BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009460
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/534 (85%), Positives = 491/534 (91%)
Query: 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
M+GVD LA ERKKA FDVDEMKIVWAGSRH F+++DRI++LVASDP F K+ R ML RKE
Sbjct: 20 MEGVDYLADERKKAGFDVDEMKIVWAGSRHDFELTDRISKLVASDPGFSKEGRTMLPRKE 79
Query: 61 LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
LFKNTLRKAAYAWKRIIELRLS+EEA+MLR VDEPAFTDLHWGMF+PAIKGQGTD+Q +
Sbjct: 80 LFKNTLRKAAYAWKRIIELRLSQEEATMLRRYVDEPAFTDLHWGMFIPAIKGQGTDKQQE 139
Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG
Sbjct: 140 KWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 199
Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
KVSTHAVVYARLITDG+D+GVNGFIVQLRSLEDH PLPG+T+GDIGMKFGNGAYN+MDNG
Sbjct: 200 KVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAYNSMDNG 259
Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
VL F+HVRIPR+QMLMRVSQVT+EGKYVQS++PRQLLYGTMVYVRQ+IVADAS A+SRAV
Sbjct: 260 VLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSIVADASLAMSRAV 319
Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
CIATRYSAVRRQFGS+NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ
Sbjct: 320 CIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 379
Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420
RL ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA
Sbjct: 380 RLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 439
Query: 421 CTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480
CTYEGDN+VL LQVARFLMKT+SQLG G PVGT +YMGR E LMQC V++AEDWL P
Sbjct: 440 CTYEGDNVVLQLQVARFLMKTISQLGTGKKPVGTVSYMGRIEHLMQCRSDVKQAEDWLKP 499
Query: 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHCQLIVVSK 534
SA+LEAFEAR+ RMSVACA+NLSKF NQEEGF HCQLIVVSK
Sbjct: 500 SAVLEAFEARSARMSVACAKNLSKFENQEEGFAELAADLVEAAVAHCQLIVVSK 553
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/534 (80%), Positives = 479/534 (89%)
Query: 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
M+G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKE
Sbjct: 1 MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKE 60
Query: 61 LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
LFK+TLRK A+A+KRIIELRL+EEEA LR +D+PA+ DLHWGMFVPAIKGQGT+EQ +
Sbjct: 61 LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQK 120
Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
KWL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWWPGGLG
Sbjct: 121 KWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLG 180
Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
KVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG
Sbjct: 181 KVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240
Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS ALSRAV
Sbjct: 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAV 300
Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
CIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT+
Sbjct: 301 CIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTE 360
Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420
RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL SGLPELFAVYVPA
Sbjct: 361 RLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPA 420
Query: 421 CTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480
CTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA L+QC GVQKAEDWLNP
Sbjct: 421 CTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAEDWLNP 480
Query: 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHCQLIVVSK 534
+LEAFEARA+RM+V CA+NLSKF NQE+GF HCQLIVVSK
Sbjct: 481 DVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSK 534
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/536 (42%), Positives = 334/536 (62%), Gaps = 14/536 (2%)
Query: 7 LAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTL 66
L ER A F+ + + + GS + I L+ +DP F+ ++ L+R + ++ +
Sbjct: 5 LRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAV 64
Query: 67 RKAAYAWKRIIELRLSEEEASM-LRSSVD--EPAFTDLHWGMFVPAIKGQGTDEQHQKWL 123
+K+A K++ E +S+ E M ++SV P DLH GMF+P + Q T EQ +++
Sbjct: 65 KKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFF 124
Query: 124 PLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 183
A+ +EI G YAQTE+GHG++++GLETTAT+DP+T EF+++SPT+TS KWWPGGLGK S
Sbjct: 125 MPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTS 184
Query: 184 THAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 243
