Query 009453
Match_columns 534
No_of_seqs 334 out of 1187
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 13:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00466 SRA SET and RING fi 100.0 9.8E-60 2.1E-64 439.3 16.7 153 196-352 2-155 (155)
2 PF02182 SAD_SRA: SAD/SRA doma 100.0 6.1E-56 1.3E-60 414.7 13.4 153 196-352 1-155 (155)
3 KOG1082 Histone H3 (Lys9) meth 100.0 2.3E-32 4.9E-37 286.5 13.0 185 313-530 30-219 (364)
4 PF05033 Pre-SET: Pre-SET moti 99.9 5.5E-22 1.2E-26 172.4 7.0 100 379-479 1-103 (103)
5 smart00468 PreSET N-terminal t 99.8 6.7E-21 1.5E-25 164.9 8.1 94 377-471 1-98 (98)
6 KOG1141 Predicted histone meth 99.8 1.8E-21 4E-26 213.8 2.6 160 369-530 667-842 (1262)
7 KOG4442 Clathrin coat binding 99.7 5.4E-17 1.2E-21 178.0 4.6 117 401-530 41-163 (729)
8 KOG1079 Transcriptional repres 99.1 2.3E-11 5E-16 133.7 4.4 89 421-530 538-637 (739)
9 KOG1141 Predicted histone meth 99.0 9.6E-10 2.1E-14 122.7 7.1 154 372-528 872-1054(1262)
10 KOG1083 Putative transcription 98.3 6.1E-08 1.3E-12 111.0 -2.4 56 475-530 1165-1221(1306)
11 smart00317 SET SET (Su(var)3-9 97.5 0.00015 3.3E-09 61.9 5.3 42 488-529 1-42 (116)
12 smart00570 AWS associated with 96.4 0.0013 2.9E-08 51.4 1.2 26 460-485 25-50 (51)
13 KOG1080 Histone H3 (Lys4) meth 96.2 0.0021 4.6E-08 76.0 1.7 42 489-530 868-909 (1005)
14 KOG1085 Predicted methyltransf 96.1 0.0034 7.4E-08 64.7 2.7 50 483-532 252-301 (392)
15 COG2940 Proteins containing SE 94.8 0.017 3.6E-07 63.6 2.5 69 465-533 310-378 (480)
16 COG3440 Predicted restriction 94.3 0.00082 1.8E-08 69.2 -8.5 138 204-349 10-149 (301)
17 PF03638 TCR: Tesmin/TSO1-like 58.0 7.1 0.00015 29.7 1.7 37 422-480 3-40 (42)
18 KOG1171 Metallothionein-like p 45.8 7.2 0.00016 42.7 0.2 37 420-478 215-252 (406)
19 KOG3813 Uncharacterized conser 41.0 14 0.0003 41.6 1.4 42 422-479 307-349 (640)
20 PF08207 EFP_N: Elongation fac 30.9 1.3E+02 0.0028 23.9 5.1 35 315-349 7-42 (58)
21 PF11403 Yeast_MT: Yeast metal 29.2 39 0.00084 24.7 1.7 16 424-440 23-38 (40)
22 PF12218 End_N_terminal: N ter 26.8 34 0.00073 28.3 1.1 50 289-354 10-59 (67)
23 PRK03999 translation initiatio 24.8 1.2E+02 0.0026 28.0 4.5 38 314-351 12-51 (129)
No 1
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=100.00 E-value=9.8e-60 Score=439.31 Aligned_cols=153 Identities=58% Similarity=1.001 Sum_probs=145.6
Q ss_pred CCccccCCCCcCCceechHhHHHHhcccCcccCCcceeeccCCCCCCCeEEEEEecCCCCCCCCCCCeEEEEccCCCCCC
Q 009453 196 RKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANR 275 (534)
Q Consensus 196 ~k~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GId~~~~~~~~~~~~~A~SIV~SGgY~dd~D~gd~liYtG~GG~~~~ 275 (534)
.|+||+||||+|||+|+||+||+++|||+++|+|||+++.+ +++++|+|||+||+|+||+|+||+|+|||+||++.
