Query 009460
Match_columns 534
No_of_seqs 383 out of 2566
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0136 Acyl-CoA oxidase [Lipi 100.0 6E-103 1E-107 810.1 40.5 522 1-533 9-540 (670)
2 PLN02443 acyl-coenzyme A oxida 100.0 7.4E-98 2E-102 817.6 56.0 533 1-533 1-533 (664)
3 PTZ00460 acyl-CoA dehydrogenas 100.0 2.1E-92 4.6E-97 773.5 53.1 511 5-533 2-521 (646)
4 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 2.6E-90 5.7E-95 700.0 38.5 518 5-533 19-561 (661)
5 PLN02312 acyl-CoA oxidase 100.0 5.8E-88 1.3E-92 741.3 50.7 503 11-533 46-583 (680)
6 cd01150 AXO Peroxisomal acyl-C 100.0 2.4E-87 5.1E-92 734.6 53.2 493 6-533 2-509 (610)
7 PLN02636 acyl-coenzyme A oxida 100.0 2.5E-87 5.5E-92 737.9 49.7 508 12-533 48-586 (686)
8 KOG0141 Isovaleryl-CoA dehydro 100.0 1.7E-62 3.7E-67 466.3 21.8 373 11-441 27-420 (421)
9 KOG0139 Short-chain acyl-CoA d 100.0 1.7E-62 3.6E-67 474.2 18.4 342 28-428 38-398 (398)
10 KOG0140 Medium-chain acyl-CoA 100.0 2.6E-60 5.7E-65 451.1 21.5 360 25-443 26-407 (408)
11 TIGR03203 pimD_small pimeloyl- 100.0 9.3E-55 2E-59 454.6 30.2 352 28-436 5-374 (378)
12 cd01162 IBD Isobutyryl-CoA deh 100.0 3.3E-51 7.2E-56 428.1 32.7 354 28-440 2-374 (375)
13 cd01161 VLCAD Very long chain 100.0 1.9E-51 4E-56 434.7 31.0 366 18-441 20-407 (409)
14 cd01151 GCD Glutaryl-CoA dehyd 100.0 7.1E-51 1.5E-55 427.2 32.2 353 27-441 13-383 (386)
15 cd01160 LCAD Long chain acyl-C 100.0 7.2E-51 1.6E-55 425.2 31.7 352 29-438 1-371 (372)
16 PRK03354 crotonobetainyl-CoA d 100.0 1.2E-50 2.6E-55 424.6 32.4 358 27-442 5-379 (380)
17 cd01157 MCAD Medium chain acyl 100.0 1.3E-50 2.8E-55 424.2 31.6 355 28-440 2-377 (378)
18 PLN02526 acyl-coenzyme A oxida 100.0 2.6E-50 5.6E-55 425.9 30.8 365 15-441 14-399 (412)
19 PRK12341 putative acyl-CoA deh 100.0 4.9E-50 1.1E-54 420.2 31.9 356 27-441 5-379 (381)
20 cd01156 IVD Isovaleryl-CoA deh 100.0 5E-50 1.1E-54 419.5 31.8 355 28-440 3-376 (376)
21 PTZ00461 isovaleryl-CoA dehydr 100.0 4.8E-50 1E-54 423.9 31.7 358 21-441 32-408 (410)
22 PLN02519 isovaleryl-CoA dehydr 100.0 7.4E-50 1.6E-54 421.7 32.2 358 28-441 27-403 (404)
23 PRK09463 fadE acyl-CoA dehydro 100.0 7.8E-50 1.7E-54 441.3 31.9 367 12-434 62-466 (777)
24 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 1.3E-49 2.9E-54 415.6 31.0 350 28-437 2-370 (372)
25 TIGR03204 pimC_large pimeloyl- 100.0 7.7E-50 1.7E-54 420.1 29.3 359 27-440 4-394 (395)
26 PRK13026 acyl-CoA dehydrogenas 100.0 3.2E-49 6.9E-54 434.8 29.7 333 68-448 109-488 (774)
27 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.3E-48 5.1E-53 409.2 33.5 360 31-440 3-394 (394)
28 cd01158 SCAD_SBCAD Short chain 100.0 4.5E-48 9.8E-53 404.2 31.1 354 29-440 1-373 (373)
29 KOG0138 Glutaryl-CoA dehydroge 100.0 8.5E-49 1.8E-53 371.6 21.9 353 28-440 56-426 (432)
30 COG1960 CaiA Acyl-CoA dehydrog 100.0 9.2E-48 2E-52 404.7 29.9 359 29-442 7-390 (393)
31 PLN02876 acyl-CoA dehydrogenas 100.0 1.1E-46 2.5E-51 428.5 32.4 367 25-441 400-819 (822)
32 KOG0137 Very-long-chain acyl-C 100.0 2.6E-46 5.6E-51 383.7 30.2 324 70-438 112-458 (634)
33 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.1E-45 2.4E-50 379.1 31.1 326 29-436 1-327 (327)
34 PTZ00456 acyl-CoA dehydrogenas 100.0 5.3E-46 1.1E-50 406.6 30.5 341 70-439 102-479 (622)
35 cd01154 AidB Proteins involved 100.0 1.3E-45 2.8E-50 390.5 31.6 302 97-439 111-417 (418)
36 cd01152 ACAD_fadE6_17_26 Putat 100.0 4.1E-46 8.9E-51 390.4 27.2 353 29-440 1-380 (380)
37 cd01153 ACAD_fadE5 Putative ac 100.0 9.5E-45 2.1E-49 383.2 29.7 340 70-436 39-404 (407)
38 PRK11561 isovaleryl CoA dehydr 100.0 1.1E-44 2.3E-49 388.2 29.5 286 105-441 139-442 (538)
39 cd01163 DszC Dibenzothiophene 100.0 7.9E-42 1.7E-46 357.6 26.9 328 70-439 25-372 (377)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 2.6E-36 5.7E-41 321.5 35.1 279 71-431 54-362 (520)
41 cd01159 NcnH Naphthocyclinone 100.0 3.1E-37 6.7E-42 322.1 24.2 327 70-440 25-370 (370)
42 KOG1469 Predicted acyl-CoA deh 100.0 6.7E-36 1.4E-40 280.0 21.3 287 109-441 91-383 (392)
43 TIGR02309 HpaB-1 4-hydroxyphen 99.9 2.3E-20 5.1E-25 198.7 24.1 248 111-406 119-391 (477)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 1.2E-20 2.7E-25 170.9 17.9 145 276-439 6-150 (150)
45 PF14749 Acyl-CoA_ox_N: Acyl-c 99.6 1.8E-15 3.9E-20 133.2 11.8 116 17-132 1-125 (125)
46 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 2.5E-13 5.3E-18 100.0 5.1 51 134-192 1-51 (52)
47 PF08028 Acyl-CoA_dh_2: Acyl-C 99.3 1.9E-11 4.1E-16 108.9 12.9 130 286-426 1-132 (134)
48 PF02771 Acyl-CoA_dh_N: Acyl-C 98.5 6.8E-08 1.5E-12 82.9 3.0 94 28-130 1-113 (113)
49 TIGR02310 HpaB-2 4-hydroxyphen 98.5 2.1E-05 4.6E-10 84.4 21.6 239 118-401 137-398 (519)
50 COG2368 Aromatic ring hydroxyl 98.4 3.5E-05 7.6E-10 80.2 20.4 250 113-408 125-401 (493)
51 PF11794 HpaB_N: 4-hydroxyphen 97.0 0.004 8.8E-08 61.4 10.0 120 118-255 124-263 (264)
52 PF01756 ACOX: Acyl-CoA oxidas 95.9 0.01 2.2E-07 55.8 4.8 29 505-533 34-62 (187)
53 PTZ00457 acyl-CoA dehydrogenas 86.9 6 0.00013 43.3 11.4 86 300-406 418-503 (520)
54 PF03241 HpaB: 4-hydroxyphenyl 84.4 16 0.00035 34.8 11.8 109 323-438 43-159 (205)
55 KOG0137 Very-long-chain acyl-C 71.9 45 0.00097 36.5 11.5 68 323-401 536-603 (634)
56 PRK09463 fadE acyl-CoA dehydro 24.6 5.2E+02 0.011 30.0 10.5 98 323-440 562-662 (777)
57 COG1902 NemA NADH:flavin oxido 24.0 45 0.00097 34.8 1.7 59 385-448 155-215 (363)
58 PF12584 TRAPPC10: Trafficking 22.1 2.1E+02 0.0045 25.5 5.5 28 198-227 88-115 (147)
No 1
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=6.5e-103 Score=810.08 Aligned_cols=522 Identities=53% Similarity=0.838 Sum_probs=486.7
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCC-CCcccCCCHHHHHHHHHHHHHHHHHHHHHc
Q 009460 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFR-KDNRAMLSRKELFKNTLRKAAYAWKRIIEL 79 (534)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (534)
+|| ||++||.+++||+++|+.+|+|++|...+|+++++.+.++|.|. ..+..+++++|.++...++...+++.+.++
T Consensus 9 ~Np--dl~~ER~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~~~~~~sr~E~~~~~~Rk~~~~~~~~~el 86 (670)
T KOG0136|consen 9 DNP--DLQKERAKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKKPLPFMSREERYENTVRKLARLTKKMREL 86 (670)
T ss_pred CCh--HHHHHHhhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466 99999999999999999999999999999999999999999998 556689999999999999988999888888
Q ss_pred CCCHHH-----HHHHhhhcCCcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEE
Q 009460 80 RLSEEE-----ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTAT 154 (534)
Q Consensus 80 g~~~~~-----gg~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~ 154 (534)
.+.... +.....+...+.|+.+|++||.++|...||+||.++||++..+.+|+||||+||+|||||+++++||||
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~At 166 (670)
T KOG0136|consen 87 QDNTDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTAT 166 (670)
T ss_pred HhcCcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeee
Confidence 774221 222233344578899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccC
Q 009460 155 FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 234 (534)
Q Consensus 155 ~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~ 234 (534)
||+.+++||||||+.++.|||+|+||+.|+|++|+|+++++|+++|+|.|+||+||++||.++|||+|+|+++||| +
T Consensus 167 yD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg---~ 243 (670)
T KOG0136|consen 167 YDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMG---F 243 (670)
T ss_pred ecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCcccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 009460 235 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 314 (534)
Q Consensus 235 ~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg 314 (534)
+|.|||++.|||||||++|||+++++|.++|.|+.++.++ +.|++|...|..++....-.+.+|++||+||+.+|+||.
T Consensus 244 ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~ 322 (670)
T KOG0136|consen 244 NGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSE 322 (670)
T ss_pred cCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999988886 999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHH
Q 009460 315 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 394 (534)
Q Consensus 315 ~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~ 394 (534)
..++.+|++|+|||++|+||+|.+|..||+++++.++.++|.+....+..++.+.++++|++++++|+.+|+.+.+.+++
T Consensus 323 i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~ 402 (670)
T KOG0136|consen 323 IRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQ 402 (670)
T ss_pred CCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHhhhhcCCCCcc
Q 009460 395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 474 (534)
Q Consensus 395 ~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 474 (534)
||+.||||||++.++++.+|..+.+.|||||+|.||+.|+||+|+|.+.+..+|++..+++.|+....... ......
T Consensus 403 ~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~~~---~~~~~~ 479 (670)
T KOG0136|consen 403 CRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASALKP---QLISGA 479 (670)
T ss_pred HHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhcccCc---cccccc
Confidence 99999999999999999999999999999999999999999999999999999998888999997654322 122334
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHH----hccCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 475 EDWLNPSAILEAFEARAIRMSVACAQNL----SKFTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
.++.+ + ++++|+++|++++..+++++ +++.+...+||.++++|+++|++||++++++
T Consensus 480 ~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~H~~~~vvk 540 (670)
T KOG0136|consen 480 GDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARAHCRLFVVK 540 (670)
T ss_pred cchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66767 6 99999999999999999986 4467889999999999999999999999986
No 2
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=7.4e-98 Score=817.63 Aligned_cols=533 Identities=88% Similarity=1.388 Sum_probs=484.4
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 009460 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (534)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 80 (534)
|.|+.||++||++++||+++|+.+|+|+++..++|+++++++.++|.|...+..++++++.++....+..++.+.+.++|
T Consensus 1 ~~~~~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~~ 80 (664)
T PLN02443 1 MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKELFKNTLRKAAHAWKRIIELR 80 (664)
T ss_pred CCchHHHHHHHhcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77889999999999999999999999999999999999999999999998767789999999999998889999998999
Q ss_pred CCHHHHHHHhhhcCCcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCC
Q 009460 81 LSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (534)
Q Consensus 81 ~~~~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~ 160 (534)
|...+.......++.+.++.+|+++|+++|..+||+||+++|||++.+|++++|||+|||+||||+++++||||||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~ 160 (664)
T PLN02443 81 LTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD 160 (664)
T ss_pred CCchhHHHHHHhcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCC
Confidence 97655444444556667788999999999999999999999999999999999999999999999999999999999899
Q ss_pred eEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcc
Q 009460 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (534)
Q Consensus 161 ~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~ 240 (534)
+|||||||++|+||||+|++..||+++|+||++++++++|+|+|+||+||+++|.+.|||+++++++|+|.+++++.|||
T Consensus 161 efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng 240 (664)
T PLN02443 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG 240 (664)
T ss_pred EEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcce
Confidence 99999999999999999966899999999999888888999999999999999999999999999999994444679999
Q ss_pred eeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC
Q 009460 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 320 (534)
Q Consensus 241 ~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~ 320 (534)
+|.|||||||++||||++++|+++|.+..+..+.++.+++|..+|+.+++.++|++++|+++|++|+.+|+|||++++.+
T Consensus 241 ~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~ 320 (664)
T PLN02443 241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGP 320 (664)
T ss_pred EEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCcc
Confidence 99999999999999999999999999987655444889999999999999999999999999999999999999977767
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 009460 321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (534)
Q Consensus 321 e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~G 400 (534)
|.|+++||.+|+||+|+++.+++++++.+++++.+++....+..++.+..++.|..++++|+++++.+.+++++|+|+||
T Consensus 321 e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cG 400 (664)
T PLN02443 321 ETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCG 400 (664)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 89999999999999999999999999999999998875554444444444578999999999999999999999999999
Q ss_pred cccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHhhhhcCCCCcccccCCh
Q 009460 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480 (534)
Q Consensus 401 G~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (534)
|+||+++++++++++|++..+|+||+|+++++++|+++++.+++..+++++.++..||.+............+..++.|+
T Consensus 401 G~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 480 (664)
T PLN02443 401 GHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQCRCGVQTAEDWLNP 480 (664)
T ss_pred CccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhhhhcccccccccccccCH
Confidence 99999999999999999999999999999999999999999988888888888889998765544444444556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 481 ~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
++++++|++|+++++..+++++.++.+..++||.++++++++|+||+++++++
T Consensus 481 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~~~~ 533 (664)
T PLN02443 481 SVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAHCQLIVVS 533 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998777888999999999999999999999885
No 3
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-92 Score=773.47 Aligned_cols=511 Identities=34% Similarity=0.569 Sum_probs=449.6
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcc-cCCCHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 009460 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNR-AMLSRKELFKNTLRKAAYAWKRIIELRLSE 83 (534)
Q Consensus 5 ~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 83 (534)
.+|++||++++||+++|+.+|+|++|+.+++.++++++.++|.|..... .+++++++++....+..++.+.+ ++ +
T Consensus 2 ~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~lsr~e~~~~~~~k~~~~~~~~---~~-~ 77 (646)
T PTZ00460 2 QMLEEARKQVQFPVLEMTHLLYGNKEQFETFLERQKFIDNEPMFKVHPDYYNWSRQDQILLNAEKTREAHKHL---NL-A 77 (646)
T ss_pred hhHHHhhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHhcCcccccCCCcccCCHHHHHHHHHHHHHHHHHHc---Cc-h
Confidence 4799999999999999999999999999999999999999999987633 56999999999888877777653 22 2
Q ss_pred HHHHHHhhhc--CCcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCe
Q 009460 84 EEASMLRSSV--DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161 (534)
Q Consensus 84 ~~gg~~~~~~--~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~ 161 (534)
+..-....++ +.+.++.+|+++|+++|..+||+||+++|||++.+|++++|||+|||+||||+++++|||++|+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~de 157 (646)
T PTZ00460 78 NPNYYTPNLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNE 157 (646)
T ss_pred hhhHHhhhhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCE
Confidence 2111112233 34567889999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcce
Q 009460 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (534)
Q Consensus 162 ~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~ 241 (534)
|||||||++|+||||+|+|..||+++|+||++++++++|+++||||+||+++|.+.|||+++++++|+| +++.||++
T Consensus 158 fvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G---~~~~dng~ 234 (646)
T PTZ00460 158 FVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMG---YAVKDNGF 234 (646)
T ss_pred EEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccC---cCCCCceE
Confidence 999999999999999986799999999999988778899999999999999999999999999999999 99999999
Q ss_pred eeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCc
Q 009460 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (534)
Q Consensus 242 v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e 321 (534)
|.|||||||++||||++++|+++|.|..++..+ ..+..|..+|+.+++.++|++++|+++|++|+++|+|||++ +++|
T Consensus 235 l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~-~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~-~~~E 312 (646)
T PTZ00460 235 LSFDHYRIPLDSLLARYIKVSEDGQVERQGNPK-VSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTND-NKQE 312 (646)
T ss_pred EEeceEEECHHHhCCcccccCCCCccccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC-CCCC
Confidence 999999999999999999999999877654444 78899999999999999999999999999999999999974 4569
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009460 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (534)
Q Consensus 322 ~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG 401 (534)
.||++||++|+||+|+++.+++++++++++++++++........+....++.|..++++|+++++.+.+++++|+|+|||
T Consensus 313 ~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG 392 (646)
T PTZ00460 313 NSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGG 392 (646)
T ss_pred CcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998765544333333345678999999999999999999999999999
Q ss_pred ccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCC-CCCccccccccchhHhhhhcCCCCcccccCCh
Q 009460 402 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYG-NMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480 (534)
Q Consensus 402 ~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (534)
+||+++++++++|+|+++.+|+||+|+++++++|+.+++.+.+..++ +.+.++..||.+.... ..++.+.
T Consensus 393 ~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~ 463 (646)
T PTZ00460 393 HGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKVPEYFNFLSHITEK---------LADQTTI 463 (646)
T ss_pred ccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHhhhh---------ccccCCh
Confidence 99999999999999999999999999999999999999999876554 3455577888654211 1235567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----ccCChHHHHHH-HHHHHHHHHHHHHHHhhhc
Q 009460 481 SAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAE-LAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 481 ~~~~~~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~-~~~~~~~~a~a~~~~~~~~ 533 (534)
+++.++|++|+.+++..+++++. ++++.+++||. ++++++++|+||+++++++
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~awn~~~~~~l~~~a~ah~~~~~~~ 521 (646)
T PTZ00460 464 ESLGQLLGLNCTILTIYAAKKIMDHINTGKDFQQSWDTKSGIALASAASRFIEYFNYL 521 (646)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888887764 35677899999 8999999999999999885
No 4
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-90 Score=700.02 Aligned_cols=518 Identities=35% Similarity=0.528 Sum_probs=439.6
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC--
Q 009460 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS-- 82 (534)
Q Consensus 5 ~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-- 82 (534)
.+|..+|++++||+++|..+++|-.+..+++.++.+.++++|.+-..+...++.+++++..+. ++|+ +.+.|..
T Consensus 19 ~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~---r~~~-l~~~gv~~~ 94 (661)
T KOG0135|consen 19 SPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMK---RIKR-LVELGVFKF 94 (661)
T ss_pred CCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHH---HHHH-HHHhccCcc
Confidence 378999999999999999999993347899999999999999665556677888888876543 3343 4444542
Q ss_pred -------HHH-----HHHHhhhcCC--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCC
Q 009460 83 -------EEE-----ASMLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG 148 (534)
Q Consensus 83 -------~~~-----gg~~~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~ 148 (534)
+.. --...++.+. +.-+.+|+.+|+.++..+||+.+++ |+.++.+.+++|||||||++||||+++
T Consensus 95 ~~~~~~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~ 173 (661)
T KOG0135|consen 95 WLVEDGPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKG 173 (661)
T ss_pred eeecCchHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccc
Confidence 110 0111233343 4457899999999999999998877 999999999999999999999999999
Q ss_pred CceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCc
Q 009460 149 LETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 228 (534)
Q Consensus 149 ~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k 228 (534)
|+|||||||.+++||||||+.++.|+||||+|.+|+|++|||++...|.++|+|.|||||||++|+...|||.|+|++.|
T Consensus 174 I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K 253 (661)
T KOG0135|consen 174 IQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHK 253 (661)
T ss_pred eeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCc---chh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009460 229 FGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV---PRQ-LLYGTMVYVRQTIVADASCALSRAVCIAT 304 (534)
Q Consensus 229 ~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~---~~~-~~~~~l~~~r~~~aa~~~g~~~~al~~av 304 (534)
.| ++|+|||++.|+|||||++|||+++++|+++|.|.++-. .++ ...+.+..+|+.++..++|.++-+++||+
T Consensus 254 ~G---lnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAI 330 (661)
T KOG0135|consen 254 IG---LNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAI 330 (661)
T ss_pred cc---cccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhh
Confidence 99 999999999999999999999999999999999998422 222 56788899999999999999999999999
Q ss_pred HhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHH
Q 009460 305 RYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLT 384 (534)
Q Consensus 305 ~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~ 384 (534)
||+..|+|||++.+++|+||++||.+|+||.|+++.+++++++..++...|.+.+.+...+.. ..++|+++|++|.++
T Consensus 331 RYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n--~keiHALsSg~K~~~ 408 (661)
T KOG0135|consen 331 RYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVN--SKEIHALSSGLKPVA 408 (661)
T ss_pred hhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHhccchhh
Confidence 999999999998888999999999999999999999999999999999999887766544332 478999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHh
Q 009460 385 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL 464 (534)
Q Consensus 385 t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (534)
||...+++++||++||||||..+++++.+..|.++++||||||+|++||+++.||++|...+.+ .|.++..|++.....