HA+V A+LIT G+ +G++ F+V +R + H PLPGIT+GDIG KFG Y MDNG L+
Sbjct: 185 NHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFG---YEEMDNGYLK 241
Query: 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIA 303
++ RIPR MLM+ +QV +G YV+ + +L YGTMV+VR +V +A+ +LS+A IA
Sbjct: 242 MDNYRIPRENMLMKYAQVKPDGTYVKP-LSNKLTYGTMVFVRSFLVGNAAQSLSKACTIA 300
Query: 304 TRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 363
RYSAVRRQ K PE Q++D++TQQ +LFPLLA+AYAF FVG ++K Y + + +
Sbjct: 301 IRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIG 360
Query: 364 ANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTY 423
D S LPE HA TAGLK+ TT GIEECR CGGHGY SSG+P ++ + PACT+
Sbjct: 361 QGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTF 420
Query: 424 EGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR--AEQLMQCHCGVQKAEDWLNP- 480
EG+N V++LQ ARFLMK Q+ G + G +Y+ ++++ V +N
Sbjct: 421 EGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSQRIQPQQVAVWPTMVDINSL 480
Query: 481 SAILEAFEARAIRMSVACAQNL----SKFTNQEEGFXXXXXXXXXXXXXHCQLIVV 532
+ EA++ RA R+ A+NL S ++E + HC +VV
Sbjct: 481 EGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVV 536
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 135/348 (38%), Gaps = 69/348 (19%)
Query: 86 ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145
A + R F +H + + I G++ Q +K+LP ++ + C+A TE +GS+
Sbjct: 123 AEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182
Query: 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGQDHGVN 202
GL TTAT V + K W G ST A +++AR T Q +N
Sbjct: 183 ASGLGTTAT-------KVEGGWKINGQKRWIGN----STFADLLIIFARNTTTNQ---IN 228
Query: 203 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT 262
GFIV+ + PG+ I K G + NG + ++V +P L V+
Sbjct: 229 GFIVKKDA-------PGLKATKIPNKIG---LRMVQNGDILLQNVFVPDEDRLPGVNSFQ 278
Query: 263 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVC-IATRYSAVRRQFGSKNGGPE 321
K ++ V + +VA +S + + RY R+QFG+
Sbjct: 279 DTSK--------------VLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAP----- 319
Query: 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 381
+ ++ Q +L +L + A +G L LY E T G
Sbjct: 320 --LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLY----------------ETGQMTPGQA 361
Query: 382 SLTTTATADGIEEC----RKLCGGHGYLCSSGLPELFAVYVPACTYEG 425
SL + E R+L GG+G L + + F P TYEG
Sbjct: 362 SLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEG 409
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 135/348 (38%), Gaps = 69/348 (19%)
Query: 86 ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145
A + R F +H + + I G++ Q +K+LP ++ + C+A TE +GS+
Sbjct: 123 AEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182
Query: 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGQDHGVN 202
GL TTAT V + K W G ST A +++AR T Q +N
Sbjct: 183 ASGLGTTAT-------KVEGGWKINGQKRWIGN----STFADLLIIFARNTTTNQ---IN 228
Query: 203 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT 262
GFIV+ + PG+ I K G + NG + ++V +P L V+
Sbjct: 229 GFIVKKDA-------PGLKATKIPNKIG---LRMVQNGDILLQNVFVPDEDRLPGVNSFQ 278
Query: 263 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVC-IATRYSAVRRQFGSKNGGPE 321
K ++ V + +VA +S + + RY R+QFG+
Sbjct: 279 DTSK--------------VLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAP----- 319
Query: 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 381
+ ++ Q +L +L + A +G L LY E T G
Sbjct: 320 --LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLY----------------ETGQMTPGQA 361
Query: 382 SLTTTATADGIEEC----RKLCGGHGYLCSSGLPELFAVYVPACTYEG 425
SL + E R+L GG+G L + + F P TYEG
Sbjct: 362 SLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEG 409
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168
AI G+DEQ +WLP IGC+ TE HGS+ G+ T AT D+++
Sbjct: 122 AIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATR--SGDDWI----- 174
Query: 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 228
LT +K W G V+ AVV+AR D G+ GF+V + PG T I K
Sbjct: 175 LTGTKMWITN-GSVADVAVVWAR-----TDEGIRGFVVP-------TDTPGFTANTIKSK 221
Query: 229 FGNGAYNTMDNGVLRFEHVRIPRNQML 255
A T + L + VR+P + L
Sbjct: 222 MSLRASVTSE---LVLDGVRLPDSARL 245
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 105 MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 164
+++ I G+ +Q Q+W+ + IGC+A +E G+GS+ TTA + D +V+
Sbjct: 98 LYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAR--EEGDSWVL 155
Query: 165 HSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGD 224
