Query 009457
Match_columns 534
No_of_seqs 519 out of 3199
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 3.2E-42 1.1E-46 336.8 29.4 264 9-295 3-282 (285)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.8E-41 6.1E-46 353.5 30.8 293 5-308 74-386 (437)
3 1n11_A Ankyrin; clathrin, BAND 100.0 8.8E-41 3E-45 348.2 31.2 275 5-303 41-315 (437)
4 4g8k_A 2-5A-dependent ribonucl 100.0 9.5E-41 3.3E-45 335.9 26.5 257 9-292 23-327 (337)
5 3d9h_A CDNA FLJ77766, highly s 100.0 4.9E-41 1.7E-45 330.0 22.8 270 6-292 10-280 (285)
6 2fo1_E LIN-12 protein; beta-ba 100.0 3.5E-41 1.2E-45 344.0 16.0 262 5-292 88-372 (373)
7 2xai_A ASB-9, ankyrin repeat a 100.0 9.8E-40 3.4E-44 316.4 21.6 240 10-272 2-248 (261)
8 3utm_A Tankyrase-1; tankyrase, 100.0 4.6E-39 1.6E-43 324.3 25.4 276 8-306 21-320 (351)
9 3ljn_A Hypothetical protein; a 100.0 1.3E-39 4.3E-44 331.2 17.0 262 6-291 15-314 (364)
10 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-38 3.7E-43 307.6 20.9 229 5-250 4-245 (253)
11 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-37 3.8E-42 304.6 27.8 236 7-260 35-284 (285)
12 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-37 3.9E-42 314.1 28.6 259 5-291 52-334 (351)
13 1oy3_D Transcription factor in 100.0 1.3E-38 4.4E-43 311.3 20.1 253 4-271 2-267 (282)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-38 5.4E-43 306.4 20.2 230 50-288 3-245 (253)
15 1k1a_A B-cell lymphoma 3-encod 100.0 2.3E-38 7.8E-43 302.2 19.0 233 50-290 2-240 (241)
16 3b7b_A Euchromatic histone-lys 100.0 1.1E-37 3.8E-42 296.9 22.6 216 50-271 4-219 (237)
17 3b7b_A Euchromatic histone-lys 100.0 1.8E-37 6.3E-42 295.4 24.0 227 5-249 5-231 (237)
18 3aji_A 26S proteasome non-ATPa 100.0 2.1E-37 7.4E-42 293.8 22.1 224 57-290 6-229 (231)
19 1k1a_A B-cell lymphoma 3-encod 100.0 6.8E-38 2.3E-42 298.9 18.6 227 5-250 3-238 (241)
20 3aji_A 26S proteasome non-ATPa 100.0 2.9E-37 9.8E-42 292.9 22.2 211 89-307 3-213 (231)
21 2dzn_A Probable 26S proteasome 100.0 4E-37 1.4E-41 291.2 22.6 221 57-287 2-226 (228)
22 2xai_A ASB-9, ankyrin repeat a 100.0 4.2E-37 1.4E-41 297.9 23.1 222 56-292 2-223 (261)
23 3d9h_A CDNA FLJ77766, highly s 100.0 3.4E-37 1.2E-41 302.6 22.3 229 5-256 53-281 (285)
24 3ljn_A Hypothetical protein; a 100.0 2.2E-37 7.7E-42 314.6 19.8 232 50-293 13-271 (364)
25 2dzn_A Probable 26S proteasome 100.0 6.1E-37 2.1E-41 289.9 20.7 222 11-249 2-226 (228)
26 4b93_B Ankyrin repeat domain-c 100.0 3.1E-37 1.1E-41 299.9 14.4 222 6-238 6-228 (269)
27 3eu9_A Huntingtin-interacting 100.0 6.9E-36 2.4E-40 284.3 21.9 232 51-292 3-236 (240)
28 4b93_B Ankyrin repeat domain-c 100.0 7.4E-37 2.5E-41 297.3 14.9 215 52-271 6-227 (269)
29 1oy3_D Transcription factor in 100.0 4.2E-36 1.4E-40 293.4 19.3 251 50-308 2-267 (282)
30 4g8k_A 2-5A-dependent ribonucl 100.0 1.7E-35 5.7E-40 297.5 24.2 234 53-294 21-301 (337)
31 2fo1_E LIN-12 protein; beta-ba 100.0 3.5E-36 1.2E-40 307.0 19.1 227 7-250 120-368 (373)
32 3kea_A K1L; tropism, ANK repea 100.0 6.8E-36 2.3E-40 293.3 20.5 240 19-294 7-249 (285)
33 1s70_B 130 kDa myosin-binding 100.0 2.1E-36 7.2E-41 298.5 16.1 240 6-271 35-274 (299)
34 3eu9_A Huntingtin-interacting 100.0 3.4E-35 1.2E-39 279.6 22.7 231 5-254 3-235 (240)
35 2f8y_A Notch homolog 1, transl 100.0 4.5E-35 1.5E-39 276.2 19.7 218 67-293 1-218 (223)
36 2f8y_A Notch homolog 1, transl 100.0 5.5E-35 1.9E-39 275.6 18.9 215 22-254 2-216 (223)
37 3kea_A K1L; tropism, ANK repea 100.0 6.9E-35 2.4E-39 286.1 16.2 224 5-259 25-251 (285)
38 1s70_B 130 kDa myosin-binding 100.0 3.7E-34 1.3E-38 282.4 16.5 270 16-306 3-272 (299)
39 1ikn_D Protein (I-kappa-B-alph 100.0 7.4E-35 2.5E-39 277.5 10.9 216 52-271 3-228 (236)
40 2rfa_A Transient receptor pote 100.0 4.5E-33 1.5E-37 264.2 21.6 191 56-250 2-219 (232)
41 1ikn_D Protein (I-kappa-B-alph 100.0 3.9E-34 1.3E-38 272.5 11.5 221 4-237 1-228 (236)
42 1sw6_A Regulatory protein SWI6 100.0 4.5E-34 1.5E-38 285.9 11.1 247 6-271 47-325 (327)
43 2rfa_A Transient receptor pote 100.0 1.5E-32 5.2E-37 260.6 20.9 194 10-218 2-221 (232)
44 3hra_A Ankyrin repeat family p 100.0 3.2E-32 1.1E-36 252.3 21.3 194 54-250 2-200 (201)
45 3hra_A Ankyrin repeat family p 100.0 8.2E-32 2.8E-36 249.5 22.5 194 90-289 3-201 (201)
46 2pnn_A Transient receptor pote 100.0 3.2E-32 1.1E-36 265.2 12.3 211 50-264 6-269 (273)
47 2pnn_A Transient receptor pote 100.0 6.8E-32 2.3E-36 262.9 14.4 221 5-232 7-271 (273)
48 2etb_A Transient receptor pote 100.0 1.3E-31 4.4E-36 258.3 15.8 206 10-250 1-243 (256)
49 2etb_A Transient receptor pote 100.0 1.9E-31 6.6E-36 257.1 16.0 130 158-293 88-248 (256)
50 1sw6_A Regulatory protein SWI6 100.0 1.1E-32 3.7E-37 275.9 3.8 259 10-306 22-323 (327)
51 4gpm_A Engineered protein OR26 100.0 3.7E-30 1.3E-34 231.7 18.8 157 95-256 7-163 (169)
52 4gpm_A Engineered protein OR26 100.0 4.2E-30 1.4E-34 231.3 19.1 156 13-185 6-161 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 3.9E-31 1.3E-35 255.5 12.3 198 8-216 2-247 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 8.6E-31 2.9E-35 253.0 11.9 131 156-292 89-251 (260)
55 4hbd_A KN motif and ankyrin re 100.0 2.1E-30 7.2E-35 252.9 14.5 193 57-251 76-273 (276)
56 4hbd_A KN motif and ankyrin re 100.0 2E-29 6.9E-34 245.9 15.3 192 11-217 76-273 (276)
57 3v30_A DNA-binding protein rfx 100.0 6.6E-29 2.3E-33 224.2 16.5 170 92-265 2-171 (172)
58 2rfm_A Putative ankyrin repeat 100.0 1.5E-28 5E-33 226.2 16.5 161 50-215 28-188 (192)
59 3v30_A DNA-binding protein rfx 100.0 2.6E-28 8.7E-33 220.3 15.6 169 58-231 3-171 (172)
60 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.2E-28 1.4E-32 216.5 15.3 154 58-216 6-159 (162)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.9E-28 1.7E-32 216.0 15.6 159 91-254 4-162 (162)
62 2rfm_A Putative ankyrin repeat 100.0 6.4E-28 2.2E-32 221.9 16.7 162 85-250 28-189 (192)
63 3v31_A Ankyrin repeat family A 100.0 7.9E-28 2.7E-32 216.0 16.8 159 10-185 2-160 (167)
64 2aja_A Ankyrin repeat family p 100.0 6.7E-31 2.3E-35 266.3 -3.7 236 8-271 89-358 (376)
65 3v31_A Ankyrin repeat family A 100.0 9E-28 3.1E-32 215.6 16.3 154 92-249 3-156 (167)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.6E-27 8.7E-32 213.3 17.9 157 55-216 12-168 (169)
67 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.7E-27 1.3E-31 212.2 17.5 159 88-250 10-168 (169)
68 2vge_A RELA-associated inhibit 99.9 1.6E-30 5.3E-35 246.5 -5.6 187 53-246 17-206 (229)
69 1awc_B Protein (GA binding pro 99.9 1.1E-26 3.7E-31 205.5 17.8 150 12-179 3-152 (153)
70 3f6q_A Integrin-linked protein 99.9 3.1E-27 1.1E-31 214.7 14.7 164 92-259 5-168 (179)
71 1awc_B Protein (GA binding pro 99.9 1E-26 3.5E-31 205.7 17.0 150 93-247 3-152 (153)
72 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7.6E-27 2.6E-31 207.0 16.2 152 93-249 3-154 (156)
73 1bd8_A P19INK4D CDK4/6 inhibit 99.9 8.9E-27 3E-31 206.5 15.7 154 57-216 2-155 (156)
74 3twr_A Tankyrase-2; ankyrin re 99.9 3.5E-27 1.2E-31 211.3 13.0 158 54-216 5-162 (165)
75 2vge_A RELA-associated inhibit 99.9 2.1E-29 7.1E-34 238.7 -2.1 192 4-214 14-208 (229)
76 3twr_A Tankyrase-2; ankyrin re 99.9 6.4E-27 2.2E-31 209.6 13.9 159 88-250 4-162 (165)
77 3f6q_A Integrin-linked protein 99.9 1.3E-26 4.4E-31 210.7 15.2 159 11-185 5-163 (179)
78 2aja_A Ankyrin repeat family p 99.9 9.1E-29 3.1E-33 250.6 0.5 238 14-290 68-343 (376)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6E-27 2.1E-31 223.4 7.5 179 55-240 3-193 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6E-27 2E-31 223.4 7.1 180 8-206 2-193 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 2.4E-24 8.2E-29 191.1 10.9 145 121-270 7-152 (156)
82 3t8k_A Uncharacterized protein 99.9 8.8E-25 3E-29 199.7 8.0 154 93-250 7-176 (186)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 3.8E-24 1.3E-28 189.8 10.9 141 53-199 8-149 (156)
84 1d9s_A Cyclin-dependent kinase 99.9 6.5E-24 2.2E-28 183.7 11.1 129 51-184 6-135 (136)
85 3t8k_A Uncharacterized protein 99.9 3.7E-24 1.3E-28 195.5 9.1 150 59-215 8-175 (186)
86 1d9s_A Cyclin-dependent kinase 99.9 1.3E-23 4.4E-28 181.8 11.2 126 86-215 6-132 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.7E-22 9.1E-27 170.3 15.3 124 57-184 2-125 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 2.3E-22 7.8E-27 173.9 13.4 122 56-181 13-134 (136)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 2E-22 6.9E-27 174.2 13.0 123 90-215 12-134 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.4E-22 1.8E-26 168.4 15.4 123 91-216 1-123 (126)
91 3ui2_A Signal recognition part 99.9 8.9E-24 3.1E-28 202.0 1.8 169 55-250 13-182 (244)
92 3deo_A Signal recognition part 99.9 3.1E-22 1E-26 182.5 9.6 141 53-215 40-180 (183)
93 3deo_A Signal recognition part 99.9 4.1E-22 1.4E-26 181.6 10.1 140 89-250 41-181 (183)
94 2b0o_E UPLC1; arfgap, structur 99.9 2E-21 7E-26 191.4 15.8 141 92-241 151-299 (301)
95 3ui2_A Signal recognition part 99.9 4E-22 1.4E-26 190.5 9.9 143 52-216 40-182 (244)
96 3c5r_A BARD-1, BRCA1-associate 99.9 6.1E-22 2.1E-26 171.3 8.9 125 88-215 6-130 (137)
97 3c5r_A BARD-1, BRCA1-associate 99.9 4.9E-22 1.7E-26 171.9 7.3 129 52-184 5-133 (137)
98 2b0o_E UPLC1; arfgap, structur 99.8 2.6E-21 8.8E-26 190.6 10.9 138 125-271 150-295 (301)
99 3aaa_C Myotrophin, protein V-1 99.8 4.2E-21 1.4E-25 162.8 9.6 109 9-133 5-113 (123)
100 3ehr_A Osteoclast-stimulating 99.8 2E-21 6.8E-26 182.7 8.4 131 50-184 66-197 (222)
101 3aaa_C Myotrophin, protein V-1 99.8 4E-21 1.4E-25 162.9 9.4 107 92-201 7-113 (123)
102 3ehr_A Osteoclast-stimulating 99.8 4.9E-21 1.7E-25 180.0 8.2 133 124-260 71-204 (222)
103 1dcq_A PYK2-associated protein 99.8 1.6E-19 5.5E-24 175.7 15.3 127 160-292 130-264 (278)
104 1dcq_A PYK2-associated protein 99.8 1.8E-19 6E-24 175.4 13.8 191 53-250 62-260 (278)
105 3jue_A Arfgap with coiled-coil 99.8 2.4E-19 8.1E-24 180.8 11.8 145 124-271 197-346 (368)
106 3jue_A Arfgap with coiled-coil 99.8 6.1E-19 2.1E-23 177.8 12.3 148 88-238 195-347 (368)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.4E-18 4.9E-23 139.3 11.8 90 92-183 2-91 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-18 4.3E-23 183.7 14.0 122 93-217 133-263 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.6E-18 5.3E-23 139.1 11.3 93 56-151 1-93 (93)
110 3lvq_E ARF-GAP with SH3 domain 99.8 1.4E-18 4.9E-23 183.3 13.5 136 126-271 132-276 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 9.8E-19 3.3E-23 146.1 8.8 109 155-266 4-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 2.9E-18 9.9E-23 143.2 9.4 95 89-185 6-100 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 6.6E-16 2.2E-20 127.9 9.3 95 48-145 15-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 1.2E-15 4E-20 126.4 10.0 90 88-179 20-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 68.5 13 0.00045 36.1 8.0 26 8-33 34-59 (351)
116 2klu_A T-cell surface glycopro 66.8 6.4 0.00022 27.5 3.6 42 460-502 7-49 (70)
117 3k49_A MRNA-binding protein PU 52.9 55 0.0019 31.8 9.4 60 8-77 39-98 (369)
118 3gvo_A Pumilio 2, pumilio homo 48.4 38 0.0013 32.7 7.3 26 190-215 213-238 (351)
119 2l2t_A Receptor tyrosine-prote 44.3 27 0.00091 22.5 3.5 29 459-487 8-36 (44)
120 2ks1_B Epidermal growth factor 43.9 22 0.00075 22.9 3.1 28 460-487 10-37 (44)
121 3k49_A MRNA-binding protein PU 33.6 82 0.0028 30.5 7.1 24 225-248 261-284 (369)
122 4ev6_A Magnesium transport pro 30.2 61 0.0021 31.1 5.5 39 430-468 278-319 (339)
123 2lx0_A Membrane fusion protein 28.4 63 0.0021 18.1 2.9 20 468-487 9-28 (32)
124 2k1k_A Ephrin type-A receptor 26.4 60 0.0021 20.0 2.9 24 463-486 13-36 (38)
125 1gp8_A Protein (scaffolding pr 26.0 44 0.0015 20.6 2.1 20 14-33 16-35 (40)
126 4ev6_A Magnesium transport pro 23.8 84 0.0029 30.1 5.1 23 345-367 275-297 (339)
127 2iub_A CORA, divalent cation t 21.8 83 0.0028 30.5 4.6 25 344-368 298-322 (363)
128 2iub_A CORA, divalent cation t 21.5 82 0.0028 30.5 4.5 24 430-453 302-325 (363)
129 3mkq_B Coatomer subunit alpha; 21.5 3.3E+02 0.011 23.3 7.8 133 55-215 6-139 (177)
130 2zy9_A Mg2+ transporter MGTE; 20.7 5E+02 0.017 25.9 10.4 12 280-291 240-251 (473)
131 3rko_J NADH-quinone oxidoreduc 20.6 2.1E+02 0.0071 24.7 6.3 15 394-408 4-18 (184)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-42 Score=336.80 Aligned_cols=264 Identities=23% Similarity=0.314 Sum_probs=241.2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcc-cCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457 9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQ-NDTGETALYISAANNFQDIFSCLLKFCDVEIVKI 87 (534)
Q Consensus 9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~-n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~ 87 (534)
.+|+|+||.|++.|+.++++.|++.+++. +.. +..|.||||+|+..|+.+++++|++.+ .+++.
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~ 67 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANV-------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVL 67 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCc-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcc
Confidence 35789999999999999999999998763 333 678999999999999999999999987 55777
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc----------c
Q 009457 88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIV----------R 157 (534)
Q Consensus 88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~----------d 157 (534)
.+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+.+. +.. +
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~ 145 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLR 145 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhc
Confidence 8899999999999999999999999999988 678999999999999999999999999998874 333 7
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHhc-CCccceecCCCCchHHHHHHhCCC----HHHHHHhHhcCccccccccCCCChHH
Q 009457 158 KNGKTALHTAARYGLINIVTALIDR-DPEIVTIKDKKGQTALHMAVKGQC----PSVVEYILSADHLILNERDKKGNTAV 232 (534)
Q Consensus 158 ~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~in~~d~~g~T~L 232 (534)
..|.||||.|+..|+.+++++|++. +.+ ++..|..|+||||.|+..++ .+++++|++. +.+++.+|..|+|||
T Consensus 146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 146 KGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPL 223 (285)
T ss_dssp CCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHH
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHH
Confidence 8899999999999999999999998 666 68899999999999999999 8999999996 566799999999999
Q ss_pred HHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccc
Q 009457 233 HIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARY 295 (534)
Q Consensus 233 h~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~ 295 (534)
|+|+..|+.+++++|++..|++++.+|..|+||||+|+. .++. +++++|+++|++....
T Consensus 224 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~--~~~~--~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE--LKLK--KIAELLCKRGASTDCG 282 (285)
T ss_dssp HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHHHHHSSCSCCS
T ss_pred HHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHH--cCcH--HHHHHHHHcCCCCCcc
Confidence 999999999999999997799999999999999999999 7776 9999999999987543
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-41 Score=353.47 Aligned_cols=293 Identities=21% Similarity=0.279 Sum_probs=241.8
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCC--CCcchH------------HHHHh------cccCCCCcHHHHH
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAP--DGSSLV------------SELMA------MQNDTGETALYIS 64 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~--~~~~~~------------~~ll~------~~n~~g~T~L~~A 64 (534)
+..+..|.||||+|++.|+.++++.|++.+.+.+.. .+.+++ ..++. ..+..|.||||+|
T Consensus 74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 153 (437)
T 1n11_A 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153 (437)
T ss_dssp SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence 346788999999999999999999999998765432 233332 12222 2356788888888
Q ss_pred HHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHH
Q 009457 65 AANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144 (534)
Q Consensus 65 a~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~ 144 (534)
+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++++++. +..+..|.||||+|+..|+.+++++
T Consensus 154 ~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~ 230 (437)
T 1n11_A 154 AKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARS 230 (437)
T ss_dssp HHTTCHHHHHHHHHTT--CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 8888888888888876 456677888888999998888889999888888876 5667788899999999999999999
Q ss_pred HHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccc
Q 009457 145 ILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNER 224 (534)
Q Consensus 145 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~ 224 (534)
|++.+.+ .+..+..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|++.|+.+++++|+++ +.+++.+
T Consensus 231 Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~ 307 (437)
T 1n11_A 231 LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDAT 307 (437)
T ss_dssp HHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC
T ss_pred HHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CccCCCC
Confidence 9988877 567788899999999999999999999998888 478888899999999999999999999986 5566888
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHH
Q 009457 225 DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAME 304 (534)
Q Consensus 225 d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~ 304 (534)
|..|+||||+|+..|+.+++++|+++ |+++|.+|..|.||||+|+. .++. +++++|++.|+++...+..+.++++
T Consensus 308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~--~g~~--~iv~~Ll~~ga~~~~~~~~g~t~l~ 382 (437)
T 1n11_A 308 TRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQ--QGHT--DIVTLLLKNGASPNEVSSDGTTPLA 382 (437)
T ss_dssp CSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHH--CChH--HHHHHHHHCcCCCCCCCCCCCCHHH
Confidence 99999999999999999999999984 88999999999999999988 6766 8999999999988877777777777
Q ss_pred Hhhh
Q 009457 305 LKRT 308 (534)
Q Consensus 305 ~~~~ 308 (534)
+...
T Consensus 383 ~A~~ 386 (437)
T 1n11_A 383 IAKR 386 (437)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 3
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.8e-41 Score=348.24 Aligned_cols=275 Identities=22% Similarity=0.260 Sum_probs=147.9
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI 84 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~ 84 (534)
+..+..|.||||.|++.|+.+++++|++.+.+. +.++..|.||||+|+..|+.++|++|++++ .+
T Consensus 41 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~ 105 (437)
T 1n11_A 41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-------------NAKAKDDQTPLHCAARIGHTNMVKLLLENN--AN 105 (437)
T ss_dssp CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-------------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHT--CC
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-------------CCCCCCCCCHHHHHHHCCCHHHHHHHHhCC--CC
Confidence 346788999999999999999999999998764 344555556666666666666666666554 33
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL 164 (534)
Q Consensus 85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 164 (534)
++..+..|.||||+|+..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|||
T Consensus 106 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L 183 (437)
T 1n11_A 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPL 183 (437)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSCCCHH
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHH
Confidence 4444555555555555555555555555555444 33444555555555555555555555555544 334444555555
Q ss_pred HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV 244 (534)
Q Consensus 165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv 244 (534)
|+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++. +..++..|..|.||||+|+..|+.+++
T Consensus 184 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v 261 (437)
T 1n11_A 184 HVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQY-GGSANAESVQGVTPLHLAAQEGHAEMV 261 (437)
T ss_dssp HHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 555555555555555555444 234444444555555544444444444443 222344444444444444444444444
Q ss_pred HHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHH
Q 009457 245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAM 303 (534)
Q Consensus 245 ~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~ 303 (534)
++|++. +++++..|..|.||||+|+. .++. +++++|++.|++.......+.+++
T Consensus 262 ~~Ll~~-~~~~~~~~~~g~t~L~~A~~--~~~~--~~~~~Ll~~g~~~~~~~~~g~t~L 315 (437)
T 1n11_A 262 ALLLSK-QANGNLGNKSGLTPLHLVAQ--EGHV--PVADVLIKHGVMVDATTRMGYTPL 315 (437)
T ss_dssp HHHHTT-TCCTTCCCTTCCCHHHHHHH--HTCH--HHHHHHHHHTCCTTCCCSSCCCHH
T ss_pred HHHHhc-CCCCCCCCCCCCCHHHHHHH--cCCH--HHHHHHHhCCccCCCCCCCCCCHH
Confidence 444442 44444444444444444444 3333 444444444444433333333333
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=9.5e-41 Score=335.87 Aligned_cols=257 Identities=22% Similarity=0.289 Sum_probs=150.5
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhccc-CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457 9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQN-DTGETALYISAANNFQDIFSCLLKFCDVEIVKI 87 (534)
Q Consensus 9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n-~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~ 87 (534)
..|+|+||.||+.|+.++|+.||+++.+. +.++ ..|.||||+|+..|+.++|++|++++ .+++.