T Consensus 2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~---~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~- 77 (155)
T smart00466 2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTAD---EGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDM- 77 (155)
T ss_pred CceEeCCCCccCCCEEcchhHhhhhcccCcccCCccccccc---CCCccEEEEEECCCccCcccCCCEEEEEccCCccC-
Confidence 58999999999999999999999999999999999999863 56799999999999999999999999999999864
Q ss_pred CCCcccCcccchhhHHHHHHHHhCCccEEEeccc-cccCCCCceeeeeCeeeeeeeEEecCCCcceeeeEeeeecCCC
Q 009453 276 KGEQAADQKLERGNLALERSLRRASEVRVIRGMK-DAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQ 352 (534)
Q Consensus 276 ~~~~~~DQkl~~gNlAL~~S~~~~~PVRVIRg~~-~~~~~~~k~YrYDGLY~V~~~w~e~g~~G~~v~kfkL~RlpgQ 352 (534)
+.+|..||+|++||+||++|+++++|||||||++ ...+.|.++|||||||+|+++|.|+|++|+.||||+|+|+|||
T Consensus 78 ~~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ 155 (155)
T smart00466 78 THGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155 (155)
T ss_pred CCCCccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence 6789999999999999999999999999999999 5567899999999999999999999999999999999999998
No 2
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=100.00 E-value=6.1e-56 Score=414.73 Aligned_cols=153 Identities=55% Similarity=0.928 Sum_probs=123.4
Q ss_pred CCccccCCCCcCCceechHhHHHHhcccCcccCCcceeeccCCCCCCCeEEEEEecCCCCCCCCCCCeEEEEccCCCCCC
Q 009453 196 RKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANR 275 (534)
Q Consensus 196 ~k~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GId~~~~~~~~~~~~~A~SIV~SGgY~dd~D~gd~liYtG~GG~~~~ 275 (534)
+|+|||||||+|||||++|+||+++|||+++|+|||+++.. +.++|+|||+||+|+||+|+||+|||||+||++..
T Consensus 1 ~k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~----g~~~A~SIV~Sg~y~dd~D~gd~l~YtG~gg~~~~ 76 (155)
T PF02182_consen 1 EKRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKE----GGPVAYSIVLSGGYEDDEDNGDVLIYTGQGGNDLS 76 (155)
T ss_dssp -TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEETTT----ESEEEEEEEESSSSTTCEECSSEEEEE-SSSB--T
T ss_pred CCcEeCCCCccCccEEhHHHHHhHhccCCCccCCeecccCC----CceeeEEEEECCCcccccCCCCEEEEEcCCCcccc
Confidence 47899999999999999999999999999999999998752 33679999999999999999999999999999777
Q ss_pred CCCcccCcccchhhHHHHHHHHhCCccEEEecccccc-CCCCce-eeeeCeeeeeeeEEecCCCcceeeeEeeeecCCC
Q 009453 276 KGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAI-NQSSKV-YVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQ 352 (534)
Q Consensus 276 ~~~~~~DQkl~~gNlAL~~S~~~~~PVRVIRg~~~~~-~~~~k~-YrYDGLY~V~~~w~e~g~~G~~v~kfkL~RlpgQ 352 (534)
+.+|..||+|++||+||++|+++++|||||||++... ++|..+ |||||||+|+++|.+++++|+.||||+|+|+|||
T Consensus 77 ~~~~~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~~~~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~kF~L~R~~gQ 155 (155)
T PF02182_consen 77 GNKQPKDQKLERGNLALANSMKTGNPVRVIRGYKLKSSYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFKFKLVRLPGQ 155 (155)
T ss_dssp TT-B-S---SSHHHHHHHHHSGGS-EEEEEEEGGGGGTTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE-TSS
T ss_pred cccccccccccchhHHHHHHHhcCCCeEEEeecCCCCccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEEEEEEECCCC
Confidence 7779999999999999999999999999999999874 455566 9999999999999999999999999999999998
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=2.3e-32 Score=286.53 Aligned_cols=185 Identities=36% Similarity=0.693 Sum_probs=159.7
Q ss_pred CCCCceeeeeCeeeeeeeEEecCCCcceeeeEeeeecCCCCCcchhhhhhhhhccCCCCcceeecCCCCCCccccCccee
Q 009453 313 NQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALI 392 (534)
Q Consensus 313 ~~~~k~YrYDGLY~V~~~w~e~g~~G~~v~kfkL~RlpgQp~~~svwk~~q~~~~~~~~r~~li~~DIS~G~E~~PV~vv 392 (534)
......++|+|.+.+...|. +......+.+.+..||+.|.|++||+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~d~~~~~e~~~v~~~ 77 (364)
T KOG1082|consen 30 SLDSLGLRPKGIASDIVAGM--------------------------------ANDKDKLEAKSELEDIALGSENLPVPLV 77 (364)
T ss_pred ccCccccccCCceeeehhhh--------------------------------cccccccccccccccccCccccCceeee
Confidence 34456678888888877666 1122345567889999999999999999
Q ss_pred ecCCCCCCCCceEEeeeeeecC-CCCCCCCCCCCcCCCCCCCCCC-CcccccccCCCCcccCCC---ccccCCCceeecC
Q 009453 393 NDVDDEKGPAYFTYLTTVKYSK-SFRLTQPSFGCNCYSACGPGNP-NCSCVQKNGGDFPYTANG---VLVSRKPLIYECG 467 (534)
Q Consensus 393 NdVD~e~~P~~F~Yi~~~~~~~-~~~~~~~~~gC~C~~~C~~~~~-~C~C~~~ngg~~~Y~~~G---~L~~~~~~i~EC~ 467 (534)
|+||++.. .+|+|+...++.. .........+|.|.+.|..... .|.|...|++.++|+.++ .++..+..+|||+
T Consensus 78 n~id~~~~-~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~EC~ 156 (364)
T KOG1082|consen 78 NRIDEDAP-LYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFECS 156 (364)
T ss_pred eeccCCcc-ccceeccccccCccccccCccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccccc
Confidence 99998876 8999999998887 4444567889999988876322 299999999999999988 7788899999999
Q ss_pred CCCCCCCCCCCceeccCceeceEEEEccCCCcceeecCcCCCCCeEEEeeeEEeCHHHHhhhc
Q 009453 468 PSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDG 530 (534)
Q Consensus 468 ~~C~C~~~C~NRvvQ~G~~~~LeVFrT~~kGWGVRa~~~I~~G~FIcEY~GEvIt~~E~~~~~ 530 (534)
+.|+|+.+|.|||+|+|++.+||||||..+|||||+++.|++|+|||||+||+++..|++++.