+ + W ++ VV+A Q+ G++ F+V + P PG+T+G
Sbjct: 156 NGTKAWITNSWE------ASATVVFASTDRSRQNKGISAFLVPM-------PTPGLTLGK 202
Query: 225 IGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 255
K G A +T + L FE RIP+ +L
Sbjct: 203 KEDKLGIRASSTAN---LIFEDCRIPKENLL 230
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 136/327 (41%), Gaps = 51/327 (15%)
Query: 114 GTDEQHQKWL-PLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172
GT+EQ +++L PL K + +A +E G+GS+ L+T A Q D +V L +
Sbjct: 101 GTEEQKERFLRPLTEK-PALAAFALSEPGNGSDAAALKTRAI--RQGDHYV-----LNGT 152
Query: 173 KWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 232
K W G+ + VV+A + + + GV +V+ + PG I K G
Sbjct: 153 KMWISNGGE-AEWVVVFATVNPELRHKGVVALVVERGT-------PGFKAIKIHGKMGQR 204
Query: 233 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 292
A T + L FE V++P +++ EG+ ++ T+ R + A +
Sbjct: 205 ASGTYE---LVFEDVKVPVE------NRLGEEGEGF------KIAMQTLNKTRIPVAAGS 249
Query: 293 SCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLK 352
RA+ A +Y+ R FG + +++ Q +L +L R +
Sbjct: 250 VGVARRALDEARKYAKEREAFGEP-------IANFQAIQFKLVDMLIGIETARMYTYYAA 302
Query: 353 WLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPE 412
WL LP AHA +A K+ + + + ++ GG+GY+ + +
Sbjct: 303 WLAD-----------QGLPHAHA-SAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEK 350
Query: 413 LFAVYVPACTYEGDNIVLLLQVARFLM 439
L YEG N + L +AR ++
Sbjct: 351 LLRDVKLNQIYEGTNEIQRLIIARHIL 377
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 137 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 189
Query: 174 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 230
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 190 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 241
Query: 231 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 242 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKTRPVVAA 286
Query: 291 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 339
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 287 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 344
Query: 340 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 369
++ A F G+ L TD Q L N F+T
Sbjct: 345 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 383
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 164
Query: 174 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 230
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 165 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 216
Query: 231 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 217 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKTRPVVAA 261
Query: 291 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 339
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 262 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 319
Query: 340 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 369
++ A F G+ L TD Q L N F+T
Sbjct: 320 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 358
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 164
Query: 174 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 230
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 165 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 216
Query: 231 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 217 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKERPVVAA 261
Query: 291 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 339
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 262 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 319
Query: 340 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 369
++ A F G+ L TD Q L N F+T
Sbjct: 320 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 358
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 130/333 (39%), Gaps = 58/333 (17%)
Query: 113 QGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172
+G++E ++ LP E + YA +E GS+ + T A D D+++ L S
Sbjct: 114 RGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVAD--GDDWI-----LNGS 166
Query: 173 KWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 232
K W GK ST V A D +G++ F+V H G T+G K G
Sbjct: 167 KCWITNGGK-STWYTVMAVTDPDKGANGISAFMV-------HKDDEGFTVGPKERKLGIK 218
Query: 233 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 292
T + L FE+ RIP ++++ + + T+ + R TI A A
Sbjct: 219 GSPTTE---LYFENCRIPGDRIIG------------EPGTGFKTALATLDHTRPTIGAQA 263