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadv-------------n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g--a~~~~ 87 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANV-------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVL 87 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCT-------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCC-------------CccCCCCCcCHHHHHHHcCCHHHHHHHHHcC--Cchhh
Confidence 34789999999999999999999999873 4444 45999999999999999999999987 33333
Q ss_pred c---------------------------------CCCCCcHHHHHHHcCCHHHHHHHHhhCcccc---------ccCCCC
Q 009457 88 R---------------------------------SRSDMNTFHVAAKKGHLGIAKELVSIWPELC---------KSCDSS 125 (534)
Q Consensus 88 ~---------------------------------~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~---------~~~d~~ 125 (534)
. +..|.||||+|+..|+.+++++|+++++++. ...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~ 167 (337)
T 4g8k_A 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167 (337)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTC
T ss_pred hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCC
Confidence 4 4445555555555555555555555544431 112334
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCC----HHHHHHHHhcCCccceecCCCCchHHHH
Q 009457 126 NTSPLYSAAVQDHLDVVNTILDA-DVSCTRIVRKNGKTALHTAARYGL----INIVTALIDRDPEIVTIKDKKGQTALHM 200 (534)
Q Consensus 126 g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~ 200 (534)
|.||||+|+..|+.+++++|++. +++ .+.+|..|.||+|.++..++ .+++++|++++++ ++.+|..|+||||+
T Consensus 168 g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~ 245 (337)
T 4g8k_A 168 GATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLIL 245 (337)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred CCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHH
Confidence 55555555555555555555532 333 34455555555555443322 2344555555555 34555555555555
Q ss_pred HHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHH
Q 009457 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLE 280 (534)
Q Consensus 201 A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~ 280 (534)
|+..|+.+++++|++..+.++|.+|.+|+||||+|+..|+.+++++|+++ |+++|. .+|||+|+. .++. +
T Consensus 246 a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAd~n~-----~~~L~~A~~--~~~~--~ 315 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDC-----GDLVMTARR--NYDH--S 315 (337)
T ss_dssp HHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT-SCSSTT-----CCHHHHHHH--TTCH--H
T ss_pred HHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCC-----CCHHHHHHH--cCCH--H
Confidence 55555555555555544444555555555555555555555555555552 454432 235555555 4443 5
Q ss_pred HHHHHHHcCCcc
Q 009457 281 IKEALAEAGAKH 292 (534)
Q Consensus 281 i~~~L~~~ga~~ 292 (534)
++++|+++||++
T Consensus 316 iv~~Ll~~GA~~ 327 (337)
T 4g8k_A 316 LVKVLLSHGAKE 327 (337)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHCcCCC
Confidence 555555555544
No 5
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.9e-41 Score=329.96 Aligned_cols=270 Identities=21% Similarity=0.249 Sum_probs=207.5
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457 6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV 85 (534)
Q Consensus 6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~ 85 (534)
.-...|.|+||+|++.|+.+.+..++...+.... +...+..-+...+..|.||||+|+..|+.+++++|++.+ .++
T Consensus 10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~ 85 (285)
T 3d9h_A 10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFP--GIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAV 85 (285)
T ss_dssp --------------------------------CC--SEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCS
T ss_pred ccchHHHHHHHHHhhcCCCCCcccCCCCcccccc--chhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCC
Confidence 3456799999999999999888888777654210 000011124668899999999999999999999999987 557
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHH
Q 009457 86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH 165 (534)
Q Consensus 86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 165 (534)
+..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++.. .+.+|.||||
T Consensus 86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~ 162 (285)
T 3d9h_A 86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIH 162 (285)
T ss_dssp CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHH
T ss_pred CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHH
Confidence 888999999999999999999999999999988 7789999999999999999999999999998843 3556999999
Q ss_pred HHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHH
Q 009457 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS 245 (534)
Q Consensus 166 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~ 245 (534)
+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++ .|..|+||||+|+..++.++++
T Consensus 163 ~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~g~t~L~~A~~~~~~~~v~ 239 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVVRTASEELAC 239 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999998 588999999999999999999999999997 45556 4899999999999999999999
Q ss_pred HHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHc-CCcc
Q 009457 246 LLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEA-GAKH 292 (534)
Q Consensus 246 ~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~-ga~~ 292 (534)
+|+++ |++++.+|.+|+||||+|+. +. +++++|++. |++.
T Consensus 240 ~Ll~~-gad~~~~d~~g~t~l~~A~~----~~--~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 240 LLMDF-GADTQAKNAEGKRPVELVPP----ES--PLAQLFLEREGASL 280 (285)
T ss_dssp HHHHT-TCCTTCCCTTSCCGGGGSCT----TS--HHHHHHHHHC----
T ss_pred HHHHC-CCCCCCcCCCCCCHHHHhcC----cc--HHHHHHHHhhccCC
Confidence 99995 99999999999999999974 34 899999987 6654
No 6
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-41 Score=343.95 Aligned_cols=262 Identities=17% Similarity=0.206 Sum_probs=228.1
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhccc-CCCCcHHHHHHHcCCHHHHHHHH------
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQN-DTGETALYISAANNFQDIFSCLL------ 77 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n-~~g~T~L~~Aa~~g~~~iv~~Ll------ 77 (534)
..++..|.||||.|+..|+ ++++.|+... ++..| ..|.||||+|+..|+.+++++|+
T Consensus 88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~---------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ 151 (373)
T 2fo1_E 88 TEPEPESPIKLHTEAAGSY-AITEPITRES---------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 151 (373)
T ss_dssp ------CCCHHHHHHHSSS-CCCSCCSTTT---------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHH
T ss_pred cCCCCCCccHHHHHhcCCc-hHHHHhcccc---------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4578899999999999654 7777665432 34566 78999999999999999888887
Q ss_pred --hcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC---CCc
Q 009457 78 --KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDAD---VSC 152 (534)
Q Consensus 78 --~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~---~~~ 152 (534)
+.+ .+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+ .+
T Consensus 152 ll~~g--a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~- 227 (373)
T 2fo1_E 152 CIAAG--ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD- 227 (373)
T ss_dssp HHHTC--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT-
T ss_pred HHhcC--CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC-
Confidence 555 567888999999999999999999999999999998 678999999999999999999999999987 44
Q ss_pred ccccccCCCcHHHHHHHcC---CHHHHHHHHhcCCcccee--------cCCCCchHHHHHHhCCCHHHHHHhHhcCcccc
Q 009457 153 TRIVRKNGKTALHTAARYG---LINIVTALIDRDPEIVTI--------KDKKGQTALHMAVKGQCPSVVEYILSADHLIL 221 (534)
Q Consensus 153 ~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~~--------~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~i 221 (534)
.+..|.+|.||||+|+..| +.+++++|++.++++ +. .|..|+||||+|+..|+.+++++|++.++.++
T Consensus 228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 306 (373)
T 2fo1_E 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306 (373)
T ss_dssp TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence 5678999999999999998 899999999999884 43 56789999999999999999999999877889
Q ss_pred ccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457 222 NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH 292 (534)
Q Consensus 222 n~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~ 292 (534)
+.+|.+|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+. .++. +++++|++.|++.
T Consensus 307 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~--~g~~--~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 307 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQA--NNHH--NIVDIFDRCRPER 372 (373)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHH--TTCH--HHHHHHHTTC---
T ss_pred cCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHH--cCCH--HHHHHHHhcCccc
Confidence 99999999999999999999999999995 99999999999999999999 7777 9999999998753
No 7
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9.8e-40 Score=316.44 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=215.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccC
Q 009457 10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRS 89 (534)
Q Consensus 10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 89 (534)
+|.||||.|++.|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+++..+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~ 66 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-------------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVT 66 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCC
Confidence 689999999999999999999998765 4567889999999999999999999999987 6678889
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457 90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR 169 (534)
Q Consensus 90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 169 (534)
..|.||||+|+..|+.+++++|+++++++. .+..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+.
T Consensus 67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 143 (261)
T 2xai_A 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACE 143 (261)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999873 356699999999999999999999999988 67789999999999999
Q ss_pred cCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhc
Q 009457 170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249 (534)
Q Consensus 170 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 249 (534)
.|+.+++++|++.++++ + .+..|+||||+|+..|+.+++++|++. +.+++.+|.+|+||||+|+.++ +++++|++
T Consensus 144 ~~~~~~v~~Ll~~g~~~-~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~ 218 (261)
T 2xai_A 144 NQQRACVKKLLESGADV-N-QGKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEGKRPVELVPPES--PLAQLFLE 218 (261)
T ss_dssp TTCHHHHHHHHHHTCCT-T-CCBTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCTTC--THHHHHHH
T ss_pred hCCHHHHHHHHHcCCCC-C-CCCCCCChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCChhhhccccc--cHHHHHHh
Confidence 99999999999999985 5 488999999999999999999999997 6677999999999999999654 58888888
Q ss_pred cCC-------ccccccccCCCCHHHHHHHc
Q 009457 250 YTS-------IDVNAINNQRETAMDLADKL 272 (534)
Q Consensus 250 ~~g-------~~~~~~n~~g~t~L~lA~~~ 272 (534)
..+ ++++.+|..|+||+|++.+.
T Consensus 219 ~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~ 248 (261)
T 2xai_A 219 REGPPSLMQLCRLRIRKCFGIQQHHKITKL 248 (261)
T ss_dssp C-CCCCHHHHHHHHHHTTSCTTCGGGGGGS
T ss_pred ccCCccHHHHHHHHHHHHhchhccccCccc
Confidence 633 35678899999999999883
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.6e-39 Score=324.31 Aligned_cols=276 Identities=22% Similarity=0.257 Sum_probs=240.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457 8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI 87 (534)
Q Consensus 8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~ 87 (534)
+..+.|+||.|++.|+.+.++.++...... ++..|..|.||||+|+..|+.++|++|++.+ .+++.
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~ 86 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLTPLNVN------------CHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHA 86 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCCTTTTT------------CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred ccccchhHHHHHHcCCHHHHHHHHHhcCCC------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCc
Confidence 456789999999999999999999864321 4567889999999999999999999999987 56788
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457 88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167 (534)
Q Consensus 88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 167 (534)
.+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..+..|.+|+|+|
T Consensus 87 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a 164 (351)
T 3utm_A 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMA 164 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHC
T ss_pred cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHH
Confidence 8999999999999999999999999999988 67899999999999999999999999999988 667888899887764
Q ss_pred ---------------------HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhC---CCHHHHHHhHhcCcccccc
Q 009457 168 ---------------------ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG---QCPSVVEYILSADHLILNE 223 (534)
Q Consensus 168 ---------------------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~in~ 223 (534)
+..++.+.++.++..... ....+..|.||||+|+.. +..+++++|++. +.+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~ 242 (351)
T 3utm_A 165 PTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNE 242 (351)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTC
T ss_pred hhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCC
Confidence 556777777777776554 345678899999999998 557899999986 566789
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHH
Q 009457 224 RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAM 303 (534)
Q Consensus 224 ~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~ 303 (534)
+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+. .++. +++++|++.|+++...+..+.++.
T Consensus 243 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~--~~~~--~~v~~Ll~~gad~~~~~~~g~tal 317 (351)
T 3utm_A 243 KNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAAL--AGHL--QTCRLLLSYGSDPSIISLQGFTAA 317 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH--HTCH--HHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH--cCcH--HHHHHHHHcCCCCCCcCCCCCChh
Confidence 999999999999999999999999994 89999999999999999998 6666 999999999999888777777777
Q ss_pred HHh
Q 009457 304 ELK 306 (534)
Q Consensus 304 ~~~ 306 (534)
++.
T Consensus 318 ~~a 320 (351)
T 3utm_A 318 QMG 320 (351)
T ss_dssp HHS
T ss_pred hhh
Confidence 664
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.3e-39 Score=331.25 Aligned_cols=262 Identities=15% Similarity=0.099 Sum_probs=224.6
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457 6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV 85 (534)
Q Consensus 6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~ 85 (534)
..|..|.||||+||+.|+.++|+.|++.+.+ ++..|..|.||||+|+..|+.++|++|++.+.
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---- 77 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVS-------------PTIQNRFGCTALHLACKFGCVDTAKYLASVGE---- 77 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-------------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----
Confidence 4577899999999999999999999999876 45788999999999999999999999999874
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHhh----Cccccc----------------cCCCCCCcHHHHHHHcC--CHHHHH
Q 009457 86 KIRSRSDMNTFHVAAKKGHLGIAKELVSI----WPELCK----------------SCDSSNTSPLYSAAVQD--HLDVVN 143 (534)
Q Consensus 86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~----~~~l~~----------------~~d~~g~tpLh~Aa~~g--~~~~v~ 143 (534)
...+..|.||||+|+..|+.+++++|++. +.+... ..|..|.||||+|+..| +.++++
T Consensus 78 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~ 157 (364)
T 3ljn_A 78 VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157 (364)
T ss_dssp CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH
T ss_pred CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH
Confidence 33456899999999999999999999998 554421 16778999999999999 999999
Q ss_pred HHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCcc----ceecCCCCchHHHHHHhCCCHHHHHHhHhcCcc
Q 009457 144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI----VTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219 (534)
Q Consensus 144 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 219 (534)
+|++.+++ .+..|..|.||||+|+..|+.+++++|++.+++. ++..|..|+||||+|+..|+.+++++|+++ +.
T Consensus 158 ~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga 235 (364)
T 3ljn_A 158 ILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GI 235 (364)
T ss_dssp HHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TC
T ss_pred HHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CC
Confidence 99999988 6788999999999999999999999999998872 478899999999999999999999999996 56
Q ss_pred ccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccc------------cccCCCCHHHHHHHccCCCCHHHHHHHHHH
Q 009457 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNA------------INNQRETAMDLADKLQYGDSTLEIKEALAE 287 (534)
Q Consensus 220 ~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~------------~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~ 287 (534)
+++.+|..|.||||+|+..|+.+++++|+++ |.+++. .+..|.||++.|+. .++. +.+..|+.
T Consensus 236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~--~~~~--~~v~~ll~ 310 (364)
T 3ljn_A 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA--DPSK--QEVLQLLQ 310 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSC--CHHH--HHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhh--ccCH--HHHHHHHH
Confidence 6799999999999999999999999999996 555432 56678888888876 3333 44444554
Q ss_pred cCCc
Q 009457 288 AGAK 291 (534)
Q Consensus 288 ~ga~ 291 (534)
.+++
T Consensus 311 ~~~~ 314 (364)
T 3ljn_A 311 EKLD 314 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 10
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-38 Score=307.59 Aligned_cols=229 Identities=19% Similarity=0.184 Sum_probs=135.4
Q ss_pred ccCCCCCChHHHHHHHcC-------------CHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHH
Q 009457 5 KSFRFITHQSFFSAVRSG-------------DLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQD 71 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G-------------~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~ 71 (534)
+..|.+|.||||+|+..| +.++++.|++.+++. ....|..|.||||+|+..|+.+
T Consensus 4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~------------~~~~d~~g~t~L~~A~~~g~~~ 71 (253)
T 1yyh_A 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL------------HNQTDRTGETALHLAARYSRSD 71 (253)
T ss_dssp ------------------------------------------------------------CCCTTSCCHHHHHHHTTCHH
T ss_pred CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc------------ccccCCCCCcHHHHHHHcCCHH
Confidence 457889999999999988 677777777766542 2334667777777777777777
Q ss_pred HHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 009457 72 IFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS 151 (534)
Q Consensus 72 iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 151 (534)
+|++|++.+ .+++..+..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++
T Consensus 72 ~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 149 (253)
T 1yyh_A 72 AAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149 (253)
T ss_dssp HHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC
T ss_pred HHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC
Confidence 777777765 445666677777777777777777777777776644466667777777777777777777777777666
Q ss_pred cccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChH
Q 009457 152 CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA 231 (534)
Q Consensus 152 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~ 231 (534)
.+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++ +.+++.+|..|+||
T Consensus 150 -~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tp 226 (253)
T 1yyh_A 150 -VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLP 226 (253)
T ss_dssp -TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCH
T ss_pred -CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCH
Confidence 455667777777777777777777777777766 466677777777777777777777777765 34456677777777
Q ss_pred HHHHHHcCCHHHHHHHhcc
Q 009457 232 VHIATRKCRPQIVSLLLSY 250 (534)
Q Consensus 232 Lh~A~~~~~~~iv~~Ll~~ 250 (534)
||+|+.+|+.+++++|...
T Consensus 227 l~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 227 RDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp HHHHHHTTCHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 7777777777777777664
No 11
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-37 Score=304.57 Aligned_cols=236 Identities=19% Similarity=0.231 Sum_probs=216.9
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhh
Q 009457 7 FRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVK 86 (534)
Q Consensus 7 ~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~ 86 (534)
.+..|.||||+|++.|+.++++.|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+ .+++
T Consensus 35 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~ 99 (285)
T 1wdy_A 35 EEEGGWTPLHNAVQMSREDIVELLLRHGAD-------------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVN 99 (285)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTT
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCC
Confidence 377899999999999999999999999876 3467889999999999999999999999987 5577
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccC---------CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccc
Q 009457 87 IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSC---------DSSNTSPLYSAAVQDHLDVVNTILDA-DVSCTRIV 156 (534)
Q Consensus 87 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~---------d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~ 156 (534)
..+..|.||||+|+..|+.+++++|+++++++.... +..|.||||+|+..|+.+++++|++. +.+ .+..
T Consensus 100 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~ 178 (285)
T 1wdy_A 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNAC 178 (285)
T ss_dssp CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCC
T ss_pred ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCcc
Confidence 889999999999999999999999999998873221 78899999999999999999999997 666 6788
Q ss_pred ccCCCcHHHHHHHcCC----HHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHH
Q 009457 157 RKNGKTALHTAARYGL----INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAV 232 (534)
Q Consensus 157 d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~L 232 (534)
|..|.||||+|+..++ .+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++..+.+++.+|..|+|||
T Consensus 179 ~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l 257 (285)
T 1wdy_A 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257 (285)
T ss_dssp CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH
T ss_pred CCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHH
Confidence 9999999999999999 9999999999998 5889999999999999999999999999976888899999999999
Q ss_pred HHHHHcCCHHHHHHHhccCCcccccccc
Q 009457 233 HIATRKCRPQIVSLLLSYTSIDVNAINN 260 (534)
Q Consensus 233 h~A~~~~~~~iv~~Ll~~~g~~~~~~n~ 260 (534)
|+|+..++.+++++|+++ |++++.+|.
T Consensus 258 ~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~ 284 (285)
T 1wdy_A 258 LLAVELKLKKIAELLCKR-GASTDCGDL 284 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred HHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence 999999999999999995 999998773
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-37 Score=314.11 Aligned_cols=259 Identities=21% Similarity=0.210 Sum_probs=229.1
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI 84 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~ 84 (534)
+..|..|.||||+|++.|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++++ .+
T Consensus 52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~ 116 (351)
T 3utm_A 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHG--AC 116 (351)
T ss_dssp CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CC
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CC
Confidence 35678899999999999999999999999876 4567889999999999999999999999987 56
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH---------------------HHcCCHHHHH
Q 009457 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA---------------------AVQDHLDVVN 143 (534)
Q Consensus 85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A---------------------a~~g~~~~v~ 143 (534)
++..+..|.||||+|+..|+.+++++|++++++. +..+..|.||+++| +..++.+.+.
T Consensus 117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (351)
T 3utm_A 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVK 195 (351)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHH
Confidence 7788999999999999999999999999999988 67789999998775 4556666677
Q ss_pred HHHhcCCCcccccccCCCcHHHHHHHc---CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccc
Q 009457 144 TILDADVSCTRIVRKNGKTALHTAARY---GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI 220 (534)
Q Consensus 144 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 220 (534)
.++..... ....+..|.||||+|+.. +..+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++. +.+
T Consensus 196 ~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~ 272 (351)
T 3utm_A 196 KTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAK 272 (351)
T ss_dssp HHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred HHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence 77766544 344678899999999999 558999999999998 588999999999999999999999999996 567
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc
Q 009457 221 LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291 (534)
Q Consensus 221 in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~ 291 (534)
+|.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.||+|+|.. ++.++|.+.+..
T Consensus 273 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~~g~tal~~a~~--------~~~~~l~~~~~~ 334 (351)
T 3utm_A 273 MNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMGNE--------AVQQILSESTPM 334 (351)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHSCH--------HHHHHHHHC---
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCChhhhhhH--------HHHHHHHhcccc
Confidence 799999999999999999999999999995 99999999999999999976 888888877654
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.3e-38 Score=311.25 Aligned_cols=253 Identities=19% Similarity=0.140 Sum_probs=192.0
Q ss_pred cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh
Q 009457 4 LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE 83 (534)
Q Consensus 4 ~~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~ 83 (534)
....|.+|.||||+|++.|+.++|+.|++.+.+. ..++.+|..|.||||+|+..|+.++|++|++++ .
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a 69 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH----------EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--A 69 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS----------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--C
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc----------ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--C
Confidence 4568999999999999999999999999988752 236788999999999999999999999999987 5
Q ss_pred hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcccc------------ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 009457 84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELC------------KSCDSSNTSPLYSAAVQDHLDVVNTILDADVS 151 (534)
Q Consensus 84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~------------~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 151 (534)
+++..+..|.||||+|+..|+.+++++|++++++.. ......+.++++.++..+.......++.....
T Consensus 70 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (282)
T 1oy3_D 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149 (282)
T ss_dssp CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred CCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhh
Confidence 677889999999999999999999999999887632 12233567778777776654444433332222
Q ss_pred cccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCC-CCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCCh
Q 009457 152 CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDK-KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNT 230 (534)
Q Consensus 152 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T 230 (534)
..+..+..|.||||+|+..|+.+++++|++.++++ +..+. .|+||||+|+..|+.+++++|+++ +.+++.+|..|+|
T Consensus 150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t 227 (282)
T 1oy3_D 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRT 227 (282)
T ss_dssp GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCC
Confidence 35678899999999999999999999999999994 66664 599999999999999999999997 6678999999999
Q ss_pred HHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457 231 AVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 231 ~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~ 271 (534)
|||+|+..++.+++++|+++ |++++.+|.+|.||+++|..