T Consensus 157 ~~C~C~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~ 219 (364)
T KOG1082|consen 157 VACGCHPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRT 219 (364)
T ss_pred cCCCCCCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999874
No 4
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.86 E-value=5.5e-22 Score=172.39 Aligned_cols=100 Identities=42% Similarity=0.906 Sum_probs=74.6
Q ss_pred CCCCCccccCcceeecCCCCCCCCceEEeeeeeecCCCC--CCCCCCCCcCCCCCCCCCCCcccccccCCCCcccCCCcc
Q 009453 379 DLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFR--LTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVL 456 (534)
Q Consensus 379 DIS~G~E~~PV~vvNdVD~e~~P~~F~Yi~~~~~~~~~~--~~~~~~gC~C~~~C~~~~~~C~C~~~ngg~~~Y~~~G~L 456 (534)
|||.|+|.+||+++|++|++.+|+.|+||+++++..++. ...+..+|+|.+.|.. ..+|+|..++++.++|+.+|+|
T Consensus 1 Dis~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~~C~~-~~~C~C~~~~~~~~~Y~~~g~l 79 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSGDCSN-PSNCECLQRNGGIFAYDSNGRL 79 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS-TBGGGTS----SSSSTC-TTTSHHHCCTSSS-SB-TTSSB
T ss_pred CCCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccccccccCccCccCCCCCC-CCCCcCccccCccccccCCCcC
Confidence 899999999999999999999889999999999998764 2456789999999954 4799999999988999999999
Q ss_pred c-cCCCceeecCCCCCCCCCCCCc
Q 009453 457 V-SRKPLIYECGPSCPCNRDCKNR 479 (534)
Q Consensus 457 ~-~~~~~i~EC~~~C~C~~~C~NR 479 (534)
. ....+||||++.|.|+.+|+||
T Consensus 80 ~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 80 RIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp SSSSTSEEE---TTSSS-TTSTT-
T ss_pred ccCCCCeEEeCCCCCCCCCCCCCC
Confidence 8 6889999999999999999998
No 5
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.83 E-value=6.7e-21 Score=164.95 Aligned_cols=94 Identities=38% Similarity=0.918 Sum_probs=84.7
Q ss_pred cCCCCCCccccCcceeecCCCCCCCCceEEeeeeeecCCCC---CCCCCCCCcCCCCCCCCCCCcccccccCCCCcc-cC
Q 009453 377 LPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFR---LTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPY-TA 452 (534)
Q Consensus 377 ~~DIS~G~E~~PV~vvNdVD~e~~P~~F~Yi~~~~~~~~~~---~~~~~~gC~C~~~C~~~~~~C~C~~~ngg~~~Y-~~ 452 (534)
+.|||+|+|++||++||+||++.+|..|+||++++++.++. ..++..||+|.+.|.+. .+|.|.+++++.++| ..