T Consensus 409 TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~~~~e-~p~~~~~~ln~~~s~ 487 (661)
T KOG0135|consen 409 TWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVSQKKE-TPLSFVGFLNEYPSS 487 (661)
T ss_pred hHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHHhhcc-CCchHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999874443 345567777666554
Q ss_pred hhhcCCCCcc-cccCChHHHHHHHHHHHHHHHHHHHHH---HhccCChHHHHHHHHHHHHH-HHHHHHHHhhhc
Q 009460 465 MQCHCGVQKA-EDWLNPSAILEAFEARAIRMSVACAQN---LSKFTNQEEGFAELAADLVE-AAVAHCQLIVVS 533 (534)
Q Consensus 465 ~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~-~a~a~~~~~~~~ 533 (534)
.....+.... ..+.++++++..+..|...|++..+.+ ++++.+.+++||.++++..+ +|.||+|+.|+.
T Consensus 488 ~~~~~~s~~~~d~l~~~~f~~~~~~l~~~lLl~t~a~~~~~l~~g~~~fea~n~~q~h~~~~La~a~~E~~il~ 561 (661)
T KOG0135|consen 488 PDPVLASQLVSDTLRSSQFQLCYFWLRCHLLLETVASRERQLQSGLSSFEARNKCQVHQLRELALAFTEHTILQ 561 (661)
T ss_pred CCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4443333333 344456777744444444455555544 45677899999998876655 999999999874
No 5
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=5.8e-88 Score=741.29 Aligned_cols=503 Identities=30% Similarity=0.472 Sum_probs=429.7
Q ss_pred hccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC---------cccCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 009460 11 RKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD---------NRAMLSRKELFKNTLRKAAYAWKRIIELRL 81 (534)
Q Consensus 11 r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 81 (534)
+++++||+++|+.+|+| ++.++|+++++++.++|.|... +..++++++.++... +.|+.+.+.|+
T Consensus 46 ~~~~sf~~~~l~~~l~g--~~~~~r~~~~~~~~~~p~f~~~~~~~~~~~~~~~~~s~~~~~~~~~----~~~~~l~~~g~ 119 (680)
T PLN02312 46 NESYAFDVKEMRKLLDG--HNLEDRDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREITM----KRILYLLERGV 119 (680)
T ss_pred cccCCCCHHHHHHHhCC--ccHHHHHHHHHHHhcCccccccccccccccCCccCCCHHHHHHhHH----HHHHHHHHhhh
Confidence 78999999999999998 5688999999999999999653 445678888876554 44555555553
Q ss_pred -----CHHH-HHHH--------hhhcCC--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCC
Q 009460 82 -----SEEE-ASML--------RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145 (534)
Q Consensus 82 -----~~~~-gg~~--------~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd 145 (534)
+++. ++.. .+..+. +.++.+|+++|+++|..+||++||++|||++.+|++++|||+|||+||||
T Consensus 120 ~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSd 199 (680)
T PLN02312 120 FRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSN 199 (680)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcc
Confidence 2221 1101 111222 23567888899999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeC
Q 009460 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDI 225 (534)
Q Consensus 146 ~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~ 225 (534)
+++++|||+||+++|+|||||||++|+||||+|++..|++++|+||++++++++|+|+|+|||||.++ .+.|||+|+++
T Consensus 200 v~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~-~~~PGV~ig~~ 278 (680)
T PLN02312 200 VRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDG-NICPNIRIADC 278 (680)
T ss_pred hhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCC-CCCCCEEeccC
Confidence 99999999999888999999999999999999944899999999999888788999999999999754 78999999999
Q ss_pred CCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCc---ch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009460 226 GMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV---PR-QLLYGTMVYVRQTIVADASCALSRAVC 301 (534)
Q Consensus 226 ~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~---~~-~~~~~~l~~~r~~~aa~~~g~~~~al~ 301 (534)
++|+| +++.||++|.|||||||++||||++++|+++|.|.++.. .. ..++..|..+|+.+++.++|++++|++
T Consensus 279 ~~K~G---~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~ 355 (680)
T PLN02312 279 GHKIG---LNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLA 355 (680)
T ss_pred CCccc---ccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999998522 22 245688999999999999999999999
Q ss_pred HHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHH
Q 009460 302 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 381 (534)
Q Consensus 302 ~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK 381 (534)
+|++|+++|+|||++++++|.||++||++|+||+||++.+|++++.+.++.+.+++. ......+.|..++++|
T Consensus 356 iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~-------~~~~~~~~~~~as~aK 428 (680)
T PLN02312 356 IAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR-------TPESNKAIHVVSSGFK 428 (680)
T ss_pred HHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccccchhHHHHHHHH
Confidence 999999999999987777899999999999999999999999999888887776531 1112246889999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCcc-c-ccccc
Q 009460 382 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVG-T-TTYMG 459 (534)
Q Consensus 382 ~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~-~-~~~l~ 459 (534)
+++++.+.+++++|+|+|||+||++++++++++||+++.+|+||+|++|++++|+++++.+++.++++++.+ + .+|+.
T Consensus 429 a~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~~~~~~ 508 (680)
T PLN02312 429 AVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEYVSAKKRNKPFKGLGLEHMN 508 (680)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999988877776544 2 56663
Q ss_pred chhHhhhhcCCCCcccccCChHHHHHHHHHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 460 RAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
... .......+..++.|+++++++|++|+++++..+++++.+ +.+.+++||.+++.++++|+||+++++++
T Consensus 509 ~~~---~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~i~~ 583 (680)
T PLN02312 509 GPR---PVIPTQLTSSTLRDSQFQLNLFCLRERDLLERFASEVSELQSKGESREFAFLLSYQLAEDLGRAFSERAILQ 583 (680)
T ss_pred ccc---ccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 211 000112245689999999999999999999999988754 34568999999999999999999999985
No 6
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=2.4e-87 Score=734.64 Aligned_cols=493 Identities=45% Similarity=0.715 Sum_probs=433.9
Q ss_pred chHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC-cccCCCHHHHHHHHHHHHHHHHHHHHHcCCC-H
Q 009460 6 QLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD-NRAMLSRKELFKNTLRKAAYAWKRIIELRLS-E 83 (534)
Q Consensus 6 ~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~ 83 (534)
||++||++++||+++|+.+|+|+++..+.++++.+++.++|.|... ...+++|++.++....+..++...+.++++. .
T Consensus 2 ~l~~eR~~~~f~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (610)
T cd01150 2 DLDKERASATFDWKALTHILEGGEENLRRKREVERELESDPLFQRELPSKHLSREELYEELKRKAKTDVERMGELMADDP 81 (610)
T ss_pred hhHHhhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 8999999999999999999999999899999999999999999865 2346778888877766666667667777773 2
Q ss_pred HHHHHHh---hhcCC--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCC
Q 009460 84 EEASMLR---SSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (534)
Q Consensus 84 ~~gg~~~---~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~ 158 (534)
....... ...+. +.++.+|+++|+++|..+||+||+++|||++.+|+++||||+|||+||||+++++|||+||++
T Consensus 82 ~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~ 161 (610)
T cd01150 82 EKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPL 161 (610)
T ss_pred HHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCC
Confidence 2222111 11222 346788999999999999999999999999999999999999999999999999999999977
Q ss_pred CCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCC
Q 009460 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD 238 (534)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~ 238 (534)
+++||||||+++|+||||+|++..|++++|+||+.++++++|+++|+||+||+++|.+.|||+++++++|+| +++.|
T Consensus 162 t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G---~~g~d 238 (610)
T cd01150 162 TQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMG---LNGVD 238 (610)
T ss_pred CCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccC---CCCCC
Confidence 799999999999999999996677999999999988788899999999999999999999999999999999 99999
Q ss_pred cceeeeCccccCccccccccccccCCCceeccCc-ch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 009460 239 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-PR---QLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 314 (534)
Q Consensus 239 ~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~-~~---~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg 314 (534)
|+.|.|||||||++|||+++++|+++|.|..+.. +. ..+...+..+|+.+++.++|.+++|+++|++|+++|+|||
T Consensus 239 ng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg 318 (610)
T cd01150 239 NGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFG 318 (610)
T ss_pred eEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecC
Confidence 9999999999999999999999999999988644 22 1455667788999999999999999999999999999999
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHH
Q 009460 315 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 394 (534)
Q Consensus 315 ~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~ 394 (534)
++++++|.||++||++|+||+|+++.+++++++..++...+.+....++.++.+..++.|..++++|+++++.+.+++++
T Consensus 319 ~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~ 398 (610)
T cd01150 319 PKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQE 398 (610)
T ss_pred CCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98788899999999999999999999999999888887776655544444444445678999999999999999999999
Q ss_pred HHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHhhhhcCCCCcc
Q 009460 395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 474 (534)
Q Consensus 395 ~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 474 (534)
|+|+|||+||+.+++++++++|+++.+|+||+|+++++++++++++.+.+..+
T Consensus 399 ~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~~~~--------------------------- 451 (610)
T cd01150 399 CREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQAFS--------------------------- 451 (610)
T ss_pred HHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhhhcC---------------------------
Confidence 99999999999999999999999999999999999999999999998765321
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 475 EDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
+++++++|++|+.+++..+++++.+ +++.+++||.++++++++|+||+++++++
T Consensus 452 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~awN~~~~~l~~~a~Ah~~~~~~~ 509 (610)
T cd01150 452 -----LADYLEAYEWLAAHLLRHAAAQLEKLKKSGSGSFEARNNSQVHLRCAAKAHTEYTVLQ 509 (610)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999988887743 45778999999999999999999999875
No 7
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.5e-87 Score=737.92 Aligned_cols=508 Identities=33% Similarity=0.508 Sum_probs=425.9
Q ss_pred ccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHH
Q 009460 12 KKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEA 86 (534)
Q Consensus 12 ~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~g 86 (534)
++++||+++|+.+|++ ++.++++++++|+.++|.|.... ..+.++..+.. ..++|+.+.++|+ ++++.
T Consensus 48 ~~~~f~~~~l~~~l~~--~~~~~r~~v~~~~~~~~~~~~~~--~~~~~~~~e~~---~~~l~~~~~~~g~~~~~~~~~~~ 120 (686)
T PLN02636 48 IKLSVNTEKLSLYMRG--KHRDIQEKIYEFFNSRPDLQTPV--EISKDEHRELC---MRQLTGLVREAGIRPMKYLVEDP 120 (686)
T ss_pred ccCCCCHHHHHhhcCC--cHHHHHHHHHHHHHhCccccCCc--hhhHHHhhhhH---HHHHHHHHHhcCccccccccCCH
Confidence 5799999999999987 45689999999999998774321 12222222211 1467777888887 22211
Q ss_pred H---HH---hhhcCC--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCC
Q 009460 87 S---ML---RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (534)
Q Consensus 87 g---~~---~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~ 158 (534)
. .. .+..+. +.++.+|+++|+++|..+||+|||++|||++.+|++++|||+|||+||||+++++|||+||++
T Consensus 121 ~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~ 200 (686)
T PLN02636 121 AKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPL 200 (686)
T ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCC
Confidence 1 11 111122 345678889999999999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEecCCCCccccccCCCCCCccEEEEEEEeccC------CCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcc
Q 009460 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD------GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 232 (534)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~------~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~ 232 (534)
+|+||||||+++|+||||+|++..||+++|+||++++ ++++|+|+||||+||+++|.+.|||+|+++++|+|
T Consensus 201 ~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G-- 278 (686)
T PLN02636 201 TDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVG-- 278 (686)
T ss_pred CCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccC--
Confidence 8999999999999999999954569999999999742 24689999999999999999999999999999999
Q ss_pred cCCCCCcceeeeCccccCccccccccccccCCCceeccC--cch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009460 233 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSN--VPR--QLLYGTMVYVRQTIVADASCALSRAVCIATRYSA 308 (534)
Q Consensus 233 ~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~--~~~--~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~ 308 (534)
+++.|||+|.|||||||++||||++++|+++|.|.++. ..+ ..+++.|..+|+.+++.++|++++|+++|++|+.
T Consensus 279 -~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~ 357 (686)
T PLN02636 279 -LNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSL 357 (686)
T ss_pred -CCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998731 111 2678899999999999999999999999999999
Q ss_pred cccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHH
Q 009460 309 VRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTAT 388 (534)
Q Consensus 309 ~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a 388 (534)
+|+|||+ ++++|.||++||.+|++|+||++.+++++++...+...+..... .++.....+.|..++++|+++++.+
T Consensus 358 ~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~as~aK~~~t~~a 433 (686)
T PLN02636 358 LRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKK---THDDQLVADVHALSAGLKAYITSYT 433 (686)
T ss_pred cCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccchhhHHHHHHHHHHHHHHH
Confidence 9999997 45678899999999999999999999998887777666553322 2232333568999999999999999
Q ss_pred HHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHh-hhh
Q 009460 389 ADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL-MQC 467 (534)
Q Consensus 389 ~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 467 (534)
.+++++|+|+|||+||+++++++++|||+++.+|+||+|+|+++++|++|++.+++..++..+.++..||.+.... ...
T Consensus 434 ~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 513 (686)
T PLN02636 434 AKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYKEKFQGGTLSVTWNYLRESMNTYLSQ 513 (686)
T ss_pred HHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999998877777777788898654311 111
Q ss_pred cCC----CCcccccCChHHHHHHHHHHHHHHHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 468 HCG----VQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK---FTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 468 ~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
..+ ..+..++.|+++++++|++|+++++..++.++.+ ..+.+++||.++++++++|+||+++++++
T Consensus 514 ~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~awn~~~~~l~~~a~ah~~~~~~~ 586 (686)
T PLN02636 514 PNPVTTRWEGEEHLRDPKFQLDAFRYRTSRLLQTAALRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILA 586 (686)
T ss_pred cccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1334569999999999999999999999988864 33568999999999999999999999985
No 8
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-62 Score=466.27 Aligned_cols=373 Identities=21% Similarity=0.294 Sum_probs=320.7
Q ss_pred hccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHH
Q 009460 11 RKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEE 85 (534)
Q Consensus 11 r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~ 85 (534)
|..+...++.- .+--++||..||+++++|++++-.... ..+++...+ +..+++|+.+.++|+ |+++
T Consensus 27 r~~s~~~~~d~--~~g~~~e~~~~r~sv~kF~qeelaP~a---~eidk~n~~----~~~r~~WkklG~~gllGita~~~~ 97 (421)
T KOG0141|consen 27 RTPSAYPVDDS--MFGLSDEQDQLRESVRKFFQEELAPHA---SEIDKANEF----KDLREFWKKLGKQGLLGITAPEEY 97 (421)
T ss_pred hcccccccchh--hcCCCHHHHHHHHHHHHHHHHhhcchh---hhhhhcCCc----chHHHHHHHhhhcCcccccchhhh
Confidence 33344444433 233467999999999999987644211 122222222 224679999999887 6888
Q ss_pred HHHHhhhcCC--------------cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCce
Q 009460 86 ASMLRSSVDE--------------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLET 151 (534)
Q Consensus 86 gg~~~~~~~~--------------~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~t 151 (534)
||.+.++++. ...|+.|.+++..-|.+.||+||+++|||++.+||.+|++|||||++|||+.++++
T Consensus 98 GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~ 177 (421)
T KOG0141|consen 98 GGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKL 177 (421)
T ss_pred CCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeee
Confidence 8888776431 34578899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccC--CCCCceEEEEEEeccCCCCCCCCCeEEeeCCCcc
Q 009460 152 TATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 229 (534)
Q Consensus 152 tA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~--~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~ 229 (534)
.|+.+ ++.|||| |.|.||+| |+.||.+||+|.++.. ...+|+++|||+ +.+||++..+.-+|+
T Consensus 178 ~Aek~--g~~yiLN-----GsK~witN-G~~advliVyAkTd~~a~~~~hGIt~FiVE-------kgm~GFs~~~KLdKl 242 (421)
T KOG0141|consen 178 KAEKK--GDDYILN-----GSKFWITN-GPDADVLIVYAKTDHSAVPPSHGITAFIVE-------KGMPGFSTAQKLDKL 242 (421)
T ss_pred eceec--CCcEEec-----CcEEEEec-CCCCcEEEEEEecCCCCCCCcCceEEEEEc-------CCCcccccchhhHhh
Confidence 99988 8999999 99999999 9999999999999876 356899999999 999999999999999
Q ss_pred CcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009460 230 GNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAV 309 (534)
Q Consensus 230 G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~ 309 (534)
| |++.|++++.|+|++||++|+||. ++.++- +++..+...|+.+++..+|.++.+++.+..|+++
T Consensus 243 G---mrgsdTcELvFed~~vpas~ilg~------enkGvY------vlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~q 307 (421)
T KOG0141|consen 243 G---MRGSDTCELVFEDCKVPASNILGE------ENKGVY------VLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQ 307 (421)
T ss_pred c---CCCCcchheehhhccCcHHHhcCc------CCceEE------EEecCCChhHhhhccCchHHHHHHHHHhhhHHHH
Confidence 9 999999999999999999999995 444433 4456677899999999999999999999999999
Q ss_pred ccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHH
Q 009460 310 RRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATA 389 (534)
Q Consensus 310 R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~ 389 (534)
|+|||+ +|++||.+|+++|+|...+.+.|+.++.++..-|. +. .....+++++.|+++.+.
T Consensus 308 R~afgk-------~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~-------g~-----~~~kdcag~il~aaE~~t 368 (421)
T KOG0141|consen 308 RKAFGK-------KIGHFQLLQGKLADMYTTLCASRSYVYNVARACDA-------GN-----VDPKDCAGVILYAAEKAT 368 (421)
T ss_pred HHHhCC-------chhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-------CC-----CChhhhhhhhhhHhhhhH
Confidence 999999 99999999999999999999999999998876652 22 123448899999999999
Q ss_pred HHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 390 DGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 390 ~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
.++-+|+|++||.||.+++|.++++||++...++.|++++.+..|+|.+.+.
T Consensus 369 qVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 369 QVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred HHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999998764
No 9
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-62 Score=474.15 Aligned_cols=342 Identities=23% Similarity=0.301 Sum_probs=303.2
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC--------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (534)
+|++.++.+++++|..+. +.+.. ..++++.++ ...+.+.+.++|+ |+++||.|..++.
T Consensus 38 ~E~e~~l~~tvrkfa~~~-i~Plv--~~mD~~~~~------~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEi 108 (398)
T KOG0139|consen 38 SETEQMLQKTVRKFAQEE-IKPLV--REMDRESRY------PASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEI 108 (398)
T ss_pred CcHHHHHHHHHHHHHHHh-cchHH--HhhhhhccC------CHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHH
Confidence 367889999999998653 22211 223343333 3456778888887 7999999877642
Q ss_pred ----C--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 95 ----E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 95 ----~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
. ++.+.+|..|..+.|..+||+|||++|+|.+ .|+.++|||++||+.|||+..+.|+|+.| ||.|+||
T Consensus 109 sk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~--Gd~~viN--- 182 (398)
T KOG0139|consen 109 SKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKD--GDDYVIN--- 182 (398)
T ss_pred hccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhc--CCeEEEe---
Confidence 2 3445778889999999999999999888875 67889999999999999999999999988 8999999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+||+| +..|++++|||.++...+++|+++|+|| ++.||++++...+|+| +|+++++.+.|||||
T Consensus 183 --GsKmWItN-~~~A~~~lVfan~d~~~~~Kgit~fiV~-------rd~~Gl~~~k~eDKLG---mRaSsTcql~fedVr 249 (398)
T KOG0139|consen 183 --GSKMWITN-AGEADWFLVFANADPSKGYKGITCFIVP-------RDTPGLSLGKKEDKLG---MRASSTCQLHFEDVR 249 (398)
T ss_pred --cceeeecC-CcccceEEEEEecChhhccCceeEEEee-------CCCCCcccCCcccccc---ccccceeeEEecccc
Confidence 99999999 9999999999999887788999999999 8999999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++||. .|.+++ .....++.+|+.++++++|.++.|++.++.|+++|.|||+ +|.+||
T Consensus 250 Vpks~IlGe------~G~Gyk------yAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk-------~l~d~Q 310 (398)
T KOG0139|consen 250 VPKSSILGE------YGKGYK------YAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGK-------RLLDFQ 310 (398)
T ss_pred ccchhhccc------CCcchH------HHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcc-------hhhhHH
Confidence 999999995 788877 7888999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+||++|++.+++|++|++.|+++++-++. .....+++|+|.++++.+..++..|+|..||.||+.++
T Consensus 311 ~iQhqiA~~~teiEaaRlL~ynaAr~k~~G------------~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~ 378 (398)
T KOG0139|consen 311 GLQHQIADMATEIEAARLLVYNAARMKDQG------------LPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDF 378 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------CchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999877531 23556799999999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHH
Q 009460 409 GLPELFAVYVPACTYEGDNI 428 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~ 428 (534)
+.+++|||+++..||||+++
T Consensus 379 paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 379 PAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred cHHHHhhhceeeeeecCCCC
Confidence 99999999999999999863
No 10
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-60 Score=451.14 Aligned_cols=360 Identities=22% Similarity=0.299 Sum_probs=313.2
Q ss_pred HcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCCc---
Q 009460 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDEP--- 96 (534)
Q Consensus 25 ~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~~--- 96 (534)
+.-+++|.++++.+++|-.++-. +.. ..++....++. ++.+.-.++|+ |+++||.+.+.++..
