Query 009455
Match_columns 534
No_of_seqs 167 out of 254
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 13:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2629 Peroxisomal membrane a 100.0 6.1E-42 1.3E-46 340.7 20.4 245 56-376 1-245 (300)
2 PF04695 Pex14_N: Peroxisomal 100.0 4.2E-33 9.1E-38 250.9 5.5 133 55-189 1-136 (136)
3 KOG2629 Peroxisomal membrane a 95.1 0.42 9.2E-06 49.8 13.1 158 155-322 81-247 (300)
4 PF07889 DUF1664: Protein of u 94.5 0.068 1.5E-06 49.4 5.3 116 160-279 5-120 (126)
5 PRK13454 F0F1 ATP synthase sub 93.0 0.91 2E-05 43.4 10.1 37 155-191 22-58 (181)
6 PRK06569 F0F1 ATP synthase sub 91.2 2.2 4.9E-05 40.8 10.3 15 177-191 23-37 (155)
7 PRK09174 F0F1 ATP synthase sub 90.9 2.3 4.9E-05 41.8 10.4 24 177-205 66-89 (204)
8 PRK13453 F0F1 ATP synthase sub 88.6 4.3 9.2E-05 38.4 10.0 31 157-191 15-45 (173)
9 PRK14471 F0F1 ATP synthase sub 87.1 6.3 0.00014 36.6 10.1 28 160-191 8-35 (164)
10 PF04799 Fzo_mitofusin: fzo-li 86.0 0.94 2E-05 44.1 4.1 99 168-281 49-163 (171)
11 PRK13460 F0F1 ATP synthase sub 85.9 7.5 0.00016 36.7 9.9 37 158-203 14-50 (173)
12 PRK06975 bifunctional uroporph 84.4 41 0.00089 38.4 16.6 24 159-182 323-346 (656)
13 PRK13461 F0F1 ATP synthase sub 84.0 12 0.00026 34.7 10.2 30 158-191 3-32 (159)
14 PRK10920 putative uroporphyrin 82.6 19 0.00042 39.0 12.5 27 156-182 33-59 (390)
15 PRK14472 F0F1 ATP synthase sub 82.6 13 0.00028 35.1 10.0 37 158-203 16-52 (175)
16 PF06103 DUF948: Bacterial pro 81.3 32 0.00069 29.0 12.2 60 216-275 29-88 (90)
17 PRK14473 F0F1 ATP synthase sub 80.1 19 0.0004 33.6 10.0 30 158-191 6-35 (164)
18 TIGR03321 alt_F1F0_F0_B altern 79.4 15 0.00033 36.6 9.8 30 158-191 3-32 (246)
19 PRK14474 F0F1 ATP synthase sub 79.2 16 0.00035 36.9 10.0 30 158-191 3-32 (250)
20 COG0711 AtpF F0F1-type ATP syn 78.6 18 0.00039 34.1 9.6 15 177-191 19-33 (161)
21 KOG3300 NADH:ubiquinone oxidor 78.5 3.4 7.4E-05 39.2 4.6 28 155-182 28-55 (146)
22 PRK07352 F0F1 ATP synthase sub 77.7 40 0.00087 31.8 11.6 28 158-185 17-44 (174)
23 CHL00118 atpG ATP synthase CF0 77.7 22 0.00048 33.0 9.8 33 162-203 24-56 (156)
24 PHA02681 ORF089 virion membran 76.8 5 0.00011 35.6 4.8 57 161-222 4-60 (92)
25 PRK08476 F0F1 ATP synthase sub 76.2 28 0.00061 32.1 9.9 22 177-203 20-41 (141)
26 PRK07353 F0F1 ATP synthase sub 74.7 34 0.00074 30.7 9.9 36 158-203 4-39 (140)
27 PRK10476 multidrug resistance 74.6 16 0.00035 37.4 8.7 33 156-188 6-38 (346)
28 PRK05759 F0F1 ATP synthase sub 72.1 38 0.00083 30.9 9.7 15 177-191 17-31 (156)
29 PRK13729 conjugal transfer pil 71.7 38 0.00082 37.9 11.1 55 214-275 62-117 (475)
30 PRK14475 F0F1 ATP synthase sub 71.2 35 0.00076 32.1 9.4 33 165-203 12-44 (167)
31 PF09527 ATPase_gene1: Putativ 70.4 5.2 0.00011 31.2 3.1 28 157-184 27-54 (55)
32 PRK06568 F0F1 ATP synthase sub 70.0 43 0.00093 32.1 9.7 34 162-203 5-38 (154)
33 PF07139 DUF1387: Protein of u 69.0 17 0.00036 38.5 7.3 77 209-285 171-259 (302)
34 PF00430 ATP-synt_B: ATP synth 67.8 49 0.0011 28.9 9.1 23 178-205 13-35 (132)
35 PRK11637 AmiB activator; Provi 66.0 24 0.00052 37.7 8.0 24 250-273 112-135 (428)
36 PF04375 HemX: HemX; InterPro 65.5 90 0.002 33.2 12.1 12 169-180 39-50 (372)
37 PRK10600 nitrate/nitrite senso 65.3 48 0.001 36.0 10.2 28 215-242 177-204 (569)
38 COG3883 Uncharacterized protei 63.7 34 0.00073 35.7 8.3 55 214-275 39-93 (265)
39 PRK06231 F0F1 ATP synthase sub 62.9 89 0.0019 30.8 10.7 12 178-189 62-73 (205)
40 PRK13428 F0F1 ATP synthase sub 62.4 49 0.0011 36.1 9.7 25 164-191 4-28 (445)
41 TIGR01144 ATP_synt_b ATP synth 61.7 54 0.0012 29.7 8.4 22 177-203 8-29 (147)
42 PF10805 DUF2730: Protein of u 60.0 1.1E+02 0.0025 27.2 9.9 21 165-185 12-32 (106)
43 PF08181 DegQ: DegQ (SacQ) fam 58.7 12 0.00025 29.5 3.0 36 246-281 2-37 (46)
44 PRK15048 methyl-accepting chem 57.4 1.3E+02 0.0028 32.8 11.8 11 178-188 210-220 (553)
45 PF04156 IncA: IncA protein; 57.0 1.5E+02 0.0032 27.9 10.8 60 174-235 54-114 (191)
46 PF06160 EzrA: Septation ring 56.2 33 0.00072 38.3 7.3 27 164-190 2-28 (560)
47 PF15654 Tox-WTIP: Toxin with 55.7 5.3 0.00011 32.6 0.8 32 159-192 11-42 (54)
48 PF02936 COX4: Cytochrome c ox 54.9 17 0.00036 34.3 4.1 34 156-189 70-103 (142)
49 PRK11107 hybrid sensory histid 54.8 1.2E+02 0.0025 34.4 11.2 15 174-188 192-206 (919)
50 PF08700 Vps51: Vps51/Vps67; 52.2 67 0.0015 26.5 6.8 61 215-278 21-81 (87)
51 PF06120 Phage_HK97_TLTM: Tail 51.8 41 0.0009 35.5 6.7 36 230-272 70-105 (301)
52 PRK09173 F0F1 ATP synthase sub 51.2 2E+02 0.0043 26.7 10.4 7 197-203 30-36 (159)
53 PF07851 TMPIT: TMPIT-like pro 51.0 76 0.0016 34.1 8.5 49 229-277 13-61 (330)
54 cd07321 Extradiol_Dioxygenase_ 50.9 11 0.00023 32.1 1.9 37 65-101 11-47 (77)
55 PF12072 DUF3552: Domain of un 49.7 1.5E+02 0.0033 28.8 9.9 20 165-184 4-23 (201)
56 PRK13455 F0F1 ATP synthase sub 49.2 1.9E+02 0.004 27.6 10.2 10 156-165 23-32 (184)
57 PF06212 GRIM-19: GRIM-19 prot 48.5 34 0.00073 32.1 4.9 29 155-183 24-52 (130)
58 PRK09793 methyl-accepting prot 48.0 1.8E+02 0.0039 31.8 11.1 28 251-278 285-312 (533)
59 TIGR00998 8a0101 efflux pump m 47.9 1.9E+02 0.004 29.2 10.4 28 158-185 2-29 (334)
60 PF06120 Phage_HK97_TLTM: Tail 47.8 1.2E+02 0.0026 32.2 9.3 12 170-181 32-43 (301)
61 MTH00169 ATP8 ATP synthase F0 47.7 18 0.00039 30.3 2.8 43 158-200 4-48 (67)
62 PF00015 MCPsignal: Methyl-acc 45.4 1.6E+02 0.0034 27.3 8.8 29 214-242 80-108 (213)
63 KOG0718 Molecular chaperone (D 44.7 37 0.0008 38.3 5.3 28 159-186 367-396 (546)
64 PRK15136 multidrug efflux syst 44.2 1.5E+02 0.0033 31.5 9.6 24 156-179 19-42 (390)
65 PF15005 IZUMO: Izumo sperm-eg 44.0 1.4E+02 0.0031 29.0 8.5 99 173-271 13-113 (160)
66 PRK08475 F0F1 ATP synthase sub 43.9 1.7E+02 0.0037 27.8 9.0 21 178-203 36-56 (167)
67 PRK04778 septation ring format 43.0 1E+02 0.0022 34.6 8.4 27 249-275 106-132 (569)
68 PRK14740 kdbF potassium-transp 42.8 37 0.00081 24.8 3.3 24 159-182 2-25 (29)
69 PRK15347 two component system 39.7 2.6E+02 0.0056 31.8 11.0 11 175-185 311-321 (921)
70 PRK15041 methyl-accepting chem 39.1 3.4E+02 0.0073 30.0 11.6 13 173-185 206-218 (554)
71 cd00922 Cyt_c_Oxidase_IV Cytoc 37.2 45 0.00097 31.3 3.9 29 159-187 73-101 (136)
72 PF06295 DUF1043: Protein of u 36.7 3E+02 0.0066 25.3 9.1 33 235-267 37-69 (128)
73 PRK06569 F0F1 ATP synthase sub 36.3 3.4E+02 0.0073 26.3 9.7 32 160-191 10-41 (155)
74 PF06936 Selenoprotein_S: Sele 36.3 45 0.00098 33.0 4.0 31 217-247 84-114 (190)
75 COG1566 EmrA Multidrug resista 35.6 2.4E+02 0.0051 30.5 9.4 33 155-187 10-42 (352)
76 COG3167 PilO Tfp pilus assembl 35.1 1.1E+02 0.0024 31.1 6.4 25 250-275 89-113 (211)
77 COG3850 NarQ Signal transducti 35.1 2.6E+02 0.0056 32.4 9.9 99 162-275 153-256 (574)
78 PF15061 DUF4538: Domain of un 35.0 34 0.00073 28.5 2.4 32 158-192 3-34 (58)
79 PF05791 Bacillus_HBL: Bacillu 34.7 4.1E+02 0.0089 25.7 10.1 30 251-280 152-181 (184)
80 PF02465 FliD_N: Flagellar hoo 34.5 64 0.0014 27.6 4.2 23 253-275 34-56 (99)
81 KOG4075 Cytochrome c oxidase, 33.8 36 0.00079 33.4 2.8 35 157-191 96-130 (167)
82 PRK06770 hypothetical protein; 33.3 2E+02 0.0043 28.8 7.7 19 227-245 67-85 (180)
83 PF12072 DUF3552: Domain of un 33.1 3.8E+02 0.0083 26.2 9.7 23 163-185 6-28 (201)
84 PF11932 DUF3450: Protein of u 32.9 3.1E+02 0.0066 27.4 9.2 11 334-344 150-160 (251)
85 PLN03196 MOC1-like protein; Pr 32.7 51 0.0011 36.5 4.1 33 70-102 113-149 (487)
86 KOG2391 Vacuolar sorting prote 32.2 7.2E+02 0.016 27.4 12.5 27 250-276 258-285 (365)
87 smart00803 TAF TATA box bindin 32.2 29 0.00062 28.6 1.6 28 58-99 38-65 (65)
88 PRK10935 nitrate/nitrite senso 31.9 3.5E+02 0.0076 28.8 10.0 28 215-242 205-232 (565)
89 PRK12705 hypothetical protein; 31.6 2.9E+02 0.0063 31.3 9.6 11 178-188 23-33 (508)
90 PF11598 COMP: Cartilage oligo 30.9 45 0.00097 26.4 2.4 22 250-271 17-38 (45)
91 PRK10559 p-hydroxybenzoic acid 30.9 3.8E+02 0.0082 27.6 9.7 35 167-201 12-46 (310)
92 cd07922 CarBa CarBa is the A s 30.4 19 0.00042 31.3 0.3 31 70-100 17-47 (81)
93 PRK10361 DNA recombination pro 29.1 4.2E+02 0.0092 29.9 10.3 20 250-269 101-120 (475)
94 PF14241 DUF4341: Domain of un 28.0 56 0.0012 26.7 2.6 21 155-175 41-61 (62)
95 PF12729 4HB_MCP_1: Four helix 27.6 4E+02 0.0087 23.0 10.4 49 216-264 75-125 (181)
96 PRK11677 hypothetical protein; 27.4 3.1E+02 0.0068 25.9 7.7 19 249-267 55-73 (134)
97 PF11598 COMP: Cartilage oligo 27.3 2.6E+02 0.0057 22.2 6.0 30 249-278 9-38 (45)
98 PRK13922 rod shape-determining 27.2 6.5E+02 0.014 25.3 11.0 25 168-195 17-41 (276)
99 PF10241 KxDL: Uncharacterized 26.7 4.2E+02 0.0091 22.9 9.0 51 222-272 17-67 (88)
100 PF05405 Mt_ATP-synt_B: Mitoch 26.4 1.5E+02 0.0032 27.6 5.5 25 171-195 20-44 (163)
101 PF02536 mTERF: mTERF; InterP 26.2 61 0.0013 32.8 3.1 27 76-102 242-268 (345)
102 PF10158 LOH1CR12: Tumour supp 25.9 5.6E+02 0.012 24.1 9.0 37 223-259 52-88 (131)
103 PF02536 mTERF: mTERF; InterP 25.7 61 0.0013 32.8 3.0 29 75-103 173-201 (345)
104 PF11887 DUF3407: Protein of u 25.5 1.1E+02 0.0024 31.2 4.8 65 218-286 54-118 (267)
105 PF09731 Mitofilin: Mitochondr 25.0 71 0.0015 35.3 3.6 23 158-180 2-24 (582)
106 PLN03196 MOC1-like protein; Pr 24.7 97 0.0021 34.4 4.5 29 75-103 338-366 (487)
107 PF09945 DUF2177: Predicted me 24.7 1E+02 0.0023 28.8 4.1 32 155-186 68-99 (128)
108 smart00733 Mterf Mitochondrial 24.7 58 0.0013 20.7 1.8 23 68-90 6-31 (31)
109 cd07595 BAR_RhoGAP_Rich-like T 24.0 3.5E+02 0.0076 27.6 8.0 43 213-255 162-204 (244)
110 PHA00426 type II holin 24.0 1.2E+02 0.0025 26.0 3.8 28 158-185 32-59 (67)
111 PF15079 DUF4546: Domain of un 23.8 3.1E+02 0.0068 27.5 7.2 50 212-263 50-100 (205)
112 smart00283 MA Methyl-accepting 23.7 6E+02 0.013 23.8 9.0 16 250-265 76-91 (262)
113 PF11932 DUF3450: Protein of u 23.3 3E+02 0.0064 27.5 7.2 40 236-275 58-97 (251)
114 PRK15041 methyl-accepting chem 23.2 4.6E+02 0.01 29.0 9.3 33 214-246 399-431 (554)