T Consensus 1 ~~Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~-~~C~C~~~~~~~~~Y~~~ 79 (98)
T smart00468 1 CLDISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSS-NKCECARKNGGEFAYELN 79 (98)
T ss_pred CccccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCC-CcCCcHhhcCCccCcccC
Confidence 47999999999999999999999889999999999998764 46788999999999984 459999999999999 77
Q ss_pred CCccccCCCceeecCCCCC
Q 009453 453 NGVLVSRKPLIYECGPSCP 471 (534)
Q Consensus 453 ~G~L~~~~~~i~EC~~~C~ 471 (534)
+++++..+++|||||+.|+
T Consensus 80 ~~~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 80 GGLRLKRKPLIYECNSRCS 98 (98)
T ss_pred CCEEeCCCCEEEcCCCCCC
Confidence 7788889999999999985
No 6
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.82 E-value=1.8e-21 Score=213.80 Aligned_cols=160 Identities=29% Similarity=0.536 Sum_probs=130.8
Q ss_pred CCCcceeecCCCCCCccccCcceeecCCCCCCCCceEEeeeeeecCCCC---CCCCCCCCcCCCCCCCCCCCccccccc-
Q 009453 369 MSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFR---LTQPSFGCNCYSACGPGNPNCSCVQKN- 444 (534)
Q Consensus 369 ~~~r~~li~~DIS~G~E~~PV~vvNdVD~e~~P~~F~Yi~~~~~~~~~~---~~~~~~gC~C~~~C~~~~~~C~C~~~n- 444 (534)
..-.+++-+.||+.|+|.+||..+|++|..+ |+.|.|..+.+-....- ..++..+|+|..+|.+ ...|+|.+..
T Consensus 667 ~p~kp~~~~~Di~~g~e~vpis~~neids~~-lpq~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid-~~kcachQltv 744 (1262)
T KOG1141|consen 667 NPLKPGNRCTDIPCGREHVPISEKNEIDSHR-LPQAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCID-SMKCACHQLTV 744 (1262)
T ss_pred CCcCCcceeccccCCccccccceeecccCcC-CccchhheeeccCCCcccccChhhhhcCCCCcchhh-hhhhhHHHHHH
Confidence 3445688899999999999999999999876 55899988877655421 2467899999999998 5899998742
Q ss_pred -------CCCC----cccCCCccccCCCceeecCCCCCCC-CCCCCceeccCceeceEEEEccCCCcceeecCcCCCCCe
Q 009453 445 -------GGDF----PYTANGVLVSRKPLIYECGPSCPCN-RDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTF 512 (534)
Q Consensus 445 -------gg~~----~Y~~~G~L~~~~~~i~EC~~~C~C~-~~C~NRvvQ~G~~~~LeVFrT~~kGWGVRa~~~I~~G~F 512 (534)
++.. -|....+....+..+|||+..|+|. +.|.||++|+|.+++|++|+|.+||||+|++++|.+|.|
T Consensus 745 k~~~t~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~f 824 (1262)
T KOG1141|consen 745 KKKTTGPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNF 824 (1262)
T ss_pred HhhccCCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceE
Confidence 1111 1333334445667899999999886 589999999999999999999999999999999999999
Q ss_pred EEEeeeEEeCHHHHhhhc
Q 009453 513 ICEYAGEVVDKFKARQDG 530 (534)
Q Consensus 513 IcEY~GEvIt~~E~~~~~ 530 (534)
||-|.|-++++.-.++.+
T Consensus 825 Vciy~g~~l~~~~sdks~ 842 (1262)
T KOG1141|consen 825 VCIYPGGALLHQISDKSE 842 (1262)
T ss_pred EEEecchhhhhhhchhhh
Confidence 999999999888776663
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=5.4e-17 Score=177.98 Aligned_cols=117 Identities=30% Similarity=0.579 Sum_probs=89.1
Q ss_pred CCceEEeeeeeecCCC--CCCC-CCCCCcCCCCCCCC-CCCcccccccCCCCcccCCCccccCCCceeecCC-CCC-CCC
Q 009453 401 PAYFTYLTTVKYSKSF--RLTQ-PSFGCNCYSACGPG-NPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGP-SCP-CNR 474 (534)
Q Consensus 401 P~~F~Yi~~~~~~~~~--~~~~-~~~gC~C~~~C~~~-~~~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~-~C~-C~~ 474 (534)
|..|.-+..+.|...- .... ..+.|+|...-.++ +..|+|... +.++....||++ .|. |+.
T Consensus 41 ~~~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~~-------------CiNr~t~iECs~~~C~~cg~ 107 (729)
T KOG4442|consen 41 LTKFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGED-------------CINRMTSIECSDRECPRCGV 107 (729)
T ss_pred chhhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCcc-------------ccchhhhcccCCccCCCccc
Confidence 4455555555554321 1122 56789998532221 245555421 223456789999 898 999
Q ss_pred CCCCceeccCceeceEEEEccCCCcceeecCcCCCCCeEEEeeeEEeCHHHHhhhc
Q 009453 475 DCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDG 530 (534)
Q Consensus 475 ~C~NRvvQ~G~~~~LeVFrT~~kGWGVRa~~~I~~G~FIcEY~GEvIt~~E~~~~~ 530 (534)
.|.|+.+|+....+++||+|+.|||||||..+|++|+||+||+||||+..|+++|.