T Consensus 228 pL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 228 PLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp HHHHHHTSSCHHHHHHHHHT-TCCCCCCC------------
T ss_pred HHHHHHHcCCcHHHHHHHHc-CCCcCcCCCcccccccccCC
Confidence 99999999999999999995 99999999999999999987
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-38 Score=306.44 Aligned_cols=230 Identities=19% Similarity=0.234 Sum_probs=181.9
Q ss_pred HhcccCCCCcHHHHHHHcC-------------CHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCc
Q 009457 50 MAMQNDTGETALYISAANN-------------FQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116 (534)
Q Consensus 50 l~~~n~~g~T~L~~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~ 116 (534)
++.+|.+|.||||+|+..| +.+++++|++.+. ......+..|.||||+|+..|+.+++++|+++++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 5678899999999999987 8999999999863 2234468899999999999999999999999999
Q ss_pred cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCch
Q 009457 117 ELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT 196 (534)
Q Consensus 117 ~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t 196 (534)
++ +..|..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+|
T Consensus 82 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t 159 (253)
T 1yyh_A 82 DA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKS 159 (253)
T ss_dssp CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCB
T ss_pred CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCC
Confidence 88 678999999999999999999999999999866788999999999999999999999999999998 5889999999
Q ss_pred HHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCC
Q 009457 197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD 276 (534)
Q Consensus 197 ~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~ 276 (534)
|||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||+|+|+. .++
T Consensus 160 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~--~g~ 235 (253)
T 1yyh_A 160 ALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQE--RMH 235 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH--TTC
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHH--cCC
Confidence 99999999999999999996 566799999999999999999999999999995 99999999999999999999 777
Q ss_pred CHHHHHHHHHHc
Q 009457 277 STLEIKEALAEA 288 (534)
Q Consensus 277 ~~~~i~~~L~~~ 288 (534)
. +++++|...
T Consensus 236 ~--~i~~~l~~~ 245 (253)
T 1yyh_A 236 H--DIVRLLDLE 245 (253)
T ss_dssp H--HHHHHHHC-
T ss_pred H--HHHHHHHHH
Confidence 7 999988754
No 15
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.3e-38 Score=302.23 Aligned_cols=233 Identities=20% Similarity=0.214 Sum_probs=201.5
Q ss_pred HhcccCCCCcHHHHHHHcCCHHHHHHHHhcC--ChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCC
Q 009457 50 MAMQNDTGETALYISAANNFQDIFSCLLKFC--DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNT 127 (534)
Q Consensus 50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~ 127 (534)
++.+|.+|.||||+|+..|+.+++++|++.. ...+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence 4678999999999999999999999999720 11456778899999999999999999999999999988 67799999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCC---cccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecC-CCCchHHHHHHh
Q 009457 128 SPLYSAAVQDHLDVVNTILDADVS---CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKD-KKGQTALHMAVK 203 (534)
Q Consensus 128 tpLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~ 203 (534)
||||+|+..|+.+++++|++.++. ..+..+..|.||||+|+..|+.+++++|++.+++. +..+ ..|.||||+|+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHH
Confidence 999999999999999999998872 25678899999999999999999999999999984 6666 889999999999
Q ss_pred CCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHH
Q 009457 204 GQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKE 283 (534)
Q Consensus 204 ~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~ 283 (534)
.|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||+|+|+. .++. ++++
T Consensus 160 ~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~--~~~~--~i~~ 233 (241)
T 1k1a_A 160 NNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARS--RRVI--DILR 233 (241)
T ss_dssp TTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSS--HHHH--HHHT
T ss_pred cCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHh--cCcH--HHHh
Confidence 9999999999997 566799999999999999999999999999994 99999999999999999987 4444 7777
Q ss_pred HHHHcCC
Q 009457 284 ALAEAGA 290 (534)
Q Consensus 284 ~L~~~ga 290 (534)
.|.+.++
T Consensus 234 ~l~~~~a 240 (241)
T 1k1a_A 234 GKATRPA 240 (241)
T ss_dssp C------
T ss_pred hhccCCC
Confidence 7766553
No 16
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.1e-37 Score=296.94 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=202.5
Q ss_pred HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcH
Q 009457 50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP 129 (534)
Q Consensus 50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp 129 (534)
++..|..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 80 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTC 80 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcH
Confidence 3567889999999999999999999999987 557778899999999999999999999999999887 6778999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHH
Q 009457 130 LYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSV 209 (534)
Q Consensus 130 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i 209 (534)
||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.++
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence 99999999999999999998655778899999999999999999999999999998 58899999999999999999999
Q ss_pred HHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457 210 VEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 210 v~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~ 271 (534)
+++|++. +.+++.+|..|.||||+|+..++.+++++|+++ |++++.+|.+|+||||+|+.
T Consensus 160 ~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 160 AEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASL 219 (237)
T ss_dssp HHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCT
T ss_pred HHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHH
Confidence 9999996 566799999999999999999999999999995 99999999999999999987
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.8e-37 Score=295.44 Aligned_cols=227 Identities=20% Similarity=0.255 Sum_probs=208.4
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI 84 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~ 84 (534)
+..+.+|.||||.|++.|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+ .+
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~ 69 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG--AL 69 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CC
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhCC--CC
Confidence 45788999999999999999999999999876 3567789999999999999999999999987 55
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL 164 (534)
Q Consensus 85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 164 (534)
++..+..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+.++..|.|||
T Consensus 70 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L 148 (237)
T 3b7b_A 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICL 148 (237)
T ss_dssp CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHH
Confidence 6778899999999999999999999999999655578899999999999999999999999999988 677899999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV 244 (534)
Q Consensus 165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv 244 (534)
|+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+.+++...+
T Consensus 149 ~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~~ 226 (237)
T 3b7b_A 149 HWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSA 226 (237)
T ss_dssp HHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998 588999999999999999999999999996 566799999999999999999998766
Q ss_pred HHHhc
Q 009457 245 SLLLS 249 (534)
Q Consensus 245 ~~Ll~ 249 (534)
..+++
T Consensus 227 ~~l~~ 231 (237)
T 3b7b_A 227 LQMSK 231 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 18
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.1e-37 Score=293.77 Aligned_cols=224 Identities=21% Similarity=0.211 Sum_probs=116.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136 (534)
Q Consensus 57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~ 136 (534)
++||||.|+..|+.+++++|++.+. ...+..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA 83 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCG-GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhch-hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence 4455555555555555555554421 223344445555555555555555555555554444 34445555555555555
Q ss_pred CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216 (534)
Q Consensus 137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ 216 (534)
|+.+++++|++.+.+ .+.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.
T Consensus 84 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 84 GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFY 161 (231)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 555555555555544 334455555555555555555555555555554 244555555555555555555555555553
Q ss_pred CccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCC
Q 009457 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290 (534)
Q Consensus 217 ~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga 290 (534)
+.+++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|.||+|+|.. .++. +++++|.+.|+
T Consensus 162 -g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~--~~~~--~i~~lL~~~~a 229 (231)
T 3aji_A 162 -KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKG--GLGL--ILKRLAEGEEA 229 (231)
T ss_dssp -TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCH--HHHH--HHHHHHHHHHH
T ss_pred -CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHh--hHHH--HHHHHHccccc
Confidence 334455555555555555555555555555553 55555555555555555544 2222 55555555554
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=6.8e-38 Score=298.94 Aligned_cols=227 Identities=15% Similarity=0.176 Sum_probs=201.9
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHh----cCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDN----LTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFC 80 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~----~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~ 80 (534)
+.+|.+|+||||+|++.|+.++++.|++. +.+ ++..|..|.||||+|+..|+.+++++|++.+
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-------------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------CCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 46799999999999999999999999983 322 4567889999999999999999999999987
Q ss_pred ChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCc----cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 009457 81 DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP----ELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIV 156 (534)
Q Consensus 81 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~----~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~ 156 (534)
.+++..+..|.||||+|+..|+.+++++|++.++ ++ +..|..|.||||+|+..|+.+++++|++.+.+. +..
T Consensus 70 --~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~ 145 (241)
T 1k1a_A 70 --ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADI-DAV 145 (241)
T ss_dssp --CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCC
T ss_pred --CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccc
Confidence 5677789999999999999999999999999987 44 677899999999999999999999999999884 455
Q ss_pred c-cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHH
Q 009457 157 R-KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235 (534)
Q Consensus 157 d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A 235 (534)
+ ..|.||||+|++.|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 146 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A 223 (241)
T 1k1a_A 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVA 223 (241)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTC
T ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHH
Confidence 5 8899999999999999999999999998 588999999999999999999999999996 566799999999999999
Q ss_pred HHcCCHHHHHHHhcc
Q 009457 236 TRKCRPQIVSLLLSY 250 (534)
Q Consensus 236 ~~~~~~~iv~~Ll~~ 250 (534)
+..|+.++++.|.+.
T Consensus 224 ~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 224 RSRRVIDILRGKATR 238 (241)
T ss_dssp SSHHHHHHHTC----
T ss_pred HhcCcHHHHhhhccC
Confidence 999999999998874
No 20
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.9e-37 Score=292.92 Aligned_cols=211 Identities=23% Similarity=0.233 Sum_probs=194.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHH
Q 009457 89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA 168 (534)
Q Consensus 89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 168 (534)
+..+.+|||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAA 81 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHH
Confidence 456889999999999999999999999988788899999999999999999999999999887 6678999999999999
Q ss_pred HcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHh
Q 009457 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248 (534)
Q Consensus 169 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll 248 (534)
..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998 588899999999999999999999999996 5567899999999999999999999999999
Q ss_pred ccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHhh
Q 009457 249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKR 307 (534)
Q Consensus 249 ~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~ 307 (534)
++ |++++.+|..|.||||+|+. .++. +++++|++.|++....+..+.+++++..
T Consensus 160 ~~-g~~~~~~~~~g~t~L~~A~~--~~~~--~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 213 (231)
T 3aji_A 160 FY-KASTNIQDTEGNTPLHLACD--EERV--EEAKFLVTQGASIYIENKEEKTPLQVAK 213 (231)
T ss_dssp HT-TCCSCCCCTTSCCHHHHHHH--TTCH--HHHHHHHHTTCCSCCCCTTSCCHHHHSC
T ss_pred hc-CCCccccCCCCCCHHHHHHH--CCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 94 99999999999999999998 7766 9999999999999888888888888764
No 21
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4e-37 Score=291.18 Aligned_cols=221 Identities=21% Similarity=0.199 Sum_probs=199.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhC--ccccccCCCCCCcHHHHHH
Q 009457 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW--PELCKSCDSSNTSPLYSAA 134 (534)
Q Consensus 57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~--~~l~~~~d~~g~tpLh~Aa 134 (534)
|+||||.|+..|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.+ +++....|..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCc-cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 7899999999999999999999863 334557899999999999999999999999999 6664447899999999999
Q ss_pred HcCCHHHHHHHHhcC--CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHH
Q 009457 135 VQDHLDVVNTILDAD--VSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEY 212 (534)
Q Consensus 135 ~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~ 212 (534)
..|+.+++++|++.+ .+ .+..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999998 55 667889999999999999999999999999998 58899999999999999999999999
Q ss_pred hHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHH
Q 009457 213 ILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE 287 (534)
Q Consensus 213 Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~ 287 (534)
|++.++.+++.+|..|+||||+|+..|+.+++++|++..|++++.+|.+|.||+|+|.. . ++.++|++
T Consensus 159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~--~-----~~~~~l~~ 226 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN--E-----QVKKFFLN 226 (228)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS--T-----THHHHHHT
T ss_pred HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH--H-----HHHHHHHh
Confidence 99987688899999999999999999999999999933699999999999999999965 2 55666654
No 22
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=297.89 Aligned_cols=222 Identities=22% Similarity=0.284 Sum_probs=201.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHH
Q 009457 56 TGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAV 135 (534)
Q Consensus 56 ~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~ 135 (534)
+|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence 5899999999999999999999987 567888999999999999999999999999999888 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457 136 QDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS 215 (534)
Q Consensus 136 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~ 215 (534)
.|+.+++++|++.+++.. .+.+|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 999999999999998843 456699999999999999999999999998 58899999999999999999999999999
Q ss_pred cCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH 292 (534)
Q Consensus 216 ~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~ 292 (534)
.+ .++|. |..|+||||+|+..++.+++++|++. |++++.+|.+|+||+|+|+. . . +++++|++.+...
T Consensus 156 ~g-~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~A~~--~--~--~~~~~ll~~~~~~ 223 (261)
T 2xai_A 156 SG-ADVNQ-GKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEGKRPVELVPP--E--S--PLAQLFLEREGPP 223 (261)
T ss_dssp HT-CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCT--T--C--THHHHHHHC-CCC
T ss_pred cC-CCCCC-CCCCCChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCChhhhccc--c--c--cHHHHHHhccCCc
Confidence 74 45564 88999999999999999999999995 99999999999999999985 3 3 6888998887654
No 23
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=302.59 Aligned_cols=229 Identities=15% Similarity=0.142 Sum_probs=205.9
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI 84 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~ 84 (534)
...+..|.||||+|++.|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .+
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~ 117 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-------------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQ 117 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-------------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CC
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CC
Confidence 34688899999999999999999999998765 4678899999999999999999999999987 56
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL 164 (534)
Q Consensus 85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 164 (534)
++..+..|.||||+|+..|+.+++++|++.++++. .+..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.|||
T Consensus 118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L 194 (285)
T 3d9h_A 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPL 194 (285)
T ss_dssp SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHH
T ss_pred CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHH
Confidence 77889999999999999999999999999999873 345699999999999999999999999988 678899999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV 244 (534)
Q Consensus 165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv 244 (534)
|+|+..|+.+++++|++.++++ + .|..|+||||+|+..|+.+++++|++. +.+++.+|.+|+||||+|+ ++.+++
T Consensus 195 ~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~--~~~~~~ 269 (285)
T 3d9h_A 195 YLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVP--PESPLA 269 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSC--TTSHHH
T ss_pred HHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhc--CccHHH
Confidence 9999999999999999999985 5 488999999999999999999999996 6678999999999999999 567999
Q ss_pred HHHhccCCcccc
Q 009457 245 SLLLSYTSIDVN 256 (534)
Q Consensus 245 ~~Ll~~~g~~~~ 256 (534)
++|+++.++++.
T Consensus 270 ~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 270 QLFLEREGASLP 281 (285)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHhhccCCC
Confidence 999997677654
No 24
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.2e-37 Score=314.65 Aligned_cols=232 Identities=19% Similarity=0.224 Sum_probs=210.5
Q ss_pred HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcH
Q 009457 50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP 129 (534)
Q Consensus 50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp 129 (534)
.+..|..|.||||+|+..|+.++|++|++.+ .+++..|..|.||||+|+..|+.+++++|++.+++. .+..|.||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~ 87 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKP 87 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCH
Confidence 4567788999999999999999999999987 567889999999999999999999999999999954 34589999
Q ss_pred HHHHHHcCCHHHHHHHHhc----CCCcccc-----------------cccCCCcHHHHHHHcC--CHHHHHHHHhcCCcc
Q 009457 130 LYSAAVQDHLDVVNTILDA----DVSCTRI-----------------VRKNGKTALHTAARYG--LINIVTALIDRDPEI 186 (534)
Q Consensus 130 Lh~Aa~~g~~~~v~~Ll~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~ 186 (534)
||+|+..|+.+++++|++. +.+ .+. .|..|.||||+|+..| +.+++++|++.+++
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~- 165 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS- 165 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-
Confidence 9999999999999999998 655 333 7889999999999999 99999999999998
Q ss_pred ceecCCCCchHHHHHHhCCCHHHHHHhHhcCcc----ccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCC
Q 009457 187 VTIKDKKGQTALHMAVKGQCPSVVEYILSADHL----ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQR 262 (534)
Q Consensus 187 ~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~----~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g 262 (534)
++..|..|+||||+|+..|+.+++++|++.+.. ++|.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g 244 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEH 244 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTS
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCC
Confidence 588999999999999999999999999997543 2799999999999999999999999999995 99999999999
Q ss_pred CCHHHHHHHccCCCCHHHHHHHHHHcCCccc
Q 009457 263 ETAMDLADKLQYGDSTLEIKEALAEAGAKHA 293 (534)
Q Consensus 263 ~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~ 293 (534)
.||||+|+. .++. +++++|++.|++..
T Consensus 245 ~tpL~~A~~--~g~~--~~v~~Ll~~~~~~~ 271 (364)
T 3ljn_A 245 TVPLYLSVR--AAMV--LLTKELLQKTDVFL 271 (364)
T ss_dssp CCHHHHHHH--TCCH--HHHHHHHHHSCHHH
T ss_pred CCHHHHHHH--hChH--HHHHHHHHcCCchh
Confidence 999999999 7777 99999999998763
No 25
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=6.1e-37 Score=289.90 Aligned_cols=222 Identities=20% Similarity=0.260 Sum_probs=198.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc-cC
Q 009457 11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI-RS 89 (534)
Q Consensus 11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~ 89 (534)
|+||||.|++.|+.++++.|++.++.. ....|..|.||||+|+..|+.+++++|++.+...+... .+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 69 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSL------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 69 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGG------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccc------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCC
Confidence 789999999999999999999997642 34578999999999999999999999999874444555 78
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhhC--ccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457 90 RSDMNTFHVAAKKGHLGIAKELVSIW--PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167 (534)
Q Consensus 90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~--~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 167 (534)
..|.||||+|+..|+.+++++|++++ +++ +..|..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|
T Consensus 70 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A 147 (228)
T 2dzn_A 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRA 147 (228)
T ss_dssp TTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHH
Confidence 89999999999999999999999998 665 67789999999999999999999999999988 678899999999999
Q ss_pred HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247 (534)
Q Consensus 168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L 247 (534)
+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|++..+.+++.+|.+|.||||+|+.. ++.++|
T Consensus 148 ~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l 224 (228)
T 2dzn_A 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFF 224 (228)
T ss_dssp HHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHH
T ss_pred HHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHH
Confidence 99999999999999994336889999999999999999999999999444677899999999999999754 566667
Q ss_pred hc
Q 009457 248 LS 249 (534)
Q Consensus 248 l~ 249 (534)
++
T Consensus 225 ~~ 226 (228)
T 2dzn_A 225 LN 226 (228)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 26
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=299.93 Aligned_cols=222 Identities=22% Similarity=0.250 Sum_probs=104.6
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCH-HHHHHHHhcCChhh
Q 009457 6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQ-DIFSCLLKFCDVEI 84 (534)
Q Consensus 6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~-~iv~~Ll~~~~~~~ 84 (534)
..|.++.++|+.||+.|+.++|+.||+.+...... ....++..+..|.||||.|+..++. ++++.|++.+ .+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-----~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--ad 78 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED-----AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LG 78 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------CC--CC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc-----ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CC
Confidence 35677889999999999999999999987642110 0122344555566666666655543 3555555554 34
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL 164 (534)
Q Consensus 85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 164 (534)
++..|.+|+||||+|+..|+.+++++|++.++++ ...+..|.||+|+|+..++.+++++|++.+++ ++.+|..|.|||
T Consensus 79 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL 156 (269)
T 4b93_B 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPL 156 (269)
T ss_dssp TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHH
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence 4555555555555555555555555555555554 34455555555555555555555555555544 334455555555
Q ss_pred HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHc
Q 009457 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK 238 (534)
Q Consensus 165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~ 238 (534)
|+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+.+
T Consensus 157 ~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~ 228 (269)
T 4b93_B 157 IYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQN 228 (269)
T ss_dssp HHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTT
T ss_pred HHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhC
Confidence 555555555555555555444 244444445555555555555555444443 233444444444444444433
No 27
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=284.33 Aligned_cols=232 Identities=24% Similarity=0.285 Sum_probs=210.8
Q ss_pred hcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHH
Q 009457 51 AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPL 130 (534)
Q Consensus 51 ~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL 130 (534)
...|..|.|||+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+++.....+..|.|||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence 346788999999999999999999999987 557788899999999999999999999999999998777777899999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCC-HHH
Q 009457 131 YSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQC-PSV 209 (534)
Q Consensus 131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~i 209 (534)
|+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..++ .++
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHH
Confidence 999999999999999999888 567899999999999999999999999999998 58899999999999997666 889
Q ss_pred HHHhHhcCccccccccC-CCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHc
Q 009457 210 VEYILSADHLILNERDK-KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEA 288 (534)
Q Consensus 210 v~~Ll~~~~~~in~~d~-~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ 288 (534)
+++|++. +.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||+|+|+. .++. +++++|++.
T Consensus 159 ~~~L~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~--~~~~--~~v~~L~~~ 232 (240)
T 3eu9_A 159 TRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQ--RKNV--WMINHLQEA 232 (240)
T ss_dssp HHHHHHT-TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHH--TTCH--HHHHHHHHH
T ss_pred HHHHHhc-CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH--cCcH--HHHHHHHHh
Confidence 9999986 556688886 899999999999999999999996 89999999999999999999 7777 999999999
Q ss_pred CCcc
Q 009457 289 GAKH 292 (534)
Q Consensus 289 ga~~ 292 (534)
|++.
T Consensus 233 ~~~~ 236 (240)
T 3eu9_A 233 RQAK 236 (240)
T ss_dssp C---
T ss_pred hhcc
Confidence 8865
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=297.28 Aligned_cols=215 Identities=22% Similarity=0.277 Sum_probs=171.2
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCChh------hhhccCCCCCcHHHHHHHcCCH-HHHHHHHhhCccccccCCC
Q 009457 52 MQNDTGETALYISAANNFQDIFSCLLKFCDVE------IVKIRSRSDMNTFHVAAKKGHL-GIAKELVSIWPELCKSCDS 124 (534)
Q Consensus 52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~------~~~~~~~~g~t~Lh~Aa~~g~~-~iv~~Ll~~~~~l~~~~d~ 124 (534)
.+|..+.+||+.||..|+.++|++|++.+... ..+..+..|.||||.|+..++. .+++.|++.|.++ +..|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC
Confidence 45667789999999999999999999986422 2455677899999999988876 4889999999998 78899
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhC
Q 009457 125 SNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG 204 (534)
Q Consensus 125 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 204 (534)
+|.||||+|+..|+.+++++|++.+++ .+..+.+|.||+|.|+..++.++++.|++.+++ ++.+|..|+||||+|+..