115 PRK11466 hybrid sensory histid 23.2 9.9E+02 0.021 27.5 12.1 16 256-271 447-462 (914)
116 PF08405 Calici_PP_N: Viral po 23.1 6.1E+02 0.013 27.8 9.7 51 219-269 283-333 (358)
117 PRK13729 conjugal transfer pil 23.0 1.8E+02 0.004 32.8 6.2 54 215-275 71-124 (475)
118 TIGR00778 ahpD_dom alkylhydrop 22.5 94 0.002 23.1 2.8 40 57-99 8-47 (50)
119 PF07889 DUF1664: Protein of u 22.4 2.5E+02 0.0055 26.3 6.1 84 183-282 19-102 (126)
120 cd00632 Prefoldin_beta Prefold 22.4 2.8E+02 0.0061 24.2 6.1 25 251-275 80-104 (105)
121 PF10660 MitoNEET_N: Iron-cont 22.3 29 0.00063 29.2 0.0 24 155-178 31-54 (64)
122 PF13801 Metal_resist: Heavy-m 22.2 3.5E+02 0.0076 22.4 6.5 33 234-266 73-105 (125)
123 PF10785 NADH-u_ox-rdase: NADH 21.8 1.1E+02 0.0023 26.8 3.3 27 156-182 18-44 (86)
124 PRK15048 methyl-accepting chem 21.8 5.3E+02 0.011 28.2 9.3 28 214-241 397-424 (553)
125 PF07960 CBP4: CBP4; InterPro 21.6 5.1E+02 0.011 24.6 7.9 36 159-195 4-46 (128)
126 COG5264 VTC1 Vacuolar transpor 21.5 1.1E+02 0.0023 29.1 3.4 28 156-183 31-58 (126)
127 smart00787 Spc7 Spc7 kinetocho 21.5 2.5E+02 0.0054 29.7 6.5 66 216-282 204-269 (312)
128 PF15141 DUF4574: Domain of un 21.4 43 0.00092 29.7 0.8 15 168-182 14-28 (84)
129 KOG3433 Protein involved in me 21.4 5.4E+02 0.012 26.2 8.4 44 232-275 100-143 (203)
130 KOG4580 Component of vacuolar 21.3 1.1E+02 0.0025 28.4 3.5 28 156-183 16-43 (112)
131 PF03672 UPF0154: Uncharacteri 21.3 1.1E+02 0.0023 26.0 3.1 25 164-189 2-26 (64)
132 PF14316 DUF4381: Domain of un 21.3 1.2E+02 0.0027 27.9 3.9 28 159-186 20-47 (146)
133 PF10498 IFT57: Intra-flagella 21.2 4.7E+02 0.01 28.4 8.6 29 157-186 215-244 (359)
134 COG1344 FlgL Flagellin and rel 21.0 4.4E+02 0.0095 27.8 8.2 56 216-278 67-128 (360)
135 PF14880 COX14: Cytochrome oxi 20.9 1.5E+02 0.0032 24.1 3.7 7 157-163 6-12 (59)
136 PRK11637 AmiB activator; Provi 20.9 3.6E+02 0.0078 29.0 7.7 49 230-278 201-249 (428)
137 PF10112 Halogen_Hydrol: 5-bro 20.8 7.6E+02 0.016 23.7 9.8 11 165-175 34-44 (199)
138 PF01708 Gemini_mov: Geminivir 20.8 1.5E+02 0.0031 26.8 3.9 41 155-195 29-72 (91)
139 KOG2150 CCR4-NOT transcription 20.6 1.3E+02 0.0029 34.6 4.6 62 213-283 5-66 (575)
140 PF10661 EssA: WXG100 protein 20.6 1.2E+02 0.0027 28.7 3.8 27 159-185 118-144 (145)
141 PF07412 Geminin: Geminin; In 20.5 4.8E+02 0.01 26.5 7.9 69 214-283 108-178 (200)
142 PF11282 DUF3082: Protein of u 20.4 1.3E+02 0.0028 26.5 3.5 25 162-186 6-30 (82)
143 PF12821 DUF3815: Protein of u 20.3 1.3E+02 0.0028 27.1 3.7 25 163-187 23-47 (130)
144 PF10168 Nup88: Nuclear pore c 20.1 3E+02 0.0066 32.3 7.4 17 82-98 402-418 (717)
145 PF09682 Holin_LLH: Phage holi 20.0 6.2E+02 0.014 22.5 8.3 32 159-191 3-34 (108)
146 PF08317 Spc7: Spc7 kinetochor 20.0 5E+02 0.011 27.1 8.4 9 155-163 134-142 (325)
147 KOG1029 Endocytic adaptor prot 20.0 3.1E+02 0.0068 33.2 7.4 34 329-365 740-773 (1118)
No 1
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-42 Score=340.68 Aligned_cols=245 Identities=28% Similarity=0.386 Sum_probs=180.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCCcCCCCCCCCC
Q 009455 56 REEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQATSANQVGQVKSSSSNIQSQAPTQAL 135 (534)
Q Consensus 56 Redlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~~~ps~~~~sasq~G~v~~stsn~q~~a~~q~y 135 (534)
||+||++||+||+||+|+++||.+||+||++||||++||++||+|.|...-. .+. + .+++.++ .+.++|
T Consensus 1 Redli~~AVkFL~~~kVr~aPli~kr~FLksKGLT~eEI~eAfk~~gi~~~d---~s~-~----~p~~~~~---~~~~p~ 69 (300)
T KOG2629|consen 1 REDLIENAVKFLQNPKVRDAPLIKKREFLKSKGLTEEEIQEAFKRDGIPAQD---VSK-Q----IPTANQV---VSGGPP 69 (300)
T ss_pred CcHHHHHHHHHhcCcccccchHHHHHHHHHhcCCCHHHHHHHHHhcCCcccc---ccc-c----CCCcccc---cCCCch
Confidence 8999999999999999999999999999999999999999999996543210 000 0 0100111 111111
Q ss_pred CCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHH
Q 009455 136 QPQPAGAAPTAVSPVSTTMMSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLA 215 (534)
Q Consensus 136 qp~~~~Pap~g~~p~~~~~~prrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~ 215 (534)
.+- .+|.+ ...+||||||+||++++|+.||+|.|+|+||+|+|+++.+. ++|.||. .|+
T Consensus 70 ~~~--------~~P~~---~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P~~l~~~~~-k~e~~k~---------~Ld 128 (300)
T KOG2629|consen 70 LLI--------IQPQQ---NVLRRWRDYFVMAVILAGIAYAAYRFVKSYVLPRFLGESKD-KLEADKR---------QLD 128 (300)
T ss_pred hhh--------cCCCc---cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCccch-hHHHHHH---------HHH
Confidence 111 11222 56799999999999999999999999999999999999988 8887764 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCccccccccccc
Q 009455 216 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSLVNQEDHRDS 295 (534)
Q Consensus 216 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~~~~~~~QEd~~~~ 295 (534)
++..++.|...+...+++++.++|..++.| +...|+.+ ..-+-.++..|++|+ ++
T Consensus 129 ~~~~~~~~~~~~l~~~va~v~q~~~~qq~E---ls~~L~~l----~~~~~~~s~~~~k~e------------------se 183 (300)
T KOG2629|consen 129 DQFDKAAKSLNALMDEVAQVSQLLATQQSE---LSRALASL----KNTLVQLSRNIEKLE------------------SE 183 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHhhhhHHHHH------------------HH
Confidence 666666788888888899988888877653 33334333 333336666666666 44
Q ss_pred ccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCchHHHHHHHHhhCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 009455 296 VTGVKQPYANGKADFDMQSVRSSSPPAPGEPSVAPHPKSYMEIMAMVQRGEKPPNIRDINDLPPNPNQQLPNPRLAPKAK 375 (534)
Q Consensus 296 ~~slKQl~~ng~~~~d~~s~r~s~~p~~~e~~~~~hp~sy~eim~m~qrg~~p~~i~di~d~ppnp~~~~~~~r~~~~~k 375 (534)
++.+|++..|++.--+ |...+ +.|+||..||.+|.| ++.+||++|+++++.+..+..|..+
T Consensus 184 i~~Ik~lvln~~~f~~---------p~~p~-~~p~ip~wqi~~~sp---------~~~~~~~~~~~ne~~s~~~~~p~ss 244 (300)
T KOG2629|consen 184 INTIKQLVLNMSNFAP---------PVAPS-SAPSIPSWQIQAESP---------HHSSNRMTSTDNEKASDFATPPNSS 244 (300)
T ss_pred HHHHHHHHhcccccCC---------CCCcc-cCCCCchhhhccccc---------hhhhccCCCCCCcccccCCCCCCCC
Confidence 5666777777644332 33322 889999999998654 7889999999999999999999999
Q ss_pred c
Q 009455 376 P 376 (534)
Q Consensus 376 p 376 (534)
|
T Consensus 245 p 245 (300)
T KOG2629|consen 245 P 245 (300)
T ss_pred C
Confidence 8
No 2
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=99.97 E-value=4.2e-33 Score=250.87 Aligned_cols=133 Identities=34% Similarity=0.519 Sum_probs=44.4
Q ss_pred chHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCcc--cccccccCCC-CCcCCCCC
Q 009455 55 MREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQATSA--NQVGQVKSSS-SNIQSQAP 131 (534)
Q Consensus 55 ~Redlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~~~ps~~~~sa--sq~G~v~~st-sn~q~~a~ 131 (534)
+||+||++||+||+||+|+++|+++||+||++||||++||++||+|++......++... .+.+...... ....+..+
T Consensus 1 ~Re~li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (136)
T PF04695_consen 1 MREDLIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPPATSSTPAASPASSSQPSSTPSSQPAPPPP 80 (136)
T ss_dssp -HHHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S-----------------------------
T ss_pred CHHHHHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCccccccccccccccCCCCCCCCCCCCCCCCC
Confidence 59999999999999999999999999999999999999999999999887631111110 0000000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccc
Q 009455 132 TQALQPQPAGAAPTAVSPVSTTMMSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRL 189 (534)
Q Consensus 132 ~q~yqp~~~~Pap~g~~p~~~~~~prrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~L 189 (534)
.....+.+ .+++.....+++ ..++++|||||+|++++||++||+|.|+|+||+|+|
T Consensus 81 ~~~~~~~~-~~~~~~~~~~pp-~~p~~~wr~~~~~a~~~~Gl~~~~y~~~k~~v~P~l 136 (136)
T PF04695_consen 81 PPPSPPPP-QPPPPPYPRPPP-LPPQRTWRDVFITAYAFGGLGYGLYGLSKKYVEPML 136 (136)
T ss_dssp ----------------------------------------------------------
T ss_pred CCCCCCCC-CCCCccccchhh-hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC
Confidence 00000000 000000011111 137889999999999999999999999999999987
No 3
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.42 Score=49.81 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=102.9
Q ss_pred cccchhHHH-HHHHHHHHHHhHHHH-HHHHHhhcccccc--cchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHH
Q 009455 155 MSRFHWYHA-VLAVGLLAASGAGTA-VFFKKSLIPRLKS--WIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAAS 230 (534)
Q Consensus 155 ~prrDWRDy-FIMAtv~gGvgYG~Y-~L~KrYIlP~Lkp--ptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~s 230 (534)
..-|||... .||||+.-|+ |-+| ..+-.||++-=++ .--+-.|+..-..+ .+-++. |.+|+++..+..+.+-+
T Consensus 81 ~rwrdy~vmAvi~aGi~y~~-y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~-~~~~~~-l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 81 RRWRDYFVMAVILAGIAYAA-YRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKA-AKSLNA-LMDEVAQVSQLLATQQS 157 (300)
T ss_pred hhHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 467999876 6777766665 5554 3445667766666 22221333211111 122333 89999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCccccc--cccccccc---cccccccc
Q 009455 231 DVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSLVNQ--EDHRDSVT---GVKQPYAN 305 (534)
Q Consensus 231 evakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~~~~~~~Q--Ed~~~~~~---slKQl~~n 305 (534)
+++.++-.|.+. |+.+.+.+++.+.||..++..+-++++.+.-+.-.+.-++ ..+..... +..-+=.+
T Consensus 158 Els~~L~~l~~~-------~~~~s~~~~k~esei~~Ik~lvln~~~f~~p~~p~~~p~ip~wqi~~~sp~~~~~~~~~~~ 230 (300)
T KOG2629|consen 158 ELSRALASLKNT-------LVQLSRNIEKLESEINTIKQLVLNMSNFAPPVAPSSAPSIPSWQIQAESPHHSSNRMTSTD 230 (300)
T ss_pred HHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHhcccccCCCCCcccCCCCchhhhccccchhhhccCCCCC
Confidence 999999888877 8899999999999999999999999977666655544444 22333222 22222234
Q ss_pred CCCCccccCCCCCCCCC
Q 009455 306 GKADFDMQSVRSSSPPA 322 (534)
Q Consensus 306 g~~~~d~~s~r~s~~p~ 322 (534)
...++||++.=.+||..