T Consensus 108 ~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~ 163 (729)
T KOG4442|consen 108 YCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRV 163 (729)
T ss_pred cccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.14 E-value=2.3e-11 Score=133.67 Aligned_cols=89 Identities=31% Similarity=0.679 Sum_probs=77.4
Q ss_pred CCCCCcCCCCCCCCCCCcccccccCCCCcccCCCccccCCCceeecCCC-CCC-C---------CCCCCceeccCceece
Q 009453 421 PSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPS-CPC-N---------RDCKNRVSQTGLKVRL 489 (534)
Q Consensus 421 ~~~gC~C~~~C~~~~~~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~~-C~C-~---------~~C~NRvvQ~G~~~~L 489 (534)
...||.|.+.|.. ..|+|.. ...||.|. |.| + .+|.|--+|+|.+.++
T Consensus 538 rF~GC~Ck~QC~t--kqCpC~~-------------------A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~ 596 (739)
T KOG1079|consen 538 RFPGCRCKAQCNT--KQCPCYL-------------------AVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRV 596 (739)
T ss_pred cCCCCCccccccc--CcCchhh-------------------hccccCchHHhccCcccccccCccccccchhhhhhhcce
Confidence 4568888778876 4688865 34799974 753 3 3899999999999999
Q ss_pred EEEEccCCCcceeecCcCCCCCeEEEeeeEEeCHHHHhhhc
Q 009453 490 DVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDG 530 (534)
Q Consensus 490 eVFrT~~kGWGVRa~~~I~~G~FIcEY~GEvIt~~E~~~~~ 530 (534)
-+-.+.--||||+..+.+.+++||.||+||+|+..||++|+
T Consensus 597 llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRG 637 (739)
T KOG1079|consen 597 LLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRG 637 (739)
T ss_pred eechhhccccceeeccccCCCceeeeecceeccchhhhhcc
Confidence 99999999999999999999999999999999999999998
No 9
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.95 E-value=9.6e-10 Score=122.71 Aligned_cols=154 Identities=32% Similarity=0.567 Sum_probs=112.9
Q ss_pred cceeecCCCCCCccccCcceeecCCCCCCCC------ceEEeeeeeecCCCCCCCCCCCCcCCCCCCCCCCCccccccc-
Q 009453 372 RVGLILPDLSSGAEAIPIALINDVDDEKGPA------YFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKN- 444 (534)
Q Consensus 372 r~~li~~DIS~G~E~~PV~vvNdVD~e~~P~------~F~Yi~~~~~~~~~~~~~~~~gC~C~~~C~~~~~~C~C~~~n- 444 (534)
-.|+-..|.+.|.+.+|||++|.+|...+|. .|.|..+...+. ...++..+|+|.+.|.+. ..|.|.+..
T Consensus 872 ~~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~c~d~~~~~~~~~~~~~s~--~~~~~~~~~s~d~hp~d~-~~~~~~~~~~ 948 (1262)
T KOG1141|consen 872 DKGLDVADFSLGTSGIPIPLVNSVDNDEPPSCEDSKRRFQYNDQVDISS--VSRDFCSGCSCDGHPSDA-SKCECQQLSI 948 (1262)
T ss_pred ccccchhhhhccccCCCCccccccccCCCccccccceeecccccchhhh--hccccccccccCCCCccc-CcccCCCCCh
Confidence 3467788999999999999999999876542 233333221111 123567899999999884 789887642
Q ss_pred ---CCC-CcccCCCc--cc--------cCCCceeecCCCCCCCCCCCCceeccCceeceE--------EEEccCCCccee
Q 009453 445 ---GGD-FPYTANGV--LV--------SRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLD--------VFKTKDRGWGLR 502 (534)
Q Consensus 445 ---gg~-~~Y~~~G~--L~--------~~~~~i~EC~~~C~C~~~C~NRvvQ~G~~~~Le--------VFrT~~kGWGVR 502 (534)
++. -+...+|. +. ..+...+||+..|.|..+|.|+++|.+.+++.| ||+|..-|||++
T Consensus 949 ~~~~~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~ 1028 (1262)
T KOG1141|consen 949 EAMKRCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVR 1028 (1262)
T ss_pred hhhcCCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhhhcCCccceeeeeccccccccccccccccc
Confidence 111 11222331 11 123567999999999999999999999887654 678888999999
Q ss_pred ecCcCCCCCeEEEeeeEEeCHHHHhh
Q 009453 503 SLDPIRAGTFICEYAGEVVDKFKARQ 528 (534)
Q Consensus 503 a~~~I~~G~FIcEY~GEvIt~~E~~~ 528 (534)
...+||.-+|||||+|...++.-+++
T Consensus 1029 edtD~~~~~~~~~~~~~ppt~~l~~~ 1054 (1262)