Query: 293 SCALSRAVCIATRYSAVRRQFG---SKNGGPETQVID--YKTQQNRLFPLLASAYAFRFV 347
A+ A Y+ R+QFG S N G + + D K + RL A+A A R
Sbjct: 264 VGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGE 323
Query: 348 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407
G D + A C A + T D ++ L GG+GY
Sbjct: 324 G-----------------DLGFISAASKCFA--SDVAMEVTTDAVQ----LFGGYGYTQD 360
Query: 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440
+ + YEG N + + ++R L++
Sbjct: 361 FPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 107 VPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166
VP I G G +Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+
Sbjct: 106 VPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN- 161
Query: 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIG 223
K W GK + + ++ AR D + GFIV+ + PG+ IG
Sbjct: 162 ----GQKMWITNGGKANWYFLL-ARSDPDPKAPASKAFTGFIVEADT-------PGVQIG 209
Query: 224 DIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283
+ G +T G++ FE VR+P+ +L T EG ++ GT
Sbjct: 210 RKEINMGQRCSDT--RGIV-FEDVRVPKENVL------TGEGAGF------KIAMGTFDK 254
Query: 284 VRQTIVADASCALSRAVCIATRYSAVRRQFG 314
R + A A RA+ AT+Y+ R+ FG
Sbjct: 255 TRPPVAAGAVGLAQRALDEATKYALERKTFG 285
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 107 VPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166
VP I G G +Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+
Sbjct: 96 VPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN- 151
Query: 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIG 223
K W GK + + ++ AR D + GFIV+ + PG+ IG
Sbjct: 152 ----GQKMWITNGGKANWYFLL-ARSDPDPKAPASKAFTGFIVE-------ADTPGVQIG 199
Query: 224 DIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283
+ G +T G++ FE VR+P+ +L T EG ++ GT
Sbjct: 200 RKEINMGQRCSDT--RGIV-FEDVRVPKENVL------TGEGAGF------KIAMGTFDK 244
Query: 284 VRQTIVADASCALSRAVCIATRYSAVRRQFG 314
R + A A RA+ AT+Y+ R+ FG
Sbjct: 245 TRPPVAAGAVGLAQRALDEATKYALERKTFG 275
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+ EQ Q W+ + IGC+A +E G+GS+ TTA + D +V++ +
Sbjct: 103 GSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTAR--AEGDSWVLNGTKAWITN 160
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
W ++ AVV+A Q+ ++ F+V + P PG+T+G K G
Sbjct: 161 AWE------ASAAVVFASTDRALQNKSISAFLVPM-------PTPGLTLGKKEDKLGIRG 207
Query: 234 YNTMDNGVLRFEHVRIPRNQML 255
+T + L FE RIP++ +L
Sbjct: 208 SSTAN---LIFEDCRIPKDSIL 226
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 126/324 (38%), Gaps = 45/324 (13%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
GT Q +K+LP E + + TE GS+ + T+A P + TL SK
Sbjct: 125 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYY-----TLNGSK 179
Query: 174 WW--PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 231
W GGL + T V+A+ T D ++ + GIT G K G
Sbjct: 180 LWISNGGLADIFT---VFAK--TPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGI 234
Query: 232 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 291
A NT + + F+ VR+P +L V + ++ +N R + A
Sbjct: 235 KASNTAE---VFFDGVRVPSENVLGEVGSGFKVAMHILNN------------GRFGMAAA 279
Query: 292 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWL 351
+ + + A ++ R QFG K + ++ Q + LA ++V E +
Sbjct: 280 LAGTMRGIIAKAVDHATNRTQFGEK-------IHNFGLIQEK----LARMVMLQYVTESM 328
Query: 352 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 411
++ + + A DF EA K + A +EC ++ GG G++ G+
Sbjct: 329 AYMVSANMDQ-GATDFQI--EAAIS----KIFGSEAAWKVTDECIQIMGGMGFMKEPGVE 381
Query: 412 ELFAVYVPACTYEGDNIVLLLQVA 435
+ +EG N +L L VA
Sbjct: 382 RVLRDLRIFRIFEGTNDILRLFVA 405
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 126/324 (38%), Gaps = 45/324 (13%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
GT Q +K+LP E + + TE GS+ + T+A P + TL SK
Sbjct: 145 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYY-----TLNGSK 199
Query: 174 WW--PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 231
W GGL + T V+A+ T D ++ + GIT G K G
Sbjct: 200 LWISNGGLADIFT---VFAK--TPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGI 254
Query: 232 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 291
A NT + + F+ VR+P +L V + ++ +N R + A
Sbjct: 255 KASNTAE---VFFDGVRVPSENVLGEVGSGFKVAMHILNN------------GRFGMAAA 299
Query: 292 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWL 351
+ + + A ++ R QFG K + ++ Q + LA ++V E +
Sbjct: 300 LAGTMRGIIAKAVDHATNRTQFGEK-------IHNFGLIQEK----LARMVMLQYVTESM 348
Query: 352 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 411
