 73 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHH
Confidence 589999988877662 35789999999999999999765443
No 192
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=69.87 E-value=14 Score=32.53 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=37.1
Q ss_pred HHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 462 KKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 462 ~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+..+...|. .|++.|-.||...+.. +.+.+..|||+.+|+++++|..++.+
T Consensus 17 ~~~~~~~l~~~gLt~~q~~vL~~L~~~--~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 17 RALIDHRLKPLELTQTHWVTLYNINRL--PPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp HHHHHHHTGGGCCCHHHHHHHHHHHHS--CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHc--CCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 344555553 5899998888665422 35788999999999999999765543
No 193
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=69.76 E-value=3.9 Score=33.86 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|++|+|+.+|||+.+|++++.-
T Consensus 39 ~~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 39 EKGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 35889999999999999999999863
No 194
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=69.43 E-value=3.6 Score=32.08 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+ |..++|+.+|||+.+|++++..
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 46 9999999999999999999875
No 195
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=69.41 E-value=15 Score=32.19 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=35.5
Q ss_pred HHHHHHHh--hCCHHHHHHHhhHhcCCC--CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 463 KDVFRILE--SLDSRERQVLVLRYGLND--HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 463 e~L~~~L~--~L~~rEReVL~LryGL~d--~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..+...+. .|++.|-.||...+-..+ +.+.|..|||+.+++++.+|..++.+
T Consensus 20 ~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 20 QAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 34455553 599999988877663221 24589999999999999999876655
No 196
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=69.26 E-value=3.9 Score=35.35 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|++|+|+.+|||+.+|+++++
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999999999986
No 197
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=69.25 E-value=3.6 Score=34.95 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=29.0
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+|.-..||.+.. ..+.|..|||+.+|+|+.+|++++
T Consensus 17 ~~~R~~Il~~L~----~~~~~~~eLa~~l~is~~tvs~hL 52 (118)
T 3f6o_A 17 DPTRRAVLGRLS----RGPATVSELAKPFDMALPSFMKHI 52 (118)
T ss_dssp SHHHHHHHHHHH----TCCEEHHHHHTTCCSCHHHHHHHH
T ss_pred CHHHHHHHHHHH----hCCCCHHHHHHHhCcCHHHHHHHH
Confidence 566667777666 467899999999999999998654
No 198
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=69.16 E-value=10 Score=33.77 Aligned_cols=52 Identities=12% Similarity=0.002 Sum_probs=38.2
Q ss_pred HHHHHHHHH--hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRIL--ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L--~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+ ..|++.|-.||...+.. ..+.|..|||+.+|+++.+|..++.+
T Consensus 38 ~~~~~~~~l~~~glt~~q~~vL~~L~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 38 WRALIDHRLKPLELTQTHWVTLHNIHQL--PPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHS--CSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 334444444 35899999988877622 24699999999999999999865443
No 199
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=68.76 E-value=3.9 Score=35.38 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=27.5
Q ss_pred CCHHHHHHHhhHhcCC-CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLN-DHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 472 L~~rEReVL~LryGL~-d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
|++.+..+|...+-+. ...+.|..|||+.+|+|+.+|+.++.
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~ 44 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQ 44 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3444444444333221 13579999999999999999976544
No 200
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=68.62 E-value=4.8 Score=33.87 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|..|+|+.+|||+.+|+++++
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5689999999999999999999986
No 201
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=68.45 E-value=3.4 Score=33.59 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHhCCCHH-HHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKE-WIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISre-rVRqi~~R 514 (534)
..+.|..+||+.||||.. .|++++.+
T Consensus 23 ~g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 23 VSDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp TCCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cCCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 357899999999999999 99876543
No 202
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=68.12 E-value=4.1 Score=32.33 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=20.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 009449 493 SLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 493 Sl~EIA~~LgISrerVRqi~~R 514 (534)
+..++|+.+|||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5999999999999999999763
No 203
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.00 E-value=5.6 Score=34.66 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=32.8
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.|..||...+- ..+.|..|||+.+|+++.+|.+++.+
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 488888888877652 24799999999999999999765543
No 204
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=67.98 E-value=11 Score=32.29 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=28.8
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
++....||.+... ..+.|..|||+.+|+|+++|++++.
T Consensus 41 ~~~rl~IL~~L~~---~~~~s~~eLa~~l~is~stvs~~L~ 78 (122)
T 1u2w_A 41 DENRAKITYALCQ---DEELCVCDIANILGVTIANASHHLR 78 (122)
T ss_dssp SHHHHHHHHHHHH---SSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 5566667765441 2578999999999999999987654
No 205
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=67.92 E-value=4.6 Score=36.94 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|..+||+.||+|+.||++++.
T Consensus 156 ~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 156 QQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3689999999999999999988764
No 206
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=67.15 E-value=4.5 Score=32.85 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=31.9
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHH----HHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEI----GKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EI----A~~LgISrerVRqi~~R 514 (534)
.|++.|-.||...+. ..+.|..|| |+.+|+++.+|..++.+
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~ 49 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKF 49 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 477788888776652 357999999 99999999999765543
No 207
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=66.79 E-value=4 Score=34.37 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+..+ |..|||+.||||+.+|+ +|+++|...
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr----~al~~L~~~ 70 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIV----NALRKLESA 70 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred CCcCCCHHHHHHHHCcCHHHHH----HHHHHHHHC
Confidence 3445 99999999999999997 577777753
No 208
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=66.77 E-value=4.4 Score=37.99 Aligned_cols=32 Identities=9% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 477 ReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+.|+.++- .|+|..+||+.||+|+.||..++.
T Consensus 166 ~~i~~~~~-----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE-----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34555543 689999999999999999987654
No 209
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=66.55 E-value=3.9 Score=32.60 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++|.+++|+.+|||+.+|++++.-
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999863
No 210
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=66.35 E-value=2.4 Score=32.08 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 009449 492 KSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 492 ~Sl~EIA~~LgISrerVRqi~ 512 (534)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999986
No 211
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=66.10 E-value=4.2 Score=34.23 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|++|+|+.+|||+.+|++++.
T Consensus 32 ~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 32 NKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3578999999999999999999875
No 212
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=66.09 E-value=10 Score=33.30 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=37.6
Q ss_pred HHHHHHHH--hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 462 KKDVFRIL--ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 462 ~e~L~~~L--~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
...+...+ ..|++.|-.||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 39 ~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 39 SSELNQALASEKLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444 3699999999887762 25899999999999999999765544
No 213
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=66.08 E-value=5.9 Score=34.21 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=31.1
Q ss_pred HHHHHH--hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 464 DVFRIL--ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 464 ~L~~~L--~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+...+ ..|++.|-.||...+.- +..+.|..|||+.+|+++.+|..++.+
T Consensus 29 ~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 29 SADARLAELGLNSQQGRMIGYIYEN-QESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH-TTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHhC-CCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 344444 35999999998877631 126899999999999999999765443
No 214
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=66.08 E-value=3.2 Score=40.72 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.++...
T Consensus 138 ~~~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 138 YHNVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CccCCHHHHHHHhCCCchhHHHh
Confidence 56799999999999999999764
No 215
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=66.01 E-value=7.5 Score=33.83 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=35.3
Q ss_pred HhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 009449 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH----VSKEWIRKLEKK 514 (534)
Q Consensus 469 L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg----ISrerVRqi~~R 514 (534)
+..|++.|..||...+.. ..+.|..||++.++ +++.+|..++.+
T Consensus 4 ~~~lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~r 51 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQR 51 (138)
T ss_dssp GGGCCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 357999999999887721 25799999999998 899999766554
No 216
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=65.89 E-value=5.9 Score=29.65 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
.+ |+.++|+.+|||+.+|++++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 46 99999999999999999988
No 217
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=65.73 E-value=4.7 Score=30.96 Aligned_cols=26 Identities=19% Similarity=-0.012 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
.-++.+|+|+.+|||+.||.....+.
T Consensus 9 ~~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp SEECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 34789999999999999999988764
No 218
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.36 E-value=4.9 Score=34.47 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=31.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+-.||...+.- ..+.|..+||+.+|+++.+|..++.+
T Consensus 32 ~l~~~~~~iL~~l~~~--~~~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRL--GGDVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp HHHHHHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc--CCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 3677777777666521 25789999999999999999765543
No 219
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=65.31 E-value=6.7 Score=35.34 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=38.1
Q ss_pred HHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 462 KKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 462 ~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
...+...+. .|++.+-.||...+.-++..+.|..|||+.+|+++.+|..++.+
T Consensus 55 ~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 109 (181)
T 2fbk_A 55 GREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVR 109 (181)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334445553 59999999998877322112489999999999999999765543
No 220
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=65.16 E-value=4.7 Score=32.34 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=28.3
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
++....||..... ..+.|..|||+.+|+|+.+|.+++.
T Consensus 15 ~~~~~~iL~~L~~---~~~~~~~ela~~l~is~~tvs~~l~ 52 (100)
T 1ub9_A 15 NPVRLGIMIFLLP---RRKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp SHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHh---cCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 5666667764431 3578999999999999999976544
No 221
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=65.13 E-value=9.4 Score=37.14 Aligned_cols=47 Identities=15% Similarity=0.369 Sum_probs=36.3
Q ss_pred HHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 468 ~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
.-..|++.+..||..... ..+.|..|||+.+|++++||.+ .+++|.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~---~~~~s~~eLA~~lglsksTv~r----~L~~Le~ 192 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE---TKGTGITELAKMLDKSEKTLIN----KIAELKK 192 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH---HTCBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 345799999999986431 3579999999999999999965 4555554
No 222
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=65.08 E-value=5.6 Score=34.23 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=31.2
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLF--HVSKEWIRKLEKK 514 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~L--gISrerVRqi~~R 514 (534)
+++..+.||.+.- .....|..|||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~---~~g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIH---EEGNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHH---HHSCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH---HcCCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6777777877653 12489999999999 9999999876543
No 223
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=64.70 E-value=5.8 Score=33.47 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|.+|+|+.+|||+.+|++++.-
T Consensus 34 ~~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 35889999999999999999999873
No 224
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=64.64 E-value=7.3 Score=34.51 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=36.1
Q ss_pred HHHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 461 MKKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 461 l~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+...+...+. .|++.|-.||...+.-+ ..+.|..|||+.+|+++.+|..++.+
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~tvs~~l~~ 85 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRSVH-PEGMATLQIADRLISRAPDITRLIDR 85 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TSCEEHHHHHHHC---CTHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3344555553 59999999988776321 25899999999999999999765544
No 225
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=64.63 E-value=5.4 Score=32.03 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++|..++|+.+|||+.+|++++..
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999999874
No 226
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=64.57 E-value=5.4 Score=35.34 Aligned_cols=26 Identities=8% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|+.|+|+.+|||+++|+++++-
T Consensus 79 ~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46889999999999999999999873
No 227
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=64.50 E-value=5.5 Score=34.77 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
++.+ |..++|+.||||+.+|| +|++.|..
T Consensus 35 G~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4455 88999999999999997 67777765
No 228
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=64.45 E-value=5.2 Score=33.37 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|++++|+.+|||+.+|++++.-
T Consensus 20 ~~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 20 EHGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999873
No 229
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=63.95 E-value=3 Score=32.54 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..|+.|||+..|||+.||+.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 46999999999999999998764
No 230
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=63.87 E-value=5.3 Score=37.10 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=28.6
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.++.. +-.+|- ..++|++|+|+.+|||+.+|.+++.
T Consensus 90 ~s~~~--lk~lR~----~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 90 VSHEM--FGDWMH----RNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp CCHHH--HHHHHH----HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCcHH--HHHHHH----HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 55554 444555 4689999999999999999999886
No 231
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=63.78 E-value=5.1 Score=32.31 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|..++|+.+|||+.+|++++.-
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999998863
No 232
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=63.76 E-value=6 Score=32.47 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|..++|+.+|||+.+|++++..
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35889999999999999999999875
No 233
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=63.64 E-value=7.9 Score=35.69 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=28.6
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
++.+.|+.+.. .+..+.|.+|||+.+|||+.||++.+.
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 56666766543 113458999999999999999987665
No 234
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=63.31 E-value=7.7 Score=33.04 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=33.3
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..|+...+. ..+.|..|||+.+|+++.+|...+.+
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp TCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 599999998877662 34689999999999999999765443
No 235
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=63.17 E-value=6.3 Score=32.84 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=30.7
Q ss_pred HHHHhhCCHHHHH-HHhhHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 009449 466 FRILESLDSRERQ-VLVLRYGLNDHRPKSLEEIGKLF-HVSKEWIRKLEK 513 (534)
Q Consensus 466 ~~~L~~L~~rERe-VL~LryGL~d~e~~Sl~EIA~~L-gISrerVRqi~~ 513 (534)
..++..|+.+-+. ||...+ ..+.+..||++.+ |+|+.+|.+.+.