T KOG1141|consen 1029 EDTDIPQSTFICTYVGAPPTDDLADE 1054 (1262)
T ss_pred ccccCCCCcccccccCCCCchhhHHH
Confidence 99999999999999999998876543
No 10
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=98.30 E-value=6.1e-08 Score=111.04 Aligned_cols=56 Identities=39% Similarity=0.726 Sum_probs=50.6
Q ss_pred CCCCceecc-CceeceEEEEccCCCcceeecCcCCCCCeEEEeeeEEeCHHHHhhhc
Q 009453 475 DCKNRVSQT-GLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDG 530 (534)
Q Consensus 475 ~C~NRvvQ~-G~~~~LeVFrT~~kGWGVRa~~~I~~G~FIcEY~GEvIt~~E~~~~~ 530 (534)
+|.|+.+|+ +.-.+|+||++..+||||++.++|++|+|||||+||||+.+|++.++
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~m 1221 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRM 1221 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccc
Confidence 377887764 56679999999999999999999999999999999999999999884
No 11
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.52 E-value=0.00015 Score=61.90 Aligned_cols=42 Identities=40% Similarity=0.873 Sum_probs=38.0
Q ss_pred ceEEEEccCCCcceeecCcCCCCCeEEEeeeEEeCHHHHhhh
Q 009453 488 RLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQD 529 (534)
Q Consensus 488 ~LeVFrT~~kGWGVRa~~~I~~G~FIcEY~GEvIt~~E~~~~ 529 (534)
+++++++..+||||++..+|++|++|+||.|+++...+...+
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~ 42 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEER 42 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHH
Confidence 468899999999999999999999999999999998776654
No 12
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=96.40 E-value=0.0013 Score=51.45 Aligned_cols=26 Identities=35% Similarity=0.809 Sum_probs=22.8
Q ss_pred CCceeecCCCCCCCCCCCCceeccCc
Q 009453 460 KPLIYECGPSCPCNRDCKNRVSQTGL 485 (534)
Q Consensus 460 ~~~i~EC~~~C~C~~~C~NRvvQ~G~ 485 (534)
+.+.+||...|+|+..|.||.+|+..
T Consensus 25 R~l~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 25 RMLLIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred HHHhhhcCCCCCCCcCccCcccccCc
Confidence 45789998899999999999999864
No 13
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=96.17 E-value=0.0021 Score=75.99 Aligned_cols=42 Identities=31% Similarity=0.536 Sum_probs=35.2
Q ss_pred eEEEEccCCCcceeecCcCCCCCeEEEeeeEEeCHHHHhhhc
Q 009453 489 LDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDG 530 (534)
Q Consensus 489 LeVFrT~~kGWGVRa~~~I~~G~FIcEY~GEvIt~~E~~~~~ 530 (534)
|.--+..-+||||++++.|.+|+||+||+||+|...-|+-|+
T Consensus 868 ~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE 909 (1005)
T KOG1080|consen 868 VKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLRE 909 (1005)
T ss_pred hccccccccccceeeccCccccceEEEeeceehhhhHHHHHH
Confidence 444466679999999999999999999999999777666555
No 14
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.13 E-value=0.0034 Score=64.66 Aligned_cols=50 Identities=24% Similarity=0.419 Sum_probs=40.8
Q ss_pred cCceeceEEEEccCCCcceeecCcCCCCCeEEEeeeEEeCHHHHhhhcCC
Q 009453 483 TGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEG 532 (534)
Q Consensus 483 ~G~~~~LeVFrT~~kGWGVRa~~~I~~G~FIcEY~GEvIt~~E~~~~~e~ 532 (534)
.|..-.|.+..-..||-||++.....+|+||.||.|.||.-.|+..++|-
T Consensus 252 ~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~ 301 (392)
T KOG1085|consen 252 KGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQ 301 (392)
T ss_pred hccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHH
Confidence 34444555555555999999999999999999999999999998888754
No 15
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=94.79 E-value=0.017 Score=63.63 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=56.8
Q ss_pred ecCCCCCCCCCCCCceeccCceeceEEEEccCCCcceeecCcCCCCCeEEEeeeEEeCHHHHhhhcCCC
