BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009457
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 128 SPLYSAAVQDHLDVVNTILDA--DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
+PL+ AA HL+VV +L+A DV+ KNG+T LH AAR G + +V L++ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS 245
V KDK G+T LH+A + VV+ +L A + N +DK G T +H+A R ++V
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 118
Query: 246 LLL 248
LLL
Sbjct: 119 LLL 121
Score = 74.3 bits (181), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH 218
NG+T LH AAR G + +V L++ + V KDK G+T LH+A + VV+ +L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 219 LILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDST 278
+ N +DK G T +H+A R ++V LLL DVNA + T + LA + +
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAAR----NGH 113
Query: 279 LEIKEALAEAGA 290
LE+ + L EAGA
Sbjct: 114 LEVVKLLLEAGA 125
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116
G T L+++A N ++ LL+ V + ++ H+AA+ GHL + K L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 117 ELCKSCDSSNTSPLYSAAVQDHLDVVNTILDA--DVSCTRIVRKNGKTALHTAARYGLIN 174
++ + D + +PL+ AA HL+VV +L+A DV+ KNG+T LH AAR G +
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLE 115
Query: 175 IVTALID 181
+V L++
Sbjct: 116 VVKLLLE 122
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 18 AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
A R+G LE +K +++ A D G T L+++A N ++ LL
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKD-------------KNGRTPLHLAARNGHLEVVKLLL 55
Query: 78 KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137
+ V + ++ H+AA+ GHL + K L+ ++ + D + +PL+ AA
Sbjct: 56 EAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 112
Query: 138 HLDVVNTILDA 148
HL+VV +L+A
Sbjct: 113 HLEVVKLLLEA 123
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV--SIW 115
ET L+++A ++ LL+ + V +++ D H AA+ GH + K L+ +
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
P L + + PL+ AA + H++ V +L+ + S + +K G T LH AA+YG + +
Sbjct: 106 PNLATTAGHT---PLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRV 161
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL---SADHLILNERDKKGNTAV 232
L++RD K G T LH+AV +V+ +L + H G T +
Sbjct: 162 AELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH----SPAWNGYTPL 216
Query: 233 HIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
HIA ++ + ++ LL Y NA + Q T + LA
Sbjct: 217 HIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLA 252
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 93/232 (40%), Gaps = 56/232 (24%)
Query: 93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNT---SPLYSAAVQDHLDVVNTILD-- 147
+ HVA+ GHL I K L+ + S + SN +PL+ AA H +V +L
Sbjct: 15 LTPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70
Query: 148 -----------------ADVSCTRIVR-------------KNGKTALHTAARYGLINIVT 177
A + T +V+ G T LH AAR G + V
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 178 ALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATR 237
AL++++ + KKG T LH+A K V E +L D N K G T +H+A
Sbjct: 131 ALLEKEASQACMT-KKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVH 188
Query: 238 KCRPQIVSLLL------------SYTSIDVNAINNQRETAMDLADKLQYGDS 277
IV LLL YT + + A NQ E A L LQYG S
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL---LQYGGS 237
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 16/186 (8%)
Query: 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116
G T L+I+A N ++ LL++ S + H+AA++GH E+V++
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGS--ANAESVQGVTPLHLAAQEGH----AEMVALL- 264
Query: 117 ELCKSCDS-----SNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171
L K + S +PL+ A + H+ V + ++ V R G T LH A+ YG
Sbjct: 265 -LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM-GYTPLHVASHYG 322
Query: 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA 231
I +V L+ + V K K G + LH A + +V +L + NE G T
Sbjct: 323 NIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTP 380
Query: 232 VHIATR 237
+ IA R
Sbjct: 381 LAIAKR 386
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
K+G T LH AAR G + IV L+ + V KDK G T LH+A + +VE +L A
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
+ N +DK G T +H+A R+ +IV +LL DVNA + +T DLA + + D
Sbjct: 92 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIREGHED- 148
Query: 278 TLEIKEALAEAG 289
I E L +A
Sbjct: 149 ---IAEVLQKAA 157
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D +PL+ AA + HL++V +L ADV+ K+G T LH AAR G + IV L+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK---DKDGYTPLHLAAREGHLEIVEVLL 88
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR 240
+ V KDK G T LH+A + +VE +L A + N +DK G T +A R+
Sbjct: 89 KAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIREGH 146
Query: 241 PQIVSLL 247
I +L
Sbjct: 147 EDIAEVL 153
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144
V + + H+AA++GHL I + L+ ++ + D +PL+ AA + HL++V
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 145 ILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+L ADV+ K+G T LH AAR G + IV L+ + V +DK G+T +A+
Sbjct: 87 LLKAGADVNAK---DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAI 142
Query: 203 KGQCPSVVEYILSA 216
+ + E + A
Sbjct: 143 REGHEDIAEVLQKA 156
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
GK L AAR G + V L+ + V KDK G T LH+A + +VE +L A
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
+ N +DK G T +H+A R+ +IV +LL DVNA + T + LA + + L
Sbjct: 61 V-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAR----EGHL 114
Query: 280 EIKEALAEAGA 290
EI E L +AGA
Sbjct: 115 EIVEVLLKAGA 125
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
K+G T LH AAR G + IV L+ + V KDK G T LH+A + +VE +L A
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
+ N +DK G T +H+A R+ +IV +LL DVNA + +T DLA
Sbjct: 92 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLA 141
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D +PL+ AA + HL++V +L ADV+ K+G T LH AAR G + IV L+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK---DKDGYTPLHLAAREGHLEIVEVLL 88
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR 240
+ V KDK G T LH+A + +VE +L A + N +DK G T +A
Sbjct: 89 KAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGN 146
Query: 241 PQIVSLL 247
I +L
Sbjct: 147 EDIAEVL 153
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144
V + + H+AA++GHL I + L+ ++ + D +PL+ AA + HL++V
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 145 ILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+L ADV+ K+G T LH AAR G + IV L+ + V +DK G+T +A+
Sbjct: 87 LLKAGADVNAK---DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAI 142
Query: 203 KGQCPSVVEYILSA 216
+ E + A
Sbjct: 143 DNGNEDIAEVLQKA 156
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
GK L AAR G + V L+ + V KDK G T LH+A + +VE +L A
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
+ N +DK G T +H+A R+ +IV +LL DVNA + T + LA + + L
Sbjct: 61 V-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAR----EGHL 114
Query: 280 EIKEALAEAGA 290
EI E L +AGA
Sbjct: 115 EIVEVLLKAGA 125
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
K+G T LH AAR G + IV L+ + V KDK G T LH+A + +VE +L A
Sbjct: 45 KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
+ N +DK G T +H+A R+ +IV +LL DVNA + +TA D++
Sbjct: 104 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDIS 153
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D +PL+ AA + HL++V +L ADV+ K+G T LH AAR G + IV L+
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK---DKDGYTPLHLAAREGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
+ V KDK G T LH+A + +VE +L A + N +DK G TA I+
Sbjct: 101 KAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTAFDIS 153
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
GK L AAR G + V L+ + V KDK G T LH+A + +VE +L A
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
+ N +DK G T +H+A R+ +IV +LL DVNA + T + LA + + L
Sbjct: 73 V-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAR----EGHL 126
Query: 280 EIKEALAEAGA 290
EI E L +AGA
Sbjct: 127 EIVEVLLKAGA 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144
V + + H+AA++GHL I + L+ ++ + D +PL+ AA + HL++V
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 145 ILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+L ADV+ K+G T LH AAR G + IV L+ + V +DK G+TA +++
Sbjct: 99 LLKAGADVNAK---DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISI 154
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH 218
NG+T LH AAR G + +V L++ + V KDK G+T LH+A + VV+ +L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 219 LILNERDKKGNTAVHIATRKCRPQIVSLLL 248
+ N +DK G T +H+A R ++V LLL
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 128 SPLYSAAVQDHLDVVNTILDA--DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
+PL+ AA HL+VV +L+A DV+ KNG+T LH AAR G + +V L++ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
V KDK G+T LH+A + VV+ +L A
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AA+ GHL + K L+ ++ + D + +PL+ AA HL+VV +L+ ADV+
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 154 RIVRKNGKTALHTAARYGLINIVTALID 181
KNG+T LH AAR G + +V L++
Sbjct: 65 ---DKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+T LH+A + VV+ +L A + N +DK G T +H+A R ++V LLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
DVNA + T + LA + + LE+ + L EAGA
Sbjct: 60 DVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGA 92
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116
G T L+++A N ++ LL+ V + ++ H+AA+ GHL + K L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 117 ELCKSCDSSNTSPLYSAAVQDHLDVVNTILDA 148
++ + D + +PL+ AA HL+VV +L+A
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 130 LYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR--DPE 185
L AA + D V +L+ ADV+ + +GKT LH AA G +V L+ + DP
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASD---SDGKTPLHLAAENGHKEVVKLLLSQGADP- 63
Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQI 243
KD G+T LH+A + VV+ +LS AD N +D G T +H+A ++
Sbjct: 64 --NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEV 118
Query: 244 VSLLLSYTSIDVNAINNQRETAMDLA 269
V LLLS + D N ++ T +DLA
Sbjct: 119 VKLLLSQGA-DPNTSDSDGRTPLDLA 143
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 89 SRSDMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD 147
S SD T H+AA+ GH + K L+S + + DS +PL+ AA H +VV +L
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLS 91
Query: 148 --ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMA 201
AD + +GKT LH AA G +V L+ + DP D G+T L +A
Sbjct: 92 QGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDSDGRTPLDLA 143
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 13/235 (5%)
Query: 86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTI 145
K+ ++ + H AA+ GH+ I LV + +C +PL AA +HL+ V +