T Consensus 231 ne~~s~~~~~p~sspe~ 247 (300)
T KOG2629|consen 231 NEKASDFATPPNSSPET 247 (300)
T ss_pred CcccccCCCCCCCCCcc
Confidence 46677777666666633
No 4
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=94.50 E-value=0.068 Score=49.37 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009455 160 WYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQEL 239 (534)
Q Consensus 160 WRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeL 239 (534)
|.-+.+-|+++|++||| |.-+|=.=+|-|+==||+ -+..--..+ -++++. +.+.++.+++.....+..|+.-+.++
T Consensus 5 ~~~~i~paa~~gavGY~-Y~wwKGws~sD~M~vTrr-~m~~A~~~v-~kql~~-vs~~l~~tKkhLsqRId~vd~klDe~ 80 (126)
T PF07889_consen 5 WSSLIVPAAAIGAVGYG-YMWWKGWSFSDLMFVTRR-SMSDAVASV-SKQLEQ-VSESLSSTKKHLSQRIDRVDDKLDEQ 80 (126)
T ss_pred ccchhhHHHHHHHHHhe-eeeecCCchhHHHHHHHH-hHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455568889999997 333554445555554555 333221111 234444 78888888899999999999888888
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 009455 240 LNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSN 279 (534)
Q Consensus 240 l~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id 279 (534)
.+.....+..+.++-.-++.+..+++++...+..|++.|+
T Consensus 81 ~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 81 KEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777777888888888888888888887663
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=92.96 E-value=0.91 Score=43.41 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=22.4
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 155 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 155 ~prrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
.|..||--|......+..++..+|+|++||++|-|..
T Consensus 22 mp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~ 58 (181)
T PRK13454 22 MPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGA 58 (181)
T ss_pred CCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776432222223334555788999999986665
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=91.17 E-value=2.2 Score=40.79 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=13.4
Q ss_pred HHHHHHHhhcccccc
Q 009455 177 TAVFFKKSLIPRLKS 191 (534)
Q Consensus 177 ~Y~L~KrYIlP~Lkp 191 (534)
+|+|+++|++|.|..
T Consensus 23 Ly~ll~kf~~ppI~~ 37 (155)
T PRK06569 23 LYIFVYKFITPKAEE 37 (155)
T ss_pred HHHHHHHHhHHHHHH
Confidence 588999999998887
No 7
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=90.91 E-value=2.3 Score=41.83 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=16.5
Q ss_pred HHHHHHHhhcccccccchhhccccccchh
Q 009455 177 TAVFFKKSLIPRLKSWIRKVVLEEEDDSE 205 (534)
Q Consensus 177 ~Y~L~KrYIlP~Lkpptrs~~LE~Dke~~ 205 (534)
+|+|.+||++|.|.. +||+.++.|
T Consensus 66 L~~lL~k~~~~pI~~-----vLe~R~~~I 89 (204)
T PRK09174 66 FYLFMSRVILPRIGG-----IIETRRDRI 89 (204)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 478999999986655 666554433
No 8
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=88.56 E-value=4.3 Score=38.44 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 157 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 157 rrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
..||...|+.+..+.-+ |+|.++|++|-|..
T Consensus 15 ~~~~~t~~~~iInFliL----~~lL~~~l~~pi~~ 45 (173)
T PRK13453 15 GVEWGTVIVTVLTFIVL----LALLKKFAWGPLKD 45 (173)
T ss_pred CCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 46788887776655555 56677777765554
No 9
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=87.14 E-value=6.3 Score=36.64 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 160 WYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 160 WRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
|...|+.++.++- +|+|.++|++|-|..
T Consensus 8 ~~~~~~~~i~Fli----l~~ll~~~l~~pi~~ 35 (164)
T PRK14471 8 FGLFFWQTILFLI----LLLLLAKFAWKPILG 35 (164)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHhHHHHHH
Confidence 7555555444333 466788888776655
No 10
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=86.03 E-value=0.94 Score=44.09 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 009455 168 GLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAA---------SDVAKASQE 238 (534)
Q Consensus 168 tv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~---------sevakt~qe 238 (534)
.+++|+.||+.++|-|. .|+.+ -|| ..||..+.+=+.+..+.+.+.. .||+.|-..
T Consensus 49 Ia~~~~~Yg~lYlYERL------tWT~~-----AKE----R~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~r 113 (171)
T PF04799_consen 49 IAVSGSLYGGLYLYERL------TWTNK-----AKE----RAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFAR 113 (171)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHH------hcCch-----HHH----HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34677889998888874 68887 222 4566555555555555444333 223222222
Q ss_pred HH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009455 239 LL-------NSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 281 (534)
Q Consensus 239 Ll-------~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f 281 (534)
|- ..-++|-+.|.+-++.||+....+|.|++.-..|++.+++|
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22223333344445555555555666655555555444444
No 11
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=85.87 E-value=7.5 Score=36.68 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
.+|...|+.+..+.-+ |++.++|++|-|.. .+++.++
T Consensus 14 ~~~~~~~~~~i~Flil----~~iL~~~~~kpi~~-----~l~~R~~ 50 (173)
T PRK13460 14 VNPGLVVWTLVTFLVV----VLVLKKFAWDVILK-----ALDERAS 50 (173)
T ss_pred CcHhHHHHHHHHHHHH----HHHHHHHhHHHHHH-----HHHHHHH
Confidence 4776666654444444 45566666654444 5555544
No 12
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=84.39 E-value=41 Score=38.45 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 009455 159 HWYHAVLAVGLLAASGAGTAVFFK 182 (534)
Q Consensus 159 DWRDyFIMAtv~gGvgYG~Y~L~K 182 (534)
-+.=||++..+++|+|.|.|++-+
T Consensus 323 ~~~~~~~~l~~~~~~g~~~~~~~q 346 (656)
T PRK06975 323 SAALWFVVVVLACAAAVGGYALNR 346 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999996544
No 13
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=84.03 E-value=12 Score=34.68 Aligned_cols=30 Identities=7% Similarity=0.105 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
.||...|+.+..++-+ ++|.++|+++-|..
T Consensus 3 ~~~~~~~~~~inF~il----~~iL~~f~~kpi~~ 32 (159)
T PRK13461 3 INIPTIIATIINFIIL----LLILKHFFFDKIKA 32 (159)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHhHHHHHH
Confidence 5787666655544444 45566666654444
No 14
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=82.59 E-value=19 Score=39.02 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.2
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009455 156 SRFHWYHAVLAVGLLAASGAGTAVFFK 182 (534)
Q Consensus 156 prrDWRDyFIMAtv~gGvgYG~Y~L~K 182 (534)
.++-|.=++|+..++.|+|+|+|++.+
T Consensus 33 ~~~g~~l~~~aili~la~g~g~y~~~~ 59 (390)
T PRK10920 33 NRTGLVLSAVAIAIALAAGAGLYYHGK 59 (390)
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 467778888888888999999998854
No 15
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=82.58 E-value=13 Score=35.11 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
.+|...|+.+..++-+ |+|.++|++|-|.. .+++.++
T Consensus 16 ~~~~~~~~~~i~Flil----~~lL~~~l~kpi~~-----~l~~R~~ 52 (175)
T PRK14472 16 PNPGLIFWTAVTFVIV----LLILKKIAWGPILS-----ALEEREK 52 (175)
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHHhHHHHHH-----HHHHHHH
Confidence 4666666665544433 55677777665544 5554444
No 16
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=81.27 E-value=32 Score=29.05 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 216 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 216 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
+|..+..+.....+..+.+-+.++++.-++-..-....++.++...+.++.+..++++|.
T Consensus 29 ~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 29 DEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444334444433222222233444555555666666666666554
No 17
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=80.09 E-value=19 Score=33.57 Aligned_cols=30 Identities=3% Similarity=-0.072 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
.+|...|+.+..+.-+ ++|.++|+++-|..
T Consensus 6 ~~~~~~~~~~inflil----~~lL~~fl~kpi~~ 35 (164)
T PRK14473 6 INLGLLIAQLINFLLL----IFLLRTFLYRPVLN 35 (164)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5676555554444444 55666766655544
No 18
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=79.44 E-value=15 Score=36.61 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
.||.+.|+.+..+.-+ ++|.++|+++-|..
T Consensus 3 id~~t~~~qiInFlil----~~lL~kfl~kPi~~ 32 (246)
T TIGR03321 3 IDWFTVIAQLINFLIL----VWLLKRFLYRPILD 32 (246)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHhHHHHHH
Confidence 5787777765554444 55666666654444
No 19
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=79.25 E-value=16 Score=36.91 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
.||..+|+.+..+.-+ ++|.++|+++-|..
T Consensus 3 id~~t~~~qiInFlIL----v~lL~~fl~kPi~~ 32 (250)
T PRK14474 3 IDWFTVVAQIINFLIL----VYLLRRFLYKPIIQ 32 (250)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4787777776655555 45666666554443
No 20
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=78.60 E-value=18 Score=34.11 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=11.0
Q ss_pred HHHHHHHhhcccccc
Q 009455 177 TAVFFKKSLIPRLKS 191 (534)
Q Consensus 177 ~Y~L~KrYIlP~Lkp 191 (534)
+|+|+++|++|-|..
T Consensus 19 ll~ll~~~~~~pi~~ 33 (161)
T COG0711 19 LLWLLKKFVWKPILK 33 (161)
T ss_pred HHHHHHHHhHHHHHH
Confidence 467888888876665
No 21
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=78.52 E-value=3.4 Score=39.21 Aligned_cols=28 Identities=7% Similarity=-0.055 Sum_probs=25.0
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009455 155 MSRFHWYHAVLAVGLLAASGAGTAVFFK 182 (534)
Q Consensus 155 ~prrDWRDyFIMAtv~gGvgYG~Y~L~K 182 (534)
.|++-|..+-..|+++|.++||+|.+.+
T Consensus 28 ~pk~~~Sg~t~~aa~~gatayG~~~~~~ 55 (146)
T KOG3300|consen 28 IPKTGPSGMTMFAAVSGATAYGMYQVGQ 55 (146)
T ss_pred CCccCCCcchhhhHHHHHHHHHHHHHHh
Confidence 5788999999999999999999998864
No 22
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=77.70 E-value=40 Score=31.79 Aligned_cols=28 Identities=14% Similarity=-0.175 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSL 185 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYI 185 (534)
.+|..++..+.-+.-+.+.+|+|..++|
T Consensus 17 ~~~~~~~~~iinflIl~~lL~~fl~kpI 44 (174)
T PRK07352 17 LNLNLLETNLINLAIVIGLLYYFGRGFL 44 (174)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4565554444555555555566666554
No 23
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=77.68 E-value=22 Score=33.05 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009455 162 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 162 DyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
++|++.+.+. -+++|.++|+++-|.. .+++.++
T Consensus 24 t~~~~~inFl----iL~~lL~k~l~~Pi~~-----~l~~R~~ 56 (156)
T CHL00118 24 TLPLMALQFL----LLMVLLNIILYKPLLK-----VLDERKE 56 (156)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 4555544333 3577888998877655 4554444
No 24
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=76.83 E-value=5 Score=35.57 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHH
Q 009455 161 YHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAA 222 (534)
Q Consensus 161 RDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ 222 (534)
-|.|+.++++.=|+|-+|.+||||-+|-=.++-.+-.|+.+ ..-|+.++-..|..+.