Q 009453 465 ECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGT 533 (534)
Q Consensus 465 EC~~~C~C~~~C~NRvvQ~G~~~~LeVFrT~~kGWGVRa~~~I~~G~FIcEY~GEvIt~~E~~~~~e~~ 533 (534)
++...+.+...|.|...+........+..+..+||||++++.|++|+||.||.|+++...++..+.+.+
T Consensus 310 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~ 378 (480)
T COG2940 310 FSKSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENY 378 (480)
T ss_pred cccccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccc
Confidence 444444444567777777778888888899999999999999999999999999999999988877543
No 16
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=94.26 E-value=0.00082 Score=69.22 Aligned_cols=138 Identities=12% Similarity=-0.086 Sum_probs=110.0
Q ss_pred CCcCCceech-HhHHHHhcccCcccCCcceeeccCCCCCCCeEEEEEecCCCCCCCCCCCeEEEEccCCCCCCCCCcccC
Q 009453 204 GVEIGDIFFF-RMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAAD 282 (534)
Q Consensus 204 Gv~vGd~f~~-R~el~~~GlH~~~~~GId~~~~~~~~~~~~~A~SIV~SGgY~dd~D~gd~liYtG~GG~~~~~~~~~~D 282 (534)
++..+..+-. +.+..-.+.|-|++.++.+.+. ..+.+++.+|.|+++.+.+++..|++-|+. ..+..+..=
T Consensus 10 sf~~~~a~~~i~~~~~~~a~~kp~l~l~v~~~~-------~~~~~~~n~~~~~~e~~~~f~~l~~~~g~~-~~~~~~~~p 81 (301)
T COG3440 10 SFSQRNASLKIFGGNREAAPHKPILLLDVGRKI-------STFFITENQGIYETELIEPFIQLWSFFGPK-LQKYGVDAP 81 (301)
T ss_pred chhhhhhhhhhcccccccCCcCceeehhhHhhh-------hcccccccccccchhccchHHHHHhhcCcc-cccCCCCCc
Confidence 4444444444 5566778899999999987654 567899999999999999999999999986 334444455
Q ss_pred cccchhhHHHHHHHHhCCccEEEeccccc-cCCCCceeeeeCeeeeeeeEEecCCCcceeeeEeeeec
Q 009453 283 QKLERGNLALERSLRRASEVRVIRGMKDA-INQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRI 349 (534)
Q Consensus 283 Qkl~~gNlAL~~S~~~~~PVRVIRg~~~~-~~~~~k~YrYDGLY~V~~~w~e~g~~G~~v~kfkL~Rl 349 (534)
+.+..|+.+++.+++.+-+-++||+.... ...+-..+-|-|+|.+...|-++.-.+.++..|.+.++
T Consensus 82 ~~~l~~d~~~h~~~k~~~~~l~~~~~~~~~e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~~ 149 (301)
T COG3440 82 FELLQGDGKWHLDIKEGFDGLSIRTLPTEKEFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEVL 149 (301)
T ss_pred hHHhhccchhhhcccccCCccccCCCccHhhhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 56778999999999999999999998654 23344567888999999999999999998888888776
No 17
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=58.03 E-value=7.1 Score=29.66 Aligned_cols=37 Identities=43% Similarity=1.030 Sum_probs=29.0
Q ss_pred CCCCcCC-CCCCCCCCCcccccccCCCCcccCCCccccCCCceeecCCCCCCCCCCCCce
Q 009453 422 SFGCNCY-SACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRV 480 (534)
Q Consensus 422 ~~gC~C~-~~C~~~~~~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~~C~C~~~C~NRv 480 (534)
..+|.|. +.|.. .-|.|.... ..|++.|.| ..|.|..
T Consensus 3 ~~gC~Ckks~Clk--~YC~Cf~~g-------------------~~C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 3 KKGCNCKKSKCLK--LYCECFQAG-------------------RFCTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCCcccCcChhh--hhCHHHHCc-------------------CcCCCCccc-CCCCCcC
Confidence 4689996 57886 578898643 589999999 7898864
No 18
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=45.83 E-value=7.2 Score=42.65 Aligned_cols=37 Identities=38% Similarity=0.992 Sum_probs=30.5
Q ss_pred CCCCCCcCCC-CCCCCCCCcccccccCCCCcccCCCccccCCCceeecCCCCCCCCCCCC
Q 009453 420 QPSFGCNCYS-ACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKN 478 (534)
Q Consensus 420 ~~~~gC~C~~-~C~~~~~~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~~C~C~~~C~N 478 (534)
....||+|.. +|.. .-|.|.+.+ .-|+.+|.| ..|.|
T Consensus 215 ~hkkGC~CkkSgClK--kYCECyQa~-------------------vlCS~nCkC-~~CkN 252 (406)