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 146 LDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQ 205
+ A + G T LH AA+ G +V L+ V +D G T + A + +
Sbjct: 64 IKAG-ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 206 CPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
+V+ +LS I N RD + N +H A I +LL+ D++A+N ++
Sbjct: 123 HVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSP 180
Query: 266 MDLADKL-QYG--------DSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSD 311
+ +A + +Y DS + +K E + A QV A+++ + + D
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
+ D++ T+PL+ AA HL++V +L ADV + + G T LH AA +G + IV
Sbjct: 42 AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF---GYTPLHLAAYWGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
L+ + V D G T LH+A K +VE +L AD +N +DK G TA I+
Sbjct: 99 LLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 153
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLIL 221
L AAR G + V L+ + V D G T LH+A +VE +L AD +
Sbjct: 18 LLEAARAGQDDEVRILMANGAD-VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD---V 73
Query: 222 NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEI 281
+ D G T +H+A +IV +LL DVNA+++ T + LA K Y LEI
Sbjct: 74 DASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGY----LEI 128
Query: 282 KEALAEAGA 290
E L + GA
Sbjct: 129 VEVLLKHGA 137
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 54 NDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
++TG T L+++A + +I LLK DV+ + + + H+AA GHL I + L+
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPL---HLAAYWGHLEIVEVLL 100
Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTAL 164
++ + DS +PL+ AA +L++V +L ADV+ K GKTA
Sbjct: 101 KNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ---DKFGKTAF 150
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL A+ +N D G T +H+A +IV +LL + +
Sbjct: 15 GRKLLEAARAGQDDEV--RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA- 71
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
DV+A + T + LA + LEI E L + GA
Sbjct: 72 DVDASDVFGYTPLHLAAYWGH----LEIVEVLLKNGA 104
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D S +PL+ AA++ HL++V +L ADV+ K G T LH AA YG + IV L+
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA---DKMGDTPLHLAALYGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
+ V D G T LH+A +VE +L AD +N +DK G TA I+
Sbjct: 101 KNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDIS 153
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--A 216
+GKT LH AA G + IV L+ + V DK G T LH+A +VE +L A
Sbjct: 46 SGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
D +N D G T +H+A +IV +LL Y + DVNA + +TA D++
Sbjct: 105 D---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA-DVNAQDKFGKTAFDIS 153
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144
V S H+AA KGHL I + L+ ++ + D +PL+ AA+ HL++V
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEV 98
Query: 145 ILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+L ADV+ T G T LH AA G + IV L+ + V +DK G+TA +++
Sbjct: 99 LLKNGADVNATDTY---GFTPLHLAADAGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISI 154
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHM-AVKGQCPSVVEYILS--A 216
GK L AAR G + V L+ + V +D G+T LH+ A+KG +VE +L A
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGAD-VNAEDDSGKTPLHLAAIKGHL-EIVEVLLKHGA 71
Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD 276
D +N DK G+T +H+A +IV +LL DVNA + T + LA +
Sbjct: 72 D---VNAADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGH-- 125
Query: 277 STLEIKEALAEAGA 290
LEI E L + GA
Sbjct: 126 --LEIVEVLLKYGA 137
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 130 LYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIV 187
L AA + D V +++ ADV+ + +G+T LH AA G +V LI + + V
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASD---SDGRTPLHHAAENGHKEVVKLLISKGAD-V 63
Query: 188 TIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVS 245
KD G+T LH A + VV+ ++S AD +N +D G T +H A ++V
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVK 120
Query: 246 LLLSYTSIDVNAINNQRETAMDLA 269
LL+S DVN ++ T +DLA
Sbjct: 121 LLIS-KGADVNTSDSDGRTPLDLA 143
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDI 72
+ A +G+ + +K++I+N A D G T L+ +A N +++
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSD-------------GRTPLHHAAENGHKEV 52
Query: 73 FSCLL-KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLY 131
L+ K DV R+ + H AA+ GH + K L+S ++ + DS +PL+
Sbjct: 53 VKLLISKGADVNAKDSDGRTPL---HHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLH 108
Query: 132 SAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTI 189
AA H +VV ++ ADV+ + +G+T L A +G + E+V +
Sbjct: 109 HAAENGHKEVVKLLISKGADVNTS---DSDGRTPLDLAREHG-----------NEEVVKL 154
Query: 190 KDKKG 194
+K+G
Sbjct: 155 LEKQG 159
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AA GHL I + L+ ++ S D + +PL+ AA HL++V +L ADV+
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNA- 108
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+G T LH AA+YG + IV L+ + V +DK G+TA +++
Sbjct: 109 --YDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
ADV+ T +G T LH AA G + IV L+ + V D G T LH+A
Sbjct: 38 ADVNATD---NDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
+VE +L AD +N D G+T +H+A + +IV +LL + + DVNA + +TA
Sbjct: 94 EIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
D++
Sbjct: 150 FDIS 153
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
G T LH AAR G + IV L+ ++ + D G T LH+A K +VE +L AD
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
+N D G+T +H+A +IV +LL Y + DVNA + +TA D++
Sbjct: 106 ---VNADDTIGSTPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDIS 153
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AA+ GHL I + L+ ++ + D S ++PL+ AA + HL++V +L ADV+
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD 109
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+ G T LH AA G + IV L+ + V +DK G+TA +++
Sbjct: 110 DTI---GSTPLHLAADTGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISI 154
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D+ +PL+ AA HL++V +L ADV+ +G T LH AA+ G + IV L+
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF---SGSTPLHLAAKRGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
+ V D G T LH+A +VE +L AD +N +DK G TA I+
Sbjct: 101 KYGAD-VNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDIS 153
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
GK L AAR G + V L+ + V +D G T LH+A + +VE +L AD
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
+N D G+T +H+A ++ +IV +LL Y + DVNA + T + LA +
Sbjct: 73 ---VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA-DVNADDTIGSTPLHLAADTGH--- 125
Query: 278 TLEIKEALAEAGA 290
LEI E L + GA
Sbjct: 126 -LEIVEVLLKYGA 137
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 53 QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
++ G+T L+++A +I LLK DV + S H+AAK+GHL I + L
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF---SGSTPLHLAAKRGHLEIVEVL 99
Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTAL 164
+ ++ + D+ ++PL+ AA HL++V +L ADV+ K GKTA
Sbjct: 100 LKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ---DKFGKTAF 150
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
ADV+ +V G T LH AA +G + IV L+ + V D G T LH+A
Sbjct: 38 ADVNAADVV---GWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
+VE +L AD +N +D G T +H+A + +IV +LL Y + DVNA + +TA
Sbjct: 94 EIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
D++
Sbjct: 150 FDIS 153
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
+ D +PL+ AA HL++V +L ADV+ + G T LH AA +G + IV
Sbjct: 42 AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL---GSTPLHLAAHFGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIAT 236
L+ + V KD G T LH+A +VE +L AD +N +DK G TA I+
Sbjct: 99 LLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Query: 237 RKCRPQIVSLL 247
+ +L
Sbjct: 155 NNGNEDLAEIL 165
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 16/102 (15%)
Query: 82 VEIVKI--RSRSDMNTF--------HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLY 131
+EIV++ ++ +D+N + H+AA GHL I + L+ ++ + D + +PL+
Sbjct: 60 LEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV-NAKDDNGITPLH 118
Query: 132 SAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYG 171
AA + HL++V +L ADV+ K GKTA + G
Sbjct: 119 LAANRGHLEIVEVLLKYGADVNAQ---DKFGKTAFDISINNG 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 159 NGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS- 215
+G+T LH AA G IV L+ + DP KD G+T LH A + +V+ +LS
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 216 -ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
AD N +D G T +H A +IV LLLS D N ++ T +DLA
Sbjct: 93 GADP---NAKDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNTSDSDGRTPLDLA 143
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 89 SRSDMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD 147
S SD T H AA+ GH I K L+S + + DS +PL+ AA H ++V +L
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Query: 148 --ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMA 201
AD + +G+T LH AA G IV L+ + DP D G+T L +A
Sbjct: 92 KGADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDSDGRTPLDLA 143
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 191 DKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
D G+T LH A + +V+ +LS AD N +D G T +H A +IV LLL
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 249 SYTSIDVNAINNQRETAMDLA 269
S D NA ++ T + A
Sbjct: 91 S-KGADPNAKDSDGRTPLHYA 110
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
ADV+ T + G T LH AA+ G + IV L+ + V D G T LH+A
Sbjct: 38 ADVNATDWL---GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
+VE +L AD +N +D +G T +H+A +IV +LL Y + DVNA + +TA
Sbjct: 94 EIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
D++
Sbjct: 150 FDIS 153
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AAK GHL I + L+ ++ + D+ +PL+ AA HL++V +L ADV+
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAK 109
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
G T LH AA G + IV L+ + V +DK G+TA +++
Sbjct: 110 DY---EGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISI 154
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL A+ +N D G+T +H+A + +IV +LL Y +
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA- 71
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
DVNA +N T + LA + LEI E L + GA
Sbjct: 72 DVNAWDNYGATPLHLAAD----NGHLEIVEVLLKHGA 104
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
G T LH AA +G + IV L+ + V KD G T LH+A + +VE +L AD
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
+N D G T +H+A ++ +IV +LL DVNA + +TA D++
Sbjct: 106 ---VNASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144
V R + H+AA GHL I + L+ ++ + DS +PL+ AA + HL++V