T Consensus 26 f~L~e~qke~q~~A~kFa~~e~~-P~a--ae~Dk~ge~P~------~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~ 96 (408)
T KOG0140|consen 26 FGLTEDQKEFQEAARKFAKDEMI-PNA--AEYDKSGEFPW------EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIF 96 (408)
T ss_pred cCcchHHHHHHHHHHHHHHHhhc-cch--hhhcccCCCcH------HHHHHHHHcccCcccCccccCCCCchhHHHHHHH
Confidence 35567999999999999876532 211 12222233332 22333345676 688899887765431
Q ss_pred -----------chhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEe
Q 009460 97 -----------AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (534)
Q Consensus 97 -----------~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLn 165 (534)
..+..| +|+.+.|...|++|||++|||+++...++++||+||||+|||+.++.|+|+.. ||+||||
T Consensus 97 E~LayGCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~Kk--GDeYiiN 173 (408)
T KOG0140|consen 97 EALAYGCTGIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN 173 (408)
T ss_pred HHHHccchhHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhc--CCEEEEc
Confidence 122233 58889999999999999999999999999999999999999999999999977 9999999
Q ss_pred cCCCCccccccCCCCCCccEEEEEEEeccCC---CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCccee
Q 009460 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITDG---QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 242 (534)
Q Consensus 166 tp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~---~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v 242 (534)
|.|.||+| +.+|+|++|+||++++. ..++++.|+|+ .+.||++.+....+|| .+..|+--|
T Consensus 174 -----GsKawItg-~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe-------~dTpGlt~GkKE~nmG---qr~sdTR~i 237 (408)
T KOG0140|consen 174 -----GSKAWITG-AGHANWYFVLARTDPDPKTPAGKAFTAFIVE-------GDTPGLTRGKKEKNMG---QRCSDTRGI 237 (408)
T ss_pred -----Cceeeeec-CCccceEEEEEecCCCCCCCCCcceEEEEEe-------CCCCCcCcChhhhccc---ccCCCCcee
Confidence 99999999 89999999999998864 45789999999 8999999999999999 999999999
Q ss_pred eeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcc
Q 009460 243 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 322 (534)
Q Consensus 243 ~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~ 322 (534)
+|+||+||.+|+||. +|.++. +.++++..+|..+++.++|.+.++++.+++|+.+|+|||.
T Consensus 238 tFEDvrVP~~Nvlg~------~G~GFk------vAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~------- 298 (408)
T KOG0140|consen 238 TFEDVRVPKENVLGA------PGAGFK------VAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGT------- 298 (408)
T ss_pred eeeecccchhccccC------CCccce------ehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCc-------
Confidence 999999999999995 898887 8888999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 009460 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (534)
Q Consensus 323 ~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~ 402 (534)
||.++|.+|..|++|...++.+|.+.+.+++.+|+ +. ++ ...+|++|.++++.+..++..++|++||.
T Consensus 299 ~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~-------~r----~~-sy~aSiAK~fA~D~an~~at~AvQifGG~ 366 (408)
T KOG0140|consen 299 PIANHQAVQFMLADMAINLELARLMTRNAAWEVDN-------GR----RN-SYYASIAKLFATDTANQAATNAVQIFGGN 366 (408)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC----cc-hHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999987762 11 23 56799999999999999999999999999
Q ss_pred cccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHH
Q 009460 403 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 443 (534)
Q Consensus 403 Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~ 443 (534)
||..++|+++++||++++.+|||+|+++|..|+|.||..+.
T Consensus 367 Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 367 GFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred CccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998763
No 11
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=9.3e-55 Score=454.62 Aligned_cols=352 Identities=18% Similarity=0.178 Sum_probs=295.2
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------- 95 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~------- 95 (534)
++||.++++++++|+.++..... .+...+....+..++|+.+.++|| |+++||.+.++.+.
T Consensus 5 ~~eq~~l~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel 77 (378)
T TIGR03203 5 SEEQRLLKESVEGLLKTSYDFDS-------RKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEAL 77 (378)
T ss_pred CHHHHHHHHHHHHHHHhhCCHHH-------HHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHH
Confidence 57899999999999987643111 111111112244678999999998 68888877654321
Q ss_pred -----cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 009460 96 -----PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (534)
Q Consensus 96 -----~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~ 170 (534)
+.|+..+..++...|..+|+++||++|||++++|+.++|+++|||++|||+.++.|+|+.+ +|+|+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~--g~~~~l~----- 150 (378)
T TIGR03203 78 GKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKT--GDGWVID----- 150 (378)
T ss_pred hCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEc--CCEEEEE-----
Confidence 2343333334556788999999999999999999999999999999999999999999988 7899999
Q ss_pred ccccccCCCCCCccEEEEEEEeccCC-CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcccc
Q 009460 171 SSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (534)
Q Consensus 171 G~K~~v~~la~~A~~~lV~Ar~~~~~-~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (534)
|+|+||++ +..||+++|+|++..+. ++.|+++|+|| .+.|||++.+...++| + ..+.|.||||+|
T Consensus 151 G~K~~vt~-a~~Ad~~lv~ar~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~g---~---~~~~l~fd~v~v 216 (378)
T TIGR03203 151 GEKFVVLN-GETADTLIVTARTKGARRDRTGIGVFLVP-------AGAKGVTIKGYPTQDG---L---HAADITFTGVVV 216 (378)
T ss_pred eEEEEecC-CccCCEEEEEEecCCCCCCCCceEEEEEE-------CCCCCceeccccccCC---C---ceeeEEECCCcc
Confidence 99999999 89999999999985432 34689999999 7889999988766666 4 458899999999
Q ss_pred CccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHH
Q 009460 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (534)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (534)
|.+++||. .|.++. .+...+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 217 p~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~-------pi~~~Q~ 277 (378)
T TIGR03203 217 GADAAIGD------PENALP------LIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGV-------PIGSFQV 277 (378)
T ss_pred cHHhhcCC------cchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCc-------cchhhHH
Confidence 99999984 455554 6667888999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 009460 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (534)
Q Consensus 330 ~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (534)
+||+|++|.+.+++++++++.+++..+. + ...+....++++|+++++.+.+++++|+|+|||+||+++++
T Consensus 278 vq~~lAdm~~~~e~ar~l~~~aa~~~~~--------~--~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~ 347 (378)
T TIGR03203 278 LQHRAADMFVAVEQARSMAMFATMASDF--------D--DAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAK 347 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccch
Confidence 9999999999999999999998876541 1 01123456889999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccccHHHHHHHHHH
Q 009460 410 LPELFAVYVPACTYEGDNIVLLLQVAR 436 (534)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~ 436 (534)
++++|||++...+++|++++++.+++.
T Consensus 348 ~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 348 IGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999999887
No 12
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=3.3e-51 Score=428.13 Aligned_cols=354 Identities=25% Similarity=0.308 Sum_probs=300.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC--------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (534)
+|+|.++++.+++|+.++..... ..++.......++|+.+.+.|| |+++||.+.+...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l 72 (375)
T cd01162 2 NEEQRAIQEVARAFAAKEMAPHA---------ADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEAL 72 (375)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch---------hhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999977532111 0111112234568999999998 6888887654321
Q ss_pred ----Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 95 ----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 95 ----~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
.+.+ +.+|. ++...+..+|+++|+++|||++.+|+.++|+++|||++|||+..++|+|+++ +++|+||
T Consensus 73 ~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~--- 146 (375)
T cd01162 73 STGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLN--- 146 (375)
T ss_pred HhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEE---
Confidence 1222 23343 5566788899999999999999999999999999999999999999999998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+||++ +..||+++|+|++..+ ...++++|+|| .+.|||++.+.|.++| +++++++.|.||||+
T Consensus 147 --G~k~~vs~-~~~ad~~~v~a~~~~~-~~~~~~~~lv~-------~~~~gv~v~~~~~~~g---~~~~~~~~l~f~~v~ 212 (375)
T cd01162 147 --GSKAFISG-AGDSDVYVVMARTGGE-GPKGISCFVVE-------KGTPGLSFGANEKKMG---WNAQPTRAVIFEDCR 212 (375)
T ss_pred --EEEEEecC-CCCCCEEEEEEEecCC-CCCceEEEEEe-------CCCCCeecCCcccccC---CCCCCeeEEEECceE
Confidence 99999999 8999999999997543 23578899999 7889999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++|+. +|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 213 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~-------~l~~~~ 273 (375)
T cd01162 213 VPVENRLGG------EGQGFG------IAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGK-------PLADFQ 273 (375)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhH
Confidence 999999984 555543 4455677889999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+|+++++|.+.+++++++++.+++.+++ +. ++....++++|+++++.+.++++.|+|+|||+||+.++
T Consensus 274 ~vq~~la~~~~~l~~a~~~~~~a~~~~~~-------~~----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~ 342 (375)
T cd01162 274 ALQFKLADMATELVASRLMVRRAASALDR-------GD----PDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDY 342 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 99999999999999999999999877652 11 12345678899999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++|||++...+++|++++++.++++.+++
T Consensus 343 ~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 343 PVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred hHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998865
No 13
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.9e-51 Score=434.67 Aligned_cols=366 Identities=21% Similarity=0.249 Sum_probs=306.2
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhh
Q 009460 18 VDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSS 92 (534)
Q Consensus 18 ~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~ 92 (534)
++-|+. +-++++.++++.+++|++++..... .++.. ....++|+.+.+.|| |+++||.+.++
T Consensus 20 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~-----~d~~~------~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~ 86 (409)
T cd01161 20 PSVLTE--EQTEELNMLVGPVEKFFEEVNDPAK-----NDQLE------KIPRKTLTQLKELGLFGLQVPEEYGGLGLNN 86 (409)
T ss_pred ccccCc--cCCHHHHHHHHHHHHHHHHhCCchh-----hcccc------CCCHHHHHHHHhCCCCCCCCChhhCCCCCCH
Confidence 445555 3357899999999999987643110 01111 123568999999998 68888866543
Q ss_pred cC-----------Cc--chhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCC
Q 009460 93 VD-----------EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQT 159 (534)
Q Consensus 93 ~~-----------~~--~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~ 159 (534)
.+ .+ .++.+|..+....+..+|+++|+++|||++++|+.++|+++|||++|||+..++|+|++++++
T Consensus 87 ~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g 166 (409)
T cd01161 87 TQYARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDG 166 (409)
T ss_pred HHHHHHHHHHhhChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCC
Confidence 21 11 123455545555678899999999999999999999999999999999999999999997667
Q ss_pred CeEEEecCCCCccccccCCCCCCccEEEEEEEecc---CC-CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCC
Q 009460 160 DEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT---DG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 235 (534)
Q Consensus 160 ~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~---~~-~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~ 235 (534)
++|+|| |+|+|++| +..||+++|.|++.. ++ .+.++++|+|| .+.|||++.+.|.++| ++
T Consensus 167 ~g~~l~-----G~K~~vs~-~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp-------~~~~gv~~~~~~~~~G---~~ 230 (409)
T cd01161 167 KHYVLN-----GSKIWITN-GGIADIFTVFAKTEVKDATGSVKDKITAFIVE-------RSFGGVTNGPPEKKMG---IK 230 (409)
T ss_pred CEEEEE-----eEEEeecC-CCcCCEEEEEEEcCCCCCCCCCCCceEEEEEe-------CCCCCcccCCcccccC---CC
Confidence 889999 99999999 899999999999752 22 23578899999 7789999999999999 99
Q ss_pred CCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 009460 236 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGS 315 (534)
Q Consensus 236 ~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~ 315 (534)
+++++.|.|+||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 231 g~~s~~v~~~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~ 298 (409)
T cd01161 231 GSNTAEVYFEDVKIPVENVLGE------VGDGFK------VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGK 298 (409)
T ss_pred CCCceEEEeccEEECHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc
Confidence 9999999999999999999985 455443 4556788899999999999999999999999999999999
Q ss_pred CCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHH
Q 009460 316 KNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEEC 395 (534)
Q Consensus 316 ~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~ 395 (534)
||.+||.+|++|+++.+.+++++.+++.+++.+++ +. ..+....++++|+++++.+.+++++|
T Consensus 299 -------~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~-------~~---~~~~~~~~~~aK~~a~~~a~~v~~~a 361 (409)
T cd01161 299 -------KIHEFGLIQEKLANMAILQYATESMAYMTSGNMDR-------GL---KAEYQIEAAISKVFASEAAWLVVDEA 361 (409)
T ss_pred -------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC---CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877652 11 12345668999999999999999999
Q ss_pred HHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 396 RKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 396 ~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
+|+|||+||+++++++++|||++...+++|++++++.+|++.+|..
T Consensus 362 ~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 362 IQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998764
No 14
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=7.1e-51 Score=427.21 Aligned_cols=353 Identities=22% Similarity=0.255 Sum_probs=298.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHhhhcC--------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~~~~gg~~~~~~~-------- 94 (534)
-++||.++++.+++|+.+...... .+ .........++|+.+.+.|| |+++||.+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l 83 (386)
T cd01151 13 LTEEERAIRDTAREFCQEELAPRV--------LE-AYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREV 83 (386)
T ss_pred CCHHHHHHHHHHHHHHHHhcCccH--------HH-HHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHH
Confidence 357899999999999987532110 01 11111234578999999886 6888887654421
Q ss_pred ----Cc--chhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 95 ----EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 95 ----~~--~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
.+ .++.+|..++..+|..+|+++|+++|+|++++|++++|+++|||++|||+.++.|+|+++ +++|+||
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 158 (386)
T cd01151 84 ERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLN--- 158 (386)
T ss_pred HhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEE---
Confidence 12 233455555666788999999999999999999999999999999999999999999998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+|+++ +..||+++|+|++..+ .++++|+|| .+.|||++.+.|.++| +++++++.|.|+||+
T Consensus 159 --G~K~~is~-~~~Ad~~lv~ar~~~~---~~~~~flVp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~f~~v~ 222 (386)
T cd01151 159 --GSKTWITN-SPIADVFVVWARNDET---GKIRGFILE-------RGMKGLSAPKIQGKFS---LRASITGEIVMDNVF 222 (386)
T ss_pred --EEEEeecC-CCcCCEEEEEEEECCC---CcEEEEEEc-------CCCCCeecCCCCCCcC---CCCCceeEEEEccEE
Confidence 99999999 8999999999998542 468899999 7789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++++. +.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|
T Consensus 223 Vp~~~~l~~-------~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q 282 (386)
T cd01151 223 VPEENLLPG-------AEGLR------GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGR-------PLAAFQ 282 (386)
T ss_pred eCHHHcCCc-------cccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCC-------chhhhH
Confidence 999999973 22332 3455677889999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+|++|++|.+.+++++.+++++++.+++ +. .....++++|.++++.+.++++.++|+|||+||+.++
T Consensus 283 ~vq~~la~~~~~~eaar~l~~~a~~~~d~-------~~-----~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 350 (386)
T cd01151 283 LVQKKLADMLTEIALGLLACLRVGRLKDQ-------GK-----ATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEY 350 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC
Confidence 99999999999999999999998877652 11 1233578899999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
+++++|||++...+++|++++++..+++.+++.
T Consensus 351 ~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~ 383 (386)
T cd01151 351 HIIRHMVNLESVNTYEGTHDIHALILGRAITGI 383 (386)
T ss_pred HHHHHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998763
No 15
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=7.2e-51 Score=425.19 Aligned_cols=352 Identities=23% Similarity=0.295 Sum_probs=297.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC---------
Q 009460 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD--------- 94 (534)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~--------- 94 (534)
+||.++++.+++|+.+... +. ....+.......++|+.+.++|| |+++||.+.++.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~-~~--------~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la 71 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVA-PF--------HHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELA 71 (372)
T ss_pred ChHHHHHHHHHHHHHHhCc-hh--------HHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH
Confidence 4678999999999987521 10 11112221234678999999998 7888887654421
Q ss_pred ---Ccc-hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 009460 95 ---EPA-FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (534)
Q Consensus 95 ---~~~-~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~ 170 (534)
.+. .+.+|..++...+..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +++|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~----- 144 (372)
T cd01160 72 RAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLN----- 144 (372)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEe-----
Confidence 121 23446556677889999999999999999999999999999999999999999999998 7899999
Q ss_pred ccccccCCCCCCccEEEEEEEeccC-CCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcccc
Q 009460 171 SSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (534)
Q Consensus 171 G~K~~v~~la~~A~~~lV~Ar~~~~-~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (534)
|+|+||+| +..||+++|+|++..+ +.+.++++|+|| .+.|||++.+.|.++| +++++++.|.|+||+|
T Consensus 145 G~k~~vs~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~V 213 (372)
T cd01160 145 GSKTFITN-GMLADVVIVVARTGGEARGAGGISLFLVE-------RGTPGFSRGRKLKKMG---WKAQDTAELFFDDCRV 213 (372)
T ss_pred eEEEEecC-CCccCEEEEEEEeCCCCCCCCceEEEEEe-------CCCCCeecCCcccccc---CCCCCeEEEEecceEc
Confidence 99999999 8999999999998654 334688999999 7789999999999999 9999999999999999
Q ss_pred CccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHH
Q 009460 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (534)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (534)
|.+++|+. ++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q~ 274 (372)
T cd01160 214 PAENLLGE------ENKGFY------YLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGK-------TLAQLQV 274 (372)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHH
Confidence 99999985 444433 4455677889999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 009460 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (534)
Q Consensus 330 ~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (534)
+|++|+++.+.+++++++++.+++.+++ +. .....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 275 vq~~la~~~~~~~~a~~~~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~ 342 (372)
T cd01160 275 VRHKIAELATKVAVTRAFLDNCAWRHEQ-------GR-----LDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYP 342 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCH
Confidence 9999999999999999999988766541 11 12345788999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccccHHHHHHHHHHHH
Q 009460 410 LPELFAVYVPACTYEGDNIVLLLQVARFL 438 (534)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 438 (534)
++++|||++...+++|++++++.+|++.+
T Consensus 343 l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 343 IARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999875
No 16
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.2e-50 Score=424.59 Aligned_cols=358 Identities=18% Similarity=0.151 Sum_probs=297.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (534)
-++||.++++++++|++++..-+. ....+....+..++|+.+.+.|| |+++||.+.++..
T Consensus 5 ~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~ 76 (380)
T PRK03354 5 LNDEQELFVAGIRELMASENWEAY--------FAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWME 76 (380)
T ss_pred CCHHHHHHHHHHHHHHHhccCChh--------HHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHH
Confidence 357899999999999987532111 01112222244678999999998 6888987765422
Q ss_pred -----CcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009460 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (534)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~ 169 (534)
.+.++..+.......|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|+.+ +++|+||
T Consensus 77 la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~ln---- 150 (380)
T PRK03354 77 LGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLN---- 150 (380)
T ss_pred HHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEe----
Confidence 13222222222356788899999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcccc
Q 009460 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (534)
Q Consensus 170 ~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (534)
|+|+|+++ +..||+++|+|++..+.+..++..|+|| .+.|||++. .|+++| +++++++.|.||||+|
T Consensus 151 -G~K~fis~-~~~ad~~~v~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~V 217 (380)
T PRK03354 151 -GSKCFITS-SAYTPYIVVMARDGASPDKPVYTEWFVD-------MSKPGIKVT-KLEKLG---LRMDSCCEITFDDVEL 217 (380)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceeEEEEE-------CCCCceEec-cccccC---CCCCCeEEEEEccEEe
Confidence 99999999 8999999999997533333567889999 778999997 579999 9999999999999999
Q ss_pred CccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHH
Q 009460 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (534)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (534)
|.+++++. +|.++. .....+...|+.+++.++|+++++++++++|+++|+|||+ ||+++|.
T Consensus 218 p~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~ 278 (380)
T PRK03354 218 DEKDMFGR------EGNGFN------RVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGE-------AIGRFQL 278 (380)
T ss_pred cHHHcCCC------CChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHHhHH
Confidence 99999984 454443 3334566788899999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 009460 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (534)
Q Consensus 330 ~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (534)
+|++|++|.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 279 vq~~la~~~~~~~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 346 (380)
T PRK03354 279 IQEKFAHMAIKLNSMKNMLYEAAWKADN-------GT-----ITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHR 346 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCh
Confidence 9999999999999999999998766541 11 11244788999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccccHHHHHHHHHHHHHHHH
Q 009460 410 LPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (534)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 442 (534)
++++|||++...+++|++++++..+++.+++.|
T Consensus 347 l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 347 ISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQY 379 (380)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998765
No 17
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.3e-50 Score=424.25 Aligned_cols=355 Identities=22% Similarity=0.299 Sum_probs=296.8
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------- 95 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~------- 95 (534)
++||.++++++++|+.+...... .+ .+....+..++|+.+.+.|| |+++||.+.++.+.