T Consensus 4 ~Da~~~~V~V~IVclliya~YRR~~i~~p~~~r~~D~L~~~-----ds~F~D~lTpDQVrAl 60 (92)
T PHA02681 4 LDALLTVIVISIVCYIVIMMYRRSCVSAPAVPRNKDLLPPG-----ASSFEDKMTDDQVRAF 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCC-----CchhhccCCHHHHHHH
Confidence 48899999999999999999999966644433222123322 2456666555555544
No 25
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=76.23 E-value=28 Score=32.13 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=14.8
Q ss_pred HHHHHHHhhcccccccchhhccccccc
Q 009455 177 TAVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 177 ~Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
+|+|.++|++|-|.. .+|+.++
T Consensus 20 l~~~l~kfl~kPi~~-----~l~~R~~ 41 (141)
T PRK08476 20 LIVILNSWLYKPLLK-----FMDNRNA 41 (141)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHH
Confidence 577889988876655 5554444
No 26
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=74.74 E-value=34 Score=30.71 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
+|| .+|+|++.+. -+++|.++++++-|.. .+++.++
T Consensus 4 ~~~-t~~~~~i~fl----il~~ll~~~l~~pi~~-----~l~~R~~ 39 (140)
T PRK07353 4 FDA-TLPLMAVQFV----LLTFILNALFYKPVGK-----VVEERED 39 (140)
T ss_pred cch-hHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 454 3566654333 3466778887766554 5555444
No 27
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.61 E-value=16 Score=37.37 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=29.0
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009455 156 SRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 188 (534)
Q Consensus 156 prrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~ 188 (534)
.+-+|+.+++.+.++.-+.+++|++++.|..|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (346)
T PRK10476 6 KKSPRKKLPALAIVALAIVALVFVIWRTDSAPS 38 (346)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHheccCceEe
Confidence 456899999999999999999999999888875
No 28
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=72.13 E-value=38 Score=30.88 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=10.1
Q ss_pred HHHHHHHhhcccccc
Q 009455 177 TAVFFKKSLIPRLKS 191 (534)
Q Consensus 177 ~Y~L~KrYIlP~Lkp 191 (534)
+|+|.+++++|-|..
T Consensus 17 l~~il~~~~~~pi~~ 31 (156)
T PRK05759 17 LVWFIMKFVWPPIMK 31 (156)
T ss_pred HHHHHHHHhHHHHHH
Confidence 466777777766555
No 29
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.72 E-value=38 Score=37.92 Aligned_cols=55 Identities=11% Similarity=0.159 Sum_probs=28.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 214 LAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 214 i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
|.+-....+ .+.+.+++++.+.+.+|... +..+.+.++..+..|+.|..++..|+
T Consensus 62 FddkVnqSALteqQ~kasELEKqLaaLrqE-------lq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRE-------LDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 444444433 45555677777777777433 33344444444555555555555554
No 30
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=71.20 E-value=35 Score=32.11 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=14.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009455 165 LAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 165 IMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
+..+|...+.+++.+ +++|+++-|.. .||+.++
T Consensus 12 ~w~~i~f~il~~iL~-~~k~l~~pi~~-----~le~R~~ 44 (167)
T PRK14475 12 FWVGAGLLIFFGILI-ALKVLPKALAG-----ALDAYAA 44 (167)
T ss_pred HHHHHHHHHHHHHHH-HHHHhHHHHHH-----HHHHHHH
Confidence 333344444444322 24555444333 5555444
No 31
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=70.36 E-value=5.2 Score=31.20 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHh
Q 009455 157 RFHWYHAVLAVGLLAASGAGTAVFFKKS 184 (534)
Q Consensus 157 rrDWRDyFIMAtv~gGvgYG~Y~L~KrY 184 (534)
++++..||+.+.++.|++.|+|.++|.+
T Consensus 27 ~~~t~p~~~~~g~llG~~~g~~~~~~~~ 54 (55)
T PF09527_consen 27 WFGTSPWFTLIGLLLGIAAGFYNVYRLV 54 (55)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999999864
No 32
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=70.00 E-value=43 Score=32.07 Aligned_cols=34 Identities=3% Similarity=-0.068 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009455 162 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 162 DyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
|.|+...|...+ +++|+++|.+.-|.. .||+..+
T Consensus 5 ~~~fwq~I~FlI---ll~ll~kfawkPI~~-----~LeeR~~ 38 (154)
T PRK06568 5 DESFWLAVSFVI---FVYLIYRPAKKAILN-----SLDAKIL 38 (154)
T ss_pred HhHHHHHHHHHH---HHHHHHHHhHHHHHH-----HHHHHHH
Confidence 444544444444 344577777544443 5665544
No 33
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=68.96 E-value=17 Score=38.52 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=48.9
Q ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhcC
Q 009455 209 IAKPSLAEEAAAAAKAAAAAASDVAKASQ----ELLNSKNEERRYFSELMNLLDVQLQEMKSMSN--------SIRKLEG 276 (534)
Q Consensus 209 e~k~~i~eE~aea~ka~aaa~sevakt~q----eLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~--------si~~L~~ 276 (534)
..+.-|.+|+...+|.+-.+|.+|..-+. .||+.-++.|.--..+..++.+...|||-|+. .|..|+.
T Consensus 171 RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRa 250 (302)
T PF07139_consen 171 RYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRA 250 (302)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 34455677777777888888877764432 24444444444456666677777788887765 5666777
Q ss_pred CCCccCCCc
Q 009455 277 PSNNSGRTS 285 (534)
Q Consensus 277 ~id~f~~~~ 285 (534)
-|..|+.+.
T Consensus 251 dIK~fvs~r 259 (302)
T PF07139_consen 251 DIKHFVSER 259 (302)
T ss_pred HHHHHhhhh
Confidence 777776654
No 34
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=67.80 E-value=49 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=10.8
Q ss_pred HHHHHHhhcccccccchhhccccccchh
Q 009455 178 AVFFKKSLIPRLKSWIRKVVLEEEDDSE 205 (534)
Q Consensus 178 Y~L~KrYIlP~Lkpptrs~~LE~Dke~~ 205 (534)
|.|.++|++|-|.. .+++.++.+
T Consensus 13 ~~~l~~~~~~pi~~-----~l~~R~~~I 35 (132)
T PF00430_consen 13 FFLLNKFLYKPIKK-----FLDERKAKI 35 (132)
T ss_dssp HHHHHHHTHHHHHH-----HCS--S-HH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 45566666655444 555554433
No 35
>PRK11637 AmiB activator; Provisional
Probab=66.03 E-value=24 Score=37.67 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 009455 250 FSELMNLLDVQLQEMKSMSNSIRK 273 (534)
Q Consensus 250 L~~lt~~ld~q~~ElKSl~~si~~ 273 (534)
+..+-..|+.+.+.|+.+..++-.
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556665555544
No 36
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=65.50 E-value=90 Score=33.22 Aligned_cols=12 Identities=42% Similarity=0.426 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHH
Q 009455 169 LLAASGAGTAVF 180 (534)
Q Consensus 169 v~gGvgYG~Y~L 180 (534)
+++|+|+|+|++
T Consensus 39 l~~alg~~~~~~ 50 (372)
T PF04375_consen 39 LALALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHHHH
Confidence 337778887776
No 37
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=65.29 E-value=48 Score=35.99 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009455 215 AEEAAAAAKAAAAAASDVAKASQELLNS 242 (534)
Q Consensus 215 ~eE~aea~ka~aaa~sevakt~qeLl~s 242 (534)
.+|...+..+...+..+|...+.+|-..
T Consensus 177 ~dE~g~L~~~~n~M~~~L~~~~~~l~~~ 204 (569)
T PRK10600 177 RDEMAMLGTALNNMSAELAESYAVLEQR 204 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777776533
No 38
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.73 E-value=34 Score=35.65 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 214 LAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
.+.+..+.++.++..+.+|+.-+.+++...++.++ -.+....|||.+...|..|+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~-------~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK-------EIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888888888888876444443 34444555555555555555
No 39
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=62.91 E-value=89 Score=30.79 Aligned_cols=12 Identities=0% Similarity=-0.349 Sum_probs=5.3
Q ss_pred HHHHHHhhcccc
Q 009455 178 AVFFKKSLIPRL 189 (534)
Q Consensus 178 Y~L~KrYIlP~L 189 (534)
++|.++|+++-|
T Consensus 62 v~lL~k~l~kPi 73 (205)
T PRK06231 62 LLLGIFLFWKPT 73 (205)
T ss_pred HHHHHHHHHHHH
Confidence 334445544433
No 40
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=62.42 E-value=49 Score=36.12 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 164 VLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 164 FIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
||+-.+...+ +++|.++|++|-|..
T Consensus 4 ~i~qlInFlI---l~~lL~kfl~~Pi~~ 28 (445)
T PRK13428 4 FIGQLIGFAV---IVFLVWRFVVPPVRR 28 (445)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4444444444 466788888877665
No 41
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=61.70 E-value=54 Score=29.72 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=12.8
Q ss_pred HHHHHHHhhcccccccchhhccccccc
Q 009455 177 TAVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 177 ~Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
+++|.++|++|-|.. .+++.++
T Consensus 8 l~~il~~~~~~pi~~-----~l~~R~~ 29 (147)
T TIGR01144 8 LVWFCMKYVWPPLAK-----AIETRQK 29 (147)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHH
Confidence 455667777665554 5555544
No 42
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.04 E-value=1.1e+02 Score=27.21 Aligned_cols=21 Identities=10% Similarity=-0.197 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 009455 165 LAVGLLAASGAGTAVFFKKSL 185 (534)
Q Consensus 165 IMAtv~gGvgYG~Y~L~KrYI 185 (534)
|++++++++++..+.|.|+|+
T Consensus 12 i~a~~~~~~~~~~~~l~~~~a 32 (106)
T PF10805_consen 12 IWAVFGIAGGIFWLWLRRTYA 32 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 555555566666677777774
No 43
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=58.74 E-value=12 Score=29.46 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009455 246 ERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 281 (534)
Q Consensus 246 ekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f 281 (534)
||+.++++-++|=..+.|+|.-+.+|+++..+||.+
T Consensus 2 ek~~ieelkqll~rle~eirett~sl~ninksidq~ 37 (46)
T PF08181_consen 2 EKKKIEELKQLLWRLENEIRETTDSLRNINKSIDQY 37 (46)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456688889999999999999999999999888654
No 44
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=57.40 E-value=1.3e+02 Score=32.77 Aligned_cols=11 Identities=18% Similarity=0.011 Sum_probs=4.8
Q ss_pred HHHHHHhhccc
Q 009455 178 AVFFKKSLIPR 188 (534)
Q Consensus 178 Y~L~KrYIlP~ 188 (534)
|.+.|+.+-|+
T Consensus 210 ~~i~~~i~~pl 220 (553)
T PRK15048 210 YGIRRMLLTPL 220 (553)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 45
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.01 E-value=1.5e+02 Score=27.94 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhcccccccchhh-ccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHH
Q 009455 174 GAGTAVFFKKSLIPRLKSWIRKV-VLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKA 235 (534)
Q Consensus 174 gYG~Y~L~KrYIlP~Lkpptrs~-~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt 235 (534)
+.|+|.+.++--.+...+..... .++.+.. ..+..+ ..+.+|..++.+...+..+++.+.
T Consensus 54 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~l-~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 54 SLGLLCLLSKRPVQSVRPQQIEEPRLQGELS-ELQQQL-QQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHccccccchHHHHHhhhhhhhHH-hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766666632221 1111111 111122 224555555555555555555433
No 46
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=56.17 E-value=33 Score=38.35 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhccccc
Q 009455 164 VLAVGLLAASGAGTAVFFKKSLIPRLK 190 (534)
Q Consensus 164 FIMAtv~gGvgYG~Y~L~KrYIlP~Lk 190 (534)
+|+..|+.-++|++.+++||..+=.|-
T Consensus 2 iI~iivi~l~~~~~~~~~rk~~~k~i~ 28 (560)
T PF06160_consen 2 IIGIIVIVLIIYIIGYIYRKRYYKEID 28 (560)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777788888765543
No 47
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=55.70 E-value=5.3 Score=32.62 Aligned_cols=32 Identities=9% Similarity=-0.087 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhccccccc
Q 009455 159 HWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSW 192 (534)
Q Consensus 159 DWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpp 192 (534)
+=-++-...++.+|+||-+|..+| ++|.|+|+
T Consensus 11 ~t~e~~~~~va~~G~gY~iYR~vR--mlPSL~PP 42 (54)
T PF15654_consen 11 STAETAAKIVAGVGAGYLIYRGVR--MLPSLFPP 42 (54)
T ss_pred hHHHHhhhheeecchhhhhhhHHh--hcccccCc
Confidence 334566667778899999999987 68888884
No 48
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=54.91 E-value=17 Score=34.25 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=26.3
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccc
Q 009455 156 SRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRL 189 (534)
Q Consensus 156 prrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~L 189 (534)
+.-+|+-+|-.+.++.|++.+++.+.|.|+.|-+
T Consensus 70 ~~gewk~v~~~~~~~i~~s~~l~~~~r~~~~~~~ 103 (142)
T PF02936_consen 70 PTGEWKKVFGGVFIFIGFSVLLFIWQRSYVYPPL 103 (142)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3468999999999999999999999999998763
No 49
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=54.78 E-value=1.2e+02 Score=34.45 Aligned_cols=15 Identities=7% Similarity=-0.204 Sum_probs=9.6
Q ss_pred hHHHHHHHHHhhccc
Q 009455 174 GAGTAVFFKKSLIPR 188 (534)
Q Consensus 174 gYG~Y~L~KrYIlP~ 188 (534)
++.+|.++|+..-|+
T Consensus 192 ~~~~~~~~r~i~~pl 206 (919)
T PRK11107 192 LLFAFRLMRDVTGPI 206 (919)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455667777766665
No 50
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=52.20 E-value=67 Score=26.45 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009455 215 AEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPS 278 (534)
Q Consensus 215 ~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~i 278 (534)
..++....+..........+.++.+...+=. .|...+..+..++.+|..|...|..|...+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~---~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYR---DFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555544332 277788888888888888877777776544
No 51
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=51.78 E-value=41 Score=35.51 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009455 230 SDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIR 272 (534)
Q Consensus 230 sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~ 272 (534)
.++..++.++-.+ |....+.++.+.+++++|+.+|.