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 145 ILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+L ADV+ + +G T LH AA+ G + IV L+ + V +DK G+TA +++
Sbjct: 99 LLKNGADVNAS---DSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISI 154
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 89 SRSDMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD 147
S SD T H AAK+GH I K L+S ++ + DS +PL+ AA + H ++V ++
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Query: 148 --ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMA 201
ADV+ +G+T LH AA+ G IV LI + ++ T D G+T L +A
Sbjct: 92 KGADVNAKD---SDGRTPLHYAAKEGHKEIVKLLISKGADVNT-SDSDGRTPLDLA 143
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDI 72
+ A +G+ + +K++I+N A D G T L+ +A ++I
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSD-------------GRTPLHYAAKEGHKEI 52
Query: 73 FSCLL-KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLY 131
L+ K DV R+ + H AAK+GH I K L+S ++ + DS +PL+
Sbjct: 53 VKLLISKGADVNAKDSDGRTPL---HYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLH 108
Query: 132 SAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTI 189
AA + H ++V ++ ADV+ + +G+T L A +G + EIV +
Sbjct: 109 YAAKEGHKEIVKLLISKGADVNTS---DSDGRTPLDLAREHG-----------NEEIVKL 154
Query: 190 KDKKG 194
+K+G
Sbjct: 155 LEKQG 159
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 167 AARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNER 224
AA G + V LI+ + V D G+T LH A K +V+ ++S AD +N +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNAK 66
Query: 225 DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEA 284
D G T +H A ++ +IV LL+S DVNA ++ T + A K + EI +
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKDSDGRTPLHYAAK----EGHKEIVKL 121
Query: 285 LAEAGA 290
L GA
Sbjct: 122 LISKGA 127
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
K+G T LH AA+ G V L+ + + V + K G T LH+A K +V+ +L+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNA 257
AD +N R K GNT H+A + +IV LL DVNA
Sbjct: 66 AD---VNARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 192 KKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
K G T LH A K V+ +LS AD +N R K GNT +H+A + +IV LLL+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 250 YTSIDVNAINNQRETAMDLADK 271
DVNA + T LA K
Sbjct: 64 -KGADVNARSKDGNTPEHLAKK 84
Score = 36.2 bits (82), Expect = 0.046, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 92 DMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL--DA 148
D NT H AAK GH K+L+S ++ NT PL+ AA H ++V +L A
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNT-PLHLAAKNGHAEIVKLLLAKGA 66
Query: 149 DVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
DV+ K+G T H A + G IV L
Sbjct: 67 DVNAR---SKDGNTPEHLAKKNGHHEIVKLL 94
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 57 GETALYISAANNF-QDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW 115
G T L+ +A N +++ L K DV RS+ H+AAK GH I K L++
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDA 148
++ NT P + A H ++V +LDA
Sbjct: 66 ADVNARSKDGNT-PEHLAKKNGHHEIVK-LLDA 96
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
+ D+S +PL+ AA HL++V +L ADV+ I+ G T LH AA G + IV
Sbjct: 42 ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM---GSTPLHLAALIGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
L+ ++ + D G T LH+A +VE +L AD +N +DK G TA I+
Sbjct: 99 LLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 153
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
ADV+ T +G T LH AA YG + IV L+ ++ I D G T LH+A
Sbjct: 38 ADVNATD---ASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
+VE +L AD +N D G+T +H+A +IV +LL + + DVNA + +TA
Sbjct: 94 EIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
D++
Sbjct: 150 FDIS 153
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--A 148
S + H+AA GHL I + L+ ++ + D ++PL+ AA+ HL++V +L A
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 149 DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
DV+ V G T LH AA G + IV L+ + V +DK G+TA +++
Sbjct: 105 DVNA---VDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
+ D+S +PL+ AA HL++V +L ADV+ I G T LH AA G + IV
Sbjct: 42 ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX---GSTPLHLAALIGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
L+ ++ + D G T LH+A +VE +L AD +N +DK G TA I+
Sbjct: 99 LLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 153
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
ADV+ T +G T LH AA YG + IV L+ ++ I D G T LH+A
Sbjct: 38 ADVNATD---ASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
+VE +L AD +N D G+T +H+A +IV +LL + + DVNA + +TA
Sbjct: 94 EIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
D++
Sbjct: 150 FDIS 153
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--A 148
S + H+AA GHL I + L+ ++ + D ++PL+ AA+ HL++V +L A
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 149 DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
DV+ V G T LH AA G + IV L+ + V +DK G+TA +++
Sbjct: 105 DVNA---VDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 25/253 (9%)
Query: 53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
+ + G T L+ + + +DI LL+ + +R ++ F +AA G + + K +
Sbjct: 35 EEEGGWTPLHNAVQMSREDIVELLLRHGADPV--LRKKNGATPFLLAAIAGSVKLLKLFL 92
Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRI-------VRKNGKTA 163
S ++ CD + AAV + + + A+V+ R +RK G TA
Sbjct: 93 SKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151
Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLIL-- 221
L AA G + ++ L+D V D G+ AL A+ S VE I HL+L
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT---HLLLDH 208
Query: 222 ----NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
N R ++G T + +A K +V LL I++N ++ +TA+ LA +L+
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK-- 266
Query: 278 TLEIKEALAEAGA 290
+I E L + GA
Sbjct: 267 --KIAELLCKRGA 277
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D+S +PL+ AA HL++V +L ADV+ V G T L AA +G + IV L+
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNA---VDHAGMTPLRLAALFGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
+ V D +G T LH+A +VE +L AD +N +DK G TA I+
Sbjct: 101 KNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDIS 153
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144
V S H+AA GHL I + L+ ++ + D + +PL AA+ HL++V
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 145 ILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+L ADV+ + G T LH AA +G + IV L+ + V +DK G+TA +++
Sbjct: 99 LLKNGADVNANDM---EGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISI 154
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--A 216
+G T LH AA G + IV L+ ++ + D G T L +A +VE +L A
Sbjct: 46 SGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
D +N D +G+T +H+A +IV +LL DVNA + +TA D++
Sbjct: 105 D---VNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153
Score = 35.0 bits (79), Expect = 0.095, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
GK L AAR G + V L+ + V +D G T LH+A +VE +L AD
Sbjct: 15 GKKLLE-AARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
+N D G T + +A +IV +LL DVNA + + T + LA +
Sbjct: 73 ---VNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGH--- 125
Query: 278 TLEIKEALAEAGA 290
LEI E L + GA
Sbjct: 126 -LEIVEVLLKNGA 137
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNE 223
LH AA+ G ++ + +D + + DK G TAL+ A G +VE + + ++ LN+
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 224 RDKKGNTAVHIATRKCRPQIVSLLLS 249
++K G+TA+H A K IV LLL+
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 83 EIVKIRSRSDMNTFHVAAKKGHLG-IAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDV 141
+I+ I SD N + KG G I V+ E +S D+ PL+ AA + +L
Sbjct: 37 DIIYITDXSDTNWWK-GTSKGRTGLIPSNYVA---EQAESIDN----PLHEAAKRGNLSW 88
Query: 142 VNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMA 201
+ LD V + K G TAL+ A G +IV L + + ++K G TALH A
Sbjct: 89 LRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAA 147
Query: 202 VKGQCPSVVEYILS 215
+V+ +L+
Sbjct: 148 AWKGYADIVQLLLA 161
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 198 LHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNA 257
LH A K S + L + + +N DK G+TA++ A IV L + +I++N
Sbjct: 77 LHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 258 INNQRETAMDLADKLQYGD 276
N +TA+ A Y D
Sbjct: 136 QNKLGDTALHAAAWKGYAD 154
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTIL--DADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D +PL+ AA HL++V +L ADV+ V NG T LH AA G + IV L+
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA---VDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
+ V KD G T L++A +VE +L AD +N +DK G TA I+
Sbjct: 89 KYGAD-VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 141
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AA GHL I + L+ ++ + D++ T+PL+ AA HL++V +L ADV+
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK 97
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
G T L+ AA +G + IV L+ + V +DK G+TA +++
Sbjct: 98 ---DATGITPLYLAAYWGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 142
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 191 DKKGQTALHMAVKGQCPSVVEYIL--SADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
D G+T LHMA +VE +L AD +N D G T +H+A +IV +LL
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGAD---VNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
Y + DVNA + T + LA + LEI E L + GA
Sbjct: 89 KYGA-DVNAKDATGITPLYLAAYWGH----LEIVEVLLKHGA 125
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
+ D++ +PL+ AAV HL++V +L ADV + G T LH AA G + IV
Sbjct: 42 AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY---GFTPLHLAAMTGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
L+ ++ D G T LH+A +VE +L AD +N +DK G TA I+
Sbjct: 99 LLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDIS 153
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 145 ILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG 204
IL A+ + V G T LH AA G + IV L+ + V D G T LH+A
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMT 90
Query: 205 QCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQR 262
+VE +L AD +N D G+T +H+A + +IV +LL Y + DVNA +
Sbjct: 91 GHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFG 146
Query: 263 ETAMDLA 269
+TA D++
Sbjct: 147 KTAFDIS 153
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 54 NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS 113
+D G+ L + A ++ + DV V + + H+AA GHL I + L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAV---DNTGLTPLHLAAVSGHLEIVEVLLK 68
Query: 114 IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYG 171
++ + D +PL+ AA+ HL++V +L ADV+ + G T LH AA G
Sbjct: 69 HGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDM---TGSTPLHLAADEG 124
Query: 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+ IV L+ + V +DK G+TA +++
