Query 009455
Match_columns 534
No_of_seqs 167 out of 254
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 05:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ff5_A PEX14P, peroxisomal bio 99.8 4.8E-20 1.7E-24 144.3 5.4 50 52-101 5-54 (54)
2 2w84_A Peroxisomal membrane pr 99.8 9.4E-20 3.2E-24 149.1 6.1 53 53-105 11-63 (70)
3 3qh9_A Liprin-beta-2; coiled-c 54.1 79 0.0027 26.7 8.8 54 214-271 24-77 (81)
4 1v54_J Cytochrome C oxidase po 51.8 12 0.0004 29.7 3.3 28 156-183 25-53 (59)
5 2y69_J Cytochrome C oxidase po 50.5 12 0.0004 31.4 3.3 28 156-183 46-74 (80)
6 3nmd_A CGMP dependent protein 48.0 11 0.00038 31.2 2.7 39 238-276 26-68 (72)
7 3m66_A Mterf3, mterf domain-co 46.8 17 0.00058 34.4 4.3 35 68-102 64-101 (270)
8 1v54_D Cytochrome C oxidase su 45.9 21 0.0007 33.0 4.5 31 158-188 76-106 (147)
9 2y69_D Cytochrome C oxidase su 41.8 25 0.00086 33.1 4.5 31 158-188 98-128 (169)
10 3g67_A Methyl-accepting chemot 38.6 1.6E+02 0.0056 27.9 9.6 29 214-242 117-145 (213)
11 4fp9_B Mterf domain-containing 36.7 21 0.00073 36.1 3.4 35 68-102 69-103 (335)
12 3zx6_A HAMP, methyl-accepting 34.7 1.8E+02 0.0062 28.7 9.6 29 214-242 186-214 (341)
13 3hnw_A Uncharacterized protein 34.5 2.3E+02 0.008 25.3 9.5 62 214-275 66-130 (138)
14 2d9s_A CBL E3 ubiquitin protei 29.0 72 0.0024 25.1 4.4 34 70-103 2-35 (53)
15 3p8c_F ABL interactor 2; actin 28.1 2.9E+02 0.0099 25.8 9.1 27 252-278 72-98 (159)
16 1yku_A Hypothetical protein PX 27.4 61 0.0021 29.7 4.4 79 172-274 41-119 (136)
17 3n27_A Fusion glycoprotein F0, 27.4 1.2E+02 0.0041 25.6 5.8 33 250-282 15-47 (80)
18 1wp7_A Fusion protein; fusion 27.3 70 0.0024 27.5 4.4 31 250-280 15-45 (89)
19 1qu7_A Methyl-accepting chemot 27.3 1.6E+02 0.0053 27.9 7.4 28 214-241 106-133 (227)
20 2fyz_A Fusion protein, fusion 25.9 78 0.0027 25.4 4.3 44 231-281 14-57 (63)
21 2eqb_B RAB guanine nucleotide 25.9 3.2E+02 0.011 23.6 9.3 51 221-271 13-63 (97)
22 3mva_O Transcription terminati 24.5 46 0.0016 32.8 3.3 27 77-103 86-112 (343)
23 1ify_A HHR23A, UV excision rep 24.5 74 0.0025 23.6 3.7 31 73-103 4-34 (49)
24 3r1f_A ESX-1 secretion-associa 22.9 77 0.0026 27.6 4.1 29 74-102 5-40 (135)
25 1svf_A Protein (fusion glycopr 22.5 82 0.0028 25.4 3.8 42 232-280 12-53 (64)
26 3trt_A Vimentin; cytoskeleton, 22.4 2.8E+02 0.0097 21.7 8.2 18 250-267 58-75 (77)
27 2wvr_A Geminin; DNA replicatio 22.0 4.1E+02 0.014 25.9 9.1 71 212-283 96-168 (209)
28 3etw_A Adhesin A; antiparallel 21.6 2.3E+02 0.0078 25.3 6.9 68 214-281 14-101 (119)
29 2oo9_A E3 ubiquitin-protein li 21.6 1.1E+02 0.0036 23.6 4.0 29 75-103 2-30 (46)
No 1
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=99.79 E-value=4.8e-20 Score=144.33 Aligned_cols=50 Identities=54% Similarity=0.800 Sum_probs=47.9
Q ss_pred CccchHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhC
Q 009455 52 SEPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 101 (534)
Q Consensus 52 ~~~~Redlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra 101 (534)
..++|++||++||+||+||+|+++|+++||+||++||||++||++||+|+
T Consensus 5 ~~~~Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 5 SPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45789999999999999999999999999999999999999999999985
No 2
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=99.78 E-value=9.4e-20 Score=149.11 Aligned_cols=53 Identities=49% Similarity=0.695 Sum_probs=49.9
Q ss_pred ccchHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCCCCC
Q 009455 53 EPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPP 105 (534)
Q Consensus 53 ~~~Redlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~~~ 105 (534)
..+||+||++||+||+||+|+++|+++||+||++||||++||++||+|++...