T Consensus 5 ~~~l~~l~~~~~~~IL~~L~----~~~~~~~eLa~~l~~is~~tls~~L~ 50 (107)
T 2hzt_A 5 EATLEVIGGKWKXVILXHLT----HGKKRTSELKRLMPNITQKMLTQQLR 50 (107)
T ss_dssp HHHHHHHCSTTHHHHHHHHT----TCCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHH----hCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 3455666666553 444333 3579999999999 999999976543
No 236
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=62.95 E-value=4.1 Score=34.85 Aligned_cols=48 Identities=21% Similarity=0.114 Sum_probs=36.0
Q ss_pred HHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 465 VFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 465 L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+...+. .|++.|-.||...+. .+..+.|..|||+.+|+++.+|..++.
T Consensus 26 ~~~~~~~~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~ 75 (127)
T 2frh_A 26 KSLIKKEFSISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVK 75 (127)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 344443 599999999887763 112578999999999999999976543
No 237
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=62.71 E-value=14 Score=33.47 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
...|.++||..+|+|+++|. |++++|++.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 56899999999999999995 677777754
No 238
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=62.37 E-value=28 Score=31.09 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+.|.++||..+|+|+++|. |++++|++.
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 194 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLEDQ 194 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 5799999999999999996 677777753
No 239
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=62.36 E-value=15 Score=34.76 Aligned_cols=25 Identities=4% Similarity=0.013 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..++|..++|+.+|||.++|++++.
T Consensus 41 ~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 41 QHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCChHHHHHHHh
Confidence 4689999999999999999999975
No 240
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=62.33 E-value=7.7 Score=32.98 Aligned_cols=26 Identities=15% Similarity=0.485 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|.+++|+.+|||+.+|++++.-
T Consensus 23 ~~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 23 KQGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 46889999999999999999999863
No 241
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.28 E-value=6.3 Score=33.08 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=34.2
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH----VSKEWIRKLEKKA 515 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg----ISrerVRqi~~RA 515 (534)
..|++.|..||...+- ..+.|..|||+.++ +++.+|..++.+-
T Consensus 6 ~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L 52 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRL 52 (123)
T ss_dssp CCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHH
Confidence 4688999888876652 35899999999999 8999997665543
No 242
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=61.23 E-value=94 Score=32.79 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHcC--CCHHHHHH
Q 009449 254 NLERIKTTLEKESGKAASLNCWAQAAG--VSERVLKQ 288 (534)
Q Consensus 254 ~le~~~~~l~~~~g~~ps~~ewa~a~g--~d~~~L~~ 288 (534)
++.+.+..+...+|+.|+..+.|...| ++.+.+..
T Consensus 285 ~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~ 321 (438)
T 1l9z_H 285 KLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEE 321 (438)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHH
Confidence 445556667778899999999999888 88776544
No 243
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=61.07 E-value=7.3 Score=32.40 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|..++|+.+|||+.+|++++..
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 56899999999999999999998863
No 244
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=61.03 E-value=19 Score=32.29 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=33.0
Q ss_pred HhhCCHHHHHHHhhHh-----cC-----CCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 469 LESLDSRERQVLVLRY-----GL-----NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 469 L~~L~~rEReVL~Lry-----GL-----~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+...+..+|-.-.+.. |- .-.-..|.++||..+|+|+++|. |++++|++.
T Consensus 114 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 173 (202)
T 2zcw_A 114 LATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVT----KVIGELARE 173 (202)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 4557777775433322 11 00134899999999999999996 666777653
No 245
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=60.89 E-value=11 Score=35.68 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=34.6
Q ss_pred HHHhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 467 RILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 467 ~~L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
+.-.-|++.||-.=..++ |+.+...+++++|+.+|||+..|+..+.-|
T Consensus 19 N~~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 19 SHYRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp ----CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 344567777777666666 555667899999999999999998666544
No 246
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=60.75 E-value=6.9 Score=29.64 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=18.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 009449 492 KSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 492 ~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.+..+.|+.||||+.++...+.
T Consensus 34 gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3788999999999999975543
No 247
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=60.66 E-value=7 Score=30.41 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 009449 492 KSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 492 ~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.|+.++|+.||||+.+|++++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 4999999999999999999873
No 248
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=60.44 E-value=6.8 Score=33.53 Aligned_cols=42 Identities=12% Similarity=0.272 Sum_probs=33.0
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
.|++.+-.||...+. ..+.|..|||+.+|+++.+|..++.+-
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L 78 (147)
T 1z91_A 37 NITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRM 78 (147)
T ss_dssp CCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHH
Confidence 488888888876652 247899999999999999998655443
No 249
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=60.38 E-value=6.4 Score=35.46 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
..|.++||..+|+|+++|. |++++|++.
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 191 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEEQ 191 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 5899999999999999996 666777753
No 250
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=60.30 E-value=42 Score=27.48 Aligned_cols=26 Identities=8% Similarity=-0.060 Sum_probs=21.9
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHhhh
Q 009449 399 PEDIEIAKYTGLSLAEIRSASECLRI 424 (534)
Q Consensus 399 Pt~eEIA~~lgis~~kv~~~l~~~~~ 424 (534)
-+..+||+.+|++...|...+.....
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 47789999999999999988876653
No 251
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=60.11 E-value=7.6 Score=35.67 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
..|.++||..+|+|+++|. |++++|++.
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~~ 190 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIKE 190 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHHT
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 5899999999999999996 667777753
No 252
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=60.00 E-value=7.4 Score=33.87 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
..++|++|+|+.+|+|+.+|+++++--
T Consensus 14 ~~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 578999999999999999999998753
No 253
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=59.96 E-value=1.9 Score=43.98 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMT 517 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~ 517 (534)
+.+++..||...| ..++.|.+|||+.||+|+.||+..+.+..+
T Consensus 18 ~~~r~~~iL~~l~---~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 18 VLQERFQILRNIY---WMQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ----------------------------------------------
T ss_pred hhHHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566666666544 157899999999999999999987765433
No 254
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=59.76 E-value=58 Score=30.88 Aligned_cols=35 Identities=9% Similarity=-0.082 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHH
Q 009449 386 KARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (534)
Q Consensus 386 ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~ 420 (534)
++..-+.+......+.+++|+.+|+++..+..+.+
T Consensus 173 ~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33334444556678999999999999999987754
No 255
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=59.53 E-value=6 Score=32.46 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++|..++|+.+|||+.+|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999863
No 256
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=59.28 E-value=8.1 Score=35.58 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 174 ~~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVS----RVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 36799999999999999996 667777753
No 257
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=59.16 E-value=8.3 Score=35.07 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+.|.++||..+|+|+++|. |++++|++.
T Consensus 169 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 196 (220)
T 3dv8_A 169 KITHETIANHLGSHREVIT----RMLRYFQVE 196 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 7899999999999999996 667777753
No 258
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=59.08 E-value=7.5 Score=31.30 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
....+..|||+.||||..|||..+.+
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 35789999999999999999876543
No 259
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=58.92 E-value=64 Score=26.95 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 351 YA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elG-r~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
|..+.+.+.+.+.+........++..-+..+..+ ...| ...+..+||+.+|++...+..++....
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l--------~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le 72 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL--------YAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE 72 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 4455555556666555444444443322222221 1233 456899999999999999998876654
No 260
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=58.92 E-value=5.9 Score=33.17 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++|+.|+|+.+|||+.+|+++++-
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4789999999999999999999863
No 261
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=58.68 E-value=17 Score=33.81 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=36.5
Q ss_pred HHHHHH--hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 464 DVFRIL--ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 464 ~L~~~L--~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+...+ ..|++.|-.||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 36 ~~~~~l~~~gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 36 DWQQWLKPYDLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 2689999999877662 35799999999999999999765543
No 262
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=58.63 E-value=19 Score=29.78 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLF-HVSKEWIRKLEKKAMTKLR 520 (534)
Q Consensus 489 ~e~~Sl~EIA~~L-gISrerVRqi~~RAL~KLR 520 (534)
.-++|+.+||+.| |....||.....+.-+.+.
T Consensus 44 ~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 44 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp HSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999 8999999876666555443
No 263
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=58.51 E-value=32 Score=31.33 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=33.3
Q ss_pred HhhCCHHHHHHHhh-----HhcCCC------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 469 LESLDSRERQVLVL-----RYGLND------HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 469 L~~L~~rEReVL~L-----ryGL~d------~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+...+..+|-.-.+ ++|-.+ ..+.|.++||..+|+|+++|. |++++|++.
T Consensus 144 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 204 (227)
T 3d0s_A 144 LIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVN----KALADFAHR 204 (227)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 34567777754322 233210 236899999999999999996 666677753
No 264
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=57.99 E-value=13 Score=32.82 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~K 518 (534)
.|.++|... | .|.+..|+|..+|+|..+|++|..+..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456666554 5 48899999999999999999999776654
No 265
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=57.92 E-value=8.8 Score=35.08 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.1
Q ss_pred hhCCHHHHHHHhhH--hcCC---CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLR--YGLN---DHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 470 ~~L~~rEReVL~Lr--yGL~---d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..+++..+.-..+. -|+. ..+++|..|||+.+|||+.|++++...
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 44666665555432 2221 234799999999999999999998773
No 266
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=57.69 E-value=7 Score=35.12 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=29.1
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+|.-..||.+.. ..++|..|||+.+|+|+.+|++.+.
T Consensus 57 ~p~R~~IL~~L~----~~~~t~~eLa~~lgls~stvs~hL~ 93 (151)
T 3f6v_A 57 EPTRRRLVQLLT----SGEQTVNNLAAHFPASRSAISQHLR 93 (151)
T ss_dssp SHHHHHHHHHGG----GCCEEHHHHHTTSSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 566666776655 4679999999999999999986543
No 267
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=57.55 E-value=7.8 Score=32.82 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
++.+ |..++|+.||||+.+|+ +|+..|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3455 99999999999999996 67777764
No 268
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=57.44 E-value=89 Score=26.52 Aligned_cols=66 Identities=9% Similarity=0.045 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 350 TYA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
.|..+.+.+.+.+.+........++..-+..+..+ ...+...+..+||+.+|++...+..++...-
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA--------CEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 45555566666666655444344443322222211 1223334999999999999999998876554
No 269
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=57.33 E-value=6.6 Score=35.39 Aligned_cols=50 Identities=24% Similarity=0.140 Sum_probs=33.1
Q ss_pred HhhCCHHHHHHHhhH-----hcCCC-----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 469 LESLDSRERQVLVLR-----YGLND-----HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 469 L~~L~~rEReVL~Lr-----yGL~d-----~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+...+..+|-.-.|. +|-.. .-..|.++||..+|+|+++|. |++++|++.
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 166 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVS----KVLADLRRE 166 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHH----HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 345677776543332 22110 125899999999999999996 667777753
No 270
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=57.12 E-value=8.8 Score=35.09 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.+.|.++||..+|+|+++|. |++++|++.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 47899999999999999996 666777653
No 271
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=57.07 E-value=5.4 Score=36.26 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+-+|+.|+|+.|||++.+|+++++.
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHC
Confidence 4579999999999999999997653
No 272
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=56.89 E-value=8.6 Score=31.18 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEW----IRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrer----VRqi~~R 514 (534)
.++|++|+|+.+|||+.+ |+++++-
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 578999999999999999 8888764
No 273
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=56.69 E-value=10 Score=31.83 Aligned_cols=45 Identities=7% Similarity=0.153 Sum_probs=30.8
Q ss_pred HHHHHhhCCHHHH-HHHhhHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 009449 465 VFRILESLDSRER-QVLVLRYGLNDHRPKSLEEIGKLF-HVSKEWIRKLEK 513 (534)
Q Consensus 465 L~~~L~~L~~rER-eVL~LryGL~d~e~~Sl~EIA~~L-gISrerVRqi~~ 513 (534)
+..++..+..+-+ .||.... ..+.+..|||+.+ |+++.+|.+++.
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~----~~~~~~~eLa~~l~~is~~tvs~~L~ 58 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELF----QGTKRNGELMRALDGITQRVLTDRLR 58 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHH----HSCBCHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH----hCCCCHHHHHHHhccCCHHHHHHHHH
Confidence 3445666665543 4544433 2479999999999 999999976543
No 274
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=56.66 E-value=8.1 Score=35.41 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+.|.++||..+|+|+++|. |++++|++.