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~--------~~-~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l 72 (378)
T cd01157 2 TEQQKEFQETARKFAREEIIPVA--------AE-YDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEEL 72 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcccch--------HH-HHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999987643111 01 11111234578999999998 78898876554221
Q ss_pred -----cchhhhh-hhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009460 96 -----PAFTDLH-WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (534)
Q Consensus 96 -----~~~~~~~-~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~ 169 (534)
+.++.++ ..+....+..+|+++||++|||++.+|++++++++|||++|||+.++.|+|+.+ +++|+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~---- 146 (378)
T cd01157 73 AYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN---- 146 (378)
T ss_pred HhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEe----
Confidence 2222222 123444566789999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEeccCC---CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCc
Q 009460 170 TSSKWWPGGLGKVSTHAVVYARLITDG---QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (534)
Q Consensus 170 ~G~K~~v~~la~~A~~~lV~Ar~~~~~---~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~ 246 (534)
|+|+|+++ +..||+++|+|+++.++ +..++.+|+|| .+.|||++.+.|.++| +++++++.|.|||
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~s~~~~~~~ 214 (378)
T cd01157 147 -GQKMWITN-GGKANWYFLLARSDPDPKCPASKAFTGFIVE-------ADTPGIQPGRKELNMG---QRCSDTRGITFED 214 (378)
T ss_pred -eEEEeecC-CccCCEEEEEEEeCCcccCCCCCceEEEEEc-------CCCCCeeccCcccccC---CCCCCceEEEecc
Confidence 99999999 89999999999986432 13578899999 7789999999999999 9999999999999
Q ss_pred cccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccc
Q 009460 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (534)
Q Consensus 247 vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~ 326 (534)
|+||.+++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 215 v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~-------~i~~ 275 (378)
T cd01157 215 VRVPKENVLIG------EGAGFK------IAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGK-------LIAE 275 (378)
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-------cHHH
Confidence 99999999984 454443 4455677789999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 009460 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (534)
Q Consensus 327 ~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~ 406 (534)
||.+||+|++|.+.+++++++++.+++.++. +. .....++++|+++++.+.++++.|+|+|||+||++
T Consensus 276 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 343 (378)
T cd01157 276 HQAVSFMLADMAMKVELARLAYQRAAWEVDS-------GR-----RNTYYASIAKAFAADIANQLATDAVQIFGGNGFNS 343 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 9999999999999999999999998876641 11 12345678999999999999999999999999999
Q ss_pred cCChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 407 ~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++++|||++...+++|++++++..+++.++.
T Consensus 344 ~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 344 EYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred CCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998864
No 18
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.6e-50 Score=425.94 Aligned_cols=365 Identities=22% Similarity=0.287 Sum_probs=301.9
Q ss_pred CCCHHHHHHH-HcC--ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHH
Q 009460 15 QFDVDEMKIV-WAG--SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEAS 87 (534)
Q Consensus 15 ~f~~~~m~~~-~~~--~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----~~~gg 87 (534)
-|.+.-|++. ++. ++||.++++.+++|+.++..... .+. .....+..++|+.+.++||. +++||
T Consensus 14 ~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~--------~~~-~~~~~~p~~~~~~l~~~G~~~~~v~~~GG 84 (412)
T PLN02526 14 IFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIM--------TEY-WEKAEFPFHIIPKLGSLGIAGGTIKGYGC 84 (412)
T ss_pred CCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccch--------HHH-HHhCCCCHHHHHHHHHCCCCcCcccccCC
Confidence 3444444333 333 57899999999999987532110 011 11112345789999999985 56777
Q ss_pred HHhhhcC------------Ccc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEE
Q 009460 88 MLRSSVD------------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTA 153 (534)
Q Consensus 88 ~~~~~~~------------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA 153 (534)
.+.++.+ .+. .+.+|..++...|..+|+++||++|||++++|++++|+++|||++|||+.++.|+|
T Consensus 85 ~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a 164 (412)
T PLN02526 85 PGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTA 164 (412)
T ss_pred CCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEE
Confidence 6654321 121 23345556666799999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCccc
Q 009460 154 TFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233 (534)
Q Consensus 154 ~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~ 233 (534)
+++ +++|+|| |+|+||++ +..||+++|+|++..+ .++++|+|| .+.|||++.+.|.++|
T Consensus 165 ~~~--~gg~~ln-----G~K~~vs~-~~~Ad~~lv~a~~~~~---~~~~~flV~-------~~~~Gv~~~~~~~~~G--- 223 (412)
T PLN02526 165 TKV--EGGWILN-----GQKRWIGN-STFADVLVIFARNTTT---NQINGFIVK-------KGAPGLKATKIENKIG--- 223 (412)
T ss_pred EEE--CCEEEEE-----EEEeeecC-CCccCEEEEEEEeCCC---CCeEEEEEc-------CCCCCeEcCCCCCccC---
Confidence 998 7899999 99999999 8999999999997532 368899999 7789999999999999
Q ss_pred CCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009460 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 313 (534)
Q Consensus 234 ~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qf 313 (534)
+++++++.|.||||+||.+++|+. .+ .+. .....+...|+.+++.++|+++++++.+++|+++|+||
T Consensus 224 ~r~t~s~~v~f~~v~Vp~~~~l~~------~~-~~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~f 290 (412)
T PLN02526 224 LRMVQNGDIVLKDVFVPDEDRLPG------VN-SFQ------DTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 290 (412)
T ss_pred cCCCCeeEEEEeeEEECHHHhCCC------cc-cHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeC
Confidence 999999999999999999999974 22 121 33456778999999999999999999999999999999
Q ss_pred CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHH
Q 009460 314 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIE 393 (534)
Q Consensus 314 g~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~ 393 (534)
|+ ||++||.+||++++|.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++
T Consensus 291 g~-------~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~~ 351 (412)
T PLN02526 291 GA-------PLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYES-------GK-----MTPGHASLGKAWITKKARETVA 351 (412)
T ss_pred CC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CChHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999998877652 11 1133478999999999999999
Q ss_pred HHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 394 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 394 ~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
.|+|+|||+||+++++++++|||++..++++|+++++++.+++.+++.
T Consensus 352 ~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 352 LGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999764
No 19
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-50 Score=420.18 Aligned_cols=356 Identities=17% Similarity=0.152 Sum_probs=297.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (534)
-++|+.++++.++.|+.++-.-+ .....+....+..++|+.+.+.|| |+++||.+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~ 76 (381)
T PRK12341 5 LTEEQELLLASIRELITRNFPEE--------YFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEE 76 (381)
T ss_pred CCHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHH
Confidence 35788999999999998752111 011112222244678999999998 7888887765421
Q ss_pred -----CcchhhhhhhchHHHHhcCCCHHHHHHHHHHH-hcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLA-YKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l-~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
.+. ..++..+....|..+|+++||++|||++ .+|+.++|+++|||++|||+..++|+|+.+ +++|+||
T Consensus 77 la~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~ln--- 150 (381)
T PRK12341 77 VSKCGAPA-FLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLN--- 150 (381)
T ss_pred HhhcChhH-HHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEE---
Confidence 122 2233335566788899999999999998 599999999999999999999999999987 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCC-CCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcc
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~-~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~v 247 (534)
|+|+|++| +..||+++|+|++..++. ..++.+|+|| .+.|||++. .|+++| +++++++.|.|+||
T Consensus 151 --G~K~~is~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~-------~~~~gv~~~-~~~~~G---~~~~~~~~v~~~~v 216 (381)
T PRK12341 151 --GQKTFITG-AKEYPYMLVLARDPQPKDPKKAFTLWWVD-------SSKPGIKIN-PLHKIG---WHMLSTCEVYLDNV 216 (381)
T ss_pred --eEEEEEcC-CccCCEEEEEEEcCCCCCCCCceEEEEEe-------CCCCceeec-cccccc---CCCCCceEEEECcE
Confidence 99999999 899999999999765432 3578899999 778999995 589999 99999999999999
Q ss_pred ccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccch
Q 009460 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (534)
Q Consensus 248 rVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~ 327 (534)
+||.+++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+|
T Consensus 217 ~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~ 277 (381)
T PRK12341 217 EVEESDLVGE------EGMGFL------NVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGK-------PIGHN 277 (381)
T ss_pred EecHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-------cHHHh
Confidence 9999999985 454433 3344677889999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 009460 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (534)
Q Consensus 328 q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~ 407 (534)
|.+|++|+++.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.++|+|||+||..+
T Consensus 278 ~~v~~~la~~~~~~~aar~~~~~a~~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~ 345 (381)
T PRK12341 278 QLIQEKLTLMAIKIENMRNMVYKVAWQADN-------GQ-----SLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDE 345 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 999999999999999999999998766541 11 123457899999999999999999999999999999
Q ss_pred CChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 408 ~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
++++++|||++...+++|+++++++++++.+++.
T Consensus 346 ~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 346 ARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred CHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999865
No 20
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=5e-50 Score=419.45 Aligned_cols=355 Identities=21% Similarity=0.266 Sum_probs=300.5
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC--------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (534)
++|+.++++++++|+.++..... ...+........+|+.+.+.|| |+++||.+.++.+
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l 73 (376)
T cd01156 3 DDEIEMLRQSVREFAQKEIAPLA---------AKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEI 73 (376)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999987532110 1111111234568999999998 6888887654321
Q ss_pred ----Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 95 ----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 95 ----~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
.+.+ +..|..++...|..+|+++|+++|||++.+|+.++++++|||++|||+..++|+|+.+ +++|+||
T Consensus 74 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~--- 148 (376)
T cd01156 74 SRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLN--- 148 (376)
T ss_pred hccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEE---
Confidence 1322 3345555666789999999999999999999999999999999999999999999988 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+|+++ +..||+++|+|++..++...++.+|+|| .+.|||++.+.|+++| +++++++.|.|+||+
T Consensus 149 --G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~ 215 (376)
T cd01156 149 --GSKMWITN-GPDADTLVVYAKTDPSAGAHGITAFIVE-------KGMPGFSRAQKLDKLG---MRGSNTCELVFEDCE 215 (376)
T ss_pred --EEEEEecC-CCcCCEEEEEEEeCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---CCCCCceEEEeCceE
Confidence 99999999 8999999999997655445678999999 7789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++|+. .+.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||
T Consensus 216 Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~ 276 (376)
T cd01156 216 VPEENILGG------ENKGVY------VLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQ-------PIGEFQ 276 (376)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCc-------chHHhH
Confidence 999999985 444443 4556778899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+|+++++|.+.+++++++++.+++.+++ +. .....++.+|+++++.+.++++.++|+|||+||++++
T Consensus 277 ~v~~~la~~~~~l~aar~~~~~aa~~~d~-------~~-----~~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 344 (376)
T cd01156 277 LVQGKLADMYTRLNASRSYLYTVAKACDR-------GN-----MDPKDAAGVILYAAEKATQVALDAIQILGGNGYINDY 344 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 99999999999999999999999876652 11 1123467789999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++|||++...+++|++++++..|++.++|
T Consensus 345 ~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 345 PTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998864
No 21
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-50 Score=423.94 Aligned_cols=358 Identities=20% Similarity=0.235 Sum_probs=299.6
Q ss_pred HHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-
Q 009460 21 MKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD- 94 (534)
Q Consensus 21 m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~- 94 (534)
|+.+ .-++++.++++.+++|+.+...... ...+....+..++|+.+.+.|| |+++||.+.+..+
T Consensus 32 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~ 101 (410)
T PTZ00461 32 MDLY-NPTPEHAALRETVAKFSREVVDKHA---------REDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAA 101 (410)
T ss_pred cccC-CCCHHHHHHHHHHHHHHHHhCCccH---------HHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHH
Confidence 5433 4457889999999999977532111 0111112344678999999998 6888887654321
Q ss_pred -----------C--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCe
Q 009460 95 -----------E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161 (534)
Q Consensus 95 -----------~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~ 161 (534)
. +.++..|..++...+..+|+++||++|||++.+|+.++|+++|||++|||+.++.|+|+++. +++
T Consensus 102 ~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~-~gg 180 (410)
T PTZ00461 102 VIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS-NGN 180 (410)
T ss_pred HHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcC-CCe
Confidence 1 12334454456667888999999999999999999999999999999999999999999872 247
Q ss_pred EEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcce
Q 009460 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (534)
Q Consensus 162 ~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~ 241 (534)
|+|| |+|+||+| +..||+++|+|+++ .++.+|+|| .+.|||++.+.|+++| +++++++.
T Consensus 181 ~~L~-----G~K~~vs~-a~~Ad~~lv~a~~~-----~~~~~flVp-------~~~~Gv~v~~~~~~~G---~r~~~~~~ 239 (410)
T PTZ00461 181 YVLN-----GSKIWITN-GTVADVFLIYAKVD-----GKITAFVVE-------RGTKGFTQGPKIDKCG---MRASHMCQ 239 (410)
T ss_pred EEEE-----eEEEeECC-CccCCEEEEEEEeC-----CceEEEEEe-------CCCCCeecCCCCcccC---CCCCceEE
Confidence 9999 99999999 89999999999963 247899999 7789999999999999 99999999
Q ss_pred eeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCc
Q 009460 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (534)
Q Consensus 242 v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e 321 (534)
|.|+||+||.+++|+. +|.++. .....+...|+.+++.++|+++++++++++|+++|+|||+
T Consensus 240 l~f~~v~Vp~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~------ 301 (410)
T PTZ00461 240 LFFEDVVVPAENLLGE------EGKGMV------GMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGK------ 301 (410)
T ss_pred EEEcceecCHHHhCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCc------
Confidence 9999999999999985 454443 4456678899999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009460 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (534)
Q Consensus 322 ~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG 401 (534)
||++||.+|++|+++.+.+++++.+++.+++.++. ++ .....++++|.++++.+.++++.++|+|||
T Consensus 302 -~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg 368 (410)
T PTZ00461 302 -PISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHP-------GN-----KNRLGSDAAKLFATPIAKKVADSAIQVMGG 368 (410)
T ss_pred -CHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988765531 11 123456789999999999999999999999
Q ss_pred ccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 402 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 402 ~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
+||+.+++++++|||++...+++|++++++..+++.+++.
T Consensus 369 ~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 369 MGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred cccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998764
No 22
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=7.4e-50 Score=421.69 Aligned_cols=358 Identities=20% Similarity=0.270 Sum_probs=300.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhc---------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV--------- 93 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~--------- 93 (534)
++++.++++.+++|+.+...... . ..++...+ .....+|+.+.+.|| |+++||.+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~a-~--~~d~~~~~----p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~l 99 (404)
T PLN02519 27 DDTQLQFKESVQQFAQENIAPHA-A--AIDATNSF----PKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEI 99 (404)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch-H--HHHhcCCC----CchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHH
Confidence 46889999999999987532111 0 00111111 112247999999998 688888765432
Q ss_pred ---CCcch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 94 ---DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 94 ---~~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
+.+.+ +.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 100 a~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~ln--- 174 (404)
T PLN02519 100 SRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERV--DGGYVLN--- 174 (404)
T ss_pred hhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEe--CCEEEEE---
Confidence 11222 3446556667888999999999999999999999999999999999999999999988 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+|+++ +..||+++|+|+++.++++.|+.+|+|| .+.|||++.+.|+++| +++++++.|.|+||+
T Consensus 175 --G~K~~vs~-a~~ad~~~v~a~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~G---~rgt~s~~v~f~~v~ 241 (404)
T PLN02519 175 --GNKMWCTN-GPVAQTLVVYAKTDVAAGSKGITAFIIE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFENCF 241 (404)
T ss_pred --eEEEeecC-CCcCCEEEEEEEeCCCCCCCeeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEEeCeEE
Confidence 99999999 8999999999998654455688999999 7789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++++. .|.++. .....+...|+.+++.++|+++++++.+++|+++|.|||+ ||.++|
T Consensus 242 Vp~~~~lg~------~~~G~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------pl~~~~ 302 (404)
T PLN02519 242 VPEENVLGQ------EGKGVY------VMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGR-------PIGEFQ 302 (404)
T ss_pred ecHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc-------cHHHhH
Confidence 999999985 444433 3445677889999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+|+++++|.+.+++++++++.++..+++ +. ......+.+|+++++.+.++++.++|+|||+||++++
T Consensus 303 ~v~~~la~~~~~l~aar~~~~~aa~~~~~-------~~-----~~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~ 370 (404)
T PLN02519 303 FIQGKLADMYTSLQSSRSYVYSVARDCDN-------GK-----VDRKDCAGVILCAAERATQVALQAIQCLGGNGYINEY 370 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCC
Confidence 99999999999999999999998876642 11 1123467789999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
+++++|||++...+++|++++++..+++.+|+.
T Consensus 371 ~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 371 PTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred hHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998863
No 23
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=7.8e-50 Score=441.31 Aligned_cols=367 Identities=18% Similarity=0.174 Sum_probs=292.0
Q ss_pred ccCCCCHHHHHHHHc--CChhhHHHHHH-HHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CH
Q 009460 12 KKAQFDVDEMKIVWA--GSRHAFQVSDR-IARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SE 83 (534)
Q Consensus 12 ~~~~f~~~~m~~~~~--~~~e~~~lr~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~ 83 (534)
-+..+|++++-.+=+ -++|+.++++. +++++..-..+.. .+ .......++|+.+.++|| |+
T Consensus 62 F~G~~~~~~l~~~p~~~Ls~ee~~~~d~~v~~l~~~~~~~~~--------~~---~~~~~P~e~w~~L~e~G~~gl~IPe 130 (777)
T PRK09463 62 FSGKPDWKKLLNYPKPTLTAEEQAFLDGPVEELCRMVNDWQI--------TH---ELADLPPEVWQFIKEHGFFGMIIPK 130 (777)
T ss_pred cCCCCChHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--------hc---cccCCCHHHHHHHHHCCCCcCCCch
Confidence 345667776622111 25677788886 6666542111000 00 001123568999999998 68
Q ss_pred HHHHHHhhhcCC------------c--chhhhhhhchH-HHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCC
Q 009460 84 EEASMLRSSVDE------------P--AFTDLHWGMFV-PAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG 148 (534)
Q Consensus 84 ~~gg~~~~~~~~------------~--~~~~~~~~l~~-~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~ 148 (534)
++||.+.+.... + ..+.+|.+++. ..|..+||+|||++|||++++|+.++||++|||++|||+.+
T Consensus 131 eyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~ 210 (777)
T PRK09463 131 EYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGS 210 (777)
T ss_pred hhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCccc
Confidence 999877554211 1 11234544543 47889999999999999999999999999999999999999
Q ss_pred CceEEEEe---CCCC---eEEEecCCCCccccccCCCCCCccEEEEEEEe-ccC-----CCCCceEEEEEEeccCCCCCC
Q 009460 149 LETTATFD---PQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD-----GQDHGVNGFIVQLRSLEDHSP 216 (534)
Q Consensus 149 ~~ttA~~d---~~~~---~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~-~~~-----~~~~G~~~flV~ir~~~~~~~ 216 (534)
+.|+++.. .+++ +|+|| |+|+||++ +..||+++|++++ +++ +++.|+++|||| .+
T Consensus 211 i~Tta~~~~a~~dGd~~~g~vLN-----G~K~~IT~-a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp-------~d 277 (777)
T PRK09463 211 IPDTGVVCKGEWQGEEVLGMRLT-----WNKRYITL-APIATVLGLAFKLYDPDGLLGDKEDLGITCALIP-------TD 277 (777)
T ss_pred ccccceeeeeeecCCcccceEEE-----EEEEeeCC-CCccCEEEEEEEecCcccccCCCCCCceEEEEEE-------CC
Confidence 98765421 1255 59999 99999999 9999999999986 322 235789999999 78
Q ss_pred CCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHH-HHHHHHHHHH
Q 009460 217 LPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR-QTIVADASCA 295 (534)
Q Consensus 217 ~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r-~~~aa~~~g~ 295 (534)
.|||++++.+.++| ++ ..++.|.|+||+||.+++||.. ...|.++. .+...+..+| +.+++.++|+
T Consensus 278 ~pGV~ig~~~~~lG---~r-~~~g~v~fddV~VP~d~lLG~~---~~~G~G~~------~l~~~L~~gR~i~laA~avG~ 344 (777)
T PRK09463 278 TPGVEIGRRHFPLN---VP-FQNGPTRGKDVFIPLDYIIGGP---KMAGQGWR------MLMECLSVGRGISLPSNSTGG 344 (777)
T ss_pred CCCeEecccccccC---cc-cccceEEeeeeecCHHHhcccc---cccChHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 77 5689999999999999999841 11366665 6778899999 8999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHH
Q 009460 296 LSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHA 375 (534)
Q Consensus 296 ~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (534)
++++++.+++|+++|+|||+ ||++||.+||+|++|.+.+|+++++.+.+++.+++ +. ....