T Consensus 11 ~~~Re~li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 11 VLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp SCCCHHHHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred CCchHHHHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 45899999999999999999999999999999999999999999999997644
No 3
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=54.09 E-value=79 Score=26.73 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009455 214 LAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSI 271 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si 271 (534)
+.+|+..++-.+.+.-++=...=.+|.++|+| |..|-+.|..-..||+.|...|
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~E----l~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAE----VAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999998888889999999887 8899999999999999998876
No 4
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=51.78 E-value=12 Score=29.67 Aligned_cols=28 Identities=7% Similarity=-0.296 Sum_probs=21.4
Q ss_pred ccchhHHH-HHHHHHHHHHhHHHHHHHHH
Q 009455 156 SRFHWYHA-VLAVGLLAASGAGTAVFFKK 183 (534)
Q Consensus 156 prrDWRDy-FIMAtv~gGvgYG~Y~L~Kr 183 (534)
++-|+-=| +.|+..++|++|++|.|++-
T Consensus 25 g~sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 25 GATDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566544 77888888999999999864
No 5
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=50.51 E-value=12 Score=31.42 Aligned_cols=28 Identities=7% Similarity=-0.296 Sum_probs=21.8
Q ss_pred ccchhHHH-HHHHHHHHHHhHHHHHHHHH
Q 009455 156 SRFHWYHA-VLAVGLLAASGAGTAVFFKK 183 (534)
Q Consensus 156 prrDWRDy-FIMAtv~gGvgYG~Y~L~Kr 183 (534)
++-||-=| +.|+..++|++|++|.|++-
T Consensus 46 grsd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 46 GATDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555 77888888999999999864
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.97 E-value=11 Score=31.17 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=19.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcC
Q 009455 238 ELLNSKNEERRYFSELMNLLDVQ----LQEMKSMSNSIRKLEG 276 (534)
Q Consensus 238 eLl~sk~eekk~L~~lt~~ld~q----~~ElKSl~~si~~L~~ 276 (534)
+++..|+++.+..+.+++.|++. ..+++.|...|..++.
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445555555555555544443 4444445555555543
No 7
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=46.77 E-value=17 Score=34.43 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCCCCCCCcHH---HHHHHHHhcCCCHHHHHHHHhhCC
Q 009455 68 SHPKVRGSPVI---YRRSFLEKKGLTKEEIDEAFRRVP 102 (534)
Q Consensus 68 ~dP~V~~sPl~---kKi~FLesKGLT~eEI~~Al~ra~ 102 (534)
.+|.+-...++ .+++||++.|++.++|-.+|.+.+
T Consensus 64 ~~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P 101 (270)
T 3m66_A 64 KNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAP 101 (270)
T ss_dssp HCTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred hCChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 35666666655 799999999999999999998774
No 8
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=45.88 E-value=21 Score=32.96 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 188 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~ 188 (534)
-.|+-+|..+.++.|++.++|.+.|.|+.|-
T Consensus 76 gewK~v~g~v~~~i~~s~~~f~~~r~~v~~p 106 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 106 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4899999998888999999999999998754
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=41.80 E-value=25 Score=33.09 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 188 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~ 188 (534)
-.|+-+|..+.++.|++.++|.+.|.|+.|-
T Consensus 98 gEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p 128 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 128 (169)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5899999988888999999999999999754
No 10
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=38.58 E-value=1.6e+02 Score=27.92 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009455 214 LAEEAAAAAKAAAAAASDVAKASQELLNS 242 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sevakt~qeLl~s 242 (534)
+++|...++.....++.+|.+.+.++...
T Consensus 117 VA~Evr~La~~t~~~~~~I~~~i~~i~~~ 145 (213)
T 3g67_A 117 VANEVQNLSNETNEVTKQIVEKAREILES 145 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777666666666666666665544
No 11
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=36.65 E-value=21 Score=36.07 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=32.2
Q ss_pred CCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009455 68 SHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVP 102 (534)
Q Consensus 68 ~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~ 102 (534)
.+|.+....+..+|.||.+.||+.++|-.+|++.+
T Consensus 69 ~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P 103 (335)
T 4fp9_B 69 VRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSP 103 (335)
T ss_dssp HCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCG
T ss_pred hCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhCh
Confidence 46999888899999999999999999999999984
No 12
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=34.69 E-value=1.8e+02 Score=28.68 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009455 214 LAEEAAAAAKAAAAAASDVAKASQELLNS 242 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sevakt~qeLl~s 242 (534)
.++|..+++.....++.+|...+.++...
