BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009453
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0C|A Chain A, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0F|X Chain X, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0F|A Chain A, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0D|X Chain X, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
pdb|3Q0D|A Chain A, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
Length = 167
Score = 166 bits (420), Expect = 3e-41, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 8/160 (5%)
Query: 199 LGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDA 258
+G VPGVE+GD F +RME+ L+G+H S +GIDYM D E VA SI+SSGGY+D
Sbjct: 3 IGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYM---KDDGGELVATSIVSSGGYNDVL 59
Query: 259 EDSDILIYSGQGGNANRK--GEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSS 316
++SD+LIY+GQGGN +K E DQ+L GNLAL+ S+ + + VRVIRG+K+ QSS
Sbjct: 60 DNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119
Query: 317 ---KVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
K YVYDGLY V+E W E G G +FK+KL RIPGQP
Sbjct: 120 VVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQP 159
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna
Complex In Space Group P42212
Length = 167
Score = 160 bits (404), Expect = 2e-39, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 8/160 (5%)
Query: 199 LGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDA 258
+G VPGVE+GD F +R E+ L+G+H S +GIDY D E VA SI+SSGGY+D
Sbjct: 3 IGTVPGVEVGDEFQYRXELNLLGIHRPSQSGIDYX---KDDGGELVATSIVSSGGYNDVL 59
Query: 259 EDSDILIYSGQGGNANRK--GEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSS 316
++SD+LIY+GQGGN +K E DQ+L GNLAL+ S+ + + VRVIRG+K+ QSS
Sbjct: 60 DNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119
Query: 317 ---KVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
K YVYDGLY V+E W E G G +FK+KL RIPGQP
Sbjct: 120 VVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQP 159
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 13/157 (8%)
Query: 379 DLSSGAEAIPIALINDVDDEKGPAYFTYLT----TVKYSKSFRLTQPSFGCNCYSACGPG 434
D++ G E IPI +N VD E P+ + Y++ T + +T + C C C
Sbjct: 33 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDDCS-- 89
Query: 435 NPNCSCVQKNGGDFPYTANGVLV-----SRKPLIYECGPSCPCNRDCKNRVSQTGLKVRL 489
+ NC C Q + + Y +G L+ + PLI+EC +C C R+C+NRV Q GL+ RL
Sbjct: 90 SSNCMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARL 148
Query: 490 DVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
+++T+D GWG+RSL I GTF+CEY GE++ +A
Sbjct: 149 QLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEA 185
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 13/157 (8%)
Query: 379 DLSSGAEAIPIALINDVDDEKGPAYFTYLT----TVKYSKSFRLTQPSFGCNCYSACGPG 434
D++ G E IPI +N VD E P+ + Y++ T + +T + C C C
Sbjct: 32 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDDCS-- 88
Query: 435 NPNCSCVQKNGGDFPYTANGVLV-----SRKPLIYECGPSCPCNRDCKNRVSQTGLKVRL 489
+ NC C Q + + Y +G L+ + PLI+EC +C C R+C+NRV Q GL+ RL
Sbjct: 89 SSNCMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARL 147
Query: 490 DVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
+++T+D GWG+RSL I GTF+CEY GE++ +A
Sbjct: 148 QLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEA 184
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 13/157 (8%)
Query: 379 DLSSGAEAIPIALINDVDDEKGPAYFTYLT----TVKYSKSFRLTQPSFGCNCYSACGPG 434
D++ G E IPI +N VD E P+ + Y++ T + +T + C C C
Sbjct: 34 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDDCS-- 90
Query: 435 NPNCSCVQKNGGDFPYTANGVLV-----SRKPLIYECGPSCPCNRDCKNRVSQTGLKVRL 489
+ NC C Q + + Y +G L+ + PLI+EC +C C R+C+NRV Q GL+ RL
Sbjct: 91 SSNCMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARL 149
Query: 490 DVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
+++T+D GWG+RSL I GTF+CEY GE++ +A
Sbjct: 150 QLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEA 186
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 13/157 (8%)
Query: 379 DLSSGAEAIPIALINDVDDEKGPAYFTYLT----TVKYSKSFRLTQPSFGCNCYSACGPG 434
D++ G E IPI +N VD E P+ + Y++ T + +T + C C C
Sbjct: 8 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDDCS-- 64
