Query 009460
Match_columns 534
No_of_seqs 383 out of 2566
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:41:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ddh_A Acyl-COA oxidase; beta 100.0 3.7E-86 1.3E-90 733.3 53.5 527 1-533 1-537 (661)
2 1w07_A Acyl-COA oxidase; oxido 100.0 7E-85 2.4E-89 724.0 56.7 532 1-533 1-533 (659)
3 2z1q_A Acyl-COA dehydrogenase; 100.0 1.5E-58 5.2E-63 506.6 35.8 440 28-533 29-493 (577)
4 3owa_A Acyl-COA dehydrogenase; 100.0 2.1E-57 7E-62 497.8 37.3 370 27-444 33-428 (597)
5 2jif_A Short/branched chain sp 100.0 9E-57 3.1E-61 473.1 30.1 358 25-441 27-403 (404)
6 3pfd_A Acyl-COA dehydrogenase; 100.0 7.2E-57 2.5E-61 472.4 25.4 362 19-440 13-393 (393)
7 2d29_A Acyl-COA dehydrogenase; 100.0 4.1E-56 1.4E-60 465.6 30.9 357 27-441 7-386 (387)
8 1ukw_A Acyl-COA dehydrogenase; 100.0 3.2E-56 1.1E-60 465.2 29.8 354 28-440 6-378 (379)
9 1buc_A Butyryl-COA dehydrogena 100.0 6.8E-56 2.3E-60 463.4 31.4 356 27-439 5-382 (383)
10 2vig_A Short-chain specific ac 100.0 4.8E-56 1.6E-60 465.8 29.9 360 27-444 6-384 (391)
11 1egd_A Medium chain acyl-COA d 100.0 4.3E-56 1.5E-60 466.9 28.9 359 26-442 15-394 (396)
12 1ivh_A Isovaleryl-COA dehydrog 100.0 3.8E-56 1.3E-60 467.0 28.4 359 26-442 12-393 (394)
13 3p4t_A Putative acyl-COA dehyd 100.0 7.7E-56 2.6E-60 466.0 29.7 365 14-438 15-399 (403)
14 3r7k_A Probable acyl COA dehyd 100.0 6.1E-56 2.1E-60 466.8 28.3 353 27-438 29-401 (403)
15 2dvl_A Acyl-COA dehydrogenase; 100.0 9.2E-56 3.1E-60 460.6 28.0 350 28-440 4-372 (372)
16 2pg0_A Acyl-COA dehydrogenase; 100.0 2.6E-55 9E-60 459.3 31.5 355 26-438 9-383 (385)
17 1rx0_A Acyl-COA dehydrogenase 100.0 3.6E-55 1.2E-59 459.4 31.2 356 26-440 18-392 (393)
18 4hr3_A Putative acyl-COA dehyd 100.0 3.2E-55 1.1E-59 463.1 30.1 366 20-443 4-413 (415)
19 3nf4_A Acyl-COA dehydrogenase; 100.0 1.7E-55 5.8E-60 461.0 25.7 353 27-440 16-387 (387)
20 3ii9_A Glutaryl-COA dehydrogen 100.0 7.5E-56 2.6E-60 465.0 22.9 360 20-441 14-392 (396)
21 2ix5_A Acyl-coenzyme A oxidase 100.0 4.8E-55 1.6E-59 463.8 26.9 352 26-440 54-424 (436)
22 3sf6_A Glutaryl-COA dehydrogen 100.0 1.4E-54 4.9E-59 456.3 29.6 356 20-441 25-399 (403)
23 2eba_A Putative glutaryl-COA d 100.0 1.2E-54 4.2E-59 454.2 28.4 351 27-440 11-381 (385)
24 3swo_A Glutaryl-COA dehydrogen 100.0 5.8E-55 2E-59 458.8 24.2 352 26-441 25-394 (399)
25 2wbi_A Acyl-COA dehydrogenase 100.0 6.3E-54 2.2E-58 454.8 32.2 377 15-444 13-422 (428)
26 3mpi_A Glutaryl-COA dehydrogen 100.0 5.4E-54 1.9E-58 451.1 25.6 354 26-438 4-382 (397)
27 2uxw_A VERY-long-chain specifi 100.0 2.2E-53 7.6E-58 467.0 30.7 353 33-442 56-432 (607)
28 1r2j_A Protein FKBI; polyketid 100.0 1E-53 3.5E-58 444.2 24.7 318 69-440 26-363 (366)
29 1siq_A GCD, glutaryl-COA dehyd 100.0 1.9E-53 6.5E-58 446.2 26.9 354 26-440 13-384 (392)
30 3mkh_A Nitroalkane oxidase; ox 100.0 3.4E-52 1.2E-56 443.0 28.8 370 26-441 6-417 (438)
31 2c12_A Nitroalkane oxidase; ox 100.0 8.1E-50 2.8E-54 424.7 30.1 364 27-439 6-418 (439)
32 3mxl_A Nitrososynthase; flavin 100.0 3.4E-49 1.2E-53 414.2 21.0 358 27-440 9-393 (395)
33 3m9v_A FAD-dependent oxidoredu 100.0 5.7E-48 1.9E-52 410.6 21.9 367 17-441 12-405 (439)
34 2or0_A Hydroxylase; APC7385, r 100.0 2.4E-47 8E-52 402.8 21.5 353 28-441 19-402 (414)
35 3djl_A Protein AIDB; alpha hel 100.0 4.4E-46 1.5E-50 403.3 25.2 324 70-441 89-442 (541)
36 2rfq_A 3-HSA hydroxylase, oxyg 100.0 3.4E-46 1.2E-50 391.3 22.8 351 33-440 11-386 (394)
37 2jbr_A P-hydroxyphenylacetate 100.0 2.6E-46 9.1E-51 395.7 20.6 353 33-441 39-415 (422)
38 2yyk_A 4-hydroxyphenylacetate- 100.0 2.1E-34 7.2E-39 307.8 23.8 272 115-438 122-422 (481)
39 1u8v_A Gamma-aminobutyrate met 100.0 2E-34 7E-39 308.4 22.9 275 109-433 119-421 (490)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 1.3E-29 4.5E-34 270.7 26.5 276 113-439 127-431 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.9 5.7E-22 1.9E-26 212.1 26.4 243 117-406 134-392 (517)
42 3owa_A Acyl-COA dehydrogenase; 91.2 1.5 5E-05 47.5 12.5 125 296-441 467-592 (597)
43 2uxw_A VERY-long-chain specifi 58.4 69 0.0024 34.3 12.1 67 323-400 509-575 (607)
44 2z1q_A Acyl-COA dehydrogenase; 24.2 6.3E+02 0.022 26.4 13.6 97 323-441 471-570 (577)
No 1
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=3.7e-86 Score=733.34 Aligned_cols=527 Identities=45% Similarity=0.769 Sum_probs=448.3
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 009460 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (534)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 80 (534)
|+| ||++||++++||+++|+.+|+|++++.++|+++++++.++|.|...+...+++++.++....+...+.+.+.++|
T Consensus 1 ~~~--~l~~er~~~~f~~~~l~~~l~g~~~~~~~r~~~~~~l~~~p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~ 78 (661)
T 2ddh_A 1 MNP--DLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYG 78 (661)
T ss_dssp CCH--HHHHHHHHCSSCHHHHHHHHHTSHHHHHHHHHHHHHHHTCGGGCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCh--HHHHHHhhCCCCHHHHHHHHCCChhHHHHHHHHHHHHhcCcccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566 899999999999999999999999999999999999999998876555578898898888777777777767788
Q ss_pred CCHHHHH-HHhhhcCC--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeC
Q 009460 81 LSEEEAS-MLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 157 (534)
Q Consensus 81 ~~~~~gg-~~~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~ 157 (534)
+...... ....+++. +.++.+|+++++++|..+||++|+++|||++.+|++++|||+|||+||||+.+++|+|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~ 158 (661)
T 2ddh_A 79 ISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDP 158 (661)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred CCCchHHHHHHHHhccchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcC
Confidence 7532211 12222232 57788998899999999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCC
Q 009460 158 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM 237 (534)
Q Consensus 158 ~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~ 237 (534)
++|+|+||||+++|+|+||+|++..||+++|+|+++++++++|+++|+||+||+++|.+.|||+|+++|+|+| ++++
T Consensus 159 ~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~G---l~g~ 235 (661)
T 2ddh_A 159 KTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFG---YEEM 235 (661)
T ss_dssp TTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSS---CTTC
T ss_pred CCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCccccc---CCCC
Confidence 7899999999999999999986789999999999987666789999999999999999999999999999999 9999
Q ss_pred CcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 009460 238 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKN 317 (534)
Q Consensus 238 ~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~ 317 (534)
++++|.||||+||++++|+++++|.++|.+..+...+ ..+..|..+|+.+++.++|+++++++++++|+++|+|||+++
T Consensus 236 ~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~ 314 (661)
T 2ddh_A 236 DNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQ 314 (661)
T ss_dssp CCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSST
T ss_pred cceEEEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCC
Confidence 9999999999999999999988888788886543333 667788899999999999999999999999999999999877
Q ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 009460 318 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 397 (534)
Q Consensus 318 ~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q 397 (534)
+.+|.||++||.+|++|+++++.+++++++++++++.+++.....+.++.....+.+..++++|+++++.+.+++++|+|
T Consensus 315 ~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~~~a~q 394 (661)
T 2ddh_A 315 SEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRM 394 (661)
T ss_dssp TSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999888643322222332223467889999999999999999999999
Q ss_pred HhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchh-HhhhhcC--CCCcc
Q 009460 398 LCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLMQCHC--GVQKA 474 (534)
Q Consensus 398 ~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~--~~~~~ 474 (534)
+|||+||+++++++++|||+++.++++|+|+++++++|+.+|+.+++..+++...++..||.+.. ...+.++ ...+.
T Consensus 395 ~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 474 (661)
T 2ddh_A 395 ACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSQRIQPQQVAVWPTM 474 (661)
T ss_dssp HTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTCCCCGGGGGGGGCCC--------------
T ss_pred HhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHhhhhhhccccccccccch
Confidence 99999999999999999999999999999999999999999999988777766667899998653 2211111 12346
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHh----ccCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 475 EDWLNPSAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
.++.|+++++++|++|+++++..++++++ ++++.+++||.++++++++|+||+++++++
T Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~a~n~~~~~~~~~a~a~~~~~~~~ 537 (661)
T 2ddh_A 475 VDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVK 537 (661)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999998874 356789999999999999999999999985
No 2
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=7e-85 Score=724.04 Aligned_cols=532 Identities=82% Similarity=1.297 Sum_probs=449.5
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 009460 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (534)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 80 (534)
|.|.+||++||++++||+++|..++.+++|+.++|+++++|+.++|.|........+..+.+...+.....+.....++|
T Consensus 1 ~~~~~~l~~er~~~~f~~~~l~~~~~~~~e~~~lr~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G 80 (659)
T 1w07_A 1 MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLRKCAHAFKRIIELR 80 (659)
T ss_dssp -CCCCTTHHHHTTCSSCHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGCCTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHccCCCCHHHHHHHHCCChHHHHHHHHHHHHHhcCcccccCCccCCChHHHHHHHHHHHHHHHHhHHHhC
Confidence 77889999999999999999999999989999999999999999988753222334444433333222111122223444
Q ss_pred CCHHHHHHHhhhcCCcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCC
Q 009460 81 LSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (534)
Q Consensus 81 ~~~~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~ 160 (534)
+...........++.+.++.+|+.+++++|..+||++||++|||++++|++++|+|+|||+||||+.+++|+|++|+++|
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~ 160 (659)
T 1w07_A 81 LNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTD 160 (659)
T ss_dssp CCHHHHHHHHHHHCCCCHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTT
T ss_pred CCchHHHHHHHHhccchhhhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCC
Confidence 33222112223345555577888899999999999999999999999999999999999999999999999999997778
Q ss_pred eEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcc
Q 009460 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (534)
Q Consensus 161 ~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~ 240 (534)
+|+||||+++|+|+||+|++..||+++|+||++++++++|+++|+||+||+++|.+.|||+|+++|+|+|...+++++++
T Consensus 161 g~vLntP~~~G~K~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~ 240 (659)
T 1w07_A 161 EFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240 (659)
T ss_dssp EEEEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCE
T ss_pred EEEEcCCCCCeEEEeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCce
Confidence 99999999999999999866899999999999876667799999999999999999999999999999983335789999
Q ss_pred eeeeCccccCccccccccccccCCCceecc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC
Q 009460 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQS-NVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGG 319 (534)
Q Consensus 241 ~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~-~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~ 319 (534)
+|.||||+||++++|+++++|.++|.++.+ ...+ ..+..|..+|+.+++.++|+++++++++++|+++|+|||++++.
T Consensus 241 ~v~fd~VrVP~~~lLg~~~~v~~~g~~~~~~~~~~-~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 319 (659)
T 1w07_A 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQ-LVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGG 319 (659)
T ss_dssp EEEESSEEEEGGGBCCSSEEECTTCCEEECSSCGG-GCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---C
T ss_pred EEEeccEEECHHHhcCCcCccCCCCceecCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCC
Confidence 999999999999999999999888888763 2222 45667788999999999999999999999999999999987777
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 009460 320 PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 399 (534)
Q Consensus 320 ~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~ 399 (534)
+|.||++||.+|++|+++++.+++++++++++++.+++....++.++.....+.+..++++|+++++.+.+++++|+|+|
T Consensus 320 ~e~pi~~~q~vq~rLa~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~~a~~~~~~a~q~~ 399 (659)
T 1w07_A 320 IETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLC 399 (659)
T ss_dssp CCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999988876655544444333346788999999999999999999999999
Q ss_pred ccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHhhhhcCCCCcccccCC
Q 009460 400 GGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLN 479 (534)
Q Consensus 400 GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 479 (534)
||+||+++++++++|||++..++++|+|+++++++++.+|+.+++..+++++.++..||.+.......+....+..++.|
T Consensus 400 GG~G~~~~~~l~r~~rda~~~~~~eG~~~v~~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 479 (659)
T 1w07_A 400 GGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAEDWLN 479 (659)
T ss_dssp GGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHHTTTTTSCCCCGGGGGGGGHHHHTSCCCCCCSGGGGGC
T ss_pred cCcccccccCHHHHHHhcceeEEEeCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhhhhhccccccCchhhcCC
Confidence 99999999999999999999999999999999999999999998877777777899999876554433333334578999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 480 PSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 480 ~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
+++++++|++|+++++..+++++++.++.+++||+++++++++|+||+++++++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~a~a~~~~~~~~ 533 (659)
T 1w07_A 480 PDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVS 533 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997777889999999999999999999999985
No 3
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-58 Score=506.61 Aligned_cols=440 Identities=19% Similarity=0.206 Sum_probs=345.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhc---------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV--------- 93 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~--------- 93 (534)
++|+.++++.+++|+.++.... .++...........+|+.+.++|| |+++||.+.+..
T Consensus 29 ~~e~~~l~~~~~~~~~~~~~p~--------~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel 100 (577)
T 2z1q_A 29 DESVKEIARTTRTFVEREVLPL--------LERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL 100 (577)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHH--------HHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCchh--------HHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 5788999999999998642100 011100001234678999999997 788988765432
Q ss_pred CC--c--chhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009460 94 DE--P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (534)
Q Consensus 94 ~~--~--~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~ 169 (534)
.. + ..+.+|.+++..+|..+||++||++|||++++|++++|+++|||++|||+.+++|+|++++++++|+||
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLn---- 176 (577)
T 2z1q_A 101 SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILN---- 176 (577)
T ss_dssp TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEE----
T ss_pred hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEE----
Confidence 11 1 123456666677899999999999999999999999999999999999999999999997768899999
Q ss_pred CccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcccc
Q 009460 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (534)
Q Consensus 170 ~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (534)
|+|+||+| +..||+++|+|+++ + .|+++|+|| .+.|||++++.++++| +++++++.|.||||+|
T Consensus 177 -G~K~~it~-a~~Ad~~~V~Ar~~--g--~gis~flVp-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fddv~V 240 (577)
T 2z1q_A 177 -GVKQWISN-AGFAHLFTVFAKVD--G--EHFTAFLVE-------RDTPGLSFGPEEKKMG---IKASSTRQVILEDVKV 240 (577)
T ss_dssp -EEEEEEET-TTTCSEEEEEEEET--T--TEEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEEEEEE
T ss_pred -EEeeCCCC-CCccCEEEEEEEeC--C--CeeEEEEEe-------CCCCCeEecCCCCCCC---CCCCceeEEEecceec
Confidence 99999999 88999999999975 2 589999999 7899999999999999 9999999999999999
Q ss_pred CccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHH
Q 009460 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (534)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~ 329 (534)
|.+++||. .|.++. .....+..+|+.+++.++|+++++++++++|+++|+|||+ ||++||.
T Consensus 241 P~~~llg~------~g~g~~------~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~-------pi~~~q~ 301 (577)
T 2z1q_A 241 PVENVLGE------IGKGHK------IAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGR-------PIGRFGL 301 (577)
T ss_dssp EGGGEESC------TTCTHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSSS-------BGGGSHH
T ss_pred cHHHccCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------chhhhHH
Confidence 99999984 566665 5667788899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC------chhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 009460 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST------LPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (534)
Q Consensus 330 ~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~G 403 (534)
+|++|++|.+.+++++++++++++.+++... ++... ..+.+..++++|+++++.+.+++++|+|+|||+|
T Consensus 302 vq~~La~~~~~~~aar~~~~~aa~~~d~~~~----~~~~~~~~~~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G 377 (577)
T 2z1q_A 302 IQQKLGEMASRIYAAESAVYRTVGLIDEALL----GKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYG 377 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ccccchhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCee
Confidence 9999999999999999999999888775321 01000 1245677899999999999999999999999999
Q ss_pred ccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchh-HhhhhcCCCCcccccCChHH
Q 009460 404 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLMQCHCGVQKAEDWLNPSA 482 (534)
Q Consensus 404 y~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 482 (534)
|+++++++++|||++..++++|+|++++.++++.+++...+ +. .....++.+.. .+.... ....+.+...
T Consensus 378 ~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~~~~---~~--l~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 448 (577)
T 2z1q_A 378 YSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRRALK---GQ--LPLMQAAQRLQKELLEPS----FEEPEDLELH 448 (577)
T ss_dssp GBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC------------------------------------CCHHHH
T ss_pred ecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHHHhh---cC--CcHHHHHHHHHHHHcCCC----CChhHHHHHH
Confidence 99999999999999999999999999999999999865432 11 11113444332 111100 1223444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460 483 ILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVS 533 (534)
Q Consensus 483 ~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 533 (534)
+++.+..+...++..+..++.+... .-+..+.++|.+|+++|++.
T Consensus 449 ~l~~~~~~~~~~~~~~~~~~~~~l~------~~q~~l~~lad~~~~~~~~~ 493 (577)
T 2z1q_A 449 QVQNLKKLALMVAGLAVQKYGQGVE------EEQEVLGAVADILIDAYAAE 493 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGG------GCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877777776643311 11478899999999988763
No 4
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=2.1e-57 Score=497.77 Aligned_cols=370 Identities=21% Similarity=0.280 Sum_probs=313.7
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHH-HHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKN-TLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------ 94 (534)
-++||.++++++++|+.++.. +. .+..+. ......++|+.+.++|| |+++||.+.+...