T Consensus 187 ~lt~~~lA~~lg~sr~tvs----R~l~~L~~~ 214 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAG----RVLKKLQAD 214 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 4799999999999999995 677777753
No 275
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.54 E-value=20 Score=28.39 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=37.7
Q ss_pred CCHHHHHHHhhHhcCCCCCC---------CCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 472 LDSRERQVLVLRYGLNDHRP---------KSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~---------~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+++.+..+|...| ... ....+||..+|++...|..+......|.|..
T Consensus 15 ft~~Q~~~Le~~F----~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 15 FSDRDLATLKKYW----DNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCHHHHHHHHHHH----TTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 6777888888888 333 2356899999999999999999888888764
No 276
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=56.23 E-value=9.6 Score=35.73 Aligned_cols=29 Identities=14% Similarity=0.199 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
-..|.++||..+|+|+++|. |++++|++.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvs----R~l~~L~~~ 220 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVT----RLLGDLREK 220 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred ccCCHHHHHHHHCCcHHHHH----HHHHHHHHC
Confidence 46899999999999999996 677777753
No 277
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=56.03 E-value=8.2 Score=35.29 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFS----RIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHH----HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 46799999999999999996 667777754
No 278
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=55.91 E-value=9.7 Score=35.71 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvs----R~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVS----RVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 46899999999999999996 667777753
No 279
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=55.72 E-value=9.7 Score=31.99 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=33.7
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH----VSKEWIRKLEKK 514 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg----ISrerVRqi~~R 514 (534)
..|++.|..|+..-+- ..+.|..|||+.++ +++.||..++.+
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~r 51 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITR 51 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHH
Confidence 3689999999887763 35799999999997 589999766654
No 280
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=55.60 E-value=4 Score=38.92 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=30.7
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCH--HHHHHHhCCCHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSL--EEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl--~EIA~~LgISrerVRqi~~ 513 (534)
.|++.+..++...|-|.. .+.|. .+||+.+|+++.+|+..+.
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~ 46 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVS 46 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 477777777766664432 35666 9999999999999976444
No 281
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=55.40 E-value=10 Score=33.00 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
++.+ |..++|+.||||+.+|| +|++.|..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr----~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATAR----NGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4556 89999999999999997 57777764
No 282
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=55.38 E-value=1.1e+02 Score=26.86 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 350 TYA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
.|..+.+.+.+.+.+........++..-+..+..+ ...+...+..|||+.+|++...+..++....
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI--------HQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH--------HHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH--------HHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 35555566666666665544444443322222221 1223457899999999999999998876654
No 283
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=55.24 E-value=12 Score=32.41 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=30.1
Q ss_pred hCCHHHHHHHhhHhcCC--CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLN--DHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~--d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.|-.|+...+... +....|..+||+.+|+|..+|.+++.+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~ 74 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRR 74 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 36666666555444321 224479999999999999999765544
No 284
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=54.94 E-value=76 Score=26.39 Aligned_cols=66 Identities=8% Similarity=-0.009 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 351 YA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
|..+.+.+.+.+.+........++..-+..+. .+....|...+..+||+.+|++...+..++....
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~-------~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le 75 (141)
T 3bro_A 10 RLLKIASNQMSTRFDIFAKKYDLTGTQMTIID-------YLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME 75 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH-------HHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH
Confidence 44445555555555444333334433222222 2222223367999999999999999998877654
No 285
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=54.92 E-value=5.8 Score=30.48 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 492 KSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 492 ~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
+|.+|+|+.||||+.||+++....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 578999999999999999887664
No 286
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=54.86 E-value=6.9 Score=36.81 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|.+|+|+.+|+|+.+|++++..
T Consensus 28 ~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 28 ELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999999864
No 287
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=54.82 E-value=8.6 Score=38.96 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=30.5
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
+..++||.+-. ..+++..|-+|||+.||||+.+|++.+..-
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L 43 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKKVIDQL 43 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556666553 112467999999999999999999988653
No 288
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=54.75 E-value=13 Score=34.56 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=30.9
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..|+|-|+-....++ + ..++|.++||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L-~--~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGRE-L--AKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHH-H--HTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHH-H--HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458887766554433 1 2478999999999999999998764
No 289
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=54.68 E-value=8.4 Score=33.48 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFH-----VSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~Lg-----ISrerVRqi~~ 513 (534)
..++|++|+|+.+| ||++.|+++++
T Consensus 22 ~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 22 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp TCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 46799999999998 99999999986
No 290
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=54.62 E-value=12 Score=32.27 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.6
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
++.+ |..++|+.||||+.+|+ +|+..|..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4455 69999999999999997 57777764
No 291
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=54.48 E-value=7.2 Score=32.61 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.++|+.++|+.+|||+.+|++++.
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 478999999999999999999886
No 292
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=54.37 E-value=9.6 Score=34.75 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|++|+|+.+|||+++|+++++-
T Consensus 21 ~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45899999999999999999999874
No 293
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=54.34 E-value=4.2 Score=33.59 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+..+ |..|||+.||||+.+|++ |++.|..
T Consensus 32 g~~lps~~eLa~~~~vSr~tvr~----al~~L~~ 61 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAAKTVSR----ALAVLKS 61 (102)
T ss_dssp TSBCCCHHHHHHHSSSCTTHHHH----HTTTTTT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4555 999999999999999975 5555553
No 294
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=54.17 E-value=2.7 Score=38.94 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 476 ERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 476 EReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
-+.|+.++ ..|+|..+||+.||||+.||..++...
T Consensus 148 ~~~i~~l~-----~~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 148 WEQAGRLL-----AQGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 34455554 368999999999999999999877654
No 295
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=53.96 E-value=23 Score=27.10 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=37.9
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 455666666666633322 3445778999999999999999998888887643
No 296
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=53.84 E-value=9.7 Score=34.67 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|++|+|+.+|||+++|+++++-
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35899999999999999999999864
No 297
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=53.82 E-value=9.3 Score=33.10 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=24.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
++.+ |..++|+.||||+.+|+ +|+..|..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVA----KAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4556 99999999999999997 57777764
No 298
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=53.67 E-value=12 Score=35.73 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 488 DHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 488 d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
.++.++..++|+.||||+.+|| +|++.|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3577899999999999999997 67777764
No 299
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=53.53 E-value=78 Score=26.59 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 351 YA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
|..+.+.+.+.+.+........++..-+..+..+.. . ...+..|||+.+|++...+..++....
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~-------~--~~~t~~eLa~~l~~~~~~vs~~l~~L~ 76 (143)
T 3oop_A 13 FDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIEA-------N--EPISQKEIALWTKKDTPTVNRIVDVLL 76 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHHH-------H--SSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH-------c--CCcCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 444455555555555544434444333333322221 1 346889999999999999988876654
No 300
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=53.23 E-value=58 Score=31.14 Aligned_cols=38 Identities=13% Similarity=-0.038 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHH
Q 009449 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (534)
Q Consensus 383 ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~ 420 (534)
.+.++..-+.+.+...++.++||+.+|+|...+..+..
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~ 41 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35556666666777889999999999999999988754
No 301
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.98 E-value=2.9 Score=37.48 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..++|++|||+.+|||+.+|++++.-
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp --------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 57899999999999999999998753
No 302
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=52.94 E-value=32 Score=26.40 Aligned_cols=55 Identities=2% Similarity=-0.099 Sum_probs=39.2
Q ss_pred hCCHHHHHHHhhHhc---CCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhh
Q 009449 471 SLDSRERQVLVLRYG---LNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525 (534)
Q Consensus 471 ~L~~rEReVL~LryG---L~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~ 525 (534)
.+|+.+..+|.-.|- -+.+ ....-.++|..+|+|...|..+......|.+..+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 467888888887773 1111 112357899999999999999999999999876543
No 303
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=52.71 E-value=21 Score=26.17 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=36.7
Q ss_pred hCCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
..++.+..+|...|--+.+ ....-.+||..+|++...|..+...-..|.|.
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4667777788777743322 12235689999999999999998877777765
No 304
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=52.68 E-value=73 Score=27.39 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=22.1
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHhhh
Q 009449 399 PEDIEIAKYTGLSLAEIRSASECLRI 424 (534)
Q Consensus 399 Pt~eEIA~~lgis~~kv~~~l~~~~~ 424 (534)
-+..+||+.+|++...|...+.....
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47789999999999999998876653
No 305
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=52.57 E-value=8 Score=30.52 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.-+|.+|+|+.|||++.+|+++...
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 4579999999999999999988754
No 306
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=52.48 E-value=30 Score=29.55 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=40.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|..+|.+.. ...++..|.++|.+.+ ..+..+|++.+.+-++||..
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 48999999887765 3446789999999988 67888999888888888864
No 307
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=52.40 E-value=11 Score=34.85 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
..|.++||..+|+|+++|. |++++|++.
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~~ 213 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQDN 213 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHHC
Confidence 5799999999999999995 677777753
No 308
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=52.29 E-value=12 Score=32.11 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+...|.+|||+.+|+|+.+|++ .+.+|++
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~----il~~L~~ 52 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQ----LVSPLRN 52 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4678999999999999999975 4555654
No 309
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=52.26 E-value=9.8 Score=33.53 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFH-----VSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~Lg-----ISrerVRqi~~ 513 (534)
..++|++|+|+.+| ||++.|+++++
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 36799999999999 99999999986
No 310
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=52.14 E-value=21 Score=32.87 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHh
Q 009449 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (534)
Q Consensus 383 ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~ 422 (534)
++.....++.++.|..||..|||+.+|++...+...+...
T Consensus 9 ~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 9 KVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 4445555666778999999999999999998888776654
No 311
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=52.12 E-value=9.2 Score=31.57 Aligned_cols=24 Identities=4% Similarity=0.108 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
...|..|||+.||||..|||..+.
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHH
Confidence 578999999999999999986554
No 312
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.94 E-value=18 Score=29.03 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=37.6
Q ss_pred CCHHHHHHHhhHhcCCC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 472 LDSRERQVLVLRYGLND-HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 472 L~~rEReVL~LryGL~d-~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.++.+..+|.-.|--+. -.....++||+.+|+|+..|..+......|.|+.
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 45566666666663322 2345567899999999999999999999888864
No 313
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=51.82 E-value=16 Score=32.27 Aligned_cols=47 Identities=11% Similarity=-0.046 Sum_probs=35.7
Q ss_pred hCCHHHHHHHhhHhcCC--CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLN--DHRPKSLEEIGKLFHVSKEWIRKLEKKAMT 517 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~--d~e~~Sl~EIA~~LgISrerVRqi~~RAL~ 517 (534)
.|++.|-.||...+.+. +....|.++||+.+|++...|.+++.+=.+
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48888888877766543 235679999999999999999776655443
No 314
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=51.72 E-value=8.3 Score=32.44 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
++|..|+|+.+|||..|+|.++..++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 36899999999999999999988754
No 315
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=51.55 E-value=13 Score=34.73 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=26.3
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+|++.|+.+-- ...-.|.+|+|+.||||..|||.=
T Consensus 12 eR~~~i~~~l~---~~~~~~~~~la~~~~vs~~TiRrD 46 (190)
T 4a0z_A 12 KRREAIRQQID---SNPFITDHELSDLFQVSIQTIRLD 46 (190)
T ss_dssp HHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCEeHHHHHHHHCCCHHHHHHH
Confidence 45566665544 234579999999999999999864
No 316
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=51.51 E-value=13 Score=28.14 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=19.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+.+..+.|+.||||+.++...+.
T Consensus 32 ~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 32 DYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp TTCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 44788999999999999986553
No 317
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=51.24 E-value=33 Score=29.81 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=47.0
Q ss_pred HHHHHHhhCCHHHHHHHhhHhcCCCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 464 DVFRILESLDSRERQVLVLRYGLNDHR---------PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 464 ~L~~~L~~L~~rEReVL~LryGL~d~e---------~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.|-.+--.|+..|+.||.+....-+.. ..+..|+++.+|++..+..+.+..|...|...
T Consensus 11 ~Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~r 78 (132)
T 1hkq_A 11 KLIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFNR 78 (132)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHTC
T ss_pred hHhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Confidence 344566789999999998876554322 25689999999999999999999999999764
No 318
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=50.78 E-value=47 Score=25.24 Aligned_cols=52 Identities=23% Similarity=0.214 Sum_probs=39.8
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|...