Sbjct: 125 HLEIVEVLLKYGAD-VNAQDKFGKTAFDISI 154
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AA GHL I + L+ ++ + DS +PL+ AA + HL+VV +L ADV+
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN 109
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
NG T LH AA G + IV L+ + V +DK G+TA +++
Sbjct: 110 ---DHNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
+ D +PL+ AA HL++V +L ADV+ + G T LH AA G + +V
Sbjct: 42 ASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL---GVTPLHLAADRGHLEVVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
L+ + V D G T LH+A +VE +L AD +N +DK G TA I+
Sbjct: 99 LLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL--SAD 217
GK L AAR G + V L+ + V D G T LH+ V ++E +L +AD
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGAD-VNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
+N DK G T +H+A + +IV +LL Y + DVNA++ Q T + LA + D
Sbjct: 73 ---VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA-DVNAMDYQGYTPLHLAAE----DG 124
Query: 278 TLEIKEALAEAGA 290
LEI E L + GA
Sbjct: 125 HLEIVEVLLKYGA 137
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+ GHL I + L+ ++ S D S +PL+ AA + HL++V +L ADV+
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA- 108
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
+ G T LH AA G + IV L+ + V +DK G+TA +++
Sbjct: 109 --MDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISI 154
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116
G T L++ N +I LLK+ V +S H+AA +GHL I + L+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKY--AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 117 ELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTAL 164
++ + D +PL+ AA HL++V +L ADV+ K GKTA
Sbjct: 105 DV-NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ---DKFGKTAF 150
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 25/253 (9%)
Query: 53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
+ + G T L+ + + +DI LL+ + +R ++ F +AA G + + K +
Sbjct: 55 EEEGGWTPLHNAVQMSREDIVELLLRHGADPV--LRKKNGATPFILAAIAGSVKLLKLFL 112
Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRI-------VRKNGKTA 163
S ++ CD + AAV + + + A+V+ R +RK G TA
Sbjct: 113 SKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171
Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLIL-- 221
L AA G + ++ L+D V D G+ AL A+ S VE I HL+L
Sbjct: 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT---HLLLDH 228
Query: 222 ----NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
N R ++G T + +A K +V LL I++N ++ +TA+ LA +L+
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK-- 286
Query: 278 TLEIKEALAEAGA 290
+I E L + GA
Sbjct: 287 --KIAELLCKRGA 297
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
+ G +H AAR G ++ + L++ + V I+D +G LH+A K VVE+++
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
+ R+ KG+TA +A R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 160 GKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL--S 215
G+TAL + G I L+ R +P++ KD+ G +H A + ++ +L
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDL---KDRTGNAVIHDAARAGFLDTLQTLLEFQ 93
Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
AD +N D +GN +H+A ++ ++V L+ +T+ +V N++ +TA DLA +L
Sbjct: 94 AD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA-RLYGR 149
Query: 276 DSTLEIKEALAEAGA 290
+ + + +A GA
Sbjct: 150 NEVVSLMQANGAGGA 164
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 17 SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCL 76
SA GDLE L +++ N A +G G TAL + N + L
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNG-------------FGRTALQVMKLGNPEIARRLL 57
Query: 77 LKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
L+ + ++ + R+ H AA+ G L + L+ ++ D+ PL+ AA +
Sbjct: 58 LRGANPDL---KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKE 113
Query: 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
HL VV ++ S G TA A YG +V+ +
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
+ G +H AAR G ++ + L++ + V I+D +G LH+A K VVE+++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
+ R+ KG+TA +A R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
G+TAL + G I L+ R +P++ KD+ G +H A + ++ +L +
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLE-N 92
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
+N D +GN +H+A ++ ++V L+ +T+ +V N++ +TA DLA +L +
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA-RLYGRNE 151
Query: 278 TLEIKEALAEAGA 290
+ + +A GA
Sbjct: 152 VVSLMQANGAGGA 164
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 17 SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCL 76
SA GDLE L +++ N A +G G TAL + N + L
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNG-------------FGRTALQVMKLGNPEIARRLL 57
Query: 77 LKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
L+ + ++ + R+ H AA+ G L + L+ ++ D+ PL+ AA +
Sbjct: 58 LRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNLPLHLAAKE 113
Query: 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
HL VV ++ S G TA A YG +V+ +
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 49 LMAMQNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
+ QN+ +T L+++ N +I LL CD E+ R + + H+A ++G L
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL---HLACEQGCLAS 93
Query: 108 AKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167
L +SC T+P HL ++IL A NG T LH A
Sbjct: 94 VGVLT-------QSC----TTP--------HL---HSILKA-------TNYNGHTCLHLA 124
Query: 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
+ +G + IV L+ ++ + G+TALH+AV Q P +V +L
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 128 SPLYSAAVQDHLDVVNTILDADVSCTRIVRK-NGKTALHTAARYGLINIVTALIDR--DP 184
+PL+ A + + ++ +L A C +R G T LH A G + V L P
Sbjct: 47 TPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 185 EIVTI---KDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241
+ +I + G T LH+A +VE ++S + + G TA+H+A P
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164
Query: 242 QIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE 287
+VSLLL DVN + Q + +L +G + I++ L +
Sbjct: 165 DLVSLLLK-CGADVNRVTYQGYSPY----QLTWGRPSTRIQQQLGQ 205
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 50 MAMQNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIA 108
+ QN+ +T L+++ N +I LL CD E+ R + + H+A ++G L
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL---HLACEQGCLASV 91
Query: 109 KELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA 168
L +SC T+P HL ++IL A NG T LH A+
Sbjct: 92 GVLT-------QSC----TTP--------HL---HSILKA-------TNYNGHTCLHLAS 122
Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
+G + IV L+ ++ + G+TALH+AV Q P +V +L
Sbjct: 123 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 128 SPLYSAAVQDHLDVVNTILDADVSCTRIVRK-NGKTALHTAARYGLINIVTALIDR--DP 184
+PL+ A + + ++ +L A C +R G T LH A G + V L P
Sbjct: 44 TPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 185 EIVTI---KDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241
+ +I + G T LH+A +VE ++S + + G TA+H+A P
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 161
Query: 242 QIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE 287
+VSLLL DVN + Q + +L +G + I++ L +
Sbjct: 162 DLVSLLLK-CGADVNRVTYQGYSPY----QLTWGRPSTRIQQQLGQ 202
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
+ G +H AAR G ++ + L++ + V I+D +G LH+A K VVE+++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
+ R+ KG+TA +A R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 160 GKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL--S 215
G+TAL + G I L+ R +P++ KD+ G +H A + ++ +L
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
AD +N D +GN +H+A ++ ++V L+ +T+ +V N++ +TA DLA
Sbjct: 94 AD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 17 SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCL 76
SA GDLE L +++ N A +G G TAL + N + L
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNG-------------FGRTALQVMKLGNPEIARRLL 57
Query: 77 LKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
L+ + ++ + R+ H AA+ G L + L+ ++ D+ PL+ AA +
Sbjct: 58 LRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKE 113
Query: 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
HL VV ++ S G TA A YG +V+ +
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
+ G +H AAR G ++ + L++ + V I+D +G LH+A K VVE+++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
+ R+ KG+TA +A R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 160 GKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL--S 215
G+TAL + G I L+ R +P++ KD+ G +H A + ++ +L
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
AD +N D +GN +H+A ++ ++V L+ +T+ +V N++ +TA DLA +L
Sbjct: 94 AD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA-RLYGR 149
Query: 276 DSTLEIKEALAEAGA 290
+ + + +A GA
Sbjct: 150 NEVVSLMQANGAGGA 164
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 17 SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCL 76
SA GDLE L +++ N A +G G TAL + N + L
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNG-------------FGRTALQVMKLGNPEIARRLL 57
Query: 77 LKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
L+ + ++ + R+ H AA+ G L + L+ ++ D+ PL+ AA +
Sbjct: 58 LRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKE 113
Query: 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
HL VV ++ S G TA A YG +V+ +
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
+ G +H AAR G ++ + L++ + V I+D +G LH+A K VVE+++
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
+ R+ KG+TA +A R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 160 GKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL--S 215
G+TAL + G I L+ R +P++ KD+ G +H A + ++ +L
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGQLDTLQTLLEFQ 93
Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
AD +N D +GN +H+A ++ ++V L+ +T+ +V N++ +TA DLA +L
Sbjct: 94 AD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA-RLYGR 149
Query: 276 DSTLEIKEALAEAGA 290
+ + + +A GA
Sbjct: 150 NEVVSLMQANGAGGA 164
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 17 SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCL 76
SA GDLE L +++ N A +G G TAL + N + L
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNG-------------FGRTALQVMKLGNPEIARRLL 57
Query: 77 LKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
L+ + ++ + R+ H AA+ G L + L+ ++ D+ PL+ AA +
Sbjct: 58 LRGANPDL---KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKE 113
Query: 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
HL VV ++ S G TA A YG +V+ +
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
GK L AAR G + V L+ + V D +G T LH+A P +VE +L AD
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGAD-VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
+N RD G T +H+A +IV +LL Y + DVNA + T + LA +
Sbjct: 73 ---VNARDTDGWTPLHLAADNGHLEIVEVLLKYGA-DVNAQDAYGLTPLHLAADRGH--- 125