T Consensus 33 lt~eq~~l~~~vr~f~~~~~~-p~--------~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~E 103 (597)
T 3owa_A 33 FSSEHKMIAKTTEDFIVNEVL-PE--------LEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAE 103 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHTG-GG--------HHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCc-hh--------HHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHH
Confidence 357899999999999987532 11 011111 12345678999999997 7899987755421
Q ss_pred ---C----cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009460 95 ---E----PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (534)
Q Consensus 95 ---~----~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp 167 (534)
. ..++..|..+....|..+||++||++|||++++|+.++|+++|||++|||+.+++|+|++++++++|+||
T Consensus 104 el~~~~~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLn-- 181 (597)
T 3owa_A 104 KFSRAGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLN-- 181 (597)
T ss_dssp HHGGGTHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEE--
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEe--
Confidence 1 1223456556666788899999999999999999999999999999999999999999998778899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcc
Q 009460 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (534)
Q Consensus 168 ~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~v 247 (534)
|+|+||+| +..||+++|+|+++. .|+++|+|| .+.|||++++.|+++| +++++++.|.||||
T Consensus 182 ---G~K~~is~-a~~Ad~~lV~Art~~----~g~s~flV~-------~~~pGv~v~~~~~~~G---lrgs~t~~v~fddV 243 (597)
T 3owa_A 182 ---GEKQWITN-SAFADVFIVYAKIDG----EHFSAFIVE-------KDYAGVSTSPEEKKMG---IKCSSTRTLILEDA 243 (597)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEEETT----TEEEEEEEE-------TTSTTEEECCCCCBSS---CTTSCEEEEEEEEE
T ss_pred ---eEEEEeCC-CccCCEEEEEEEeCC----CceEEEEEe-------CCCCCeEEeccccccc---CCCCCceEEEEece
Confidence 99999999 899999999999752 379999999 8899999999999999 99999999999999
Q ss_pred ccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccch
Q 009460 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (534)
Q Consensus 248 rVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~ 327 (534)
+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 244 ~VP~~~lLG~------~g~G~~------~~~~~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~-------pi~~~ 304 (597)
T 3owa_A 244 LVPKENLLGE------IGKGHI------IAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQ-------PIARF 304 (597)
T ss_dssp EEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred eecHHHhcCc------ccchHH------HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------ccccc
Confidence 9999999984 565554 6677888999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------CCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 009460 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF-------STLPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (534)
Q Consensus 328 q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~G 400 (534)
|.+|++|++|.+.+++++++++++++.+++........+. ....+.+..++++|+++++.+.+++++|+|+||
T Consensus 305 q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~ase~a~~v~~~a~qi~G 384 (597)
T 3owa_A 305 PLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHG 384 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999988754311000000 000134667899999999999999999999999
Q ss_pred cccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHH
Q 009460 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 444 (534)
Q Consensus 401 G~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~ 444 (534)
|+||+++++++++|||++...+++|+|++++..|++.+++.+.+
T Consensus 385 G~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ll~~~~k 428 (597)
T 3owa_A 385 GYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRKAMK 428 (597)
T ss_dssp GGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred CccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987643
No 5
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=9e-57 Score=473.09 Aligned_cols=358 Identities=19% Similarity=0.259 Sum_probs=307.0
Q ss_pred HcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-----
Q 009460 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD----- 94 (534)
Q Consensus 25 ~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~----- 94 (534)
+.-++||.++++++++|++++... . ....+.......++|+.+.+.|| |+++||.+.++.+
T Consensus 27 ~~~~~e~~~l~~~~r~~~~~~~~p-~--------~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~ 97 (404)
T 2jif_A 27 QTFTDEEMMIKSSVKKFAQEQIAP-L--------VSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVI 97 (404)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTGG-G--------HHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCcc-c--------HHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHH
Confidence 345689999999999999875321 0 11122222234578999999997 6888887654321
Q ss_pred -------Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEe
Q 009460 95 -------EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (534)
Q Consensus 95 -------~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLn 165 (534)
.+.+ +.+|..++...|..+|+++||++|||++.+|+ ++|+++|||++|||+..++|+|+++ +|+|+||
T Consensus 98 eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~--g~g~vln 174 (404)
T 2jif_A 98 EELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKE--GDYYVLN 174 (404)
T ss_dssp HHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEe--CCEEEEE
Confidence 1222 23455567788999999999999999999986 7999999999999999999999998 8899999
Q ss_pred cCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeC
Q 009460 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFE 245 (534)
Q Consensus 166 tp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd 245 (534)
|+|+|++| +..||+++|+|+++.++++.|+++|+|| .+.|||++.+.|+++| ++++++++|.||
T Consensus 175 -----G~K~~is~-a~~Ad~~~v~ar~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd 238 (404)
T 2jif_A 175 -----GSKMWISS-AEHAGLFLVMANVDPTIGYKGITSFLVD-------RDTPGLHIGKPENKLG---LRASSTCPLTFE 238 (404)
T ss_dssp -----EEEEEEET-TTTCSEEEEEEESCGGGGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEE
T ss_pred -----eEEEeecC-CcccCEEEEEEEeCCCCCCCceEEEEEe-------cCCCCeEeccCccccc---CCCCceEEEEEc
Confidence 99999999 8999999999998655455789999999 7899999999999999 999999999999
Q ss_pred ccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccccc
Q 009460 246 HVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (534)
Q Consensus 246 ~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~ 325 (534)
||+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||+
T Consensus 239 ~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~ 299 (404)
T 2jif_A 239 NVKVPEANILGQ------IGHGYK------YAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGK-------RLF 299 (404)
T ss_dssp EEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGG
T ss_pred cEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------ccc
Confidence 999999999984 455544 5566778899999999999999999999999999999999 999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 009460 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (534)
Q Consensus 326 ~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~ 405 (534)
+||.+|++|++|.+.+++++++++++++.+++ +. +....++++|+++++.+.++++.|+|+|||+||+
T Consensus 300 ~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~ 367 (404)
T 2jif_A 300 DFQGLQHQVAHVATQLEAARLLTYNAARLLEA-------GK-----PFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYT 367 (404)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGB
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----ccHHHHHHHHHHHHHHHHHHHHHHHHhcCcceec
Confidence 99999999999999999999999999877641 11 2345588999999999999999999999999999
Q ss_pred ccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 406 CSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 406 ~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
++++++++|||++...+++|++++++.+|++.+++.
T Consensus 368 ~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~~ 403 (404)
T 2jif_A 368 KDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAE 403 (404)
T ss_dssp TTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhhccceeecCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999875
No 6
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=7.2e-57 Score=472.35 Aligned_cols=362 Identities=22% Similarity=0.232 Sum_probs=304.0
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhc
Q 009460 19 DEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV 93 (534)
Q Consensus 19 ~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~ 93 (534)
.-|++.+ ++||.++++++++|++++.... ....+.......++|+.+.+.|| |+++||.+.++.
T Consensus 13 ~~m~~~~--~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~ 81 (393)
T 3pfd_A 13 SFELFQL--PEEHIALREAIRALAEKEIAPY---------AAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSV 81 (393)
T ss_dssp -----------CHHHHHHHHHHHHHHHTGGG---------HHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHH
T ss_pred cccCCCC--CHHHHHHHHHHHHHHHHhCchH---------HHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHH
Confidence 3466644 4689999999999997653211 11122222234678999999987 789988765542
Q ss_pred C------------Ccchh--hhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCC
Q 009460 94 D------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQT 159 (534)
Q Consensus 94 ~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~ 159 (534)
+ .+.++ ..| .++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +
T Consensus 82 ~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~--~ 158 (393)
T 3pfd_A 82 ATCIVIEEVARVDCSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVAD--G 158 (393)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEE--T
T ss_pred HHHHHHHHHHhhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEc--C
Confidence 1 13333 223 35566788899999999999999999999999999999999999999999999 7
Q ss_pred CeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCc
Q 009460 160 DEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDN 239 (534)
Q Consensus 160 ~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~ 239 (534)
|+|+|| |+|+|++| +..||+++|+|+++.++++.|+++|+|| .+.|||++.+.++++| ++++++
T Consensus 159 ~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~ 222 (393)
T 3pfd_A 159 DDWILN-----GSKCWITN-GGKSTWYTVMAVTDPDKGANGISAFMVH-------KDDEGFTVGPKERKLG---IKGSPT 222 (393)
T ss_dssp TEEEEE-----EEEEEEET-TTTCSEEEEEEESCGGGGGGGEEEEEEE-------TTSTTEEEEEECCBSS---CTTSCE
T ss_pred CEEEEe-----eEEEEecC-CcccCEEEEEEEeCCCCCCCceEEEEEE-------CCCCCeEecCCCCccc---CCCCCc
Confidence 899999 99999999 8999999999998766556789999999 7889999999999999 999999
Q ss_pred ceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC
Q 009460 240 GVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGG 319 (534)
Q Consensus 240 ~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~ 319 (534)
++|.||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 223 ~~v~fddv~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~---- 286 (393)
T 3pfd_A 223 TELYFENCRIPGDRIIGE------PGTGFK------TALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGR---- 286 (393)
T ss_dssp EEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE----
T ss_pred eEEEEccEEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCc----
Confidence 999999999999999984 555554 5667788899999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 009460 320 PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 399 (534)
Q Consensus 320 ~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~ 399 (534)
||++||.+|++|++|.+.+++++++++++++.+++. . ++....++++|+++++.+.++++.|+|+|
T Consensus 287 ---~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~-------~----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~ 352 (393)
T 3pfd_A 287 ---PVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERG-------E----GDLGFISAASKCFASDVAMEVTTDAVQLF 352 (393)
T ss_dssp ---EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C----cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998877631 1 12345578999999999999999999999
Q ss_pred ccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 400 GGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 400 GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
||+||+++++++++|||++...+++|++++++..|++.+|+
T Consensus 353 Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 353 GGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp GGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred chhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999864
No 7
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=4.1e-56 Score=465.65 Aligned_cols=357 Identities=20% Similarity=0.188 Sum_probs=306.9
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (534)
-++||.++++.+++|+.++... .....+.......++|+.+.+.|| |+++||.+.++..
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 77 (387)
T 2d29_A 7 EGAEERQVLGPFREFLKAEVAP---------GAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEA 77 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTGG---------GHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcch---------hHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence 3578999999999999754210 011112111234578999999887 7888887654321
Q ss_pred -----Ccchh--hhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009460 95 -----EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (534)
Q Consensus 95 -----~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp 167 (534)
.+.++ ..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 153 (387)
T 2d29_A 78 IAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKV--EGGWRLN-- 153 (387)
T ss_dssp HHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE--
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEe--CCEEEEE--
Confidence 13332 345457788899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEeccCC----CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceee
Q 009460 168 TLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 243 (534)
Q Consensus 168 ~~~G~K~~v~~la~~A~~~lV~Ar~~~~~----~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~ 243 (534)
|+|+|++| +..||+++|+|+++.++ +++|+++|+|| .+.|||++.+.++++| ++++++++|.
T Consensus 154 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~ 219 (387)
T 2d29_A 154 ---GTKQFITQ-GSVAGVYVVMARTDPPPSPERKHQGISAFAFF-------RPERGLKVGRKEEKLG---LTASDTAQLI 219 (387)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEE-------CCSSSEEECCCCCCSS---CTTSCEEEEE
T ss_pred ---eEEeccCC-CCcCCEEEEEEEeCCccccCCCCCCeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEE
Confidence 99999999 89999999999986443 45689999999 7899999999999999 9999999999
Q ss_pred eCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccc
Q 009460 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (534)
Q Consensus 244 fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~ 323 (534)
||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ |
T Consensus 220 f~~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~ 280 (387)
T 2d29_A 220 LEDLFVPEEALLGE------RGKGFY------DVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGR-------P 280 (387)
T ss_dssp EEEEEEEGGGEESS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------E
T ss_pred EeeEEECHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCc-------c
Confidence 99999999999984 555554 5566788999999999999999999999999999999999 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 009460 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (534)
Q Consensus 324 i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~G 403 (534)
|++||.+||+|++|.+.+++++++++++++.++. +. +....++++|+++++.+.++++.|+|+|||+|
T Consensus 281 i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g 348 (387)
T 2d29_A 281 IAEFEGVSFKLAEAATELEAARLLYLKAAELKDA-------GR-----PFTLEAAQAKLFASEAAVKACDEAIQILGGYG 348 (387)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 9999999999999999999999999999887752 11 23467899999999999999999999999999
Q ss_pred ccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 404 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 404 y~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
|+++++++++|||++...+++|++++++..+++.+++.
T Consensus 349 ~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~~ 386 (387)
T 2d29_A 349 YVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEA 386 (387)
T ss_dssp GSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999863
No 8
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.2e-56 Score=465.18 Aligned_cols=354 Identities=21% Similarity=0.297 Sum_probs=305.8
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC--------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (534)
++|+.++++.+++|+.++... .....+........+|+.+.+.|| |+++||.+.++.+
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel 76 (379)
T 1ukw_A 6 TEEQRQLQALARRFAKEVILP---------VAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEEL 76 (379)
T ss_dssp CHHHHHHHHHHHHHHHHTTGG---------GHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCch---------hHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 578999999999999764321 011122222234678999999997 6888887654321
Q ss_pred ----Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 95 ----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 95 ----~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
.+.+ +..| .++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 150 (379)
T 1ukw_A 77 AYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQ--GDHYVLN--- 150 (379)
T ss_dssp HHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE---
T ss_pred HHhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEe--CCEEEEE---
Confidence 1323 2344 46778899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+|++| +..||+++|+|+++.++++.|+++|+|| .+.|||++.+.|+++| ++++++++|.||||+
T Consensus 151 --G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~~Gv~v~~~~~~~G---~~~~~~~~v~fd~v~ 217 (379)
T 1ukw_A 151 --GTKMWISN-GGEAEWVVVFATVNPELRHKGVVALVVE-------RGTPGFKAIKIHGKMG---QRASGTYELVFEDVK 217 (379)
T ss_dssp --EEEEEEET-TTTEEEEEEEEESCGGGGGGGEEEEEEE-------TTCTTEEEEECCCCSS---CTTSCEEEEEEEEEE
T ss_pred --EEEecccC-CCcCCEEEEEEEcCCCCCCCceEEEEEe-------CCCCCeEecCcccccc---CCCCCeeEEEEeeEE
Confidence 99999999 8999999999998655455789999999 7889999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 218 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~i~~~q 278 (379)
T 1ukw_A 218 VPVENRLGE------EGEGFK------IAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGE-------PIANFQ 278 (379)
T ss_dssp EEGGGEESC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSS-------BGGGSH
T ss_pred ecHHhcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------chhhhH
Confidence 999999984 455443 5566778899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+|++|++|.+.+++++++++++++.+++ +. +....++++|.++++.+.++++.|+|+|||+||++++
T Consensus 279 ~vq~~la~~~~~~~aar~~~~~aa~~~d~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~ 346 (379)
T 1ukw_A 279 AIQFKLVDMLIGIETARMYTYYAAWLADQ-------GL-----PHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREF 346 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhhCCeecCCCC
Confidence 99999999999999999999999887752 11 2345689999999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++|||++...+++|++++++..|++.+|+
T Consensus 347 ~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 347 PVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp SHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999874
No 9
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=6.8e-56 Score=463.41 Aligned_cols=356 Identities=20% Similarity=0.192 Sum_probs=306.9
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHH---hhhcC----
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASML---RSSVD---- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~---~~~~~---- 94 (534)
-++|+.++++.+++|+.++.... ....+........+|+.+.+.|| |+++||.+ .++..
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v 75 (383)
T 1buc_A 5 LTDIQQDFLKLAHDFGEKKLAPT---------VTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILA 75 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTT---------HHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchh---------HHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHH
Confidence 35789999999999997643211 11112222234578999999887 78998887 54421
Q ss_pred --------Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEE
Q 009460 95 --------EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 164 (534)
Q Consensus 95 --------~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vL 164 (534)
.+.+ +.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|++++ +|+|+|
T Consensus 76 ~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~-~~g~~l 154 (383)
T 1buc_A 76 VEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKND-DGTYTL 154 (383)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEE
T ss_pred HHHHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcC-CCEEEE
Confidence 1223 23455577889999999999999999999999999999999999999999999999864 578999
Q ss_pred ecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeee
Q 009460 165 HSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRF 244 (534)
Q Consensus 165 ntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~f 244 (534)
| |+|+|++| +..||+++|+|+++.++++.|+++|+|| .+.|||++.+.++++| +++++++.|.|
T Consensus 155 n-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~~Gv~v~~~~~~~g---~~~~~~~~v~f 218 (383)
T 1buc_A 155 N-----GSKIFITN-GGAADIYIVFAMTDKSKGNHGITAFILE-------DGTPGFTYGKKEDKMG---IHTSQTMELVF 218 (383)
T ss_dssp E-----EEEEEEET-TTTCSEEEEEEESCSSSSTTSEEEEEEE-------TTCTTEEEEEECCCSS---CTTSCEEEEEE
T ss_pred E-----EEEeccCC-CCcCCEEEEEEEeCCCCCCCceEEEEEE-------CCCCCeEecCcccccc---ccCCceeEEEE
Confidence 9 99999999 8999999999998755556789999999 7889999999999999 99999999999
Q ss_pred CccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccc
Q 009460 245 EHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQV 324 (534)
Q Consensus 245 d~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i 324 (534)
|||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||
T Consensus 219 ~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~-------~i 279 (383)
T 1buc_A 219 QDVKVPAENMLGE------EGKGFK------IAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGK-------PL 279 (383)
T ss_dssp EEEEECGGGEESC------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EG
T ss_pred ccEEeCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------ch
Confidence 9999999999984 555554 5566778899999999999999999999999999999999 99
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Q 009460 325 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGY 404 (534)
Q Consensus 325 ~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy 404 (534)
++||.+|++|++|.+.+++++.+++++++.+++ +. +....++++|.++++.+.++++.|+|+|||+||
T Consensus 280 ~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~ 347 (383)
T 1buc_A 280 CKFQSISFKLADMKMQIEAARNLVYKAACKKQE-------GK-----PFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGY 347 (383)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhcCCeec
Confidence 999999999999999999999999999887753 11 245668999999999999999999999999999
Q ss_pred cccCChhHHhhhhcccccccccHHHHHHHHHHHHH
Q 009460 405 LCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (534)
Q Consensus 405 ~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (534)
+++++++++|||++...+++|++++++..+++.++
T Consensus 348 ~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l 382 (383)
T 1buc_A 348 SEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382 (383)
T ss_dssp STTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999875
No 10
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=4.8e-56 Score=465.80 Aligned_cols=360 Identities=21% Similarity=0.256 Sum_probs=309.7
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (534)
-++|+.++++++++|+.++.... ....+........+|+.+.+.|| |+++||.+.++.+
T Consensus 6 ~~~~~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 76 (391)
T 2vig_A 6 LPETHQMLLQTCRDFAEKELFPI---------AAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEE 76 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCccc---------HHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHH
Confidence 36899999999999997642210 11112222234578999999987 7888887654321
Q ss_pred -----Ccc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009460 95 -----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (534)
Q Consensus 95 -----~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp 167 (534)
.+. .+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 152 (391)
T 2vig_A 77 ISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAE--GDSWVLN-- 152 (391)
T ss_dssp HHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE--
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEe--CCEEEEe--
Confidence 111 23445446788899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcc
Q 009460 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (534)
Q Consensus 168 ~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~v 247 (534)
|+|+|++| +..||+++|+|+++.++++.|+++|+|| .+.|||++.+.|+++| ++++++++|.||||
T Consensus 153 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~r~~~~~~v~fd~v 218 (391)
T 2vig_A 153 ---GTKAWITN-AWEASAAVVFASTDRALQNKSISAFLVP-------MPTPGLTLGKKEDKLG---IRGSSTANLIFEDC 218 (391)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECCSSSTTSCEEEEEEE-------SSCTTEEECCCCCBSS---CTTSCEEEEEEEEE
T ss_pred ---eEEEeecC-CCcCCEEEEEEEeCCCCCCCceEEEEEe-------CCCCCeEecCcccccc---CCCCCeeEEEECcE
Confidence 99999999 8999999999998654345689999999 7899999999999999 99999999999999
Q ss_pred ccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccch
Q 009460 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (534)
Q Consensus 248 rVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~ 327 (534)
+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 219 ~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~ 279 (391)
T 2vig_A 219 RIPKDSILGE------PGMGFK------IAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGA-------PLTKL 279 (391)
T ss_dssp EEEGGGEESS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------cchhh
Confidence 9999999984 565554 5566788899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 009460 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (534)
Q Consensus 328 q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~ 407 (534)
|.+|++|++|.+.+++++++++++++.++. +. .....++++|+++++.+.++++.|+|+|||+||+++
T Consensus 280 q~v~~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~ 347 (391)
T 2vig_A 280 QVIQFKLADMALALESARLLTWRAAMLKDN-------KK-----PFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTE 347 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhCCeEecCC
Confidence 999999999999999999999999887751 11 134568999999999999999999999999999999
Q ss_pred CChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHH
Q 009460 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 444 (534)
Q Consensus 408 ~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~ 444 (534)
++++++|||++...+++|++++++..+++.+++.++.
T Consensus 348 ~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~~ 384 (391)
T 2vig_A 348 MPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRS 384 (391)
T ss_dssp SSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHhhcceeecCHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999998754
No 11
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=4.3e-56 Score=466.90 Aligned_cols=359 Identities=21% Similarity=0.272 Sum_probs=306.5
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC------
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------ 94 (534)
.-++|+.++++.+++|+.++... .....+.......++|+.+.+.|| |+++||.+.++..