T Consensus 186 VAdEVRkLAe~t~~at~~I~~~i~~~~~~ 214 (341)
T 3zx6_A 186 VAGEVRNLAQRSAQAAREIKSLIEDSVGK 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888777766544
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.54 E-value=2.3e+02 Score=25.30 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009455 214 LAEEAAAAAKAAAAAASDV---AKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 275 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sev---akt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 275 (534)
|++|.-.+......-..++ .+-+..|.+...+.+-.+..+.+.++....+++.|...+.+|+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554443333333222 2334444444344444477777777888888888877777776
No 14
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.99 E-value=72 Score=25.07 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=30.3
Q ss_pred CCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009455 70 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (534)
Q Consensus 70 P~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 103 (534)
|.+...|++.+|+=|-+-|.+.+++..||..+..
T Consensus 2 ~~~~~~~~e~~I~~L~~lGF~r~~ai~AL~~a~n 35 (53)
T 2d9s_A 2 SSGSSGQLSSEIERLMSQGYSYQDIQKALVIAHN 35 (53)
T ss_dssp CCSCCSCSHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred CCCCccchHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 5667788999999999999999999999998854
No 15
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.06 E-value=2.9e+02 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009455 252 ELMNLLDVQLQEMKSMSNSIRKLEGPS 278 (534)
Q Consensus 252 ~lt~~ld~q~~ElKSl~~si~~L~~~i 278 (534)
.++++||-|..+|+.|.++|+.|...+
T Consensus 72 ~ll~lLd~Q~~~l~~mes~v~~l~Q~v 98 (159)
T 3p8c_F 72 NVLQMLDIQASQLRRMESSINHISQTV 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998877443
No 16
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=27.41 E-value=61 Score=29.70 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=52.3
Q ss_pred HHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009455 172 ASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFS 251 (534)
Q Consensus 172 GvgYG~Y~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~ 251 (534)
.=|.++|.|++.|+.+-+ + +| ++..++.++|-.=.+..--|.++.-.-+..|+.+.
T Consensus 41 ~NG~~m~~lvi~~~~~~~-----s--~~-----------------~ie~la~KiA~ER~eA~~NIgeFVYN~N~GR~~i~ 96 (136)
T 1yku_A 41 KNGEHLLSAFIMYLKEEI-----S--LQ-----------------EIEITSKKIARERIDAKVNIAEFIHNTNVAKIEIM 96 (136)
T ss_dssp HHHHHHHHHHHHHHTTSS-----C--GG-----------------GGHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhccC-----C--HH-----------------HHHHHHHHHHHHHhhccccHHHHHHHcchhHHHHH
Confidence 446678999999887655 1 11 11222222222222222337888877788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 009455 252 ELMNLLDVQLQEMKSMSNSIRKL 274 (534)
Q Consensus 252 ~lt~~ld~q~~ElKSl~~si~~L 274 (534)
+.+..++-..+||+.+...|+.+
T Consensus 97 ~~l~~~~~~~~eL~~~i~kIN~~ 119 (136)
T 1yku_A 97 NILTLLNPDLQQYQALVKKINQF 119 (136)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998888654
No 17
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=27.39 E-value=1.2e+02 Score=25.58 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccC
Q 009455 250 FSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSG 282 (534)
Q Consensus 250 L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~ 282 (534)
+..+.++.....+-++.+-..|..+|+.||+-+
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~ 47 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSG 47 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 555566666666666666666777776665543
No 18
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=27.34 E-value=70 Score=27.47 Aligned_cols=31 Identities=3% Similarity=-0.036 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 009455 250 FSELMNLLDVQLQEMKSMSNSIRKLEGPSNN 280 (534)
Q Consensus 250 L~~lt~~ld~q~~ElKSl~~si~~L~~~id~ 280 (534)
|..+.++.....+.++.+..+|..+++.||+
T Consensus 15 I~~TNeAV~EVt~glsqlaVAIqaIQD~IN~ 45 (89)
T 1wp7_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYGGS 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666666666667777766654
No 19
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=27.25 E-value=1.6e+02 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009455 214 LAEEAAAAAKAAAAAASDVAKASQELLN 241 (534)
Q Consensus 214 i~eE~aea~ka~aaa~sevakt~qeLl~ 241 (534)
.++|...++.....++.+|.+.+.++..
T Consensus 106 VA~EVRkLA~~t~~at~~I~~~i~~~~~ 133 (227)
T 1qu7_A 106 VAGEVRNLAQRSAQAAREIKSLIEDSVG 133 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777776666543
No 20
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=25.88 E-value=78 Score=25.45 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009455 231 DVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 281 (534)
Q Consensus 231 evakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f 281 (534)
.-++.|..|..+ |..+.++.....+.++.+...+..+++.||+.