Query: 278 TLEIKEALAEAGA 290
LEI E L + GA
Sbjct: 126 -LEIVEVLLKHGA 137
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AA GH I + L+ ++ + D+ +PL+ AA HL++V +L ADV+
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ 109
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
G T LH AA G + IV L+ + V +DK G+TA +++
Sbjct: 110 DAY---GLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
+D G T L+++A +I LLK V R H+AA GHL I + L+
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHG--ADVNARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTAL 164
++ + D+ +PL+ AA + HL++V +L ADV+ K GKTA
Sbjct: 101 KYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ---DKFGKTAF 150
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 51 AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKE 110
A D G+ L +AA ++ + DV + + H+AA G L I +
Sbjct: 1 AFGQDLGKKLLEAAAAGQDDEVRILMANGADVNAT---DDNGLTPLHLAAANGQLEIVEV 57
Query: 111 LVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAA 168
L+ ++ S DS+ +PL+ AA HL++V +L ADV+ + G T LH AA
Sbjct: 58 LLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVNA---YDRAGWTPLHLAA 113
Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV-KGQ 205
G + IV L+ + V +D G TA +++ +GQ
Sbjct: 114 LSGQLEIVEVLLKHGAD-VNAQDALGLTAFDISINQGQ 150
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
V D G T LH+A +VE +L AD +N D G T +H+A +IV
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD---VNASDSAGITPLHLAAYDGHLEIV 88
Query: 245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
+LL + + DVNA + T + LA LEI E L + GA
Sbjct: 89 EVLLKHGA-DVNAYDRAGWTPLHLAAL----SGQLEIVEVLLKHGA 129
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
P + SC S +D V++ + S + G+TALH AARY +
Sbjct: 13 PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
L++ + I+D G+T LH AV V + ++ L+ R G T + +A
Sbjct: 73 AKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Query: 236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
R ++ L++ + DVNA+++ ++A+
Sbjct: 132 ARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D +PL+ AA+ DHL++V +L ADV+ + G+T LH A YG + IV L+
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI---GETPLHLVAMYGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
+ V +DK G+TA +++
Sbjct: 101 KHGAD-VNAQDKFGKTAFDISI 121
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
GK L AAR G + V L+ + V +DK G T LH+A +VE +L AD
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGAD-VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
+N D G T +H+ +IV +LL + + DVNA + +TA D++
Sbjct: 73 ---VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDIS 120
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL A+ +N DK G T +H+A +IV +LL
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
DVNAI+ ET + L YG LEI E L + GA
Sbjct: 72 DVNAIDAIGETPLHLV--AMYGH--LEIVEVLLKHGA 104
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
P + SC S +D V++ + S + G+TALH AARY +
Sbjct: 14 PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 73
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
L++ + I+D G+T LH AV V + ++ L+ R G T + +A
Sbjct: 74 AKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 132
Query: 236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
R ++ L++ + DVNA+++ ++A+
Sbjct: 133 ARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 162
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 30/154 (19%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVR-KNGKTALHTAARYGLINIVTAL 179
+ D TSPL+ AA H +L A VS R R K +T LH AA G NIV L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--RDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 180 IDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKC 239
+ + V KD TALH A + VVE ++ K VH ++ C
Sbjct: 87 LKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLI------------KYGADVHTQSKFC 133
Query: 240 RPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQ 273
+ T+ D+ +I+N E DLA+ LQ
Sbjct: 134 K----------TAFDI-SIDNGNE---DLAEILQ 153
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
+ G+TALH AARY + L++ + I+D G+T LH AV V + +L
Sbjct: 20 RTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
L+ R G T + +A R ++ L++ + DVNA+++ ++A+
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLIN-SHADVNAVDDLGKSAL 126
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 191 DKKGQTALHMAVKGQCPSVVEYIL--SADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
D+ G+TALH+A + + +L SAD I +D G T +H A + +LL
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXI---QDNMGRTPLHAAVSADAQGVFQILL 75
Query: 249 SYTSIDVNAINNQRETAMDLADKL 272
+ D++A + T + LA +L
Sbjct: 76 RNRATDLDARMHDGTTPLILAARL 99
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA-DHLIL 221
LH A V L+ P ++ KD+ G+ LH +V Q + ++LS +++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 222 NE-RDKKGNTAVHIATRKCRPQIV-SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
++ D G T HIA ++V SL D+N I NQ T + LA G
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----VGKKWF 120
Query: 280 EIKEALAEAGA 290
E+ + L E GA
Sbjct: 121 EVSQFLIENGA 131
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 49 LMAMQNDTGETALYISAANNFQDIFSCLL-KFCDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
L+ ++ G L+ S + +I S LL K +V + S FH+A G+L +
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 108 AKELV--SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH 165
K L + P+L K + T L+ A + +V +++ S RI K + LH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTC-LHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLH 145
Query: 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTAL-HMAVKGQCPSVV--------EYIL-- 214
AA G + ++ L V +DK+G T L H +G + V EY L
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 215 ----SADHLILNERDKK 227
A+ + LNE+ KK
Sbjct: 206 NKGAKAEDVALNEQVKK 222
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 2/148 (1%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCT-RIVRKNGKTALHTAARYGLINIVTALID 181
D S +P + A +L+VV ++ D + + G T LH A + LI+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 182 RDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241
V IKDK Q LH A ++E + +N +DK+G T + A +
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 242 QIVSLLLSYTSIDVNAINNQRETAMDLA 269
LL+ + + ++N+ A D+A
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 127 TSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTA--LHTAARYGLINIVTALIDRDP 184
+SPL+ AA+ D++ +L + +N A LH A + G +V L+D +
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAGA---RNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 185 EIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV 244
+ KD G T L A G +V +L I N + KGNTA+H A + +V
Sbjct: 144 K-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVV 201
Query: 245 SLLLSYTSIDVNAINNQRETAMDLADK 271
LLL + + V +N ++ TA+D A++
Sbjct: 202 ELLLLHGA-SVQVLNKRQRTAVDCAEQ 227
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116
G + L+++A + D+ LLK R+ H+A ++GH + K L+
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 117 ELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167
+ K D S +PL A H ++V +L S K G TALH A
Sbjct: 144 KPNKK-DLSGNTPLIYACSGGHHELVALLLQHGASINASNNK-GNTALHEA 192
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA-DHLIL 221
LH A V L+ P ++ KD+ G+ LH +V Q + ++LS +++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 222 NE-RDKKGNTAVHIATRKCRPQIV-SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
++ D G T HIA ++V SL D+N I NQ T + LA G
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----VGKKWF 120
Query: 280 EIKEALAEAGA 290
E+ + L E GA
Sbjct: 121 EVSQFLIENGA 131
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 49 LMAMQNDTGETALYISAANNFQDIFSCLL-KFCDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
L+ ++ G L+ S + +I S LL K +V + S FH+A G+L +
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 108 AKELV--SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH 165
K L + P+L K + T L+ A + +V +++ S RI K + LH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTC-LHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLH 145
Query: 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTAL-HMAVKGQCPSVV--------EYIL-- 214
AA G + ++ L V +DK+G T L H +G + V EY L
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 215 ----SADHLILNERDKK 227
A+ + LNE+ KK
Sbjct: 206 NKGAKAEDVALNEQVKK 222
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 2/148 (1%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCT-RIVRKNGKTALHTAARYGLINIVTALID 181
D S +P + A +L+VV ++ D + + G T LH A + LI+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 182 RDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241
V IKDK Q LH A ++E + +N +DK+G T + A +
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 242 QIVSLLLSYTSIDVNAINNQRETAMDLA 269
LL+ + + ++N+ A D+A
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA-DHLIL 221
LH A V L+ P ++ KD+ G+ LH +V Q + ++LS +++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 222 NE-RDKKGNTAVHIATRKCRPQIV-SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
++ D G T HIA ++V SL D+N I NQ T + LA G
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----VGKKWF 120
Query: 280 EIKEALAEAGA 290
E+ + L E GA
Sbjct: 121 EVSQFLIENGA 131
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 49 LMAMQNDTGETALYISAANNFQDIFSCLL-KFCDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
L+ ++ G L+ S + +I S LL K +V + S FH+A G+L +
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 108 AKELV--SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH 165
K L + P+L K + T L+ A + +V +++ S RI K + LH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTC-LHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLH 145
Query: 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTAL-HMAVKGQCPSVV--------EYIL-- 214
AA G + ++ L V +DK+G T L H +G + V EY L
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Query: 215 ----SADHLILNERDKK 227
A+ + LNE+ KK
Sbjct: 206 NKGAKAEDVALNEQVKK 222
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 2/148 (1%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCT-RIVRKNGKTALHTAARYGLINIVTALID 181
D S +P + A +L+VV ++ D + + G T LH A + LI+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 182 RDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241
V IKDK Q LH A ++E + +N +DK+G T + A +
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 242 QIVSLLLSYTSIDVNAINNQRETAMDLA 269
LL+ + + ++N+ A D+A
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D + +PL+ AA + HL++V +L ADV+ + I G+T LH AA G + IV L+
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAATVGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
+ + V +DK G+TA +++
Sbjct: 101 EYGAD-VNAQDKFGKTAFDISI 121
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