T Consensus 15 ~~~~~~~~l~~~~r~~~~~~~~~---------~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 85 (396)
T 1egd_A 15 EFTEQQKEFQATARKFAREEIIP---------VAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISE 85 (396)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHH---------HHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCch---------hHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHH
Confidence 34689999999999999763210 011111111233568999999987 6888887654321
Q ss_pred ------Ccchhh-hhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009460 95 ------EPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (534)
Q Consensus 95 ------~~~~~~-~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp 167 (534)
.+.++. .|..++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 86 el~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 161 (396)
T 1egd_A 86 ELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN-- 161 (396)
T ss_dssp HHHHHCHHHHHHHHHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEEC--SSEEEEE--
T ss_pred HHHhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEe--CCEEEEE--
Confidence 133332 45556666788999999999999999999999999999999999999999999988 7899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEeccCCCC---CceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeee
Q 009460 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQD---HGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRF 244 (534)
Q Consensus 168 ~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~---~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~f 244 (534)
|+|+|++| +..||+++|+|+++.+++. .|+++|+|| .+.|||++.+.|+++| ++++++++|.|
T Consensus 162 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~f 227 (396)
T 1egd_A 162 ---GQKMWITN-GGKANWYFLLARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG---QRCSDTRGIVF 227 (396)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECCCCTTSCGGGTEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEE
T ss_pred ---EEEEcccC-CcccCEEEEEEEeCCCCCCCCCCCeEEEEEe-------CCCCCeeeCCcccccc---ccCCCeeEEEE
Confidence 99999999 8999999999998754333 689999999 7899999999999999 99999999999
Q ss_pred CccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccc
Q 009460 245 EHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQV 324 (534)
Q Consensus 245 d~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i 324 (534)
|||+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||
T Consensus 228 d~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i 288 (396)
T 1egd_A 228 EDVKVPKENVLIG------DGAGFK------VAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGK-------LL 288 (396)
T ss_dssp EEEEEEGGGBSSS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTE-------EG
T ss_pred CcEEECHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCc-------ch
Confidence 9999999999984 555554 5566778899999999999999999999999999999999 99
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Q 009460 325 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGY 404 (534)
Q Consensus 325 ~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy 404 (534)
++||.+|++|++|.+.+++++++++++++.++. +. +....++++|+++++.+.++++.|+|+|||+||
T Consensus 289 ~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~ 356 (396)
T 1egd_A 289 VEHQAISFMLAEMAMKVELARMSYQRAAWEVDS-------GR-----RNTYYASIAKAFAGDIANQLATDAVQILGGNGF 356 (396)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TS-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999887752 11 234568999999999999999999999999999
Q ss_pred cccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHH
Q 009460 405 LCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (534)
Q Consensus 405 ~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 442 (534)
+++++++++|||++...+++|++++++..|++.+++.|
T Consensus 357 ~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~~ 394 (396)
T 1egd_A 357 NTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKY 394 (396)
T ss_dssp BTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998765
No 12
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.8e-56 Score=467.02 Aligned_cols=359 Identities=18% Similarity=0.238 Sum_probs=306.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHH--HHHHHHHHcCC-----CHHHHHHHhhhcC----
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAA--YAWKRIIELRL-----SEEEASMLRSSVD---- 94 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~g~-----~~~~gg~~~~~~~---- 94 (534)
.-++|+.++++.+++|+.++.... ....+....... ++|+.+.+.|| |+++||.+.++.+
T Consensus 12 ~~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 82 (394)
T 1ivh_A 12 GLSEEQRQLRQTMAKFLQEHLAPK---------AQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLV 82 (394)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCChh---------HHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 346899999999999997643211 111111111223 78999999987 7888887654321
Q ss_pred --------Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEE
Q 009460 95 --------EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 164 (534)
Q Consensus 95 --------~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vL 164 (534)
.+.+ +.+|..++...|..+|+++||++|||++.+|++++|+++|||++|||+..++|+|+++ +|+|+|
T Consensus 83 ~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l 160 (394)
T 1ivh_A 83 MEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKK--GNHYIL 160 (394)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEEC--SSEEEE
T ss_pred HHHHHhhchhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEc--CCEEEE
Confidence 1222 3345457888999999999999999999999999999999999999999999999998 789999
Q ss_pred ecCCCCccccccCCCCCCccEEEEEEEeccC--CCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCccee
Q 009460 165 HSPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 242 (534)
Q Consensus 165 ntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~--~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v 242 (534)
| |+|+|++| +..||+++|+|+++.+ +++.|+++|+|| .+.|||++.+.++++| ++++++++|
T Consensus 161 n-----G~K~~vs~-~~~Ad~~~v~ar~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v 224 (394)
T 1ivh_A 161 N-----GNKFWITN-GPDADVLIVYAKTDLAAVPASRGITAFIVE-------KGMPGFSTSKKLDKLG---MRGSNTCEL 224 (394)
T ss_dssp E-----EEEEEEET-GGGCSEEEEEEESCTTCSSGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEE
T ss_pred E-----eEEEeeCC-CCcCCEEEEEEEeCCcccCCCCCeEEEEEe-------CCCCCeEecccccccc---CCCCCeeEE
Confidence 9 99999999 8999999999998654 344689999999 7899999999999999 999999999
Q ss_pred eeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcc
Q 009460 243 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 322 (534)
Q Consensus 243 ~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~ 322 (534)
.||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 225 ~fd~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~------- 285 (394)
T 1ivh_A 225 IFEDCKIPAANILGH------ENKGVY------VLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQ------- 285 (394)
T ss_dssp EEEEEEEEGGGEESC------TTCHHH------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTE-------
T ss_pred EECcEEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------
Confidence 999999999999984 455544 5566778899999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 009460 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (534)
Q Consensus 323 ~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~ 402 (534)
||++||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+
T Consensus 286 ~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~ 353 (394)
T 1ivh_A 286 KIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDE-------GH-----CTAKDCAGVILYSAECATQVALDGIQCFGGN 353 (394)
T ss_dssp EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999887651 11 2345688999999999999999999999999
Q ss_pred cccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHH
Q 009460 403 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (534)
Q Consensus 403 Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 442 (534)
||+++++++++|||++...+++|++++++..+++.+++.|
T Consensus 354 g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~~~ 393 (394)
T 1ivh_A 354 GYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 393 (394)
T ss_dssp GGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC-
T ss_pred cccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998754
No 13
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=7.7e-56 Score=465.97 Aligned_cols=365 Identities=19% Similarity=0.216 Sum_probs=309.5
Q ss_pred CCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHH
Q 009460 14 AQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASM 88 (534)
Q Consensus 14 ~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~ 88 (534)
..=++..|++ .-++||.++++.+++|+.++.... ....+.......++|+.+.+.|| |+++||.
T Consensus 15 ~~~~~~~M~~--~~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~ 83 (403)
T 3p4t_A 15 QTQGPGSMSI--WTTAEREALRKTVRAFAEREVLPH---------AHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGS 83 (403)
T ss_dssp --------CT--TSSHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCC
T ss_pred hccCCCCCCC--CCCHHHHHHHHHHHHHHHHhCchh---------HHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCC
Confidence 3445666765 445799999999999998753211 11122222344678999999997 7899987
Q ss_pred Hhhhc------------CCcc---hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEE
Q 009460 89 LRSSV------------DEPA---FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTA 153 (534)
Q Consensus 89 ~~~~~------------~~~~---~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA 153 (534)
+.++. +.+. ++.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|
T Consensus 84 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A 163 (403)
T 3p4t_A 84 GGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRA 163 (403)
T ss_dssp BCCTHHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEE
T ss_pred CCCHHHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEE
Confidence 75542 2233 34456557778899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCccc
Q 009460 154 TFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233 (534)
Q Consensus 154 ~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~ 233 (534)
+++ +|+|+|| |+|+|++| +..||+++|+|+++.+ +..|+++|+|| .+.|||++.+.|+++|
T Consensus 164 ~~~--~~g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~~~-~~~g~~~flV~-------~~~pGv~v~~~~~~~G--- 224 (403)
T 3p4t_A 164 DLD--GDHYVIN-----GAKTYITS-GVRADYVVTAARTGGP-GAGGVSLIVVD-------KGTPGFEVTRKLDKMG--- 224 (403)
T ss_dssp EEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEECSSS-SGGGEEEEEEE-------TTCTTEEEEEECCBSS---
T ss_pred EEe--CCEEEEE-----EEEEEecC-CcccCEEEEEEEeCCC-CCCceEEEEEe-------CCCCCeEecCCCCccc---
Confidence 999 8899999 99999999 8999999999998754 45789999999 7889999999999999
Q ss_pred CCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009460 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 313 (534)
Q Consensus 234 ~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qf 313 (534)
++++++++|.||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+||
T Consensus 225 ~~~~~~~~v~fddv~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~f 292 (403)
T 3p4t_A 225 WRSSDTAELSYTDVRVPVANLVGS------ENTGFA------QIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTF 292 (403)
T ss_dssp CTTSCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred CCCCCeeEEEEcceEecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 999999999999999999999984 555554 56677888999999999999999999999999999999
Q ss_pred CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHH
Q 009460 314 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIE 393 (534)
Q Consensus 314 g~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~ 393 (534)
|+ ||++||.+|++|++|.+.+++++++++++++.+++ +. +.....++++|+++++.+.++++
T Consensus 293 g~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~----~~~~~~~~~aK~~a~~~a~~v~~ 354 (403)
T 3p4t_A 293 GR-------PLISRQAVQNTLAGMARRIDVARVYTRHVVERQLA-------GE----TNLIAEVCFAKNTAVEAGEWVAN 354 (403)
T ss_dssp TE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC----CCchhHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999887752 11 11256689999999999999999
Q ss_pred HHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHH
Q 009460 394 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 438 (534)
Q Consensus 394 ~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 438 (534)
.|+|+|||+||+++++++++|||++...+++|++++++.++++.+
T Consensus 355 ~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 399 (403)
T 3p4t_A 355 QAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399 (403)
T ss_dssp HHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999987
No 14
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=6.1e-56 Score=466.78 Aligned_cols=353 Identities=18% Similarity=0.215 Sum_probs=306.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (534)
-++||.++++.+++|+.++.... ....+.......++|+.+.++|| |+++||.+.++.+
T Consensus 29 ~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ee 99 (403)
T 3r7k_A 29 TTPERRALSQMARSFVEREIAPK---------LAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEA 99 (403)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChh---------HHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHH
Confidence 35799999999999998653211 11122222334678999999997 7889887654321
Q ss_pred -----Cc-c--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 009460 95 -----EP-A--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (534)
Q Consensus 95 -----~~-~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLnt 166 (534)
.+ . ++.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 100 la~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln- 176 (403)
T 3r7k_A 100 ILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVRE--GDTYVVN- 176 (403)
T ss_dssp HHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEC--SSEEEEE-
T ss_pred HHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEE--CCEEEEE-
Confidence 12 1 34345567788899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCc
Q 009460 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (534)
Q Consensus 167 p~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~ 246 (534)
|+|+|++| +..||+++|+|+++.+ ++.|+++|+|| .+.|||++.+.++++| ++++++++|.|||
T Consensus 177 ----G~K~~vs~-a~~Ad~~~v~a~~~~~-~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~ 240 (403)
T 3r7k_A 177 ----GAKTFITS-GVRADFVTTAVRTGGP-GYGGVSLLVID-------KNSPGFEVSRRLDKMG---WRCSDTAELSFVD 240 (403)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEECSSS-SGGGEEEEEEE-------TTCTTEEEEEECCBSS---CTTSCEEEEEEEE
T ss_pred ----EEEEcccC-CccCCEEEEEEEcCCC-CCCceEEEEEe-------CCCCCeEecCcccccC---CCCCCceEEEEee
Confidence 99999999 8999999999998755 55789999999 7889999999999999 9999999999999
Q ss_pred cccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccc
Q 009460 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (534)
Q Consensus 247 vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~ 326 (534)
|+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 241 v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 301 (403)
T 3r7k_A 241 VRVPADNLVGA------ENSGFL------QIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGR-------PLTG 301 (403)
T ss_dssp EEEEGGGEESS------TTCHHH------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCC-------chhh
Confidence 99999999984 555444 5566788899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 009460 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (534)
Q Consensus 327 ~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~ 406 (534)
||.+||+|++|.+.+++++++++++++.+++ +. +....++++|+++++.+.++++.|+|+|||+||++
T Consensus 302 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~G~~~ 369 (403)
T 3r7k_A 302 RQIIRHKLAEMARQVDVACTYTRAVMQRWLA-------GE-----DVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMR 369 (403)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEecC
Confidence 9999999999999999999999999887762 11 23456899999999999999999999999999999
Q ss_pred cCChhHHhhhhcccccccccHHHHHHHHHHHH
Q 009460 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFL 438 (534)
Q Consensus 407 ~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 438 (534)
+++++++|||++...+++|++++++..|++.+
T Consensus 370 ~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 370 ESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp TSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876
No 15
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=9.2e-56 Score=460.63 Aligned_cols=350 Identities=21% Similarity=0.246 Sum_probs=301.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC--------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (534)
++||.++++.+++|+.++.. + .....+.......++|+.+.+.|| |+++||.+.++.+
T Consensus 4 ~~e~~~l~~~~r~~~~~~~~----~-----~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel 74 (372)
T 2dvl_A 4 TQEQRLVLDAVRRVAREVLY----P-----LAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEEL 74 (372)
T ss_dssp CHHHHHHHHHHHHHHHHTHH----H-----HHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCc----h-----hHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHH
Confidence 57899999999999976421 0 011111111234568999999887 7888887654321
Q ss_pred ----Ccc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 95 ----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 95 ----~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
.+. .+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 149 (372)
T 2dvl_A 75 AAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRV--KGGFVLN--- 149 (372)
T ss_dssp HHHCHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEE--TTEEEEE---
T ss_pred HhcCcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEE--CCEEEEE---
Confidence 122 23344346778899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
|+|+|++| +..||+++|+|+++. |+++|+|| .+.|||++.+.|+++| +++++++.|.||||+
T Consensus 150 --G~K~~~s~-~~~Ad~~~v~a~~~~-----g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~ 211 (372)
T 2dvl_A 150 --GVKSWITS-AGHAHLYVVMARTEK-----GISAFLVE-------KGTPGLSFGRPEEKMG---LHAAHTAEVRLEEVF 211 (372)
T ss_dssp --EEEEEEET-TTTCSEEEEEEEETT-----EEEEEEEE-------TTCTTEEECCCCCCSS---CTTSCEEEEEEEEEE
T ss_pred --eEEEeecC-CCcCCEEEEEEEeCC-----CcEEEEEe-------CCCCCeEecCcccccc---cCcCCeeEEEECcEE
Confidence 99999999 899999999999752 78999999 7899999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 212 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q 272 (372)
T 2dvl_A 212 VPEENLLGE------EGRGLA------YALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGK-------KLKEHQ 272 (372)
T ss_dssp EEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSH
T ss_pred eCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC-------chhhhH
Confidence 999999984 455544 5566788899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+|++|++|.+.+++++++++++++.+++ +. +....++++|+++++.+.++++.|+|+|||+||++++
T Consensus 273 ~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~ 340 (372)
T 2dvl_A 273 AIAFKIADMHVKIAAARALVLEAARKKDR-------GE-----RFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDY 340 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhhcCeecCCCC
Confidence 99999999999999999999999887651 11 2355689999999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++|||++...+++|++++++.+|++.+++
T Consensus 341 ~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 372 (372)
T 2dvl_A 341 RVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372 (372)
T ss_dssp SHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998863
No 16
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.6e-55 Score=459.25 Aligned_cols=355 Identities=22% Similarity=0.256 Sum_probs=305.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhc-------
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV------- 93 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~------- 93 (534)
.-++||.++++++++|+.++.... ....+.......++|+.+.+.|| |+++||.+.++.
T Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 79 (385)
T 2pg0_A 9 YLREEHHMFRAAFRKFLEKEAYPH---------YNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINE 79 (385)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchh---------HHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHH
Confidence 346899999999999997643211 11112222234578999999997 788888664432
Q ss_pred -----C-CcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009460 94 -----D-EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (534)
Q Consensus 94 -----~-~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp 167 (534)
+ .+.++.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 80 ela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 155 (385)
T 2pg0_A 80 ELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKD--GDYYIVN-- 155 (385)
T ss_dssp HHHHHCGGGHHHHHHHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHHhhCCchHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEc--CCEEEEE--
Confidence 2 22333346667888899999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEeccC--CCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeC
Q 009460 168 TLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFE 245 (534)
Q Consensus 168 ~~~G~K~~v~~la~~A~~~lV~Ar~~~~--~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd 245 (534)
|+|+|++| +..||+++|+|+++.+ +++.|+++|+|| .+.|||++.+.|+++| +++++++.|.||
T Consensus 156 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~fd 221 (385)
T 2pg0_A 156 ---GQKTFITN-GIHADLIVVACKTDPQAKPPHRGISLLVVE-------RDTPGFTRGRKLEKVG---LHAQDTAELFFQ 221 (385)
T ss_dssp ---EEEEEETT-TTTCSEEEEEEESCTTCSSGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCCEEEEEE
T ss_pred ---eEEecccC-CcccCEEEEEEEeCCccCCCCCceEEEEEe-------CCCCCeEecCCccccc---cCCCceEEEEEc
Confidence 99999999 8999999999998644 345689999999 7889999999999999 999999999999
Q ss_pred ccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccccc
Q 009460 246 HVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (534)
Q Consensus 246 ~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~ 325 (534)
||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||+
T Consensus 222 ~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~ 282 (385)
T 2pg0_A 222 DAKVPAYNLLGE------EGKGFY------YLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGK-------RVS 282 (385)
T ss_dssp EEEEEGGGEESC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGG
T ss_pred ceEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC-------ccc
Confidence 999999999984 555554 5566778899999999999999999999999999999999 999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 009460 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (534)
Q Consensus 326 ~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~ 405 (534)
+||.+|++|++|.+.+++++++++++++.+++ + .+....++++|+++++.+.++++.|+|+|||+||+
T Consensus 283 ~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~-------g-----~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~g~~ 350 (385)
T 2pg0_A 283 EFQTVQFRLAEMATEIALGRTFVDRVIEEHMA-------G-----KQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYM 350 (385)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGB
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccC
Confidence 99999999999999999999999999887752 1 12456789999999999999999999999999999
Q ss_pred ccCChhHHhhhhcccccccccHHHHHHHHHHHH
Q 009460 406 CSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 438 (534)
Q Consensus 406 ~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 438 (534)
++++++++|||++...+++|++++++..+++.+
T Consensus 351 ~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l 383 (385)
T 2pg0_A 351 EEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383 (385)
T ss_dssp TTSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred CCCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 17
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.6e-55 Score=459.44 Aligned_cols=356 Identities=21% Similarity=0.232 Sum_probs=305.1
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-----
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~----- 95 (534)
.-++||.++++++++|+.++.. + .....+.......++|+.+.+.|| |+++||.+.+..+.