++ + + A DF EA K + A +EC ++ GG G++ G+
Sbjct: 349 AYMVSANMDQ-GATDFQI--EAAIS----KIFGSEAAWKVTDECIQIMGGMGFMKEPGVE 401
Query: 412 ELFAVYVPACTYEGDNIVLLLQVA 435
+ +EG N +L L VA
Sbjct: 402 RVLRDLRIFRIFEGTNDILRLFVA 425
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 134/367 (36%), Gaps = 105/367 (28%)
Query: 101 LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160
LH + P I GT+EQ QKWLP E+I A TE G GS++ + TTA D D
Sbjct: 93 LHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKD--GD 150
Query: 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLI-----TDGQ----DHGVNGFIVQLRSL 211
++++ K ++A LI TD Q G++ +V+ +
Sbjct: 151 YYIVNGQ-------------KTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDT- 196
Query: 212 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGK---YV 268
PG T G K G A +T + L F+ ++P +L EGK Y+
Sbjct: 197 ------PGFTRGRKLEKVGLHAQDTAE---LFFQDAKVPAYNLL------GEEGKGFYYL 241
Query: 269 QSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328
+ ++ R + A A + +Y R FG + V +++
Sbjct: 242 MEKLQQE---------RLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKR-------VSEFQ 285
Query: 329 TQQNRLFPL-----LASAYAFRFVGEWL------------KWLYTDVTQRLQANDFSTLP 371
T Q RL + L + R + E + KW T++ +R+ A
Sbjct: 286 TVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAA------- 338
Query: 372 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL 431
E +L GG+GY+ + + + Y G N ++
Sbjct: 339 ----------------------EAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMK 376
Query: 432 LQVARFL 438
+AR L
Sbjct: 377 TIIARQL 383
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 164/430 (38%), Gaps = 97/430 (22%)
Query: 42 VASDPAFRK--DNRAMLSRKELFK-NTLRKAA-------YAWKRIIELRLSEEEASMLRS 91
VA D A R+ N A +KELF + +RKAA Y + LS + S++
Sbjct: 29 VAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFE 88
Query: 92 SV-----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNV 146
++ A+ +H M I G +EQ K+ P ME Y TE G GS+
Sbjct: 89 ALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDA 147
Query: 147 QGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIV 206
L T+A Q D ++ L SK + G G+ + VV R G G++ +V
Sbjct: 148 ASLLTSA--KKQGDHYI-----LNGSKAFISGAGESDIY-VVMCRTGGPG-PKGISCIVV 198
Query: 207 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGK 266
+ PG++ G K G +N+ + FE +P +++ EG+
Sbjct: 199 E-------KGTPGLSFGKKEKKVG---WNSQPTRAVIFEDCAVP------VANRIGSEGQ 242
Query: 267 YVQSNVPRQLLYGTMVYVR-----QTIVADASCALSRAVCIATR-YSAVRRQFGSKNGGP 320
G ++ VR + +A S + A I TR + VR+QFG
Sbjct: 243 ------------GFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGE----- 285
Query: 321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGL 380
PL ++ Y L++ D+ RL A A A
Sbjct: 286 ---------------PLASNQY--------LQFTLADMATRLVAARLMVRNAAVALQEER 322
Query: 381 K---SLTTTATADGIEECRKLC-------GGHGYLCSSGLPELFAVYVPACTYEGDNIVL 430
K +L + A +EC +C GG+GYL + + EG N V+
Sbjct: 323 KDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVM 382
Query: 431 LLQVARFLMK 440
+ ++R L++
Sbjct: 383 RILISRSLLQ 392
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 97 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFD 156
+F + + + +I G++EQ +WLP + IGC+ TE GSN G+ T A D
Sbjct: 105 SFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRD 164
Query: 157 PQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSP 216
+++ L +K W G ++ A V+A+ D G+ GF+V +
Sbjct: 165 --GSDWI-----LNGTKMWITN-GNLADVATVWAQ-----TDDGIRGFLVP-------TD 204
Query: 217 LPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 255
PG T +I K A T + L ++VR+P + L
Sbjct: 205 TPGFTANEIHRKLSLRASVTSE---LVLDNVRLPASAQL 240
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 110 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 162
Query: 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 229
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 163 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 210
Query: 230 GNGAYNTMDNGVLRFEHVRIPRNQML 255
A T G++ + V +P +L
Sbjct: 211 SLRASAT---GMIIMDGVEVPEENVL 233
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 110 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 162
Query: 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 229
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 163 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 210
Query: 230 GNGAYNTMDNGVLRFEHVRIPRNQML 255
A T G++ + V +P +L
Sbjct: 211 SLRASAT---GMIIMDGVEVPEENVL 233