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 10 FTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 567777788877744332 2345679999999999999999988888877654
No 319
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=50.64 E-value=75 Score=26.82 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=40.7
Q ss_pred hhccCCcCCCchhhHHHHHHHHHHHHHHHHhc-cccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHH
Q 009449 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHA-RGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415 (534)
Q Consensus 337 ~ekFDp~kG~rFSTYA~~wIR~aI~~~lr~~s-r~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv 415 (534)
..+|++.. +-.|..+++.+.+.+.+...- ....++..-+..+..+ ...| ..+..+||+.+|++...+
T Consensus 4 M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~tv 71 (148)
T 3nrv_A 4 MQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAAV 71 (148)
T ss_dssp -CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHHH
T ss_pred cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHHH
Confidence 34455442 334555666666666655432 2223333322222222 1233 678999999999999999
Q ss_pred HHHHHHhh
Q 009449 416 RSASECLR 423 (534)
Q Consensus 416 ~~~l~~~~ 423 (534)
..++....
T Consensus 72 s~~l~~Le 79 (148)
T 3nrv_A 72 SRTVKKLE 79 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876654
No 320
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=50.57 E-value=38 Score=26.73 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHhhHhcC-C--CCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 458 RQHMKKDVFRILESLDSRERQVLVLRYGL-N--DHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 458 ~~el~e~L~~~L~~L~~rEReVL~LryGL-~--d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
...+..++. ..++++++.|....-|- + |+=..++.|||..+|++.+.|...
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~v 68 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKV 68 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHH
Confidence 555666666 35899999887765553 3 445578999999999999988643
No 321
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=50.44 E-value=20 Score=35.90 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=32.2
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
..++...|+.+.- +....|.+|||+.||||+.||++.+..-
T Consensus 3 ~~~r~~~Il~~L~---~~~~~s~~eLa~~l~vS~~ti~r~l~~L 43 (321)
T 1bia_A 3 DNTVPLKLIALLA---NGEFHSGEQLGETLGMSRAAINKHIQTL 43 (321)
T ss_dssp CCHHHHHHHHHHT---TSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH---cCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3466777776653 3467899999999999999999988753
No 322
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=49.71 E-value=22 Score=30.07 Aligned_cols=50 Identities=20% Similarity=0.105 Sum_probs=40.7
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|..+|.+.. ...++..|.++|.+.+ .++..+|+..+.+-++||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 38999998887765 2335789999999998 67889999999988888874
No 323
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=49.59 E-value=25 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
.++.|+.+||+.+|+|+.++.....+.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 468999999999999999998887766
No 324
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=49.46 E-value=19 Score=36.70 Aligned_cols=41 Identities=29% Similarity=0.444 Sum_probs=32.6
Q ss_pred CCHHHHHHHhh---HhcCCCCCCCCHHHHHHHh--CCCHHHHHHHHH
Q 009449 472 LDSRERQVLVL---RYGLNDHRPKSLEEIGKLF--HVSKEWIRKLEK 513 (534)
Q Consensus 472 L~~rEReVL~L---ryGL~d~e~~Sl~EIA~~L--gISrerVRqi~~ 513 (534)
+++|+++|+.. .| +..+++-+.+++|+.+ |||..|||+-+.
T Consensus 15 l~eR~~~IL~~i~~~y-l~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREY-IENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHH-HHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 88999999982 01 1226899999999999 999999997554
No 325
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=49.17 E-value=11 Score=31.01 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
++++.++|+..|||+++++.|++-
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 679999999999999999998753
No 326
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=49.15 E-value=25 Score=28.78 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
.++.|+.+||+.+|+|+.++.....+.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 567999999999999999998887765
No 327
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=49.06 E-value=26 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
..|+.+||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 8999999999999999998887766
No 328
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=49.04 E-value=15 Score=29.46 Aligned_cols=25 Identities=32% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHH-HHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEW-IRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrer-VRqi~~R 514 (534)
.+.|..|||+.+|+++.+ |..++.+
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~ 54 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDR 54 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHH
Confidence 379999999999999999 9765543
No 329
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=48.73 E-value=92 Score=25.73 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 351 YA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
|..+.+.+.+...+........++..-+..+..+ .. +...+..|||+.+|++...+..++....
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 5 GLLSIILRSHRVFIGRELGHLNLTDAQVACLLRI-------HR--EPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTCCHHHHHHHHHH-------HH--STTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-------HH--cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555554433333433322222211 11 2456899999999999999998877654
No 330
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=48.60 E-value=15 Score=34.65 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=28.8
Q ss_pred CHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 473 DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 473 ~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+|....||.+-. ..++|..|||+.+|+|.++|++++.
T Consensus 14 ~~~rl~IL~~L~----~~~~s~~eLa~~l~is~stvs~hLk 50 (202)
T 2p4w_A 14 NETRRRILFLLT----KRPYFVSELSRELGVGQKAVLEHLR 50 (202)
T ss_dssp SHHHHHHHHHHH----HSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 456666766554 4689999999999999999976543
No 331
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=48.57 E-value=1.6e+02 Score=26.77 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=86.5
Q ss_pred HHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCchhhHHHHHHHHHHHHHHHHhccccccccchHHH
Q 009449 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNRE 380 (534)
Q Consensus 301 I~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA~ekFDp~kG~rFSTYA~~wIR~aI~~~lr~~sr~iRlP~~~~~~ 380 (534)
+..-...+..++.++ +++ +-+.+.-..+++-+...+.-+|.+....+.-.+.-++.
T Consensus 9 l~~a~~~I~~~~~~L---~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr------------------- 64 (200)
T 1ais_B 9 LAFALSELDRITAQL---KLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACR------------------- 64 (200)
T ss_dssp HHHHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHc---CCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHH-------------------
Confidence 344455666666666 333 55666666666666555556665544433333333321
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccccccchhhhhhhcc-CCCCCCChHHHHHHH
Q 009449 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFA-PDRSVKSPKEIVMRQ 459 (534)
Q Consensus 381 i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~~~~~~l~e~i-~d~~~~spee~v~~~ 459 (534)
..|-..+..||+...+++..++..........+.++.+....+...+..-+ ..-. -+.+ + .+
T Consensus 65 -------------~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~--l~~~-v-~~ 127 (200)
T 1ais_B 65 -------------LLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELG--LSEK-V-RR 127 (200)
T ss_dssp -------------HHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHT--CCHH-H-HH
T ss_pred -------------HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcC--CCHH-H-HH
Confidence 123455777888888888887776655444433333222000111111100 0001 1111 1 11
Q ss_pred HHHHHHHHHHh-----hCCHHHHH--HHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009449 460 HMKKDVFRILE-----SLDSRERQ--VLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519 (534)
Q Consensus 460 el~e~L~~~L~-----~L~~rERe--VL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KL 519 (534)
.....+..+.. .-+|.--- +|.+-.-+. +.+.|.+||+...|++..+|++....-.+.|
T Consensus 128 ~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~-~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 128 RAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLE-GEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 12222333332 12333221 222211122 3678999999999999999987665544443
No 332
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=48.51 E-value=14 Score=35.04 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
..|.++||..+|+|+++|. |++++|++.
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~~ 244 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLEDQ 244 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 5799999999999999995 677777753
No 333
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=48.48 E-value=6 Score=37.67 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=30.3
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCC--HHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKS--LEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~S--l~EIA~~LgISrerVRqi~~R 514 (534)
.|++.+..+|...|-+.. ++.+ ..+||+.||+++.+|..++.+
T Consensus 3 ~lt~~~e~yL~~i~~l~~-~~~~~~~~~la~~l~vs~~tvs~~l~~ 47 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEE-EGVTPLRARIAERLEQSGPTVSQTVAR 47 (226)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 466777777776665432 2444 499999999999999865443
No 334
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=48.22 E-value=12 Score=32.85 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+.|..+||+.+|||+.+|+..+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 4689999999999999999764443
No 335
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=48.07 E-value=11 Score=29.37 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 009449 493 SLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 493 Sl~EIA~~LgISrerVRqi~~R 514 (534)
|+.|+|+.+|||+.+|+++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999863
No 336
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=47.96 E-value=3.8 Score=37.95 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RAL~KL 519 (534)
..|+|..+||+.||+|+.||..++.+....+
T Consensus 156 ~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~~ 186 (193)
T 3plo_X 156 AQGIPRKQVALIYDVALSTLYKKHPAKRAHI 186 (193)
T ss_dssp -------------------------------
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHHhhhHHhh
Confidence 3689999999999999999988776544433
No 337
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=47.94 E-value=28 Score=33.56 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.++|..+||+.+|||.++|++++.
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHh
Confidence 478999999999999999999997
No 338
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=47.65 E-value=32 Score=25.41 Aligned_cols=51 Identities=18% Similarity=0.155 Sum_probs=37.0
Q ss_pred hCCHHHHHHHhhHhcC---CCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGL---NDHR-PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL---~d~e-~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
.+++.+..+|.-.|.- ..+. ...-.+||..+|++...|..+......+.|.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3677778888777743 2111 1225688999999999999999888887764
No 339
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=47.14 E-value=17 Score=34.14 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
..+.+..+||+.||+++.+|+..+.+--
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 4689999999999999999999887643
No 340
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=47.14 E-value=21 Score=34.22 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=31.3
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..|+|-|+.....+.- ..++|.++||+.+|+|+.+|++.+.
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4688877765544431 2578999999999999999988764
No 341
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=47.01 E-value=23 Score=31.27 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
.+.++.||++.+|||+.+|.+++.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~ 59 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLR 59 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 479999999999999999976544
No 342
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=46.98 E-value=16 Score=34.40 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 488 DHRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 488 d~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
.|+.+ |-.|+|+.||||+.+|| .|++.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 35677 89999999999999997 57777764
No 343
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=46.68 E-value=32 Score=26.59 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=40.7
Q ss_pred hCCHHHHHHHhhHh---cCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhh
Q 009449 471 SLDSRERQVLVLRY---GLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCR 526 (534)
Q Consensus 471 ~L~~rEReVL~Lry---GL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~ 526 (534)
.+++.+..+|.-.| --+.+ ....-.+||..+|+|...|..+......+.|......
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 36777777887777 32221 1223467899999999999999999999998765543
No 344
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=45.99 E-value=13 Score=34.56 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHHHHHHHHhH
Q 009449 491 PKSLEEIGKLFHVSK-EWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 491 ~~Sl~EIA~~LgISr-erVRqi~~RAL~KLR~~ 522 (534)
..|.++||..+|+|+ ++|. |++++|++.
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~~ 197 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQE 197 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHHT
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHHC
Confidence 789999999999999 7995 677777653
No 345
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=45.37 E-value=13 Score=34.36 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 177 l~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 205 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLS----RAFSRLKAA 205 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHH----HHHHHHGGG
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 35789999999999999996 666677654
No 346
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=45.33 E-value=76 Score=32.24 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+...|.+|||+..|||..||++....-+..+-..+.
T Consensus 290 g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~ 325 (345)
T 4bbr_M 290 QIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVD 325 (345)
T ss_dssp ------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Confidence 367899999999999999999888776666655443
No 347
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=45.27 E-value=49 Score=25.20 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=39.2
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 566677777777644432 33456789999999999999999888888876543
No 348
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.09 E-value=28 Score=26.66 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=36.6
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 455666666666632221 2224578999999999999999988888887653
No 349
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=44.86 E-value=28 Score=26.75 Aligned_cols=52 Identities=13% Similarity=0.242 Sum_probs=37.0
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 556666666666633221 2224568999999999999999988888887654
No 350
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=44.37 E-value=29 Score=25.70 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=35.9
Q ss_pred CCHHHHHHHhhHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 472 LDSRERQVLVLRYGLNDHR-PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e-~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+++.+..+|...|..+.+. .....+||..+|++...|..+...-..|.|..
T Consensus 6 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 6 FTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 5677777777777433221 22356899999999999999988887777653
No 351
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=44.36 E-value=1.1e+02 Score=25.35 Aligned_cols=65 Identities=9% Similarity=0.115 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 350 TYA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
.|..+.+.+.+.+.+....+...++..-+..+..+ .. . ...+..+||+.+|++...+..++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~-~-~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 9 GRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSI-------RC-A-ACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHH-------HH-H-SSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH-------Hh-c-CCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 46666677777777666554444544333333222 11 2 246899999999999999998877654
No 352
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.33 E-value=31 Score=27.14 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=37.3
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+++.+..+|...|-...+ ......+||..+|++...|..+...-..|.|....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 455666666666632221 22345789999999999999999888888887643
No 353
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=44.33 E-value=43 Score=26.85 Aligned_cols=50 Identities=22% Similarity=0.136 Sum_probs=39.3
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|.++|.+.. ...++..|.++|.+.+ ..+..+|.+.+.+-++||..