T Consensus 18 ~~~~e~~~~~~~~r~~~~~~~~----~-----~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~e 88 (393)
T 1rx0_A 18 GLNEEQKEFQKVAFDFAAREMA----P-----NMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFE 88 (393)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC----c-----cHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHH
Confidence 3468999999999999986431 0 011122111234578999999997 68888876543211
Q ss_pred -------cch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 009460 96 -------PAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (534)
Q Consensus 96 -------~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLnt 166 (534)
+.+ +..| .++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 89 ela~~~~~~~~~~~~~-~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln- 164 (393)
T 1rx0_A 89 ALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQ--GDHYILN- 164 (393)
T ss_dssp HHHTTCHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE-
T ss_pred HHHHhCcchhHHHHHh-HHHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEc--CCEEEEE-
Confidence 211 2233 36677889999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCc
Q 009460 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (534)
Q Consensus 167 p~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~ 246 (534)
|+|+|++| +..||+++|+|++.. +++.|+++|+|| .+.|||++.+.+.++| +++.+++.|.|||
T Consensus 165 ----G~K~~is~-a~~Ad~~~v~a~~~~-~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~fd~ 228 (393)
T 1rx0_A 165 ----GSKAFISG-AGESDIYVVMCRTGG-PGPKGISCIVVE-------KGTPGLSFGKKEKKVG---WNSQPTRAVIFED 228 (393)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEESSS-SSGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEEE
T ss_pred ----eEEEeecC-CccCCEEEEEEEcCC-CCCCceEEEEEe-------CCCCCeEecCcccccc---cCCCCceEEEEcC
Confidence 99999999 899999999999864 345689999999 7899999999999999 9999999999999
Q ss_pred cccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccc
Q 009460 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (534)
Q Consensus 247 vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~ 326 (534)
|+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 229 v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~ 289 (393)
T 1rx0_A 229 CAVPVANRIGS------EGQGFL------IAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGE-------PLAS 289 (393)
T ss_dssp EEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred eEeCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------chhh
Confidence 99999999984 555544 4556778899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 009460 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (534)
Q Consensus 327 ~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~ 406 (534)
||.+|++|++|.+.+++++++++++++.+++ +. ++....++++|+++++.+.++++.|+|+|||+||++
T Consensus 290 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~ 358 (393)
T 1rx0_A 290 NQYLQFTLADMATRLVAARLMVRNAAVALQE-------ER----KDAVALCSMAKLFATDECFAICNQALQMHGGYGYLK 358 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 9999999999999999999999999887752 11 235667899999999999999999999999999999
Q ss_pred cCChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 407 ~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++++|||++...+++|++++++..|++.+|+
T Consensus 359 ~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 392 (393)
T 1rx0_A 359 DYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392 (393)
T ss_dssp TSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHhccCceecCChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999875
No 18
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=3.2e-55 Score=463.08 Aligned_cols=366 Identities=18% Similarity=0.224 Sum_probs=306.2
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHH------------------HHHHHHHHHHHHcCC
Q 009460 20 EMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTL------------------RKAAYAWKRIIELRL 81 (534)
Q Consensus 20 ~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~g~ 81 (534)
.|++ .-++||.++++++++|+.++.. + .....+... ....++|+.+.+.||
T Consensus 4 ~M~~--~~~~~~~~l~~~~r~~~~~~~~-p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~ 72 (415)
T 4hr3_A 4 SMDF--APSARAAELIAAVREFIDAEVM-P--------VERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGL 72 (415)
T ss_dssp ---C--CCCHHHHHHHHHHHHHHHHTHH-H--------HHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTC
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHhCC-c--------cHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCC
Confidence 3554 4468999999999999987621 0 011111111 134678999999997
Q ss_pred -----CHHHHHHHhhhcC---------C----cchhhhhh--hchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCC
Q 009460 82 -----SEEEASMLRSSVD---------E----PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG 141 (534)
Q Consensus 82 -----~~~~gg~~~~~~~---------~----~~~~~~~~--~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~ 141 (534)
|+++||.+.++.+ . +.++..+. ..+...|..+|+++||++|||++++|++++|+++|||+
T Consensus 73 ~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~ 152 (415)
T 4hr3_A 73 WNLFLPDPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPD 152 (415)
T ss_dssp SSTTCCCTTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTT
T ss_pred cCcCCCHHHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCC
Confidence 7888887655421 1 11121111 12336789999999999999999999999999999999
Q ss_pred -CCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCC--ccEEEEEEEeccCC-CCCceEEEEEEeccCCCCCCC
Q 009460 142 -HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPL 217 (534)
Q Consensus 142 -~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~--A~~~lV~Ar~~~~~-~~~G~~~flV~ir~~~~~~~~ 217 (534)
+|||+..++|+|+++ +|+|+|| |+|+||+| +.+ ||+++|+|+++.++ +..|+++|+|| .+.
T Consensus 153 ~~gsd~~~~~t~A~~~--g~g~~ln-----G~K~~is~-a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~-------~~~ 217 (415)
T 4hr3_A 153 VASSDATNMAATAVVE--GDEVVIN-----GRKWWSTG-VGHPDCKVIIFMGLTDPNAHRYARHSMVLVP-------MDT 217 (415)
T ss_dssp SCTTSGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTSTTEEEEEEEEECCTTSCTTSSEEEEEEE-------TTS
T ss_pred CCCCchhhCeeEEEEE--CCEEEEe-----eEEeeECC-CCCCCCCEEEEEEEeCCCCCCCCceEEEEEE-------cCC
Confidence 999999999999998 8999999 99999999 866 99999999987543 44689999999 889
Q ss_pred CCeEEeeCCCccCcccCCCCC--cceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHH
Q 009460 218 PGITIGDIGMKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCA 295 (534)
Q Consensus 218 pGv~i~~~~~k~G~~~~~~~~--~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~ 295 (534)
|||++.+.++++| +++++ +++|.||||+||.+++|+. .|.++. .....+..+|+.+++.++|+
T Consensus 218 pGv~v~~~~~~~g---~r~~~~~~~~v~fddv~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~ 282 (415)
T 4hr3_A 218 PGITVERMLPTMG---FYDEPGGHGVVSFDNVRLPADAFIAG------PGKGFE------IAQGRLGPGRVHHAMRLIGL 282 (415)
T ss_dssp TTEEEEEECCBTT---BCCTTTCEEEEEEEEEEEEGGGBSSC------TTCHHH------HHHHHCSHHHHHHHHHHHHH
T ss_pred CceEecCCCCccc---cCCCCCCeeEEEEccEEECHHHcCCC------CCchHH------HHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999 88887 9999999999999999984 555554 55566778999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHH
Q 009460 296 LSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHA 375 (534)
Q Consensus 296 ~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (534)
++++++.+++|+++|+|||+ ||++||.+|++|++|.+.+++++++++++++.+++. . ..+...
T Consensus 283 a~~al~~a~~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~-------~---~~~~~~ 345 (415)
T 4hr3_A 283 AEVALEHACRRGLDRTAFGK-------PLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTV-------G---IMGALS 345 (415)
T ss_dssp HHHHHHHHHHHHHHCEETTE-------EGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------C---GGGCHH
T ss_pred HHHHHHHHHHHHhcCccCCC-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c---CCchHH
Confidence 99999999999999999999 999999999999999999999999999998877631 0 123456
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHH
Q 009460 376 CTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 443 (534)
Q Consensus 376 ~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~ 443 (534)
.++++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++.++++.+|+.|+
T Consensus 346 ~~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l~~~~ 413 (415)
T 4hr3_A 346 AVSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAKYA 413 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999999998764
No 19
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=1.7e-55 Score=461.03 Aligned_cols=353 Identities=21% Similarity=0.221 Sum_probs=296.3
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (534)
-++|+.++++.+++|+.++.... ....+.......++|+.+.+.|| |+++||.+.++.+
T Consensus 16 ~~~~~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~ee 86 (387)
T 3nf4_A 16 PSQEAAELIELTREIADKVLDPI---------VDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEE 86 (387)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCcc---------HHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHH
Confidence 35799999999999998643211 11122222334568999999997 7888887654321
Q ss_pred -----Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009460 95 -----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (534)
Q Consensus 95 -----~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp 167 (534)
.+.+ +..|. ++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 87 l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-- 161 (387)
T 3nf4_A 87 IAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPT--DGGYVIN-- 161 (387)
T ss_dssp HHTTCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHHhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEe--CCEEEEE--
Confidence 1222 23343 6677899999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcc
Q 009460 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (534)
Q Consensus 168 ~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~v 247 (534)
|+|+|++| +..||+++|+|++. ++..|+++|+|| .+.|||++.+.++++| +++++++.|.||||
T Consensus 162 ---G~K~~~s~-~~~Ad~~~v~a~~~--~~~~g~~~flV~-------~~~pGv~~~~~~~~~G---~~~~~~~~v~fd~v 225 (387)
T 3nf4_A 162 ---GSKSWITH-GGKADFYTLFARTG--EGSRGVSCFLVP-------ADQPGLSFGKPEEKMG---LHAVPTTSAFYDNA 225 (387)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECC----CCCEEEEEEE-------TTCTTEEECCCCCBSS---CCSSCEEEEEEEEE
T ss_pred ---eEEecccC-CcccCEEEEEEEeC--CCCCceEEEEEE-------CCCCCeEecCcccccc---cCCCCeeEEEEeeE
Confidence 99999999 89999999999986 345689999999 7889999999999999 99999999999999
Q ss_pred ccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccch
Q 009460 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (534)
Q Consensus 248 rVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~ 327 (534)
+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 226 ~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~ 286 (387)
T 3nf4_A 226 RIDADRRIGE------EGQGLQ------IAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGR-------KIIDH 286 (387)
T ss_dssp EEEGGGEESS------TTCHHH------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CTTTC
T ss_pred EecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCC-------chhhh
Confidence 9999999984 555554 5566788899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 009460 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (534)
Q Consensus 328 q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~ 407 (534)
|.+||+|+++.+.+++++.+++++++.+++ + .+....++++|+++++.+.++++.|+|+|||+||+++
T Consensus 287 q~v~~~la~~~~~~~aar~~~~~aa~~~~~-------~-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~G~~~~ 354 (387)
T 3nf4_A 287 QGLGFLLADMAAAVATARATYLDAARRRDQ-------G-----RPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRD 354 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcHhhcCC
Confidence 999999999999999999999999877752 1 1234568899999999999999999999999999999
Q ss_pred CChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 408 ~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
++++++|||++...+++|++++++..|++.+++
T Consensus 355 ~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~~ 387 (387)
T 3nf4_A 355 YRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387 (387)
T ss_dssp SSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred CcHHHHHhHhhcCeeecChHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998764
No 20
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=7.5e-56 Score=465.04 Aligned_cols=360 Identities=21% Similarity=0.206 Sum_probs=301.7
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC
Q 009460 20 EMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD 94 (534)
Q Consensus 20 ~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~ 94 (534)
.|++ .-++||.++++++++|+.++... .....+.......++|+.+.+.|| |+++||.+.++.+
T Consensus 14 ~m~~--~~~~e~~~l~~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~ 82 (396)
T 3ii9_A 14 LLDQ--QLADDERMVRDAAHAYAQGKLAP---------RVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVS 82 (396)
T ss_dssp CGGG--GSCHHHHHHHHHHHHHCCCCCHH---------HHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHH
T ss_pred ccCC--CCCHHHHHHHHHHHHHHHHhCCh---------hHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHH
Confidence 3554 44689999999999998664310 111112222334678999999997 7889887755421
Q ss_pred ------------Ccc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCC
Q 009460 95 ------------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (534)
Q Consensus 95 ------------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~ 160 (534)
.+. .+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|
T Consensus 83 ~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~ 160 (396)
T 3ii9_A 83 YGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKV--PG 160 (396)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEE--TT
T ss_pred HHHHHHHHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEe--CC
Confidence 122 13345556677899999999999999999999999999999999999999999999998 89
Q ss_pred eEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcc
Q 009460 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (534)
Q Consensus 161 ~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~ 240 (534)
+|+|| |+|.|++| +..||+++|+|+++.+ +..|+++|+|| .+.|||++.+.++++| +++++++
T Consensus 161 g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~~~-g~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~ 223 (396)
T 3ii9_A 161 GYSLS-----GSKMWITN-SPIADVFVVWAKLDED-GRDEIRGFILE-------KGCKGLSAPAIHGKVG---LRASITG 223 (396)
T ss_dssp EEEEE-----EEEEEEET-GGGCSEEEEEEEEEET-TEEEEEEEEEE-------TTCTTEECCBCCCCSS---CTTSCEE
T ss_pred EEEEE-----EEEEeECC-CccCCEEEEEEEecCC-CCCceEEEEEe-------cCCCCeEecccccccc---CCcCCee
Confidence 99999 99999999 8999999999998733 34579999999 7889999999999999 9999999
Q ss_pred eeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC
Q 009460 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 320 (534)
Q Consensus 241 ~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~ 320 (534)
.|.||||+||.+++|+. +.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 224 ~v~fddv~Vp~~~~l~~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~----- 285 (396)
T 3ii9_A 224 EIVLDEAFVPEENILPH-------VKGLR------GPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGR----- 285 (396)
T ss_dssp EEEEEEEEEEGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-----
T ss_pred EEEEccEEECHHHccCC-------ChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCC-----
Confidence 99999999999999973 33333 5566788899999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 009460 321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (534)
Q Consensus 321 e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~G 400 (534)
||++||.+||+|++|.+.+++++++++++++.+++ + .+....++++|.++++.+.++++.|+|+||
T Consensus 286 --~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~G 351 (396)
T 3ii9_A 286 --PLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDE-------G-----TAAVEITSIMKRNSCGKALDIARLARDMLG 351 (396)
T ss_dssp --EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999887763 1 123456889999999999999999999999
Q ss_pred cccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 401 G~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
|+||+++++++++|||++...+++|++++++..|++.+++.
T Consensus 352 g~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llgl 392 (396)
T 3ii9_A 352 GNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGI 392 (396)
T ss_dssp SCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHSC
T ss_pred cccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999853
No 21
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=4.8e-55 Score=463.79 Aligned_cols=352 Identities=21% Similarity=0.272 Sum_probs=300.5
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC------
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------ 94 (534)
.-++||.++++++++|++++.... ..+ .........++|+.+.++|| | ++||.+.++..
T Consensus 54 ~l~~e~~~l~~~~r~f~~~~~~p~--------~~~-~~~~~~~p~~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~e 123 (436)
T 2ix5_A 54 LLTPEEQAIRKKVRECMEKEVAPI--------MTE-YWEKAEFPFHITPKLGAMGVAGGSIK-GYGCPGLSITANAIATA 123 (436)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTHHH--------HHH-HHHHTCCCGGGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCChh--------hHH-HHhcCCCCHHHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHH
Confidence 346899999999999997642100 011 11111233568999999997 5 77876544321
Q ss_pred ------Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 009460 95 ------EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (534)
Q Consensus 95 ------~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLnt 166 (534)
.+.+ +.+|..++...|..+|+++||++|||++++|++++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 124 ela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~--gdg~vLn- 200 (436)
T 2ix5_A 124 EIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKV--EGGWKIN- 200 (436)
T ss_dssp HHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-
T ss_pred HHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEe--CCEEEEe-
Confidence 1222 3446667788899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCc
Q 009460 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (534)
Q Consensus 167 p~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~ 246 (534)
|+|+||+| +..||+++|+|++..+ .++++|+|| .+.|||++.+.++++| ++++++++|.|||
T Consensus 201 ----G~K~~is~-a~~Ad~~lv~Ar~~~~---~~~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~v~fdd 262 (436)
T 2ix5_A 201 ----GQKRWIGN-STFADLLIIFARNTTT---NQINGFIVK-------KDAPGLKATKIPNKIG---LRMVQNGDILLQN 262 (436)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEEETTT---SSEEEEEEE-------TTCTTEEEEECCCBSS---STTSCEEEEEEEE
T ss_pred ----eeccCCCC-CcccCEEEEEEEECCC---CcEEEEEEE-------CCCCCeEeeccccccC---CCcCCceeEEecc
Confidence 99999999 8999999999998532 368999999 7899999999999999 9999999999999
Q ss_pred cccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccc
Q 009460 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (534)
Q Consensus 247 vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~ 326 (534)
|+||.+++|+. . ..+. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 263 v~VP~~~~lg~------~-~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~-------pi~~ 322 (436)
T 2ix5_A 263 VFVPDEDRLPG------V-NSFQ------DTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGA-------PLAA 322 (436)
T ss_dssp EEEEGGGBCTT------C-SSHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred EEECHHHcCCc------c-ccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------chhh
Confidence 99999999984 2 1222 4556788899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 009460 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (534)
Q Consensus 327 ~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~ 406 (534)
||.+||+|++|.+.+++++++++++++.+++ +. .....++++|+++++.+.++++.|+|+|||+||++
T Consensus 323 ~q~vq~~la~~~~~~~aar~l~~~aa~~~d~-------g~-----~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~ 390 (436)
T 2ix5_A 323 FQLNQQKLVQMLGNVQAMFLMGWRLCKLYET-------GQ-----MTPGQASLGKAWISSKARETASLGRELLGGNGILA 390 (436)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999999999999999887752 11 23455789999999999999999999999999999
Q ss_pred cCChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 407 ~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++++|||++...+++|++++++..+++.+++
T Consensus 391 e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llg 424 (436)
T 2ix5_A 391 DFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTG 424 (436)
T ss_dssp GGSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHhhcceeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999975
No 22
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.4e-54 Score=456.29 Aligned_cols=356 Identities=22% Similarity=0.234 Sum_probs=305.5
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHH-HHHHHHHHHcCCC----HHHHHHHhhhcC
Q 009460 20 EMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKA-AYAWKRIIELRLS----EEEASMLRSSVD 94 (534)
Q Consensus 20 ~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~----~~~gg~~~~~~~ 94 (534)
.|++ .-++||.++++++++|+.++.... ....+...... .++|+.+.+.||. +++||.+.++.+
T Consensus 25 ~m~~--~l~~e~~~l~~~~r~~~~~~~~~~---------~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~ 93 (403)
T 3sf6_A 25 GINA--VLSAEEREIRDTVRSVVQRRIKPH---------IASWYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAVA 93 (403)
T ss_dssp TCGG--GSCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCHHHHHHHHHHTTCSSTTSCSTTCCCCCHHH
T ss_pred ccCC--CCCHHHHHHHHHHHHHHHHhcChh---------HHHHHhcCCCCHHHHHHHHHHCCCCcccchhhCCCCCCHHH
Confidence 4544 446899999999999998743211 11112222234 6789999999873 667776654321
Q ss_pred ------------Ccc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCC
Q 009460 95 ------------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (534)
Q Consensus 95 ------------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~ 160 (534)
.+. .+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|
T Consensus 94 ~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~ 171 (403)
T 3sf6_A 94 YGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRS--GD 171 (403)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEE--TT
T ss_pred HHHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEE--CC
Confidence 122 23456667788899999999999999999999999999999999999999999999998 88
Q ss_pred eEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcc
Q 009460 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (534)
Q Consensus 161 ~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~ 240 (534)
+|+|| |+|+|++| +..||+++|+|+++ .|+++|+|| .+.|||++.+.|+++| +++++++
T Consensus 172 g~~ln-----G~K~~is~-a~~Ad~~~v~ar~~-----~g~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~ 230 (403)
T 3sf6_A 172 DWILT-----GTKMWITN-GSVADVAVVWARTD-----EGIRGFVVP-------TDTPGFTANTIKSKMS---LRASVTS 230 (403)
T ss_dssp EEEEE-----EEEEEEET-GGGCSEEEEEEEET-----TEEEEEEEE-------TTSTTEEEEECCSCSS---CTTSCEE
T ss_pred EEEEE-----EEEEeecC-CcccCEEEEEEEeC-----CceEEEEEE-------CCCCCeEecCCCCccC---CCCCcee
Confidence 99999 99999999 89999999999975 379999999 7899999999999999 9999999
Q ss_pred eeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC
Q 009460 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 320 (534)
Q Consensus 241 ~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~ 320 (534)
.|.||||+||.+++|+. +.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 231 ~v~fd~v~Vp~~~~lg~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~----- 292 (403)
T 3sf6_A 231 ELVLDGVRLPDSARLPG-------ATSLG------APLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDR----- 292 (403)
T ss_dssp EEEEEEEEEEGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-----
T ss_pred EEEEccEEEcHHHccCC-------ChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC-----
Confidence 99999999999999983 33333 5567788899999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 009460 321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (534)
Q Consensus 321 e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~G 400 (534)
||++||.+||+|++|.+.+++++.+++++++.+++ +. +....++++|+++++.+.++++.|+|+||
T Consensus 293 --pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~G 358 (403)
T 3sf6_A 293 --PIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDA-------GE-----LAPEQVSLGKLNNVREAIEIARTARTVLG 358 (403)
T ss_dssp --EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999887763 11 23456889999999999999999999999
Q ss_pred cccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 401 G~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
|+||+++++++++|||++...+++|++++++..+++.+++.