T Consensus 70 ~ql~~~~~k~~~s-------i~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 70 TQLRANIAKAEES-------IAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666 44444444455555555555443
No 52
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=51.24 E-value=2e+02 Score=26.70 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.1
Q ss_pred ccccccc
Q 009455 197 VLEEEDD 203 (534)
Q Consensus 197 ~LE~Dke 203 (534)
.++..++
T Consensus 30 ~l~~R~~ 36 (159)
T PRK09173 30 SLDARAD 36 (159)
T ss_pred HHHHHHH
Confidence 4444433
No 53
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.99 E-value=76 Score=34.06 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 009455 229 ASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGP 277 (534)
Q Consensus 229 ~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~ 277 (534)
++++.++.+.....-+|..+....-.+++++|.+.||+++.+|.+++.+
T Consensus 13 fq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 13 FQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4445555555555545555556777778888888888888888888754
No 54
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=50.90 E-value=11 Score=32.06 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=28.2
Q ss_pred HhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhC
Q 009455 65 KFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 101 (534)
Q Consensus 65 ~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra 101 (534)
..|.||..+..=++.-.+||+.-|||++|++..+.|-
T Consensus 11 ~~~~~~~~re~f~~dp~a~~~~~~Lt~eE~~al~~rD 47 (77)
T cd07321 11 QLLVKPEVKERFKADPEAVLAEYGLTPEEKAALLARD 47 (77)
T ss_pred HHhcCHHHHHHHHhCHHHHHHHcCCCHHHHHHHHcCC
Confidence 3455566666666666899999999999999888653
No 55
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=49.71 E-value=1.5e+02 Score=28.84 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHHHHHHHHh
Q 009455 165 LAVGLLAASGAGTAVFFKKS 184 (534)
Q Consensus 165 IMAtv~gGvgYG~Y~L~KrY 184 (534)
|.+.+++.||+|+.+++.++
T Consensus 4 i~~i~~~~vG~~~G~~~~~~ 23 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRKK 23 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455544444443
No 56
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=49.22 E-value=1.9e+02 Score=27.61 Aligned_cols=10 Identities=10% Similarity=-0.110 Sum_probs=5.5
Q ss_pred ccchhHHHHH
Q 009455 156 SRFHWYHAVL 165 (534)
Q Consensus 156 prrDWRDyFI 165 (534)
..++|.++|.
T Consensus 23 ~~~~~t~~~~ 32 (184)
T PRK13455 23 FSLSNTDFVV 32 (184)
T ss_pred CCCcchHHHH
Confidence 3356766643
No 57
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=48.50 E-value=34 Score=32.07 Aligned_cols=29 Identities=7% Similarity=-0.188 Sum_probs=25.4
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009455 155 MSRFHWYHAVLAVGLLAASGAGTAVFFKK 183 (534)
Q Consensus 155 ~prrDWRDyFIMAtv~gGvgYG~Y~L~Kr 183 (534)
.|++-|+.+.+++++++-.+||+|.+.+.
T Consensus 24 ~p~rg~sg~~~~~~~~~~~~~G~y~~~~~ 52 (130)
T PF06212_consen 24 LPKRGPSGWTMFAGGAGIMAYGFYKVGQG 52 (130)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999998873
No 58
>PRK09793 methyl-accepting protein IV; Provisional
Probab=48.05 E-value=1.8e+02 Score=31.82 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009455 251 SELMNLLDVQLQEMKSMSNSIRKLEGPS 278 (534)
Q Consensus 251 ~~lt~~ld~q~~ElKSl~~si~~L~~~i 278 (534)
.++....+.|...+..+..++..|...+
T Consensus 285 ~~ls~~~e~qa~~~~~~~~s~~~~~~~~ 312 (533)
T PRK09793 285 NDLSSRTEQQAASLAQTAASMEQLTATV 312 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554333
No 59
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.87 E-value=1.9e+02 Score=29.20 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSL 185 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYI 185 (534)
-.|+-++++.-++.++.+|++++.+.--
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 29 (334)
T TIGR00998 2 KYFLLLLVVLLIVVAGAYAIYWFLVLRD 29 (334)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3577777777777788888887655433
No 60
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.80 E-value=1.2e+02 Score=32.22 Aligned_cols=12 Identities=8% Similarity=-0.604 Sum_probs=6.8
Q ss_pred HHHHhHHHHHHH
Q 009455 170 LAASGAGTAVFF 181 (534)
Q Consensus 170 ~gGvgYG~Y~L~ 181 (534)
.+|..|++|.=+
T Consensus 32 ~AgA~Y~~yQ~~ 43 (301)
T PF06120_consen 32 GAGAWYYFYQNA 43 (301)
T ss_pred HHHHHHHHHHHH
Confidence 345567766544
No 61
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=47.68 E-value=18 Score=30.32 Aligned_cols=43 Identities=7% Similarity=-0.047 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc--cchhhcccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS--WIRKVVLEE 200 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp--ptrs~~LE~ 200 (534)
.|---|+--..-+..+...+|.+..|||+|+|.. ..|....+.
T Consensus 4 Ld~~~f~sQ~~Wl~i~f~~ly~l~s~~iLPri~~~l~~R~~~~~~ 48 (67)
T MTH00169 4 LDSVTYLTQYIWTLIILFFLFSLLVNYILPKIQQQLVIRTKGVNS 48 (67)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333334444555699999999999987 444433333
No 62
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=45.40 E-value=1.6e+02 Score=27.25 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009455 214 LAEEAAAAAKAAAAAASDVAKASQELLNS 242 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sevakt~qeLl~s 242 (534)
+.+|...++......+.+|.+.+.++...
T Consensus 80 vA~eir~LA~~t~~~~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 80 VADEIRKLAEQTSESAKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhhh
Confidence 56777777766666666666666555533
No 63
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=37 Score=38.28 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHh--HHHHHHHHHhhc
Q 009455 159 HWYHAVLAVGLLAASG--AGTAVFFKKSLI 186 (534)
Q Consensus 159 DWRDyFIMAtv~gGvg--YG~Y~L~KrYIl 186 (534)
.|-|-|+-+.|+.|+. |-+|.+.||+|+
T Consensus 367 ~l~d~~~p~avfya~v~P~~s~F~l~k~v~ 396 (546)
T KOG0718|consen 367 HLCDELLPSAVFYALVFPITSYFGLKKFVL 396 (546)
T ss_pred EeechhhhhhhhhhhhHHHHHHHHHHHHee
Confidence 6779999988888875 677888899875
No 64
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=44.21 E-value=1.5e+02 Score=31.47 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=14.3
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHH
Q 009455 156 SRFHWYHAVLAVGLLAASGAGTAV 179 (534)
Q Consensus 156 prrDWRDyFIMAtv~gGvgYG~Y~ 179 (534)
.+++|+-.++.+.+++|+++++|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~ 42 (390)
T PRK15136 19 KRKRALLLLTLLFIIIGVAYGIYW 42 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666655555
No 65
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=43.96 E-value=1.4e+02 Score=29.01 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009455 173 SGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAA--KAAAAAASDVAKASQELLNSKNEERRYF 250 (534)
Q Consensus 173 vgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~--ka~aaa~sevakt~qeLl~sk~eekk~L 250 (534)
|.-++..|-..||-.+|-.+.++.+++.-....+..-++..-.+-.-..+ ....-.+..+-+..+.|..+.-.+--+|
T Consensus 13 v~eal~~L~~~~lP~~~~~~~~~~~~~rl~~~m~~~~~~~~~~~a~~g~vd~~~L~~va~~~~~~lkrl~~s~~kg~~ll 92 (160)
T PF15005_consen 13 VVEALKSLRHDYLPSHLHVEGLQARAQRLLLEMEDFFFLPYAEDAFMGVVDEDTLDKVAWSFKNQLKRLTDSDLKGEPLL 92 (160)
T ss_pred HHHHHHHHHHHhCccccCcchHHHHHHHHHHHhhCccccccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCCcccchHH
Confidence 33456789999999998888888777765544433333332111111111 2233334455567788888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009455 251 SELMNLLDVQLQEMKSMSNSI 271 (534)
Q Consensus 251 ~~lt~~ld~q~~ElKSl~~si 271 (534)
.+|...|..|.++||.+..+.
T Consensus 93 ~EL~~~r~~~~~~lk~~lk~f 113 (160)
T PF15005_consen 93 KELVWMRQNQKKELKKALKQF 113 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999885443
No 66
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=43.91 E-value=1.7e+02 Score=27.76 Aligned_cols=21 Identities=0% Similarity=-0.138 Sum_probs=10.2
Q ss_pred HHHHHHhhcccccccchhhccccccc
Q 009455 178 AVFFKKSLIPRLKSWIRKVVLEEEDD 203 (534)
Q Consensus 178 Y~L~KrYIlP~Lkpptrs~~LE~Dke 203 (534)
+.|.++|++ .|+.+ .+++.++
T Consensus 36 ~~lL~~fl~----kPi~~-~l~~R~~ 56 (167)
T PRK08475 36 VGILWYFAA----KPLKN-FYKSRIN 56 (167)
T ss_pred HHHHHHHHH----HHHHH-HHHHHHH
Confidence 334455443 44555 5555544
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.04 E-value=1e+02 Score=34.59 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 249 YFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 249 ~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
.|.++-..|+..+..++.+...|..|.
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~ 132 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELL 132 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777776666
No 68
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=42.81 E-value=37 Score=24.81 Aligned_cols=24 Identities=0% Similarity=-0.305 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 009455 159 HWYHAVLAVGLLAASGAGTAVFFK 182 (534)
Q Consensus 159 DWRDyFIMAtv~gGvgYG~Y~L~K 182 (534)
.|.||+-.|..++=+.|-+|-|.|
T Consensus 2 ~~~~wls~a~a~~Lf~YLv~ALlR 25 (29)
T PRK14740 2 TVLDWLSLALATGLFVYLLVALLR 25 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 599999888888888898888876
No 69
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=39.75 E-value=2.6e+02 Score=31.84 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.8
Q ss_pred HHHHHHHHHhh
Q 009455 175 AGTAVFFKKSL 185 (534)
Q Consensus 175 YG~Y~L~KrYI 185 (534)
..++++++++|
T Consensus 311 ~~~~~~~~~~i 321 (921)
T PRK15347 311 SVLFLLLRRYL 321 (921)
T ss_pred HHHHHHHHHHH
Confidence 34455566655
No 70
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=39.08 E-value=3.4e+02 Score=30.04 Aligned_cols=13 Identities=23% Similarity=-0.151 Sum_probs=6.2
Q ss_pred HhHHHHHHHHHhh
Q 009455 173 SGAGTAVFFKKSL 185 (534)
Q Consensus 173 vgYG~Y~L~KrYI 185 (534)
++.++++++.|+|
T Consensus 206 ~~~~~~~~i~~~I 218 (554)
T PRK15041 206 VIFAVWFGIKASL 218 (554)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455455544
No 71
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=37.19 E-value=45 Score=31.26 Aligned_cols=29 Identities=7% Similarity=-0.060 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 009455 159 HWYHAVLAVGLLAASGAGTAVFFKKSLIP 187 (534)
Q Consensus 159 DWRDyFIMAtv~gGvgYG~Y~L~KrYIlP 187 (534)
+|+-+|-.+.++.|++.+++.+.|.|++|
T Consensus 73 ewk~v~~~~~~~i~~s~~~~~~~r~~~~~ 101 (136)
T cd00922 73 EWKTVFGGVLAFIGITGVIFGLQRAFVYG 101 (136)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999988888899999999999999943
No 72
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.73 E-value=3e+02 Score=25.26 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=21.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009455 235 ASQELLNSKNEERRYFSELMNLLDVQLQEMKSM 267 (534)
Q Consensus 235 t~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl 267 (534)
+-++|-.-+.+--..|.++.++|+.+.+..+.|
T Consensus 37 ~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l 69 (128)
T PF06295_consen 37 AKQELEQYKQEVNDHFAQTAELLDNLTQDYQKL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455556777777777777777777
No 73
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=36.29 E-value=3.4e+02 Score=26.33 Aligned_cols=32 Identities=3% Similarity=-0.111 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 160 WYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 160 WRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
|-+.|..+..++-+.|-++.++=.-|.-.|..