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 76 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDI 76 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCC
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 48999999888766 3445789999999887 36788898888887777764
No 354
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=44.26 E-value=30 Score=28.42 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=39.9
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
|+++|..+|.+.. ...++..|.++|.+.+ ..+..+|...+.+-++||..
T Consensus 32 Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 32 MGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp CCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred cCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 8999999888765 3445789999999988 46788999988888888864
No 355
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.17 E-value=35 Score=32.85 Aligned_cols=25 Identities=12% Similarity=0.237 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
..+.|.+|||+.+|+++++|+..+.
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~ 200 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKIS 200 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 4689999999999999999987654
No 356
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=44.02 E-value=34 Score=25.96 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+++.+..+|.-.|--+.+ ......+||..+|++...|..+...-..|.|....
T Consensus 8 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 8 FTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 577788888888843322 11235689999999999999999988888886543
No 357
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=43.93 E-value=21 Score=34.15 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
++.+ |..|+|+.+|||+.||| +|+..|..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4556 89999999999999997 67777765
No 358
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=43.93 E-value=37 Score=27.07 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=40.2
Q ss_pred hCCHHHHHHHhhHh---cCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhh
Q 009449 471 SLDSRERQVLVLRY---GLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525 (534)
Q Consensus 471 ~L~~rEReVL~Lry---GL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~ 525 (534)
.+++.+..+|.-.| --+.+ ....-.+||..+|++...|..+......|.|.....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 36777888887777 22211 112346799999999999999999999999876543
No 359
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=43.90 E-value=10 Score=31.91 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=22.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 492 KSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 492 ~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
+|..|+|+.+|||+.|+|.++..++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6899999999999999999987643
No 360
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=43.59 E-value=47 Score=27.87 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
.-++|+.+||+.||-...||..-..+.-+.++.
T Consensus 48 ~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 48 LTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 368999999999999999997666655555443
No 361
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=43.32 E-value=33 Score=25.51 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=35.9
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+++.+..+|.-.|..+.+ ......+||..+|++...|..+...-..|.|.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 10 FSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 566777777777743322 12235689999999999999998877777663
No 362
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=43.20 E-value=24 Score=29.17 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
.++.|+.+||+.+|+|+.++.....+.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999999999999998877765
No 363
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=43.19 E-value=64 Score=28.25 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHhhHhcCC---CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 461 MKKDVFRILESLDSRERQVLVLRYGLN---DHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 461 l~e~L~~~L~~L~~rEReVL~LryGL~---d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+..++. ..++++++.|....-|-- |+-..+++|||+.+|++.+.|. ++++.++.
T Consensus 9 L~~Ql~---~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ~ 65 (130)
T 2k9m_A 9 LQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 65 (130)
T ss_dssp HHHHHH---HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred HHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 344454 368999998877666543 3345689999999999999885 55666664
No 364
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=43.18 E-value=10 Score=31.71 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
..+.|+.|+|+.+|||.+.|.++...-
T Consensus 47 ~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 47 HGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp TTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 457899999999999999999988764
No 365
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=43.17 E-value=1.6e+02 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 397 r~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
...+..+||+.+|++...+..++....
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357899999999999999998876654
No 366
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=43.12 E-value=33 Score=25.12 Aligned_cols=50 Identities=6% Similarity=0.075 Sum_probs=35.5
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+++.+..+|...|--+.+ ......+||..+|+|...|..+...-..|.|.
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 566677777777743322 12235689999999999999998887777663
No 367
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.09 E-value=1.4e+02 Score=24.71 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 396 Gr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
+...+..+||+.+|++...+..++....
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 3457999999999999999998877654
No 368
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=42.98 E-value=34 Score=25.36 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=36.0
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+++.+..+|...|.-+.+ ......+||..+|+|...|..+...-..+.|.
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 566677777777743322 12245689999999999999999888777664
No 369
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=42.91 E-value=1.5e+02 Score=24.86 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=22.4
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..+..+||+.+|++...+..++....
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 46899999999999999998877654
No 370
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=42.74 E-value=14 Score=30.17 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=24.1
Q ss_pred HHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 475 RERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 475 rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
-|+.+|..-+-- .+.+..+.|+.||||+.+++..+.
T Consensus 51 ~E~~~i~~aL~~---~~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 51 LERTLLTTALRH---TQGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHH---TTTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHH
Confidence 355555444311 234677999999999999976544
No 371
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=42.71 E-value=23 Score=33.91 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=24.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
++.+ |..|+|+.||||+.||| +|+..|...
T Consensus 31 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~~ 61 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVR----QALSNLVNE 61 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHHC
Confidence 4556 89999999999999997 577777753
No 372
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=42.65 E-value=91 Score=25.74 Aligned_cols=26 Identities=4% Similarity=0.054 Sum_probs=21.8
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..+..+||+.+|++...+..++....
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L~ 72 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRMK 72 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 46899999999999999888876554
No 373
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=42.52 E-value=15 Score=30.49 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=27.2
Q ss_pred HhhCCHHHH-HHHhhHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 009449 469 LESLDSRER-QVLVLRYGLNDHRPKSLEEIGKLF-HVSKEWIRKLEK 513 (534)
Q Consensus 469 L~~L~~rER-eVL~LryGL~d~e~~Sl~EIA~~L-gISrerVRqi~~ 513 (534)
+..+..+-+ .||...+ ..+.+..||++.+ |+++.+|.+++.
T Consensus 19 l~~l~~~~~~~IL~~L~----~~~~~~~eL~~~l~gis~~~ls~~L~ 61 (107)
T 2fsw_A 19 MQIFAGKWTLLIIFQIN----RRIIRYGELKRAIPGISEKMLIDELK 61 (107)
T ss_dssp HHHHTSSSHHHHHHHHT----TSCEEHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHcCccHHHHHHHHH----hCCcCHHHHHHHcccCCHHHHHHHHH
Confidence 344444433 3444333 3579999999999 599999976544
No 374
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.52 E-value=21 Score=27.61 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=37.4
Q ss_pred CCHHHHHHHhhHhcC---CC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGL---ND-HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL---~d-~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+++.+..+|.-.|-- +. -....-.+||..+|++...|..+......+.+..+.
T Consensus 14 ~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 14 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 566666666666621 11 112234678999999999999999999999887654
No 375
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=42.50 E-value=16 Score=34.00 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=28.5
Q ss_pred HHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 479 VLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 479 VL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
|+.-.| ..|+.++..++|+.||||+.+|| .|++.|..
T Consensus 25 I~~g~l--~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 25 ILNHEL--KLGEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp HHTTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCC--CCCCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444443 34577899999999999999997 67777764
No 376
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=42.45 E-value=14 Score=29.19 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.+|..|+|+.+|||..|+|.++.+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 479999999999999999999876
No 377
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=42.45 E-value=31 Score=28.70 Aligned_cols=50 Identities=16% Similarity=0.012 Sum_probs=39.7
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|..+|.+.. ...++..|.++|.+.+ ..+..+|...+.+-++||..
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 38999999887765 3345789999999988 56778999888888888864
No 378
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=42.38 E-value=1.6e+02 Score=25.13 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 350 TYA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
.|....+.+.+.+.+........++..-+..+..+.. ....+..+||+.+|++...+..++...-
T Consensus 25 ~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l~~---------~~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 25 GKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLYR---------EDGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHHHH---------SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---------CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555566666666666554444555444444433321 1345889999999999999998876554
No 379
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=42.23 E-value=23 Score=33.81 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=24.6
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
++.+ |..|+|+.+|||+.||| +|+..|...
T Consensus 26 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~~ 56 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTIT----KSLELLEQK 56 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHH----HHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHHHHH----HHHHHHHHC
Confidence 4566 89999999999999997 577777753
No 380
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=41.99 E-value=9.3 Score=34.11 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
...|.++||..+|+|+++|+.++++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 5789999999999999999866543
No 381
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=41.89 E-value=33 Score=28.07 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
++.|+++||+.+|+|+.++.....+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 68999999999999999998877765
No 382
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=41.87 E-value=1.2e+02 Score=26.20 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=22.2
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..+..+||+.+|++...+..++....
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~Le 92 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQLV 92 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56889999999999999998876654
No 383
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.73 E-value=57 Score=24.75 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=26.7
Q ss_pred HHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhh
Q 009449 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (534)
Q Consensus 389 ~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~ 424 (534)
+++..-....-+..|||+.+|++...|...+.....
T Consensus 22 ~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 22 RQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 333333456679999999999999999987765543
No 384
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=41.50 E-value=21 Score=27.65 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=19.1
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 009449 493 SLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 493 Sl~EIA~~LgISrerVRqi~ 512 (534)
|+.+.|+.||||..+|++.+
T Consensus 15 s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999986
No 385
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.46 E-value=19 Score=32.04 Aligned_cols=38 Identities=5% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+++.+.+++..... ..+.+..+||+.+|+|+.+|++.+
T Consensus 140 ~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 140 VDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp ---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHH
Confidence 45556666655541 357899999999999999997654
No 386
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=41.34 E-value=53 Score=24.97 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=38.7
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..+.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 9 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 577777888888843322 11235689999999999999999888877776543
No 387
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=40.91 E-value=1.8e+02 Score=25.16 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=23.4
Q ss_pred cCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 395 lGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
.|...+..|||+.+|++...+..++...-
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35556778999999999999998876654
No 388
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=40.81 E-value=2e+02 Score=25.86 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHcCCCHHHHHHH
Q 009449 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQH 289 (534)
Q Consensus 254 ~le~~~~~l~~~~g~~ps~~ewa~a~g~d~~~L~~~ 289 (534)
.+.+....+....|+.|+..+.+...|++.+.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (239)
T 1rp3_A 100 RIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKT 135 (239)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHH
Confidence 445566777788899999999999999988776543
No 389
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=40.78 E-value=54 Score=26.16 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=37.8
Q ss_pred CCHHHHHHHhhHhcCCC----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhh
Q 009449 472 LDSRERQVLVLRYGLND----HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETC 525 (534)
Q Consensus 472 L~~rEReVL~LryGL~d----~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~ 525 (534)
+++.+..+|.-.|.-+- -....-.+||..+|+|...|..+...+..+.+..+..
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 56666666665542110 1222456799999999999999999999998876543
No 390
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.32 E-value=46 Score=26.20 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=37.7
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 14 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 567777788888733221 1123568999999999999999887777777654
No 391
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=40.08 E-value=23 Score=28.83 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=19.0
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHH
Q 009449 399 PEDIEIAKYTGLSLAEIRSASEC 421 (534)
Q Consensus 399 Pt~eEIA~~lgis~~kv~~~l~~ 421 (534)
-|..++|+.+|++...+..+...
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46788999999999888888765
No 392
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=39.94 E-value=26 Score=34.26 Aligned_cols=29 Identities=24% Similarity=0.136 Sum_probs=24.3
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
++.+ |..|+|+.||||+.||| +|+..|..
T Consensus 50 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4566 89999999999999997 67777765
No 393
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=39.73 E-value=88 Score=26.46 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 397 r~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
...+..+||+.+|++...+..++....
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~ 82 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLE 82 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 467899999999999999888876554
No 394
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.64 E-value=1.5e+02 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=22.2
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..+..+||+.+|++...+..++....
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45889999999999999998877654
No 395
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=39.54 E-value=44 Score=25.01 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=36.3
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+++.+..+|...|-.+.+ ......+||..+|+|...|..+...-..|.|..
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 566666777777643322 223456899999999999999988887777753
No 396
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=39.24 E-value=43 Score=27.99 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=30.5
Q ss_pred hhCCHHHHHHHh-hHhcC--CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 470 ESLDSRERQVLV-LRYGL--NDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 470 ~~L~~rEReVL~-LryGL--~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
..|++.+-.|+. |...- -.+...++.+||+.+++++++++..+.+
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHH
Confidence 346777766666 43310 0235689999999999999999765443
No 397
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=39.18 E-value=23 Score=29.36 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=39.8
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|..+|.+.. ...++..|.++|.+.+ ..+..+|+..+.+-++||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 85 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhhc
Confidence 38899998887765 3345789999999998 56778899888888888864
No 398
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=39.05 E-value=61 Score=27.14 Aligned_cols=79 Identities=8% Similarity=0.016 Sum_probs=41.7
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhhhhcccccc--cccchhhhhhhccCCCCCCChHHHHHHHHHHHHHHHHHhhCCHH
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQK--IGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSR 475 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~--i~~~~~~~l~e~i~d~~~~spee~v~~~el~e~L~~~L~~L~~r 475 (534)
.-|-.++|+.+|++...+..+......+ +++.. +..--+.+..+++......... .....+...+..|++.