T Consensus 359 g~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llgl 399 (403)
T 3sf6_A 359 ASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGV 399 (403)
T ss_dssp GGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred CeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999853
No 23
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-54 Score=454.19 Aligned_cols=351 Identities=21% Similarity=0.235 Sum_probs=296.9
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (534)
-++||.++++++++|+.++... .....+........+|+.+.+.|| |+++||.+.++.+
T Consensus 11 ~~~~~~~l~~~~r~~~~~~~~~---------~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 81 (385)
T 2eba_A 11 LTPEEKEVQKAARRFLEKEALP---------HIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYE 81 (385)
T ss_dssp SCHHHHHHHHHHHHHHHHHTHH---------HHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCc---------cHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHH
Confidence 3578999999999999753210 001111111123468999999987 7888887654321
Q ss_pred -----Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCC-CCCceEEEEeCCCCeEEEec
Q 009460 95 -----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNV-QGLETTATFDPQTDEFVIHS 166 (534)
Q Consensus 95 -----~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~-~~~~ttA~~d~~~~~~vLnt 166 (534)
.+.+ +.+|..++...|..+|+++||++|||++.+|++++|+++|||++|||+ .+++|+|+++ +|+|+||
T Consensus 82 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~--~~g~~ln- 158 (385)
T 2eba_A 82 LERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARRE--GDTWVLN- 158 (385)
T ss_dssp HHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC----CEEEEE-
T ss_pred HHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEe--CCEEEEE-
Confidence 1222 345556677889999999999999999999999999999999999999 9999999988 8899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCc
Q 009460 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (534)
Q Consensus 167 p~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~ 246 (534)
|+|+|++| +..||+++|+|+++ ++ . +++|+|| .+.|||++.+.|+++| ++++++++|.|||
T Consensus 159 ----G~K~~~s~-~~~Ad~~~v~a~~~-~g--~-~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~f~~ 219 (385)
T 2eba_A 159 ----GTKMWITN-GNLAHLAVIWAKDE-GG--E-VLGFLVP-------TDTPGFQAREVKRKMS---LRASVTSELVLEE 219 (385)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEECC-------EEEEEEE-------TTSTTEEEEECCSBSS---SCSSCEEEEEEEE
T ss_pred ----eeeeccCC-CcccCEEEEEEEeC-CC--c-EEEEEEe-------CCCCCeEecccccccc---cccCceeEEEEcc
Confidence 99999999 89999999999975 22 2 8899999 7889999999999999 9999999999999
Q ss_pred cccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccc
Q 009460 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (534)
Q Consensus 247 vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~ 326 (534)
|+||.+++| . .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 220 v~Vp~~~~l-~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 279 (385)
T 2eba_A 220 VRVPESLRL-P------KALGLK------APLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGE-------PLAK 279 (385)
T ss_dssp EEEEGGGBC-T------TCCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSS-------BGGG
T ss_pred EEEcHHHcc-C------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCe-------eHHh
Confidence 999999999 3 344443 4556778899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 009460 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (534)
Q Consensus 327 ~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~ 406 (534)
||.+||+|+++.+.+++++++++++++.+++ +. .....++++|.++++.+.++++.|+|+|||+||++
T Consensus 280 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------g~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~ 347 (385)
T 2eba_A 280 KQLVQAKLAEMLAWHTEGLLLAWRLARLKDE-------GK-----LTPAQVSLAKRQNVWKALQAARMARDILGGSGITL 347 (385)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 9999999999999999999999999887752 11 23456789999999999999999999999999999
Q ss_pred cCChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 407 ~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
+++++++|||++...+++|++++++..+++.+++
T Consensus 348 ~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llg 381 (385)
T 2eba_A 348 EYHAIRHMLNLETVYTYEGTHDVHTLVLGREITG 381 (385)
T ss_dssp TSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred cChHHHHHHhccCceeeCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999875
No 24
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.8e-55 Score=458.78 Aligned_cols=352 Identities=20% Similarity=0.260 Sum_probs=303.3
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHhhhcC-------
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEASMLRSSVD------- 94 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----~~~gg~~~~~~~------- 94 (534)
.-++||.++++++++|+.++... .....+.......++|+.+.+.||. +++||.+.++.+
T Consensus 25 ~l~~e~~~l~~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~ee 95 (399)
T 3swo_A 25 LLDQDERDIAATVRQFVDTRLKP---------NVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACME 95 (399)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTHH---------HHHHHHHHTCCCTTHHHHHHHHTCTTTTSCSTTCCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCh---------hHHHHHhhCCCCHHHHHHHHHCCCCcCChhhhCCCCCCHHHHHHHHHH
Confidence 45689999999999999874210 0111111112335689999988873 667776654321
Q ss_pred -----Ccc--hhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009460 95 -----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (534)
Q Consensus 95 -----~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp 167 (534)
.+. .+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 171 (399)
T 3swo_A 96 LEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRD--GSDWILN-- 171 (399)
T ss_dssp HHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEe--CCEEEEE--
Confidence 122 23456567788999999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcc
Q 009460 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (534)
Q Consensus 168 ~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~v 247 (534)
|+|+|++| +..||+++|+|+++ .|+++|+|| .+.|||++.+.|+++| +++++++.|.||||
T Consensus 172 ---G~K~~vs~-a~~Ad~~~v~a~~~-----~g~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~v~fd~v 232 (399)
T 3swo_A 172 ---GTKMWITN-GNLADVATVWAQTD-----DGIRGFLVP-------TDTPGFTANEIHRKLS---LRASVTSELVLDNV 232 (399)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEBCT-----TSCEEEEEE-------TTSTTEEEEECCCBSS---CCSSCEEEEEEEEE
T ss_pred ---EEEEeECC-CCccCEEEEEEEeC-----CceEEEEEe-------CCCCCeEeecCcCccc---CCCCceeEEEEccE
Confidence 99999999 89999999999974 468999999 7899999999999999 99999999999999
Q ss_pred ccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccch
Q 009460 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (534)
Q Consensus 248 rVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~ 327 (534)
+||.+++|+. |.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 233 ~Vp~~~~lg~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~-------~i~~~ 292 (399)
T 3swo_A 233 RLPASAQLPL-------AEGLS------APLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDK-------PLSNY 292 (399)
T ss_dssp EECGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EEcHHHcCCC-------ChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCc-------chhhC
Confidence 9999999983 33333 5667788999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 009460 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (534)
Q Consensus 328 q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~ 407 (534)
|.+||+|+++.+.+++++++++++++.+++ + .+....++++|+++++.+.++++.|+|+|||+||+++
T Consensus 293 q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~-----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~ 360 (399)
T 3swo_A 293 QLTQEKLANMTVELGKGMLLAIHLGRIKDA-------E-----GVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLE 360 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCC
Confidence 999999999999999999999999887752 1 1245668899999999999999999999999999999
Q ss_pred CChhHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 408 ~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
++++++|||++...+++|++++++..+++.+++.
T Consensus 361 ~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg~ 394 (399)
T 3swo_A 361 YSPLRHANNLESVLTYEGTSEMHLLSIGKALTGK 394 (399)
T ss_dssp STHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHhhcceeecCHHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999999999863
No 25
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.3e-54 Score=454.80 Aligned_cols=377 Identities=18% Similarity=0.210 Sum_probs=301.7
Q ss_pred CCCHHHHHHHHcCChhhHHHHHHHHHHHhcCC-CCCCCcccCCCHH----H-HHHHHHHHHHHHHHHHHHcCCC----HH
Q 009460 15 QFDVDEMKIVWAGSRHAFQVSDRIARLVASDP-AFRKDNRAMLSRK----E-LFKNTLRKAAYAWKRIIELRLS----EE 84 (534)
Q Consensus 15 ~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~-~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~l~~~g~~----~~ 84 (534)
.|+...|++ .-++||.++++++++|++++. +..... ...++. + .+. .......+|+.+.+.||. ++
T Consensus 13 ~~~~~~m~~--~~~~e~~~l~~~~r~f~~~~~~p~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gl~~l~~P~ 88 (428)
T 2wbi_A 13 QIDTTGQLF--VQTRKGQEVLIKVKHFMKQHILPAEKEV-TEFYVQNENSVDKWG-KPLVIDKLKEMAKVEGLWNLFLPA 88 (428)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHTHHHHHHHH-HC----------CCS-CCHHHHHHHHHHHHTTCCSTTCHH
T ss_pred cCCCccCCC--CCCHHHHHHHHHHHHHHHhhCCchhcch-hHHhhhccccccccC-CcccHHHHHHHHHHCCCCeecCCC
Confidence 366777876 446899999999999998763 111000 000000 0 000 002346789999999983 33
Q ss_pred HHHHHhhhc---------CC----cchhhhhh--hchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCC-CCCCCCC
Q 009460 85 EASMLRSSV---------DE----PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQG 148 (534)
Q Consensus 85 ~gg~~~~~~---------~~----~~~~~~~~--~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~-~Gsd~~~ 148 (534)
|.+.+.. .. +.++.++. .++...|..+|+++||++|||++++|++++|+++|||+ +|||+.+
T Consensus 89 --G~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~ 166 (428)
T 2wbi_A 89 --VSGLSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATN 166 (428)
T ss_dssp --HHCCCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGG
T ss_pred --CCCCCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCccc
Confidence 4332221 11 11222221 24566788899999999999999999999999999999 9999999
Q ss_pred CceEEEEeCCCCeEEEecCCCCccccccCCCCCC--ccEEEEEEEeccCC--CCCceEEEEEEeccCCCCCCCCCeEEee
Q 009460 149 LETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGD 224 (534)
Q Consensus 149 ~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~--A~~~lV~Ar~~~~~--~~~G~~~flV~ir~~~~~~~~pGv~i~~ 224 (534)
++|+|+++ +|+|+|| |+|+||+| +.. ||+++|+|+++.++ +..|+++|+|| .+.|||++.+
T Consensus 167 ~~t~A~~~--~~g~~ln-----G~K~~is~-a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~-------~~~pGv~v~~ 231 (428)
T 2wbi_A 167 IECSIQRD--EDSYVIN-----GKKWWSSG-AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVP-------MNTPGVKIIR 231 (428)
T ss_dssp CCCEEEEE--TTEEEEE-----EEEEEEET-TTSTTEEEEEEEEECCCTTSCGGGCEEEEEEE-------TTSTTEEEEE
T ss_pred ceEEEEEe--CCEEEEE-----eEEeccCC-CCCCcCCEEEEEEEeCCccCCCCCceEEEEEE-------CCCCcEEecC
Confidence 99999998 8899999 99999999 877 99999999986542 34689999999 7899999999
Q ss_pred CCCccCcccCCCCC---cceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009460 225 IGMKFGNGAYNTMD---NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVC 301 (534)
Q Consensus 225 ~~~k~G~~~~~~~~---~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~ 301 (534)
.|+++| +++++ +++|.||||+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++
T Consensus 232 ~~~~~G---~~~~~~~~~~~v~fddv~VP~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~ 296 (428)
T 2wbi_A 232 PLSVFG---YTDNFHGGHFEIHFNQVRVPATNLILG------EGRGFE------ISQGRLGPGRIHHCMRTVGLAERALQ 296 (428)
T ss_dssp ECCBTT---BCCGGGCCEEEEEEEEEEEEGGGBCSC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccc---cCCCCCCCeEEEEeCceEECHHHhcCC------ccchHH------HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999 88885 8999999999999999984 455554 55567788999999999999999999
Q ss_pred HHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHH
Q 009460 302 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 381 (534)
Q Consensus 302 ~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK 381 (534)
.+++|+++|+|||+ ||++||.+|++|++|.+.+++++++++++++.+++.- ..+....++++|
T Consensus 297 ~a~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~g----------~~~~~~~~~~aK 359 (428)
T 2wbi_A 297 IMCERATQRIAFKK-------KLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLG----------SAGAKKEIAMIK 359 (428)
T ss_dssp HHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHTHHHHHHHH
T ss_pred HHHHHHhhCcccCC-------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CcchHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999998876410 023456789999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHH
Q 009460 382 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 444 (534)
Q Consensus 382 ~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~ 444 (534)
+++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++.++++.+|+.+++
T Consensus 360 ~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~~ 422 (428)
T 2wbi_A 360 VAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQAK 422 (428)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999998765
No 26
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=5.4e-54 Score=451.10 Aligned_cols=354 Identities=18% Similarity=0.239 Sum_probs=304.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHH-HHHHHHHHHcCC-----CHHHHHHHh--hhcCC--
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKA-AYAWKRIIELRL-----SEEEASMLR--SSVDE-- 95 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~-----~~~~gg~~~--~~~~~-- 95 (534)
.-++||.++++++++|+.++.... ....+...... .++|+.+.+.|| |+++||.+. +....
T Consensus 4 ~~~~~~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~ 74 (397)
T 3mpi_A 4 NLSKELQMLQKEVRNFVNKKIVPF---------ADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMI 74 (397)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCChh---------HHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHH
Confidence 346899999999999998653210 11122222233 578999999997 789998776 54221
Q ss_pred ----------cch--hhhhhhchHH-HHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeE
Q 009460 96 ----------PAF--TDLHWGMFVP-AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEF 162 (534)
Q Consensus 96 ----------~~~--~~~~~~l~~~-~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~ 162 (534)
+.+ +.+| .++.. .|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++ +|+|
T Consensus 75 v~eela~~~~~~~~~~~~~-~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~ 151 (397)
T 3mpi_A 75 VTEEIARGSSALRVQLNME-VLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDK--GDHW 151 (397)
T ss_dssp HHHHHHHHCHHHHHHHHHH-TTTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEEC--SSEE
T ss_pred HHHHHHhhCchHHHHHHHH-HHhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEe--CCEE
Confidence 222 2334 45566 899999999999999999999999999999999999999999999998 8899
Q ss_pred EEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEE-EeccCCCCCCCCCeEEeeCCCccCcccCCCCCcce
Q 009460 163 VIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIV-QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (534)
Q Consensus 163 vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV-~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~ 241 (534)
+|| |+|+|++| +..||+++|+|++..+++..|+.+|+| | .+.|||++ +.++++| +++++++.
T Consensus 152 ~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~~-------~~~~Gv~v-~~~~~~G---~~~~~~~~ 214 (397)
T 3mpi_A 152 LLN-----GSKTWISN-AAQADVLIYYAYTDKAAGSRGLSAFVIEP-------RNFPGIKT-SNLEKLG---SHASPTGE 214 (397)
T ss_dssp EEE-----EEEEEEET-TTTCSSEEEEEESCGGGGGGSEEEEEECT-------TTSTTEEE-EECCCSS---CTTSCEEE
T ss_pred EEE-----EEEEeeCC-CcccCEEEEEEEcCCCCCCCceEEEEEEc-------CCCCCeEe-ccCcccc---CcCCceeE
Confidence 999 99999999 899999999999876555678999999 8 78999999 8899999 99999999
Q ss_pred eeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCc
Q 009460 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (534)
Q Consensus 242 v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e 321 (534)
|.||||+||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 215 v~fddv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~------ 276 (397)
T 3mpi_A 215 LFLDNVKVPKENILGK------PGDGAR------IVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGK------ 276 (397)
T ss_dssp EEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE------
T ss_pred EEEeeEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC------
Confidence 9999999999999984 555554 5667788899999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009460 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (534)
Q Consensus 322 ~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG 401 (534)
||++||.+|++|++|.+.+++++++++++++.+++ +. .+....++++|+++++.+.++++.|+|+|||
T Consensus 277 -~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg 344 (397)
T 3mpi_A 277 -PIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDE-------GR----LNNGLDVAMAKYAAGEAVSKCANYAMRILGA 344 (397)
T ss_dssp -EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----TEEHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred -chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----CccHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999887752 11 2345678999999999999999999999999
Q ss_pred ccccccCChhHHhhhhcccccccccHHHHHHHHH-HHH
Q 009460 402 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA-RFL 438 (534)
Q Consensus 402 ~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia-~~l 438 (534)
+||+++++++++|||++...+++|++++++..|+ +.+
T Consensus 345 ~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l 382 (397)
T 3mpi_A 345 YGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382 (397)
T ss_dssp GGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999 766
No 27
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=2.2e-53 Score=467.04 Aligned_cols=353 Identities=19% Similarity=0.245 Sum_probs=300.7
Q ss_pred HHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC------------
Q 009460 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------------ 95 (534)
Q Consensus 33 ~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~------------ 95 (534)
++++.+++|+.+... + ...+.......++|+.+.+.|| |+++||.+.+....
T Consensus 56 ~l~~~~~~~~~~~~~----~-------~~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~ 124 (607)
T 2uxw_A 56 ELVEPVSRFFEEVND----P-------AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDL 124 (607)
T ss_dssp HHHHHHHHHHHHTCC----H-------HHHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhhcC----H-------HHhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHccc
Confidence 488999999987531 0 1111111233578999999997 68898876543211
Q ss_pred c--chhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccc
Q 009460 96 P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173 (534)
Q Consensus 96 ~--~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K 173 (534)
+ ..+..|..++..+|..+||++||++|||++++|+.++|+++|||++|||+.+++|+|++++++++|+|| |+|
T Consensus 125 s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~Ln-----G~K 199 (607)
T 2uxw_A 125 GVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLN-----GSK 199 (607)
T ss_dssp HHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEE-----EEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEE-----eEE
Confidence 1 123344445567888999999999999999999999999999999999999999999998667799999 999
Q ss_pred cccCCCCCCccEEEEEEEeccCC-----CCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccc
Q 009460 174 WWPGGLGKVSTHAVVYARLITDG-----QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (534)
Q Consensus 174 ~~v~~la~~A~~~lV~Ar~~~~~-----~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (534)
+||++ +..||+++|+|++...+ +..|+++|+|| ++.|||++++.++|+| +++++++.|.|+||+
T Consensus 200 ~~is~-~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp-------~~~~Gv~v~~~~~~~G---~rg~~t~~v~fddv~ 268 (607)
T 2uxw_A 200 LWISN-GGLADIFTVFAKTPVTDPATGAVKEKITAFVVE-------RGFGGITHGPPEKKMG---IKASNTAEVFFDGVR 268 (607)
T ss_dssp EEEET-TTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEE-------GGGSSEEECCCCCCSS---CTTSCEEEEEEEEEE
T ss_pred EeecC-CcccCEEEEEEEecCCCcccCCCCCceEEEEEe-------CCCCCeEEecCccccC---CCCCCeeEEEeccEE
Confidence 99999 89999999999986421 14689999999 7889999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchH
Q 009460 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (534)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q 328 (534)
||.+++||. .|.++. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 269 VP~~~llG~------~g~G~~------~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~-------pi~~~~ 329 (607)
T 2uxw_A 269 VPSENVLGE------VGSGFK------VAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGE-------KIHNFG 329 (607)
T ss_dssp EEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSH
T ss_pred ecHHHhcCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhcH
Confidence 999999984 566665 6677888899999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+|++|++|.+.+++++++++++++.++. +. ++....++++|+++++.+.+++++|+|+|||+||++++
T Consensus 330 ~vq~~La~~~~~~eaaral~~~aa~~~d~-------~~----~~~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~ 398 (607)
T 2uxw_A 330 LIQEKLARMVMLQYVTESMAYMVSANMDQ-------GA----TDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEP 398 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999999999998877652 11 23456789999999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccccHHHHHHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 442 (534)
+++++|||++...+++|+|++++..++...+...
T Consensus 399 ~l~r~~Rda~~~~i~eGt~~i~~~~ia~~glq~~ 432 (607)
T 2uxw_A 399 GVERVLRDLRIFRIFEGTNDILRLFVALQGCMDK 432 (607)
T ss_dssp SHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccceeeCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977665433
No 28
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1e-53 Score=444.22 Aligned_cols=318 Identities=16% Similarity=0.187 Sum_probs=276.2
Q ss_pred HHHHHHHHHHcCC-----CHHHHHHHhhhcC------------Ccchh--hhhhhchHHHHhcCCCHHHHHHHHHHHhcc
Q 009460 69 AAYAWKRIIELRL-----SEEEASMLRSSVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 129 (534)
Q Consensus 69 ~~~~~~~l~~~g~-----~~~~gg~~~~~~~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g 129 (534)
..++|+.+.+.|| |+++||.+.++.+ .+.++ .+|..++...|. +|+++||++|||++.+|
T Consensus 26 ~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~-~g~~~q~~~~l~~~~~G 104 (366)
T 1r2j_A 26 PRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQR-LGDAGQRATFLKELTSG 104 (366)
T ss_dssp CHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHhCC
Confidence 4568999999997 7888887654421 13332 344446777888 99999999999999999
Q ss_pred cceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEec
Q 009460 130 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 209 (534)
Q Consensus 130 ~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir 209 (534)
+ ++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|+++. + |+++|+||
T Consensus 105 ~-~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~--~--g~~~flV~-- 169 (366)
T 1r2j_A 105 K-LAAVGFSERQAGSDLSAMRTRVRLD--GDTAVVD-----GHKVWTTA-AAYADHLVVFGLQED--G--SGAVVVVP-- 169 (366)
T ss_dssp --CEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEETT-TTTCSEEEEEEBCSS--S--CCEEEEEE--
T ss_pred C-eeEEEeCCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEecccC-CcccCEEEEEEEeCC--C--ceEEEEEE--
Confidence 9 9999999999999999999999998 7899999 99999999 899999999999753 2 78999999
Q ss_pred cCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhH-HHHHHHHHHHH
Q 009460 210 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLL-YGTMVYVRQTI 288 (534)
Q Consensus 210 ~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~-~~~l~~~r~~~ 288 (534)
.+.|||++.+.|+++| ++++++++|.||||+||.+++|+. .|.++. .. ...+..+|+.+
T Consensus 170 -----~~~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~------~~~~~~l~~~r~~~ 229 (366)
T 1r2j_A 170 -----ADTPGVRVERVPKPSG---CRAAGHADLHLDQVRVPAGAVLAG------SGASLP------MLVAASLAYGRKSV 229 (366)
T ss_dssp -----TTSTTEEEEECSSCSS---STTSCCEEEEEEEEEEEGGGBCTT------TTSCTT------TTTHHHHHHHHHHH
T ss_pred -----CCCCCeEecCCcCCcc---CCCCCeeEEEEeeEEEcHHHcCCC------CCccHH------HHHHHHhhHHHHHH
Confidence 7889999999999999 999999999999999999999984 455444 44 56778899999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009460 289 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 368 (534)
Q Consensus 289 aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (534)
++.++|+++++++.+++|+++|+|||+ ||++||.+||+|++|.+.+++++++++++++.+++ +.