Query: 435 NPNCSCVQKNGGDFPYTANGVLV-----SRKPLIYECGPSCPCNRDCKNRVSQTGLKVRL 489
+ NC C Q + + Y +G L+ + PLI+EC +C C R+C+NRV Q GL+ RL
Sbjct: 65 SSNCMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARL 123
Query: 490 DVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
+++T+D GWG+RSL I GTF+CEY GE++ +A
Sbjct: 124 QLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEA 160
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 17/163 (10%)
Query: 375 LILPDLSSGAEAIPIALINDVDDEKGPAYFTYLT------TVKYSKSFRLTQPSFGCNCY 428
+I D++ G E +PI +N VD E P + Y++ T+ ++ Q C C
Sbjct: 11 IICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQ---HCTCV 67
Query: 429 SACGPGNPNCSCVQKNGGDFPYTANGVLVSR-----KPLIYECGPSCPCNRDCKNRVSQT 483
C + NC C Q + + Y +G L+ PLI+EC +C C R+CKNRV Q+
Sbjct: 68 DDCS--SSNCLCGQLSIRCW-YDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQS 124
Query: 484 GLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
G+KVRL +++T GWG+R+L I GTFICEY GE++ +A
Sbjct: 125 GIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEA 167
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 17/163 (10%)
Query: 375 LILPDLSSGAEAIPIALINDVDDEKGPAYFTYLT------TVKYSKSFRLTQPSFGCNCY 428
+I D++ G E +PI +N VD E P + Y++ T+ ++ Q C C
Sbjct: 9 IICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQ---HCTCV 65
Query: 429 SACGPGNPNCSCVQKNGGDFPYTANGVLVSR-----KPLIYECGPSCPCNRDCKNRVSQT 483
C + NC C Q + + Y +G L+ PLI+EC +C C R+CKNRV Q+
Sbjct: 66 DDCS--SSNCLCGQLSIRCW-YDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQS 122
Query: 484 GLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
G+KVRL +++T GWG+R+L I GTFICEY GE++ +A
Sbjct: 123 GIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEA 165
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 385 EAIPIALINDVDDEKGPAY-FTYLTTVKYSKSFRLTQPSF--GCNCYS--ACGPGNPN-C 438
E + L+N+VDDE P+ F +++ + ++ P+F GCNC S C NP+ C
Sbjct: 26 EGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRC 85
Query: 439 SCVQK--NGGDFPYTANG-VLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTK 495
C+ F Y A G V +IYEC C C+ +C NRV Q G + L++FKTK
Sbjct: 86 ECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTK 145
Query: 496 DRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
++GWG+RSL AGTFI Y GEV+ +A
Sbjct: 146 EKGWGVRSLRFAPAGTFITCYLGEVITSAEA 176
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1
Protein
Length = 239
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 29/182 (15%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PG+ +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 13 HYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDD 65
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE---------------RSLRR 298
+ + Y+G GG R EQ+ DQKL N AL + R
Sbjct: 66 VDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRS 125
Query: 299 ASEVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGA 355
VRV+R +K N ++ YDG+Y V + W EKGKSG +++Y L R +PG
Sbjct: 126 GKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGP 185
Query: 356 FA 357
+
Sbjct: 186 WT 187
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|B Chain B, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|C Chain C, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|D Chain D, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
Length = 212
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 29/181 (16%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PG+ +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 5 HYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDD 57
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE---------------RSLRR 298
+ + Y+G GG R EQ+ DQKL N AL + R
Sbjct: 58 VDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRS 117
Query: 299 ASEVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGA 355
VRV+R +K N ++ YDG+Y V + W EKGKSG +++Y L R +PG
Sbjct: 118 GKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGP 177
Query: 356 F 356
+
Sbjct: 178 W 178
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain
Length = 208
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 29/181 (16%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PG+ +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 8 HYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDD 60