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~p-~~~~l~~ia~~l~v~~~~l~~~~~~~~~~------~~~~~l~~~~~~l~~~ 97 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQHP-SLQVLYDLVSLLNVSVDEFFLPASSQVKS------TKRRQLENKIDNFTDA 97 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCCC-CHHHHHHHHHHHTCCSHHHHSCCCCCCCC------HHHHHHHHHTTTCCHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCCC-CHHHHHHHHHHHCcCHHHHhCCCccccch------HHHHHHHHHHHcCCHH
Confidence 3477899999999999998887654322 33221 1111111111222211111110 1223466677888988
Q ss_pred HHHHHhhH
Q 009449 476 ERQVLVLR 483 (534)
Q Consensus 476 EReVL~Lr 483 (534)
++..+.-.
T Consensus 98 ~~~~i~~~ 105 (126)
T 3ivp_A 98 DLVIMESV 105 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877543
No 399
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=38.97 E-value=20 Score=31.64 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=29.0
Q ss_pred HHHHHHHhhHhcCCCCCCCCHHHHHHHhCC-CHHHHHHHHHHH
Q 009449 474 SRERQVLVLRYGLNDHRPKSLEEIGKLFHV-SKEWIRKLEKKA 515 (534)
Q Consensus 474 ~rEReVL~LryGL~d~e~~Sl~EIA~~LgI-SrerVRqi~~RA 515 (534)
+.-.+-|..+. ..|.|+.+|+...|| |+.||..++.+-
T Consensus 15 ~e~~e~I~~~i----~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 15 PEVADDICSLL----SSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp TTHHHHHHHHH----HTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----HCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 33333344455 479999999999999 899999998763
No 400
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=38.89 E-value=1.7e+02 Score=24.31 Aligned_cols=64 Identities=8% Similarity=-0.006 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 351 YA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
|..+.+.+.+...+........++..-+..+..+. .. ...+..+||+.+|++...+..++....
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~--------~~-~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYLVRVC--------EN-PGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHHHHHH--------HS-TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------HC-cCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 34444555555555544443444443333332221 12 245889999999999999998877654
No 401
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=38.79 E-value=58 Score=25.61 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|.-.|-.+.+ ......+||..+|++...|..+...-..|.|...
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 566666666666633221 1223568999999999999999988888888654
No 402
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=38.74 E-value=44 Score=26.12 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=37.8
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCR 526 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~ 526 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|......
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 455666666666632221 1223568999999999999999988888887655433
No 403
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=38.49 E-value=20 Score=29.09 Aligned_cols=22 Identities=5% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+-+..+.|+.|||++.+++..+
T Consensus 54 ~GN~s~AA~~LGISR~TLyrKL 75 (81)
T 1umq_A 54 DRNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHH
Confidence 3478899999999999997554
No 404
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=38.30 E-value=45 Score=28.69 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=28.5
Q ss_pred HHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 477 ReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
...+.+. .+|+|++|||..-|++..||-.++.+..
T Consensus 23 ~~t~~l~-----~~G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 23 VSIVQQI-----DRKVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp HHHHHHH-----HTTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHH-----HcCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455554 4899999999999999999988877764
No 405
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=38.18 E-value=36 Score=32.97 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=33.7
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.|-.||..-+.- ++.+.|..|||+.+++++++|..++.+
T Consensus 155 gLt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~i~~~tvt~~v~r 197 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQ-NKNIVLLKDLIETIHHKYPQTVRALNN 197 (250)
T ss_dssp SSCHHHHHHHHHHHTT-TTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-CCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 5999999998877621 113589999999999999999765544
No 406
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=38.08 E-value=23 Score=27.12 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=36.1
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 456666666666633221 1223568999999999999999988888777543
No 407
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=38.01 E-value=27 Score=31.42 Aligned_cols=22 Identities=5% Similarity=0.141 Sum_probs=20.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 009449 493 SLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 493 Sl~EIA~~LgISrerVRqi~~R 514 (534)
|++|+|+.+|+|+++|++++..
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999874
No 408
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=37.82 E-value=30 Score=25.64 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=34.0
Q ss_pred hCCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTK 518 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~K 518 (534)
.+++.+..+|.-.|--+.+ ......+||..+|+|...|..+......+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 3677788888877743322 12235688999999999999988766554
No 409
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=37.77 E-value=27 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=27.3
Q ss_pred HHhhHhcCCCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 479 VLVLRYGLNDHRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 479 VL~LryGL~d~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
|+.-.| ..|+.+ +-.++|+.||||+.+|| .|++.|..
T Consensus 17 I~~g~l--~pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 17 LRSGRL--KIGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp HHHTSS--CTTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCC--CCCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444333 345677 57899999999999997 67777764
No 410
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=37.72 E-value=1.3e+02 Score=24.92 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=22.5
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..+..+||+.+|++...+..++....
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 46899999999999999998877654
No 411
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=37.67 E-value=3e+02 Score=27.53 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 009449 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (534)
Q Consensus 383 ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~ 421 (534)
.+.++..-+.+......+.+++|+.+|++...+....+.
T Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~ 344 (412)
T 4fe7_A 306 AVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKE 344 (412)
T ss_dssp HHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455555666666777899999999999999999887653
No 412
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=37.53 E-value=28 Score=27.32 Aligned_cols=49 Identities=6% Similarity=0.003 Sum_probs=35.4
Q ss_pred HHHHHHHhhHhcCCC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 474 SRERQVLVLRYGLND-HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 474 ~rEReVL~LryGL~d-~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
..+..+|.-.|.-.. -......+||..+|+|+..|+.+...-..|+|+-
T Consensus 13 ~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 13 KEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp HHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 344455555553322 2445668899999999999999999999888864
No 413
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=37.47 E-value=11 Score=32.09 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=28.6
Q ss_pred HHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 478 QVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 478 eVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
.||.... ...+|+.|.|+.+|||.+.|..+.....
T Consensus 41 ~VV~~v~----~g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 41 AVVRGVI----YGLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp HHHHHHH----HTTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHH----hCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3555555 4689999999999999999999987753
No 414
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=37.38 E-value=26 Score=34.55 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHhhHhcCCCCCCCCHHHHHHHhC-------CCHHHHHHHHHHH
Q 009449 476 ERQVLVLRYGLNDHRPKSLEEIGKLFH-------VSKEWIRKLEKKA 515 (534)
Q Consensus 476 EReVL~LryGL~d~e~~Sl~EIA~~Lg-------ISrerVRqi~~RA 515 (534)
.|.+|.+.+ ..|+|..+||+.|+ +|+.||..+..+-
T Consensus 11 ~R~~i~~~~----~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCF----HLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHH----HTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 455666666 68999999999987 9999999988764
No 415
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=37.35 E-value=1.5e+02 Score=25.43 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 349 STYA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
-.|..+.+.+.+.+.+........++..-+..+..+. ..| ..+..+||+.+|++...+..++....
T Consensus 20 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~l~--------~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 20 LSYMIARVDRIISKYLTEHLSALEISLPQFTALSVLA--------AKP-NLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH--------HCT-TCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH--------HCC-CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455666666666666554443444433333332221 223 57899999999999999988876654
No 416
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=37.33 E-value=25 Score=33.82 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 486 LNDHRPK-SLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 486 L~d~e~~-Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+..++.+ |..|+|+.+|||+.||| +|+..|..
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3335566 99999999999999997 57777764
No 417
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=37.23 E-value=76 Score=24.30 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=38.2
Q ss_pred CCHHHHHHHhhHhcC-CCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGL-NDHR-PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL-~d~e-~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|...|-- ..+. .....+||..+|++...|..+...-..|.|...
T Consensus 8 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 8 MTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 577778888888832 2211 123578999999999999999888887777654
No 418
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=37.20 E-value=22 Score=33.88 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=25.7
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 487 NDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 487 ~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
..|+.++..++|+.||||+.+|| .|++.|..
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34577899999999999999997 57777764
No 419
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=36.70 E-value=33 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
...|.+|||+.+|+|+..|++++.
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~ 50 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVG 50 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 568999999999999999986543
No 420
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=36.47 E-value=26 Score=30.69 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+.+.|..+||+..|||+.++..+.
T Consensus 21 ~~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 21 YEATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999998653
No 421
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=36.30 E-value=1.8e+02 Score=24.33 Aligned_cols=26 Identities=4% Similarity=-0.075 Sum_probs=22.4
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..+..+||+.+|++...+..++....
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56889999999999999998877654
No 422
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=36.26 E-value=24 Score=30.62 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLF-HVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~L-gISrerVRqi~~R 514 (534)
.++++.||++.+ ||++.+|.+++.+
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 579999999999 7999999765543
No 423
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=36.24 E-value=26 Score=30.49 Aligned_cols=24 Identities=25% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 488 DHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 488 d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
|+++.|..+||+..|||+.++...
T Consensus 19 G~~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 19 GYNATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp TTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred CCccCCHHHHHHHhCCCchhHHHh
No 424
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=36.11 E-value=17 Score=32.09 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=33.1
Q ss_pred hCCHHHHHHHhhHh-cCCCCCCCCHHHHHH----Hh--CCCHHHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRY-GLNDHRPKSLEEIGK----LF--HVSKEWIRKLEKKAM 516 (534)
Q Consensus 471 ~L~~rEReVL~Lry-GL~d~e~~Sl~EIA~----~L--gISrerVRqi~~RAL 516 (534)
.|+-.|+.-|+.++ -- ..++|..+||+ .| ||+++||+.++...-
T Consensus 11 ~lT~~qK~~i~~~~~~~--~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQL--QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCCSHHHHHHHHHHHSS--SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 46666666666665 22 35789999999 99 999999999987643
No 425
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=36.01 E-value=29 Score=29.90 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 487 NDHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 487 ~d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
.|+.+.|..+||+..|||+.++...
T Consensus 24 ~G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 24 EGLNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp SCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCcccCCHHHHHHHhCCCcchHHHH
No 426
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=35.99 E-value=48 Score=23.97 Aligned_cols=48 Identities=6% Similarity=0.072 Sum_probs=34.0
Q ss_pred CCHHHHHHHhhHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHR-PKSLEEIGKLFHVSKEWIRKLEKKAMTKL 519 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e-~~Sl~EIA~~LgISrerVRqi~~RAL~KL 519 (534)
+++.+..+|...|-.+.+. .....+||..+|++...|..+...-..|.
T Consensus 9 ~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 9 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 5677778888777433221 22356889999999999999887665553
No 427
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=35.98 E-value=37 Score=28.38 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++.|+.+||+.+|+|+.++.....+
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46899999999999999998876543
No 428
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=35.84 E-value=28 Score=29.78 Aligned_cols=24 Identities=33% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 488 DHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 488 d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
|+.+.|..+||+..|||+.++..+
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 21 PPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred CCccCcHHHHHHHhCCCchhHHHH
Confidence 357799999999999999999875
No 429
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.78 E-value=27 Score=30.82 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+++.|..+||+..|||+.++..+.
T Consensus 30 ~~~~t~~~IA~~agvsk~tlY~~F 53 (192)
T 2fq4_A 30 FKAVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccccHHHHHHHcCCCHHHHHHHC
Confidence 678999999999999999998764
No 430
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=35.73 E-value=26 Score=30.68 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.+|...
T Consensus 25 ~~~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 25 YDGTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCChHHHHHH
Confidence 57899999999999999999864
No 431
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=35.69 E-value=24 Score=32.90 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=28.2
Q ss_pred HHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 479 VLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 479 VL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
|+.-.| ..|+.++..++|+.||||+..|| .|++.|..
T Consensus 29 I~~g~l--~pG~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 29 LELGTF--VPGQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCC--CCCCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444333 34678889999999999999997 67777764
No 432
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=35.64 E-value=1.8e+02 Score=23.80 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHhhh
Q 009449 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (534)
Q Consensus 350 TYA~~wIR~aI~~~lr~~sr~iRlP~~~~~~i~ki~ka~~~L~~elGr~Pt~eEIA~~lgis~~kv~~~l~~~~~ 424 (534)
.|..+.+.+.+.+.+...... .++..-+..+..+. ..| ..+..+||+.+|++...+..++.....