T Consensus 230 aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~-------g~-- 293 (366)
T 1r2j_A 230 AWGCVGILRACRTAAVAHARTREQFGR-------PLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDE-------GS-- 293 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC--
Confidence 999999999999999999999999999 99999999999999999999999999999877652 10
Q ss_pred CchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 369 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 369 ~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
.+....++++|.++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++..+++.+++
T Consensus 294 --~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lg 363 (366)
T 1r2j_A 294 --PEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALA 363 (366)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTT
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhc
Confidence 1234568999999999999999999999999999999999999999999999999999999999998875
No 29
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=1.9e-53 Score=446.20 Aligned_cols=354 Identities=20% Similarity=0.238 Sum_probs=298.4
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHhhhcC-------
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEASMLRSSVD------- 94 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----~~~gg~~~~~~~------- 94 (534)
.-++||.++++++++|+.++.. + .....+.......++|+.+.+.||. +++||.+.++.+
T Consensus 13 ~~~~e~~~l~~~~r~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~~~GG~g~~~~~~~~~~ee 83 (392)
T 1siq_A 13 QLTTDEILIRDTFRTYCQERLM----P-----RILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARE 83 (392)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcC----c-----chHHHHhhCCCCHHHHHHHHhCCCCcccHHhhCCCCCCHHHHHHHHHH
Confidence 3468999999999999976421 0 0011111112335689999999974 567776544321
Q ss_pred -----Ccch--hhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009460 95 -----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (534)
Q Consensus 95 -----~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp 167 (534)
.+.+ +.+|..++...|..+|+++||++|||++++|++++|+++|||++|||+.+++|+|++++++|+|+||
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~ln-- 161 (392)
T 1siq_A 84 LERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLN-- 161 (392)
T ss_dssp HHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEE--
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEE--
Confidence 1211 2345456677888999999999999999999999999999999999999999999998667899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCcc
Q 009460 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (534)
Q Consensus 168 ~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~v 247 (534)
|+|+|++| +..||+++|+|++.. .++++|+|| .+.|||++.++++++| +++++++.|.||||
T Consensus 162 ---G~K~~vs~-~~~Ad~~~v~a~~~~----g~~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v 223 (392)
T 1siq_A 162 ---GTKTWITN-SPMADLFVVWARCED----GCIRGFLLE-------KGMRGLSAPRIQGKFS---LRASATGMIIMDGV 223 (392)
T ss_dssp ---EEEEEEET-GGGCSEEEEEEEETT----SCEEEEEEE-------TTCTTEECCBCCCCSS---STTSCEEEEEEEEE
T ss_pred ---EEEEeecC-CcccCEEEEEEEECC----CCEEEEEEe-------CCCCCeEecccccccc---ccCCceEEEEEccE
Confidence 99999999 899999999999852 248899999 7889999999999999 99999999999999
Q ss_pred ccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccch
Q 009460 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (534)
Q Consensus 248 rVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~ 327 (534)
+||.+++|+. . .++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 224 ~Vp~~~~lg~------~-~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~ 283 (392)
T 1siq_A 224 EVPEENVLPG------A-SSLG------GPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGV-------PLARN 283 (392)
T ss_dssp EEEGGGBCTT------C-CSSH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EECHHHcCCc------c-cCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCc-------chhhh
Confidence 9999999974 1 2222 4456777899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 009460 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (534)
Q Consensus 328 q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~ 407 (534)
|.+||+|++|.+.+++++++++++++.+++ +. .....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 284 q~vq~~la~~~~~~~~ar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~q~~Gg~g~~~~ 351 (392)
T 1siq_A 284 QLIQKKLADMLTEITLGLHACLQLGRLKDQ-------DK-----AAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDE 351 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC
Confidence 999999999999999999999999887652 11 234467899999999999999999999999999999
Q ss_pred CChhHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009460 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 408 ~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (534)
++++++|||++...+++|++++++..+++.+++
T Consensus 352 ~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llg 384 (392)
T 1siq_A 352 YHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 384 (392)
T ss_dssp GSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred CcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999875
No 30
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=3.4e-52 Score=442.97 Aligned_cols=370 Identities=15% Similarity=0.143 Sum_probs=300.4
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCc-ccCCCHHHHHHHHHHHH--HHHHHHHHHcCC-----CHHHHHHHhhhcCC--
Q 009460 26 AGSRHAFQVSDRIARLVASDPAFRKDN-RAMLSRKELFKNTLRKA--AYAWKRIIELRL-----SEEEASMLRSSVDE-- 95 (534)
Q Consensus 26 ~~~~e~~~lr~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~l~~~g~-----~~~~gg~~~~~~~~-- 95 (534)
.-++||.++++++|+|++++....... ....+... ..+. .++|+.+.++|| |+++||.+.++...
T Consensus 6 ~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~ 80 (438)
T 3mkh_A 6 HLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSP-----LRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAI 80 (438)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCH-----HHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcHHHHHhhcccccc-----CcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHH
Confidence 346899999999999998864211000 00000111 0222 578999999997 78898877554221
Q ss_pred ----------cchhh-hhhhchHHHHhcCCCHHHHHHHHHHHhcc--cceeeEecCCCCCCC-----CCCCCceEEEEeC
Q 009460 96 ----------PAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKM--EIIGCYAQTELGHGS-----NVQGLETTATFDP 157 (534)
Q Consensus 96 ----------~~~~~-~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g--~~~~~~a~tE~~~Gs-----d~~~~~ttA~~d~ 157 (534)
+.++. ....++...|..+|+++ |++|||++++| +.++|+++|||++|| |+.+++|+|+++
T Consensus 81 v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~- 158 (438)
T 3mkh_A 81 LVEECYSVEPSAALTIFATGLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLE- 158 (438)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEE-
T ss_pred HHHHHHhhChhHHHHHHHhhHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEe-
Confidence 12211 12235556778899999 89999999996 689999999999998 589999999998
Q ss_pred CCCeEEEecCCCCccccccCCCCC-----CccEEEEEEEecc------CCCCCceEEEEEEeccCCCCCCCCC-eEEeeC
Q 009460 158 QTDEFVIHSPTLTSSKWWPGGLGK-----VSTHAVVYARLIT------DGQDHGVNGFIVQLRSLEDHSPLPG-ITIGDI 225 (534)
Q Consensus 158 ~~~~~vLntp~~~G~K~~v~~la~-----~A~~~lV~Ar~~~------~~~~~G~~~flV~ir~~~~~~~~pG-v~i~~~ 225 (534)
+|+|+|| |+|+||+| +. .||+++|+|++.. .++..|+++|+||..+.+ ...|| |++.+.
T Consensus 159 -g~g~~ln-----G~K~~is~-a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~--~~~pG~v~v~~~ 229 (438)
T 3mkh_A 159 -GDEWVIN-----GEKMWATN-CAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLD--RNGEGSFEVLRH 229 (438)
T ss_dssp -TTEEEEE-----EEECSCTT-TTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHH--HHCTTSEEEEEC
T ss_pred -CCEEEEE-----eEEEEecC-CCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccc--cCCCCcEEecCc
Confidence 8999999 99999999 65 7999999999853 223468999999932100 01388 999999
Q ss_pred CCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009460 226 GMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATR 305 (534)
Q Consensus 226 ~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~ 305 (534)
|+++| ++++++++|.||||+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++
T Consensus 230 ~~~~G---~r~~~~~~v~fddv~VP~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ 294 (438)
T 3mkh_A 230 VATPG---HTSVSGPHVRYTNVRVPTKNVLCP------AGQGAK------VAFGAFDGSAVLVGAMGVGLMRAAFDAALK 294 (438)
T ss_dssp CCCSS---CTTCCCCEEEEEEEEEEGGGEEEC------TTTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcC---CcCCCceEEEECcEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999984 555554 566778889999999999999999999999
Q ss_pred hhccccccC-CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHH
Q 009460 306 YSAVRRQFG-SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLT 384 (534)
Q Consensus 306 Ya~~R~qfg-~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~ 384 (534)
|+++|+||| + ||++||.+|++|++|.+.+++++++++++++.+++ +. .........++++|+++
T Consensus 295 ya~~R~~~g~~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-~~~~~~~~~~~~aK~~a 359 (438)
T 3mkh_A 295 FAKEDNRGGAV-------PLLERQAFADLLSGVKIQTEAARALTWKAAHAMEN-------GP-GDYDARRELALAAKVFC 359 (438)
T ss_dssp HHHHCCTTCSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CS-SCHHHHHHHHHHHHHHH
T ss_pred HHhhcEeCCCe-------eccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-CcchhHHHHHHHHHHHH
Confidence 999999999 7 99999999999999999999999999999887763 11 11112334577899999
Q ss_pred HHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccH-HHHHHHHHHHHHHH
Q 009460 385 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMKT 441 (534)
Q Consensus 385 t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~-~vl~~~ia~~ll~~ 441 (534)
++.+.++++.|+|+|||+||+++++++++|||++...+++|++ +++++++++.+++.
T Consensus 360 ~e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~~~v~~~~i~r~ll~~ 417 (438)
T 3mkh_A 360 SEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKP 417 (438)
T ss_dssp HHHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSCTTTTHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeecCChHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 99999999999975
No 31
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=8.1e-50 Score=424.73 Aligned_cols=364 Identities=15% Similarity=0.111 Sum_probs=293.3
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCc-ccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhc-------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDN-RAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV------- 93 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~------- 93 (534)
-++|+.++++++++|++++....... .......+.+. ....+|+.+.+.|| |+++||.+.++.
T Consensus 6 ~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~----~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 6 LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQ----ATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHH----TTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCC----ChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 36789999999999998763211000 00001111111 11578999999997 688888765432
Q ss_pred -----CCcchh--hhhhhchHHHHhcCCCHHHHHHHHHHHh--cccceeeEecCCCCCCC-----CCCCCceEEEEeCCC
Q 009460 94 -----DEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAY--KMEIIGCYAQTELGHGS-----NVQGLETTATFDPQT 159 (534)
Q Consensus 94 -----~~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~--~g~~~~~~a~tE~~~Gs-----d~~~~~ttA~~d~~~ 159 (534)
+.+.++ ..| .++...|..+|+++||++|||+++ +|++++|+++|||++|| |+.+++|+|+++ +
T Consensus 82 ela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~--~ 158 (439)
T 2c12_A 82 ELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKV--G 158 (439)
T ss_dssp HHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEE--T
T ss_pred HHHhhChHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEc--C
Confidence 112222 233 355667889999999999999999 69999999999999998 588899999998 8
Q ss_pred CeEEEecCCCCccccccCCCCC-----CccEEEEEEEe-c----cC----CCCCceEEEEEEeccCCCCCCCC------C
Q 009460 160 DEFVIHSPTLTSSKWWPGGLGK-----VSTHAVVYARL-I----TD----GQDHGVNGFIVQLRSLEDHSPLP------G 219 (534)
Q Consensus 160 ~~~vLntp~~~G~K~~v~~la~-----~A~~~lV~Ar~-~----~~----~~~~G~~~flV~ir~~~~~~~~p------G 219 (534)
|+|+|| |+|+||+| +. .||+++|+|++ . ++ ++..|+++|+|| .+.| |
T Consensus 159 ~g~~ln-----G~K~~is~-~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~-------~~~pGv~~~~G 225 (439)
T 2c12_A 159 NEWVIS-----GEKLWPSN-SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVT-------RETIANNKKDA 225 (439)
T ss_dssp TEEEEE-----EEEECCTT-TTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEEC-------HHHHHTSCGGG
T ss_pred CEEEEE-----eEEEeecC-CCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEE-------CCCCcccCCCc
Confidence 899999 99999999 65 89999999998 5 32 344689999999 4456 8
Q ss_pred eEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009460 220 ITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRA 299 (534)
Q Consensus 220 v~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~a 299 (534)
|++.+.++++| ++++++++|.||||+||.+++|+. .|.++.. .....+...|+.+++.++|+++++
T Consensus 226 v~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~~lg~------~~~g~~~-----~~~~~l~~~r~~~aa~~~G~a~~a 291 (439)
T 2c12_A 226 YQILGEPELAG---HITTSGPHTRFTEFHVPHENLLCT------PGLKAQG-----LVETAFAMSAALVGAMAIGTARAA 291 (439)
T ss_dssp EEEEECCCBSS---CTTCCCCEEEEEEEEEEGGGBCSC------TTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeCCcccccc---cCCCCceEEEEccEEecHHHcCCC------CCccHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999984 4443320 234567789999999999999999
Q ss_pred HHHHHHhhcc-ccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 009460 300 VCIATRYSAV-RRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTA 378 (534)
Q Consensus 300 l~~av~Ya~~-R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 378 (534)
++.+++|+++ |+|||+ ||++||.+|++|++|.+.+++++++++++++.++. +. .........++
T Consensus 292 l~~a~~ya~~rr~~~G~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~-~~~~~~~~~~~ 356 (439)
T 2c12_A 292 FEEALVFAKSDTRGGSK-------HIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLED-------EA-LEWKVKLEMAM 356 (439)
T ss_dssp HHHHHHHHHHCCTTSSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------TT-SCHHHHHHHHH
T ss_pred HHHHHHHHhhceeeCCe-------ehhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-ccchhhHHHHH
Confidence 9999999996 788998 99999999999999999999999999999877641 11 11011344688
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccH-HHHHHHHHHHHH
Q 009460 379 GLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLM 439 (534)
Q Consensus 379 ~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~-~vl~~~ia~~ll 439 (534)
++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|++ ++++.++++.+.
T Consensus 357 ~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~G~~~~~~~~~i~~~l~ 418 (439)
T 2c12_A 357 QTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMA 418 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhcceeecCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988 799999987553
No 32
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=3.4e-49 Score=414.19 Aligned_cols=358 Identities=15% Similarity=0.068 Sum_probs=284.8
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHH-hhhcC------
Q 009460 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASML-RSSVD------ 94 (534)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~-~~~~~------ 94 (534)
-++||.++++.+++|+.. +.. +....+.......++|+.+.+.|| |+++||.+ .++.+
T Consensus 9 lt~e~~~~~~~~r~~~~~---~~~-------~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~e 78 (395)
T 3mxl_A 9 LTPAGRTVVDLLAGVIPR---ISA-------EAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALM 78 (395)
T ss_dssp CSHHHHHHHHHHTTTHHH---HHH-------HHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH---Hhh-------chHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHH
Confidence 467999999999999863 111 112222222344678999999887 78898887 54321
Q ss_pred ------Ccchh--hhhhhchHHHH--hcCCCHHHH---HHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCe
Q 009460 95 ------EPAFT--DLHWGMFVPAI--KGQGTDEQH---QKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161 (534)
Q Consensus 95 ------~~~~~--~~~~~l~~~~i--~~~Gt~eq~---~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~ 161 (534)
.+.++ .+|..++...+ ..+|+++|| ++|||++.+|+.++|+++|||++|+ ..++|+ + +|+
T Consensus 79 el~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t~---~--~~g 151 (395)
T 3mxl_A 79 RLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHSD---G--AGG 151 (395)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEEC---S--SSC
T ss_pred HHHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEEe---c--CCE
Confidence 12222 33443444333 356999999 9999999999999999999998763 333332 3 789
Q ss_pred EEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcce
Q 009460 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (534)
Q Consensus 162 ~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~ 241 (534)
|+|| |+|+|++| +..||+++|+|+++.+++..|+++|+|| .+.|||++.+.|+++| ++++++++
T Consensus 152 ~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~ 215 (395)
T 3mxl_A 152 WLLS-----GRKVLVSM-APIATHFFVHAQRRDDDGSVFLAVPVVH-------RDAPGLTVLDNWDGLG---MRASGTLE 215 (395)
T ss_dssp EEEE-----EEEEEETT-GGGCSEECCCEEEECTTSCEEEECCCEE-------TTCTTEEEECCCCBSS---CTTSCCEE
T ss_pred EEEe-----eEEEEecC-ccccCEEEEEEEeCCCCCCCceEEEEEE-------CCCCceEeCCCchhcC---CCCCCcce
Confidence 9999 99999999 8999999999999766666789999999 7889999999999999 99999999
Q ss_pred eeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCc
Q 009460 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (534)
Q Consensus 242 v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e 321 (534)
|.||||+||.+++|+.. +.|.++. .....+...|+.+++.++|+++++++.+++|++ |+
T Consensus 216 v~f~~v~Vp~~~~lg~~----~~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r------ 274 (395)
T 3mxl_A 216 VVFDRCPVRADELLERG----PVGARRD------AVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GR------ 274 (395)
T ss_dssp EEEEEEEECGGGCCEEE----ESSCCCT------THHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TT------
T ss_pred EEEcceEcCHHHhcCCC----CCCccHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CC------
Confidence 99999999999999831 1343333 233345568999999999999999999999998 45
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-chhhHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 009460 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST-LPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (534)
Q Consensus 322 ~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~G 400 (534)
||++||.+|++|++|.+.+++++++++++++.++....... .+... .......++++|.++++.+.++++.|+|+||
T Consensus 275 -~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~-~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~q~~G 352 (395)
T 3mxl_A 275 -GGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVDLS-GDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVG 352 (395)
T ss_dssp -CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999888775332111 11110 1123456788999999999999999999999
Q ss_pred cccccccCChhHHhhhhcccc-cccccHHHHHHHHHHHHHH
Q 009460 401 GHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMK 440 (534)
Q Consensus 401 G~Gy~~~~~l~~~~rd~~~~~-~~eG~~~vl~~~ia~~ll~ 440 (534)
|+||+++++++++|||++... +++|+++++++++++.+|+
T Consensus 353 g~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~Lg 393 (395)
T 3mxl_A 353 GLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQALG 393 (395)
T ss_dssp GGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHHSC
T ss_pred hHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999 9999999999999999874
No 33
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=5.7e-48 Score=410.56 Aligned_cols=367 Identities=13% Similarity=0.069 Sum_probs=287.0
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHH-h
Q 009460 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASML-R 90 (534)
Q Consensus 17 ~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~-~ 90 (534)
++.+|++ .-++|+.++++.+++|+... .. +....+.......++|+.|.+.|| |+++||.+ .
