Query 009455
Match_columns 534
No_of_seqs 167 out of 254
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 05:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009455.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009455hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 66.8 2.7 0.0002 36.5 4.6 32 157-188 72-103 (144)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 48.6 4.3 0.00031 26.1 1.9 17 167-183 7-23 (27)
3 d1tafb_ a.22.1.3 (B:) TAF(II)6 25.1 18 0.0013 27.9 2.3 28 58-99 42-69 (70)
4 d1v54j_ f.23.4.1 (J:) Mitochon 21.0 32 0.0024 25.6 3.0 19 164-182 34-52 (58)
5 d1khda1 a.46.2.1 (A:12-80) Ant 18.4 75 0.0054 22.7 4.6 42 58-99 18-59 (69)
6 d1ppje2 f.23.12.1 (E:1-69) Iro 16.5 57 0.0042 24.7 3.6 29 158-186 32-60 (69)
7 d2croa_ a.35.1.2 (A:) cro 434 15.9 59 0.0043 22.7 3.4 24 77-100 4-28 (65)
8 d1knca_ a.152.1.1 (A:) Antioxi 15.3 53 0.0038 28.3 3.6 44 55-101 114-157 (174)
9 d2hepa1 a.2.21.1 (A:1-42) Hypo 14.3 54 0.0039 23.0 2.7 20 77-96 6-29 (42)
10 d1vkea_ a.152.1.2 (A:) Hypothe 14.3 63 0.0046 25.8 3.6 43 56-101 42-84 (118)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=66.82 E-value=2.7 Score=36.48 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009455 157 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 188 (534)
Q Consensus 157 rrDWRDyFIMAtv~gGvgYG~Y~L~KrYIlP~ 188 (534)
.-+|+-+|..+.++.|++.++|.+.|.||.|-
T Consensus 72 ~gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 72 TNEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999875
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=48.56 E-value=4.3 Score=26.14 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHH
Q 009455 167 VGLLAASGAGTAVFFKK 183 (534)
Q Consensus 167 Atv~gGvgYG~Y~L~Kr 183 (534)
.+.++|++|.+|.-+||
T Consensus 7 ~~tl~glf~aayqqykr 23 (27)
T d2e74g1 7 FATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34578999999887775
No 3
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=25.07 E-value=18 Score=27.90 Aligned_cols=28 Identities=36% Similarity=0.657 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 009455 58 EQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 99 (534)
Q Consensus 58 dlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ 99 (534)
++++.|++|+.+-+ .+-||.++|+.||+
T Consensus 42 eiiQeA~KFMrhsk--------------R~~Ltt~Did~ALk 69 (70)
T d1tafb_ 42 RIVQDAAKFMNHAK--------------RQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHTT--------------CSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc--------------cCcCcHHHHHHHHc
Confidence 78999999998864 37799999999996
No 4
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.96 E-value=32 Score=25.55 Aligned_cols=19 Identities=11% Similarity=-0.249 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 009455 164 VLAVGLLAASGAGTAVFFK 182 (534)
Q Consensus 164 FIMAtv~gGvgYG~Y~L~K 182 (534)
+-|+-.++|++|.+|.|+.
T Consensus 34 ~Tm~L~~~G~~~s~~~l~~ 52 (58)
T d1v54j_ 34 VTMTLCLGGTLYSLYCLGW 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6688889999999998875
No 5
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=18.42 E-value=75 Score=22.74 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 009455 58 EQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 99 (534)
Q Consensus 58 dlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ 99 (534)
+-+..++.-+-+..|-+.-+..=.--|..||+|.+||-.+.+
T Consensus 18 ee~~~~~~~i~~g~~~d~qiaafL~al~~kg~t~dEi~g~~~ 59 (69)
T d1khda1 18 EESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAAS 59 (69)
T ss_dssp HHHHHHHHHHTTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444555666666666554444434445789999999987654
No 6
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.47 E-value=57 Score=24.73 Aligned_cols=29 Identities=0% Similarity=-0.088 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 009455 158 FHWYHAVLAVGLLAASGAGTAVFFKKSLI 186 (534)
Q Consensus 158 rDWRDyFIMAtv~gGvgYG~Y~L~KrYIl 186 (534)
|.=.-||+.++...+..||+-.++.++|.
T Consensus 32 Rk~fsYl~~g~~~v~~ay~AK~~V~~fvs 60 (69)
T d1ppje2 32 RKGFSYLVTATTTVGVAYAAKNVVSQFVS 60 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hceehhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888888877775
No 7
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=15.86 E-value=59 Score=22.71 Aligned_cols=24 Identities=13% Similarity=-0.065 Sum_probs=19.5
Q ss_pred HHHHHHHH-HhcCCCHHHHHHHHhh
Q 009455 77 VIYRRSFL-EKKGLTKEEIDEAFRR 100 (534)
Q Consensus 77 l~kKi~FL-esKGLT~eEI~~Al~r 100 (534)
+.+|+..| +.+|||.+|+-+++.-
T Consensus 4 i~~rlr~~R~~~gltq~~lA~~~gv 28 (65)
T d2croa_ 4 LSERLKKRRIALKMTQTELATKAGV 28 (65)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCc
Confidence 56677766 7899999999998854
No 8
>d1knca_ a.152.1.1 (A:) Antioxidant defense protein AhpD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.28 E-value=53 Score=28.34 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=33.4
Q ss_pred chHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhC
Q 009455 55 MREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 101 (534)
Q Consensus 55 ~Redlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra 101 (534)
..-+||.-||+-...= .--+..=..-+++.|+|++||.++++-+
T Consensus 114 ~~~ELi~LavS~~ngC---~~Ci~~H~~~a~~~G~t~eeI~eai~ia 157 (174)
T d1knca_ 114 ANFELWSFAVSAINGC---SHCLVAHEHTLRTVGVDREAIFEALKAA 157 (174)
T ss_dssp HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3458888888765541 2236677888999999999999999865
No 9
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=14.34 E-value=54 Score=22.96 Aligned_cols=20 Identities=40% Similarity=0.298 Sum_probs=15.2
Q ss_pred HHHHHHHHHhc----CCCHHHHHH
Q 009455 77 VIYRRSFLEKK----GLTKEEIDE 96 (534)
Q Consensus 77 l~kKi~FLesK----GLT~eEI~~ 96 (534)
.-.||.+|-+| |||.+|..+
T Consensus 6 ~i~RINeLakK~K~~gLT~~E~~E 29 (42)
T d2hepa1 6 KIARINELAAKAKAGVITEEEKAE 29 (42)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHH
Confidence 34678888654 999999875
No 10
>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga maritima [TaxId: 2336]}
Probab=14.27 E-value=63 Score=25.82 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhC
Q 009455 56 REEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 101 (534)
Q Consensus 56 Redlv~sAv~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra 101 (534)
-.+||.-|+.....= .--+..-+.-..+-|+|.+||.+|+.-+
T Consensus 42 ~keLi~la~s~~~~c---~~c~~~H~~~A~~~G~t~eEI~Eal~va 84 (118)
T d1vkea_ 42 TKELMGLVASTVLRC---DDCIRYHLVRCVQEGASDEEIFEALDIA 84 (118)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 458899999888541 2336777888999999999999999755
Done!