V D G T LH+A K +VE +L AD +N D G T +H+A +IV
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDIWGRTPLHLAATVGHLEIV 96
Query: 245 SLLLSYTSIDVNAINNQRETAMDLA 269
+LL Y + DVNA + +TA D++
Sbjct: 97 EVLLEYGA-DVNAQDKFGKTAFDIS 120
Score = 36.2 bits (82), Expect = 0.046, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AAK+GHL I + L+ ++ S D +PL+ AA HL++V +L+ ADV+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 154 RIVRKNGKTAL 164
K GKTA
Sbjct: 110 ---DKFGKTAF 117
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D +PL+ AA DHL++V +L ADV+ +G T LH AA +G + IV L+
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH---DNDGSTPLHLAALFGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
+ V +DK G+TA +++
Sbjct: 101 KHGAD-VNAQDKFGKTAFDISI 121
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL A+ +N D+KGNT +H+A +IV +LL + +
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA- 71
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
DVNA +N T + LA + LEI E L + GA
Sbjct: 72 DVNAHDNDGSTPLHLAALFGH----LEIVEVLLKHGA 104
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
GK L AAR G + V L+ + V D+KG T LH+A +VE +L AD
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
+N D G+T +H+A +IV +LL + + DVNA + +TA D++
Sbjct: 73 ---VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA-DVNAQDKFGKTAFDIS 120
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D + +PL+ AA + HL++V +L ADV+ I G+T LH AA G + IV L+
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW---GRTPLHLAATVGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
+ + V +DK G+TA +++
Sbjct: 101 EYGAD-VNAQDKFGKTAFDISI 121
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
V D G T LH+A K +VE +L AD +N RD G T +H+A +IV
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLAATVGHLEIV 96
Query: 245 SLLLSYTSIDVNAINNQRETAMDLA 269
+LL Y + DVNA + +TA D++
Sbjct: 97 EVLLEYGA-DVNAQDKFGKTAFDIS 120
Score = 35.0 bits (79), Expect = 0.093, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AAK+GHL I + L+ ++ + D +PL+ AA HL++V +L+ ADV+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 154 RIVRKNGKTAL 164
K GKTA
Sbjct: 110 ---DKFGKTAF 117
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
+ G+TALH AARY + L++ + I+D G+T LH AV V + ++
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
L+ R G T + +A R ++ L++ + DVNA+++ ++A+
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 129
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 204 GQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRE 263
G P+V+ + + N+ D+ G TA+H+A R R LL S D N +N
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGR 59
Query: 264 TAM 266
T +
Sbjct: 60 TPL 62
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 191 DKKGQTALHMAVKGQCPSVVEYIL--SADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
D+ G+TALH+A + + +L SAD N +D G T +H A + +L+
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 249 SYTSIDVNAINNQRETAMDLADKL 272
+ D++A + T + LA +L
Sbjct: 79 RNRATDLDARMHDGTTPLILAARL 102
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D + +PL+ AA + HL++V +L ADV+ + G+T LH AA G + IV L+
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS---DSWGRTPLHLAATVGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
+ + V +DK G+TA +++
Sbjct: 101 EYGAD-VNAQDKFGKTAFDISI 121
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
V D G T LH+A K +VE +L AD +N D G T +H+A +IV
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDSWGRTPLHLAATVGHLEIV 96
Query: 245 SLLLSYTSIDVNAINNQRETAMDLA 269
+LL Y + DVNA + +TA D++
Sbjct: 97 EVLLEYGA-DVNAQDKFGKTAFDIS 120
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AAK+GHL I + L+ ++ S DS +PL+ AA HL++V +L+ ADV+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 154 RIVRKNGKTAL 164
K GKTA
Sbjct: 110 ---DKFGKTAF 117
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 40/188 (21%)
Query: 120 KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
+ D N + L+ AA+ + +D+V + ++ T LH A R G +++V L
Sbjct: 36 RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95
Query: 180 IDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI----------------- 220
+ DP ++ D +G + +H+A + S+V Y+++ +
Sbjct: 96 MKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR 152
Query: 221 ----------------LNERDK-KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRE 263
+N DK NTA+H A ++SLLL +V+A N + E
Sbjct: 153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGE 211
Query: 264 TAMDLADK 271
+A+DLA +
Sbjct: 212 SALDLAKQ 219
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH-LDVVNTILDADVSCTR 154
H+AA+ GH I L++ ++ D + +PL AA + H +D +L +VS
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMA 201
+ + TALH A G +++ L++ V ++ KG++AL +A
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLA 217
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCTR---IVRKNGKTALHTAARYGLINIVTAL 179
D +PL+ A VQ +L V+ +++ R I +T LH A L ++V L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 180 IDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL---SADHLILNERDKKGNTAVHIAT 236
+ + + D+ GQTA H+A + + P+ + +L + L L R+ G TA+H+A
Sbjct: 66 VTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 237 RKCRPQIVSLLLSYTSIDVNAIN 259
+ V LLL + D++A++
Sbjct: 125 NTECQETVQLLLERGA-DIDAVD 146
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH 218
+G TALH A V L++R +I + K G++ L AV+ S+V+ +L
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 219 LILNERDKKGNTAVHIAT-RKCRPQIVSLLLS 249
+ N + G++A+H A+ R P + +L+ S
Sbjct: 175 NV-NAQMYSGSSALHSASGRGLLPLVRTLVRS 205
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
P + SC S +D V++ + S + G TALH AA Y +
Sbjct: 13 PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDA 72
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
L++ + I+D G+T LH AV V + ++ L+ R G T + +A
Sbjct: 73 AKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Query: 236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
R ++ L++ + DVNA+++ ++A+
Sbjct: 132 ARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 87 IRSRSDMNT---FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVN 143
+ +R+D ++ H A GH I + L+ + + D + SPL+ AA ++V
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVK 90
Query: 144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALID--RDPEIVTIKDKKGQTALH-M 200
+L V +NG T LH AA I L++ +P+ KD TA+H
Sbjct: 91 ALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMHRA 146
Query: 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
A KG + +IL N +D +GNT +H+A + R + LL+S + + N
Sbjct: 147 AAKGNLKMI--HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIENK 203
Query: 261 QRETAMDLA 269
+ +T + +A
Sbjct: 204 EEKTPLQVA 212
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ 242
D + T D+ +TALH A +VE++L + +N++D G + +HIA R +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDE 87
Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLA 269
IV LL VNA+N T + A
Sbjct: 88 IVKALLG-KGAQVNAVNQNGCTPLHYA 113
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 87 IRSRSDMNT---FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVN 143
+ +R+D ++ H A GH I + L+ + + D + SPL+ AA ++V
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVK 91
Query: 144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALH-M 200
+L V +NG T LH AA I L++ +P+ KD TA+H
Sbjct: 92 ALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMHRA 147
Query: 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
A KG + +IL N +D +GNT +H+A + R + LL+S + + N
Sbjct: 148 AAKGNLKMI--HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIENK 204
Query: 261 QRETAMDLA 269
+ +T + +A
Sbjct: 205 EEKTPLQVA 213
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ 242
D + T D+ +TALH A +VE++L + +N++D G + +HIA R +
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDE 88
Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLA 269
IV LL VNA+N T + A
Sbjct: 89 IVKALLG-KGAQVNAVNQNGCTPLHYA 114
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 128 SPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIV 187
SPL AA ++ + ++ +L + G+TALH AA Y + L++ PE+V
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 188 ----TIKDKKGQTALHMAVKGQCPSVVEYILS 215
T + +GQTALH+AV Q ++V +L+
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 90/237 (37%), Gaps = 61/237 (25%)
Query: 58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPE 117
E+ L ++A N S LLKF E+ + R H+AA +L A L+ PE
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 118 LCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVT 177
L TS LY G+TALH A +N+V
Sbjct: 63 LVFE---PMTSELYE---------------------------GQTALHIAVINQNVNLVR 92
Query: 178 ALIDRDPEIVTIKDKKGQTALH-----MAVKGQCPSVVEYILSADHLI---------LNE 223
AL+ R ++ + + H + G+ P + ++ ++ +
Sbjct: 93 ALLARG---ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA 149
Query: 224 RDKKGNTAVHI------ATRKCRPQIVSLLLSYTSID-VNAI----NNQRETAMDLA 269
+D GNT +HI T C Q+ +LLLSY D + ++ NNQ T LA
Sbjct: 150 QDSLGNTVLHILILQPNKTFAC--QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
G+T LH A+ G I V L+ DP +KD G T LH A VVE +L
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAIN 259
L+ N + ++ +H A + IV LLLSY + NA+N
Sbjct: 67 ALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA-SRNAVN 106
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 54 NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS 113
N GET L+I++ DI S + ++ + H A GHL + EL+
Sbjct: 7 NHRGETLLHIASIKG--DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV-ELLL 63
Query: 114 IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS 151
L + N SPL+ AA H+D+V +L S
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
G+TAL A +G +++V AL+ + + V ++D G TAL A + + +L+
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC 241
Query: 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
++ D+ G+TA+ +A + +I S+L S +I
Sbjct: 242 DISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGK-----TALHTAARYGLINIVT 177
DS+ + L+ + + VV +LD+ V + G TAL T I V
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 178 ALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATR 237
L R I + GQTAL +AV VV+ +L+ + + N +D G+TA+ A
Sbjct: 168 QLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACE 225
Query: 238 KCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
+I LLL+ S D++ + TA+ +A
Sbjct: 226 HGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVH---IATRKCRPQ 242
+V I D G TALH +V VV+ +L + ++++++ G + + +AT K +
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 243 IVSLLLSYTSIDVNAINNQR-ETAMDLA 269
I ++L + ++NA +Q +TA+ LA
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLA 190
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ 242
D + T D+ +TALH A +VE++L + +N++D G + +HIA R +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDE 87
Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLA 269