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence 999999999999999999999999988 677899999999999999999999999999999 589999999999999999
Q ss_pred CCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457 205 QCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 205 g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~ 271 (534)
|+.+++++|++. +.++|.+|..|+||||+|+..|+.+++++|+++ |+|++.+|.+|+||||+|++
T Consensus 163 g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 163 GHHELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp TCGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCT
T ss_pred CCHHHHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHh
Confidence 999999999996 567799999999999999999999999999995 99999999999999999976
No 29
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.2e-36 Score=293.37 Aligned_cols=251 Identities=18% Similarity=0.176 Sum_probs=190.4
Q ss_pred HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCh-hhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCc
Q 009457 50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDV-EIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS 128 (534)
Q Consensus 50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~t 128 (534)
++.+|..|.||||+|+..|+.++|++|++.+.. ..++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 456789999999999999999999999987532 237788999999999999999999999999999998 678999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcc------------cccccCCCcHHHHHHHcCCHHHHHHHH-hcCCccceecCCCCc
Q 009457 129 PLYSAAVQDHLDVVNTILDADVSCT------------RIVRKNGKTALHTAARYGLINIVTALI-DRDPEIVTIKDKKGQ 195 (534)
Q Consensus 129 pLh~Aa~~g~~~~v~~Ll~~~~~~~------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll-~~~~~~~~~~d~~g~ 195 (534)
|||+|+..|+.+++++|++.++... ......+.++++.++..+....+..++ ..+.+ ++..|..|+
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 159 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGH 159 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG-TTCCCTTSC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCc
Confidence 9999999999999999999876531 122344677888777766555444433 33344 577899999
Q ss_pred hHHHHHHhCCCHHHHHHhHhcCccccccccC-CCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccC
Q 009457 196 TALHMAVKGQCPSVVEYILSADHLILNERDK-KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQY 274 (534)
Q Consensus 196 t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~-~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~ 274 (534)
||||+|+..|+.+++++|++. +..++.++. .|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+. .
T Consensus 160 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~--~ 235 (282)
T 1oy3_D 160 TPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALL--R 235 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHT--S
T ss_pred CHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHH--c
Confidence 999999999999999999997 455687775 499999999999999999999995 99999999999999999998 7
Q ss_pred CCCHHHHHHHHHHcCCccccccCChhhHHHHhhh
Q 009457 275 GDSTLEIKEALAEAGAKHARYVGQVDEAMELKRT 308 (534)
Q Consensus 275 ~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~ 308 (534)
++. +++++|+++|++....+..+.++++....
T Consensus 236 ~~~--~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 236 PNP--ILARLLRAHGAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp SCH--HHHHHHHHTTCCCCCCC------------
T ss_pred CCc--HHHHHHHHcCCCcCcCCCcccccccccCC
Confidence 776 99999999999998888877777765543
No 30
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.7e-35 Score=297.55 Aligned_cols=234 Identities=23% Similarity=0.278 Sum_probs=203.0
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC-CCCcHHHHHHHcCCHHHHHHHHhhCccc-------------
Q 009457 53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR-SDMNTFHVAAKKGHLGIAKELVSIWPEL------------- 118 (534)
Q Consensus 53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l------------- 118 (534)
.+.+|+||||.|++.|+.++|++||++| .+++..+. .|+||||+|+..|+.+++++|+++++++
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL 98 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHH
Confidence 3445789999999999999999999997 55666654 5999999999999999999999988754
Q ss_pred -------------------cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---------cccccCCCcHHHHHHHc
Q 009457 119 -------------------CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCT---------RIVRKNGKTALHTAARY 170 (534)
Q Consensus 119 -------------------~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~ 170 (534)
.+..|..|.||||+|+..|+.+++++|++.+++.. ...+..|.||||+|++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 23567889999999999999999999999887632 23456799999999999
Q ss_pred CCHHHHHHHHhc-CCccceecCCCCchHHHHHHhCCC----HHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHH
Q 009457 171 GLINIVTALIDR-DPEIVTIKDKKGQTALHMAVKGQC----PSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS 245 (534)
Q Consensus 171 g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~ 245 (534)
|+.++|++|+++ +.+ ++.+|..|+|++|.++..+. .+++++|+++ +.++|.+|.+|+||||+|+..|+.++++
T Consensus 179 g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~ 256 (337)
T 4g8k_A 179 GHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQ 256 (337)
T ss_dssp TCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence 999999999975 666 68899999999998876443 3578888886 5677999999999999999999999999
Q ss_pred HHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcccc
Q 009457 246 LLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHAR 294 (534)
Q Consensus 246 ~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~ 294 (534)
.|++..|++++.+|.+|+||||+|+. .++. +++++|+++||+...
T Consensus 257 ~Ll~~~~~~vn~~d~~G~TpL~~A~~--~g~~--~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 257 RLLEQEHIEINDTDSDGKTALLLAVE--LKLK--KIAELLCKRGASTDC 301 (337)
T ss_dssp HHHTSTTCCTTCBCTTSCBHHHHHHH--TTCH--HHHHHHHTTSCSSTT
T ss_pred HHHHhcCCcccCcCCCCCCHHHHHHH--cCCH--HHHHHHHHCCCCCCC
Confidence 99998899999999999999999999 7777 999999999998743
No 31
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-36 Score=306.99 Aligned_cols=227 Identities=17% Similarity=0.221 Sum_probs=204.2
Q ss_pred CC-CCCChHHHHHHHcCCHHHHHHHH--------HhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009457 7 FR-FITHQSFFSAVRSGDLETLKNII--------DNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77 (534)
Q Consensus 7 ~~-~~g~t~Lh~Aa~~G~~~~v~~ll--------~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll 77 (534)
.| ..|.||||+|+..|+.++++.|+ +.+.+ ++.+|..|.||||+|+..|+.++|++|+
T Consensus 120 ~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-------------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll 186 (373)
T 2fo1_E 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-------------VNAMDCDENTPLMLAVLARRRRLVAYLM 186 (373)
T ss_dssp CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-------------TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-------------CcCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence 44 78999999999999999888887 45544 4678899999999999999999999999
Q ss_pred hcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhC---ccccccCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCC
Q 009457 78 KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW---PELCKSCDSSNTSPLYSAAVQD---HLDVVNTILDADVS 151 (534)
Q Consensus 78 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~---~~l~~~~d~~g~tpLh~Aa~~g---~~~~v~~Ll~~~~~ 151 (534)
+.+ .+++..+..|.||||+|+..|+.+++++|++.+ .++ +..|..|.||||+|+..+ +.+++++|++.+++
T Consensus 187 ~~g--a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~ 263 (373)
T 2fo1_E 187 KAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263 (373)
T ss_dssp HTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC
T ss_pred HCC--CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC
Confidence 987 567788999999999999999999999999987 454 678999999999999998 89999999999887
Q ss_pred ccc-------ccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccc
Q 009457 152 CTR-------IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNER 224 (534)
Q Consensus 152 ~~~-------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~ 224 (534)
... ..|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|+++ +.+++.+
T Consensus 264 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~ 342 (373)
T 2fo1_E 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAV 342 (373)
T ss_dssp SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCC
T ss_pred cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCC
Confidence 432 35778999999999999999999999987333689999999999999999999999999996 6677999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457 225 DKKGNTAVHIATRKCRPQIVSLLLSY 250 (534)
Q Consensus 225 d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 250 (534)
|..|+||||+|+.+|+.+++++|+++
T Consensus 343 d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 343 DATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp CSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 99999999999999999999999995
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.8e-36 Score=293.30 Aligned_cols=240 Identities=18% Similarity=0.194 Sum_probs=211.2
Q ss_pred HHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHH
Q 009457 19 VRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHV 98 (534)
Q Consensus 19 a~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~ 98 (534)
++..+.+.+..+|.... ++.+|..|.||||+|+..|+.++|++|++.+ .+++.. +|.||||+
T Consensus 7 i~~~~~~~v~~lL~~~~--------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~ 68 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKD--------------TFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQ 68 (285)
T ss_dssp GGGCCHHHHHHHHHSTT--------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHH
T ss_pred HHhcCHHHHHHHHHhCC--------------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHH
Confidence 45677777777776542 4678899999999999999999999999987 444444 59999999
Q ss_pred HHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC-CcHHHHHHHcCCHHHHH
Q 009457 99 AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNG-KTALHTAARYGLINIVT 177 (534)
Q Consensus 99 Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~ 177 (534)
|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..+..| .||||+|+..|+.++++
T Consensus 69 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~ 146 (285)
T 3kea_A 69 AATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVS 146 (285)
T ss_dssp HTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999998 67899999999999999999999999999988 67888889 89999999999999999
Q ss_pred HHHhcCCccceecCC-CCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChH-HHHHHHcCCHHHHHHHhccCCccc
Q 009457 178 ALIDRDPEIVTIKDK-KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA-VHIATRKCRPQIVSLLLSYTSIDV 255 (534)
Q Consensus 178 ~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~-Lh~A~~~~~~~iv~~Ll~~~g~~~ 255 (534)
+|++.+++. .+. .|+||||+|+..|+.+++++|+++ +.+++.+|..|+|| ||+|+..++.+++++|+++ |+++
T Consensus 147 ~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~ 221 (285)
T 3kea_A 147 YFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINI 221 (285)
T ss_dssp HHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCS
T ss_pred HHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence 999999874 233 899999999999999999999997 66789999999998 9999999999999999995 9999
Q ss_pred cccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcccc
Q 009457 256 NAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHAR 294 (534)
Q Consensus 256 ~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~ 294 (534)
+.+|. .|+. .++. +++++|+++|++...
T Consensus 222 ~~~~~-------~a~~--~~~~--~iv~~Ll~~g~~~~~ 249 (285)
T 3kea_A 222 YSANL-------ENVL--LDDA--EIAKMIIEKHVEYKS 249 (285)
T ss_dssp TTTTG-------GGGT--TTCH--HHHHHHHHHHHHHTT
T ss_pred CCCCh-------hhhh--cCCH--HHHHHHHHcCCCCCC
Confidence 99884 2333 5555 999999999998744
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-36 Score=298.54 Aligned_cols=240 Identities=22% Similarity=0.270 Sum_probs=206.9
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457 6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV 85 (534)
Q Consensus 6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~ 85 (534)
..+..|.||||.|+..|+.++|+.|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .++
T Consensus 35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~ 99 (299)
T 1s70_B 35 KVKFDDGAVFLAACSSGDTEEVLRLLERGAD-------------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANI 99 (299)
T ss_dssp CCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCT
T ss_pred ccccCCccHHHHHHHcCCHHHHHHHHHcCCC-------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCC
Confidence 3455678999999999999999999999876 4567889999999999999999999999987 567
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHH
Q 009457 86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH 165 (534)
Q Consensus 86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 165 (534)
+..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..++.++++.++.......+..+..+.++++
T Consensus 100 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 178 (299)
T 1s70_B 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178 (299)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH
Confidence 888999999999999999999999999999988 6779999999999999999999999887544334433333444443
Q ss_pred HHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHH
Q 009457 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS 245 (534)
Q Consensus 166 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~ 245 (534)
..+..++..+.......+..|.||||+|+..|+.+++++|++. +.++|.+|..|+||||+|+..|+.++++
T Consensus 179 --------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~ 249 (299)
T 1s70_B 179 --------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACR 249 (299)
T ss_dssp --------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred --------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHH
Confidence 3345566666554566778999999999999999999999986 5677999999999999999999999999
Q ss_pred HHhccCCccccccccCCCCHHHHHHH
Q 009457 246 LLLSYTSIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 246 ~Ll~~~g~~~~~~n~~g~t~L~lA~~ 271 (534)
+|+++ |++++.+|..|+||+|+|.+
T Consensus 250 ~Ll~~-gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 250 ILVEN-LCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp HHHHT-TCCTTCCCTTSCCTTTSCCS
T ss_pred HHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence 99995 99999999999999999965
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=279.57 Aligned_cols=231 Identities=19% Similarity=0.236 Sum_probs=206.6
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI 84 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~ 84 (534)
...|..|.|+||.|++.|+.++++.|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+.. .
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~ 68 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-------------VRQPDKENVTLLHWAAINNRIDLVKYYISKGAI-V 68 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCC-------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc-c
Confidence 45688899999999999999999999999876 456788999999999999999999999998732 2
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL 164 (534)
Q Consensus 85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 164 (534)
....+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|||
T Consensus 69 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l 146 (240)
T 3eu9_A 69 DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPL 146 (240)
T ss_dssp TCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred hhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHH
Confidence 3344566999999999999999999999999988 67799999999999999999999999999988 677899999999
Q ss_pred HHHHHcCC-HHHHHHHHhcCCccceecCC-CCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHH
Q 009457 165 HTAARYGL-INIVTALIDRDPEIVTIKDK-KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ 242 (534)
Q Consensus 165 h~A~~~g~-~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~ 242 (534)
|+|+..++ .+++++|++.+++. +..+. .|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+
T Consensus 147 ~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~ 224 (240)
T 3eu9_A 147 MWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVW 224 (240)
T ss_dssp HHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 99997776 89999999999984 66665 899999999999999999999997 5667999999999999999999999
Q ss_pred HHHHHhccCCcc
Q 009457 243 IVSLLLSYTSID 254 (534)
Q Consensus 243 iv~~Ll~~~g~~ 254 (534)
++++|++. +.+
T Consensus 225 ~v~~L~~~-~~~ 235 (240)
T 3eu9_A 225 MINHLQEA-RQA 235 (240)
T ss_dssp HHHHHHHH-C--
T ss_pred HHHHHHHh-hhc
Confidence 99999995 433
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.5e-35 Score=276.18 Aligned_cols=218 Identities=18% Similarity=0.223 Sum_probs=193.9
Q ss_pred cCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 009457 67 NNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL 146 (534)
Q Consensus 67 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll 146 (534)
.|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+
T Consensus 1 gg~~~~i~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 1 GDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ----CCEETTEETTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHcCC-CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 367888999998863 222345789999999999999999999999999887 677899999999999999999999999
Q ss_pred hcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccC
Q 009457 147 DADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDK 226 (534)
Q Consensus 147 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~ 226 (534)
+.++...+..+..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++. +.+++.+|.
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~ 156 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNN 156 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCC
Confidence 998866788899999999999999999999999999988 588899999999999999999999999997 567799999
Q ss_pred CCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccc
Q 009457 227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHA 293 (534)
Q Consensus 227 ~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~ 293 (534)
.|.||||+|+..++.+++++|+++ |++++.+|..|.||+|+|+. .++. +++++|++.|+...
T Consensus 157 ~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~--~~~~--~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 157 REETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQE--RMHH--DIVRLLDEYNLVRS 218 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH--TTCH--HHHHHHHHTTCSSC
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHH--hcch--HHHHHHHHcCCCcc
Confidence 999999999999999999999995 89999999999999999998 7776 99999999999763
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.5e-35 Score=275.59 Aligned_cols=215 Identities=20% Similarity=0.224 Sum_probs=194.7
Q ss_pred CCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHH
Q 009457 22 GDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAK 101 (534)
Q Consensus 22 G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~ 101 (534)
|+.+++++|++++.+.. ...|..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+.
T Consensus 2 g~~~~i~~Ll~~g~~~~------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~ 67 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLH------------NQTDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVS 67 (223)
T ss_dssp ---CCEETTEETTCCTT------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcc------------cccCCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHH
Confidence 67888888998887642 335789999999999999999999999987 5677889999999999999
Q ss_pred cCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHh
Q 009457 102 KGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALID 181 (534)
Q Consensus 102 ~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 181 (534)
.|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|++
T Consensus 68 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 146 (223)
T 2f8y_A 68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK 146 (223)
T ss_dssp TTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999866688899999999999999999999999999988 67789999999999999999999999999
Q ss_pred cCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcc
Q 009457 182 RDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSID 254 (534)
Q Consensus 182 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~ 254 (534)
.+++ ++.+|..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|+++ |+.
T Consensus 147 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~ 216 (223)
T 2f8y_A 147 NGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLV 216 (223)
T ss_dssp TTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCS
T ss_pred cCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHHhcchHHHHHHHHc-CCC
Confidence 9998 588999999999999999999999999997 556799999999999999999999999999996 654
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.9e-35 Score=286.11 Aligned_cols=224 Identities=11% Similarity=0.100 Sum_probs=200.3
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI 84 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~ 84 (534)
+..|..|.||||+|++.|+.++++.|++.+.+. +.. +|.||||+|+..|+.+++++|++++ .+
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g--a~ 87 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALK-------------NLL--ENEFPLHQAATLEDTKIVKILLFSG--LD 87 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-------------SCC--TTCCHHHHHTTSSSCHHHHHHHHTT--CC
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-------------CCC--CCCCHHHHHHHcCCHHHHHHHHHCC--CC
Confidence 457889999999999999999999999997653 223 4899999999999999999999987 56
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCc
Q 009457 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSN-TSPLYSAAVQDHLDVVNTILDADVSCTRIVRK-NGKT 162 (534)
Q Consensus 85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t 162 (534)
++..+..|.||||+|+..|+.+++++|+++++++ +..|..| .||||+|+..|+.+++++|++.+++. .+. .|.|
T Consensus 88 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t 163 (285)
T 3kea_A 88 DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLS 163 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHH
T ss_pred CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCcc
Confidence 7788999999999999999999999999999998 6778888 89999999999999999999999874 333 8999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCccceecCCCCchH-HHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCH
Q 009457 163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA-LHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241 (534)
Q Consensus 163 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~ 241 (534)
|||+|+..|+.+++++|++++++ ++.+|..|+|| ||+|+..|+.+++++|+++ +.+++.+| +.|+..|+.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~~~~~-------~~a~~~~~~ 234 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIYSAN-------LENVLLDDA 234 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCSTTTT-------GGGGTTTCH
T ss_pred HHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCC-------hhhhhcCCH
Confidence 99999999999999999999998 58899999998 9999999999999999997 56667777 356789999
Q ss_pred HHHHHHhccCCccccccc
Q 009457 242 QIVSLLLSYTSIDVNAIN 259 (534)
Q Consensus 242 ~iv~~Ll~~~g~~~~~~n 259 (534)
+++++|+++ |++++...
T Consensus 235 ~iv~~Ll~~-g~~~~~~~ 251 (285)
T 3kea_A 235 EIAKMIIEK-HVEYKSDS 251 (285)
T ss_dssp HHHHHHHHH-HHHHTTCT
T ss_pred HHHHHHHHc-CCCCCCcc
Confidence 999999995 88776544
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-34 Score=282.41 Aligned_cols=270 Identities=18% Similarity=0.188 Sum_probs=224.5
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcH
Q 009457 16 FSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNT 95 (534)
Q Consensus 16 h~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 95 (534)
+.+++.|..+.++.++............ ......+..|.||||.|+..|+.++|++|++.+ .+++..+..|.||
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~ 76 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVK----RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTA 76 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCC----CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBH
T ss_pred hhHHHHHHHHHHHHHHcccccccccccc----CcccccccCCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCH
Confidence 3578889999999999887654321110 001223457889999999999999999999987 5678889999999
Q ss_pred HHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHH
Q 009457 96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175 (534)
Q Consensus 96 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i 175 (534)
||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..|+.++
T Consensus 77 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~ 154 (299)
T 1s70_B 77 LHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEEL 154 (299)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHH
Confidence 99999999999999999999988 77899999999999999999999999999988 66789999999999999999999
Q ss_pred HHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccc
Q 009457 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDV 255 (534)
Q Consensus 176 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~ 255 (534)
++.++......++..+..+.++++. .+..++..+.......+..|.||||+|+..|+.+++++|++. |+++
T Consensus 155 ~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~ 225 (299)
T 1s70_B 155 LQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDV 225 (299)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCT
T ss_pred HHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCC
Confidence 9998876443334444444444443 334455555555567788999999999999999999999994 9999
Q ss_pred cccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHh
Q 009457 256 NAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELK 306 (534)
Q Consensus 256 ~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~ 306 (534)
+.+|..|.||||+|+. .++. +++++|++.|++....+..+.+++++.
T Consensus 226 ~~~d~~g~tpL~~A~~--~~~~--~~v~~Ll~~gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 226 NIKDYDGWTPLHAAAH--WGKE--EACRILVENLCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp TCCCTTCCCHHHHHHH--TTCH--HHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred CCcCCCCCcHHHHHHh--cCCH--HHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999 7776 999999999999988777777777765
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=7.4e-35 Score=277.47 Aligned_cols=216 Identities=19% Similarity=0.260 Sum_probs=183.9
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCChh--hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcH
Q 009457 52 MQNDTGETALYISAANNFQDIFSCLLKFCDVE--IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP 129 (534)
Q Consensus 52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp 129 (534)
.+|.+|.||||+|+..|+.+++++|++.+... +++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence 46789999999999999999999999875322 56778889999999999999999999999999887 6788999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCc-----ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCC-CCchHHHHHHh
Q 009457 130 LYSAAVQDHLDVVNTILDADVSC-----TRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDK-KGQTALHMAVK 203 (534)
Q Consensus 130 Lh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~ 203 (534)
||+|+..|+.+++++|++.+.+. .+..+..|.||||+|+..|+.+++++|++.+++ ++.++. .|+||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHH
Confidence 99999999999999999987642 456788899999999999999999999999988 477776 89999999999
Q ss_pred CCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcccc--ccccCCCCHHHHHHH
Q 009457 204 GQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN--AINNQRETAMDLADK 271 (534)
Q Consensus 204 ~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~t~L~lA~~ 271 (534)
.|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|+++ |++.. ..+.+|.||.+.+..
T Consensus 161 ~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 161 LQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp TTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-SCGGGSSCCCCCTTTCCCCC--
T ss_pred cCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHc-chhhhhcCCccchHHHHhhhcc
Confidence 9999999999986 666799999999999999999999999999995 77765 788899998876654
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4.5e-33 Score=264.21 Aligned_cols=191 Identities=25% Similarity=0.255 Sum_probs=156.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhc-CChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcccc----ccCCCCCCcHH
Q 009457 56 TGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELC----KSCDSSNTSPL 130 (534)
Q Consensus 56 ~g~T~L~~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~----~~~d~~g~tpL 130 (534)
.|+||||.|+..|+.+++++|++. + .+++..|..|+||||+|+..|+.+++++|++.+++.. ...|..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTC--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 589999999999999999999987 4 5678889999999999999999999999999998863 34577899999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccc-------------CCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchH
Q 009457 131 YSAAVQDHLDVVNTILDADVSCTRIVRK-------------NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA 197 (534)
Q Consensus 131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 197 (534)
|+|+..|+.+++++|++.+++. +..+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+||
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~ 157 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTV 157 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred HHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence 9999999999999999998873 34433 688888888888888888888888777 47778888888
Q ss_pred HHHHHhCCCHHHH----HHhHhcCcccc-----ccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457 198 LHMAVKGQCPSVV----EYILSADHLIL-----NERDKKGNTAVHIATRKCRPQIVSLLLSY 250 (534)
Q Consensus 198 Lh~A~~~g~~~iv----~~Ll~~~~~~i-----n~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 250 (534)
||+|+..|+.+++ ++|++.+.... +.+|..|+||||+|+..|+.+++++|+++
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 8888888887777 77777644321 56777888888888888888888888874
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.9e-34 Score=272.47 Aligned_cols=221 Identities=15% Similarity=0.163 Sum_probs=187.1
Q ss_pred cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh
Q 009457 4 LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE 83 (534)
Q Consensus 4 ~~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~ 83 (534)
++..|.+|.||||+|++.|+.++++.|++.+.... ..++..|..|.||||+|+..|+.+++++|++.+ .