T KOG1171|consen 215 RHKKGCNCKKSGCLK--KYCECYQAG-------------------VLCSSNCKC-QGCKN 252 (406)
T ss_pred hhcCCCCCccccchH--HHHHHHhcC-------------------CCccccccC-cCCcc
Confidence 3567999985 8986 589998754 579999999 78999
No 19
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=40.96 E-value=14 Score=41.59 Aligned_cols=42 Identities=31% Similarity=0.858 Sum_probs=27.2
Q ss_pred CCCCcCCCCCCCCCCCcccccccCCCCcccCCCccccCCCceeecCCCCCCC-CCCCCc
Q 009453 422 SFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCN-RDCKNR 479 (534)
Q Consensus 422 ~~gC~C~~~C~~~~~~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~~C~C~-~~C~NR 479 (534)
-.||+|..-|.+ ..|+|.+- |+-+.-....|- |+|. ..|.|-
T Consensus 307 eCGCsCr~~CdP--ETCaCSqa----------GIkCQvDr~~fP----CgC~rEgCgNp 349 (640)
T KOG3813|consen 307 ECGCSCRGVCDP--ETCACSQA----------GIKCQVDRGEFP----CGCFREGCGNP 349 (640)
T ss_pred hhCCcccceeCh--hhcchhcc----------CceEeecCcccc----cccchhhcCCC
Confidence 479999999998 58999862 332222222333 6676 579884
No 20
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=30.85 E-value=1.3e+02 Score=23.86 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=27.5
Q ss_pred CCceeeeeC-eeeeeeeEEecCCCcceeeeEeeeec
Q 009453 315 SSKVYVYDG-LYTVQESWTEKGKSGCNIFKYKLVRI 349 (534)
Q Consensus 315 ~~k~YrYDG-LY~V~~~w~e~g~~G~~v~kfkL~Rl 349 (534)
++..+.||| ||.|.++-..+...|...++.+|.-+
T Consensus 7 ~G~~i~~~g~~~~V~~~~~~k~gkg~a~v~~klknl 42 (58)
T PF08207_consen 7 KGMVIEIDGEPYVVLDFQHVKPGKGGAFVRVKLKNL 42 (58)
T ss_dssp TTSEEEETTEEEEEEEEEEECCTTSSSEEEEEEEET
T ss_pred CCCEEEECCEEEEEEEEEEECCCCCCeEEEEEEEEC
Confidence 456677866 89999998877666888888888766
No 21
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=29.25 E-value=39 Score=24.71 Aligned_cols=16 Identities=31% Similarity=1.273 Sum_probs=5.7
Q ss_pred CCcCCCCCCCCCCCccc
Q 009453 424 GCNCYSACGPGNPNCSC 440 (534)
Q Consensus 424 gC~C~~~C~~~~~~C~C 440 (534)
.|.|..+|.. +.+|+|
T Consensus 23 scscptgcns-ddkcpc 38 (40)
T PF11403_consen 23 SCSCPTGCNS-DDKCPC 38 (40)
T ss_dssp S-SS-TTTTS-STT--T
T ss_pred cCCCCCCCCC-CCcCCC
Confidence 4555555554 234554
No 22
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=26.78 E-value=34 Score=28.32 Aligned_cols=50 Identities=30% Similarity=0.325 Sum_probs=25.3
Q ss_pred hHHHHHHHHhCCccEEEeccccccCCCCceeeeeCeeeeeeeEEecCCCcceeeeEeeeecCCCCC
Q 009453 289 NLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPG 354 (534)
Q Consensus 289 NlAL~~S~~~~~PVRVIRg~~~~~~~~~k~YrYDGLY~V~~~w~e~g~~G~~v~kfkL~RlpgQp~ 354 (534)
..||-..++..++=++|-|.-. -|+|. . -..++-|+=-+|-..|+||||-
T Consensus 10 t~A~~a~l~a~~~g~~IDg~Gl-------------TykVs-~--lPd~srf~N~rF~~eri~gqpl 59 (67)
T PF12218_consen 10 TAAITAALEASPVGRKIDGAGL-------------TYKVS-S--LPDISRFKNARFVYERIPGQPL 59 (67)
T ss_dssp HHHHHHHHHHS-TTS-EE-TT--------------EEEES-S-----GGGEES-EEEE-SSTT--E
T ss_pred HHHHHHHHhccCCCeEEecCCc-------------eEEEe-e--CccHHhhccceEEEeecCCCce
Confidence 4577777777666666655321 24443 2 2345666667788899999985
No 23
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=24.77 E-value=1.2e+02 Score=28.04 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=29.3
Q ss_pred CCCceeeeeC-eeeeeeeE-EecCCCcceeeeEeeeecCC
Q 009453 314 QSSKVYVYDG-LYTVQESW-TEKGKSGCNIFKYKLVRIPG 351 (534)
Q Consensus 314 ~~~k~YrYDG-LY~V~~~w-~e~g~~G~~v~kfkL~Rlpg 351 (534)
.++....||| +|+|+++- .-+|+.|....+.+++-|-.
T Consensus 12 rkG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~t 51 (129)
T PRK03999 12 KEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFD 51 (129)
T ss_pred cCCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCC
Confidence 3567789999 99999965 44566688888888888754
Done!