IV LL VNA+N T + A
Sbjct: 88 IVKALL-VKGAHVNAVNQNGCTPLHYA 113
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 87 IRSRSDMNT---FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVN 143
+ +R+D ++ H A GH I + L+ + + D + SPL+ AA ++V
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVK 90
Query: 144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALID--RDPEIVTIKDKKGQTALH-M 200
+L + V +NG T LH AA I L++ +P+ KD TA+H
Sbjct: 91 ALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRA 146
Query: 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
A KG V +IL N +D +GNT +H+A + R + L++
Sbjct: 147 AAKGNLKMV--HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 99 AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIV 156
AAK G + K+L ++ C+ + ++PL+ AA + + VV +L ADV
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK--- 73
Query: 157 RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALH-MAVKGQ---CPSVVEY 212
K G LH A YG + L+ + +V + D T LH A KG+ C ++++
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 213 ILSADHLILNERDKKGNTAVHI 234
AD ++++ GNT + +
Sbjct: 133 --GADP---TKKNRDGNTPLDL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 99 AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIV 156
AAK G + K+L ++ C+ + ++PL+ AA + + VV +L ADV
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK--- 71
Query: 157 RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALH-MAVKGQ---CPSVVEY 212
K G LH A YG + L+ + +V + D T LH A KG+ C ++++
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 213 ILSADHLILNERDKKGNTAVHI 234
AD ++++ GNT + +
Sbjct: 131 --GADP---TKKNRDGNTPLDL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 99 AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIV 156
AAK G + K+L ++ C+ + ++PL+ AA + + VV +L ADV
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK--- 75
Query: 157 RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALH-MAVKGQ---CPSVVEY 212
K G LH A YG + L+ + +V + D T LH A KG+ C ++++
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 213 ILSADHLILNERDKKGNTAVHI 234
AD ++++ GNT + +
Sbjct: 135 --GADP---TKKNRDGNTPLDL 151
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 119 CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
S D++ +PL++A D + V +L + +G T L AAR + +V
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK 238
LI D +I D G+TALH A V IL H + +D K T + +A R+
Sbjct: 137 LITADADI-NAADNSGKTALHWAAAVNNTEAVN-ILLMHHANRDAQDDKDETPLFLAARE 194
Query: 239 CRPQIVSLLL 248
+ LL
Sbjct: 195 GSYEASKALL 204
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 141 VVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHM 200
V++ +L + K G+T+LH AAR+ + L+D + +D G+T LH
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHA 90
Query: 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
AV V + +L LN R G T + +A R +V L++ + D+NA +N
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA-DINAADN 149
Query: 261 QRETAM 266
+TA+
Sbjct: 150 SGKTAL 155
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Query: 107 IAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHT 166
+ +L++ EL + D + + L+ AA D +LDA G+T LH
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS-QDNTGRTPLHA 90
Query: 167 AARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDK 226
A + + L+ + + G T L +A + +VE +++AD I N D
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADN 149
Query: 227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
G TA+H A + V++LL + + + +A +++ ET + LA
Sbjct: 150 SGKTALHWAAAVNNTEAVNILLMHHA-NRDAQDDKDETPLFLA 191
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 175 IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHI 234
+++ L+ + E+ DK G+T+LH+A + + +L A N +D G T +H
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG-ADANSQDNTGRTPLHA 90
Query: 235 ATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKL 272
A + +LL + ++NA + T + LA +L
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL 128
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 75 CLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP-ELCKSCDSSNTSPLYSA 133
CLL D EIVK+ + F +AA+ GHL + L + P E+ + N A
Sbjct: 112 CLLLTSD-EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLA 170
Query: 134 AVQDHLDVVNTILD-ADVSCTRIVRKNGKTALHTAA-RYGLINIVTALID 181
A HL V+N + + A T ++ A AA G N++ L+D
Sbjct: 171 AENGHLHVLNRLCELAPTEATAXIQAENYYAFRWAAVGRGHHNVINFLLD 220
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D +PLY A HL++V +L ADV+ + G T LH AA G + I L+
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI---GFTPLHLAAFIGHLEIAEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
+ V +DK G+TA +++
Sbjct: 101 KHGAD-VNAQDKFGKTAFDISI 121
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 128 SPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
+PL+ AA+ HL++V +L ADV+ T G+T LH AA + IV L+ +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNAT---GNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 186 IVTIKDKKGQTALHMAV 202
V +DK G+TA +++
Sbjct: 106 -VNAQDKFGKTAFDISI 121
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL+A+ +N D G+T +H+A +IV +LL
Sbjct: 15 GKKLLEAARAGQDDEV--RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGA 71
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
DVNA N T + LA + D LEI E L + GA
Sbjct: 72 DVNATGNTGRTPLHLA---AWADH-LEIVEVLLKHGA 104
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H+AA GHL I + L+ ++ + ++ T PL+ AA DHL++V +L ADV+
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRT-PLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 154 RIVRKNGKTAL 164
K GKTA
Sbjct: 110 ---DKFGKTAF 117
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 87 IRSRSDMNT---FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVN 143
+ +R+D ++ H A GH I + L+ + + D + SPL+ AA ++V
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVK 90
Query: 144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALID--RDPEIVTIKDKKGQTALH-M 200
+L + V +NG T LH AA I L++ +P+ KD TA+H
Sbjct: 91 ALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRA 146
Query: 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
A KG V +IL N +D +GNT +H+A + R + L++
Sbjct: 147 AAKGNLKMV--HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ 242
D + T D+ +TALH A +VE++L + +N++D G + +HIA +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGXDE 87
Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLA 269
IV LL VNA+N T + A
Sbjct: 88 IVKALL-VKGAHVNAVNQNGCTPLHYA 113
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 161 KTALHTAARYGLINIVTALI-DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
+T TAAR ++ L+ DRD + V D+ G+TAL + V G +L+
Sbjct: 46 ETPWWTAARKADEQALSQLLEDRDVDAV---DENGRTAL-LFVAGLGSDKCVRLLAEAGA 101
Query: 220 ILNERDKKGN-TAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKL 272
L+ RD +G TA+H+A RP++V L+ + D+ + + TA++LA ++
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALELAREI 154
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 124 SSNTSPLYSAAVQDHLDVVNTIL-DADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
S +P ++AA + ++ +L D DV V +NG+TAL A G V L +
Sbjct: 43 SEYETPWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEA 99
Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYI--LSADHLILNERDKKGNTAVHIA 235
++ + G TALHMA P VVE + L AD + D++G TA+ +A
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 161 KTALHTAARYGLINIVTALI-DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
+T TAAR ++ L+ DRD + V D+ G+TAL + V G +L+
Sbjct: 45 ETPWWTAARKADEQALSQLLEDRDVDAV---DENGRTAL-LFVAGLGSDKCVRLLAEAGA 100
Query: 220 ILNERDKKGN-TAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKL 272
L+ RD +G TA+H+A RP++V L+ + D+ + + TA++LA ++
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALELAREI 153
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 124 SSNTSPLYSAAVQDHLDVVNTIL-DADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
S +P ++AA + ++ +L D DV V +NG+TAL A G V L +
Sbjct: 42 SEYETPWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEA 98
Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYI--LSADHLILNERDKKGNTAVHIA 235
++ + G TALHMA P VVE + L AD + D++G TA+ +A
Sbjct: 99 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELA 150
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 198 LHMAVK----GQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
LH+AVK P V I + HL + + GNTA+H A +P + LLL ++
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHL--DAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVD 300
V +N ETA+D+A K + E +E L +A A + VD
Sbjct: 233 -VGTVNEAGETALDIARKKHHK----ECEELLEQAQAGTFAFPLHVD 274
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL A+ +N +DK G T +H+A R+ +IV +LL
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 59
Query: 254 DVNAINNQRETAMDLA 269
DVNA + +TA D++
Sbjct: 60 DVNAQDKFGKTAFDIS 75
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
GK L AAR G + V L+ + V KDK G T LH+A + +VE +L A
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 220 ILNERDKKGNTAVHIA 235
+ N +DK G TA I+
Sbjct: 61 V-NAQDKFGKTAFDIS 75
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
K+G T LH AAR G + IV L+ + V +DK G+TA +++ + E + A
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 198 LHMAVK----GQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
LH+AVK P V I + HL + + GNTA+H A +P + LLL ++
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHL--DAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVD 300
V +N ETA+D+A K + E +E L +A A + VD
Sbjct: 252 -VGTVNEAGETALDIARKKHHK----ECEELLEQAQAGTFAFPLHVD 293
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 22/191 (11%)
Query: 42 GSSLVSELMAMQNDTGETALYISA----ANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFH 97
G S E + +QND G+TAL+++A A+ + +++ V + R H
Sbjct: 30 GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG------VLVAERGGHTALH 83
Query: 98 VAAKKGHLGIAKELVSIWPE---------LCKSCDSSNTSPLYSAAVQDHLDVVNTILDA 148
+A + A L+ P L +S D + + AAV + N
Sbjct: 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143
Query: 149 DVSCTRIVRK---NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQ 205
D + +G T LH A + +V L D ++ + G+T LH+AV+ Q
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 206 CPSVVEYILSA 216
SV+E +L A
Sbjct: 204 AASVLELLLKA 214
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 156 VRKNGKTALHTAARYGLINIVTALI--DRDPEIVTIKDKKGQTALHM-AVKGQCPSVVEY 212
V ++G TALH A + + L+ E + +++ GQTALH+ A+ G+ +V +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 213 ILSADHLILNERDKKGNTAVHIATR 237
+ +++ ER G+TA+H+A R
Sbjct: 65 YAAGAGVLVAER--GGHTALHLACR 87
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 22/191 (11%)
Query: 42 GSSLVSELMAMQNDTGETALYISA----ANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFH 97
G S E + +QND G+TAL+++A A+ + +++ V + R H