T Consensus 1 k~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~ 69 (236)
T 1ikn_D 1 KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL---------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--C 69 (236)
T ss_dssp ------CCCCTTHHHHHTTCSSSSSCCCC-----C---------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--C
T ss_pred CCcCCCCCCchhHHHHHcCChhHHHHHHHHhhccH---------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--C
Confidence 46789999999999999999999999999875321 125678899999999999999999999999987 5
Q ss_pred hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcc-----ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q 009457 84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPE-----LCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRK 158 (534)
Q Consensus 84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~-----l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~ 158 (534)
+++..+..|.||||+|+..|+.+++++|++.+++ .....|..|.||||+|+..|+.+++++|++.+++ .+.++.
T Consensus 70 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~ 148 (236)
T 1ikn_D 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEP 148 (236)
T ss_dssp CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCT
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCC
Confidence 6778899999999999999999999999999864 2467788999999999999999999999999988 556776
Q ss_pred -CCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccc-cccccCCCChHHHHHH
Q 009457 159 -NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI-LNERDKKGNTAVHIAT 236 (534)
Q Consensus 159 -~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-in~~d~~g~T~Lh~A~ 236 (534)
.|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++++... ....+..|.||.+.+.
T Consensus 149 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 149 CNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence 999999999999999999999999999 5899999999999999999999999999976543 2467888888876654
Q ss_pred H
Q 009457 237 R 237 (534)
Q Consensus 237 ~ 237 (534)
.
T Consensus 228 ~ 228 (236)
T 1ikn_D 228 E 228 (236)
T ss_dssp -
T ss_pred c
Confidence 3
No 42
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-34 Score=285.94 Aligned_cols=247 Identities=17% Similarity=0.156 Sum_probs=190.0
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHH-H---hcccCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457 6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSEL-M---AMQNDTGETALYISAANNFQDIFSCLLKFCD 81 (534)
Q Consensus 6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~l-l---~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~ 81 (534)
..+..|.|+++ |+.++|+.|++++.++....-....... . ........+.+|+|+..+..++++.|++.+
T Consensus 47 ~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g- 120 (327)
T 1sw6_A 47 KALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ- 120 (327)
T ss_dssp ECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSC-
T ss_pred cCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcC-
Confidence 45678999988 9999999999998664311000000000 0 001112234468899999999999999886
Q ss_pred hhhhhc-cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCcccccc
Q 009457 82 VEIVKI-RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH---LDVVNTILDADVSCTRIVR 157 (534)
Q Consensus 82 ~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~---~~~v~~Ll~~~~~~~~~~d 157 (534)
.+++. .+..|+||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+ .++++.|++.+....+.+|
T Consensus 121 -~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d 198 (327)
T 1sw6_A 121 -LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED 198 (327)
T ss_dssp -CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred -CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC
Confidence 56777 7999999999999999999999999999998 6889999999999999998 6778888877644478899
Q ss_pred cCCCcHHHHHHH----cCCHHHHHHHHhc--------------------CCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457 158 KNGKTALHTAAR----YGLINIVTALIDR--------------------DPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213 (534)
Q Consensus 158 ~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L 213 (534)
..|+||||+|++ .|+.+++++|++. +.+ ++.+|..|.||||.|+. +++|
T Consensus 199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~L 271 (327)
T 1sw6_A 199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWI 271 (327)
T ss_dssp TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHH
T ss_pred CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHH
Confidence 999999999999 8999999999987 566 57889999999999996 8899
Q ss_pred HhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457 214 LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 214 l~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~ 271 (534)
++. ++|.+|.+|+||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|++
T Consensus 272 l~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 272 IAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC
T ss_pred HHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHh
Confidence 986 4799999999999999999999999999995 99999999999999999976
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.5e-32 Score=260.56 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=172.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh---h
Q 009457 10 ITHQSFFSAVRSGDLETLKNIIDN-LTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI---V 85 (534)
Q Consensus 10 ~g~t~Lh~Aa~~G~~~~v~~ll~~-~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~---~ 85 (534)
.|+||||.|++.|+.++++.|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.+.... .
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 68 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM 68 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc
Confidence 589999999999999999999997 544 46788999999999999999999999999873211 1
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCC-------------CCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q 009457 86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDS-------------SNTSPLYSAAVQDHLDVVNTILDADVSC 152 (534)
Q Consensus 86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~-------------~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 152 (534)
+..+..|.||||+|+..|+.+++++|+++++++ +..+. .|.||||+|+..|+.+++++|++.+++
T Consensus 69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~- 146 (232)
T 2rfa_A 69 TSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD- 146 (232)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 456778999999999999999999999999887 33333 799999999999999999999999988
Q ss_pred ccccccCCCcHHHHHHHcCCHHHH----HHHHhcCCccc-----eecCCCCchHHHHHHhCCCHHHHHHhHhcCc
Q 009457 153 TRIVRKNGKTALHTAARYGLINIV----TALIDRDPEIV-----TIKDKKGQTALHMAVKGQCPSVVEYILSADH 218 (534)
Q Consensus 153 ~~~~d~~g~tpLh~A~~~g~~~iv----~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~ 218 (534)
.+.+|.+|.||||+|+..|+.+++ ++|++.+++.. +.+|..|+||||+|++.|+.+++++|+++++
T Consensus 147 ~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 678999999999999999999988 99999998742 5789999999999999999999999999753
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.2e-32 Score=252.30 Aligned_cols=194 Identities=22% Similarity=0.227 Sum_probs=136.9
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457 54 NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA 133 (534)
Q Consensus 54 n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A 133 (534)
+..+.||||.|+..|+.+.++.|+..+. .+++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A 79 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA 79 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 3456777777777777777777777642 245666777777777777777777777777777766 55677777777777
Q ss_pred HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCC-----HH
Q 009457 134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQC-----PS 208 (534)
Q Consensus 134 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~ 208 (534)
+..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..++ .+
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 7777777777777544444566677777777777777777777777777733356677777777777777766 67
Q ss_pred HHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457 209 VVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250 (534)
Q Consensus 209 iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 250 (534)
++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++
T Consensus 160 ~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 160 IVKLLMEN-GADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 77777775 455577777777777777777777777777764
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=8.2e-32 Score=249.55 Aligned_cols=194 Identities=20% Similarity=0.236 Sum_probs=180.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457 90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR 169 (534)
Q Consensus 90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 169 (534)
..+.||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 46889999999999999999999999855588899999999999999999999999999988 67789999999999999
Q ss_pred cCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCC-----HHHH
Q 009457 170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR-----PQIV 244 (534)
Q Consensus 170 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~-----~~iv 244 (534)
.|+.+++++|++.+...++..|..|.||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..++ .+++
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 99999999999666544688999999999999999999999999998768889999999999999999998 9999
Q ss_pred HHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcC
Q 009457 245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAG 289 (534)
Q Consensus 245 ~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~g 289 (534)
++|++. |++++.+|..|.||||+|+. .++. +++++|+++|
T Consensus 162 ~~Ll~~-ga~~~~~~~~g~t~l~~A~~--~~~~--~~~~~Ll~~G 201 (201)
T 3hra_A 162 KLLMEN-GADQSIKDNSGRTAMDYANQ--KGYT--EISKILAQYN 201 (201)
T ss_dssp HHHHHT-TCCTTCCCTTSCCHHHHHHH--HTCH--HHHHHHHTCC
T ss_pred HHHHHC-CCCCCccCCCCCCHHHHHHH--cCCH--hHHHHHHhcC
Confidence 999995 99999999999999999999 6776 9999999887
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3.2e-32 Score=265.19 Aligned_cols=211 Identities=16% Similarity=0.179 Sum_probs=129.7
Q ss_pred HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCC--hhhhh----ccCCCCCcHHHHHHHc---CCHHHHHHHHhhCcccc-
Q 009457 50 MAMQNDTGETALYISAANNFQDIFSCLLKFCD--VEIVK----IRSRSDMNTFHVAAKK---GHLGIAKELVSIWPELC- 119 (534)
Q Consensus 50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~--~~~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~l~- 119 (534)
.+..|..|.||||.|++.|+.++|+.|++.+. ...++ ..+..|.||||+|+.. |+.+++++|++.+++..
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 34578889999999999999999988887421 01111 3477899999999976 89999999999876531
Q ss_pred -----c----cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc--------------CCCcHHHHHHHcCCHHHH
Q 009457 120 -----K----SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRK--------------NGKTALHTAARYGLINIV 176 (534)
Q Consensus 120 -----~----~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~iv 176 (534)
+ ..|..|.||||+|+..|+.+++++|++.+++ .+..+. .|.||||+|+..|+.+++
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 1 1455777788888777777777777777766 444554 466666666666666666
Q ss_pred HHHHh---cCCccceecCCCCchHHHHHHhCCC---------HHHHHHhHhcCccccc-------cccCCCChHHHHHHH
Q 009457 177 TALID---RDPEIVTIKDKKGQTALHMAVKGQC---------PSVVEYILSADHLILN-------ERDKKGNTAVHIATR 237 (534)
Q Consensus 177 ~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~in-------~~d~~g~T~Lh~A~~ 237 (534)
++|++ .+.+ ++.+|..|+||||+|+..|+ .+++++|++. +.++| .+|..|+||||+|+.
T Consensus 165 ~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 165 KFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAAS 242 (273)
T ss_dssp HHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHH
Confidence 66666 5555 35566666666666666555 5566666654 22232 356666666666666
Q ss_pred cCCHHHHHHHhccCCc-cccccccCCCC
Q 009457 238 KCRPQIVSLLLSYTSI-DVNAINNQRET 264 (534)
Q Consensus 238 ~~~~~iv~~Ll~~~g~-~~~~~n~~g~t 264 (534)
.|+.+++++|+++ |+ |+......+.+
T Consensus 243 ~g~~~iv~~Ll~~-ga~dp~~~~~~~~~ 269 (273)
T 2pnn_A 243 SGKIGVLAYILQR-EIHEPECRHAAAHH 269 (273)
T ss_dssp TTCHHHHHHHHHH-HTC-----------
T ss_pred hChHHHHHHHHHC-CCCCchhhhhhhhh
Confidence 6666666666664 44 44444444433
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=6.8e-32 Score=262.90 Aligned_cols=221 Identities=19% Similarity=0.271 Sum_probs=171.6
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHc---CCHHHHHHHHhcCC
Q 009457 5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN---NFQDIFSCLLKFCD 81 (534)
Q Consensus 5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~---g~~~iv~~Ll~~~~ 81 (534)
+..|..|.||||.|++.|+.++|+.|++.+.+.... +.......+..|.||||+|+.. |+.++|++|++.+.
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR-----LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC-----TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccc-----cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 457889999999999999999999999854321100 0001124578999999999987 99999999999852
Q ss_pred hh-----hhhc----cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCC--------------CCCcHHHHHHHcCC
Q 009457 82 VE-----IVKI----RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDS--------------SNTSPLYSAAVQDH 138 (534)
Q Consensus 82 ~~-----~~~~----~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~--------------~g~tpLh~Aa~~g~ 138 (534)
.. .++. .|..|.||||+|+..|+.+++++|+++++++ +..+. .|.||||+|+..|+
T Consensus 82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 160 (273)
T 2pnn_A 82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160 (273)
T ss_dssp HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCC
Confidence 10 0222 4568999999999999999999999999988 45554 79999999999999
Q ss_pred HHHHHHHHh---cCCCcccccccCCCcHHHHHHHcCC---------HHHHHHHHhcCCccc------eecCCCCchHHHH
Q 009457 139 LDVVNTILD---ADVSCTRIVRKNGKTALHTAARYGL---------INIVTALIDRDPEIV------TIKDKKGQTALHM 200 (534)
Q Consensus 139 ~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~d~~g~t~Lh~ 200 (534)
.+++++|++ .+++ .+.+|.+|+||||+|++.|+ .+++++|++.++++- +.+|..|+||||+
T Consensus 161 ~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~ 239 (273)
T 2pnn_A 161 LAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239 (273)
T ss_dssp HHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence 999999999 7887 67899999999999999998 899999999988742 3589999999999
Q ss_pred HHhCCCHHHHHHhHhcCccccccccCCCChHH
Q 009457 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAV 232 (534)
Q Consensus 201 A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~L 232 (534)
|++.|+.+++++|++++..++......+.+|-
T Consensus 240 A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 240 AASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHTTCHHHHHHHHHHHTC-------------
T ss_pred HHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 99999999999999987656666666665553
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.3e-31 Score=258.29 Aligned_cols=206 Identities=20% Similarity=0.189 Sum_probs=128.8
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHc---CCHHHHHHHHhcCCh
Q 009457 10 ITHQSFFSAVRSGDLE----TLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN---NFQDIFSCLLKFCDV 82 (534)
Q Consensus 10 ~g~t~Lh~Aa~~G~~~----~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~---g~~~iv~~Ll~~~~~ 82 (534)
.|+||||.|++.|+.+ +++++++.+.+... .....|..|.||||+|+.. |+.+++++|++.+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~---------~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-- 69 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTD---------SAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-- 69 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTS---------GGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCccc---------ccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--
Confidence 4889999999999998 55666667665320 0012788999999999999 9999999999875
Q ss_pred hhhh-----------ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 009457 83 EIVK-----------IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS 151 (534)
Q Consensus 83 ~~~~-----------~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 151 (534)
.+.+ ..|..|.||||+|+..|+.+++++|+++++++ +..|..+.++ .+
T Consensus 70 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~--------------------~~ 128 (256)
T 2etb_A 70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQ--------------------KH 128 (256)
T ss_dssp HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGS--------------------CC
T ss_pred CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccccccc--------------------cc
Confidence 2222 12356888888888888888888888887776 4444441110 00
Q ss_pred cccccccCCCcHHHHHHHcCCHHHHHHHHh---cCCccceecCCCCchHHHHHHh--CCCHH-------HHHHhHhcCcc
Q 009457 152 CTRIVRKNGKTALHTAARYGLINIVTALID---RDPEIVTIKDKKGQTALHMAVK--GQCPS-------VVEYILSADHL 219 (534)
Q Consensus 152 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~g~~~-------iv~~Ll~~~~~ 219 (534)
....+..|.||||+|+..|+.+++++|++ .+++ ++.+|..|+||||+|+. .++.+ ++++|++. +.
T Consensus 129 -~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga 205 (256)
T 2etb_A 129 -QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GA 205 (256)
T ss_dssp -SSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HH
T ss_pred -ccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CC
Confidence 11122235555555555555555555555 4444 34555555555555555 44554 55555554 23
Q ss_pred cc-------ccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457 220 IL-------NERDKKGNTAVHIATRKCRPQIVSLLLSY 250 (534)
Q Consensus 220 ~i-------n~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 250 (534)
++ +.+|..|+||||+|+..|+.+++++|+++
T Consensus 206 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 33 55666666666666666666666666663
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.9e-31 Score=257.05 Aligned_cols=130 Identities=26% Similarity=0.321 Sum_probs=108.4
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCC-------------CCchHHHHHHhCCCHHHHHHhHhc--Cccccc
Q 009457 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDK-------------KGQTALHMAVKGQCPSVVEYILSA--DHLILN 222 (534)
Q Consensus 158 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~iv~~Ll~~--~~~~in 222 (534)
..|.||||+|+..|+.+++++|++.+++ ++..|. .|+||||+|+..|+.+++++|++. .+.++|
T Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n 166 (256)
T 2etb_A 88 YQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE 166 (256)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC
Confidence 4566666666666666666666666655 344444 399999999999999999999994 467789
Q ss_pred cccCCCChHHHHHHH--cCCHH-------HHHHHhccCCccc-------cccccCCCCHHHHHHHccCCCCHHHHHHHHH
Q 009457 223 ERDKKGNTAVHIATR--KCRPQ-------IVSLLLSYTSIDV-------NAINNQRETAMDLADKLQYGDSTLEIKEALA 286 (534)
Q Consensus 223 ~~d~~g~T~Lh~A~~--~~~~~-------iv~~Ll~~~g~~~-------~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~ 286 (534)
.+|.+|+||||+|+. .++.+ ++++|+++ |+++ +.+|..|+||||+|+. .++. +++++|+
T Consensus 167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~--~g~~--~~v~~Ll 241 (256)
T 2etb_A 167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAK--EGKI--EIFRHIL 241 (256)
T ss_dssp CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHH--TTCH--HHHHHHH
T ss_pred ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHH--hCCH--HHHHHHH
Confidence 999999999999998 78888 99999995 9999 9999999999999999 7777 9999999
Q ss_pred HcCCccc
Q 009457 287 EAGAKHA 293 (534)
Q Consensus 287 ~~ga~~~ 293 (534)
++|++..
T Consensus 242 ~~g~~~~ 248 (256)
T 2etb_A 242 QREFSGA 248 (256)
T ss_dssp HHHHHHH
T ss_pred hCCCCCC
Confidence 9998763
No 50
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.1e-32 Score=275.92 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=200.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc--
Q 009457 10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI-- 87 (534)
Q Consensus 10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~-- 87 (534)
.+.+|+| ....+++++|++++.+ ++..+..|.|+++ |+.++|+.|++.+ .+.+.
T Consensus 22 ~~~~~~~----~~~~dlv~~ll~~ga~-------------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g--~~~~~~~ 77 (327)
T 1sw6_A 22 RTAGPII----TFTHDLTSDFLSSPLK-------------IMKALPSPVVNDN-----EQKMKLEAFLQRL--LFPEIQE 77 (327)
T ss_dssp ---CCEE----ECCTTCCCSTTTSSCC-------------CEECBCCCCCCCH-----HHHHHHHHHHHHH--HC-----
T ss_pred ccccchh----hhcCchHHHHhhCCcc-------------cccCCCCCCcccC-----chhHHHHHHHHhc--cCCcccc
Confidence 3444555 4666789999998876 4678889999988 9999999999875 21111
Q ss_pred ---------------cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q 009457 88 ---------------RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSC 152 (534)
Q Consensus 88 ---------------~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 152 (534)
......+.+|+|+..+..+++++|++.+.++....|..|.||||+|+..|+.+++++|++.+++
T Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad- 156 (327)
T 1sw6_A 78 MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN- 156 (327)
T ss_dssp --------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred chHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-
Confidence 0111123458888888889999999999998433899999999999999999999999999988
Q ss_pred ccccccCCCcHHHHHHHcCC---HHHHHHHHhcCCccceecCCCCchHHHHHHh----CCCHHHHHHhHhcC--------
Q 009457 153 TRIVRKNGKTALHTAARYGL---INIVTALIDRDPEIVTIKDKKGQTALHMAVK----GQCPSVVEYILSAD-------- 217 (534)
Q Consensus 153 ~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~iv~~Ll~~~-------- 217 (534)
++.+|.+|+||||+|+..|+ .++++.|++.+...++.+|..|+||||+|+. .|+.+++++|++..
T Consensus 157 ~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~ 236 (327)
T 1sw6_A 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236 (327)
T ss_dssp TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG
T ss_pred CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999998 6888888887644468899999999999999 99999999999753
Q ss_pred -----------ccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHH
Q 009457 218 -----------HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALA 286 (534)
Q Consensus 218 -----------~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~ 286 (534)
+.+++.+|..|.||||.|+. +++|++. +++.+|..|+||||+|+. .++. +++++|+
T Consensus 237 ~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~--~g~~--~~v~~Ll 303 (327)
T 1sw6_A 237 NRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAAR--LGNI--SIVDALL 303 (327)
T ss_dssp GCCEEEC----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHH--HCCH--HHHHHHH
T ss_pred chHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHH--cCCH--HHHHHHH
Confidence 56779999999999999985 8889885 689999999999999999 7776 9999999
Q ss_pred HcCCccccccCChhhHHHHh
Q 009457 287 EAGAKHARYVGQVDEAMELK 306 (534)
Q Consensus 287 ~~ga~~~~~~~~~~~~~~~~ 306 (534)
+.|++....+..+.+++++.
T Consensus 304 ~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 304 DYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp HTTCCTTCCCTTSCCGGGGT
T ss_pred HcCCCCcccCCCCCCHHHHH
Confidence 99999988777777776653
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.7e-30 Score=231.66 Aligned_cols=157 Identities=27% Similarity=0.393 Sum_probs=97.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHH
Q 009457 95 TFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLIN 174 (534)
Q Consensus 95 ~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~ 174 (534)
+|+.|++.|+.++|+.|+++++++ +.+|..|.||||+|+..++.+++++|++.+++ .+.+|.+|+||||+|+..|+.+
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCHH
Confidence 466666666666666666666665 45566666666666666666666666666665 4456666666666666666666
Q ss_pred HHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcc
Q 009457 175 IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSID 254 (534)
Q Consensus 175 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~ 254 (534)
++++|++.+++ ++.+|..|+||||+|++.|+.+++++|++. +.+++.+|.+|+||||+|+..|+.+++++|+++ |++
T Consensus 85 ~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GA~ 161 (169)
T 4gpm_A 85 VVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-GGW 161 (169)
T ss_dssp HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence 66666666666 356666666666666666666666666664 344566666666666666666666666666663 555
Q ss_pred cc
Q 009457 255 VN 256 (534)
Q Consensus 255 ~~ 256 (534)
+.