T Consensus 345 ar~al~~Av~YA~~R~QFG~-------pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~-------G~-----~~~~ 405 (777)
T PRK09463 345 AKLAALATGAYARIRRQFKL-------PIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDL-------GE-----KPSV 405 (777)
T ss_pred HHHHHHHHHHHHHHHHHcCC-------ChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchH
Confidence 99999999999999999999 99999999999999999999998888877665541 11 1245
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcccccccc--CChhHHhhhhcccccccccHHHHHHHH
Q 009460 376 CTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLLLQV 434 (534)
Q Consensus 376 ~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~--~~l~~~~rd~~~~~~~eG~~~vl~~~i 434 (534)
.++++|+++++.+.+++++|+|+|||+||+.+ ++++++|||++...|+||+|++++..+
T Consensus 406 ~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 406 LSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 68899999999999999999999999999997 899999999999999999999999886
No 24
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=1.3e-49 Score=415.61 Aligned_cols=350 Identities=21% Similarity=0.198 Sum_probs=291.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC--------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (534)
++|+.++++.+++|+.++..... .+ .+.......++|+.+.+.|| |+++||.+.++.+
T Consensus 2 t~~~~~l~~~~~~~~~~~~~p~~--------~~-~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~l 72 (372)
T TIGR03207 2 NEDLQALADTARRFARERIAPGF--------KE-RDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQI 72 (372)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch--------HH-HHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHH
Confidence 36788999999999987532111 01 11112244678999999998 6888887765422
Q ss_pred ----Ccchhhh-hhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009460 95 ----EPAFTDL-HWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (534)
Q Consensus 95 ----~~~~~~~-~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~ 169 (534)
.+.++.. ...++...+..+|+++|+++|||++.+|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 73 a~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~ln---- 146 (372)
T TIGR03207 73 ARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLN---- 146 (372)
T ss_pred HhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEE----
Confidence 1323221 1234555788899999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEeccCC-CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 170 ~G~K~~v~~la~~A~~~lV~Ar~~~~~-~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+||++ +..||+++|+|++..++ ...|+.+|+|| .+.|||++. .|+++| +++++++.|.|+||+
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~ 213 (372)
T TIGR03207 147 -GEKTSISA-ADQADAAVVFARTGSEAEGARGISAFLVP-------MDLPGITRN-RFDCHG---QRAIGRGSIFFENVR 213 (372)
T ss_pred -EEEEEEcC-CCcCCEEEEEEEcCCCCCCCCceEEEEEc-------CCCCCeecC-cchhcc---CCCCCeeEEEECcee
Confidence 99999999 89999999999975432 23578899999 778999986 588999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++|+. ++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||
T Consensus 214 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~-------~i~~~q 274 (372)
T TIGR03207 214 VPADHMLGN------EGQGFV------QVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGK-------PLSAFQ 274 (372)
T ss_pred ccHHHcCCC------CChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhhH
Confidence 999999985 444443 3445678899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+||++++|.+.+++++++++++++.+++ +. .....++++|+++++.+.++++.|+|+|||.||+++
T Consensus 275 ~v~~~la~~~~~~~~ar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~- 341 (372)
T TIGR03207 275 GVSHPLADAETQVEAARLLCLQTLWLKDH-------GL-----PHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG- 341 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-
Confidence 99999999999999999999998776641 11 113457889999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEGDNIVLLLQVARF 437 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ 437 (534)
+++++|||++...+++|++++|+.+|++.
T Consensus 342 ~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 342 DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999873
No 25
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=7.7e-50 Score=420.07 Aligned_cols=359 Identities=16% Similarity=0.164 Sum_probs=287.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (534)
-++||.++++++++|+.++....... .... ...+.. .....+|+.+.++|| |+++||.+.++.+
T Consensus 4 lteeq~~l~~~~r~f~~~~~~~~~~~-~~~~-~~~~~~--~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~ee 79 (395)
T TIGR03204 4 FSKEEQAFRDEVRSFFKDNVPADTRQ-KLVE-GRHLTK--DEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEE 79 (395)
T ss_pred CCHHHHHHHHHHHHHHHHhCChhhhh-hhhc-cCCCCh--HHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHH
Confidence 35789999999999998764321110 0000 000000 111368999999998 6888887655422
Q ss_pred -----CcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009460 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (534)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~ 169 (534)
.+.|+..+..+....|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|+.+ +++|+||
T Consensus 80 lg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~--g~~~~Ln---- 153 (395)
T TIGR03204 80 LQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKK--GDKWIIN---- 153 (395)
T ss_pred HHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEc--CCEEEEe----
Confidence 24454434335556788899999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEeccCC-CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 170 ~G~K~~v~~la~~A~~~lV~Ar~~~~~-~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+||++ +..||+++|+|+++.++ ++.|+++|+|| .+.|||++.+...+.| +.+++.|.|+||+
T Consensus 154 -G~K~~vt~-a~~Ad~~lv~a~~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~~-----~~~~~~v~f~~v~ 219 (395)
T TIGR03204 154 -GQKTWTTL-AQHADWIFCLCRTDPTAKKQMGISFILVD-------MKSKGITVRPIQTIDG-----GVEVNEVFFDDVE 219 (395)
T ss_pred -eEEEeecC-CccCCeEEEEEEeCCCCCCCCCeEEEEEe-------CCCCCeEecChhhccC-----CCceeEEEEcceE
Confidence 99999999 89999999999975332 34678999999 7789999987655443 5678999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++|+. .+.++. .....+...|+.+++ +|.++++++.+++|+++|+|||+ ||++||
T Consensus 220 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~-------~i~~~q 278 (395)
T TIGR03204 220 VPYENLVGE------ENKGWD------YAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGK-------PVIEDA 278 (395)
T ss_pred EcHHHcCCC------CCchHH------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC-------ccccCH
Confidence 999999984 454444 556677788888775 79999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHH----------
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL---------- 398 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~---------- 398 (534)
.+||+|++|.+.+++++.++++++..... .+.. .....++++|.++++.+.++++.|+|+
T Consensus 279 ~vq~~la~~~~~~~aar~l~~~aa~~~~~------~~~~----~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~ 348 (395)
T TIGR03204 279 KFREKLAAVEIELKALELTQLRVVADEGK------HGKG----KPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDV 348 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCC----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 99999999999999999999998632210 0110 112468999999999999999999985
Q ss_pred hcccccccc----CChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 399 CGGHGYLCS----SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 399 ~GG~Gy~~~----~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
|||+||+.+ +++.++|||.+...+++|++++++..|++.+|+
T Consensus 349 ~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 349 HGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred cccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 889999955 579999999999999999999999999998763
No 26
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-49 Score=434.84 Aligned_cols=333 Identities=19% Similarity=0.184 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHcCC-----CHHHHHHHhhhcCC--------------cchhhhhhhch-HHHHhcCCCHHHHHHHHHHHh
Q 009460 68 KAAYAWKRIIELRL-----SEEEASMLRSSVDE--------------PAFTDLHWGMF-VPAIKGQGTDEQHQKWLPLAY 127 (534)
Q Consensus 68 ~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~--------------~~~~~~~~~l~-~~~i~~~Gt~eq~~~~L~~l~ 127 (534)
...++|+.+.++|| |+++||.+.+..+. ...+.+|.+++ +..|..+||+|||++|||+++
T Consensus 109 ~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LA 188 (774)
T PRK13026 109 LPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLA 188 (774)
T ss_pred CCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHh
Confidence 34578999999998 68999877554211 11233444444 357889999999999999999
Q ss_pred cccceeeEecCCCCCCCCCCCCceEEEE---eCCCC---eEEEecCCCCccccccCCCCCCccEEEEEEEe-ccC-----
Q 009460 128 KMEIIGCYAQTELGHGSNVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD----- 195 (534)
Q Consensus 128 ~g~~~~~~a~tE~~~Gsd~~~~~ttA~~---d~~~~---~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~-~~~----- 195 (534)
+|+.++||++|||++|||+.++.|+|+. +.+++ +|+|| |+|+||++ +..||+++|.+++ +++
T Consensus 189 sGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLN-----G~K~~IT~-A~~Ad~~~v~ar~~dpd~~~g~ 262 (774)
T PRK13026 189 DGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLT-----WDKRYITL-APVATVLGLAFKLRDPDGLLGD 262 (774)
T ss_pred CCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEE-----EEEEeecC-ccccCEEEEEEEeeCccccccC
Confidence 9999999999999999999999977653 12255 59999 99999999 9999999888875 332
Q ss_pred CCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchh
Q 009460 196 GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQ 275 (534)
Q Consensus 196 ~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~ 275 (534)
+++.|+++|+|| .+.|||++++.+.++| +++ .++.+.||||+||.+++||.- +..|.++.
T Consensus 263 ~~~~GiT~fLVp-------~d~pGV~ig~~~~~lG---~~~-~~g~v~fdDV~VP~d~lLG~~---~~~G~G~~------ 322 (774)
T PRK13026 263 KKELGITCALIP-------TDHPGVEIGRRHNPLG---MAF-MNGTTRGKDVFIPLDWIIGGP---DYAGRGWR------ 322 (774)
T ss_pred CCCCceEEEEEE-------CCCCCeEeeccccccc---cCc-ccceEEEeeeEccHHHhcCCc---ccCChHHH------
Confidence 235789999999 7899999999999999 776 468999999999999999851 11366666
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHH---HHHHHHHHHHHH
Q 009460 276 LLYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA---SAYAFRFVGEWL 351 (534)
Q Consensus 276 ~~~~~l~~~r-~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a---~~~a~~~~~~~~ 351 (534)
.+...+..+| +.+++.++|+++.+++.+++|+++|+|||+ ||++||.+||+|++|.+ .+++++.+++.+
T Consensus 323 ~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~-------pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a 395 (774)
T PRK13026 323 MLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM-------PIGQFEGVQEALARIAGNTYLLEAARRLTTTG 395 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999 899999999999999999999999999999 99999999999999998 577777777654
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc--CChhHHhhhhcccccccccHHH
Q 009460 352 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIV 429 (534)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~--~~l~~~~rd~~~~~~~eG~~~v 429 (534)
. + .+. .....++++|+++++.+.+++++|+|+|||.||+++ ++++++|||++...+++|+|++
T Consensus 396 ~---D-------~G~-----~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei 460 (774)
T PRK13026 396 L---D-------LGV-----KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANIL 460 (774)
T ss_pred H---H-------CCC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHH
Confidence 2 2 111 134668999999999999999999999999999998 8899999999999999999999
Q ss_pred HHHHHH---------HHHHHHHHHhcCC
Q 009460 430 LLLQVA---------RFLMKTVSQLGYG 448 (534)
Q Consensus 430 l~~~ia---------~~ll~~~~~~~~~ 448 (534)
++..+- -+++++...+...
T Consensus 461 ~R~l~ifgqga~rchp~~~~e~~a~~~~ 488 (774)
T PRK13026 461 TRNLMIFGQGATRCHPYVLAEMEAAAME 488 (774)
T ss_pred HHHHHHhhccHhhCCchHHHHHHHhhCC
Confidence 997442 2567777665443
No 27
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.3e-48 Score=409.15 Aligned_cols=360 Identities=19% Similarity=0.230 Sum_probs=291.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcccCCCHH----H-HHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-----
Q 009460 31 AFQVSDRIARLVASDPAFRKDNRAMLSRK----E-LFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (534)
Q Consensus 31 ~~~lr~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~----- 95 (534)
..++++++|+|++++..... . .+++. + ...........+|+.+.++|| |+++||.+.++.+.
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e 79 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAE-Q--EFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAE 79 (394)
T ss_pred HHHHHHHHHHHHHHhcCccH-H--HHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHH
Confidence 46789999999987632101 0 01100 0 000001233578999999998 68898876554221
Q ss_pred --------cchhhhhh--hchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCC-CCCCCCCCceEEEEeCCCCeEEE
Q 009460 96 --------PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVI 164 (534)
Q Consensus 96 --------~~~~~~~~--~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~-~Gsd~~~~~ttA~~d~~~~~~vL 164 (534)
+.++..+. ......|..+|+++|+++|||++.+|+.++|+++|||+ .|||+..+.|+|+++ +++|+|
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~L 157 (394)
T cd01155 80 ETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVI 157 (394)
T ss_pred HHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEE
Confidence 12222221 12335788999999999999999999999999999997 579999999999998 789999
Q ss_pred ecCCCCccccccCCCCCC--ccEEEEEEEeccCC--CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCC--CC
Q 009460 165 HSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT--MD 238 (534)
Q Consensus 165 ntp~~~G~K~~v~~la~~--A~~~lV~Ar~~~~~--~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~--~~ 238 (534)
| |+|+|++| +.+ |++++|+|+++.++ ++.++.+|+|| .+.|||++.+.|+++| +++ ++
T Consensus 158 n-----G~k~~vs~-~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp-------~~~~Gv~i~~~~~~~G---~r~~~t~ 221 (394)
T cd01155 158 N-----GRKWWSSG-AGDPRCKIAIVMGRTDPDGAPRHRQQSMILVP-------MDTPGVTIIRPLSVFG---YDDAPHG 221 (394)
T ss_pred E-----EEEEEEcC-CCCCCCCEEEEEEEeCCCcCCCCCceEEEEEe-------CCCCCeEeeccccccC---CCCCCCC
Confidence 9 99999999 644 78999999986442 23578899999 7889999999999999 886 56
Q ss_pred cceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 009460 239 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG 318 (534)
Q Consensus 239 ~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~ 318 (534)
++.|.|+||+||.+++|+. +|.++. .....+...|+..++.++|+++++++.+++|+++|+|||+
T Consensus 222 s~~v~f~dv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~--- 286 (394)
T cd01155 222 HAEITFDNVRVPASNLILG------EGRGFE------IAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGK--- 286 (394)
T ss_pred eeEEEEccEEecHHHcCCC------CChHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC---
Confidence 7899999999999999984 454443 5556677889999999999999999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009460 319 GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL 398 (534)
Q Consensus 319 ~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~ 398 (534)
||+++|.+|++|++|.+.+++++++++.+++.+++. . ..+....++++|+++++.+.++++.|+|+
T Consensus 287 ----~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~-------~---~~~~~~~~~~aK~~~~~~a~~~~~~a~~~ 352 (394)
T cd01155 287 ----KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTV-------G---NKAARKEIAMIKVAAPRMALKIIDRAIQV 352 (394)
T ss_pred ----cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C---CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998776521 1 01234568899999999999999999999
Q ss_pred hccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 399 CGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 399 ~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
|||+||+++++++++|||++...+++|++++++.++++.++|
T Consensus 353 ~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 353 HGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred hcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998853
No 28
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=4.5e-48 Score=404.16 Aligned_cols=354 Identities=25% Similarity=0.308 Sum_probs=298.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhc----------
Q 009460 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (534)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~---------- 93 (534)
+|+.++++.+++|+.++..... ...+.........|+.+.+.|| |+++||.+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~ 71 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLA---------AEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELA 71 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccch---------HHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHH
Confidence 3678999999999975432111 0011111234568999999997 688888664432
Q ss_pred --CCcc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009460 94 --DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (534)
Q Consensus 94 --~~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~ 169 (534)
+.+. .+.+|..++...+..+|+++|+++|++++.+|+.++++++|||++||++..+.|+|+++ +++|+||
T Consensus 72 ~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~---- 145 (373)
T cd01158 72 KVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLN---- 145 (373)
T ss_pred hhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEe----
Confidence 1122 23456556667888999999999999999999999999999999999999999999998 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcccc
Q 009460 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (534)
Q Consensus 170 ~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (534)
|+|+|+++ +..||+++|+|++..+++..++.+|+|| .+.|||++.+.|+++| +++++++.|.|+||+|
T Consensus 146 -G~k~~vsg-~~~ad~~lv~a~~~~~~~~~~~~~~lvp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~~~~v~V 213 (373)
T cd01158 146 -GSKMWITN-GGEADFYIVFAVTDPSKGYRGITAFIVE-------RDTPGLSVGKKEDKLG---IRGSSTTELIFEDVRV 213 (373)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---cCCCCceEEEeCcEEe
Confidence 99999999 8999999999997654445678899999 7789999999999999 9999999999999999
Q ss_pred CccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHH
Q 009460 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (534)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (534)
|.+++|+. .+.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ |+.+||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~-------~~~~~~~ 274 (373)
T cd01158 214 PKENILGE------EGEGFK------IAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGK-------PIADFQG 274 (373)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------cHHHhHH
Confidence 99999985 343333 4455677889999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 009460 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (534)
Q Consensus 330 ~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (534)
+|++++++.+.+++++++++.++..++. + .+....++.+|+++++.+.++++.|+++|||.||+.+++
T Consensus 275 v~~~la~~~~~l~aa~~~~~~aa~~~~~-------~-----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~ 342 (373)
T cd01158 275 IQFKLADMATEIEAARLLTYKAARLKDN-------G-----EPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYP 342 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCCh
Confidence 9999999999999999999988776641 1 123455788999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 410 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
++++|||++...+++|++++++.++++.+||
T Consensus 343 l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 343 VERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999975
No 29
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-49 Score=371.58 Aligned_cols=353 Identities=22% Similarity=0.279 Sum_probs=295.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHhh-----h------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEASMLRS-----S------ 92 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----~~~gg~~~~-----~------ 92 (534)
++|+..+|+++|.++++.-.... ....+.+ .++.++...+..+|+. .-||-.+.+ +
T Consensus 56 T~dE~air~~~Reycq~~l~Prv---tea~r~e------~F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEve 126 (432)
T KOG0138|consen 56 TEDEIAIRDTFREYCQERLMPRV---TEANRNE------VFDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREVE 126 (432)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHH---HHHhhhc------cCChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHHH
Confidence 46888999999999976432110 1111222 2345566667777763 112211111 1
Q ss_pred -cCC--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009460 93 -VDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (534)
Q Consensus 93 -~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~ 169 (534)
+|. ...+.+|.++...+|..+|+++||++|||.++.|+.++||++|||.||||+.+++|+|+||..+..|.||
T Consensus 127 RVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklN---- 202 (432)
T KOG0138|consen 127 RVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLN---- 202 (432)
T ss_pred HhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEEC----
Confidence 111 3456789999999999999999999999999999999999999999999999999999999877789999
Q ss_pred CccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcccc
Q 009460 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (534)
Q Consensus 170 ~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (534)
|+|.||+| ++.||++||+||...+++ +.-|||+ ++++|++...+..|++ ++.+.+|.|.+|+|+|
T Consensus 203 -GsKtWI~n-sp~aDl~vvwAr~~t~n~---I~GFi~~-------k~~~GL~apkI~gK~s---LRas~tG~Ilmd~V~V 267 (432)
T KOG0138|consen 203 -GSKTWITN-SPMADLFVVWARCETDNK---IRGFILE-------KGMRGLSAPKIEGKFS---LRASATGMILMDGVEV 267 (432)
T ss_pred -CeeeeecC-CcccceEEEEEecccCCc---eeeEEEe-------cCCCCCcCCCcCCeee---eeecccCceeecCCcC
Confidence 99999999 999999999999876544 6779999 9999999999999999 9999999999999999
Q ss_pred CccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHH
Q 009460 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (534)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (534)
|.+++|-. -..+. -.++.++..|..++-..+|++..+++++.+|+..|+|||+ |++.+|.
T Consensus 268 PeE~~LPg-------~~s~q------gpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~-------PLAanQL 327 (432)
T KOG0138|consen 268 PEENLLPG-------ASSLQ------GPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGR-------PLAANQL 327 (432)
T ss_pred ChhhcCCC-------ccccC------CchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCC-------chhHHHH
Confidence 99999953 12222 2356788899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 009460 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (534)
Q Consensus 330 ~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (534)
+|.+|++|+.++.+.-.+++++..++|+. ......+|..|.+.+-.++++++.++++.||.|.+.++-
T Consensus 328 ~Q~Kladmltei~lgl~~clrl~rLkd~g------------~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyh 395 (432)
T KOG0138|consen 328 IQKKLADMLTEITLGLQACLRLGRLKDQG------------KATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYH 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc------------cCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHH
Confidence 99999999999999999999998877632 112335789999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 410 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+-+.+-+.....||||+-+++...++|.+-+
T Consensus 396 v~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 396 VIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred HHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 9999999999999999999999999998754
No 30
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=9.2e-48 Score=404.68 Aligned_cols=359 Identities=26% Similarity=0.342 Sum_probs=295.4
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhc----------
Q 009460 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (534)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~---------- 93 (534)
+++.++++.+++|+.++.. +... ...+.. . ......++|+.+.+.|| |+++||.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~--~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 7 EEQEALRAEVREFAEEELA-PEAA--EIDRRI-E--DERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred HHHHHHHHHHHHHHHHhcC-cchh--hhhhhc-c--cccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 5678899999999987653 1100 001100 0 01112467888888886 788887543321
Q ss_pred --CCc--chhhhhhh---chHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCc-eEEEEeCCCCeEEEe
Q 009460 94 --DEP--AFTDLHWG---MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLE-TTATFDPQTDEFVIH 165 (534)
Q Consensus 94 --~~~--~~~~~~~~---l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~-ttA~~d~~~~~~vLn 165 (534)
+.+ ..+.++.. .....+..+|+++|+++|||++.+|+.++|+++|||++|||+.++. |+++.+ +++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~--~g~~~ln 158 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRD--DGDYVLN 158 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEec--CCCEEEE
Confidence 111 11222221 3344677899999999999999999999999999999999999998 666664 3449999
Q ss_pred cCCCCccccccCCCCCCccEEEEEEEeccC-CCCCceEEEEEEeccCCCCCC-CCCeEEeeCCCccCcccCCCCCcceee
Q 009460 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSP-LPGITIGDIGMKFGNGAYNTMDNGVLR 243 (534)
Q Consensus 166 tp~~~G~K~~v~~la~~A~~~lV~Ar~~~~-~~~~G~~~flV~ir~~~~~~~-~pGv~i~~~~~k~G~~~~~~~~~~~v~ 243 (534)
|+|+|||| +..||+++|+|+++.+ .+++|+++|+|| .+ .|||++.+++.+.| ++++++++|.
T Consensus 159 -----G~K~~is~-~~~ad~~~v~Ar~~~~~~~~~gis~flV~-------~~~~~Gv~~~~~~~~~G---~r~~~~~~v~ 222 (393)
T COG1960 159 -----GQKIWISN-APVADWLLVLARTDPAPGKHKGISLFLVP-------KDLTPGVSVGPILKKMG---LRGSATGEVF 222 (393)
T ss_pred -----eEEEEEcC-CCCCCEEEEEEEcCCcccccCceEEEEEe-------CCCCCCeeeccccCcCC---cCCCCeeEEE
Confidence 99999999 9999999999999765 466899999999 77 59999999976448 8999999999
Q ss_pred eCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccc
Q 009460 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (534)
Q Consensus 244 fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~ 323 (534)
|+||+||.++++|. .|.++. .....+..+|+.+++.++|.+++|++.+++|+++|+|||+ |
T Consensus 223 f~~v~vp~~~lig~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~ 283 (393)
T COG1960 223 FDDVRVPAENLLGE------EGDGFK------IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGR-------P 283 (393)
T ss_pred ECCeeccHHHcCCc------CCchHH------HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC-------c
Confidence 99999999999983 666665 6778889999999999999999999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 009460 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (534)
Q Consensus 324 i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~G 403 (534)
|++||.+|++|+++.+.+++++++++++++..+.. . .....++++|.++++.+.++++.++|+|||+|
T Consensus 284 i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~-------~-----~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g 351 (393)
T COG1960 284 IADFQLVQFKLADMAAELEAARLLVLRAAELADAG-------D-----DAGAEAAMAKLFATEAALEVADEAVQVHGGYG 351 (393)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999977766421 1 12267899999999999999999999999999
Q ss_pred ccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHH
Q 009460 404 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (534)
Q Consensus 404 y~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 442 (534)
|+.+++++++|||++...+++|++++++..+++.+++..