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE---------------RSLRR 298
+ + Y+G GG R EQ+ DQKL N AL + R
Sbjct: 61 VDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRS 120
Query: 299 ASEVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGA 355
VRV+R +K N ++ YDG+Y V + W EKGKSG +++Y L R +PG
Sbjct: 121 GKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGP 180
Query: 356 F 356
+
Sbjct: 181 W 181
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf1
Length = 212
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 29/181 (16%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PG+ +G + FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 5 HYGPIPGIPVGTXWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDD 57
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE---------------RSLRR 298
+ + Y+G GG R EQ+ DQKL N AL + R
Sbjct: 58 VDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRS 117
Query: 299 ASEVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGA 355
VRV+R +K N ++ YDG+Y V + W EKGKSG +++Y L R +PG
Sbjct: 118 GKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGP 177
Query: 356 F 356
+
Sbjct: 178 W 178
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1
pdb|2ZO1|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 2
pdb|2ZO2|B Chain B, Mouse Np95 Sra Domain Non-Specific Dna Complex
pdb|3F8I|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3F8I|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3FDE|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
pdb|3FDE|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
Length = 212
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 28/177 (15%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PGV +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 6 HFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDD 58
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE--------------RSLRRA 299
++ + Y+G GG R Q++DQKL N AL R+
Sbjct: 59 VDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQG 118
Query: 300 SEVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
VRV+R MK + ++ YDG+Y V + W E+GKSG +++Y L R +P
Sbjct: 119 KPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEP 175
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg,
Crystal Structure In Space Group C222(1)
Length = 212
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 28/177 (15%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PGV +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 6 HFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDD 58
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE--------------RSLRRA 299
++ + Y+G GG R Q++DQKL N AL R+
Sbjct: 59 VDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQG 118
Query: 300 SEVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
VRV+R MK + ++ YDG+Y V + W E+GKSG +++Y L R +P
Sbjct: 119 KPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEP 175
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKD|B Chain B, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKE|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKF|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKG|A Chain A, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|B Chain B, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|C Chain C, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|D Chain D, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
Length = 210
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 28/177 (15%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PGV +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 19 HFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDD 71
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE--------------RSLRRA 299
++ + Y+G GG R Q++DQKL N AL R+
Sbjct: 72 VDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQG 131
Query: 300 SEVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
VRV+R MK + ++ YDG+Y V + W E+GKSG +++Y L R +P
Sbjct: 132 KPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEP 188