T Consensus 162 ie 163 (169)
T 4gpm_A 162 LE 163 (169)
T ss_dssp --
T ss_pred cC
Confidence 53
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=4.2e-30 Score=231.29 Aligned_cols=156 Identities=23% Similarity=0.343 Sum_probs=91.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCC
Q 009457 13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSD 92 (534)
Q Consensus 13 t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g 92 (534)
++|+.||+.|+.++|+.||+.+.+ ++.+|..|.||||+|+..|+.++++.|++.+ .+++.+|..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g 70 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-------------VNASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDG 70 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCC
Confidence 346666666666666666665554 2445556666666666666666666666554 3445555566
Q ss_pred CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q 009457 93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL 172 (534)
Q Consensus 93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~ 172 (534)
+||||+|+..|+.+++++|+++++++ +.+|.+|.||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|++.|+
T Consensus 71 ~TpLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 71 RTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGN 148 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCC
Confidence 66666666666666666666666555 45555666666666666666666666666555 44555566666666666666
Q ss_pred HHHHHHHHhcCCc
Q 009457 173 INIVTALIDRDPE 185 (534)
Q Consensus 173 ~~iv~~Ll~~~~~ 185 (534)
.+++++|+++|++
T Consensus 149 ~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 149 EEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHCCCC
Confidence 6666666666555
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.9e-31 Score=255.46 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=123.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHH----hcCCCCCCCCcchHHHHHhcccCCCCcHHHHHH---HcCCHHHHHHHHhcC
Q 009457 8 RFITHQSFFSAVRSGDLETLKNIID----NLTKDEAPDGSSLVSELMAMQNDTGETALYISA---ANNFQDIFSCLLKFC 80 (534)
Q Consensus 8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~----~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa---~~g~~~iv~~Ll~~~ 80 (534)
+..+.|+||.|++.|+.+.++.|++ .+.+.... -...+..|.||||+|+ +.|+.+++++|++.+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~---------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE---------EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG---------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh---------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 5678999999999999997666666 66553210 0123477999999999 779999999999975
Q ss_pred Ch---------hhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCC--------------CCCCcHHHHHHHcC
Q 009457 81 DV---------EIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCD--------------SSNTSPLYSAAVQD 137 (534)
Q Consensus 81 ~~---------~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d--------------~~g~tpLh~Aa~~g 137 (534)
.. ......|..|.||||+|+..|+.+++++|+++++++ +..| ..|.||||+|+..|
T Consensus 73 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 151 (260)
T 3jxi_A 73 EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151 (260)
T ss_dssp HHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred ccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcC
Confidence 21 112223446778888888888888888888777776 3444 34555555555555
Q ss_pred CHHHHHHHHh---cCCCcccccccCCCcHHHHHHHcCC---------HHHHHHHHhcCCccc------eecCCCCchHHH
Q 009457 138 HLDVVNTILD---ADVSCTRIVRKNGKTALHTAARYGL---------INIVTALIDRDPEIV------TIKDKKGQTALH 199 (534)
Q Consensus 138 ~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~d~~g~t~Lh 199 (534)
+.+++++|++ .+++ .+.+|..|+||||+|+..|+ .+++++|++.++++. +.+|..|+||||
T Consensus 152 ~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~ 230 (260)
T 3jxi_A 152 QPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM 230 (260)
T ss_dssp CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred CHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHH
Confidence 5555555555 4444 34455555555555555544 455555555544420 234444555555
Q ss_pred HHHhCCCHHHHHHhHhc
Q 009457 200 MAVKGQCPSVVEYILSA 216 (534)
Q Consensus 200 ~A~~~g~~~iv~~Ll~~ 216 (534)
+|++.|+.+++++|+++
T Consensus 231 ~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 231 MAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 55555555555555443
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=8.6e-31 Score=253.04 Aligned_cols=131 Identities=24% Similarity=0.328 Sum_probs=91.4
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecC--------------CCCchHHHHHHhCCCHHHHHHhHhc--Ccc
Q 009457 156 VRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKD--------------KKGQTALHMAVKGQCPSVVEYILSA--DHL 219 (534)
Q Consensus 156 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~iv~~Ll~~--~~~ 219 (534)
.|..|.||||+|+..|+.+++++|++.+++ ++..+ ..|+||||+|+..|+.+++++|++. .+.
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 167 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 344666666666666666666666666666 35555 4677777777777777777777773 355
Q ss_pred ccccccCCCChHHHHHHHcCC---------HHHHHHHhccCCccc-------cccccCCCCHHHHHHHccCCCCHHHHHH
Q 009457 220 ILNERDKKGNTAVHIATRKCR---------PQIVSLLLSYTSIDV-------NAINNQRETAMDLADKLQYGDSTLEIKE 283 (534)
Q Consensus 220 ~in~~d~~g~T~Lh~A~~~~~---------~~iv~~Ll~~~g~~~-------~~~n~~g~t~L~lA~~~~~~~~~~~i~~ 283 (534)
+++.+|..|+||||+|+..++ .+++++|++. |+++ +.+|..|.||||+|+. .++. ++++
T Consensus 168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~--~g~~--~~v~ 242 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAK--TGKI--GIFQ 242 (260)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH--TTCH--HHHH
T ss_pred CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHH--cCCH--HHHH
Confidence 667777777777777777666 5777777774 6776 5677777777777777 6665 7777
Q ss_pred HHHHcCCcc
Q 009457 284 ALAEAGAKH 292 (534)
Q Consensus 284 ~L~~~ga~~ 292 (534)
+|+++|++.
T Consensus 243 ~Ll~~g~~~ 251 (260)
T 3jxi_A 243 HIIRREIAD 251 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhCCCc
Confidence 777777655
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=252.89 Aligned_cols=193 Identities=19% Similarity=0.248 Sum_probs=122.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH--
Q 009457 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA-- 134 (534)
Q Consensus 57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa-- 134 (534)
+.+++|.|+..|+.+.++.+++......++..|..|+||||+|+..|+.+++++|++.++...+..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 455666666666666666666554333355566666666666666666666666666666333556666666666666
Q ss_pred ---HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHH
Q 009457 135 ---VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE 211 (534)
Q Consensus 135 ---~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~ 211 (534)
..++.+++++|++.+.. ....+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 44566666666666644 344556666666666666666666666666666 3666666666666666666666666
Q ss_pred HhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccC
Q 009457 212 YILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT 251 (534)
Q Consensus 212 ~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~ 251 (534)
+|++..+.+++.+|.+|+||||+|+..|+.+++++|+++.
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 6666445555666666666666666666666666666643
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=245.94 Aligned_cols=192 Identities=18% Similarity=0.249 Sum_probs=176.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC
Q 009457 11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR 90 (534)
Q Consensus 11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 90 (534)
..+++|.|+..|+.+.++.+++... ...++..|..|.||||+|+..|+.++|++|++.+. .+++..+.
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~-----------~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~ 143 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLL-----------DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGV-CKVDKQNR 143 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHH-----------HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC-CCTTCCCT
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHH-----------hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CcCCCCCC
Confidence 4578899999999999999998764 45688999999999999999999999999999873 25778899
Q ss_pred CCCcHHHHHH-----HcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHH
Q 009457 91 SDMNTFHVAA-----KKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH 165 (534)
Q Consensus 91 ~g~t~Lh~Aa-----~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 165 (534)
.|.||||+|+ ..++.+++++|++.+... ...|..|.||||+|+..|+.+++++|++.+++ .+.+|.+|+||||
T Consensus 144 ~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh 221 (276)
T 4hbd_A 144 AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALM 221 (276)
T ss_dssp TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHH
Confidence 9999999999 678999999999999766 67788999999999999999999999999998 6789999999999
Q ss_pred HHHHcCCHHHHHHHHh-cCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC
Q 009457 166 TAARYGLINIVTALID-RDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217 (534)
Q Consensus 166 ~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 217 (534)
+|+..|+.+++++|++ .+++ ++.+|..|+||||+|+..|+.+++++|+++.
T Consensus 222 ~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 222 CACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999 7888 5889999999999999999999999999864
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=6.6e-29 Score=224.20 Aligned_cols=170 Identities=24% Similarity=0.288 Sum_probs=121.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457 92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171 (534)
Q Consensus 92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 171 (534)
+.||||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 356777777777777777777777765566777777777777777777777777777766 5566777777777777777
Q ss_pred CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccC
Q 009457 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT 251 (534)
Q Consensus 172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~ 251 (534)
+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~- 157 (172)
T 3v30_A 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENH- 157 (172)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH-
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH-
Confidence 77777777777777 467777777888888877788888877775 455677777788888888888888888888774
Q ss_pred CccccccccCCCCH
Q 009457 252 SIDVNAINNQRETA 265 (534)
Q Consensus 252 g~~~~~~n~~g~t~ 265 (534)
++++...|..|.||
T Consensus 158 ~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHSCC-------
T ss_pred HHHHhcccCCCCCC
Confidence 77777777777665
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.5e-28 Score=226.16 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=86.8
Q ss_pred HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcH
Q 009457 50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP 129 (534)
Q Consensus 50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp 129 (534)
++.+|..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 104 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTP 104 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcH
Confidence 4445555555555555555555555555543 234444555555555555555555555555555554 3445555555
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHH
Q 009457 130 LYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSV 209 (534)
Q Consensus 130 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i 209 (534)
||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHH
Confidence 5555555555555555555544 344455555555555555555555555555554 34455555555555555555555
Q ss_pred HHHhHh
Q 009457 210 VEYILS 215 (534)
Q Consensus 210 v~~Ll~ 215 (534)
+++|++
T Consensus 183 v~~Ll~ 188 (192)
T 2rfm_A 183 IKIFTE 188 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.6e-28 Score=220.32 Aligned_cols=169 Identities=22% Similarity=0.194 Sum_probs=88.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC
Q 009457 58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137 (534)
Q Consensus 58 ~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g 137 (534)
.||||.|+..|+.++++.|++.+. ..++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGD-NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCS-GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCc-ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 345555555555555555555432 224444555555555555555555555555555554 444555555555555555
Q ss_pred CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC
Q 009457 138 HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217 (534)
Q Consensus 138 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 217 (534)
+.+++++|++.+.+ .+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 55555555555555 344555555555555555555555555555555 3555555555565555555555555555542
Q ss_pred ccccccccCCCChH
Q 009457 218 HLILNERDKKGNTA 231 (534)
Q Consensus 218 ~~~in~~d~~g~T~ 231 (534)
..+...+..|.||
T Consensus 159 -~~~~~~~~~~~~p 171 (172)
T 3v30_A 159 -LKLFQSNLVPADP 171 (172)
T ss_dssp -HHHSCC-------
T ss_pred -HHHhcccCCCCCC
Confidence 2234444444443
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=4.2e-28 Score=216.48 Aligned_cols=154 Identities=23% Similarity=0.237 Sum_probs=73.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC
Q 009457 58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137 (534)
Q Consensus 58 ~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g 137 (534)
.||||.|+..|+.+++++|++.+ .+++..+..|+||||+|+. |+.+++++|++.++++ +..|..|.||||+|+..|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred hhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 34444444444444444444433 2233444444444444444 4444444444444444 334444445555555444
Q ss_pred CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457 138 HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216 (534)
Q Consensus 138 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ 216 (534)
+.+++++|++.+.+ .+.+|.+|.||||+|++.|+.+++++|++.+++.++..|..|+||||+|+..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 82 FLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 45555555444444 3344444555555555555555555555544443344444455555555555555555555443
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=4.9e-28 Score=216.04 Aligned_cols=159 Identities=23% Similarity=0.348 Sum_probs=138.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457 91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY 170 (534)
Q Consensus 91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 170 (534)
...||||.|+..|+.+++++|++.++++ +..|..|.||||+|+. |+.+++++|++.+.+ .+.+|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence 4568999999999999999999988887 6778899999999988 999999999998877 567888899999999999
Q ss_pred CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250 (534)
Q Consensus 171 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 250 (534)
|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+...++.+|..|.||||+|+..|+.+++++|+++
T Consensus 81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 999999999999888 5788889999999999999999999999887766788899999999999999999999999885
Q ss_pred CCcc
Q 009457 251 TSID 254 (534)
Q Consensus 251 ~g~~ 254 (534)
|++
T Consensus 160 -GAd 162 (162)
T 1ihb_A 160 -GAG 162 (162)
T ss_dssp -C--
T ss_pred -CCC
Confidence 653
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=6.4e-28 Score=221.85 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=136.2
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457 85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL 164 (534)
Q Consensus 85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 164 (534)
.+.+|..|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.|||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHH
Confidence 4557788888999999888888899888888776 66788888888888888888888888888877 567788888888
Q ss_pred HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV 244 (534)
Q Consensus 165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv 244 (534)
|+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence 888888888888888888887 477888888888888888888888888886 556688888888888888888888888
Q ss_pred HHHhcc
Q 009457 245 SLLLSY 250 (534)
Q Consensus 245 ~~Ll~~ 250 (534)
++|+++
T Consensus 184 ~~Ll~~ 189 (192)
T 2rfm_A 184 KIFTEV 189 (192)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888874
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=7.9e-28 Score=215.98 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=93.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccC
Q 009457 10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRS 89 (534)
Q Consensus 10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 89 (534)
.|.||||.|++.|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .+++..+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~ 66 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADPQLLG 66 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCcC
Confidence 355666666666666666666665443 3345556666666666666666666666654 3344555
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457 90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR 169 (534)
Q Consensus 90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 169 (534)
..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+.
T Consensus 67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 144 (167)
T 3v31_A 67 KGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVA 144 (167)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 55666666666666666666666665555 44555566666666666666666666665555 34455556666666666
Q ss_pred cCCHHHHHHHHhcCCc
Q 009457 170 YGLINIVTALIDRDPE 185 (534)
Q Consensus 170 ~g~~~iv~~Ll~~~~~ 185 (534)
.|+.+++++|++++++
T Consensus 145 ~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 145 LGYRSVQQVIESHLLK 160 (167)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHH
Confidence 6666666666555443
No 64
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=6.7e-31 Score=266.31 Aligned_cols=236 Identities=18% Similarity=0.224 Sum_probs=135.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCh-hhhh
Q 009457 8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDV-EIVK 86 (534)
Q Consensus 8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~ 86 (534)
+.++.||||.|++.|+.++|+.|++.+.... .....|..|.||||+|+..|+.++|++|++++.. ...+
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~----------~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~ 158 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDE----------IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCS----------SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHH----------HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc
Confidence 4455677777777777777777777665211 0112334456777777777777777777777621 1112
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccc-cCCCCCCcHHHHHH-HcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457 87 IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK-SCDSSNTSPLYSAA-VQDHLDVVNTILDADVSCTRIVRKNGKTAL 164 (534)
Q Consensus 87 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~-~~d~~g~tpLh~Aa-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 164 (534)
..+.+ .||||+|+..|+.+++++|+++++++.. ..|..|.||||+|+ ..|+.+++++|++.++ .|.|||
T Consensus 159 i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL 229 (376)
T 2aja_A 159 IQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAE 229 (376)
T ss_dssp HSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHH
T ss_pred cCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHH
Confidence 22222 7777777777777777777777776522 14666777777777 7777777777777442 266777
Q ss_pred HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHH---------------------------HHHHhHhcC
Q 009457 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPS---------------------------VVEYILSAD 217 (534)
Q Consensus 165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~---------------------------iv~~Ll~~~ 217 (534)
|.|+..|+.+++++|++.+++. +..+ ++++.|+.+|+.+ .+++|++..
T Consensus 230 ~~Aa~~g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~ 304 (376)
T 2aja_A 230 IHEFEYGEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304 (376)
T ss_dssp HCTTTTTTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred HHHHHCCCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhCh
Confidence 7777777777777777776553 2221 2444555444444 223333211
Q ss_pred cc--c--cccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457 218 HL--I--LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 218 ~~--~--in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~ 271 (534)
.. . ....++.++||||+|+..|+.+++++|++. | ...+..|+|++++|..
T Consensus 305 ~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~-~---~v~~~~~~~~~~~~~~ 358 (376)
T 2aja_A 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-P---SVLALTKANNYYINET 358 (376)
T ss_dssp TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS-H---HHHHSCC---------
T ss_pred hhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC-h---HHHHHHHHhccccccc
Confidence 00 0 011233466777777777777777777764 2 4566677777777765
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=9e-28 Score=215.62 Aligned_cols=154 Identities=21% Similarity=0.260 Sum_probs=76.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457 92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171 (534)
Q Consensus 92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 171 (534)
|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcC
Confidence 444555555555555555555444443 34444455555555555555555555554444 3344444555555555555
Q ss_pred CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhc
Q 009457 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249 (534)
Q Consensus 172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 249 (534)
+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 81 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 55555555555444 244455555555555555555555555543 33344455555555555555555555555554
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=2.6e-27 Score=213.26 Aligned_cols=157 Identities=25% Similarity=0.360 Sum_probs=97.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009457 55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA 134 (534)
Q Consensus 55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa 134 (534)
..+.|||+.|++.|+.++|++|++.+ .+++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAA 88 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence 34456666666666666666666654 334555566666666666666666666666666555 455566666666666
Q ss_pred HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457 135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214 (534)
Q Consensus 135 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll 214 (534)
..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|++.|+.+++++|+
T Consensus 89 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 66666666666666655 445566666666666666666666666666665 3556666666666666666666666666
Q ss_pred hc
Q 009457 215 SA 216 (534)
Q Consensus 215 ~~ 216 (534)
+.
T Consensus 167 ~~ 168 (169)
T 2y1l_E 167 KL 168 (169)
T ss_dssp TC
T ss_pred Hc
Confidence 53
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=3.7e-27 Score=212.21 Aligned_cols=159 Identities=26% Similarity=0.356 Sum_probs=147.6
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457 88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167 (534)
Q Consensus 88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 167 (534)
....+.++||.|++.|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLA 87 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence 4566789999999999999999999999988 67899999999999999999999999999988 677899999999999
Q ss_pred HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247 (534)
Q Consensus 168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L 247 (534)
+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|
T Consensus 88 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 999999999999999998 588999999999999999999999999997 566799999999999999999999999999
Q ss_pred hcc
Q 009457 248 LSY 250 (534)
Q Consensus 248 l~~ 250 (534)
+++
T Consensus 166 ~~~ 168 (169)
T 2y1l_E 166 QKL 168 (169)
T ss_dssp HTC
T ss_pred HHc
Confidence 985
No 68
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.6e-30 Score=246.49 Aligned_cols=187 Identities=16% Similarity=0.089 Sum_probs=117.9
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457 53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS 132 (534)
Q Consensus 53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~ 132 (534)
.+..|.||||.|+..|+.++|++|++.+ .+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~ 93 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHC 93 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence 3455666777777777777777777665 345566666777777777777777777777776665 5556667777777
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH--HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHH
Q 009457 133 AAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA--ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVV 210 (534)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv 210 (534)
|+..|+.+++++|++.+++.....+.+|.||||+| +..|+.+++++|++.+++ ++..|..|.||+|.++..+..
T Consensus 94 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~--- 169 (229)
T 2vge_A 94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD--- 169 (229)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---
T ss_pred HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---
Confidence 77777777777777766663322235677777776 666777777777776666 355666666666654443322
Q ss_pred HHhHhcCcc-ccccccCCCChHHHHHHHcCCHHHHHH
Q 009457 211 EYILSADHL-ILNERDKKGNTAVHIATRKCRPQIVSL 246 (534)
Q Consensus 211 ~~Ll~~~~~-~in~~d~~g~T~Lh~A~~~~~~~iv~~ 246 (534)
++|++.+.. .++.+|.+|+||||+|+..|+.++++.
T Consensus 170 ~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 170 ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred ccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 344443222 145666666666666666666666544
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.1e-26 Score=205.51 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=79.6
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCC
Q 009457 12 HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRS 91 (534)
Q Consensus 12 ~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 91 (534)
.|+||.|++.|+.++++.|++.+.+.. .+..|.||||+|+..|+.+++++|++.+ .+++..+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~ 66 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--------------TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKV 66 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--------------CCTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTT
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--------------cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCC
Confidence 355555555555555555555554311 2445555555555555555555555544 334444555
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457 92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171 (534)
Q Consensus 92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 171 (534)
|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|
T Consensus 67 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~ 144 (153)
T 1awc_B 67 DRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNG 144 (153)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcC
Confidence 555555555555555555555555554 34455555555555555555555555555544 3344555555555555555
Q ss_pred CHHHHHHH
Q 009457 172 LINIVTAL 179 (534)
Q Consensus 172 ~~~iv~~L 179 (534)
+.+++++|
T Consensus 145 ~~~i~~~L 152 (153)
T 1awc_B 145 NEDLAEIL 152 (153)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 55555543
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=3.1e-27 Score=214.73 Aligned_cols=164 Identities=19% Similarity=0.211 Sum_probs=83.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457 92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171 (534)
Q Consensus 92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 171 (534)
+.++||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence 445555555555555555555554443344455555555555555555555555555544 3344555555555555555
Q ss_pred CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccC
Q 009457 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT 251 (534)
Q Consensus 172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~ 251 (534)
+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|++.
T Consensus 84 ~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~- 160 (179)
T 3f6q_A 84 HRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKM- 160 (179)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh-
Confidence 55555555555554 244455555555555555555555555543 333455555555555555555555555555552
Q ss_pred Cccccccc
Q 009457 252 SIDVNAIN 259 (534)
Q Consensus 252 g~~~~~~n 259 (534)
|++++..+
T Consensus 161 g~~~~~~~ 168 (179)
T 3f6q_A 161 GQNLNRIP 168 (179)
T ss_dssp TCCCSCBC
T ss_pred hcCcccCC
Confidence 44444433
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1e-26 Score=205.66 Aligned_cols=150 Identities=29% Similarity=0.298 Sum_probs=89.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q 009457 93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL 172 (534)
Q Consensus 93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~ 172 (534)
.|+||.|+..|+.+++++|++.+++.. .|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence 355666666666666666666555442 355566666666666666666666665555 34455556666666666666
Q ss_pred HHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457 173 INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247 (534)
Q Consensus 173 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L 247 (534)
.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 6666666666555 355566666666666666666666666654 344456666666666666666666666554
No 72
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=7.6e-27 Score=206.96 Aligned_cols=152 Identities=20% Similarity=0.335 Sum_probs=83.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q 009457 93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL 172 (534)
Q Consensus 93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~ 172 (534)
.||||.|+..|+.+++++|++..+...+..|..|.||||+ +..|+.+++++|++.+++ .+.+|..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCc
Confidence 3455555555555555555555222224445555555555 555555555555555554 34455555555555555555
Q ss_pred HHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhc
Q 009457 173 INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249 (534)
Q Consensus 173 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 249 (534)
.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. .+++.+|.+|.||||+|+..|+.+++++|++
T Consensus 81 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 81 LDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 5555555555555 355555555555555555555555555554 4445555556666666666666666655554
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=8.9e-27 Score=206.53 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=143.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136 (534)
Q Consensus 57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~ 136 (534)
|.||||.|+..|+.+++++|++. ...+++..+..|.||||+ +..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 56999999999999999999998 334677889999999999 9999999999999999988 77899999999999999
Q ss_pred CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216 (534)
Q Consensus 137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ 216 (534)
|+.+++++|++.+++ .+.+|.+|.||||+|+..|+.+++++|++. ++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 79 GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999988 678899999999999999999999999999 66 588999999999999999999999999874
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=3.5e-27 Score=211.29 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=104.6
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457 54 NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA 133 (534)
Q Consensus 54 n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A 133 (534)
|.+|.||||.|++.|+.++++.|++.+. ......+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 4556667777777777777777666432 234445556667777777777777777777766665 55566677777777
Q ss_pred HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457 134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213 (534)
Q Consensus 134 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L 213 (534)
+..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|++ ++.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHH
Confidence 777777777777776666 455666677777777777777777777777666 46667777777777555 666777777
Q ss_pred Hhc
Q 009457 214 LSA 216 (534)
Q Consensus 214 l~~ 216 (534)
++.
T Consensus 160 ~~~ 162 (165)
T 3twr_A 160 RGD 162 (165)
T ss_dssp HTC
T ss_pred hhc
Confidence 664
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.1e-29 Score=238.74 Aligned_cols=192 Identities=16% Similarity=0.100 Sum_probs=168.5
Q ss_pred cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh
Q 009457 4 LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE 83 (534)
Q Consensus 4 ~~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~ 83 (534)
....+.++.||||.|++.|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+ .
T Consensus 14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g--a 78 (229)
T 2vge_A 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMND-------------PSQPNEEGITALHNAICGANYSIVDFLITAG--A 78 (229)
T ss_dssp CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--C
T ss_pred ccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--C
Confidence 345677888999999999999999999999876 4568899999999999999999999999987 6
Q ss_pred hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH--HHcCCHHHHHHHHhcCCCcccccccCCC
Q 009457 84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA--AVQDHLDVVNTILDADVSCTRIVRKNGK 161 (534)
Q Consensus 84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 161 (534)
+++..|..|.||||+|+..|+.+++++|++.++++....+..|.||||+| +..|+.+++++|++.+++ .+..|..|.