T Consensus 12 ~~~~m~~--~lt~e~~~l~~~~r~~~~~~---~~-------~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~ 79 (439)
T 3m9v_A 12 STTGLYA--PVTPAGRVLLDRLAAHLPRI---RS-------TAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVD 79 (439)
T ss_dssp CCSTTSS--CSSHHHHHHHHHHHTTHHHH---HH-------HHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCC
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHH---hh-------hHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCC
Confidence 4556765 44689999999999998641 10 112222222344678999999887 78998877 4
Q ss_pred hhcC------------Ccch--hhhhhhchHHHH--hcCCCHHH---HHHHHHHHhcccceeeEecCCCCCCCCCCCCce
Q 009460 91 SSVD------------EPAF--TDLHWGMFVPAI--KGQGTDEQ---HQKWLPLAYKMEIIGCYAQTELGHGSNVQGLET 151 (534)
Q Consensus 91 ~~~~------------~~~~--~~~~~~l~~~~i--~~~Gt~eq---~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~t 151 (534)
+..+ .+.+ +.+|..++...+ ..+||++| |++|||++.+|++++|+++|||++ ++..++|
T Consensus 80 ~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t 157 (439)
T 3m9v_A 80 RLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP 157 (439)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE
T ss_pred CHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee
Confidence 4321 1222 233433344333 35699999 999999999999999999999985 3444444
Q ss_pred EEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCc
Q 009460 152 TATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 231 (534)
Q Consensus 152 tA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~ 231 (534)
+ + +|+|+|| |+|+|++| +.+||+++|+|+++.+++.+|+++|+|| .+.|||+|.+.|+++|
T Consensus 158 ~---~--~~g~vln-----G~K~~~s~-a~~Ad~~~v~art~~~~~~~g~~~flVp-------~~~pGv~i~~~~~~~G- 218 (439)
T 3m9v_A 158 D---G--AGGWLLS-----GRKTLVSM-APVGTHFVINARTDGTDGPPRLASPVVT-------RDTPGFTVLDNWDGLG- 218 (439)
T ss_dssp C---S--SSCEEEE-----EEEEEETT-GGGCSEEEECEEECC--CCCCEEEEEEE-------TTCTTEEECCCCCCSS-
T ss_pred c---c--CCEEEEE-----eEEEeecC-ccccCEEEEEEEecCCCCCceeEEEEEE-------CCCCCeEECCCcccCC-
Confidence 3 3 7899999 99999999 8999999999999766666789999999 7889999999999999
Q ss_pred ccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009460 232 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR 311 (534)
Q Consensus 232 ~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~ 311 (534)
++++++++|.||||+||.+++|+.. +.|.++. .....+..+|+.+++.++|+++++++++++|++
T Consensus 219 --~~~~~~~~v~fddv~VP~~~~lg~~----~~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~--- 283 (439)
T 3m9v_A 219 --MRASGTVDIVFDDCPIPADHVLMRD----PVGARND------AVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE--- 283 (439)
T ss_dssp --CTTSCCEEEEEEEEEECGGGEEECC----C--CCCG------GGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH---
T ss_pred --cCCCCceeEEEeeeEcCHHHccCCC----CCCchHH------HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 9999999999999999999999831 1344333 223334558999999999999999999999998
Q ss_pred ccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-chhhHHHHHhHHHHHHHHHHH
Q 009460 312 QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST-LPEAHACTAGLKSLTTTATAD 390 (534)
Q Consensus 312 qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~aK~~~t~~a~~ 390 (534)
++ ||.+||.+|++|+++.+.+++++++++++++.++....... .+... .......++++|+++++.+.+
T Consensus 284 --~r-------~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~-~~~~~~~~~~~~~~~~ak~~a~~~a~~ 353 (439)
T 3m9v_A 284 --RR-------PEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLS-GDMDERGRQMMRHFQCAKLAVNRLAPE 353 (439)
T ss_dssp --TC-------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 44 89999999999999999999999999999887765332110 00000 112345678899999999999
Q ss_pred HHHHHHHHhccccccccCChhHHhhhhcccc-cccccHHHHHHHHHHHHHHH
Q 009460 391 GIEECRKLCGGHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 391 ~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~-~~eG~~~vl~~~ia~~ll~~ 441 (534)
+++.|+|+|||+||+++++++++|||++... +++|+++++++.+++.+|+.
T Consensus 354 v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~~~lg~ 405 (439)
T 3m9v_A 354 IVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGI 405 (439)
T ss_dssp HHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999 99999999999999999864
No 34
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=2.4e-47 Score=402.79 Aligned_cols=353 Identities=11% Similarity=-0.049 Sum_probs=279.9
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC--------
Q 009460 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (534)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (534)
++|+.++++.+++|+.+ +.. .....+.......++|+.+.+.|| |+++||.+.++..
T Consensus 19 ~~~~~~l~~~~r~~~~~---~~~-------~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel 88 (414)
T 2or0_A 19 FQGMGRVLDRIEVVAEE---IRG-------QAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGV 88 (414)
T ss_dssp ----CHHHHHHHHTHHH---HHH-------HHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH---HHH-------hHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999864 111 011112212234568999999887 7889887654422
Q ss_pred ----Ccchh--hhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009460 95 ----EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (534)
Q Consensus 95 ----~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~ 168 (534)
.+.++ ..| .++...|..+|+++||++||| +|+.++|+++| | +|+|+++ +|+|+||
T Consensus 89 a~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~--~~g~~ln--- 149 (414)
T 2or0_A 89 AALDGASGWVTGIV-GVHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPV--DGGYVLK--- 149 (414)
T ss_dssp HHHCHHHHHHHHHH-TTHHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEE--TTEEEEE---
T ss_pred HhhChHHHHHHHHH-HHHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEE--CCeEEEE---
Confidence 13332 233 467788999999999999999 79999999998 4 6899998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEeccCCCCC---ceEEEEEEeccCCCCCCCCCeEEe-eCCCccCcccCCCCCcceeee
Q 009460 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDH---GVNGFIVQLRSLEDHSPLPGITIG-DIGMKFGNGAYNTMDNGVLRF 244 (534)
Q Consensus 169 ~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~---G~~~flV~ir~~~~~~~~pGv~i~-~~~~k~G~~~~~~~~~~~v~f 244 (534)
|+|+|++| +..||+++|+|++..+++.. |+++|+|| .+ ||++. +.|+++| +++++++.|.|
T Consensus 150 --G~K~~is~-a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~-------~~--gv~v~~~~~~~~G---~r~~~~~~v~f 214 (414)
T 2or0_A 150 --GRWSFSSG-TDHCQWAFLGAMVGDGEGGIATPSSLHVILP-------RT--DYQIVEDTWDVIG---LRGTGSKDLIV 214 (414)
T ss_dssp --EEEEEETT-GGGCSEEEEEEEECC-----CCCSEEEEEEE-------GG--GCEEETTCCCBSS---CGGGCCEEEEE
T ss_pred --eeEeccCC-CchhhEEEEEEEecCCCCCcccceeEEEEEE-------hh--hcEEecCCCcccc---CcccCCCcEEE
Confidence 99999999 89999999999986432333 89999999 43 99999 9999999 99999999999
Q ss_pred CccccCccccccccccccC--CC----ceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-CCCC
Q 009460 245 EHVRIPRNQMLMRVSQVTR--EG----KYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF-GSKN 317 (534)
Q Consensus 245 d~vrVP~~~lL~~~~~v~~--~g----~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qf-g~~~ 317 (534)
|||+||.+++|+....++. .| .++. .....+...|+.+++.++|+++++++.+++|+++|+|| |+
T Consensus 215 d~v~VP~~~~lg~~~~~~g~~~g~~~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~-- 286 (414)
T 2or0_A 215 DGAFVPGYRTLNAAKVMDGRAQKEAGRPEPL------FNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQ-- 286 (414)
T ss_dssp EEEEEEGGGEEEHHHHHHSHHHHHHTCSCSG------GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSC--
T ss_pred ccEEecHHHeeccccccccCCCccccCCCcc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--
Confidence 9999999999974211000 11 1111 22335667899999999999999999999999999999 98
Q ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 009460 318 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 397 (534)
Q Consensus 318 ~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q 397 (534)
||++||.+|++|++|.+.+++++++++++++.+++... .+.. ...+....++++|+++++.+.++++.|+|
T Consensus 287 -----~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~---~g~~-~~~~~~~~~~~aK~~a~e~a~~v~~~a~q 357 (414)
T 2or0_A 287 -----KIKEDPYVLSAIGESAAEINASRVSLIETADRFYDKVD---AGKE-ITFEERAIGRRTQIAAAWRAVRAADEIFA 357 (414)
T ss_dssp -----BGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988764321 1221 11245667899999999999999999999
Q ss_pred HhccccccccCChhHHhhhhcccccccc-cHHHHHHHHHHHHHHH
Q 009460 398 LCGGHGYLCSSGLPELFAVYVPACTYEG-DNIVLLLQVARFLMKT 441 (534)
Q Consensus 398 ~~GG~Gy~~~~~l~~~~rd~~~~~~~eG-~~~vl~~~ia~~ll~~ 441 (534)
+|||+||+++++++++|||++...+++| ++++++.++++.+|+.
T Consensus 358 ~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia~~~lg~ 402 (414)
T 2or0_A 358 RAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASALTQLGG 402 (414)
T ss_dssp TSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHHHHHTTC
T ss_pred hhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHHHHHhCC
Confidence 9999999999999999999999999999 9999999999998853
No 35
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=4.4e-46 Score=403.28 Aligned_cols=324 Identities=18% Similarity=0.173 Sum_probs=274.1
Q ss_pred HHHHHHHHHcCC-------CHHHHHHHhhhc----------CCcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccc-
Q 009460 70 AYAWKRIIELRL-------SEEEASMLRSSV----------DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI- 131 (534)
Q Consensus 70 ~~~~~~l~~~g~-------~~~~gg~~~~~~----------~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~- 131 (534)
.++++.+.+.|| |+++||...... ....|..++. .++++|..+| ++||++|||++.+|+.
T Consensus 89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~sge~~ 166 (541)
T 3djl_A 89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLSDRYD 166 (541)
T ss_dssp HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTCSCCC
T ss_pred HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhCCCcc
Confidence 456777888876 245666543321 1234555554 4677888899 9999999999999998
Q ss_pred ------------eeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCC
Q 009460 132 ------------IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDH 199 (534)
Q Consensus 132 ------------~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~ 199 (534)
++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|++ +..||+++|+|+++ .
T Consensus 167 p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~-~g~y~Ln-----G~K~f~S--a~~Ad~~lVlArt~-----~ 233 (541)
T 3djl_A 167 SHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLE-DGSYRLV-----GHKWFFS--VPQSDAHLVLAQTA-----G 233 (541)
T ss_dssp CCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEEE-----EEEEEEE--CTTSSEEEEEEEET-----T
T ss_pred cccccccccccceeEEEeccCCcCCCcccceeEEEEcC-CCeEEEE-----EEEEeec--ccccCEEEEEEEEC-----C
Confidence 88999999999999999999999874 4679999 9999998 58999999999984 5
Q ss_pred ceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHH
Q 009460 200 GVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYG 279 (534)
Q Consensus 200 G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~ 279 (534)
|+++|+||.+.++ ...+||+|.++|+|+| ++++++++|.|+||+ +++||. .|.++. .+..
T Consensus 234 Gis~flVp~~~p~--~~~~Gv~i~~~~~~~G---~rgt~s~~v~fddv~---~~llG~------~g~G~~------~~~~ 293 (541)
T 3djl_A 234 GLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASCEVEFQDAI---GWLLGL------EGEGIR------LILK 293 (541)
T ss_dssp EEEEEEEESBCTT--SCBCSEEEEEECCCSS---CTTSCEEEEEEEEEE---EEEESS------TTCHHH------HTHH
T ss_pred ceEEEEEecCCCC--CCcCCeEEeeccccCC---CcCCceeEEEEccce---eeeeec------CCchHH------HHHH
Confidence 8999999944322 1234999999999999 999999999999994 889984 566655 5667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009460 280 TMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT 359 (534)
Q Consensus 280 ~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~ 359 (534)
.+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||.+|++|+++.+.+++++++++++++.+++.
T Consensus 294 ~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~- 365 (541)
T 3djl_A 294 MGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGN-------PLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRR- 365 (541)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCC-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 888999999999999999999999999999999999 999999999999999999999999999998877631
Q ss_pred HHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHH
Q 009460 360 QRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (534)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (534)
.+.......+..++++|+++++.+.+++++|+|+|||+||+++++++++|||++...+++|++++++..++|.++
T Consensus 366 -----~~~~~~~~~~~~~~~aK~~ase~a~~~~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~ 440 (541)
T 3djl_A 366 -----ADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLN 440 (541)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred -----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHH
Confidence 010001124667899999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 009460 440 KT 441 (534)
Q Consensus 440 ~~ 441 (534)
+.
T Consensus 441 ~~ 442 (541)
T 3djl_A 441 KQ 442 (541)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 36
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=3.4e-46 Score=391.32 Aligned_cols=351 Identities=13% Similarity=0.038 Sum_probs=278.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC------------C
Q 009460 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------------E 95 (534)
Q Consensus 33 ~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------------~ 95 (534)
++++.+++|+.. +... ....+.......++|+.+.+.|| |+++||.+.++.. .
T Consensus 11 ~l~~~~~~~~~~---~~~~-------~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~ 80 (394)
T 2rfq_A 11 EVMQRLDALLPT---LRER-------AQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACG 80 (394)
T ss_dssp HHHHHHHHHHHH---HHHT-------HHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---HHHh-------HHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhCh
Confidence 688999998863 1110 11122222234578999999887 7888887654321 1
Q ss_pred cchh--hhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccc
Q 009460 96 PAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173 (534)
Q Consensus 96 ~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K 173 (534)
+.++ ..| .++...|..+|+++||++|+| +|+.++|+++| | .|+|+++ +|+|+|| |+|
T Consensus 81 ~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~--~~g~~ln-----G~K 139 (394)
T 2rfq_A 81 STGWVSSII-GVHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVV--DGGYTVN-----GAW 139 (394)
T ss_dssp HHHHHHHHH-HHHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEE--TTEEEEE-----EEE
T ss_pred hHHHHHHHH-HHHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEe--CCeEEEe-----eeE
Confidence 2232 233 366778889999999999999 79999999998 3 5899998 7899999 999
Q ss_pred cccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccc
Q 009460 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQ 253 (534)
Q Consensus 174 ~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~ 253 (534)
+|++| +..||+++|+|+++.+++++|+++|+|| .+ ||++.+.|+++| ++++++++|.||||+||.++
T Consensus 140 ~~is~-a~~Ad~~~v~a~~~~~g~~~~~~~flV~-------~~--gv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~ 206 (394)
T 2rfq_A 140 AWSSG-CDHASWAVLGGPVIKDGRPVDFVSFLIP-------RE--DYRIDDVWNVVG---LRGTGSNTVVVEDVFVPTHR 206 (394)
T ss_dssp EEETT-GGGCSEEEEEEEEEETTEEEEEEEEEEE-------GG--GCEEECCCCBSS---CGGGCCEEEEEEEEEEEGGG
T ss_pred eccCC-CcccceEEEeeeecCCCCCCceeEEEEE-------hh--hcEEeCCccccc---cccCCCCceEEcceEcChHH
Confidence 99999 8999999999998544434589999999 43 899999999999 99999999999999999999
Q ss_pred cccccccccC--CCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccCCCCCCCcccccchH
Q 009460 254 MLMRVSQVTR--EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR---QFGSKNGGPETQVIDYK 328 (534)
Q Consensus 254 lL~~~~~v~~--~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~---qfg~~~~~~e~~i~~~q 328 (534)
+|+.....+. .|...... .. .....+...|+.+++.++|+++++++.+++|+++|+ |||+ ||++||
T Consensus 207 ~lg~~~~~~g~~~g~~~~~g-~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~-------~i~~~q 277 (394)
T 2rfq_A 207 VLSFKAMSNLTAPGLERNTA-PV-YKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGE-------KAKDDP 277 (394)
T ss_dssp EEEHHHHHTTCCGGGTTCCC-GG-GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC-------GGGSCH
T ss_pred hcccccccccCCCCcccCCC-cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCc-------ccccCH
Confidence 9974210000 11000000 00 223346678999999999999999999999999999 9999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 009460 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (534)
Q Consensus 329 ~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~ 408 (534)
.+|++|++|.+.+++++++++++++.++.... .+.. ...+....++++|+++++.+.++++.|+|+|||+||++++
T Consensus 278 ~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~---~g~~-~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~ 353 (394)
T 2rfq_A 278 FAKVRIAEASSDIDAAWRQLSGNVADEYALLV---AGEE-VPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGT 353 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCC
Confidence 99999999999999999999999988764321 1221 1124566789999999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccc-cHHHHHHHHHHHHHH
Q 009460 409 GLPELFAVYVPACTYEG-DNIVLLLQVARFLMK 440 (534)
Q Consensus 409 ~l~~~~rd~~~~~~~eG-~~~vl~~~ia~~ll~ 440 (534)
+++++|||++...+++| +++++++.+++.+++
T Consensus 354 ~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg 386 (394)
T 2rfq_A 354 PLQRFWRDAHAGRVHAANDPERAYVMYGTGEFG 386 (394)
T ss_dssp HHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcccccCchhHHHHHHHHHhC
Confidence 99999999999999999 999999999999885
No 37
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=2.6e-46 Score=395.70 Aligned_cols=353 Identities=13% Similarity=0.026 Sum_probs=280.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC------------C
Q 009460 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------------E 95 (534)
Q Consensus 33 ~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------------~ 95 (534)
++++.+++|+.. +... ....+.......++|+.+.+.|| |+++||.+.++.. .
T Consensus 39 ~l~~~~r~~~~~---~~~~-------a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~ 108 (422)
T 2jbr_A 39 SMLEKIQQILPQ---IAKN-------AESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACA 108 (422)
T ss_dssp CHHHHHHHHHHH---HHHT-------HHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH---HHHh-------hHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCc
Confidence 578888888753 1110 11111111234578999999887 7889887654421 1
Q ss_pred cchh--hhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccc
Q 009460 96 PAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173 (534)
Q Consensus 96 ~~~~--~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K 173 (534)
+.++ ..| .++...|..+|+++||++|||+ |+.++|+++| | +|+|+++ +|+|+|| |+|
T Consensus 109 ~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~--~~g~~ln-----G~K 167 (422)
T 2jbr_A 109 GTAWAFSLL-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEV--EGGIILN-----GDY 167 (422)
T ss_dssp HHHHHHHHH-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEE--TTEEEEE-----EEE
T ss_pred CHHHHHHHH-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEe--CCEEEEe-----eeE
Confidence 3332 223 4667789999999999999986 8999999998 4 5899998 7899999 999
Q ss_pred cccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCcceeeeCccccCccc
Q 009460 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQ 253 (534)
Q Consensus 174 ~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~ 253 (534)
+|++| +..||+++|+|++..++++.|+++|+|| .+ ||++.+.|+++| ++++++++|.||||+||.++
T Consensus 168 ~~is~-a~~Ad~~~v~a~~~~~~g~~g~~~flV~-------~~--gv~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~ 234 (422)
T 2jbr_A 168 GWSSG-CDHAEYAIVGFNRFDADGNKIYSFGVIP-------RS--DYEIVDNWYAQA---IKSSGSKMLKLVNVFIPEYR 234 (422)
T ss_dssp EEETT-GGGCSEEEEEEEEECTTSCEEEEEEEEE-------GG--GCEEECCCCBSS---SGGGCCEEEEEEEEEEEGGG
T ss_pred eeecC-CccccEEEEEEEecCCCCCceeEEEEEE-------cC--ceEEeCCccccC---cCCCCCCcEEEeeEEecHHH
Confidence 99999 8999999999998754344689999999 43 899999999999 99999999999999999999
Q ss_pred ccccccccc--CCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccCCCCCCCcccccchHH
Q 009460 254 MLMRVSQVT--REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR--QFGSKNGGPETQVIDYKT 329 (534)
Q Consensus 254 lL~~~~~v~--~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~--qfg~~~~~~e~~i~~~q~ 329 (534)
+|+....++ ..|.+....... .....+...|+.+++.++|+++++++.+++|+++|+ |||+ ||++||.
T Consensus 235 ~lg~~~~~~g~~~g~g~~~~~~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~-------~i~~~q~ 306 (422)
T 2jbr_A 235 ISKAKDMMEGKSAGFGLYPDSKI-FYTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGA-------NVGLATP 306 (422)
T ss_dssp EEEHHHHHHTCSTTTTSCTTCSS-SSSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCC-------BCTTCHH
T ss_pred eecccccccCCCCcccccCCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------ccccCHH
Confidence 998521110 013220000000 233456778999999999999999999999999998 9999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 009460 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (534)
Q Consensus 330 ~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (534)
+|++|++|.+.+++++++++++++.+++... .+.. ...+....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 307 vq~~la~~~~~~~aar~~~~~aa~~~d~~~~---~g~~-~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~ 382 (422)
T 2jbr_A 307 ALMRIAESTHQVAAARALLEKTWEDHRIHGL---NHQY-PNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSE 382 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCc
Confidence 9999999999999999999999988764321 1221 11235567899999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccccH-HHHHHHHHHHHHHH
Q 009460 410 LPELFAVYVPACTYEGDN-IVLLLQVARFLMKT 441 (534)
Q Consensus 410 l~~~~rd~~~~~~~eG~~-~vl~~~ia~~ll~~ 441 (534)
++++|||++...+++|++ +++++.+++.+++.