T Consensus 352 ~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 352 YTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred cccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999998764
No 31
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=1.1e-46 Score=428.48 Aligned_cols=367 Identities=16% Similarity=0.205 Sum_probs=293.3
Q ss_pred HcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHH-HHHH-HHHHHHHH-HcCC-----CHH------------
Q 009460 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNT-LRKA-AYAWKRII-ELRL-----SEE------------ 84 (534)
Q Consensus 25 ~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~-~~g~-----~~~------------ 84 (534)
+.-++|+.++++++++|++++.. +... .+.+...-... .... .+.|+.+. ++|| |++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~-p~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~ 476 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIY-PMEN--EFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFED 476 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcc-CccH--HHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhccccc
Confidence 34467899999999999987622 1100 00000000000 0011 24666664 8998 453
Q ss_pred ------------HHHHHhhhcCC---------c---ch-hh--hhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEec
Q 009460 85 ------------EASMLRSSVDE---------P---AF-TD--LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQ 137 (534)
Q Consensus 85 ------------~gg~~~~~~~~---------~---~~-~~--~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~ 137 (534)
+||.+.++.+. . .+ +. .+..+...+|..+|+++||++||+++++|++++|+++
T Consensus 477 ~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~ 556 (822)
T PLN02876 477 NKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAM 556 (822)
T ss_pred ccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEe
Confidence 57766543221 1 11 11 1111334578899999999999999999999999999
Q ss_pred CCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCC--CCccEEEEEEEeccCC-CCCceEEEEEEeccCCC
Q 009460 138 TELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG--KVSTHAVVYARLITDG-QDHGVNGFIVQLRSLED 213 (534)
Q Consensus 138 tE~~-~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la--~~A~~~lV~Ar~~~~~-~~~G~~~flV~ir~~~~ 213 (534)
|||+ +|||+.++.|+|+.+ +++|+|| |+|+||++ + ..||+++|+|++..++ ++.++.+|+||
T Consensus 557 tEp~~~gsd~~~~~t~a~~~--g~g~vLn-----G~K~~vtg-a~~~~ad~~lv~ar~~~~~~~~~~~s~flV~------ 622 (822)
T PLN02876 557 TEPQVASSDATNIECSIRRQ--GDSYVIN-----GTKWWTSG-AMDPRCRVLIVMGKTDFNAPKHKQQSMILVD------ 622 (822)
T ss_pred cCCCccCcccccceEEEEEc--CCEEEEE-----eEEEEecC-CCCCCCCEEEEEEecCCCCCCCCcceEEEEe------
Confidence 9997 689999999999988 7899999 99999998 6 4799999999975432 33578899999
Q ss_pred CCCCCCeEEeeCCCccCcccCCCC--CcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHH
Q 009460 214 HSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 291 (534)
Q Consensus 214 ~~~~pGv~i~~~~~k~G~~~~~~~--~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~ 291 (534)
.+.|||++.+.+.++| +++. .++.|.||||+||.+++|+. .|.++. .+...+..+|+.+++.
T Consensus 623 -~~~pGv~i~~~~~~~G---~r~~~~~~~~v~fd~V~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~ 686 (822)
T PLN02876 623 -IQTPGVQIKRPLLVFG---FDDAPHGHAEISFENVRVPAKNILLG------EGRGFE------IAQGRLGPGRLHHCMR 686 (822)
T ss_pred -CCCCCceeecccceec---cCCCCCCeeEEEEcceeechhheecC------CCchHH------HHHHHHhhhHHHHHHH
Confidence 7789999999999999 8874 57899999999999999974 454443 5566778899999999
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCch
Q 009460 292 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 371 (534)
Q Consensus 292 ~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (534)
++|++++|++.+++|+++|+|||+ ||++||.+|++|++|.+.+++++++++.+++.+++. +. .
T Consensus 687 ~vG~a~~ale~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~------~~----~ 749 (822)
T PLN02876 687 LIGAAERGMQLMVQRALSRKAFGK-------LIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRL------GN----K 749 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCC-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------CC----c
Confidence 999999999999999999999999 999999999999999999999999999998776521 10 1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 372 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 372 ~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
+....++++|+++++.+.+++++|+|+|||+||+++++++++|||++...+++|++++++..+++.+|+.
T Consensus 750 ~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 750 KARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 2345688999999999999999999999999999999999999999999999999999999999999875
No 32
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=383.73 Aligned_cols=324 Identities=25% Similarity=0.317 Sum_probs=287.6
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHhhhc------------CCcc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhccc
Q 009460 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (534)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~------------~~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~ 130 (534)
...|+.+.++|+ |++++|.+...- +..+ .+..|.++....|..+||++||++|||++++|+
T Consensus 112 ~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~ 191 (634)
T KOG0137|consen 112 ETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGK 191 (634)
T ss_pred hhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCC
Confidence 345667777765 677777664321 2222 234465567778999999999999999999999
Q ss_pred ceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCC----CCCceEEEEE
Q 009460 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFIV 206 (534)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~----~~~G~~~flV 206 (534)
.+++||+|||..|||+.++.|+|+..++++.|+|| |.|.||+| +..||+++|||++..++ ..+++++|||
T Consensus 192 ~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn-~g~Adif~VfAqt~~~~~~g~~k~k~T~Flv 265 (634)
T KOG0137|consen 192 LIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISN-GGLADIFTVFAQTEVDPADGEVKRKITAFLV 265 (634)
T ss_pred ccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEec-CccceeeeeeeccccCCCCccccCceEEEEE
Confidence 99999999999999999999999999999999999 99999999 99999999999997543 2368999999
Q ss_pred EeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHH
Q 009460 207 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 286 (534)
Q Consensus 207 ~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~ 286 (534)
+ ++..||+-++...|+| .++++.++|.|++|.||.+|+||. +|.++. +....++.+|+
T Consensus 266 e-------r~~~Gvt~G~~e~k~G---iKgsnt~~v~f~~~ki~~envlG~------~G~G~k------va~nilnsgR~ 323 (634)
T KOG0137|consen 266 E-------RDFGGVTNGPPEKKMG---IKGSNTAEVHFEGVKIPIENVLGK------PGDGFK------VAMNILNSGRF 323 (634)
T ss_pred e-------ccccCccCCCchhhhc---ccccceeeeeeccccccHHHhcCC------CCcchH------HHHHHHccCCc
Confidence 9 7789999999999999 999999999999999999999995 788887 77888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009460 287 TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 366 (534)
Q Consensus 287 ~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (534)
.+++..+|.+++++..+.+|+..|.|||. ++.+|..+|.+++.|...+|+++++.|..+..+|+
T Consensus 324 ~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~-------~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~--------- 387 (634)
T KOG0137|consen 324 GMAAALLGLMKRIIEEAADYATNRTQFGK-------KLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDE--------- 387 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcceecCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc---------
Confidence 99999999999999999999999999999 99999999999999999999999999987766542
Q ss_pred CCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHH
Q 009460 367 FSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 438 (534)
Q Consensus 367 ~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 438 (534)
....+.+..+++.|.++++.+..++++++|++||+||+.+.++++.+||++.++|+||+|++++.-||..-
T Consensus 388 -~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg 458 (634)
T KOG0137|consen 388 -VGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTG 458 (634)
T ss_pred -ccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHH
Confidence 12356788899999999999999999999999999999999999999999999999999999999988644
No 33
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.1e-45 Score=379.06 Aligned_cols=326 Identities=27% Similarity=0.363 Sum_probs=281.9
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhhcCCcchhhhhhhchHH
Q 009460 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVP 108 (534)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~gg~~~~~~~~~~~~~~~~~l~~~ 108 (534)
+++.++++.+++++.++...... . ........|+.+.++||. ++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~g~~----------------------~~~~ 46 (327)
T cd00567 1 EEQRELRDSAREFAAEELEPYAR--------E----RRETPEEPWELLAELGLL----------------------LGAA 46 (327)
T ss_pred ChHHHHHHHHHHHHHHhccccHH--------h----HHhhCCCCHHHHHHHHHH----------------------hchH
Confidence 36788999999999875432110 0 011234568888888875 5667
Q ss_pred HHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEE
Q 009460 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV 188 (534)
Q Consensus 109 ~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV 188 (534)
+|..+|+++|+++||+.+.+|++++|+++|||++|||+..+.|+++++ +++|+|| |+|+|+++ +..||+++|
T Consensus 47 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~ad~~lv 118 (327)
T cd00567 47 LLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKD--GDGYVLN-----GRKIFISN-GGDADLFIV 118 (327)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEEEecC-CccCCEEEE
Confidence 888899999999999999999999999999999999999999999988 7899999 99999999 899999999
Q ss_pred EEEeccCC-CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCce
Q 009460 189 YARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKY 267 (534)
Q Consensus 189 ~Ar~~~~~-~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~ 267 (534)
+|++..++ +..++.+|+|| .+.|||++.+.|.++| +++++++.|.|+||+||.+++|+. .+.+
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp-------~~~~Gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~l~~------~~~g 182 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVP-------ADTPGVTVGRIWDKMG---MRGSGTGELVFDDVRVPEDNLLGE------EGGG 182 (327)
T ss_pred EEEeCCCCCCCCceEEEEEe-------CCCCCeEecccccccc---CCCCceEEEEECCEEecHHHcCCC------CCch
Confidence 99986533 34578899999 7789999999999999 999999999999999999999984 3433
Q ss_pred eccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Q 009460 268 VQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFV 347 (534)
Q Consensus 268 ~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~ 347 (534)
+. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||.+|++|+++.+.+++++.+
T Consensus 183 ~~------~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~-------~~~~~~~vq~~la~~~~~~~~~~~~ 249 (327)
T cd00567 183 FE------LAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK-------PLAEFQAVQFKLADMAAELEAARLL 249 (327)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------ccccchHHHHHHHHHHHHHHHHHHH
Confidence 32 4556777899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccH
Q 009460 348 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~ 427 (534)
++.+++.+++ .. .+....++++|+++++.+.++++.|+++|||+||+++++++++|||+....+++|++
T Consensus 250 ~~~a~~~~~~-------~~----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~ 318 (327)
T cd00567 250 LYRAAWLLDQ-------GP----DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTA 318 (327)
T ss_pred HHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHH
Confidence 9998876652 11 124566789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 009460 428 IVLLLQVAR 436 (534)
Q Consensus 428 ~vl~~~ia~ 436 (534)
++++.++++
T Consensus 319 ~~~~~~~~~ 327 (327)
T cd00567 319 EIQRLIIAR 327 (327)
T ss_pred HHHHHHhcC
Confidence 999988764
No 34
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-46 Score=406.61 Aligned_cols=341 Identities=18% Similarity=0.186 Sum_probs=276.6
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHhhhcC---------C-cchhhhh--hh-chHHHHhcCCCHHHHHHHHHHHhcccc
Q 009460 70 AYAWKRIIELRL-----SEEEASMLRSSVD---------E-PAFTDLH--WG-MFVPAIKGQGTDEQHQKWLPLAYKMEI 131 (534)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~~---------~-~~~~~~~--~~-l~~~~i~~~Gt~eq~~~~L~~l~~g~~ 131 (534)
.++|+.+.+.|| |+++||.+.+... . ..++.++ .. ....+|..+||++||++|||++.+|++
T Consensus 102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~ 181 (622)
T PTZ00456 102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEW 181 (622)
T ss_pred HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCh
Confidence 358999999999 6788887654321 0 1122111 11 234578899999999999999999999
Q ss_pred eeeEecCCCCCCCCCCCCceEEEEeCCCC-eEEEecCCCCccccccCCCCCCc----cEEEEEEEeccC-CCCCceEEEE
Q 009460 132 IGCYAQTELGHGSNVQGLETTATFDPQTD-EFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITD-GQDHGVNGFI 205 (534)
Q Consensus 132 ~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~-~~vLntp~~~G~K~~v~~la~~A----~~~lV~Ar~~~~-~~~~G~~~fl 205 (534)
++|+++|||++|||+..++|+|+++ +| +|+|| |+|+||++ +.++ ++.+|+||+..+ .+..|+++||
T Consensus 182 ~~t~alTEp~aGSD~~~l~T~A~~~--gdG~y~L~-----G~K~fIt~-g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFl 253 (622)
T PTZ00456 182 SGTMCLTEPQCGTDLGQVKTKAEPS--ADGSYKIT-----GTKIFISA-GDHDLTENIVHIVLARLPNSLPTTKGLSLFL 253 (622)
T ss_pred hhhhhccCCccCCCcccCeeEEEEC--CCCcEEEe-----eEEEEecC-CchhhccCcEEEEEEEecCCCCCCCceEEEE
Confidence 9999999999999999999999987 44 69999 99999998 7663 577999998653 3457899999
Q ss_pred EEeccCC---CCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHH
Q 009460 206 VQLRSLE---DHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMV 282 (534)
Q Consensus 206 V~ir~~~---~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~ 282 (534)
||...++ +....+||++..+.+|+| +++++++.|.||| |.+++||. .+.++. .+...|+
T Consensus 254 Vp~~~~~~~G~~~~~~gv~~~~~~~kmG---~~gs~t~~l~fd~---~~~~llG~------~~~Gl~------~~~~~mn 315 (622)
T PTZ00456 254 VPRHVVKPDGSLETAKNVKCIGLEKKMG---IKGSSTCQLSFEN---SVGYLIGE------PNAGMK------QMFTFMN 315 (622)
T ss_pred EeCCCCCcCCCccCCCCeeecCcccccC---CCCCceEEEEeeC---hhHhhcCC------CChHHH------HHHHHHH
Confidence 9954321 112347899999999999 9999999999999 46889984 555555 6777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC-----CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009460 283 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG-----GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTD 357 (534)
Q Consensus 283 ~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~-----~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~ 357 (534)
.+|+.+++.++|+++++++.+++|+++|+||+...+ ....||+++|.+|++|++|.+.++++|.++++++..++.
T Consensus 316 ~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~ 395 (622)
T PTZ00456 316 TARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDI 395 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854321 134599999999999999999999999999999887764
Q ss_pred HHHHhccCCCCC----chhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHH-H
Q 009460 358 VTQRLQANDFST----LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL-L 432 (534)
Q Consensus 358 ~~~~~~~~~~~~----~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~-~ 432 (534)
.... .+... .......++++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|+|+++. .
T Consensus 396 ~~~~---~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~d 472 (622)
T PTZ00456 396 HAAA---KDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALD 472 (622)
T ss_pred cccc---cchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHH
Confidence 2100 00000 01234578899999999999999999999999999999999999999999999999999997 5
Q ss_pred HHHHHHH
Q 009460 433 QVARFLM 439 (534)
Q Consensus 433 ~ia~~ll 439 (534)
.|+|.++
T Consensus 473 li~rkll 479 (622)
T PTZ00456 473 FIGRKVL 479 (622)
T ss_pred HHHHHhh
Confidence 8888887
No 35
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.3e-45 Score=390.52 Aligned_cols=302 Identities=22% Similarity=0.245 Sum_probs=258.6
Q ss_pred chhhhhhhchHHHHhcCCCHHHHHHHHHHHhccc----ceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCcc
Q 009460 97 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME----IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172 (534)
Q Consensus 97 ~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~----~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~ 172 (534)
.|+.+|. +++.+|..+|+++|+ +|||++.+|+ +++|+++|||++|||+.+++|+|+++. +|+|+|| |+
T Consensus 111 ~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G~ 182 (418)
T cd01154 111 CPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----GH 182 (418)
T ss_pred CcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----EE
Confidence 4444443 577899999998865 6999999997 899999999999999999999999874 5789999 99
Q ss_pred ccccCCCCCCccEEEEEEEeccC-CCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCc
Q 009460 173 KWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPR 251 (534)
Q Consensus 173 K~~v~~la~~A~~~lV~Ar~~~~-~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~ 251 (534)
|+|+++ + .||+++|+||++.+ +++.|+++|+||.+.++ ...|||+|.++++++| ++++++++|.|+|| +
T Consensus 183 K~f~s~-a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~--~~~~Gv~i~~~~~~~G---~r~~~~~ev~f~dv---~ 252 (418)
T cd01154 183 KWFASA-P-LADAALVLARPEGAPAGARGLSLFLVPRLLED--GTRNGYRIRRLKDKLG---TRSVATGEVEFDDA---E 252 (418)
T ss_pred EEEecC-c-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCC--CCCCCeEecccccccC---CCCCCeEEEEecCc---C
Confidence 999999 7 99999999998753 34579999999954322 1236999999999999 99999999999998 3
Q ss_pred cccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHH
Q 009460 252 NQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 331 (534)
Q Consensus 252 ~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q 331 (534)
+++||. .|.++. .+...+...|+.+++.++|.++++++.+++|+++|+|||+ ||+++|.+|
T Consensus 253 ~~~lG~------~g~G~~------~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~l~~~~~v~ 313 (418)
T cd01154 253 AYLIGD------EGKGIY------YILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGK-------PLIDHPLMR 313 (418)
T ss_pred ccccCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC-------chhhhHHHH
Confidence 788884 566665 5667889999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChh
Q 009460 332 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 411 (534)
Q Consensus 332 ~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~ 411 (534)
++|+++.+.+++++++++++++.++... .+...........++++|+++++.+.+++++|+|+|||.||+.+++++
T Consensus 314 ~~La~~~~~~eaar~l~~~aa~~~~~~~----~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~ 389 (418)
T cd01154 314 RDLAEMEVDVEAATALTFRAARAFDRAA----ADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVA 389 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHH
Confidence 9999999999999999999987765310 000000001234578899999999999999999999999999999999
Q ss_pred HHhhhhcccccccccHHHHHHHHHHHHH
Q 009460 412 ELFAVYVPACTYEGDNIVLLLQVARFLM 439 (534)
Q Consensus 412 ~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (534)
++|||++...+++|++++++..+.|.|-
T Consensus 390 r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 390 RLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999874
No 36
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=4.1e-46 Score=390.35 Aligned_cols=353 Identities=19% Similarity=0.186 Sum_probs=281.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhc----------
Q 009460 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (534)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~---------- 93 (534)
+||.++++.+++|+.++...... ..... + ..........+|+.|.+.|| |+++||.+.+..
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~ 76 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELR-EESAL--G-YREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMA 76 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCcccc-ccccc--c-ccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHH
Confidence 46789999999999887442211 10000 0 00011123466788999887 688888665432
Q ss_pred --CCcchhh-hhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 009460 94 --DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (534)
Q Consensus 94 --~~~~~~~-~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~ 170 (534)
+.+.++. .+..++...|..+|+++|+++||+++.+|+.++++++|||++|||+..+.|+|+.+ +++|+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~----- 149 (380)
T cd01152 77 AAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVN----- 149 (380)
T ss_pred hcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEe-----
Confidence 2233332 22234566789999999999999999999999999999999999999999999987 7899999
Q ss_pred ccccccCCCCCCccEEEEEEEeccCC-CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcccc
Q 009460 171 SSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (534)
Q Consensus 171 G~K~~v~~la~~A~~~lV~Ar~~~~~-~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (534)
|+|+||++ +..||+++|+|++..++ +..++.+|+|| ...|||++.+.+.++| +.+++.|.|+||+|
T Consensus 150 G~K~~it~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~g-----~~~~~~l~f~~v~V 216 (380)
T cd01152 150 GQKIWTSG-AHYADWAWLLVRTDPEAPKHRGISILLVD-------MDSPGVTVRPIRSING-----GEFFNEVFLDDVRV 216 (380)
T ss_pred cEEEEEcC-ccccCEEEEEEEeCCCccCcCCeEEEEEe-------CCCCceEeeehhhccC-----CCCcceEEecCcCc
Confidence 99999999 89999999999976433 23578999999 7789999999988776 56789999999999
Q ss_pred CccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHH
Q 009460 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (534)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (534)
|.+++|+. .|.++. .+...+...|+.+++. +..+++.+++|+++|.|||+ ||.+||.