Sbjct: 30 GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG------VLVAERGGHTALH 83
Query: 98 VAAKKGHLGIAKELVSIWPE---------LCKSCDSSNTSPLYSAAVQDHLDVVNTILDA 148
+A + A L+ P L +S D + + AAV + N
Sbjct: 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143
Query: 149 DVSCTRIVRK---NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQ 205
D + +G T LH A + +V L D ++ + G+T LH+AV+ Q
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 206 CPSVVEYILSA 216
SV+E +L A
Sbjct: 204 AASVLELLLKA 214
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 156 VRKNGKTALHTAARYGLINIVTALI--DRDPEIVTIKDKKGQTALHM-AVKGQCPSVVEY 212
V ++G TALH A + + L+ E + +++ GQTALH+ A+ G+ +V +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 213 ILSADHLILNERDKKGNTAVHIATR 237
+ +++ ER G+TA+H+A R
Sbjct: 65 YAAGAGVLVAER--GGHTALHLACR 87
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL A+ + +DK G+T +H+A R ++V LLL
Sbjct: 7 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGA 63
Query: 254 DVNAINNQRETAMDLA 269
DVNA + +TA D++
Sbjct: 64 DVNAQDKFGKTAFDIS 79
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
KNG T LH AAR G + +V L++ + V +DK G+TA +++
Sbjct: 37 KNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISI 80
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
GK L AAR G + V L+ + V KDK G T LH+A + VV+ +L A
Sbjct: 7 GKKLLE-AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 220 ILNERDKKGNTAVHIA 235
+ N +DK G TA I+
Sbjct: 65 V-NAQDKFGKTAFDIS 79
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADV 150
+ H+AA+ GHL I + L+ ++ + D+ +PL+ AA++ HL++V +L ADV
Sbjct: 48 LTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Query: 151 SCTRIVRKNGKTAL 164
+ K GKTA
Sbjct: 107 NAQ---DKFGKTAF 117
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL A+ +N D+ G T +H+A + +IV +LL Y +
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA- 71
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
DVNA +N T + LA + LEI E L + GA
Sbjct: 72 DVNAEDNFGITPLHLAAIRGH----LEIVEVLLKHGA 104
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVE 211
R R N L AA G + +V + DP + +++G TALH A+ G S+V+
Sbjct: 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDP---SQPNEEGITALHNAICGANYSIVD 71
Query: 212 YILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271
++++A + N D G T +H A C ++ + L + A A
Sbjct: 72 FLITAGANV-NSPDSHGWTPLHCAA-SCNDTVICMALV------------QHGAAIFATT 117
Query: 272 LQYGDSTLEIKEALAEAGAKHARYVGQVDEAMEL 305
L G + E + E A A Y+ V+++M L
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 193 KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTS 252
KG+TALH A + +V+Y++ +++D+ G T + +A ++ R ++V L+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ-QG 336
Query: 253 IDVNAINNQRETAMDLA 269
V A++ TA LA
Sbjct: 337 ASVEAVDATDHTARQLA 353
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
G+ L A GQ V IL A+ + +DK G+T +H+A R ++V LLL
Sbjct: 25 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGA 81
Query: 254 DVNAINNQRETAMDLA 269
DV A + +TA D++
Sbjct: 82 DVXAQDKFGKTAFDIS 97
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
KNG T LH AAR G + +V L++ + V +DK G+TA +++
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISI 98
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
GK L AAR G + V L+ + V KDK G T LH+A + VV+ +L A
Sbjct: 25 GKKLLE-AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 220 ILNERDKKGNTAVHIA 235
+ +DK G TA I+
Sbjct: 83 V-XAQDKFGKTAFDIS 97
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 192 KKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT 251
K G TALH+A V++ ++ A + + N +D G T +H A + + +L+
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE-N 254
Query: 252 SIDVNAINNQRETAMDLADK 271
D+ A+N +TA D+AD+
Sbjct: 255 LCDMEAVNKVGQTAFDVADE 274
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 123 DSSNTSPLYSA-------AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
DS N +PL A A+ ++ + + D D+ G TAL A + + I
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE--------GSTALIWAVKNNRLGI 83
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
L+ + + T KD G+T L ++ S + Y L +N+R+ +G T + +A
Sbjct: 84 AEKLLSKGSNVNT-KDFSGKTPLMWSIIFGY-SEMSYFLLEHGANVNDRNLEGETPLIVA 141
Query: 236 TRKCRPQIVSLLL 248
++ R +IV LL
Sbjct: 142 SKYGRSEIVKKLL 154
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 99 AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIV 156
A K LGIA++L+S + + D S +PL + + + ++ +L+ A+V+ +
Sbjct: 75 AVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL- 132
Query: 157 RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA 197
G+T L A++YG IV L++ +I + +D G TA
Sbjct: 133 --EGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTA 170
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 2/165 (1%)
Query: 130 LYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTI 189
L AA Q V IL V G T L+ A I I ALIDR +I
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 190 KDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
L+ +G+ ++ Y+L LN+ ++ G A+ A K V LLL
Sbjct: 69 NSISDSPYLYAGAQGRT-EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Query: 250 YTSIDVNAINNQRETAMDLADKLQYGDSTLE-IKEALAEAGAKHA 293
D++ N+ TA+ A L+ G+ + I + L E GA +
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 161 KTALH--TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH 218
+TALH A+ + V L+ R V K+K T LH+A + V+E +L
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHG 270
Query: 219 LILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271
+N D G TA+H A Q LLLSY S D + I+ Q TA + ++
Sbjct: 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS-DPSIISLQGFTAAQMGNE 322
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 362 IAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFC---LLNATSLFI 405
+ FL F P Q++M G V A + D V F V C LLNA F+
Sbjct: 114 LKFLGFFVGPIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGFV 160
>pdb|2B81|A Chain A, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|B Chain B, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|C Chain C, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|D Chain D, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
Length = 323
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 202 VKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN----A 257
V+ P V + + HL L+E + T + + R R ++ LL Y SI VN A
Sbjct: 238 VEDYHPDVFKPFIQPXHLDLSEDPNERPTPIRLGYRTGRKALIELLDIYKSIGVNHLFLA 297
Query: 258 INNQRETAMDLADKLQYGDSTLEIKEAL 285
+ + + A ++ D+L G+ L AL
Sbjct: 298 LFDGQRPADEVLDEL--GEEVLPHFPAL 323
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 91 SDMNTFHVAAKKGHLGIAKELVSI-WPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL--- 146
SD + H AA GH + L+S W + D + SPL+ A + HL V +L
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--HVSPLHEACLGGHLSCVKILLKHG 59
Query: 147 ---------------DADVS----CTRIVRKNG---------KTALHTAARYGLINIVTA 178
+A VS C ++ ++G + +H AAR G + V +
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNS 119
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK 238
LI I G T L++A + Q + V+ +L + + + K ++ +H R
Sbjct: 120 LIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADV--NQGKGQDSPLHAVART 176
Query: 239 CRPQIVSLLLSYTSIDVNAINNQRETAMDL 268
++ LL+ + + D A N + + ++L
Sbjct: 177 ASEELACLLMDFGA-DTQAKNAEGKRPVEL 205
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
D N ++ AA + D V +++ VS T I + G TALH A ++G ++ L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA-------DHLILNERDKKGNTAVHIA 235
E+ ++ GQ +H+AV +V ++ +LNE D++ +
Sbjct: 76 G-EVHSL--WHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSH 132
Query: 236 TRKCRPQ 242
+ C+ Q
Sbjct: 133 VKHCKGQ 139
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 91 SDMNTFHVAAKKGHLGIAKELVSI-WPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL--- 146
SD + H AA GH + L+S W + D + SPL+ A + HL V +L
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--HVSPLHEACLGGHLSCVKILLKHG 115
Query: 147 ---------------DADVS----CTRIVRKNG---------KTALHTAARYGLINIVTA 178
+A VS C ++ ++G + +H AAR G + V +
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNS 175
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK 238
LI I G T L++A + Q + V+ +L + + + K ++ +H R
Sbjct: 176 LIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADV--NQGKGQDSPLHAVVRT 232
Query: 239 CRPQIVSLLLSYTSIDVNAINNQRETAMDL 268
++ LL+ + + D A N + + ++L
Sbjct: 233 ASEELACLLMDFGA-DTQAKNAEGKRPVEL 261
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D+S TSP++ AA LD + +++ ADV+ + G +H A R G ++V+ L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNA---LDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 181 DRDPEI-VTIKDKKGQTALHMA 201
PE + +D G T L +A
Sbjct: 130 ---PESDLHHRDASGLTPLELA 148
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D+S TSP++ AA LD + +++ ADV+ + G +H A R G ++V+ L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNA---LDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 181 DRDPEI-VTIKDKKGQTALHMA 201
PE + +D G T L +A
Sbjct: 128 ---PESDLHHRDASGLTPLELA 146
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
H A ++G + + L+ + + + +PL+ AA H D+V +L AD++
Sbjct: 38 LHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA- 95
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMA 201
V ++G LH A +G + L+ + +V+I +K G+ + A
Sbjct: 96 --VNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKA 140
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
+ + +PL+ AA H D+V +L AD++ V ++G LH A +G + L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 181 DRDPEIVTIKDKKGQTALHMA 201
+ +V+I +K G+ + A
Sbjct: 126 -ANGALVSICNKYGEMPVDKA 145
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D+S TSP++ AA LD + +++ ADV+ + G +H A + G +V+ L
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
+ +D +G T L +A++ +V+ +
Sbjct: 128 AESD--LHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
D+S TSP++ AA LD + +++ ADV+ + G +H A + G +V+ L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
+ +D +G T L +A++ +V+ +
Sbjct: 122 AESD--LHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 159 NGKTALHTAARYGLINIVTALIDR--DPEIVT 188
NG T L+ AAR G I+IV AL+D DP I
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGADPFIAN 313
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 126 NTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
N PL+ AA + +V +L + + ++ K G TAL+ A G V + ++
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK-GNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS 215
+ +T+ + AV S+V Y LS
Sbjct: 121 LXFYGKTGWKTSFYHAVXLNDVSIVSYFLS 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,932,647
Number of Sequences: 62578
Number of extensions: 522184
Number of successful extensions: 1879
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 309
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)