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 110 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 106 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 160
Query: 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 229
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 161 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 208
Query: 230 GNGAYNTMDNGVLRFEHVRIPRNQML 255
A T G++ + V +P +L
Sbjct: 209 SLRASAT---GMIIMDGVEVPEENVL 231
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 30/205 (14%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G++ +K++P E +G + TE GS+V + +TA + + D ++ L SK
Sbjct: 105 GSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTA--EDKGDHWL-----LNGSK 157
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
W + + YA G++ F+++ R+ PGI ++ K G+ A
Sbjct: 158 TWISNAAQADV-LIYYAYTDKAAGSRGLSAFVIEPRNF------PGIKTSNL-EKLGSHA 209
Query: 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 293
T G L ++V++P+ +L + R +++G++ + R + A
Sbjct: 210 SPT---GELFLDNVKVPKENILGKPGDGAR------------IVFGSLNHTRLSAAAGGV 254
Query: 294 CALSRAVCIATRYSAVRRQFGSKNG 318
+ A +Y RRQFG G
Sbjct: 255 GLAQACLDAAIKYCNERRQFGKPIG 279
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 115 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 167
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 207
W ++ VV+A+L DG+D + GFI++
Sbjct: 168 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 199
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 119 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 171
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 207
W ++ VV+A+L DG+D + GFI++
Sbjct: 172 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 203
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 116 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 168
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 207
W ++ VV+A+L DG+D + GFI++
Sbjct: 169 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 200
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 32/205 (15%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
GT+EQ +K+LP E I Y TE G GS+ +T AT ++ L K
Sbjct: 125 GTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYI-----LNGVK 179
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
W G V+A++ DG+ F+V+ + PG++ G K G A
Sbjct: 180 QWISNAGFAHLF-TVFAKV--DGEHF--TAFLVERDT-------PGLSFGPEEKKMGIKA 227
Query: 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 293
+T + E V++P +L + + G + NV + R + A A
Sbjct: 228 SSTRQ---VILEDVKVPVENVLGEIGK----GHKIAFNV--------LNVGRYKLGAGAV 272
Query: 294 CALSRAVCIATRYSAVRRQFGSKNG 318
RA+ ++ +Y+ R QFG G
Sbjct: 273 GGAKRALELSAQYATQRVQFGRPIG 297
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 42/205 (20%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G +EQ +K+LPL E + YA TE G GS+ G +TTA + + +V L K
Sbjct: 130 GNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYV-----LNGEK 184
Query: 174 WWPGGLGKVSTHA-----VVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 228
W ++ A +VYA++ DG+ + FIV+ +D++ G++ K
Sbjct: 185 QW------ITNSAFADVFIVYAKI--DGEH--FSAFIVE----KDYA---GVSTSPEEKK 227
Query: 229 FGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 288
G +T L E +P+ +L + + G + N+ + R +
Sbjct: 228 XGIKCSSTR---TLILEDALVPKENLLGEIGK----GHIIAFNI--------LNIGRYKL 272
Query: 289 VADASCALSRAVCIATRYSAVRRQF 313
+ RAV I+ +Y+ R+QF
Sbjct: 273 GVGTVGSAKRAVEISAQYANQRQQF 297
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 32/203 (15%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
GT+EQ ++WLP E IG Y+ +E GS+ L AT P +VI+ SK
Sbjct: 112 GTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAAT--PTDGGYVIN-----GSK 164
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
W GK + ++AR T GV+ F+V + PG++ G K G A
Sbjct: 165 SWITHGGKADFY-TLFAR--TGEGSRGVSCFLVP-------ADQPGLSFGKPEEKMGLHA 214
Query: 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 293
T +++ RI ++ ++ EG+ + Q+ + + R I A A+
Sbjct: 215 VPTTSA---FYDNARIDADR------RIGEEGQGL------QIAFSALDSGRLGIAAVAT 259
Query: 294 CALSRAVCIATRYSAVRRQFGSK 316
A+ A Y+ R FG K
Sbjct: 260 GLAQAALDEAVAYANERTAFGRK 282
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 34/220 (15%)
Query: 102 HWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161
H + + + G + Q +K+LP E IG A +E GS+V ++ A + + +
Sbjct: 100 HSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKA--EKKGNH 157