T Consensus 217 p~~~~lg~------~~~g~~------~~~~~l~~~r~~~~~~----~~~~~~~a~~~a~~r~~~g~-------~l~~~~~ 273 (380)
T cd01152 217 PDANRVGE------VNDGWK------VAMTTLNFERVSIGGS----AATFFELLLARLLLLTRDGR-------PLIDDPL 273 (380)
T ss_pred chhcccCC------CCchHH------HHHHHHHhcccccchh----hhHHHHHHHHHHHHHHhcCC-------CcccCHH
Confidence 99999984 455443 4445566677665544 44455677789999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc--
Q 009460 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS-- 407 (534)
Q Consensus 330 ~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~-- 407 (534)
+|++|++|.+.+++++.+++.+++.+++ +. .....++++|+++++.+.++++.|+|++||.||+.+
T Consensus 274 vq~~la~~~~~l~~a~~l~~~aa~~~~~-------~~-----~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~ 341 (380)
T cd01152 274 VRQRLARLEAEAEALRLLVFRLASALAA-------GK-----PPGAEASIAKLFGSELAQELAELALELLGTAALLRDPA 341 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC-----CCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 9999999999999999999999887752 11 122347899999999999999999999999999988
Q ss_pred ------CChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 408 ------SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 408 ------~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++++||++...+++|++++++..+++.+++
T Consensus 342 ~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 342 PGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred cccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999998763
No 37
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=9.5e-45 Score=383.19 Aligned_cols=340 Identities=19% Similarity=0.206 Sum_probs=268.3
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHhhhcC------------CcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccce
Q 009460 70 AYAWKRIIELRL-----SEEEASMLRSSVD------------EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (534)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~~------------~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~ 132 (534)
.++|+.|.+.|| |+++||.+.++.. .+.++..........|..+|+++|+++|+|++.+|+.+
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~ 118 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWT 118 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCee
Confidence 467999999987 6788876654321 12222121223445678889999999999999999999
Q ss_pred eeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCc----cEEEEEEEeccCC-CCCceEEEEEE
Q 009460 133 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITDG-QDHGVNGFIVQ 207 (534)
Q Consensus 133 ~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A----~~~lV~Ar~~~~~-~~~G~~~flV~ 207 (534)
+|+++|||++|||+..++|+|++++ +++|+|| |+|+|+++ +.+| ++++|+|++..++ +..++++|+||
T Consensus 119 ~~~a~tEp~~gsd~~~~~t~a~~~~-~ggy~l~-----G~K~~is~-~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp 191 (407)
T cd01153 119 GTMCLTEPDAGSDLGALRTKAVYQA-DGSWRIN-----GVKRFISA-GEHDMSENIVHLVLARSEGAPPGVKGLSLFLVP 191 (407)
T ss_pred EEEEecCCCCCCCcccceEEEEECC-CCcEEEe-----eEEEEEeC-CCcccccccEEEEEEeCCCCCCCCCceEEEEEe
Confidence 9999999999999999999999873 3579999 99999998 7776 5788999975422 33578999999
Q ss_pred eccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHH
Q 009460 208 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 287 (534)
Q Consensus 208 ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~ 287 (534)
.+.++ ...|||++.+.|.++| +++++++.|.|+||+|| +|+. +|.++. .....+...|+.
T Consensus 192 ~~~~~--~~~~gv~i~~~~~~~G---~r~t~s~~v~f~~v~Vp---~lg~------~~~g~~------~~~~~l~~~r~~ 251 (407)
T cd01153 192 KFLDD--GERNGVTVARIEEKMG---LHGSPTCELVFDNAKGE---LIGE------EGMGLA------QMFAMMNGARLG 251 (407)
T ss_pred ccCcC--CCCCCeEeccchhccC---CCCCCeEEEEEcCEEEe---eeCC------CCccHH------HHHHHHHHHHHH
Confidence 33211 0138999999999999 99999999999999999 7764 455443 556778889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCCCC-CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009460 288 IVADASCALSRAVCIATRYSAVRRQFGSKNGG-PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 366 (534)
Q Consensus 288 ~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~-~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (534)
+++.++|+++++++.+++|+++|+|||++... +..++.++|.+|++|+++.+.+++++.+++++++.+++........+
T Consensus 252 ~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~ 331 (407)
T cd01153 252 VGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGE 331 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhh
Confidence 99999999999999999999999999983211 22238999999999999999999999999999887763210000000
Q ss_pred CCC--chhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHH-HHHH
Q 009460 367 FST--LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLL-QVAR 436 (534)
Q Consensus 367 ~~~--~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~-~ia~ 436 (534)
... .......++++|+++++.+.++++.++++|||+||+++++++++|||++...+++|++++++. .+++
T Consensus 332 ~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~ 404 (407)
T cd01153 332 DRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR 404 (407)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhc
Confidence 000 001245578999999999999999999999999999999999999999999999999998886 4443
No 38
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-44 Score=388.15 Aligned_cols=286 Identities=21% Similarity=0.214 Sum_probs=252.3
Q ss_pred chHHHHhcCCCHHHHHHHHHHHhccc-------------ceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCc
Q 009460 105 MFVPAIKGQGTDEQHQKWLPLAYKME-------------IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 171 (534)
Q Consensus 105 l~~~~i~~~Gt~eq~~~~L~~l~~g~-------------~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G 171 (534)
.....+...|+++|+++|||++.+|+ .++++++|||++|||+..++|+|+++. +|+|+|| |
T Consensus 139 ~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln-----G 212 (538)
T PRK11561 139 FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV-----G 212 (538)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-----E
Confidence 45556677789999999999999997 567999999999999999999999842 6789999 9
Q ss_pred cccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCC-----CeEEeeCCCccCcccCCCCCcceeeeCc
Q 009460 172 SKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLP-----GITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (534)
Q Consensus 172 ~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~p-----Gv~i~~~~~k~G~~~~~~~~~~~v~fd~ 246 (534)
+|||+++ ..||+++|+||+. .|+++|+|| +..| ||+|...++|+| +++.++++|.|+|
T Consensus 213 ~K~fiSa--~~AD~~lVlArt~-----~Gls~FlVp-------~~~p~g~~nGv~i~rl~~klG---~r~~~t~ev~f~d 275 (538)
T PRK11561 213 HKWFFSV--PQSDAHLVLAQAK-----GGLSCFFVP-------RFLPDGQRNAIRLERLKDKLG---NRSNASSEVEFQD 275 (538)
T ss_pred EEEEEEc--hhhCEEEEEEEEC-----CceEEEEEE-------CCCCCCCCCceEEeccccccc---CCCCceeEEEECC
Confidence 9999994 6799999999984 479999999 4455 899999999999 9999999999999
Q ss_pred cccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccc
Q 009460 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (534)
Q Consensus 247 vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~ 326 (534)
| .+++||. .|.++. .+...+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 276 v---~~~llG~------~g~G~~------~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~-------~L~~ 333 (538)
T PRK11561 276 A---IGWLLGE------EGEGIR------LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGK-------PLIE 333 (538)
T ss_pred H---HHHHCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------cccc
Confidence 9 4889984 677665 6777889999999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 009460 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (534)
Q Consensus 327 ~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~ 406 (534)
||.+|++|++|.+.+++++++++++++.+++. .+..........++++|+++++.+.+++++|+|+|||+||++
T Consensus 334 ~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~------~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~e 407 (538)
T PRK11561 334 QPLMRQVLSRMALQLEGQTALLFRLARAWDRR------ADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCE 407 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 99999999999999999999999999888631 010000113456788999999999999999999999999999
Q ss_pred cCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 407 ~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
+++++++|||++.+.++||++++++..++|.+.+.
T Consensus 408 e~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~~ 442 (538)
T PRK11561 408 ESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442 (538)
T ss_pred CcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998763
No 39
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=7.9e-42 Score=357.65 Aligned_cols=328 Identities=18% Similarity=0.092 Sum_probs=260.2
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHhhhcC------------Ccchh--hhhhhchHHHHhcCCCHHHHHHHHHHHhccc
Q 009460 70 AYAWKRIIELRL-----SEEEASMLRSSVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (534)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~ 130 (534)
.+.|+.+.+.|| |+++||.+.++.+ .+.++ .+|. .....|..+|+++|+++|++++.+|+
T Consensus 25 ~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~ 103 (377)
T cd01163 25 YEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGW 103 (377)
T ss_pred HHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCC
Confidence 467889999888 6888887655421 13332 3443 33467888999999999999999999
Q ss_pred ceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEecc
Q 009460 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRS 210 (534)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~ 210 (534)
+++ .++|||++|+ +..+.|+++.+ +++|+|| |+|.||++ +..||+++|+|++.. .++.+|+||
T Consensus 104 ~~~-~a~tE~~~~~-~~~~~~~~~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~----~~~~~~lV~--- 166 (377)
T cd01163 104 IFG-NAVSERGSVR-PGTFLTATVRD--GGGYVLN-----GKKFYSTG-ALFSDWVTVSALDEE----GKLVFAAVP--- 166 (377)
T ss_pred eEE-EeecCCCCCC-CCCceEEEEec--CCEEEEe-----ceEEeecC-CccceEEEEEEEcCC----CcEEEEEEe---
Confidence 765 5999999886 66777777766 7899999 99999999 899999999998642 346789999
Q ss_pred CCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHH
Q 009460 211 LEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290 (534)
Q Consensus 211 ~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa 290 (534)
.+.|||++.+.|.++| +++++++.|.||||+||.+++|+. .+.++. ....+...|+.+++
T Consensus 167 ----~~~~Gv~i~~~~~~~G---~~~~~s~~v~f~~v~Vp~~~~lg~------~~~g~~-------~~~~~~~~~l~~aa 226 (377)
T cd01163 167 ----TDRPGITVVDDWDGFG---QRLTASGTVTFDNVRVEPDEVLPR------PNAPDR-------GTLLTAIYQLVLAA 226 (377)
T ss_pred ----CCCCceeecCCccccc---CccCCcceEEEeeEEECHHHccCC------Cccccc-------cccccHHHHHHHHH
Confidence 7889999999999999 999999999999999999999985 333332 01123456788999
Q ss_pred HHHHHHHHHHHHHHHhhcccc-ccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 009460 291 DASCALSRAVCIATRYSAVRR-QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 369 (534)
Q Consensus 291 ~~~g~~~~al~~av~Ya~~R~-qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (534)
.++|+++++++.+++|+++|+ +||++... ++.++|.+|++|++|.+.+++++++++.+++.+++........+...
T Consensus 227 ~~lG~a~~al~~~~~~~~~R~~~~g~~~~~---~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~ 303 (377)
T cd01163 227 VLAGIARAALDDAVAYVRSRTRPWIHSGAE---SARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEA 303 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCCcc---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 999999999999999999995 88873211 58899999999999999999999999999988875321100000001
Q ss_pred chhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHH
Q 009460 370 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (534)
Q Consensus 370 ~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (534)
..+....++++|+++++.+.++++.|+|+|||+||+++++++++|||++...++... ......++.+++
T Consensus 304 ~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~-~~~~~~~~~~~~ 372 (377)
T cd01163 304 RGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPV-IYKERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHH-HHHHHHhchhhc
Confidence 123456688999999999999999999999999999999999999999998766665 445555665554
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-36 Score=321.49 Aligned_cols=279 Identities=16% Similarity=0.117 Sum_probs=233.6
Q ss_pred HHHHHHHHc-CC-----CHHHHHHHhhhcC------------Ccchh--hhhhhchHHHHhcCCCHHHHHHHHHHHhccc
Q 009460 71 YAWKRIIEL-RL-----SEEEASMLRSSVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (534)
Q Consensus 71 ~~~~~l~~~-g~-----~~~~gg~~~~~~~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~ 130 (534)
.+.+.+.++ || |+++||.+.+..+ .+.++ ..|..+....|..+||++||++|||++++|+
T Consensus 54 ~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe 133 (520)
T PTZ00457 54 QIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT 133 (520)
T ss_pred HHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 344456677 66 7899988765422 12222 2354466678888999999999999999999
Q ss_pred ceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEecc----C-C--CCCceEE
Q 009460 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT----D-G--QDHGVNG 203 (534)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~----~-~--~~~G~~~ 203 (534)
.++++|+|| +.|||+.++.|+|+++. +|+|+|| |+|.|+ + |..||+++|+|++.. + + +..|+++
T Consensus 134 ~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~-g~~Ad~~lV~Art~~~~~~~~g~~~~~git~ 204 (520)
T PTZ00457 134 IMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-F-AASATHFLVLAKTLTQTAAEEGATEVSRNSF 204 (520)
T ss_pred cEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-c-CchhcEEEEEeecCCcccccccccCcCceEE
Confidence 999999999 99999999999999863 4579999 999977 6 889999999999853 1 1 1357999
Q ss_pred EEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHH
Q 009460 204 FIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283 (534)
Q Consensus 204 flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~ 283 (534)
|+|| .+.|||++++ ++|.|||| |.+++||. .|.+++ .....+..
T Consensus 205 FlV~-------~dapGVtv~~---------------~eV~FddV--P~~~vLG~------~g~G~~------~a~~~L~~ 248 (520)
T PTZ00457 205 FICA-------KDAKGVSVNG---------------DSVVFENT--PAADVVGV------VGEGFK------DAMITLFT 248 (520)
T ss_pred EEEE-------CCCCceEEec---------------CEEEECCC--CHHHhCCC------CCchHH------HHHHHHHH
Confidence 9999 8899999862 47999997 99999984 566665 66678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009460 284 VRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 363 (534)
Q Consensus 284 ~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 363 (534)
+|+.+++.++|+++++++.+++|++ +|.+||+|++|.+.+++++++++.+++.+|+
T Consensus 249 ~Rl~~aA~~vGia~~ale~av~ya~------------------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~------ 304 (520)
T PTZ00457 249 EQYLYAASLLGIMKRVVQELRGSNA------------------EEGATDTVASFACAMYAMESTLYALTANLDL------ 304 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 9999999999999999999999984 4799999999999999999999999998862
Q ss_pred cCCCCCchhhHHHHHhHHHHHH---HHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHH
Q 009460 364 ANDFSTLPEAHACTAGLKSLTT---TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL 431 (534)
Q Consensus 364 ~~~~~~~~~~~~~~s~aK~~~t---~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~ 431 (534)
...+.+..++++|+|++ +.+..++++++| .++++++++||++.+.++||+|++|+
T Consensus 305 -----g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 305 -----PTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred -----CCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 11356788999999999 888888888877 79999999999999999999999999
No 41
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=3.1e-37 Score=322.14 Aligned_cols=327 Identities=13% Similarity=0.026 Sum_probs=251.2
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHhhhc------------CCcchhh-hhhhchHHHHhcCCCHHHHHHHHHHHhcccc
Q 009460 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI 131 (534)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~------------~~~~~~~-~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~ 131 (534)
.++|+.+.+.|| |+++||.+.++. +.+.++. ....+....+..+++++|++.|++.. .+.+
T Consensus 25 ~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 103 (370)
T cd01159 25 DEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGDGP-DTLL 103 (370)
T ss_pred HHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhCCHHHHHHHhCCCC-CceE
Confidence 457888888887 688888765532 1222221 11235556777889999998887632 1111
Q ss_pred eeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccC
Q 009460 132 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSL 211 (534)
Q Consensus 132 ~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~ 211 (534)
.+ ...+.|+|+++ +|+|+|| |+|.||++ +..||+++|+|++..+++..++.+|+||
T Consensus 104 ~g------------~~~~~t~A~~~--~~gy~ln-----G~K~~it~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~---- 159 (370)
T cd01159 104 AG------------SYAPGGRAERV--DGGYRVS-----GTWPFASG-CDHADWILVGAIVEDDDGGPLPRAFVVP---- 159 (370)
T ss_pred Ee------------eecCCceeEEe--CCeEEEe-----ccccCccC-CCcCceeEeeeECCCCCCCCcceEEEEE----
Confidence 11 12456789887 7899999 99999999 8999999999997543345679999999
Q ss_pred CCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHH
Q 009460 212 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 291 (534)
Q Consensus 212 ~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~ 291 (534)
.+ ||++.+.|.++| +++++++.|.|+||+||.+++|+........+.+...+. .....+.+.|+.+++.
T Consensus 160 ---~~--Gv~~~~~~~~~G---~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~aa~ 228 (370)
T cd01159 160 ---RA--EYEIVDTWHVVG---LRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPV---YRMPLRQVFPLSFAAV 228 (370)
T ss_pred ---hH--HCEEeccccccc---ccccCCCcEEEcceEcCccceecccccccCCCCCCCCcc---ccCchHHHHHHHHHHH
Confidence 44 999999999999 999999999999999999999974110000011110000 1112345678899999
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCch
Q 009460 292 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 371 (534)
Q Consensus 292 ~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (534)
++|+++++++.+++|+++|.||+... .||.+||.+|+++++|.+.+++++.+++.+++.+++.... ++ ....
T Consensus 229 ~lG~a~~~l~~~~~~~~~R~~~~~~g----~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~---~~-~~~~ 300 (370)
T cd01159 229 SLGAAEGALAEFLELAGKRVRQYGAA----VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALA---GG-PIDV 300 (370)
T ss_pred HHHHHHHHHHHHHHHhccCcccCCCc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-CCCH
Confidence 99999999999999999999984210 0899999999999999999999999999999988754211 11 1112
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccH-HHHHHHHHHHHHH
Q 009460 372 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 440 (534)
Q Consensus 372 ~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~-~vl~~~ia~~ll~ 440 (534)
+....++.+|+++++.+.++++.++|+|||.||+.+++++++|||++...+++|++ ++++..++|.+|+
T Consensus 301 ~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 301 EERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 34456788999999999999999999999999999999999999999999999999 9999999998863
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=279.99 Aligned_cols=287 Identities=21% Similarity=0.308 Sum_probs=253.7
Q ss_pred HHhcCCCHHHHHHHHHHHhcccceeeEecCCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCC-CCccEE
Q 009460 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG-KVSTHA 186 (534)
Q Consensus 109 ~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~-~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la-~~A~~~ 186 (534)
.|..+|++|||.+||-++.+|++..|||||||. +.||..++++.-+++ ++.|||| |+|||++|.+ +-|.++
T Consensus 91 vl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~--~~~YvIN-----g~KWw~sga~~PkCrv~ 163 (392)
T KOG1469|consen 91 VLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRD--GDSYVIN-----GKKWWISGAGDPKCRIA 163 (392)
T ss_pred ehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEc--CCEEEEe-----cceeeecCCCCCceEEE
Confidence 578899999999999999999999999999998 568999999999998 8999999 9999999832 458899
Q ss_pred EEEEEeccC--CCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCC--CcceeeeCccccCcccccccccccc
Q 009460 187 VVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVSQVT 262 (534)
Q Consensus 187 lV~Ar~~~~--~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~--~~~~v~fd~vrVP~~~lL~~~~~v~ 262 (534)
+++.+++.. ..+..-++.||| ...|||.|...-..+| +... +..+|.|+|||||..|||-.
T Consensus 164 i~mGkt~~~~~~rhkQqSmiLVp-------M~TpGvkiiRpltVfG---~~DapgGH~Ei~F~~VrVP~~NmlLG----- 228 (392)
T KOG1469|consen 164 IFMGKTDNTSASRHKQQSMILVP-------MNTPGVKIIRPLTVFG---YTDAPGGHFEIHFENVRVPATNMLLG----- 228 (392)
T ss_pred EEecccCCCccchhhcccEEEEe-------cCCCCeeEeeeeeeec---cccCCCCcceEEEEEEEeeccceeec-----
Confidence 999998764 344567899999 7789999988878888 5443 35789999999999999853
Q ss_pred CCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHH
Q 009460 263 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAY 342 (534)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~ 342 (534)
+|.++. +..+-+..+|+..|.-.+|.+++++++..+-+..|..||+ ++..+.++.+-++..-.+++
T Consensus 229 -eGrGFE------IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-------~l~q~~s~~~diA~sRveiE 294 (392)
T KOG1469|consen 229 -EGRGFE------IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-------KLVQHGSVAHDIAESRVEIE 294 (392)
T ss_pred -CCCcce------eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhhcchHHHHHHHHHhHhh
Confidence 677776 5556677899999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhccccc
Q 009460 343 AFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACT 422 (534)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~ 422 (534)
.+|.++..++..+|.. ++ ..+....++.|..+-..+..+++.++|.|||.|.+...++.++|.-++..++
T Consensus 295 qaRLLvLkAAh~mD~~------G~----k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lri 364 (392)
T KOG1469|consen 295 QARLLVLKAAHSMDTL------GN----KGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRI 364 (392)
T ss_pred hhhhhhhhhhhhhhhh------cc----hhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEe
Confidence 9999999999888743 22 3455668899999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHH
Q 009460 423 YEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 423 ~eG~~~vl~~~ia~~ll~~ 441 (534)
..|..++++..+++.-+..
T Consensus 365 adgPd~vhL~ai~~le~~~ 383 (392)
T KOG1469|consen 365 ADGPDEVHLSAIAKLELRD 383 (392)
T ss_pred ccCCCccchhhhhhhhHHH
Confidence 9999999999999876654
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.86 E-value=2.3e-20 Score=198.65 Aligned_cols=248 Identities=8% Similarity=0.063 Sum_probs=187.2
Q ss_pred hcCCCHH--HHHHHHHHHhcccceeeEecCCCCCC-C----CCCCCce--EEEEeCCCCeEEEecCCCCccccccCCCCC
Q 009460 111 KGQGTDE--QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQGLET--TATFDPQTDEFVIHSPTLTSSKWWPGGLGK 181 (534)
Q Consensus 111 ~~~Gt~e--q~~~~L~~l~~g~~~~~~a~tE~~~G-s----d~~~~~t--tA~~d~~~~~~vLntp~~~G~K~~v~~la~ 181 (534)
...|++- --.+|+..+....+..+.++|.|-.- | ....... ..+ +.++++|||| |.|.|+|+ +
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vv-e~~~dGiVV~-----GaK~~~T~-~- 190 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVV-EQTDKGVIVR-----GARMTATF-P- 190 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEE-EEcCCCEEEe-----CHHHhhhh-c-
Confidence 4455543 34689999999999999999988421 1 1111111 222 2337899999 99999999 7
Q ss_pred CccEEEEEEEeccCCCC-Cc--eEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCC-----------CcceeeeCcc
Q 009460 182 VSTHAVVYARLITDGQD-HG--VNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM-----------DNGVLRFEHV 247 (534)
Q Consensus 182 ~A~~~lV~Ar~~~~~~~-~G--~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~-----------~~~~v~fd~v 247 (534)
.||.++|++++...+++ .+ ...|+|| .++|||++.....++| .++. ..+.|.||||
T Consensus 191 ~ad~~~V~~~~~~~~~~~~~~ya~~F~VP-------~dtpGl~~i~r~~~~~---~~~~~D~plssrfde~da~vvFDdV 260 (477)
T TIGR02309 191 IADEILIFPSTVLKAGAEKDPYALAFAIP-------TNTPGLHFVCREALDG---GDSPFDHPLSSRFEEMDALVIFDDV 260 (477)
T ss_pred ccceEEEeccCCCCCccCCCCeEEEEEee-------CCCCceEEEeCCccCC---CCCcccCccccccCCCeEEEEeCce
Confidence 99999999997654332 33 5799999 8999999998888888 6655 5689999999
Q ss_pred ccCcccc--ccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccccc
Q 009460 248 RIPRNQM--LMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (534)
Q Consensus 248 rVP~~~l--L~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~ 325 (534)
+||.+++ +|... --+.++. .++ .++..+..++|.+..+++.++.|+.. .+|+. ++.