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 387 IPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSF--GCNCYSACGPGNPNCSCVQKN 444
+PI+++N DD F ++ K+ + SF GC+C S C C+ +
Sbjct: 10 LPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEM 69
Query: 445 GGD-------------FPYTANG---------VLVSRKPLIYECGPSCPCNRDCKNRVSQ 482
D F Y + G VL S++P IYEC C C++DC NRV +
Sbjct: 70 APDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEP-IYECHQGCACSKDCPNRVVE 128
Query: 483 TGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA-RQDGEGT 533
G V L +F+TKDRGWG++ I+ G F+ Y GE++ +A R+ E T
Sbjct: 129 RGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAEST 180
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 31/180 (17%)
Query: 362 IQRWKDGMSGRV---GLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRL 418
+QRW+D ++ R G+I + N VD E P+ F Y+ K + L
Sbjct: 27 LQRWQDELNRRKNHKGMIFVE-------------NTVDLEGPPSDFYYINEYKPAPGISL 73
Query: 419 T-QPSFGCNC----YSACGPGNPNCSCVQKNGGDFPYTANG-VLVSRKPLIYECGPSCPC 472
+ +FGC+C + C P + G Y N + + IYEC C C
Sbjct: 74 VNEATFGCSCTDCFFQKCCPA--------EAGVLLAYNKNQQIKIPPGTPIYECNSRCQC 125
Query: 473 NRDCKNRVSQTGLKVRLDVFKTKD-RGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGE 531
DC NR+ Q G + L +F+T + RGWG+++L I+ +F+ EY GEV+ +A + G+
Sbjct: 126 GPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQ 185
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 15/112 (13%)
Query: 419 TQPSF-GCNCY-SACGPGNPNCSCVQKNGGDFPYTANGVLVS-------RKPLIYECGPS 469
TQ +F GC C + C PG CSC++ Y N L +P ++EC
Sbjct: 55 TQITFPGCICVKTPCLPGT--CSCLRHGEN---YDDNSCLRDIGSGGKYAEP-VFECNVL 108
Query: 470 CPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVV 521
C C+ C+NRV Q GL+ VFKT +GWGLR+L+ I G F+CEYAGEV+
Sbjct: 109 CRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVL 160
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
pdb|3OLN|B Chain B, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
Length = 231
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 30/182 (16%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PG+ +G + FR+++ G+H + GI RS+ A S++ +GG+ D+
Sbjct: 29 HYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIH---GRSNDG----AYSLVLAGGFADE 81
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLAL---------------ERSLRR 298
+ D Y+G GG R G +ADQ L N AL R+ R
Sbjct: 82 VDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRA 141
Query: 299 ASEVRVIR---GMKDAINQSSKVYVYDGLYTVQESWTEKGKS-GCNIFKYKLVRIPGQPG 354
VRVIR G K + + YDG+Y V + W E S G +++Y L R +P
Sbjct: 142 GKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPA 201
Query: 355 AF 356
+
Sbjct: 202 PW 203
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 436 PNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPS-CPCNRDCKNRVSQTGLKVRLDVFKT 494
P C+C K + P + ++R L+YEC P+ CP C+N+ +++F+T
Sbjct: 43 PRCNC--KATDENPCGIDSECINRM-LLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRT 99
Query: 495 KDRGWGLRSLDPIRAGTFICEYAGEVVDKFKAR 527
RGWGLR+ I+ G F+ EY GE++D+ + R
Sbjct: 100 LQRGWGLRTKTDIKKGEFVNEYVGELIDEEECR 132
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 462 LIYECGP-SCPCNRDCKNRVSQTGLKVR-LDVFKTKDRGWGLRSLDPIRAGTFICEYAGE 519
+ EC P +CPC C N+ Q V+ L+ F+ +++GWG+R+ +P++AG FI EY GE
Sbjct: 47 IFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGE 106
Query: 520 VVDKFKAR 527
VV + + R
Sbjct: 107 VVSEQEFR 114
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 462 LIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVV 521
L+ EC CP C NR Q ++V T+ +GWGLR+ + + TF+ EY GEV+
Sbjct: 92 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVL 151
Query: 522 D--KFKAR 527
D +FKAR
Sbjct: 152 DHKEFKAR 159
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 450 YTANGVLVSRKPLIYECGPSCPCNRDC--KNRVSQTGLKVRLDVFKTK-----DRGWGLR 502
+ N +V+ L C CP C N V+ T + + +VFK ++ +G+
Sbjct: 118 FNTNATIVAT--LTAACAQHCPEAMICVIANPVNST-IPITAEVFKKHGVYNPNKIFGVT 174
Query: 503 SLDPIRAGTFICEYAG 518
+LD +RA TF+ E G
Sbjct: 175 TLDIVRANTFVAELKG 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,333,957
Number of Sequences: 62578
Number of extensions: 575571
Number of successful extensions: 1236
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 24
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)