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~ 157 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAV 157 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCch
Confidence 67888999999999999999999999999999998544457999999999 999999999999999988 667889999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCcc-ceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457 162 TALHTAARYGLINIVTALIDRDPEI-VTIKDKKGQTALHMAVKGQCPSVVEYIL 214 (534)
Q Consensus 162 tpLh~A~~~g~~~iv~~Ll~~~~~~-~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll 214 (534)
||++.++..+. .+.|++.+++. ++.+|..|+||||+|+..|+.++|+..+
T Consensus 158 ~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 158 YALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp EESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred HHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 99997665543 36778888763 4678999999999999999999987654
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=6.4e-27 Score=209.59 Aligned_cols=159 Identities=22% Similarity=0.303 Sum_probs=146.8
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457 88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167 (534)
Q Consensus 88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 167 (534)
.|..|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHH
Confidence 4677899999999999999999999987766677888999999999999999999999999988 678899999999999
Q ss_pred HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247 (534)
Q Consensus 168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L 247 (534)
+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++.+|.+|+||||+|.. ++.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence 999999999999999998 588999999999999999999999999997 56679999999999999877 899999999
Q ss_pred hcc
Q 009457 248 LSY 250 (534)
Q Consensus 248 l~~ 250 (534)
++.
T Consensus 160 ~~~ 162 (165)
T 3twr_A 160 RGD 162 (165)
T ss_dssp HTC
T ss_pred hhc
Confidence 985
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=1.3e-26 Score=210.67 Aligned_cols=159 Identities=17% Similarity=0.237 Sum_probs=80.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC
Q 009457 11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR 90 (534)
Q Consensus 11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 90 (534)
+.++||.|++.|+.++++.|++..+.. ++..+..|.||||+|+..|+.+++++|++.+ .+++..+.
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~ 70 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTEND------------LNQGDDHGFSPLHWACREGRSAVVEMLIMRG--ARINVMNR 70 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCccc------------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCCcCC
Confidence 445555555555555555555543221 2334445555555555555555555555544 33444455
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457 91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY 170 (534)
Q Consensus 91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 170 (534)
.|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..
T Consensus 71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~ 148 (179)
T 3f6q_A 71 GDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAP 148 (179)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHH
Confidence 5555555555555555555555555544 34445555555555555555555555555544 344455555555555555
Q ss_pred CCHHHHHHHHhcCCc
Q 009457 171 GLINIVTALIDRDPE 185 (534)
Q Consensus 171 g~~~iv~~Ll~~~~~ 185 (534)
++.+++++|++.+++
T Consensus 149 ~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 149 LRELLRERAEKMGQN 163 (179)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhcC
Confidence 555555555555544
No 78
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=9.1e-29 Score=250.63 Aligned_cols=238 Identities=18% Similarity=0.179 Sum_probs=174.9
Q ss_pred HHHHHHH-cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh-hhhccCCC
Q 009457 14 SFFSAVR-SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE-IVKIRSRS 91 (534)
Q Consensus 14 ~Lh~Aa~-~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~ 91 (534)
.++.|.. .++.+.++.+++++ .++.||||+|++.|+.++|++|++.+... .....+..
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g--------------------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~ 127 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKG--------------------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 127 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHT--------------------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH
T ss_pred HHHHHHhcCCCHHHHHHHHHcC--------------------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccC
Confidence 4555544 35555555555544 44569999999999999999999987422 11234556
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCccc--cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc--cccCCCcHHHHH
Q 009457 92 DMNTFHVAAKKGHLGIAKELVSIWPEL--CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRI--VRKNGKTALHTA 167 (534)
Q Consensus 92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l--~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~--~d~~g~tpLh~A 167 (534)
|.||||+|+..|+.+++++|++++++. .+..+.+ .||||+|+..|+.+++++|++++++ .+. .|..|.||||+|
T Consensus 128 ~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~A 205 (376)
T 2aja_A 128 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWA 205 (376)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHH
Confidence 889999999999999999999999752 1222223 9999999999999999999999988 344 788899999999
Q ss_pred H-HcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCC------
Q 009457 168 A-RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR------ 240 (534)
Q Consensus 168 ~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~------ 240 (534)
+ ..|+.++|++|++.++ .|.||||.|+++|+.+++++|++.+ ..++..|. +++.|+.+|+
T Consensus 206 a~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~g-a~~~~~~~----~l~~A~~~g~~~vv~~ 272 (376)
T 2aja_A 206 AVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHV-NRLKEMHD----AFKLSNPDGVFDLVTK 272 (376)
T ss_dssp HSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHH-HHHHHHHT----TTTTTSSSSCCCCSSH
T ss_pred HHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcC-cccccccH----HHHHHHHCCChhhhcH
Confidence 9 9999999999998552 3889999999999999999999863 33343322 3333333332
Q ss_pred ---------------------HHHHHHHhccCCccc----cccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCC
Q 009457 241 ---------------------PQIVSLLLSYTSIDV----NAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290 (534)
Q Consensus 241 ---------------------~~iv~~Ll~~~g~~~----~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga 290 (534)
.+.+++|++..+++. ....+.+.||||+|+. .|+. +++++|++.|.
T Consensus 273 ~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~--~g~~--e~v~lLl~~~~ 343 (376)
T 2aja_A 273 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR--LGNQ--GACALLLSIPS 343 (376)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHH--HTCT--THHHHHTTSHH
T ss_pred HhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHH--cCcH--HHHHHHHcChH
Confidence 445666665433221 2234567799999999 7888 99999998654
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=6e-27 Score=223.35 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=114.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009457 55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA 134 (534)
Q Consensus 55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa 134 (534)
..|.||||.|+..|+.++++.|++++ .+++. +..|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 46888888888888888888888887 33443 367888888888888888888888888876 677888888888888
Q ss_pred HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCc-hHHHHH--HhCCCHHHHH
Q 009457 135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQ-TALHMA--VKGQCPSVVE 211 (534)
Q Consensus 135 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~g~~~iv~ 211 (534)
..|+.+++++|++.+++ .+.+|.+|+||||+|+..|+.+++++|+++++++ +..+..|. ||||+| +..|+.++++
T Consensus 79 ~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHH
Confidence 88888888888888877 5678888888888888888888888888888884 66666665 888888 7788888888
Q ss_pred HhHhcCccccccc---------cCCCChHHHHHHHcCC
Q 009457 212 YILSADHLILNER---------DKKGNTAVHIATRKCR 240 (534)
Q Consensus 212 ~Ll~~~~~~in~~---------d~~g~T~Lh~A~~~~~ 240 (534)
+|++.+ ..++.. |..+.++++++...|.
T Consensus 157 ~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 157 FLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence 888753 333333 5556666666666554
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=6e-27 Score=223.39 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=129.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457 8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI 87 (534)
Q Consensus 8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~ 87 (534)
+..|.||||.|++.|+.+.++.|++++.+.+ .+..|.||||.|+..|+.++|++|++.+ .+++.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--------------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~ 65 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK--------------FNPLPLALLLDSSLEGEFDLVQRIIYEV--DDPSL 65 (239)
T ss_dssp -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT--SSCCC
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcc--------------cCchhhHHHHHHHHcCCHHHHHHHHHcC--CCCCC
Confidence 5679999999999999999999999987632 3467899999999999999999999987 46788
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC-cHHHH
Q 009457 88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGK-TALHT 166 (534)
Q Consensus 88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~ 166 (534)
.|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++++++ .+..+..|. ||||+
T Consensus 66 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~ 143 (239)
T 1ycs_B 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADK 143 (239)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHH
Confidence 8999999999999999999999999999998 78899999999999999999999999999998 456676666 99999
Q ss_pred H--HHcCCHHHHHHHHhcCCccceec---------CCCCchHHHHHHhCCC
Q 009457 167 A--ARYGLINIVTALIDRDPEIVTIK---------DKKGQTALHMAVKGQC 206 (534)
Q Consensus 167 A--~~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~t~Lh~A~~~g~ 206 (534)
| +..|+.+++++|++.+++. +.. +..++++++++.+.|.
T Consensus 144 a~~~~~g~~~~~~~Ll~~~a~~-~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 144 CEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CCSSSTTCCCHHHHHHHHHHHT-TTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHhhhccHHHHHHHHHhhhcc-cccccceEEEEeccCCCCCCcccccCCC
Confidence 9 7889999999999987763 333 6678888888887775
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=2.4e-24 Score=191.06 Aligned_cols=145 Identities=18% Similarity=0.188 Sum_probs=100.3
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCch-HHH
Q 009457 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT-ALH 199 (534)
Q Consensus 121 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~Lh 199 (534)
..+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+ .|+.+++++|++.+++ ++.+|..|+| |||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVH 83 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHH
Confidence 4466778888888888888888888887766 5667778888888874 7888888888888877 4777888888 888
Q ss_pred HHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHH
Q 009457 200 MAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLAD 270 (534)
Q Consensus 200 ~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~ 270 (534)
+|+..|+.+++++|+++ +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.||.+-+.
T Consensus 84 ~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C------------------
T ss_pred HHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccCC
Confidence 88888888888888886 456688888888888888888888888888884 8888888888888876443
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=8.8e-25 Score=199.74 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=87.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccccccCCCcHHHHHH
Q 009457 93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHL----DVVNTILDADVSCTRIVRKNGKTALHTAA 168 (534)
Q Consensus 93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 168 (534)
.++|+.|++.|+.+.++.+++.+++. ..|..|.||||+|+..|+. +++++|++.|++ ++.+|.+|+||||+|+
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLF 83 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence 34555555555555555555544332 1124455555555555543 355555555555 4455555666666655
Q ss_pred HcCC------HHHHHHHHhcCCccceecCCCCc-hHHHHHHhCCC-----HHHHHHhHhcCccccccccCCCChHHHHHH
Q 009457 169 RYGL------INIVTALIDRDPEIVTIKDKKGQ-TALHMAVKGQC-----PSVVEYILSADHLILNERDKKGNTAVHIAT 236 (534)
Q Consensus 169 ~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g~-----~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~ 236 (534)
..|+ .+++++|+++|++ ++.+|..|+ ||||+|+..+. .+++++|++..+.+++.+|..|.||||+|+
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence 5554 4556666666666 366666666 66666666332 346666665334555666666666666666
Q ss_pred HcCCHHHHHHHhcc
Q 009457 237 RKCRPQIVSLLLSY 250 (534)
Q Consensus 237 ~~~~~~iv~~Ll~~ 250 (534)
..++.+++++|..+
T Consensus 163 ~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 163 RCQKPIALKMMEDY 176 (186)
T ss_dssp TTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 66666666666653
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=3.8e-24 Score=189.78 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=68.1
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCc-HHH
Q 009457 53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS-PLY 131 (534)
Q Consensus 53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~t-pLh 131 (534)
.+..|.||||+|+..|+.++|++|++.+ .+++..+..|+||||+|+ .|+.+++++|+++++++ +..|..|.| |||
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH 83 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence 3445555555555555555555555554 334445555555555553 55555555555555554 444555555 555
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHH
Q 009457 132 SAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALH 199 (534)
Q Consensus 132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh 199 (534)
+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|++++++ ++.++..|.||.+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAAE 149 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCcccc
Confidence 55555555555555555554 344555555555555555555555555555555 3445555555443
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=6.5e-24 Score=183.67 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=77.0
Q ss_pred hcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCC-CCcH
Q 009457 51 AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSS-NTSP 129 (534)
Q Consensus 51 ~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~-g~tp 129 (534)
+..+..|.||||+|+..|+.+++++|++.+ .+++..+..|+||||+|+. |+.+++++|+++++++ +..|.. |.||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~ 81 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRP 81 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCH
Confidence 445556666666666666666666666654 3445555666666666666 6666666666666555 444555 5666
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457 130 LYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184 (534)
Q Consensus 130 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 184 (534)
||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|+++++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 6666666666666666666555 44555566666666666666666666665544
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=3.7e-24 Score=195.55 Aligned_cols=150 Identities=16% Similarity=0.143 Sum_probs=84.5
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCChhhhhccC-CCCCcHHHHHHHcCCH----HHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457 59 TALYISAANNFQDIFSCLLKFCDVEIVKIRS-RSDMNTFHVAAKKGHL----GIAKELVSIWPELCKSCDSSNTSPLYSA 133 (534)
Q Consensus 59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~----~iv~~Ll~~~~~l~~~~d~~g~tpLh~A 133 (534)
++|+.|++.|+.+.++.+++.+. +..+ ..|+||||+|+..|+. +++++|+++|+++ +.+|..|+||||+|
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 44555555555555555554321 1112 3455555555555543 3555555555555 44455555555555
Q ss_pred HHcCC------HHHHHHHHhcCCCcccccccCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCccceecCCCCchHHHH
Q 009457 134 AVQDH------LDVVNTILDADVSCTRIVRKNGK-TALHTAARYG-----LINIVTALID-RDPEIVTIKDKKGQTALHM 200 (534)
Q Consensus 134 a~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~ 200 (534)
+..|+ .+++++|+++|++ ++.+|..|. ||||+|+..+ +.+++++|++ .+++ ++.+|..|+||||+
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~G~TpL~~ 160 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEF 160 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTTSCCHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCCCCCHHHH
Confidence 55554 4556666666665 455666666 6666666633 3446666666 6666 36666666666666
Q ss_pred HHhCCCHHHHHHhHh
Q 009457 201 AVKGQCPSVVEYILS 215 (534)
Q Consensus 201 A~~~g~~~iv~~Ll~ 215 (534)
|++.|+.+++++|.+
T Consensus 161 A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 161 VKRCQKPIALKMMED 175 (186)
T ss_dssp HHTTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 666666666666665
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=1.3e-23 Score=181.77 Aligned_cols=126 Identities=14% Similarity=0.229 Sum_probs=61.0
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCcHH
Q 009457 86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKN-GKTAL 164 (534)
Q Consensus 86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-g~tpL 164 (534)
+..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+. |+.+++++|++.+++ .+.+|.. |.|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCHH
Confidence 334445555555555555555555555554444 3444445555555555 555555555554444 3334444 44555
Q ss_pred HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS 215 (534)
Q Consensus 165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~ 215 (534)
|+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~ 132 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 555544444555544444444 24444444444444444444444444444
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=2.7e-22 Score=170.28 Aligned_cols=124 Identities=31% Similarity=0.494 Sum_probs=67.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457 57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136 (534)
Q Consensus 57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~ 136 (534)
|.||||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence 555555555555555555555554 233444555555555555555555555555555554 34455555555555555
Q ss_pred CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184 (534)
Q Consensus 137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 184 (534)
|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|+++++
T Consensus 79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 555555555555544 33445555555555555555555555555543
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=2.3e-22 Score=173.89 Aligned_cols=122 Identities=21% Similarity=0.253 Sum_probs=61.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHH
Q 009457 56 TGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAV 135 (534)
Q Consensus 56 ~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~ 135 (534)
.|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+.
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF 89 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 3445555555555555555555543 333444455555555555555555555555555444 3444455555555555
Q ss_pred cCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHh
Q 009457 136 QDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALID 181 (534)
Q Consensus 136 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 181 (534)
.|+.+++++|++.+++ .+..|.+|.||||+|+..|+.+++++|++
T Consensus 90 ~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 90 IGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 5555555555555444 33444455555555555555555555544
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=2e-22 Score=174.22 Aligned_cols=123 Identities=24% Similarity=0.353 Sum_probs=77.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457 90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR 169 (534)
Q Consensus 90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 169 (534)
..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..|.+|.||||+|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence 34566666666666666666666666655 45566666666666666666666666666655 44556666666666666
Q ss_pred cCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457 170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS 215 (534)
Q Consensus 170 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~ 215 (534)
.|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++
T Consensus 90 ~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 90 IGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 6666666666666655 35556666666666666666666666655
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=5.4e-22 Score=168.37 Aligned_cols=123 Identities=36% Similarity=0.567 Sum_probs=75.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457 91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY 170 (534)
Q Consensus 91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 170 (534)
+|+||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence 3566666666666666666666666655 44556666666666666666666666666555 344555666666666666
Q ss_pred CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216 (534)
Q Consensus 171 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ 216 (534)
|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 666666666666555 355555566666666666666666666554
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=8.9e-24 Score=202.00 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=133.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009457 55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA 134 (534)
Q Consensus 55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa 134 (534)
..+.+++.+++..|+.+.+..+.... .+ .+..|.||||.|+..|+.++++.|++ +.++ +..|..|.||||+|+
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~--~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~ 85 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIA--AD---VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA 85 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSC--HH---HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred CCCccHHHHHHHcCCCcccccccccc--cc---cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence 34556667777777666555444332 11 23568899999999999999999998 7666 677888999999999
Q ss_pred HcCCHHHHHHHHhcCCCcccccc-cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457 135 VQDHLDVVNTILDADVSCTRIVR-KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213 (534)
Q Consensus 135 ~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L 213 (534)
..|+.+++++|++.+++ .+.++ ..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++
T Consensus 86 ~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~------- 156 (244)
T 3ui2_A 86 GLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK------- 156 (244)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT-------
T ss_pred HCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh-------
Confidence 99999999999998888 44455 7899999999999999999999999888 58888999999999985221
Q ss_pred HhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457 214 LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250 (534)
Q Consensus 214 l~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 250 (534)
+..+.||||+|+..|+.+++++|++.
T Consensus 157 -----------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 157 -----------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp -----------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 24578999999999999999999874
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=3.1e-22 Score=182.46 Aligned_cols=141 Identities=16% Similarity=0.084 Sum_probs=99.9
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457 53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS 132 (534)
Q Consensus 53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~ 132 (534)
.+..|.||||.|+..|+.++++.|++ + .+++..|..|.||||+|+..|+.+++++|+++++++....+..|.||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 35567788888888888888888877 3 45666777778888888888888888888877777633323677777777
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHH
Q 009457 133 AAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEY 212 (534)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~ 212 (534)
|+..|+.+++++|++.+++ .+.+|.+|.||||+|++.++. ..+.++|++|+..|+.+++++
T Consensus 117 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~ 177 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINV 177 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHH
Confidence 7777777777777777766 556777777777777654321 234567777777777777777
Q ss_pred hHh
Q 009457 213 ILS 215 (534)
Q Consensus 213 Ll~ 215 (534)
|.+
T Consensus 178 L~~ 180 (183)
T 3deo_A 178 LEG 180 (183)
T ss_dssp HHT
T ss_pred HHH
Confidence 664
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=4.1e-22 Score=181.62 Aligned_cols=140 Identities=20% Similarity=0.243 Sum_probs=124.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCcHHHHH
Q 009457 89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVR-KNGKTALHTA 167 (534)
Q Consensus 89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A 167 (534)
+..|.||||.|+..|+.++++.|++ +.++ +..|..|.||||+|+..|+.+++++|++.+++ .+.++ .+|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHH
Confidence 4578999999999999999999999 7776 77899999999999999999999999999988 45566 8899999999
Q ss_pred HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247 (534)
Q Consensus 168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L 247 (534)
+..|+.+++++|++++++ ++.+|..|+||||+|++.++. ..+.++|++|+..|+.+++++|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence 999999999999999998 588999999999999874322 3467999999999999999999
Q ss_pred hcc
Q 009457 248 LSY 250 (534)
Q Consensus 248 l~~ 250 (534)
.++
T Consensus 179 ~~~ 181 (183)
T 3deo_A 179 EGQ 181 (183)
T ss_dssp HTC
T ss_pred HHh
Confidence 763
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=191.36 Aligned_cols=141 Identities=19% Similarity=0.142 Sum_probs=103.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCcccccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCcH
Q 009457 92 DMNTFHVAAKKGHLGIAKELVSIWPELCKS-----CDSSNTSPLYSAAVQ---DHLDVVNTILDADVSCTRIVRKNGKTA 163 (534)
Q Consensus 92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~-----~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tp 163 (534)
+.++||.|+..|+.+.++.|++.++++... .|..|.||||+|+.. |+.+++++|++.+++ .+.+|.+|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence 456788888888888888888887776332 577788888888876 778888888888777 56677888888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCH
Q 009457 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241 (534)
Q Consensus 164 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~ 241 (534)
||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+.. .|.||||+|+..|+.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence 8888888888888888888877 477888888888888888888888888875432 477888888877653
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=4e-22 Score=190.52 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=127.8
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHH
Q 009457 52 MQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLY 131 (534)
Q Consensus 52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh 131 (534)
..+..|.||||.|+..|+.++++.|++ + .+++..|..|.||||+|+..|+.+++++|+++++++....+..|.||||
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 40 DVVSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence 345679999999999999999999999 5 5678889999999999999999999999999999984443488999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHH
Q 009457 132 SAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE 211 (534)
Q Consensus 132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~ 211 (534)
+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..++ ...+.||||+|+..|+.++++
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~ 177 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVIN 177 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHH
Confidence 99999999999999999988 67899999999999986322 256789999999999999999
Q ss_pred HhHhc
Q 009457 212 YILSA 216 (534)
Q Consensus 212 ~Ll~~ 216 (534)
+|++.
T Consensus 178 ~L~~~ 182 (244)
T 3ui2_A 178 VLEGQ 182 (244)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99985
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=6.1e-22 Score=171.34 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=76.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457 88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167 (534)
Q Consensus 88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 167 (534)
+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHH
Confidence 4556666666666666666666666666555 45566666666666666666666666666555 445566666666666
Q ss_pred HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS 215 (534)
Q Consensus 168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~ 215 (534)
+..|+.+++++|++.+++ ++.+|..|.||||+|+..+..+++++|.+
T Consensus 84 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 666666666666666665 35566666666666666655555555544
No 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=4.9e-22 Score=171.93 Aligned_cols=129 Identities=21% Similarity=0.260 Sum_probs=115.7
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHH
Q 009457 52 MQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLY 131 (534)
Q Consensus 52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh 131 (534)
.+|..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence 36789999999999999999999999987 567788999999999999999999999999999987 678999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457 132 SAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184 (534)
Q Consensus 132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 184 (534)
+|+..|+.+++++|++.+++ .+.+|.+|.||||+|+..+..+++++|.+..+
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 99999999999999999988 67899999999999999999888887776544
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=2.6e-21 Score=190.61 Aligned_cols=138 Identities=19% Similarity=0.244 Sum_probs=121.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-----cccCCCcHHHHHHHc---CCHHHHHHHHhcCCccceecCCCCch
Q 009457 125 SNTSPLYSAAVQDHLDVVNTILDADVSCTRI-----VRKNGKTALHTAARY---GLINIVTALIDRDPEIVTIKDKKGQT 196 (534)
Q Consensus 125 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t 196 (534)
.+.++|+.|+..|+.+.++.|++.+.++... .+..|.||||+|+.. |+.+++++|++.+++ ++.+|..|+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCC
Confidence 3557899999999999999999999884332 688999999999997 899999999999998 5889999999
Q ss_pred HHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457 197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 197 ~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~ 271 (534)
|||+|+..|+.+++++|++. +.+++.+|.+|.||||+|+..++.+++++|++. |++ .|.||||+|+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g~tpLh~A~~ 295 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TFAFPLHVDYS 295 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TTSSCCC----
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CCCChhHHHHh
Confidence 99999999999999999996 667799999999999999999999999999995 655 58999999998
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=4.2e-21 Score=162.77 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhcc
Q 009457 9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIR 88 (534)
Q Consensus 9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~ 88 (534)
..|+||||.|++.|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .+++..