T Consensus 261 ~VPwe~VF~~g~~e---~a~~~f~---------~~~--~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~-------gi~ 318 (477)
T TIGR02309 261 LVPWERIFILGDVE---LCNNAYA---------ATG--AVNHMAHQVVALKIAKTEAFLGVAAL-MAEGI-------GAD 318 (477)
T ss_pred eccHHHhhhcCCHH---HHHHHHH---------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-------Ccc
Confidence 9999999 66310 0022221 111 23556788899999999999999999 99999 999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 009460 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (534)
Q Consensus 326 ~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~ 405 (534)
++|.+|++|++|.+.+++++++.+.+++..+. +...........++++|.++++...++. +|+|.+||.|+.
T Consensus 319 ~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~-------~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~ 390 (477)
T TIGR02309 319 GFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKE-------NAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLI 390 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------CCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEE
Confidence 99999999999999999999999988765431 1111111124568999999999999995 999999999998
Q ss_pred c
Q 009460 406 C 406 (534)
Q Consensus 406 ~ 406 (534)
.
T Consensus 391 ~ 391 (477)
T TIGR02309 391 T 391 (477)
T ss_pred e
Confidence 5
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.86 E-value=1.2e-20 Score=170.95 Aligned_cols=145 Identities=27% Similarity=0.222 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009460 276 LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355 (534)
Q Consensus 276 ~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~ 355 (534)
++...+..+|+.+++.++|.++.+++.+++|++.|++||+ |+.++|.++++++++.+.+++++++++++...+
T Consensus 6 ~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~ 78 (150)
T PF00441_consen 6 VALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRRRLADMAARLEAMRALVYRAARRL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHHHHHhhccchhhhhcccccccccc
Confidence 6777899999999999999999999999999999999998 999999999999999999999999999998877
Q ss_pred HHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHH
Q 009460 356 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA 435 (534)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia 435 (534)
++ + ......++++|.++++.+.++++.|+++|||.||+.+++++++++|++.+.+++|++++++.+||
T Consensus 79 ~~--------~----~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia 146 (150)
T PF00441_consen 79 DA--------G----QNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIA 146 (150)
T ss_dssp HT--------T----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHH
T ss_pred cc--------c----cccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHH
Confidence 52 1 11266788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 009460 436 RFLM 439 (534)
Q Consensus 436 ~~ll 439 (534)
+.+|
T Consensus 147 ~~~l 150 (150)
T PF00441_consen 147 RRLL 150 (150)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 45
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=99.64 E-value=1.8e-15 Score=133.15 Aligned_cols=116 Identities=39% Similarity=0.629 Sum_probs=93.8
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCC-CcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHH----HH
Q 009460 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRK-DNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEE----AS 87 (534)
Q Consensus 17 ~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----~~~----gg 87 (534)
|+++|+.+|+|++++.+.|+++.+++.++|.|.. .+.++++|++.++.+.++..++++.+..++|. ..+ +.
T Consensus 1 dv~eLt~~l~Gg~~~~~~rr~i~~~i~~dP~f~~~~~~~~lsr~e~~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF14749_consen 1 DVEELTNFLDGGEEKLERRREIESLIESDPIFSKPPDRYFLSREERYERALRKARRLIKLLKQLGWDDNQDPDDAFMIGL 80 (125)
T ss_dssp -HHHHHHHHHSSHHHHHHHHHHHHHHHT-GGG---TTGGGS-HHHHHHHHHHHHHHHHHHHHHTT-----SHHHHHHH--
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHhhChhhhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 7899999999999999999999999999999998 56689999999999999999999999999994 222 22
Q ss_pred HHhhhcCCcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccce
Q 009460 88 MLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (534)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~ 132 (534)
....+++.+.|+.+|++||.++|..+||+||+++|||++.+.+||
T Consensus 81 ~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 81 LMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred HHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 346667888999999999999999999999999999999999875
No 46
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.41 E-value=2.5e-13 Score=99.98 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=46.3
Q ss_pred eEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEe
Q 009460 134 CYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL 192 (534)
Q Consensus 134 ~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~ 192 (534)
|||+|||++|+|+..++|+|+++ +++|+|| |.|+||++ +..||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~--~~~~~L~-----G~K~~v~~-~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRD--GDGYVLN-----GEKRFVSN-APDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEE--TTEEEEE-----EEEEEEET-TTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecc--cceEEEe-----eEEEEECC-cCccCEEEEEEEE
Confidence 78999999999999999999999 7889999 99999999 8999999999997
No 47
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.33 E-value=1.9e-11 Score=108.88 Aligned_cols=130 Identities=18% Similarity=0.056 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc--cCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009460 286 QTIVADASCALSRAVCIATRYSAVRRQ--FGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 363 (534)
Q Consensus 286 ~~~aa~~~g~~~~al~~av~Ya~~R~q--fg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 363 (534)
+.+++.++|+++++++.+++|++.|.. .+. ++.+.+.+|.+++++.+.+++++...+.++..+++...
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~-------~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~--- 70 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGA-------PLADDPYIQARLGEAAARLDAARALLYRAARRLWEAAD--- 70 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-------BCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-------chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 357889999999999999999998887 333 89999999999999999999999999999887765432
Q ss_pred cCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhccccccccc
Q 009460 364 ANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGD 426 (534)
Q Consensus 364 ~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~ 426 (534)
.++.. .++........|.++++.+.++++.+++++||.|+...++++|+|||+.....+...
T Consensus 71 ~g~~~-~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 71 AGEEL-TPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp TT-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred ccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 22221 345566778889999999999999999999999999999999999999988776543
No 48
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.49 E-value=6.8e-08 Score=82.92 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=65.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC--------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (534)
||++.++++++++|+.++.. + .....+....+..++|+.+.+.|| |+++||.+.+...
T Consensus 1 t~~~~~l~~~~~~~~~~~~~-~--------~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l 71 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIA-P--------HAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEEL 71 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTH-H--------HHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHch-H--------HHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhh
Confidence 57899999999999976431 0 111121111344668999999997 6788876654321
Q ss_pred ----Ccc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhccc
Q 009460 95 ----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (534)
Q Consensus 95 ----~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~ 130 (534)
.+. .+.+|.+++..+|..+||+|||++|||++.+||
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 72 ARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 122 345666777789999999999999999999986
No 49
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.47 E-value=2.1e-05 Score=84.42 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=137.1
Q ss_pred HHHHHHHHHhcccceeeEecCCCCCC-C----CCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEE-EEE
Q 009460 118 QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV-YAR 191 (534)
Q Consensus 118 q~~~~L~~l~~g~~~~~~a~tE~~~G-s----d~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV-~Ar 191 (534)
--.+|+..+....+..+.|+|.|-.- | .....-...+. ...+|-||+ |.|...++ +..+|.++| ...
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVe-e~~dGIVVr-----GAK~~aT~-a~~a~ei~V~~~~ 209 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEE-ERDDGIVVS-----GAKVVATN-SALTHYNFIGFGS 209 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEE-EcCCcEEEe-----CHHHHhcc-cchhcceeeccCc
Confidence 34689999999999999999987421 1 11112222222 226789999 99999998 899998888 444
Q ss_pred ec--cCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCcc-CcccC-CCCC----------cceeeeCccccCccccccc
Q 009460 192 LI--TDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF-GNGAY-NTMD----------NGVLRFEHVRIPRNQMLMR 257 (534)
Q Consensus 192 ~~--~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~-G~~~~-~~~~----------~~~v~fd~vrVP~~~lL~~ 257 (534)
.. .+.+++- ..|.|| .++|||++--....- +..+. ...| -+-|.||||+||-++++.
T Consensus 210 ~~~~~~d~dyA-vaFavP-------~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~- 280 (519)
T TIGR02310 210 AQIIGDNDDFA-LMFIAP-------MDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLI- 280 (519)
T ss_pred ccccCCCCCeE-EEEEeE-------cCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHcee-
Confidence 31 1233343 379999 899999886332211 00000 0111 256999999999999985
Q ss_pred cccccCCCcee-ccCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHH
Q 009460 258 VSQVTREGKYV-QSNVPRQLLYGTMVYVRQ-TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLF 335 (534)
Q Consensus 258 ~~~v~~~g~~~-~~~~~~~~~~~~l~~~r~-~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla 335 (534)
++++..-..+. ..... ..+......|. ..+-..+|++..+ +++. -+..|+.||.+|+
T Consensus 281 ~gd~e~~~~~~~~~~~~--~~~~~q~~~r~~~k~dfl~G~a~~~----ae~~---------------G~~~~~hVqekl~ 339 (519)
T TIGR02310 281 YRDFERCRTWAQYGGFA--RLFPMQACTRLAVKLDFITGLLHKA----LQCT---------------GVLEFRGVQAQMG 339 (519)
T ss_pred cCCHHHHHhHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHh---------------CcccchHHHHHHH
Confidence 11111101011 10000 00000011121 1111222322222 2221 3457999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009460 336 PLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS-TLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (534)
Q Consensus 336 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG 401 (534)
++++..+.++++...+...- ...... -.++ ...+..+|.+.+...-++.+.+.+.+||
T Consensus 340 Eli~~~E~~~a~~~Aa~~~~-------~~~~~G~~~P~-~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 340 EVVAWRNLFWTLTDAMAGSA-------YQWKNGAQLPS-AQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------ccCCCCeEeeC-HHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 99999999988776553211 011111 1122 3345678999999999999999877664
No 50
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=3.5e-05 Score=80.23 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=145.6
Q ss_pred CCCHHH--HHHHHHHHhcccceeeEecCCCCCC-----CCCC--CCceEEEEeCCCCeEEEecCCCCccccccCCCCCCc
Q 009460 113 QGTDEQ--HQKWLPLAYKMEIIGCYAQTELGHG-----SNVQ--GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 183 (534)
Q Consensus 113 ~Gt~eq--~~~~L~~l~~g~~~~~~a~tE~~~G-----sd~~--~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A 183 (534)
+|++-. -.+|+..+....+..+-|+|.|-.- +-.. .+-...+- ...+|-|++ |.|..+++ +..+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVve-e~~dGIVVr-----GAK~~aT~-~a~t 197 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVE-ETEDGIVVR-----GAKALATG-SALT 197 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEE-EecCceEEE-----ChHHHhcc-cccc
Confidence 556543 3689999999999999999987421 1111 12222222 225789999 99999999 8899
Q ss_pred cEEEEE-EEecc-CCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCc-cCcccCCCC------------CcceeeeCccc
Q 009460 184 THAVVY-ARLIT-DGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK-FGNGAYNTM------------DNGVLRFEHVR 248 (534)
Q Consensus 184 ~~~lV~-Ar~~~-~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k-~G~~~~~~~------------~~~~v~fd~vr 248 (534)
|..+|+ .+.-. ++++.- ..|.|| .+.|||.+--.... .+ .++.+. .-+.|.||||+
T Consensus 198 dei~V~Pt~~~~~~d~dfA-v~FaiP-------~dt~GvK~i~r~s~~~~-~~~~~g~fd~plssrfde~dailVfDdVf 268 (493)
T COG2368 198 DEIFVLPTRSMQEDDKDFA-VAFAIP-------MDTEGVKFICRRSYELG-RGAEGGPFDYPLSSRFDENDAILVFDDVF 268 (493)
T ss_pred ceEEEeeccccCCCCCceE-EEEEcc-------cCCCceEEEecCcchhh-cccCCCCCCCccccccccCceEEEecccc
Confidence 999988 44322 223333 489999 88999876433211 11 001111 12459999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccCCCCCCCccccc
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALS---RAVCIATRYSAVRRQFGSKNGGPETQVI 325 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~---~al~~av~Ya~~R~qfg~~~~~~e~~i~ 325 (534)
||-++++- |.+++.--... .......+.|...+..-.+-+. .+....+++. -+.
T Consensus 269 VPWERVf~-y~d~~~~~~~~-------~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~~---------------Gv~ 325 (493)
T COG2368 269 VPWERVFI-YRDLERAYAWY-------AVSGFARLHRQQAVGRKAVKLDFILGAAYLIAETN---------------GVE 325 (493)
T ss_pred cchhheee-eccHHHHHHHH-------HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh---------------Ccc
Confidence 99999884 22111000000 0000111122111111111111 1122222221 356
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 009460 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (534)
Q Consensus 326 ~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~ 405 (534)
+|+.||.+|++|++-.+.+.++...++..-. .......-.-...+-..|.++....-++.+...++.||.-.+
T Consensus 326 ~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~-------~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~ 398 (493)
T COG2368 326 EFRHIQEKLGEMIALLELMWALSDAAAEEAQ-------KNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIIT 398 (493)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceee
Confidence 8999999999999999999887766543211 111111112345567899999999999999999998876555
Q ss_pred ccC
Q 009460 406 CSS 408 (534)
Q Consensus 406 ~~~ 408 (534)
..+
T Consensus 399 lPS 401 (493)
T COG2368 399 LPS 401 (493)
T ss_pred cCc
Confidence 444
No 51
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.04 E-value=0.004 Score=61.38 Aligned_cols=120 Identities=14% Similarity=0.201 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcccceeeEecCCCCC--CCCC----CCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEE
Q 009460 118 QHQKWLPLAYKMEIIGCYAQTELGH--GSNV----QGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYAR 191 (534)
Q Consensus 118 q~~~~L~~l~~g~~~~~~a~tE~~~--Gsd~----~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar 191 (534)
--.+|+..+.+..+..+.|++.|-. +... ..+-...+.. ..+|.+|+ |.|...++ +..||.++|+--
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~-a~~adei~V~p~ 196 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATG-APYADEILVFPT 196 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEET-GCCSSEEEE--S
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcC-CcccccEEEeec
Confidence 4567999999999999999999852 1111 1122233222 25899999 99999998 899999999764
Q ss_pred ec--cCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCC--CCC----------cceeeeCccccCccccc
Q 009460 192 LI--TDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN--TMD----------NGVLRFEHVRIPRNQML 255 (534)
Q Consensus 192 ~~--~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~--~~~----------~~~v~fd~vrVP~~~lL 255 (534)
.. .+.+++ -..|.|| .+.|||++--...... .+ ..| -+.|.||||+||.++++
T Consensus 197 ~~~~~~d~dy-Av~FavP-------~~tpGlk~i~R~s~~~---~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 197 RAMRPGDEDY-AVAFAVP-------MNTPGLKIICRESYAD---GRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSTTCCGGG--EEEEEE-------TT-TTEEEEE---TTG---CCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred cCCCCCCCce-EEEEEcc-------CCCCCEEEEeCCCCCC---CccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 32 122333 3489999 8999998865433222 11 112 24699999999999875
No 52
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=95.92 E-value=0.01 Score=55.81 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=27.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 505 FTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
+++.+++||.++++++++|+||+++++++
T Consensus 34 g~~~~~awn~~~~~l~~~a~Ah~e~~i~~ 62 (187)
T PF01756_consen 34 GKSPFEAWNDCSVQLVRAAKAHAERYILE 62 (187)
T ss_dssp HSSHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999975
No 53
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=86.87 E-value=6 Score=43.27 Aligned_cols=86 Identities=21% Similarity=0.109 Sum_probs=61.4
Q ss_pred HHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHh
Q 009460 300 VCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAG 379 (534)
Q Consensus 300 l~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (534)
+-.+++|...|. |+ .|.+-|.+..||+++.+.+|++.+.+.++.....+ +. +........
T Consensus 418 ~~~~v~~~~~~~--~~-------~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~-------~~----~~~~~e~~l 477 (520)
T PTZ00457 418 FGNAVEATFVRS--GS-------QVPYQQLLLNRLGEAASLLYAASAVASRASMCVSK-------GL----PSAKVEGEL 477 (520)
T ss_pred HHHHHHHHHHHH--Hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC----CchHHHHHH
Confidence 444555555443 44 78999999999999999999999988877554431 11 222223457
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Q 009460 380 LKSLTTTATADGIEECRKLCGGHGYLC 406 (534)
Q Consensus 380 aK~~~t~~a~~~~~~~~q~~GG~Gy~~ 406 (534)
+++||.+...++-..+-+++.. ++..
T Consensus 478 a~~fc~~a~~rv~~~~~~~~~~-~~~~ 503 (520)
T PTZ00457 478 ASAFIAMAVSRARQLSEESCNV-GKTA 503 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 8999999999988888888876 5543
No 54
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=84.39 E-value=16 Score=34.82 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=67.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 009460 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (534)
Q Consensus 323 ~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~ 402 (534)
-+..|+.||.+|++++...+.+++++..+.... ..........-.....++|.+..+..-++++.+++++||.
T Consensus 43 G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a-------~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~ 115 (205)
T PF03241_consen 43 GIDKFPHVQEKLGELIAYLETLRALLIAAEAEA-------EPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGG 115 (205)
T ss_dssp TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT--------EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356799999999999999999998877553211 1111111112234567899999999999999999999987
Q ss_pred cccccC-------ChhHHhhhhcccc-cccccHHHHHHHHHHHH
Q 009460 403 GYLCSS-------GLPELFAVYVPAC-TYEGDNIVLLLQVARFL 438 (534)
Q Consensus 403 Gy~~~~-------~l~~~~rd~~~~~-~~eG~~~vl~~~ia~~l 438 (534)
=.+..+ .+..++....... -..+...+-..+++..+
T Consensus 116 li~~Ps~~Df~npe~~~~l~kYl~g~~~~~aeeR~rl~rLawDl 159 (205)
T PF03241_consen 116 LITLPSEADFDNPEIGPYLDKYLQGANGVSAEERVRLFRLAWDL 159 (205)
T ss_dssp GTC---HHHHH-TTTHHHHHHHT-BTTTC-HHHHHHHHHHHHHH
T ss_pred eeeCCCHHHhCCcchhHHHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 655432 3444444443333 44444455555555555
No 55
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=71.94 E-value=45 Score=36.52 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009460 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (534)
Q Consensus 323 ~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG 401 (534)
-|.+-|.+-+|||+.++.+|++.+...++.+.+.. .++......+.++++|++....+...+-++-++
T Consensus 536 ~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~i-----------gl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 536 GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSI-----------GLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999998888766641 223455567789999999999998888877766
No 56
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=24.55 E-value=5.2e+02 Score=30.01 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=55.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 009460 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (534)
Q Consensus 323 ~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~ 402 (534)
.|..-|.+..||++++..+|++.+.+.+.- + .+. + +... ..+.+.+.++..++.+.+-+.
T Consensus 562 ~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~-------~~~----~--~~~~----~l~~~~~~~~~~~~~~~~~~~ 621 (777)
T PRK09463 562 SLKRRERLSARLGDILSQLYLASAVLKRYE---D-------EGR----P--EADL----PLVHWAVQDALYQAEQALDGL 621 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-------CCC----c--hhHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999877666552 1 111 1 1112 233444444444444443221
Q ss_pred cccccCC-hhHHhhhhcc--cccccccHHHHHHHHHHHHHH
Q 009460 403 GYLCSSG-LPELFAVYVP--ACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 403 Gy~~~~~-l~~~~rd~~~--~~~~eG~~~vl~~~ia~~ll~ 440 (534)
----.++ +..++|-... ...+.+.++.+..++|+.++.
T Consensus 622 ~~n~p~~~~~~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 622 LRNFPNRVVAGLLRVLVFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHcCCchHHHHHHHHeeeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 1111122 3334443321 345778889999999998874
No 57
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=23.99 E-value=45 Score=34.81 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhccccccccCChhHHhhhhcccc--cccccHHHHHHHHHHHHHHHHHHhcCC
Q 009460 385 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC--TYEGDNIVLLLQVARFLMKTVSQLGYG 448 (534)
Q Consensus 385 t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~--~~eG~~~vl~~~ia~~ll~~~~~~~~~ 448 (534)
+..|.++--+.+++||+|||+- ++++....--+ -|.|+ -.-|.++...+++..+++-..
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi----~qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~ 215 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLL----SQFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGA 215 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHH----HHhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCC
Confidence 3445556667889999999984 34444333333 36776 566778888888888776443
No 58
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=22.12 E-value=2.1e+02 Score=25.49 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCceEEEEEEeccCCCCCCCCCeEEeeCCC
Q 009460 198 DHGVNGFIVQLRSLEDHSPLPGITIGDIGM 227 (534)
Q Consensus 198 ~~G~~~flV~ir~~~~~~~~pGv~i~~~~~ 227 (534)
..-+.+-|+|+| .++.+.|.|+|....+
T Consensus 88 ~~~~~l~LIPL~--~G~L~lP~V~i~~~~~ 115 (147)
T PF12584_consen 88 EHEIPLTLIPLR--AGYLPLPKVEIRPYDP 115 (147)
T ss_pred eEEEEEEEEecc--cceecCCEEEEEeccC
Confidence 345778899988 3557899999988763
Done!