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~iL~~l~--------~~~-~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 14 GFILRQANQRYAALFANGIGN-GLTPTQWAALVRLG--------ETG-PCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHH--------HHS-SBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--------HcC-CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555666666554433 44433232332221 123 569999999999999999988776543
No 433
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=35.62 E-value=63 Score=26.45 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=39.6
Q ss_pred hCCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 471 SLDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
.+++.+..+|...|--+.+ ......+||..+|++...|..+...-..|.|...
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 4788888888888833221 1123578999999999999999988888877654
No 434
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=35.47 E-value=1.4e+02 Score=25.59 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=22.4
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..+..+||+.+|++...+..++....
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 46899999999999999998877654
No 435
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=35.47 E-value=35 Score=28.51 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=19.8
Q ss_pred CCCC--HHHHHHHh-CCCHHHHHHHHH
Q 009449 490 RPKS--LEEIGKLF-HVSKEWIRKLEK 513 (534)
Q Consensus 490 e~~S--l~EIA~~L-gISrerVRqi~~ 513 (534)
.+.+ +.||++.+ |||..++.+++.
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~ 65 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIK 65 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 3556 99999999 999999976543
No 436
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=35.37 E-value=28 Score=30.22 Aligned_cols=23 Identities=30% Similarity=0.095 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.++..+
T Consensus 20 y~~~s~~~Ia~~agvskgtlY~~ 42 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFYFH 42 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHH
T ss_pred CccCCHHHHHHHhCCCcHHHHHH
Confidence 67899999999999999999765
No 437
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=35.25 E-value=82 Score=24.21 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=37.7
Q ss_pred CCHHHHHHHhhHhcC-CCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGL-NDHR-PKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL-~d~e-~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
+++.+..+|.-.|-. ..+. .....+||..+|++...|..+...-..+.|...
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567777777777731 2221 223678999999999999999988877777654
No 438
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=35.23 E-value=42 Score=30.29 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
....|.+|||+.+|+|+..|++++ .+|++
T Consensus 42 ~~~~s~~eIA~~~~i~~~~l~kil----~~L~~ 70 (159)
T 3lwf_A 42 DGPISLRSIAQDKNLSEHYLEQLI----GPLRN 70 (159)
T ss_dssp SCCBCHHHHHHHHTCCHHHHHHHH----HHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH----HHHHH
Confidence 457899999999999999998654 45554
No 439
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=35.21 E-value=1.7e+02 Score=24.08 Aligned_cols=26 Identities=15% Similarity=-0.000 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHh
Q 009449 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (534)
Q Consensus 397 r~Pt~eEIA~~lgis~~kv~~~l~~~ 422 (534)
..-|.+|||+.+|+|..+|+.....+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56799999999999999999776543
No 440
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=35.00 E-value=53 Score=26.58 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=37.5
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR~ 521 (534)
.|+++|.++|.+.. ...++..|.++|.+.+ ..+..+|.+.+.+-++||..
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 38889988887765 3445778999999877 45677888888777777764
No 441
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.80 E-value=31 Score=26.96 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=36.6
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
.++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|+..
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 455555666655533322 3345678999999999999999988888877643
No 442
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=34.79 E-value=35 Score=27.25 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=41.0
Q ss_pred CCHHHHHHHhhHhcC---CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhhcc
Q 009449 472 LDSRERQVLVLRYGL---NDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528 (534)
Q Consensus 472 L~~rEReVL~LryGL---~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~~L 528 (534)
+++.+..+|.-.|.- +.+ ....-.+||..+|++...|..+......+.|.......+
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~~ 69 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPEL 69 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHHH
Confidence 677788888877743 111 112346799999999999999999999988876444333
No 443
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=34.66 E-value=32 Score=28.78 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=37.7
Q ss_pred CCHHHHHHHhhHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 009449 472 LDSRERQVLVLRYGLNDHRPKSLEEIGKLF-----HVSKEWIRKLEKKAMTKLR 520 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~e~~Sl~EIA~~L-----gISrerVRqi~~RAL~KLR 520 (534)
|+++|..+|.+.. ...++..|.++|.+.+ ..+..+|...+.+-++||.
T Consensus 29 Lt~~E~~lL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 29 LTGKEYVLLELLL-QRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCHHHHHHHHHHH-HTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred cCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 8999999887765 3446889999999988 4677788887777777774
No 444
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=34.65 E-value=36 Score=30.04 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+...|.+|||+.+|||+..|+++ +.+|++
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~ki----l~~L~~ 56 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKI----MSYLKQ 56 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 45789999999999999999765 445554
No 445
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.63 E-value=84 Score=23.36 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 397 r~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..-|..|||+.+|+|...|......+.
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 578999999999999999998766554
No 446
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=34.36 E-value=38 Score=32.63 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=27.2
Q ss_pred cCCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 395 lGr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
.||.|+.++||+.+|++.+++..++....
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 69999999999999999999999998775
No 447
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=34.34 E-value=54 Score=24.94 Aligned_cols=53 Identities=9% Similarity=0.156 Sum_probs=38.2
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+++.+..+|...|..+.+ ......+||..+|+|...|..+...-..+.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 566677777777743322 12235689999999999999999888888876543
No 448
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=33.98 E-value=47 Score=25.32 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=24.8
Q ss_pred cCCCCCHHHHHHHcCCCHHHHHHHHHHhhh
Q 009449 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (534)
Q Consensus 395 lGr~Pt~eEIA~~lgis~~kv~~~l~~~~~ 424 (534)
.+..-+..|||+.+|++...|...+.....
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345568899999999999999998877653
No 449
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.88 E-value=36 Score=28.46 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=35.6
Q ss_pred hhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009449 470 ESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLR 520 (534)
Q Consensus 470 ~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR 520 (534)
..|++.|+.|+.+..-- +.+|.+.++|...+|++..+|. +++++|-
T Consensus 33 ~~Lt~~E~lVy~~I~~a-Gn~GIw~kdL~~~tnL~~~~vt----kiLK~LE 78 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEIN----KILKNLE 78 (95)
T ss_dssp CSCSHHHHHHHHHHHHH-TTSCEEHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCHHHHH----HHHHHHH
Confidence 56889898888877622 2488999999999999998875 4555553
No 450
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.86 E-value=32 Score=27.18 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=34.0
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|..
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 444455555555522211 222356899999999999999998888877754
No 451
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.83 E-value=76 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHh
Q 009449 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (534)
Q Consensus 397 r~Pt~eEIA~~lgis~~kv~~~l~~~ 422 (534)
..-+..|||+.+|+|...|......+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999999999999866544
No 452
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=33.46 E-value=44 Score=32.30 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=32.2
Q ss_pred hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 471 SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.|++.|+.+|....-..++.+.+..++|+.||+++.++...+.+
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 46777777776433222346778999999999999999876555
No 453
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=33.38 E-value=33 Score=29.66 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 487 NDHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 487 ~d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
.|+.+.|..+||+..|||+.++...
T Consensus 25 ~G~~~~tv~~Ia~~agvs~~t~Y~~ 49 (195)
T 3ppb_A 25 QGFHGTSTATIAREAGVATGTLFHH 49 (195)
T ss_dssp TCSTTSCHHHHHHHHTCCHHHHHHH
T ss_pred cCcccCCHHHHHHHhCCChhHHHHH
No 454
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=33.36 E-value=57 Score=26.93 Aligned_cols=53 Identities=13% Similarity=-0.022 Sum_probs=37.5
Q ss_pred CCHHHHHHHhhHhcCCC----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGLND----HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL~d----~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
||+....||.-.|--.- -....-.+||..+|+|...|..+...+.++.+..+.
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 66677777766652100 112233579999999999999999999999987654
No 455
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=33.19 E-value=2.4e+02 Score=24.40 Aligned_cols=78 Identities=13% Similarity=-0.028 Sum_probs=53.8
Q ss_pred HhC-CCCchHHHHHHcCCCHHHHHHHHHhcHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh-hhccCC
Q 009449 265 ESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG-AERFDH 342 (534)
Q Consensus 265 ~~g-~~ps~~ewa~a~g~d~~~L~~~l~~G~~A~e~LI~~nlrLV~sIArrY~~~g~~~eDLiQEG~lgL~rA-~ekFDp 342 (534)
+.| ...|..+-|+++|++...+-.....-+.-+..++.....-+..........+.+..+.+...+..++.. +...++
T Consensus 29 ~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (212)
T 3knw_A 29 RKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQSW 108 (212)
T ss_dssp HHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC-------
T ss_pred HcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhccc
Confidence 346 568999999999999999888777666667777776666666655555555778888888777777666 544443
No 456
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=33.16 E-value=23 Score=27.75 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhHh
Q 009449 494 LEEIGKLFHVSKEWIRKLEKKAMTKLRDSE 523 (534)
Q Consensus 494 l~EIA~~LgISrerVRqi~~RAL~KLR~~l 523 (534)
..+||..+|++...|..+...-..|.|...
T Consensus 47 r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 47 LDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 468999999999999999999888888643
No 457
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=33.08 E-value=32 Score=30.35 Aligned_cols=23 Identities=26% Similarity=0.065 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.++..+
T Consensus 32 ~~~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 32 FVGVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHH
T ss_pred CccCCHHHHHHHhCCChHHHHHH
Confidence 57899999999999999999864
No 458
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=32.98 E-value=20 Score=30.69 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=16.1
Q ss_pred cCCCCCHHHHHHHcCCCH
Q 009449 395 HGKYPEDIEIAKYTGLSL 412 (534)
Q Consensus 395 lGr~Pt~eEIA~~lgis~ 412 (534)
.|+.||.+|+++++|++.
T Consensus 88 ~G~yPt~eEl~~~lgi~~ 105 (106)
T 3ktb_A 88 SQTYPTTKQMSEWTGVNL 105 (106)
T ss_dssp CSSCCCHHHHHHHHCCCC
T ss_pred eccCCCHHHHHHHhCCCC
Confidence 489999999999999863
No 459
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=32.88 E-value=37 Score=28.84 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
.++.|+.+||+.+|+|+.++..+..+.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999999999999998887765
No 460
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.83 E-value=42 Score=26.38 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=37.6
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 556666677666633221 12235689999999999999999888888876543
No 461
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=32.74 E-value=32 Score=30.13 Aligned_cols=23 Identities=17% Similarity=0.054 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.++..+
T Consensus 30 ~~~~t~~~Ia~~agvs~~t~Y~~ 52 (202)
T 3lwj_A 30 YYNTSIRDIIALSEVGTGTFYNY 52 (202)
T ss_dssp TTTCCHHHHHHHHCSCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCchhHHHH
Confidence 57899999999999999999874
No 462
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=32.68 E-value=1.6e+02 Score=24.30 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 009449 491 PKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 491 ~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
+-+..+.|+.||||+.+++..+.
T Consensus 71 ~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 71 LGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp TTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 34788999999999999976543
No 463
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=32.65 E-value=33 Score=29.92 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 487 NDHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 487 ~d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
.|+.+.|..+||+..|||+.++..+
T Consensus 33 ~G~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 33 RGIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp SCCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred cCcccccHHHHHHHhCCCHHHHHHH
No 464
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=32.56 E-value=74 Score=26.94 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKA 515 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RA 515 (534)
.+.+..|+|+.+|+++..++.++..+
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~l 44 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQA 44 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 57799999999999999998765443
No 465
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=32.51 E-value=11 Score=31.65 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=33.2
Q ss_pred HhhCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 009449 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFH----VSKEWIRKLEKK 514 (534)
Q Consensus 469 L~~L~~rEReVL~LryGL~d~e~~Sl~EIA~~Lg----ISrerVRqi~~R 514 (534)
...|++.|..|+...+- ..+.|..||++.++ ++..+|..++.+
T Consensus 30 ~~~LT~~e~~VL~~L~~---~~~~t~~eL~~~l~~~~~~s~sTVt~~L~r 76 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIWS---LGEARVDEIYAQIPQELEWSLATVKTLLGR 76 (99)
T ss_dssp -CCCCCSCSHHHHHHHH---HSCEEHHHHHHTCCGGGCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh---CCCCCHHHHHHHHhcccCCCHhhHHHHHHH
Confidence 45699999999887763 24799999999997 578999765544
No 466
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=32.34 E-value=67 Score=25.04 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=34.7
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSET 524 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~ 524 (534)
+++.+..+|...|-...+ ......+||..+|++...|..+...-..+.|....
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555522211 22235689999999999999999888887776543
No 467
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.32 E-value=26 Score=26.87 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=35.0
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.++.+..+|...|-.+.+ ......+||..+|++...|..+...-..|.|..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 455666666666633221 122356899999999999999998877776654
No 468
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.26 E-value=38 Score=26.17 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=37.5
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHhhhh
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCR 526 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~l~~~ 526 (534)
.++.+..+|...|-...+ ......+||..+|++...|..+...-..|.|..-...