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~ 69 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGED-------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKG--ADINAP 69 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCC-------------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT--CCTTCC
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCC-------------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCcC
Confidence 3445555555555555555555554433 2334444555555555555555555555443 334444
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457 89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA 133 (534)
Q Consensus 89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A 133 (534)
|..|+||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 70 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEAT 113 (123)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence 445555555555555555555555554444 34445555555554
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=2e-21 Score=182.70 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=61.8
Q ss_pred HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhh-CccccccCCCCCCc
Q 009457 50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSI-WPELCKSCDSSNTS 128 (534)
Q Consensus 50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~l~~~~d~~g~t 128 (534)
++..+..|.||||+|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++. +.++ +..|..|.|
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t 142 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT 142 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred ccccccccccccccccccCcHHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence 3444445555555555555555555555543 23444445555555555555555555555554 3333 344455555
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457 129 PLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184 (534)
Q Consensus 129 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 184 (534)
|||+|+..|+.+++++|++.+++ .+.+|.+|.||||+|+..|+.++++.|++.++
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 55555555555555555555444 33444555555555555555555555544443
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=4e-21 Score=162.91 Aligned_cols=107 Identities=23% Similarity=0.259 Sum_probs=47.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457 92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171 (534)
Q Consensus 92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 171 (534)
|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|+||||+|+..|
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence 344444444444444444444444433 33344444444444444444444444444433 3334444444444444444
Q ss_pred CHHHHHHHHhcCCccceecCCCCchHHHHH
Q 009457 172 LINIVTALIDRDPEIVTIKDKKGQTALHMA 201 (534)
Q Consensus 172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A 201 (534)
+.+++++|++.+++ ++.+|..|+||||+|
T Consensus 85 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 85 HVSCVKLLLSKGAD-KTVKGPDGLTAFEAT 113 (123)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHC
T ss_pred CHHHHHHHHHcCCC-CCCcCCCCCCHHHHh
Confidence 44444444444444 234444444444444
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=4.9e-21 Score=180.01 Aligned_cols=133 Identities=26% Similarity=0.255 Sum_probs=60.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc-CCccceecCCCCchHHHHHH
Q 009457 124 SSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR-DPEIVTIKDKKGQTALHMAV 202 (534)
Q Consensus 124 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~ 202 (534)
..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|+..|+.+++++|++. +.+ ++.+|..|+||||+|+
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAAA 148 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHHH
Confidence 3444555555555555555555554444 334444555555555555555555555554 333 3445555555555555
Q ss_pred hCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcccccccc
Q 009457 203 KGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260 (534)
Q Consensus 203 ~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~ 260 (534)
..|+.+++++|++. +.+++.+|.+|.||||+|+..++.++++.|+.. +++.+..|.
T Consensus 149 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~ 204 (222)
T 3ehr_A 149 WKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNA 204 (222)
T ss_dssp HHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred HcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccch
Confidence 55555555555554 333455555555555555555555555555552 444444443
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=1.6e-19 Score=175.73 Aligned_cols=127 Identities=21% Similarity=0.281 Sum_probs=96.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCccc-----eecCCCCchHHHHHHhC---CCHHHHHHhHhcCccccccccCCCChH
Q 009457 160 GKTALHTAARYGLINIVTALIDRDPEIV-----TIKDKKGQTALHMAVKG---QCPSVVEYILSADHLILNERDKKGNTA 231 (534)
Q Consensus 160 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~in~~d~~g~T~ 231 (534)
..++|+.|+..|+.+.++.+++.+++.. +..|..|+||||+|+.. |+.+++++|+++ +.++|.+|..|+||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~Tp 208 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCH
Confidence 4467788888888888888877777642 33367788888888887 778888888876 45567788888888
Q ss_pred HHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457 232 VHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH 292 (534)
Q Consensus 232 Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~ 292 (534)
||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+. .++. +++++|+++|+..
T Consensus 209 Lh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~--~~~~--~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKR--LKHE--HCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHH--cCCH--HHHHHHHHcCCCC
Confidence 888888888888888888 478888888888888888887 6665 7888888887754
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=1.8e-19 Score=175.45 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=142.4
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457 53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS 132 (534)
Q Consensus 53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~ 132 (534)
.|..+.++|+.+...|+..+.+++...-+..... +...+.... .....-..+++...........+....++|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~-kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPV-KPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCC-SCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcC-CCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 4677889999999999988777665432111000 111111111 11122222333333222211122234578999
Q ss_pred HHHcCCHHHHHHHHhcCCCcc-----cccccCCCcHHHHHHHc---CCHHHHHHHHhcCCccceecCCCCchHHHHHHhC
Q 009457 133 AAVQDHLDVVNTILDADVSCT-----RIVRKNGKTALHTAARY---GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG 204 (534)
Q Consensus 133 Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 204 (534)
|+..|+.+.+..+++.+.+.. +..|..|.||||+|+.. |+.+++++|++.+++ ++.+|..|+||||+|+..
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLT 215 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHT
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHc
Confidence 999999999999999988753 33478899999999999 899999999999999 588999999999999999
Q ss_pred CCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457 205 QCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250 (534)
Q Consensus 205 g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 250 (534)
|+.+++++|+++ +.+++.+|.+|.||||+|+..|+.+++++|+++
T Consensus 216 g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 216 DNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 999999999996 667899999999999999999999999999996
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.79 E-value=2.4e-19 Score=180.83 Aligned_cols=145 Identities=20% Similarity=0.209 Sum_probs=104.1
Q ss_pred CCCCcHHHHHHHc-CCHHHHHHHHhcCCCcccccc--cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHH
Q 009457 124 SSNTSPLYSAAVQ-DHLDVVNTILDADVSCTRIVR--KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHM 200 (534)
Q Consensus 124 ~~g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~ 200 (534)
..+.||||.|+.. |+.++++.|++.+++ .+..+ ..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence 3456788888888 888888888888887 45566 7888899999888888899888888888 47888888899999
Q ss_pred HHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccC--CccccccccCCCCHHHHHHH
Q 009457 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT--SIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 201 A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~--g~~~~~~n~~g~t~L~lA~~ 271 (534)
|+..|+.+++++|+++ +.+++.+|.+|.||||+|+..++.+++++|+... +.+....+..+.|+++++..
T Consensus 275 A~~~g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 275 ATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHcCcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 9988888888888886 5666888888899999999888888888888642 23344556778888887766
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=6.1e-19 Score=177.84 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=116.6
Q ss_pred cCCCCCcHHHHHHHc-CCHHHHHHHHhhCccccccCC--CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457 88 RSRSDMNTFHVAAKK-GHLGIAKELVSIWPELCKSCD--SSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL 164 (534)
Q Consensus 88 ~~~~g~t~Lh~Aa~~-g~~~iv~~Ll~~~~~l~~~~d--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 164 (534)
.+..+.|+||.|+.. |+.++++.|+++++++ +..| ..|.||||+|+..|+.+++++|++.+++ .+..|..|+|||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL 272 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL 272 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 344567899999999 9999999999999998 5556 8899999999999999999999999988 678999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCc--cccccccCCCChHHHHHHHc
Q 009457 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH--LILNERDKKGNTAVHIATRK 238 (534)
Q Consensus 165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~--~~in~~d~~g~T~Lh~A~~~ 238 (534)
|+|+..|+.+++++|++.+++ ++..|..|.||||+|+..++.+++++|+..+. ......+..+.|+++++...
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 999999999999999999999 58999999999999999999999999997532 22234556778888877644
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=1.4e-18 Score=139.26 Aligned_cols=90 Identities=34% Similarity=0.548 Sum_probs=41.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457 92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171 (534)
Q Consensus 92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 171 (534)
|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|.+|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence 444444444444444444444444443 33444444444444444444444444444444 3334444444444444444
Q ss_pred CHHHHHHHHhcC
Q 009457 172 LINIVTALIDRD 183 (534)
Q Consensus 172 ~~~iv~~Ll~~~ 183 (534)
+.+++++|++.+
T Consensus 80 ~~~~~~~Ll~~g 91 (93)
T 1n0q_A 80 HLEVVKLLLEAG 91 (93)
T ss_dssp CHHHHHHHHHTT
T ss_pred CHHHHHHHHHcC
Confidence 444444444443
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1.3e-18 Score=183.72 Aligned_cols=122 Identities=22% Similarity=0.181 Sum_probs=82.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHhhCccccccC------CCCCCcHHHHHHH---cCCHHHHHHHHhcCCCcccccccCCCcH
Q 009457 93 MNTFHVAAKKGHLGIAKELVSIWPELCKSC------DSSNTSPLYSAAV---QDHLDVVNTILDADVSCTRIVRKNGKTA 163 (534)
Q Consensus 93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~------d~~g~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 163 (534)
.+.||.|+..|+.++++.|++.++++ +.. |..|.||||+|+. .|+.+++++|++.|++ .+.+|.+|+||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcH
Confidence 35677777777777777777766665 222 5667777777744 6667777777776666 55666677777
Q ss_pred HHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC
Q 009457 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217 (534)
Q Consensus 164 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 217 (534)
||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g 263 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQ 263 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 7777777777777777777766 4666777777777777777777777777653
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.77 E-value=1.6e-18 Score=139.07 Aligned_cols=93 Identities=29% Similarity=0.450 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHH
Q 009457 56 TGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAV 135 (534)
Q Consensus 56 ~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~ 135 (534)
+|.||||+|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 4899999999999999999999987 567889999999999999999999999999999998 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCC
Q 009457 136 QDHLDVVNTILDADVS 151 (534)
Q Consensus 136 ~g~~~~v~~Ll~~~~~ 151 (534)
.|+.+++++|++.|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999998863
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1.4e-18 Score=183.30 Aligned_cols=136 Identities=20% Similarity=0.245 Sum_probs=113.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCccccc------ccCCCcHHHHHHH---cCCHHHHHHHHhcCCccceecCCCCch
Q 009457 126 NTSPLYSAAVQDHLDVVNTILDADVSCTRIV------RKNGKTALHTAAR---YGLINIVTALIDRDPEIVTIKDKKGQT 196 (534)
Q Consensus 126 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~d~~g~t 196 (534)
..+.||.|+..|+.+.++.|++.+++. +.. |..|.||||+|++ .|+.+++++|++.+++ ++.+|..|+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCc
Confidence 347799999999999999999999883 444 7889999999976 8999999999999998 5899999999
Q ss_pred HHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457 197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271 (534)
Q Consensus 197 ~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~ 271 (534)
|||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+..|+.+++++|+++ |++++. +|+|.+..
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQA-QAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHT-CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT-CC------------------
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCC------Ccceeecc
Confidence 99999999999999999996 567899999999999999999999999999995 888876 46665543
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=9.8e-19 Score=146.12 Aligned_cols=109 Identities=33% Similarity=0.450 Sum_probs=87.1
Q ss_pred ccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHH
Q 009457 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHI 234 (534)
Q Consensus 155 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~ 234 (534)
.+|.+|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..++.+++++|++. +.+++.+|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHH
Confidence 4677888888888888888888888888877 477788888888888888888888888876 55568888888888888
Q ss_pred HHHcCCHHHHHHHhccCCccccccccCCCCHH
Q 009457 235 ATRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266 (534)
Q Consensus 235 A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L 266 (534)
|+..++.+++++|+++ |+++|.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAK-GADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTT-SSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHc-CCCCCcCCccccccc
Confidence 8888888888888884 888888888888763
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=2.9e-18 Score=143.23 Aligned_cols=95 Identities=27% Similarity=0.373 Sum_probs=40.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHH
Q 009457 89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA 168 (534)
Q Consensus 89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 168 (534)
|.+|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAK 83 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence 334444444444444444444444444433 33344444444444444444444444444433 2333444444444444
Q ss_pred HcCCHHHHHHHHhcCCc
Q 009457 169 RYGLINIVTALIDRDPE 185 (534)
Q Consensus 169 ~~g~~~iv~~Ll~~~~~ 185 (534)
..|+.+++++|++++++
T Consensus 84 ~~~~~~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGAD 100 (115)
T ss_dssp TTTCHHHHHHHHTTSSS
T ss_pred HCCCHHHHHHHHHcCCC
Confidence 44444444444444444
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.63 E-value=6.6e-16 Score=127.86 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=64.1
Q ss_pred HHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCC
Q 009457 48 ELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNT 127 (534)
Q Consensus 48 ~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~ 127 (534)
......+.+|.||||+|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~ 91 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGK 91 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCC
Confidence 345566677777777777777777777777765 445666777777777777777777777777777665 55677777
Q ss_pred cHHHHHHHcCCHHHHHHH
Q 009457 128 SPLYSAAVQDHLDVVNTI 145 (534)
Q Consensus 128 tpLh~Aa~~g~~~~v~~L 145 (534)
||||+|+..|+.+++++|
T Consensus 92 tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHh
Confidence 777777777777777665
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.62 E-value=1.2e-15 Score=126.37 Aligned_cols=90 Identities=24% Similarity=0.278 Sum_probs=57.0
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457 88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167 (534)
Q Consensus 88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 167 (534)
.+.+|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDIS 97 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHH
Confidence 4556666666666666666666666666655 45566666666666666666666666666655 445666666666666
Q ss_pred HHcCCHHHHHHH
Q 009457 168 ARYGLINIVTAL 179 (534)
Q Consensus 168 ~~~g~~~iv~~L 179 (534)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 666666666654
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=68.51 E-value=13 Score=36.10 Aligned_cols=26 Identities=0% Similarity=-0.070 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHh
Q 009457 8 RFITHQSFFSAVRSGDLETLKNIIDN 33 (534)
Q Consensus 8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~ 33 (534)
|.+|...|......++.+..+.+.+.
T Consensus 34 dq~gsR~lQ~~l~~~~~~~~~~i~~e 59 (351)
T 3gvo_A 34 DQHGSRFIQQKLERATPAERQIVFNE 59 (351)
T ss_dssp SHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCcchHHHHHHHhhCCHHHHHHHHHH
Confidence 33444445555555555555555544
No 116
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=66.77 E-value=6.4 Score=27.51 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHHHHhhHHHH-Hhhhhhccccchhhhhhhh
Q 009457 460 WMAITITLMGAPILVGTLASMCYF-VFRQRFGLFRNDSQRRIRR 502 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 502 (534)
|..+. +++|+.+.+.+|..++.| -++.|.+..+..+...+|+
T Consensus 7 ~p~~L-ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMSQikr 49 (70)
T 2klu_A 7 GSMAL-IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMSQIKR 49 (70)
T ss_dssp CSSHH-HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSSHHHH
T ss_pred hHHHH-HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44344 678776666666666555 5666666555555555554
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=52.86 E-value=55 Score=31.79 Aligned_cols=60 Identities=5% Similarity=-0.057 Sum_probs=29.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009457 8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77 (534)
Q Consensus 8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll 77 (534)
|.+|...+..+...++.+..+.+++.-.. ...--..|..|+..+....+.+..+....++
T Consensus 39 d~~gsR~lQ~~l~~~~~~~~~~I~~el~~----------~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~ 98 (369)
T 3k49_A 39 DQHGSRFIQRELATSPASEKEVIFNEIRD----------DAIELSNDVFGNYVIQKFFEFGSKIQKNTLV 98 (369)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHHHHGG----------GHHHHHHSTTTHHHHHHHHHHCCHHHHHHHH
T ss_pred CCcchHHHHHHhccCCHHHHHHHHHHHHH----------HHHHHhhCcccccHHHHHHHhCCHHHHHHHH
Confidence 44455555666666666555555554321 1111234455555555555555544433333
No 118
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=48.45 E-value=38 Score=32.74 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=14.1
Q ss_pred cCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457 190 KDKKGQTALHMAVKGQCPSVVEYILS 215 (534)
Q Consensus 190 ~d~~g~t~Lh~A~~~g~~~iv~~Ll~ 215 (534)
.|..|.-.+..+.+.+..+..+.+++
T Consensus 213 ~d~~Gn~ViQ~~l~~~~~~~~~~i~~ 238 (351)
T 3gvo_A 213 QDQYGNYVIQHVLEHGRPEDKSKIVS 238 (351)
T ss_dssp TSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhCchhhHHHHHH
Confidence 45556555655555555554444443
No 119
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.33 E-value=27 Score=22.46 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=15.8
Q ss_pred chhhhhhHHHHHHHHHHHHhhHHHHHhhh
Q 009457 459 SWMAITITLMGAPILVGTLASMCYFVFRQ 487 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (534)
.-.+|...++++++.+.++....++.++.
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhh
Confidence 34456666666655555555444554444
No 120
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=43.86 E-value=22 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHHHhhHHHHHhhh
Q 009457 460 WMAITITLMGAPILVGTLASMCYFVFRQ 487 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (534)
-.+|...++++++.+.++....+++++.
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhh
Confidence 3456666776665555555554555444
No 121
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=33.55 E-value=82 Score=30.52 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=10.2
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHh
Q 009457 225 DKKGNTAVHIATRKCRPQIVSLLL 248 (534)
Q Consensus 225 d~~g~T~Lh~A~~~~~~~iv~~Ll 248 (534)
++.|...+..+...+..+.-+.++
T Consensus 261 ~k~gS~Vvek~l~~~~~~~r~~ii 284 (369)
T 3k49_A 261 HKFASNVVEKSILYGSKNQKDLII 284 (369)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHH
T ss_pred hhHhhHHHHHHHHhCCHHHHHHHH
Confidence 344444444444444444333333
No 122
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=30.18 E-value=61 Score=31.06 Aligned_cols=39 Identities=5% Similarity=-0.034 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhe-ec--CCCchhhhhhHHH
Q 009457 430 VVNKLMWTACACTCAAFLSIAFMV-VG--NGHSWMAITITLM 468 (534)
Q Consensus 430 ~~~~l~~~~~~~~~~af~~~~~~~-~~--~~~~~~~~~~~~~ 468 (534)
..+.|..++.+++...|+||.|-+ +. |...|..-+.+++
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l 319 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVM 319 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHH
Confidence 344467788888899999999954 22 3344543333333
No 123
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=28.37 E-value=63 Score=18.09 Aligned_cols=20 Identities=10% Similarity=0.384 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhHHHHHhhh
Q 009457 468 MGAPILVGTLASMCYFVFRQ 487 (534)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~ 487 (534)
|++.+.+.+|..+.||+++.
T Consensus 9 iaglvalltflafgfwlfky 28 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666766543
No 124
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.40 E-value=60 Score=20.02 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHhh
Q 009457 463 ITITLMGAPILVGTLASMCYFVFR 486 (534)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~ 486 (534)
|.-++++.++-+.++..+.||+++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 444555554444444445555443
No 125
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=26.01 E-value=44 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.5
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 009457 14 SFFSAVRSGDLETLKNIIDN 33 (534)
Q Consensus 14 ~Lh~Aa~~G~~~~v~~ll~~ 33 (534)
-++.|+..||.+.++.|=.+
T Consensus 16 qiyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 46789999999999988543
No 126
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.77 E-value=84 Score=30.06 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=15.6
Q ss_pred HhhcccceehhhHHHHHHHHHhh
Q 009457 345 VQNTTNSITVVAVLFASIAFLAL 367 (534)
Q Consensus 345 lk~t~~s~~v~a~Liatv~f~a~ 367 (534)
+.+....+++++++++..||-||
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaG 297 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITG 297 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444567788888877787765
No 127
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.80 E-value=83 Score=30.48 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=18.6
Q ss_pred HHhhcccceehhhHHHHHHHHHhhc
Q 009457 344 AVQNTTNSITVVAVLFASIAFLALF 368 (534)
Q Consensus 344 ~lk~t~~s~~v~a~Liatv~f~a~~ 368 (534)
.+.+....++++|++++..||-||+
T Consensus 298 ~~N~imk~LTiit~IflP~T~IaGi 322 (363)
T 2iub_A 298 KTNEVMKVLTIIATIFMPLTFIAGI 322 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556788899999988988774
No 128
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.53 E-value=82 Score=30.50 Aligned_cols=24 Identities=17% Similarity=0.139 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhe
Q 009457 430 VVNKLMWTACACTCAAFLSIAFMV 453 (534)
Q Consensus 430 ~~~~l~~~~~~~~~~af~~~~~~~ 453 (534)
+.+.|..++.+++...|+||+|-+
T Consensus 302 imk~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 302 VMKVLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344577788999999999999853
No 129
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=21.46 E-value=3.3e+02 Score=23.25 Aligned_cols=133 Identities=8% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHH-HHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457 55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTF-HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA 133 (534)
Q Consensus 55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L-h~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A 133 (534)
.+-++-+-+|.+.|+.++...+.+.. .+..-..-| ..|...|++++++.-..+-.++ ...+.+.
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly 70 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLY 70 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHH
Q ss_pred HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457 134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213 (534)
Q Consensus 134 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L 213 (534)
...|+.+-++.+.+ ......+-....+.+...|+++-...++......+. +..+|-.+|..++.+.+
T Consensus 71 ~~tg~~e~L~kla~-----iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~e--------A~~~A~t~g~~~~a~~~ 137 (177)
T 3mkq_B 71 LVTGDVNKLSKMQN-----IAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL--------AYAVAKANGDEAAASAF 137 (177)
T ss_dssp HHHTCHHHHHHHHH-----HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH--------HHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHH-----HHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHH--------HHHHHHHcCcHHHHHHH
Q ss_pred Hh
Q 009457 214 LS 215 (534)
Q Consensus 214 l~ 215 (534)
++
T Consensus 138 ~~ 139 (177)
T 3mkq_B 138 LE 139 (177)
T ss_dssp HH
T ss_pred HH
No 130
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=20.65 E-value=5e+02 Score=25.88 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=6.6
Q ss_pred HHHHHHHHcCCc
Q 009457 280 EIKEALAEAGAK 291 (534)
Q Consensus 280 ~i~~~L~~~ga~ 291 (534)
++.+.+.+++..
T Consensus 240 ea~~~m~~~~~~ 251 (473)
T 2zy9_A 240 EVARLMADYDFT 251 (473)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHhcCCc
Confidence 555566655543
No 131
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.56 E-value=2.1e+02 Score=24.69 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=7.5
Q ss_pred ehhhHHHHHHHHHHH
Q 009457 394 VFCLLNATSLFISLA 408 (534)
Q Consensus 394 ~F~~~~~~a~~~s~~ 408 (534)
+|.+.-.++..+++.
T Consensus 4 ~F~~~a~~~i~~al~ 18 (184)
T 3rko_J 4 AFYICGLIAILATLR 18 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355545555555543
Done!