T Consensus 10 ~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~ 41 (155)
T PRK06569 10 YSQIFWLIVTFGLLYIFVYKFITPKAEEIFNN 41 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33445554444444555555555555555554
No 74
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=36.28 E-value=45 Score=33.04 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009455 217 EAAAAAKAAAAAASDVAKASQELLNSKNEER 247 (534)
Q Consensus 217 E~aea~ka~aaa~sevakt~qeLl~sk~eek 247 (534)
.+.+++...++....-++.-++-+...+|+|
T Consensus 84 a~eaAR~RmQEE~dakA~~~kEKq~q~EEEK 114 (190)
T PF06936_consen 84 AMEAARRRMQEELDAKAEEYKEKQKQEEEEK 114 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554444444444444443
No 75
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=35.57 E-value=2.4e+02 Score=30.51 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=26.2
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 009455 155 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIP 187 (534)
Q Consensus 155 ~prrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP 187 (534)
..++.|+-.+..+++++|+.||+|++.-.|-.|
T Consensus 10 ~~~k~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 42 (352)
T COG1566 10 AKRKRFKLPLTLLVVLAAVLYGGLIWLYYRNHP 42 (352)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 456788888888899999999998887666544
No 76
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.10 E-value=1.1e+02 Score=31.06 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 250 FSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 250 L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
|+.+.+-|=+ ..||-+|...|++..
T Consensus 89 ~~~llrQLPs-~tEmp~Ll~dv~q~G 113 (211)
T COG3167 89 FDILLRQLPS-DTEMPNLLADVNQAG 113 (211)
T ss_pred HHHHHHhCCc-ccchhHHHHHHHHhh
Confidence 4444443333 357888888887665
No 77
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=35.06 E-value=2.6e+02 Score=32.35 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcC-----cCHHHHHHHHHHHHHHHHHHHHHHH
Q 009455 162 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAK-----PSLAEEAAAAAKAAAAAASDVAKAS 236 (534)
Q Consensus 162 DyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k-----~~i~eE~aea~ka~aaa~sevakt~ 236 (534)
.+|+|..++.++.|-+|++-++.|.|+..=-+-. .-+...+|. .. .+|...+.++-..+..|+.+-=
T Consensus 153 ~~~~~~~~~~~~~~~i~~lr~~vv~Pl~~L~~~a-------~ri~~r~F~~~~~~t~-~~Elg~L~~~FNqMs~EL~~lY 224 (574)
T COG3850 153 QLAGMLLILLLVVFTIYWLRRRVVRPLNQLTSAA-------QRIGRRQFDQRPTDTG-RNELGLLGRAFNQMSGELKKLY 224 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccCCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999986542222 112234444 22 6777777777777777775444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 237 QELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 237 qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
..|= .. ..+.|+.|....+.|.-|=.+=+.|-
T Consensus 225 ~~LE-~r------V~eKT~~L~~~Nq~Ls~LYqssr~L~ 256 (574)
T COG3850 225 ADLE-QR------VEEKTRDLEQKNQRLSFLYQSSRRLH 256 (574)
T ss_pred HHHH-HH------HHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 4433 32 34557777777777776655544443
No 78
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=35.05 E-value=34 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccccccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSW 192 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkpp 192 (534)
|-||-..|.++++|.+|..+|-+ ||-|++.++
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi---~~~Pmm~~e 34 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPI---YFRPMMNPE 34 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhh---hcccccChH
Confidence 67999999999999998776654 688999883
No 79
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=34.66 E-value=4.1e+02 Score=25.68 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 009455 251 SELMNLLDVQLQEMKSMSNSIRKLEGPSNN 280 (534)
Q Consensus 251 ~~lt~~ld~q~~ElKSl~~si~~L~~~id~ 280 (534)
..+...|....-++..|...|..++..|++
T Consensus 152 ~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 152 DELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 455556666677788888888888766643
No 80
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=34.53 E-value=64 Score=27.56 Aligned_cols=23 Identities=4% Similarity=0.145 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 009455 253 LMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 253 lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
-..++..+...|..|...+..|.
T Consensus 34 k~sa~~~l~s~l~~l~~~~~~L~ 56 (99)
T PF02465_consen 34 KQSAYGSLNSKLSTLQSALSDLN 56 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444454444
No 81
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=33.85 E-value=36 Score=33.39 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 157 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 157 rrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
.-.|+-.|+.++++.|++.++.++.+.|++|-+-.
T Consensus 96 ~~ewKtv~g~~~~f~Gl~~~v~l~~~v~vy~~~P~ 130 (167)
T KOG4075|consen 96 SNEWKTVFGVAGFFLGLTISVILFGKVRVYGPLPK 130 (167)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHhheecCCCCc
Confidence 35799999999999999999999999998887654
No 82
>PRK06770 hypothetical protein; Provisional
Probab=33.26 E-value=2e+02 Score=28.76 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 009455 227 AAASDVAKASQELLNSKNE 245 (534)
Q Consensus 227 aa~sevakt~qeLl~sk~e 245 (534)
.+-.+|.++|+.|.++|..
T Consensus 67 ~tE~~ii~~MH~MtHQKV~ 85 (180)
T PRK06770 67 STEEEIITAMHKMTHQKVK 85 (180)
T ss_pred cCHHHHHHHHHHHHhhhhh
Confidence 3456777888888877653
No 83
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.05 E-value=3.8e+02 Score=26.16 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q 009455 163 AVLAVGLLAASGAGTAVFFKKSL 185 (534)
Q Consensus 163 yFIMAtv~gGvgYG~Y~L~KrYI 185 (534)
.+++++|.+|+||.+....-+..
T Consensus 6 ~i~~~~vG~~~G~~~~~~~~~~~ 28 (201)
T PF12072_consen 6 AIVALIVGIGIGYLVRKKINRKK 28 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777766655544
No 84
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.91 E-value=3.1e+02 Score=27.41 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=7.9
Q ss_pred hHHHHHHHHhh
Q 009455 334 SYMEIMAMVQR 344 (534)
Q Consensus 334 sy~eim~m~qr 344 (534)
-|--||++++.
T Consensus 150 k~r~vlea~~~ 160 (251)
T PF11932_consen 150 KFRRVLEAYQI 160 (251)
T ss_pred HHHHHHHHHHH
Confidence 47778877765
No 85
>PLN03196 MOC1-like protein; Provisional
Probab=32.69 E-value=51 Score=36.47 Aligned_cols=33 Identities=39% Similarity=0.601 Sum_probs=21.1
Q ss_pred CCCCCCcHHH----HHHHHHhcCCCHHHHHHHHhhCC
Q 009455 70 PKVRGSPVIY----RRSFLEKKGLTKEEIDEAFRRVP 102 (534)
Q Consensus 70 P~V~~sPl~k----Ki~FLesKGLT~eEI~~Al~ra~ 102 (534)
|.|-.+.+.+ +++||++.|++..+|-.++.+.+
T Consensus 113 P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P 149 (487)
T PLN03196 113 PLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYP 149 (487)
T ss_pred cHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5555555444 56777777777777777776664
No 86
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.16 E-value=7.2e+02 Score=27.38 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhcC
Q 009455 250 FSELMNLLDVQLQEMKSMSN-SIRKLEG 276 (534)
Q Consensus 250 L~~lt~~ld~q~~ElKSl~~-si~~L~~ 276 (534)
|+.-+..|+++-+-|++=.. ++..+++
T Consensus 258 LEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 258 LEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 44444444444444444333 3444444
No 87
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=32.16 E-value=29 Score=28.63 Aligned_cols=28 Identities=46% Similarity=0.744 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 009455 58 EQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 99 (534)
Q Consensus 58 dlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ 99 (534)
++++.|++|+.+- +.|-||.++|+.||+
T Consensus 38 ~i~~~A~k~~~ha--------------kRktlt~~DI~~Alk 65 (65)
T smart00803 38 EIVQEALKFMRHS--------------KRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHh--------------CCCeecHHHHHHHhC
Confidence 6888999999886 458899999999985
No 88
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=31.92 E-value=3.5e+02 Score=28.80 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009455 215 AEEAAAAAKAAAAAASDVAKASQELLNS 242 (534)
Q Consensus 215 ~eE~aea~ka~aaa~sevakt~qeLl~s 242 (534)
.+|.....++.......+...+.++...
T Consensus 205 ~dE~g~l~~~~~~m~~~l~~~~~~~~~~ 232 (565)
T PRK10935 205 PNELGLLAKAFNQMSSELHKLYRSLEAS 232 (565)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555555555554433
No 89
>PRK12705 hypothetical protein; Provisional
Probab=31.59 E-value=2.9e+02 Score=31.32 Aligned_cols=11 Identities=9% Similarity=0.313 Sum_probs=6.7
Q ss_pred HHHHHHhhccc
Q 009455 178 AVFFKKSLIPR 188 (534)
Q Consensus 178 Y~L~KrYIlP~ 188 (534)
|+|+|+|++=.
T Consensus 23 ~~~~~~~~~~~ 33 (508)
T PRK12705 23 VLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHH
Confidence 56667776543
No 90
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=30.94 E-value=45 Score=26.35 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009455 250 FSELMNLLDVQLQEMKSMSNSI 271 (534)
Q Consensus 250 L~~lt~~ld~q~~ElKSl~~si 271 (534)
|.++-..+..|++|+.-|.+.|
T Consensus 17 l~elk~~l~~Q~kE~~~LRntI 38 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRNTI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334344444555555554444
No 91
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=30.88 E-value=3.8e+02 Score=27.62 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=25.6
Q ss_pred HHHHHHHhHHHHHHHHHhhcccccccchhhccccc
Q 009455 167 VGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEE 201 (534)
Q Consensus 167 Atv~gGvgYG~Y~L~KrYIlP~Lkpptrs~~LE~D 201 (534)
+.+++-++||++..+.-|+.=+..||+....++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 46 (310)
T PRK10559 12 AITLVLVILAFIAIFRAWVFYTESPWTRDARFSAD 46 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEeE
Confidence 45566677777777777777688888888777765
No 92
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=30.39 E-value=19 Score=31.28 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=22.1
Q ss_pred CCCCCCcHHHHHHHHHhcCCCHHHHHHHHhh
Q 009455 70 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRR 100 (534)
Q Consensus 70 P~V~~sPl~kKi~FLesKGLT~eEI~~Al~r 100 (534)
|..+..=++.-.+|++.-|||++|++..+.+
T Consensus 17 p~~rerF~~DPea~~~~~gLt~eE~~aL~~~ 47 (81)
T cd07922 17 PGLIERFQDDPSAVFEEYGLTPAERAALREG 47 (81)
T ss_pred HHHHHHHHHCHHHHHHHcCCCHHHHHHHHcc
Confidence 3333333444468999999999999987754
No 93
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.14 E-value=4.2e+02 Score=29.95 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009455 250 FSELMNLLDVQLQEMKSMSN 269 (534)
Q Consensus 250 L~~lt~~ld~q~~ElKSl~~ 269 (534)
+..+.++.+....+|+.|.+
T Consensus 101 ~~~l~~~~~~L~~~F~~LA~ 120 (475)
T PRK10361 101 IRQMINSEQRLSEQFENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666655
No 94
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=28.01 E-value=56 Score=26.70 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=18.1
Q ss_pred cccchhHHHHHHHHHHHHHhH
Q 009455 155 MSRFHWYHAVLAVGLLAASGA 175 (534)
Q Consensus 155 ~prrDWRDyFIMAtv~gGvgY 175 (534)
.+.++||=+|+...+++|+.|
T Consensus 41 ~~~~~W~~~fl~Gl~~g~~l~ 61 (62)
T PF14241_consen 41 KPDRDWRLAFLAGLILGGFLA 61 (62)
T ss_pred CCCccHHHHHHHHHHHHHHHh
Confidence 356899999999999999865
No 95
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=27.59 E-value=4e+02 Score=22.96 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHH
Q 009455 216 EEAAAAAKAAAAAASDVAKASQELLNS--KNEERRYFSELMNLLDVQLQEM 264 (534)
Q Consensus 216 eE~aea~ka~aaa~sevakt~qeLl~s--k~eekk~L~~lt~~ld~q~~El 264 (534)
++..+..+...+....+.+.+.++... ..+++..|.++...++.-.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 125 (181)
T PF12729_consen 75 EERQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLR 125 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556665555555432 3455656665555544443333
No 96
>PRK11677 hypothetical protein; Provisional
Probab=27.40 E-value=3.1e+02 Score=25.94 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009455 249 YFSELMNLLDVQLQEMKSM 267 (534)
Q Consensus 249 ~L~~lt~~ld~q~~ElKSl 267 (534)
-|.++..+|+.+.+.-+.|
T Consensus 55 HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 55 HFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666
No 97
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=27.30 E-value=2.6e+02 Score=22.16 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009455 249 YFSELMNLLDVQLQEMKSMSNSIRKLEGPS 278 (534)
Q Consensus 249 ~L~~lt~~ld~q~~ElKSl~~si~~L~~~i 278 (534)
.|..|+++|..++++||....+++.|+++|
T Consensus 9 ql~~l~~~l~elk~~l~~Q~kE~~~LRntI 38 (45)
T PF11598_consen 9 QLSELNQMLQELKELLRQQIKETRFLRNTI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888888665
No 98
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.16 E-value=6.5e+02 Score=25.26 Aligned_cols=25 Identities=16% Similarity=-0.052 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHHHHhhcccccccchh
Q 009455 168 GLLAASGAGTAVFFKKSLIPRLKSWIRK 195 (534)
Q Consensus 168 tv~gGvgYG~Y~L~KrYIlP~Lkpptrs 195 (534)
.++..++.+++..-.+| .++.+.+.