T Consensus 14 qNA~~I~~LK~S-------i~~TNeAV~el~~g~~~lavAv~~iQd~IN~~ 57 (63)
T 2fyz_A 14 TNARAIAAMKNS-------IQATNRAVFEVKEGTQRLAIAVQAIQDHINTI 57 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666 77788888888888888888898888766654
No 21
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.87 E-value=3.2e+02 Score=23.60 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009455 221 AAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSI 271 (534)
Q Consensus 221 a~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si 271 (534)
........++++..-...|+..-.+++..=...-+.+..+.+||-.|+.+|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666655555555555566677777777777665
No 22
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=24.52 E-value=46 Score=32.84 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009455 77 VIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (534)
Q Consensus 77 l~kKi~FLesKGLT~eEI~~Al~ra~~ 103 (534)
+.-+++||++.|++.++|-.++.+.+.
T Consensus 86 l~p~l~fL~~lG~s~~~i~~il~~~P~ 112 (343)
T 3mva_O 86 LSKRWDLWRKIVTSDLEIVNILERSPE 112 (343)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHCSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCCH
Confidence 778899999999999999999998864
No 23
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.49 E-value=74 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009455 73 RGSPVIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (534)
Q Consensus 73 ~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 103 (534)
.....+.+|+=|..-|.+.+++..||++++.
T Consensus 4 ~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~ 34 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYERERVVAALRASYN 34 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCHHHHHHHHHTTTS
T ss_pred CCccCHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 3455788999999999999999999998864
No 24
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=22.88 E-value=77 Score=27.63 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHh-------cCCCHHHHHHHHhhCC
Q 009455 74 GSPVIYRRSFLEK-------KGLTKEEIDEAFRRVP 102 (534)
Q Consensus 74 ~sPl~kKi~FLes-------KGLT~eEI~~Al~ra~ 102 (534)
...+..|+.+|.. |+||.+||-+++...|
T Consensus 5 ~~~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G 40 (135)
T 3r1f_A 5 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG 40 (135)
T ss_dssp -CCHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccC
Confidence 3568999999999 7899999999998443
No 25
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=22.50 E-value=82 Score=25.40 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 009455 232 VAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNN 280 (534)
Q Consensus 232 vakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~ 280 (534)
.++.|..|..+ |..+.++.......++.+...+..|++.||+
T Consensus 12 Na~~I~~LK~S-------i~~TNeAV~el~~g~~~lavAv~~lQd~IN~ 53 (64)
T 1svf_A 12 NAAAILNLKNA-------IQKTNAAVADVVQATQSLGTAVQAVQDHINS 53 (64)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555 6677777777777777777777777755544
No 26
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=22.36 E-value=2.8e+02 Score=21.68 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009455 250 FSELMNLLDVQLQEMKSM 267 (534)
Q Consensus 250 L~~lt~~ld~q~~ElKSl 267 (534)
+.++...+.+..-||-+|
T Consensus 58 i~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 58 STEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444545544444444444
No 27
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.01 E-value=4.1e+02 Score=25.87 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=40.1
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCccCC
Q 009455 212 PSLAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE-GPSNNSGR 283 (534)
Q Consensus 212 ~~i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~-~~id~f~~ 283 (534)
...-+++|+.+ +|..+++.+- +..++.+.+++++...|..-...|-....+.+-|..-|.+|- +..++|..
T Consensus 96 e~YWk~lAE~RR~AL~eaLeEN-~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~ 168 (209)
T 2wvr_A 96 SQYWKEVAEKRRKALYEALKEN-EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFES 168 (209)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 34678888887 8888888887 555566667777766665555555555555555544455543 34555544
No 28
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.62 E-value=2.3e+02 Score=25.26 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhh
Q 009455 214 LAEEAAAAAKAAAAAA---SDVAKASQELLNSKNEERRYF-----------------SELMNLLDVQLQEMKSMSNSIRK 273 (534)
Q Consensus 214 i~eE~aea~ka~aaa~---sevakt~qeLl~sk~eekk~L-----------------~~lt~~ld~q~~ElKSl~~si~~ 273 (534)
|+.|...+.+...+.+ ...+.+.+.-|+.+.+.++.+ .+.-+......+++|.|-.+|..
T Consensus 14 Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~ 93 (119)
T 3etw_A 14 LDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQ 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCCCcc
Q 009455 274 LEGPSNNS 281 (534)
Q Consensus 274 L~~~id~f 281 (534)
.+..||+|
T Consensus 94 qekiIdnF 101 (119)
T 3etw_A 94 QKAVISDF 101 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 29
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=21.59 E-value=1.1e+02 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009455 75 SPVIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (534)
Q Consensus 75 sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 103 (534)
++|+..|+=|-+-|.+.+.+..||..+..
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~N 30 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKALVIAQN 30 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhhc
Confidence 67999999999999999999999998864
Done!