Query: 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYAR--LITDGQDHGVNGFIVQLRSLEDHSPLPG 219
++ L +K+W G + +VYA+ L G+ FIV+ +PG
Sbjct: 158 YI-----LNGNKFWITN-GPDADVLIVYAKTDLAAVPASRGITAFIVE-------KGMPG 204
Query: 220 ITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYG 279
+ K G NT + L FE +IP +L +G YV L+ G
Sbjct: 205 FSTSKKLDKLGMRGSNTCE---LIFEDCKIPAANILGH----ENKGVYV-------LMSG 250
Query: 280 TMVYVRQTIVADASCALSRAVCIAT-RYSAVRRQFGSKNG 318
+ + + ++A L +AV T Y VR FG K G
Sbjct: 251 --LDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIG 288
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 97 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG-LETTATF 155
+F + + + I G++EQ +++LP + E++GC+ TE GS+ G ++T A
Sbjct: 91 SFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRAR- 149
Query: 156 DPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHG--VNGFIVQLRSLED 213
+ D +V L +K W G ++ AV++A+ D G V GF+V +
Sbjct: 150 -REGDTWV-----LNGTKMWITN-GNLAHLAVIWAK------DEGGEVLGFLVPTDT--- 193
Query: 214 HSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 255
PG ++ K A T + L E VR+P + L
Sbjct: 194 ----PGFQAREVKRKMSLRASVTSE---LVLEEVRVPESLRL 228
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+ EQ + WL + +I + TE S+ AT + DE VI+ K
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASS-DATNMAATAVVEGDEVVING-----RK 178
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
WW G+G +++ L TD H + L ++ PGIT+ M G
Sbjct: 179 WWSTGVGHPDCKVIIFMGL-TDPNAHRYARHSMVLVPMD----TPGITVER--MLPTMGF 231
Query: 234 YNTM-DNGVLRFEHVRIPRNQML 255
Y+ +GV+ F++VR+P + +
Sbjct: 232 YDEPGGHGVVSFDNVRLPADAFI 254
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 104 GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFV 163
G+ +P I G+D ++++ ++IG TE G GS+V L T A + D +V
Sbjct: 117 GIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAV--REGDTYV 174
Query: 164 IHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGF-IVQLRSLEDHSPLPGITI 222
++ K + V A +T G G+ V L ++ +S PG
Sbjct: 175 VNGA-------------KTFITSGVRADFVTTAVRTGGPGYGGVSLLVIDKNS--PGF-- 217
Query: 223 GDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 255
++ + + D L F VR+P + ++
Sbjct: 218 -EVSRRLDKMGWRCSDTAELSFVDVRVPADNLV 249
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172
G++EQ ++WL + I C+ TE S+ +E + D D +VI+
Sbjct: 131 GSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRD--EDSYVIN-----GK 183
Query: 173 KWWPGGLG 180
KWW G G
Sbjct: 184 KWWSSGAG 191
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 340 SAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 399
+A FR W + D + L A F+ + C G+ + E ++
Sbjct: 352 TALLFRLARAWDR--RADAKEALWARLFTPAAKFVICKRGMPF---------VAEAMEVL 400
Query: 400 GGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440
GG GY S LP L+ +EG ++ L V R L K
Sbjct: 401 GGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441
>pdb|1EV1|1 Chain 1, Echovirus 1
Length = 281
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 217 LPGITIGDIGMKFGNG----------AYNTMDN-GVLRFEHVRIPRNQMLMRVSQVTREG 265
+P I+IG+ F +G + T++N G L F HV P + V+++ +
Sbjct: 183 IPFISIGNAYSNFYDGWSHFSQAGVYGFTTLNNMGQLFFRHVNKPNPAAITSVARIYFKP 242
Query: 266 KYVQSNVPR 274
K+V++ VPR
Sbjct: 243 KHVRAWVPR 251
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTA 153
G++ Q + +LP E +G + TE G GS+ L+T A
Sbjct: 104 GSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKA 143
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR 460
G Y C SGLPE A + C G +++ + + R + NM VG + GR
Sbjct: 76 GDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNV-----NMRVG--IHSGR 128
Query: 461 AEQLMQCHCGVQKAEDW 477
HCGV W
Sbjct: 129 V------HCGVLGLRKW 139
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR 460
G Y C SGLPE A + C G +++ + + R + NM VG + GR
Sbjct: 84 GDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNV-----NMRVGIHS--GR 136
Query: 461 AEQLMQCHCGVQKAEDW 477
HCGV W
Sbjct: 137 V------HCGVLGLRKW 147
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR 460
G Y C SGLPE A + C G +++ + + R + NM VG + GR
Sbjct: 84 GDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNV-----NMRVG--IHSGR 136
Query: 461 AEQLMQCHCGVQKAEDW 477
HCGV W
Sbjct: 137 V------HCGVLGLRKW 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,283,418
Number of Sequences: 62578
Number of extensions: 625004
Number of successful extensions: 1204
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 42
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)