T Consensus 383 l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg~ 415 (422)
T 2jbr_A 383 LQRLFRDAHMTGAHAYTDYDVCAQILGRELMGM 415 (422)
T ss_dssp HHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCccchhHHHHHHHHHHhCC
Confidence 999999999999999999 99999999998853
No 38
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=2.1e-34 Score=307.82 Aligned_cols=272 Identities=10% Similarity=0.063 Sum_probs=213.7
Q ss_pred CHHHHHHHHHHHhcccceeeEecCCCCCC--------CCCCCCceEEE-EeCCCCeEEEecCCCCccccccCCCCCCccE
Q 009460 115 TDEQHQKWLPLAYKMEIIGCYAQTELGHG--------SNVQGLETTAT-FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTH 185 (534)
Q Consensus 115 t~eq~~~~L~~l~~g~~~~~~a~tE~~~G--------sd~~~~~ttA~-~d~~~~~~vLntp~~~G~K~~v~~la~~A~~ 185 (534)
.+|||++|||++++|++++|+|+|||+.| ||+. +.|+++ +| +|+|||| |+|+|+|| ..||+
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~--gdg~Vln-----G~K~~iT~--~~Ad~ 191 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQT--EKGIVVR-----GARMTATF--PLADE 191 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEEC--SSEEEEE-----EEEEEEEC--CCSSE
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEE--CCEEEEE-----eEEEEecc--ccccE
Confidence 47999999999999999999999999976 6775 777775 55 8999999 99999998 88999
Q ss_pred EEEEEEeccC-CCCCceEEEEEEeccCCCCCCCCCeEEe--eCCCc--------cCcccCCC-CCcceeeeCccccCccc
Q 009460 186 AVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIG--DIGMK--------FGNGAYNT-MDNGVLRFEHVRIPRNQ 253 (534)
Q Consensus 186 ~lV~Ar~~~~-~~~~G~~~flV~ir~~~~~~~~pGv~i~--~~~~k--------~G~~~~~~-~~~~~v~fd~vrVP~~~ 253 (534)
++|+|+++.+ +...++++|+|| .+.|||++. +.+.+ +| .+. .+++.|.||||+||.++
T Consensus 192 ~iV~art~~~~~~~~~~s~flVp-------~dtpGv~v~~r~~~~~~~s~~d~~lg---~r~~~~~~~v~FddV~VP~e~ 261 (481)
T 2yyk_A 192 VLIFPSILLQAGSEKYALAFALP-------TSTPGLHFVCREALVGGDSPFDHPLS---SRVEEMDCLVIFDDVLVPWER 261 (481)
T ss_dssp EEECCCSCCCTTCGGGCEEEEEE-------TTCTTEEEEECCCCCCCSCTTTCTTT---TTCCCCEEEEEEEEEEEEGGG
T ss_pred EEEEEecCCCCCCCCeEEEEEEE-------CCCCCEEEEeccccccCCcccccccc---ccCCCCeEEEEEccEEECHHH
Confidence 9999998642 223468899999 889999995 33322 34 443 56788999999999999
Q ss_pred cccccccccCCCceeccCcchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHH
Q 009460 254 MLMRVSQVTREGKYVQSNVPRQLL--YGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 331 (534)
Q Consensus 254 lL~~~~~v~~~g~~~~~~~~~~~~--~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q 331 (534)
+|+. + +.|.+.. .. ...+..+|+..++.++|.++.++.++.+|+.. | +|.+||.+|
T Consensus 262 vl~~-G---~~~~g~~------~~~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~---------gi~~~q~vq 319 (481)
T 2yyk_A 262 VFIL-G---NVELCNN------AYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEG---I---------GADVYGHVQ 319 (481)
T ss_dssp EEEE-S---CHHHHHH------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T---------TGGGSHHHH
T ss_pred ccCC-C---CccHHHH------HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh---c---------ChhhhHHHH
Confidence 9831 0 1222221 12 34567889999999999999999999988763 2 588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChh
Q 009460 332 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 411 (534)
Q Consensus 332 ~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~ 411 (534)
++|++|.+.+++++++++++++..+ ..+..........++++|.++++.+.++++.|+|+|||.|++ .+++
T Consensus 320 ~~laem~~~leaar~l~~~aa~~~d-------~~~~G~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e 390 (481)
T 2yyk_A 320 EKIAEIIVYLEAMRAFWTRAEEEAK-------ENAYGLLVPDRGALDGARNLYPRLYPRIREILEQIGASGLIT--LPSE 390 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCE-------ECTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-------ccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccH
Confidence 9999999999999999999987542 101111112345689999999999999999999999998888 7877
Q ss_pred HHhhhhcccc------cccccHHHHHHHHHHHH
Q 009460 412 ELFAVYVPAC------TYEGDNIVLLLQVARFL 438 (534)
Q Consensus 412 ~~~rd~~~~~------~~eG~~~vl~~~ia~~l 438 (534)
++| +..... ...|.+++++.+++|.+
T Consensus 391 ~~~-~~~i~~~l~~~l~~~g~~~~~r~~i~rl~ 422 (481)
T 2yyk_A 391 KDF-KGPLGPFLEKFLQGAALEAKERVALFRLA 422 (481)
T ss_dssp HHH-HSTTHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHh-ChhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 777 774322 23499999999999854
No 39
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2e-34 Score=308.38 Aligned_cols=275 Identities=12% Similarity=0.003 Sum_probs=209.8
Q ss_pred HHhcCCC--HHHHHHHHHHHhcccceeeEecCCCCCC--------CCC-CCCceEEEEeCCCCeEEEecCCCCccccccC
Q 009460 109 AIKGQGT--DEQHQKWLPLAYKMEIIGCYAQTELGHG--------SNV-QGLETTATFDPQTDEFVIHSPTLTSSKWWPG 177 (534)
Q Consensus 109 ~i~~~Gt--~eq~~~~L~~l~~g~~~~~~a~tE~~~G--------sd~-~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~ 177 (534)
.+..+|| +|||++|||++++|++++|+|+|||+.| ||+ ..++ +|+++ +|+|||| |+|+|+|
T Consensus 119 ~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~--gdg~vln-----G~K~~iT 190 (490)
T 1u8v_A 119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKR--EDGIVVR-----GAKAHQT 190 (490)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEEC--SSEEEEE-----EEECSCT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEE--CCEEEEE-----eEEEEee
Confidence 4458999 9999999999999999999999999874 775 3454 78877 8999999 9999999
Q ss_pred CCCCCccEEEEEEEeccC-CCCCceEEEEEEeccCCCCCCCCCeEEe---eCCCc----------cCcccC-CC-CCcce
Q 009460 178 GLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIG---DIGMK----------FGNGAY-NT-MDNGV 241 (534)
Q Consensus 178 ~la~~A~~~lV~Ar~~~~-~~~~G~~~flV~ir~~~~~~~~pGv~i~---~~~~k----------~G~~~~-~~-~~~~~ 241 (534)
| +..||+++|+|++..+ +...++.+|+|| .+.|||++. +.+.+ +| . +. .+++.
T Consensus 191 ~-a~~Ad~~iV~art~~~~~~~~~~s~flVp-------~d~pGv~v~~~r~~~~~~~~~~~~d~~lg---~~r~~~~~~~ 259 (490)
T 1u8v_A 191 G-SINSHEHIIMPTIAMTEADKDYAVSFACP-------SDADGLFMIYGRQSCDTRKMEEGADIDLG---NKQFGGQEAL 259 (490)
T ss_dssp T-CTTCSEEEECCSSCCCGGGGGGCEEEEEE-------TTCTTEEEEECCCTTGGGGGSTTCCGGGS---SSSCCCCCEE
T ss_pred C-CcccCEEEEEEecCCCCCCCCeEEEEEEE-------CCCCCEEEEecccccccccccccccCCcc---ccccCCceEE
Confidence 9 8999999999997532 223457899999 889999995 34443 45 4 42 56788
Q ss_pred eeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCc
Q 009460 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (534)
Q Consensus 242 v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e 321 (534)
|.||||+||.+++|+. + +.|.++. .....+...|+.+++.+++.+..++.++.+... .|
T Consensus 260 v~FddV~VP~e~vl~~-g---~~~~g~~------~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~---~~-------- 318 (490)
T 1u8v_A 260 VVFDNVFIPNDRIFLC-Q---EYDFAGM------MVERFAGYHRQSYGGCKVGVGDVVIGAAALAAD---YN-------- 318 (490)
T ss_dssp EEEEEEEEEGGGEEEE-S---CGGGHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--------
T ss_pred EEECceEeCHHHccCC-C---ChhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--------
Confidence 9999999999999831 0 1233332 333445567777766666666666666654332 13
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009460 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (534)
Q Consensus 322 ~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG 401 (534)
+|.+||.+|++|++|.+.+++++++++++++..+ ..+..........++++|.++++.+.++++.|+|+|||
T Consensus 319 -gi~~~q~vq~~laem~~~leaar~l~~~aa~~~d-------~~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg 390 (490)
T 1u8v_A 319 -GAQKASHVKDKLIEMTHLNETLYCCGIACSAEGY-------PTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGG 390 (490)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-------ECTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCT
T ss_pred -CchhcHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------ccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4789999999999999999999999999987542 10111111234568999999999999999999999999
Q ss_pred ccccccCChhHHhhhh-cccccccccHHHHHHH
Q 009460 402 HGYLCSSGLPELFAVY-VPACTYEGDNIVLLLQ 433 (534)
Q Consensus 402 ~Gy~~~~~l~~~~rd~-~~~~~~eG~~~vl~~~ 433 (534)
.||+ +|++++|||. +++.++|.....++..
T Consensus 391 ~g~~--~p~er~~rd~~~~~~~~~~~~~~l~~~ 421 (490)
T 1u8v_A 391 LMVT--MPSEADFKSETVVGRDGETIGDFCNKF 421 (490)
T ss_dssp HHHH--CCCHHHHTCCCBCSTTSCBHHHHHHHH
T ss_pred chhc--ChHHHHHhCchhccccchhHHHHHHHH
Confidence 9998 8888999988 7888887766555543
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.97 E-value=1.3e-29 Score=270.74 Aligned_cols=276 Identities=12% Similarity=-0.003 Sum_probs=191.9
Q ss_pred CCC--HHHHHHHHHHHhcccceeeEecCCCCC--------CCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCC
Q 009460 113 QGT--DEQHQKWLPLAYKMEIIGCYAQTELGH--------GSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV 182 (534)
Q Consensus 113 ~Gt--~eq~~~~L~~l~~g~~~~~~a~tE~~~--------Gsd~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~ 182 (534)
.|+ .||+++|||++++|++++|+|+|||+. |||+ .+.|++ .+ +|+|||| |+|+|++| +..
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~~-~~--gdg~Vln-----G~K~~iT~-a~~ 196 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIVE-KT--DDGIIVN-----GVKAVGTG-IAF 196 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEEE-EC--SSEEEEE-----EEEEEEES-GGG
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEEE-EE--CCEEEEE-----EEEEEECC-ccc
Confidence 554 568899999999999999999999986 5788 665543 34 7899999 99999999 999
Q ss_pred ccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCC----------CCCcceeeeCccccCcc
Q 009460 183 STHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN----------TMDNGVLRFEHVRIPRN 252 (534)
Q Consensus 183 A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~----------~~~~~~v~fd~vrVP~~ 252 (534)
||+++|+|+++.....+++++|+|| .+.|||++.+.+.++| .+ +...+.|.||||+||.+
T Consensus 197 Ad~~lV~a~t~~~~~~~~~s~FlVp-------~d~pGv~v~~~~~~~G---~~~~d~~ls~~~~~~~a~v~FddV~VP~e 266 (515)
T 3hwc_A 197 GDYMHIGCLYRPGIPGEQVIFAAIP-------TNTPGVTVFCRESTVK---NDPAEHPLASQGDELDSTTVFDNVFIPWE 266 (515)
T ss_dssp CSEEEECCCCCTTCCGGGCEEEEEE-------TTCTTEEEEECCCCCC---SCTTTCTTTTSCCCCEEEEEEEEEEEEGG
T ss_pred cCEEEEEEEecCCCCCCeEEEEEEE-------CCCCCeEEeecccccC---ccccccccccccCCceEEEEECceEECHH
Confidence 9999999997332222238999999 8999999987666665 22 12367899999999999
Q ss_pred ccc--cccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHH
Q 009460 253 QML--MRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQ 330 (534)
Q Consensus 253 ~lL--~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~ 330 (534)
++| |. .|.++. ++...+...+...+...++.+..++.++.+++. +| +|++||.+
T Consensus 267 ~vl~~Ge------~g~g~~------~~~~~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~---------gI~~fQ~V 322 (515)
T 3hwc_A 267 QVFHIGN------PEHAKL------YPQRIFDWVHYHILIRQVLRAELIVGLAILITE---HI---------GTSKLPTV 322 (515)
T ss_dssp GEEEESC------TTGGGT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---------TCTTSHHH
T ss_pred HccCCCC------ccHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hc---------CCcccHHH
Confidence 999 43 344332 221222222111112334444444444444432 23 47899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC-
Q 009460 331 QNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG- 409 (534)
Q Consensus 331 q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~- 409 (534)
|++|++|.+.+++++++++.+++..+ ..+..........++++|.++++.+.++++.|+|+|||.+++..+.
T Consensus 323 q~kLAem~~~lEaaR~l~~~Aa~~~d-------~~~~G~~~p~~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~Ps~~ 395 (515)
T 3hwc_A 323 SARVAKLVAFHLAMQAHLIASEETGF-------HTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMIPSEG 395 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCE-------ECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCHH
Confidence 99999999999999999998876442 1111111123456899999999999999999999999999986432
Q ss_pred ------hhHHhhhhcccccccccHHHHHHHHHHHHH
Q 009460 410 ------LPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (534)
Q Consensus 410 ------l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (534)
+..++..............+-..+++..+.
T Consensus 396 d~~~pe~~~~l~ky~~g~~~~a~~R~kl~rl~~d~~ 431 (515)
T 3hwc_A 396 QWDDSQSGQWFVKLNNGPKGNPRERVQIGRVIRDLY 431 (515)
T ss_dssp HHHCTTTHHHHHHHTCCTTCCTHHHHHHHHHHHHHH
T ss_pred HhcCchhHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 333333333333334455555556665553
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.90 E-value=5.7e-22 Score=212.12 Aligned_cols=243 Identities=11% Similarity=-0.013 Sum_probs=177.1
Q ss_pred HHHHHHHHHHhcccceeeEecCCCCCCC-----CCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEE
Q 009460 117 EQHQKWLPLAYKMEIIGCYAQTELGHGS-----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYAR 191 (534)
Q Consensus 117 eq~~~~L~~l~~g~~~~~~a~tE~~~Gs-----d~~~~~ttA~~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar 191 (534)
+...+|+..+...++..+.++|.|-..- ....+-...+. ..++||||| |.|.|+|| +..||+++|+++
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve-~~~dGiVVn-----GaK~~~T~-a~~Ad~i~V~a~ 206 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIE-KNDKGIVVS-----GVKAIGTG-VAFADWIHIGVF 206 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEE-ECSSEEEEE-----EEEEEEES-GGGCSEEEECCC
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEE-EcCCeEEEe-----eEehhhcC-ccccCEEEEEee
Confidence 4557899999999999999999985321 11111122222 226899999 99999999 999999999999
Q ss_pred eccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCC----------CcceeeeCccccCccccccccccc
Q 009460 192 LITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM----------DNGVLRFEHVRIPRNQMLMRVSQV 261 (534)
Q Consensus 192 ~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~----------~~~~v~fd~vrVP~~~lL~~~~~v 261 (534)
+....+.++...|+|| .+.|||++.......+ .+.. ..+.|.||||+||.++++.- +
T Consensus 207 t~~~~~~d~~~~F~VP-------~dtPGv~~i~r~~~~~---~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~-G-- 273 (517)
T 4g5e_A 207 FRPGIPGDQIIFAATP-------VNTPGVTIVCRESVVK---EDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHL-G-- 273 (517)
T ss_dssp CCTTCCGGGCEEEEEE-------TTCTTEEEEECCCCCC---SCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEE-S--
T ss_pred cCCCCCccceEEEEEe-------cCCCCeEEEecccccC---CCccccccccccCCcceEEEecceeccHHHcccc-C--
Confidence 8766555678899999 8999999855444443 2222 23679999999999998731 0
Q ss_pred cCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHH
Q 009460 262 TREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASA 341 (534)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~ 341 (534)
+.+.... .....+...|...++..++.+..++..+..++. ++ .|.+||.+|++|++|.+.+
T Consensus 274 -e~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~ae---~~---------Gi~~fq~Vq~kLaEm~~~~ 334 (517)
T 4g5e_A 274 -NPEHAKL------YPQRVFDWLHYHALIRQSVRAELMAGLAILITE---HI---------GTNKIPAVQTRVAKLIGFH 334 (517)
T ss_dssp -CTTHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---------TCTTSHHHHHHHHHHHHHH
T ss_pred -ChhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh---------CCcccHHHHHHHHHHHHHH
Confidence 2232222 344556677777777778888888888888874 33 3679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCC-chhhHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 009460 342 YAFRFVGEWLKWLYTDVTQRLQANDFST-LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (534)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~ 406 (534)
++++++++.+.... ...+... .++ ...++++|.++++.+.+++++++|++||.|++.
T Consensus 335 E~~ral~~aaa~~a-------~~~~~G~~~P~-~~~a~~aK~~a~~~~~rv~~eaiqi~GG~g~~~ 392 (517)
T 4g5e_A 335 QAMLAHIVASEELG-------FHTPGGAYKPN-ILIYDFGRALYLENFSQMIYELVDLSGRSALIF 392 (517)
T ss_dssp HHHHHHHHHHHHTC-------EECTTCCEECC-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCC
T ss_pred HHHHHHHHHHHHhc-------ccCCCCCcCcC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence 99999887664311 1111111 222 346789999999999999999999999999984
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=91.20 E-value=1.5 Score=47.50 Aligned_cols=125 Identities=8% Similarity=-0.008 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHH
Q 009460 296 LSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHA 375 (534)
Q Consensus 296 ~~~al~~av~Ya~~R~qfg~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (534)
+...+-.++.++.+| +|+ .|.+-|.+..||+++.+.+|++.+.+.++...+... + .+....
T Consensus 467 ~~~~~~~~~~~~~~~--~~~-------~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~------~----~~~~~~ 527 (597)
T 3owa_A 467 AKKIGLMVAGLAAQK--YGK-------ALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTT------G----LEKNKQ 527 (597)
T ss_dssp HHHHHHHHHHHHHHH--HGG-------GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C----SGGGHH
T ss_pred HHHHHHHHHHHHHHH--hCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------C----ccchHH
Confidence 334445555665555 455 788899999999999999999999998887665421 1 123345
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccccH-HHHHHHHHHHHHHH
Q 009460 376 CTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMKT 441 (534)
Q Consensus 376 ~~s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~-~vl~~~ia~~ll~~ 441 (534)
...++++||.+...++-..+.++. ..+...-.+..++...+-+.-+...| ..++.+||+.++..
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 592 (597)
T 3owa_A 528 KVLYTEVFCQEAFNEIEAHAKETL--IAVENGDMLRMMLSSLRKLTRHTPLNVIPKKREIAAKILED 592 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 567899999999999999888887 33443333333333343333333333 45566666666543
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=58.40 E-value=69 Score=34.32 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 009460 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (534)
Q Consensus 323 ~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~G 400 (534)
.+.+.|.+..||++++..+|++.++..++.+.+.. +. +.......+++.||.+...++-..+.++..
T Consensus 509 ~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~-------g~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 575 (607)
T 2uxw_A 509 GIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSE-------GH----PTAQHEKMLCDTWCIEAAARIREGMAALQS 575 (607)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----cchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888999999999999999998888877554431 11 122223566888888888887777777443
No 44
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=24.22 E-value=6.3e+02 Score=26.39 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=64.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 009460 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (534)
Q Consensus 323 ~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q~~GG~ 402 (534)
.+..-|.+-.++++++..+|++..+..++... .+ . ....++.|+.+...++...+.+++-+
T Consensus 471 ~l~~~q~~l~~lad~~~~~~~~~~~l~r~~~~---------~~------~---~~~l~~~~~~~~~~~~~~~~~~~~~~- 531 (577)
T 2z1q_A 471 GVEEEQEVLGAVADILIDAYAAESALLRARRL---------GG------L---APVLARIYLAQALDRAQAGALSVLPR- 531 (577)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CT------T---HHHHHHHHHHHHHHHHHHHHHHHGGG-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cC------c---HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44455788899999999999888877665321 00 1 45678899999888888888887744
Q ss_pred cccccCCh---hHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009460 403 GYLCSSGL---PELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (534)
Q Consensus 403 Gy~~~~~l---~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (534)
+....+. ...+|.. ......+++.+..+||+.++..
T Consensus 532 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ia~~~~~~ 570 (577)
T 2z1q_A 532 -LVEGDEARVVYSAARRL--TKREPGDLVALRRQAAEAVLEA 570 (577)
T ss_dssp -TCCTTTTHHHHHHHHHH--TCCCCCCHHHHHHHHHHHHHHH
T ss_pred -HHcCCchhHHHHHHHHh--cccCCCChHHHHHHHHHHHHhc
Confidence 2322222 2233333 2344557788999999998864
Done!