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 455555566555532211 2334678999999999999999998888887654433
No 469
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=32.19 E-value=34 Score=30.63 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+.+.|..+||+..|||+.+|..+.
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2wui_A 29 VGTTAMADLADAAGVSRGAVYGHY 52 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccccCHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999998753
No 470
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=31.98 E-value=1.7e+02 Score=24.27 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=42.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHhhhhccccccccc-chhhhhhhccCCCCCCChHHHHHH--HHHHHHHHHHHhhCCHH
Q 009449 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD-CLNAKYLEFAPDRSVKSPKEIVMR--QHMKKDVFRILESLDSR 475 (534)
Q Consensus 399 Pt~eEIA~~lgis~~kv~~~l~~~~~~~SLD~~i~~-~~~~~l~e~i~d~~~~spee~v~~--~el~e~L~~~L~~L~~r 475 (534)
.+..|||+.+|++...+..++......--+....+. |.-.....+.+ .. ......+.. .........++..|++.
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~-~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTD-LA-RPIAEEHHHHHEHTLLTYEQVATQFTPN 129 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECG-GG-HHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECH-hH-HHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 788999999999999999887765432222211111 11111111111 00 011111110 23344566777889998
Q ss_pred HHHHHhhH
Q 009449 476 ERQVLVLR 483 (534)
Q Consensus 476 EReVL~Lr 483 (534)
|.+.+.-.
T Consensus 130 e~~~l~~~ 137 (146)
T 3tgn_A 130 EQKVIQRF 137 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 471
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=31.95 E-value=53 Score=25.97 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=37.7
Q ss_pred hCCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 471 SLDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 471 ~L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.+++.+..+|...|--+.+ ......+||..+|++...|..+...-..|.|..
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 3667777777777743322 122356899999999999999998888887764
No 472
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=31.78 E-value=36 Score=30.10 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.++...
T Consensus 30 ~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 30 FHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccccHHHHHHHhCCChHHHHHH
Confidence 57889999999999999999763
No 473
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=31.75 E-value=25 Score=31.80 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
+...|.+|||+.+|||+..|++++ .+|++
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil----~~L~~ 54 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNIL----SVLHK 54 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHH----HHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH----HHHHH
Confidence 467899999999999999998654 45554
No 474
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=31.69 E-value=62 Score=32.94 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.0
Q ss_pred HHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009449 477 RQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMT 517 (534)
Q Consensus 477 ReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~RAL~ 517 (534)
+.|+.+.+ ...+.|..|||+.+|+|+.||.++..+-+.
T Consensus 19 ~~il~~l~---~~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLID---QLGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHH---SSCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44666555 146899999999999999999987765443
No 475
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=31.35 E-value=24 Score=32.14 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRD 521 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~ 521 (534)
...|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp --------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36799999999999999996 55566654
No 476
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=31.18 E-value=62 Score=25.12 Aligned_cols=27 Identities=19% Similarity=-0.028 Sum_probs=23.4
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLRI 424 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~~ 424 (534)
.++..|||+.+|++...+...+.....
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999998876653
No 477
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.03 E-value=61 Score=25.78 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 396 Gr~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
-..-+..|||+.+|++...|...+..+.
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556999999999999999987765443
No 478
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=30.91 E-value=37 Score=29.92 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.++..+
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 32 VSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCceeehhh
Confidence 57899999999999999999864
No 479
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=30.79 E-value=47 Score=33.14 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
.++|++|+|+..|||..+|.++++-
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE~G 48 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIENG 48 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999999863
No 480
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=30.76 E-value=47 Score=34.39 Aligned_cols=51 Identities=20% Similarity=0.086 Sum_probs=36.9
Q ss_pred HHHHHHHHh--hCCHHHHHHHhhHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009449 462 KKDVFRILE--SLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEK 513 (534)
Q Consensus 462 ~e~L~~~L~--~L~~rEReVL~LryGL~d~e~~Sl~EIA~~LgISrerVRqi~~ 513 (534)
...+...+. .|++.|-.||...+.- ...++|..|||+.+++++.+|..++.
T Consensus 390 ~~~~~~~~~~~~lt~~q~~vl~~l~~~-~~~~~~~~~l~~~~~~~~~~~t~~~~ 442 (487)
T 1hsj_A 390 KKFFRDTKKKFNLNYEEIYILNHILRS-ESNEISSKEIAKCSEFKPYYLTKALQ 442 (487)
T ss_dssp HHHHHHHSSSCCCCHHHHHHHHHHHTC-SCSEEEHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhC-CCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 334444554 4999999888877621 11579999999999999999965443
No 481
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=30.74 E-value=37 Score=29.85 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 488 DHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 488 d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
|+.+.|..+||+..|||+.++...
T Consensus 33 G~~~~t~~~Ia~~agvs~~t~Y~~ 56 (213)
T 2qtq_A 33 DVVDISLSELSLRSGLNSALVKYY 56 (213)
T ss_dssp TSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred CcccccHHHHHHHhCCChhhHhHh
No 482
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=30.63 E-value=1.6e+02 Score=24.78 Aligned_cols=26 Identities=8% Similarity=-0.080 Sum_probs=22.0
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 398 ~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..+..+||+.+|++...+..++....
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36899999999999999988876654
No 483
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=30.59 E-value=36 Score=30.32 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.0
Q ss_pred hHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 482 LRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 482 LryGL~d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
...| +.+.|..+||+..|||+.+|..+
T Consensus 24 ~~~G---~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 24 YRKG---IARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp HHHC---TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHHCcCHHHHHHH
Confidence 4455 67899999999999999999874
No 484
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=30.53 E-value=35 Score=29.73 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 488 DHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 488 d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
|+.+.|..+||+..|||+.++..+
T Consensus 31 G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 31 GFHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp CTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred CcccccHHHHHHHhCCchHHHHHH
No 485
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=30.48 E-value=39 Score=30.12 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 487 NDHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 487 ~d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
.|+.+.|..+||+..|||+.++..+
T Consensus 46 ~G~~~~t~~~IA~~aGvs~~t~Y~~ 70 (222)
T 3bru_A 46 KGYSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp SCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCcCcHHHHHHHhCCCcchhhhh
No 486
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.46 E-value=37 Score=30.34 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+.+.|..+||+..|||+.++....
T Consensus 26 ~~~~s~~~IA~~aGvs~~tiY~~F 49 (202)
T 2d6y_A 26 IAGARIDRIAAEARANKQLIYAYY 49 (202)
T ss_dssp TTSCCHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999998754
No 487
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=30.44 E-value=23 Score=30.50 Aligned_cols=19 Identities=37% Similarity=0.892 Sum_probs=16.9
Q ss_pred cCCCCCHHHHHHHcCCCHH
Q 009449 395 HGKYPEDIEIAKYTGLSLA 413 (534)
Q Consensus 395 lGr~Pt~eEIA~~lgis~~ 413 (534)
.|+.||.+|+++++|++.+
T Consensus 85 ~G~yPt~eEl~~~lgi~~~ 103 (110)
T 3kgk_A 85 AGRYPKRAELARWFGIPLD 103 (110)
T ss_dssp ESSCCCHHHHHHHHTCCCC
T ss_pred eccCCCHHHHHHHhCCCcc
Confidence 4899999999999999754
No 488
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=30.31 E-value=29 Score=32.68 Aligned_cols=29 Identities=3% Similarity=0.118 Sum_probs=23.8
Q ss_pred CCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009449 486 LNDHRPKSLEEIGKLFHVSKEWIRKLEKK 514 (534)
Q Consensus 486 L~d~e~~Sl~EIA~~LgISrerVRqi~~R 514 (534)
+....+.|..++|+.||+|+.+|++.+.+
T Consensus 22 l~~~~~~s~s~aA~~L~isq~avSr~I~~ 50 (230)
T 3cta_A 22 ASNRAYLTSSKLADMLGISQQSASRIIID 50 (230)
T ss_dssp TSSEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 34456789999999999999999876644
No 489
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.21 E-value=88 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHhh
Q 009449 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (534)
Q Consensus 397 r~Pt~eEIA~~lgis~~kv~~~l~~~~ 423 (534)
..-|..|||+.+|+|...|......+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 678999999999999999998765544
No 490
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=30.06 E-value=35 Score=29.26 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHH
Q 009449 488 DHRPKSLEEIGKLFHVSKEWIRK 510 (534)
Q Consensus 488 d~e~~Sl~EIA~~LgISrerVRq 510 (534)
|+.+.|..+||+..|||+.++..
T Consensus 29 G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 29 DYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHTT
T ss_pred ChhHhhHHHHHHHhCCcHhhHHH
Confidence 36789999999999999999865
No 491
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=30.03 E-value=29 Score=30.20 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+.+.|..+||+..|||+.++..+.
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F 49 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMISYHF 49 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHS
T ss_pred cccCcHHHHHHHhCCCHHHHHHHc
Confidence 568999999999999999998754
No 492
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=30.01 E-value=38 Score=29.92 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.+|...
T Consensus 28 ~~~~s~~~IA~~aGvs~gtlY~y 50 (194)
T 2nx4_A 28 IEAANMRDIATEAGYTNGALSHY 50 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchHHHh
Confidence 67899999999999999999765
No 493
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=29.99 E-value=41 Score=29.52 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|.++||+..|||+.++..+
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~ 44 (185)
T 2yve_A 22 LETLSYDSLAEATGLSKSGLIYH 44 (185)
T ss_dssp STTCCHHHHHHHHCCCHHHHHHH
T ss_pred hhhccHHHHHHHhCCChHHHHHh
Confidence 67899999999999999999865
No 494
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.93 E-value=64 Score=26.12 Aligned_cols=51 Identities=8% Similarity=-0.017 Sum_probs=36.5
Q ss_pred CCHHHHHHHhhHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 009449 472 LDSRERQVLVLRYGLNDH-RPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522 (534)
Q Consensus 472 L~~rEReVL~LryGL~d~-e~~Sl~EIA~~LgISrerVRqi~~RAL~KLR~~ 522 (534)
.++.|..+|...|--+.+ ......+||..+|++...|..+...-..|.|..
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 566666666666633221 223457899999999999999998888887754
No 495
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=29.87 E-value=40 Score=29.75 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 487 NDHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 487 ~d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
.|+.+.|..+||+..|||+.++..+
T Consensus 47 ~G~~~~tv~~Ia~~agvs~~t~Y~~ 71 (218)
T 3dcf_A 47 KGYYATSLDDIADRIGFTKPAIYYY 71 (218)
T ss_dssp TCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCcccCcHHHHHHHhCCCHHHHHHH
No 496
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=29.85 E-value=25 Score=31.66 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009449 490 RPKSLEEIGKLFHVSKEWIRKLEKKAM 516 (534)
Q Consensus 490 e~~Sl~EIA~~LgISrerVRqi~~RAL 516 (534)
..+|..|+|+.+|||..|+|.++...+
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~~Gl 36 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYESKGL 36 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 357999999999999999999988764
No 497
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=29.81 E-value=30 Score=29.86 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 009449 488 DHRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 488 d~e~~Sl~EIA~~LgISrerVRqi 511 (534)
|+.+.|..+||+..|||+.++...
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 25 GYNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp CGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCchHHHHH
No 498
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=29.70 E-value=30 Score=30.36 Aligned_cols=24 Identities=4% Similarity=-0.017 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKLE 512 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi~ 512 (534)
+.+.|..+||+..|||+.++..+.
T Consensus 25 ~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 25 YDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp GGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred ccccCHHHHHHHhCCCHHHHHHHc
Confidence 578999999999999999998753
No 499
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=29.65 E-value=37 Score=29.91 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 009449 489 HRPKSLEEIGKLFHVSKEWIRKL 511 (534)
Q Consensus 489 ~e~~Sl~EIA~~LgISrerVRqi 511 (534)
+.+.|..+||+..|||+.++..+
T Consensus 36 ~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 36 FHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred cchhhHHHHHHHHCCChhHHHHh
Confidence 57899999999999999999875
No 500
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=29.63 E-value=77 Score=20.97 Aligned_cols=24 Identities=17% Similarity=-0.096 Sum_probs=20.4
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHh
Q 009449 399 PEDIEIAKYTGLSLAEIRSASECL 422 (534)
Q Consensus 399 Pt~eEIA~~lgis~~kv~~~l~~~ 422 (534)
-+..+||+.+|++...|..++...
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 478999999999999998887543
Done!