T Consensus 17 ~~~~~~~l~l~~~~~~~---~~~~~~~~ 41 (276)
T PRK13922 17 ILLLLLALALLLADRRL---GSLSPVRQ 41 (276)
T ss_pred HHHHHHHHHHHhhhccc---ccchHHHH
Confidence 34444455555555555 34444444
No 99
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=26.73 E-value=4.2e+02 Score=22.92 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009455 222 AKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIR 272 (534)
Q Consensus 222 ~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~ 272 (534)
....+..+.-+.+++++|++.++.-...|..+-.-+..=.+-++.|+.-|.
T Consensus 17 l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd 67 (88)
T PF10241_consen 17 LALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLD 67 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567777889999988887777776666555555555555554443
No 100
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=26.41 E-value=1.5e+02 Score=27.61 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=2.7
Q ss_pred HHHhHHHHHHHHHhhcccccccchh
Q 009455 171 AASGAGTAVFFKKSLIPRLKSWIRK 195 (534)
Q Consensus 171 gGvgYG~Y~L~KrYIlP~Lkpptrs 195 (534)
++...|++.++.+|+-|.+..|--.
T Consensus 20 ~~~f~~f~~~~~k~~g~~i~~~ld~ 44 (163)
T PF05405_consen 20 ALCFIIFIIFIYKKFGPSIAEWLDE 44 (163)
T ss_dssp --------------------CHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444556667777777775544
No 101
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=26.18 E-value=61 Score=32.76 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=23.0
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009455 76 PVIYRRSFLEKKGLTKEEIDEAFRRVP 102 (534)
Q Consensus 76 Pl~kKi~FLesKGLT~eEI~~Al~ra~ 102 (534)
.+..|++||++-|++++||-..+.+.+
T Consensus 242 ~l~~~i~~L~~lG~s~~ei~~mv~~~P 268 (345)
T PF02536_consen 242 KLKPKIEFLQSLGFSEEEIAKMVRRFP 268 (345)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHSG
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHhCc
Confidence 488999999999999999999999884
No 102
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=25.86 E-value=5.6e+02 Score=24.08 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009455 223 KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDV 259 (534)
Q Consensus 223 ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~ 259 (534)
++++...++|+.-+..++..-.+-+|.++.++..|.+
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k 88 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK 88 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444444433444445555554444
No 103
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=25.74 E-value=61 Score=32.78 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009455 75 SPVIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (534)
Q Consensus 75 sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 103 (534)
.-+..+++||++-|++.++|-.+|.+.+.
T Consensus 173 ~~~~~~v~~L~~~G~~~~~i~~~l~~~P~ 201 (345)
T PF02536_consen 173 SELKPKVEFLRSLGFSKEDIGKLLRKCPR 201 (345)
T ss_dssp CCCHHHHHHHHHCTT-GHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcccchhhhHHhhcccc
Confidence 34789999999999999999999999864
No 104
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=25.49 E-value=1.1e+02 Score=31.20 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCcc
Q 009455 218 AAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSL 286 (534)
Q Consensus 218 ~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~~~~~ 286 (534)
+.+.....+.-+.-++....+|+..-+. +..++++|..+.++|..|..++..+-+..+.|...++
T Consensus 54 l~~~l~~l~~v~~~~a~aapdL~~~l~~----~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~~n~ 118 (267)
T PF11887_consen 54 LREDLRNLADVADTYADAAPDLLDALDN----LTTTSRTLVDQRQQLDALLLSATGLADTGTDFLADNR 118 (267)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334444444444444444444444222 7788889999999999999999999888877766554
No 105
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=25.02 E-value=71 Score=35.34 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHH
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVF 180 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L 180 (534)
+.+|.+|+..++++|+|||...+
T Consensus 2 ~~~~k~l~~~~l~~~~~ygG~v~ 24 (582)
T PF09731_consen 2 SSFRKFLLYTTLLGGVGYGGGVY 24 (582)
T ss_pred CchhhHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888876544
No 106
>PLN03196 MOC1-like protein; Provisional
Probab=24.71 E-value=97 Score=34.38 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009455 75 SPVIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (534)
Q Consensus 75 sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 103 (534)
..+.+|++||++-|++.+||-.++.+.+.
T Consensus 338 ~kl~~kvefL~~~Gls~edI~~mv~k~P~ 366 (487)
T PLN03196 338 NVALKHVEFLRGRGFSAQDVAKMVVRCPQ 366 (487)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCCc
Confidence 34678999999999999999999999854
No 107
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=24.68 E-value=1e+02 Score=28.85 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=28.0
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 009455 155 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLI 186 (534)
Q Consensus 155 ~prrDWRDyFIMAtv~gGvgYG~Y~L~KrYIl 186 (534)
..+-+|.+.++.+.++|-++||.|-|+--.++
T Consensus 68 l~~~s~~~a~~~GallGl~~YgtYdlTN~Atl 99 (128)
T PF09945_consen 68 LAAGSWLRALLYGALLGLFAYGTYDLTNLATL 99 (128)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45569999999999999999999999987764
No 108
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=24.68 E-value=58 Score=20.74 Aligned_cols=23 Identities=22% Similarity=0.493 Sum_probs=16.1
Q ss_pred CCCCCCCCc---HHHHHHHHHhcCCC
Q 009455 68 SHPKVRGSP---VIYRRSFLEKKGLT 90 (534)
Q Consensus 68 ~dP~V~~sP---l~kKi~FLesKGLT 90 (534)
..|.|-... +..|+.||++.|++
T Consensus 6 ~~P~il~~~~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 6 KFPQILGYSEKKLKPKVEFLKELGFS 31 (31)
T ss_pred hCcCcccccHHHhhHHHHHHHHcCCC
Confidence 345554444 67799999999875
No 109
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=24.04 E-value=3.5e+02 Score=27.57 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009455 213 SLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMN 255 (534)
Q Consensus 213 ~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~ 255 (534)
.+.+|+.++..+-+.+..++..-|+.|+..-.+--.+|.+|+.
T Consensus 162 ~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~ 204 (244)
T cd07595 162 ALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIE 204 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678888888888888888888899988664555455555554
No 110
>PHA00426 type II holin
Probab=24.00 E-value=1.2e+02 Score=26.02 Aligned_cols=28 Identities=4% Similarity=-0.120 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSL 185 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYI 185 (534)
-+|.+||..|++.--|.--...++++++
T Consensus 32 lsl~~WfyvAai~YTVvQig~~v~~ki~ 59 (67)
T PHA00426 32 LSLNEWFYVAAIAYTVVQIGAKVVDTII 59 (67)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999988876555444445555554
No 111
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=23.78 E-value=3.1e+02 Score=27.52 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=36.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHH
Q 009455 212 PSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRY-FSELMNLLDVQLQE 263 (534)
Q Consensus 212 ~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~-L~~lt~~ld~q~~E 263 (534)
..+-.|+.|.+....+...|| +.|..++ .|+=+|.+ |+++|+...+.-+|
T Consensus 50 ~eLkNeLREVREELkEKmeEI-KQIKdiM-DKDFDKL~EFVEIMKeMQkDMDE 100 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEI-KQIKDIM-DKDFDKLHEFVEIMKEMQKDMDE 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhhHHHHHHHHHHHHHHHHhHHH
Confidence 336678888888888888898 8888888 55655543 78888877666555
No 112
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=23.65 E-value=6e+02 Score=23.82 Aligned_cols=16 Identities=6% Similarity=0.069 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 009455 250 FSELMNLLDVQLQEMK 265 (534)
Q Consensus 250 L~~lt~~ld~q~~ElK 265 (534)
+..+.+.++.+...++
T Consensus 76 ~~~~~~~i~~i~~~~~ 91 (262)
T smart00283 76 VEEAVSAVEELEESSD 91 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.34 E-value=3e+02 Score=27.51 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=20.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 236 SQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 236 ~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
++.|....+--+.|...+.+.++++.++|.+|...|..+.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334455555566666666666666555444
No 114
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=23.23 E-value=4.6e+02 Score=29.03 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 009455 214 LAEEAAAAAKAAAAAASDVAKASQELLNSKNEE 246 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sevakt~qeLl~sk~ee 246 (534)
.++|..+++...+.++.+|...+.+....-++.
T Consensus 399 VA~EVR~LA~~s~~at~~I~~~i~~~~~~v~~~ 431 (554)
T PRK15041 399 VAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVG 431 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777778777776655443333
No 115
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=23.19 E-value=9.9e+02 Score=27.47 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 009455 256 LLDVQLQEMKSMSNSI 271 (534)
Q Consensus 256 ~ld~q~~ElKSl~~si 271 (534)
.+..+.+|||.=.+.|
T Consensus 447 ~l~~isHelrtPL~~i 462 (914)
T PRK11466 447 FLAAMSHEIRTPLYGI 462 (914)
T ss_pred HHHHhHHHHhhHHHHH
Confidence 3444566666544444
No 116
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=23.13 E-value=6.1e+02 Score=27.76 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009455 219 AAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSN 269 (534)
Q Consensus 219 aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~ 269 (534)
.+.++.++.|+=++.-...--+.+--.+|.-+.+++++||--+++.|-|+.
T Consensus 283 ~~~l~~iE~AVid~E~~~~n~~T~llrdk~s~~~f~k~LD~EEekaRkls~ 333 (358)
T PF08405_consen 283 PATLRNIEDAVIDMEALSNNHLTALLRDKNSGAAFMKTLDMEEEKARKLST 333 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHhhhHHHHHHHHhh
Confidence 445566666665543221111222233444578889999988888887754
No 117
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.97 E-value=1.8e+02 Score=32.75 Aligned_cols=54 Identities=9% Similarity=0.109 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 215 AEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 215 ~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
.+|+.+..+....++.++.+.+++|... +.++-+-|+.++.|++.|+..|..+.
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq-------~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQ-------RGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555566666663333333322 33456667778888888888884443
No 118
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=22.50 E-value=94 Score=23.06 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 009455 57 EEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 99 (534)
Q Consensus 57 edlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ 99 (534)
.+||.-++.....= .-=+..=...+...|+|++||.++++
T Consensus 8 reli~l~~s~~~~C---~yc~~~H~~~a~~~G~~~~ei~~v~~ 47 (50)
T TIGR00778 8 KELIAIAVSQINGC---GYCLDAHTKLARKAGVTAEELAEALA 47 (50)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46777777766541 11133345567889999999999885
No 119
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.38 E-value=2.5e+02 Score=26.34 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=45.1
Q ss_pred HhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009455 183 KSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQ 262 (534)
Q Consensus 183 rYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ 262 (534)
=|.+=+++.|+=+ | -..-.+-. +.++.+.-.+.|.+....|-.+|.+-...|..+-..||.+..
T Consensus 19 GY~Y~wwKGws~s-------D--~M~vTrr~-------m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~e 82 (126)
T PF07889_consen 19 GYGYMWWKGWSFS-------D--LMFVTRRS-------MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKE 82 (126)
T ss_pred HheeeeecCCchh-------H--HHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6777778888776 2 01111111 112333333333333344444444433446677777777777
Q ss_pred HHHHHHHHHhhhcCCCCccC
Q 009455 263 EMKSMSNSIRKLEGPSNNSG 282 (534)
Q Consensus 263 ElKSl~~si~~L~~~id~f~ 282 (534)
--+.+.+.+..++.-+..|.
T Consensus 83 i~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 77777777777776654443
No 120
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.37 E-value=2.8e+02 Score=24.20 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 251 SELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 251 ~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
..+.+.++...++|+.++..|..|+
T Consensus 80 ~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 80 KRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555543
No 121
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=22.34 E-value=29 Score=29.17 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHhHHHH
Q 009455 155 MSRFHWYHAVLAVGLLAASGAGTA 178 (534)
Q Consensus 155 ~prrDWRDyFIMAtv~gGvgYG~Y 178 (534)
+...||-..+-.++++||+||-+|
T Consensus 31 Ls~kdWl~Lvp~~~~va~igYlay 54 (64)
T PF10660_consen 31 LSVKDWLALVPFAAAVAGIGYLAY 54 (64)
T ss_dssp ------------------------
T ss_pred ccHHHHHHHHhHHHHHHHHHHHhh
Confidence 455677777777788888887655
No 122
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=22.17 E-value=3.5e+02 Score=22.36 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009455 234 KASQELLNSKNEERRYFSELMNLLDVQLQEMKS 266 (534)
Q Consensus 234 kt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKS 266 (534)
..+.+++.+..-+...+..+.+.+.....+|..
T Consensus 73 ~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~ 105 (125)
T PF13801_consen 73 QELRALLAAPPPDEAAIEALLEEIREAQAELRQ 105 (125)
T ss_dssp HHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334445544443344455555555444444443
No 123
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=21.82 E-value=1.1e+02 Score=26.77 Aligned_cols=27 Identities=19% Similarity=-0.026 Sum_probs=20.7
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009455 156 SRFHWYHAVLAVGLLAASGAGTAVFFK 182 (534)
Q Consensus 156 prrDWRDyFIMAtv~gGvgYG~Y~L~K 182 (534)
.-++|.||.+.++++++....+|..-|
T Consensus 18 ~~~R~sDy~~~a~~ta~~p~~~~~~~~ 44 (86)
T PF10785_consen 18 RYFRPSDYAIWAGATAASPPLGYYMER 44 (86)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346899999999998888766665544
No 124
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.82 E-value=5.3e+02 Score=28.16 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009455 214 LAEEAAAAAKAAAAAASDVAKASQELLN 241 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sevakt~qeLl~ 241 (534)
.++|..+++.....++.+|...+.+...
T Consensus 397 VA~EVr~LA~~t~~st~~I~~~i~~~~~ 424 (553)
T PRK15048 397 VAGEVRNLASRSAQAAKEIKALIEDSVS 424 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777776665443
No 125
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=21.58 E-value=5.1e+02 Score=24.63 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhcc-------cccccchh
Q 009455 159 HWYHAVLAVGLLAASGAGTAVFFKKSLIP-------RLKSWIRK 195 (534)
Q Consensus 159 DWRDyFIMAtv~gGvgYG~Y~L~KrYIlP-------~Lkpptrs 195 (534)
.|+-|.=|.++.||+..|-|.|+ +|+.| .|-|..+.
T Consensus 4 ~w~~W~K~~~~G~~ii~~G~~l~-~y~tPTeEeL~~r~sPELrk 46 (128)
T PF07960_consen 4 NWRRWAKMLVAGAVIIGGGPALV-KYTTPTEEELFKRYSPELRK 46 (128)
T ss_pred hHHHHHHHHHhcceeEeechHHh-eecCCCHHHHHHhcCHHHHH
Confidence 35555444444444433333333 35554 34555555
No 126
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.54 E-value=1.1e+02 Score=29.08 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=24.8
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009455 156 SRFHWYHAVLAVGLLAASGAGTAVFFKK 183 (534)
Q Consensus 156 prrDWRDyFIMAtv~gGvgYG~Y~L~Kr 183 (534)
..|..-+|+-.++++||+|.++|-+.+|
T Consensus 31 nERTfl~wl~~~vllg~l~~~l~n~~~~ 58 (126)
T COG5264 31 NERTFLSWLSVTVLLGGLGFALYNSGDR 58 (126)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5788889999999999999999998884
No 127
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.45 E-value=2.5e+02 Score=29.70 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccC
Q 009455 216 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSG 282 (534)
Q Consensus 216 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~ 282 (534)
+|+..++.+.+....+|..-.++ +....+++..|..-++....+..|+.+...+..+..+....|+
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~-l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKK-LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555555555555555333333 2333444444444444445555555555444444443333333
No 128
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=21.45 E-value=43 Score=29.68 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=9.7
Q ss_pred HHHHHHhHHHHHHHH
Q 009455 168 GLLAASGAGTAVFFK 182 (534)
Q Consensus 168 tv~gGvgYG~Y~L~K 182 (534)
..+||+|||++.|+.
T Consensus 14 lG~GGvG~~L~~Lvt 28 (84)
T PF15141_consen 14 LGFGGVGYALFVLVT 28 (84)
T ss_pred HHccchhheeeeEeC
Confidence 334577888877653
No 129
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=21.41 E-value=5.4e+02 Score=26.18 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 232 VAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 232 vakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
+.+-+......+++..+.-.++++.|++..+++++|...+.+++
T Consensus 100 l~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 100 LGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555666666667888999998889999999888877
No 130
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=1.1e+02 Score=28.36 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=24.6
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009455 156 SRFHWYHAVLAVGLLAASGAGTAVFFKK 183 (534)
Q Consensus 156 prrDWRDyFIMAtv~gGvgYG~Y~L~Kr 183 (534)
..|..-+|+-.++++||+|.++|-+.+|
T Consensus 16 NERTFl~WL~~tvlLg~l~~~l~n~~~~ 43 (112)
T KOG4580|consen 16 NERTFLSWLSVTVLLGGLGFALYNSGDR 43 (112)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5688889999999999999999998884
No 131
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.32 E-value=1.1e+02 Score=26.00 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccc
Q 009455 164 VLAVGLLAASGAGTAVFFKKSLIPRL 189 (534)
Q Consensus 164 FIMAtv~gGvgYG~Y~L~KrYIlP~L 189 (534)
+|..++++|+.-|+| ++|+|+.=.|
T Consensus 2 ~iilali~G~~~Gff-~ar~~~~k~l 26 (64)
T PF03672_consen 2 LIILALIVGAVIGFF-IARKYMEKQL 26 (64)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 355566666654544 5777765444
No 132
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.30 E-value=1.2e+02 Score=27.86 Aligned_cols=28 Identities=11% Similarity=-0.286 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 009455 159 HWYHAVLAVGLLAASGAGTAVFFKKSLI 186 (534)
Q Consensus 159 DWRDyFIMAtv~gGvgYG~Y~L~KrYIl 186 (534)
.|.=|++.+.+++++++++|.+.|+|--
T Consensus 20 a~GWwll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 20 APGWWLLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556788888899999999999998865
No 133
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.18 E-value=4.7e+02 Score=28.35 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=14.5
Q ss_pred cchhHHHH-HHHHHHHHHhHHHHHHHHHhhc
Q 009455 157 RFHWYHAV-LAVGLLAASGAGTAVFFKKSLI 186 (534)
Q Consensus 157 rrDWRDyF-IMAtv~gGvgYG~Y~L~KrYIl 186 (534)
.+|||-.+ -|-....++ -..+--+|.|+-
T Consensus 215 ~kDWR~hleqm~~~~~~I-~~~~~~~~~~L~ 244 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSI-ESALPETKSQLD 244 (359)
T ss_pred cchHHHHHHHHHHHHHHH-HHhhhHHHHHHH
Confidence 38999554 343434443 233444555543
No 134
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=20.98 E-value=4.4e+02 Score=27.82 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhcCCC
Q 009455 216 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELM------NLLDVQLQEMKSMSNSIRKLEGPS 278 (534)
Q Consensus 216 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt------~~ld~q~~ElKSl~~si~~L~~~i 278 (534)
......++.+..++.++.+.++.+.+. ++... ..+..+.+||+.|..+|.++-++.
T Consensus 67 ~~g~s~lqtae~aL~~~~~~lqrirel-------avqaan~t~s~~dr~~iq~Ei~~l~~el~~iantt 128 (360)
T COG1344 67 QDGISKLQTAEGALSEISKILQRIKEL-------AVQAANGTLSDADRAAIQKEIEQLLDELDNIANTT 128 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455567777777777776666533 33333 367888999999999999988766
No 135
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=20.88 E-value=1.5e+02 Score=24.05 Aligned_cols=7 Identities=0% Similarity=-0.325 Sum_probs=4.8
Q ss_pred cchhHHH
Q 009455 157 RFHWYHA 163 (534)
Q Consensus 157 rrDWRDy 163 (534)
.++|-|.
T Consensus 6 ~~r~~D~ 12 (59)
T PF14880_consen 6 GRRLADI 12 (59)
T ss_pred hHHHHHH
Confidence 4677777
No 136
>PRK11637 AmiB activator; Provisional
Probab=20.86 E-value=3.6e+02 Score=28.96 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009455 230 SDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPS 278 (534)
Q Consensus 230 sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~i 278 (534)
.++...-.+|...+.+-.+.+..|-+.+.....+++.|......|+..|
T Consensus 201 ~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I 249 (428)
T PRK11637 201 YEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSI 249 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444344444454444444445554444444444333
No 137
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.79 E-value=7.6e+02 Score=23.73 Aligned_cols=11 Identities=27% Similarity=0.132 Sum_probs=4.5
Q ss_pred HHHHHHHHHhH
Q 009455 165 LAVGLLAASGA 175 (534)
Q Consensus 165 IMAtv~gGvgY 175 (534)
+.+.++|+++|
T Consensus 34 ~l~~l~~~~~~ 44 (199)
T PF10112_consen 34 LLSLLIGAVAF 44 (199)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 138
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=20.75 E-value=1.5e+02 Score=26.84 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=30.2
Q ss_pred cccchhHHH---HHHHHHHHHHhHHHHHHHHHhhcccccccchh
Q 009455 155 MSRFHWYHA---VLAVGLLAASGAGTAVFFKKSLIPRLKSWIRK 195 (534)
Q Consensus 155 ~prrDWRDy---FIMAtv~gGvgYG~Y~L~KrYIlP~Lkpptrs 195 (534)
.+...|... +|..-|..|+.|-+|.++=|=++=.||.-.++
T Consensus 29 ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlIlv~KAkrqr 72 (91)
T PF01708_consen 29 SSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLILVLKAKRQR 72 (91)
T ss_pred CCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHhheeeeccCC
Confidence 456788876 55555667888999999888888777775444
No 139
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.64 E-value=1.3e+02 Score=34.56 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCC
Q 009455 213 SLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGR 283 (534)
Q Consensus 213 ~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~~ 283 (534)
+|.+|+....|++.+.+..-+.+..+|-.+++ ..-+|+.+..||-..--|.+||++|.+...
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n---------~sqkeK~e~DLKkEIKKLQRlRdQIKtW~s 66 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSANN---------VSQKEKLESDLKKEIKKLQRLRDQIKTWQS 66 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57888999999999999888888888887743 344566666666666667777777766544
No 140
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.59 E-value=1.2e+02 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009455 159 HWYHAVLAVGLLAASGAGTAVFFKKSL 185 (534)
Q Consensus 159 DWRDyFIMAtv~gGvgYG~Y~L~KrYI 185 (534)
.|.=+.+.++++..+|.|+|.++||-.
T Consensus 118 ~~~i~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444334456777888899999999853
No 141
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=20.52 E-value=4.8e+02 Score=26.50 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=45.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCccCC
Q 009455 214 LAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEG-PSNNSGR 283 (534)
Q Consensus 214 i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~-~id~f~~ 283 (534)
..+++|+.+ +|...++.+-.+ .++.+..++++-..|.+-...|-..+..++-|..-|.+|-+ ..++|..
T Consensus 108 YWk~lAE~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~~e~ 178 (200)
T PF07412_consen 108 YWKELAEERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDNLES 178 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccC
Confidence 557888877 888899988855 55566677888777776666666667777777777777775 3444433
No 142
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=20.42 E-value=1.3e+02 Score=26.48 Aligned_cols=25 Identities=4% Similarity=-0.061 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhc
Q 009455 162 HAVLAVGLLAASGAGTAVFFKKSLI 186 (534)
Q Consensus 162 DyFIMAtv~gGvgYG~Y~L~KrYIl 186 (534)
..|+.+.+.++++|++|.|+.+-..
T Consensus 6 ~~l~Ga~~ag~la~~ly~lt~~i~~ 30 (82)
T PF11282_consen 6 RCLSGALIAGGLAYGLYFLTTSIAA 30 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888889999999986544
No 143
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=20.26 E-value=1.3e+02 Score=27.13 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcc
Q 009455 163 AVLAVGLLAASGAGTAVFFKKSLIP 187 (534)
Q Consensus 163 yFIMAtv~gGvgYG~Y~L~KrYIlP 187 (534)
.+..+++.|+++|++|.+..++-.+
T Consensus 23 ~l~~~~l~g~~~~~v~~~~~~~~~~ 47 (130)
T PF12821_consen 23 ALPWAGLIGALGWLVYLLLSAFGLG 47 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3667788999999999988875444
No 144
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.09 E-value=3e+02 Score=32.32 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=8.2
Q ss_pred HHHHhcCCCHHHHHHHH
Q 009455 82 SFLEKKGLTKEEIDEAF 98 (534)
Q Consensus 82 ~FLesKGLT~eEI~~Al 98 (534)
+||++..=..+.+...+
T Consensus 402 ~fl~~~~~~~dsl~~l~ 418 (717)
T PF10168_consen 402 EFLESDEEDKDSLQELA 418 (717)
T ss_pred HHhcccCCccchhhhhc
Confidence 35555444444444443
No 145
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.04 E-value=6.2e+02 Score=22.48 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009455 159 HWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 191 (534)
Q Consensus 159 DWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~Lkp 191 (534)
+|-++.+.+++..++++-++ ++-+|++++|+-
T Consensus 3 ~i~~~ii~~~~~i~l~ii~~-~~~~~~~~~l~~ 34 (108)
T PF09682_consen 3 QITNIIITVALSIVLAIIAG-IIVKYVIKYLKK 34 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34555555444443433333 334577777654
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.02 E-value=5e+02 Score=27.14 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=7.0
Q ss_pred cccchhHHH
Q 009455 155 MSRFHWYHA 163 (534)
Q Consensus 155 ~prrDWRDy 163 (534)
..+.+|++|
T Consensus 134 ~aK~~WYeW 142 (325)
T PF08317_consen 134 EAKKMWYEW 142 (325)
T ss_pred HHHHHHHHH
Confidence 467789988
No 147
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.01 E-value=3.1e+02 Score=33.23 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCCCchHHHHHHHHhhCCCCCCcccCCCCCCCCCCCC
Q 009455 329 APHPKSYMEIMAMVQRGEKPPNIRDINDLPPNPNQQL 365 (534)
Q Consensus 329 ~~hp~sy~eim~m~qrg~~p~~i~di~d~ppnp~~~~ 365 (534)
+-||.+|+|-|. -+++|.++.-|.+.|||+..--
T Consensus 740 GWFPenyvEki~---~~e~p~~v~Pv~~l~~~~~psa 773 (1118)
T KOG1029|consen 740 GWFPENYVEKIP---AVETPGGVPPVQNLPPTMTPSA 773 (1118)
T ss_pred CcCcHHHHhhcc---cCCCCCCCCchhcCCCCCCccc
Confidence 457777777443 6777777777777777765444
Done!