BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009461
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
Query: 282 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXX 341
P+ GYV+LHT GDLN+ELHCD+TP++CENFI LC++ YY+G FHRSIRNF+IQ
Sbjct: 16 PRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDP 75
Query: 342 XXXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHT 401
ES WGKPFKDE L H+GRG++SMANSGP++N SQFFI ++S +L+ KHT
Sbjct: 76 TGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 402 VFXXXXXXXXXXXXMEKVPVD-ENDRPLEEIKITGVTVFVNPYSE 445
+F ME V D + DRP EEI+I TVFV+PY E
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEE 180
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V LHT GD+ IE+ C+ TP++CENF+ LC YYNG FHR+I+ FM+Q
Sbjct: 9 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 68
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXX 407
SIWGK F+DE + L H+ RGVVSMAN+GP+TNGSQFFI Y HL+ K+TVF
Sbjct: 69 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 128
Query: 408 XXXXXXXXMEKVPVDEND-RPLEEIKITGVTVFVNPYSE 445
+EK+PV+E RPL ++ I +T+ NP+++
Sbjct: 129 DGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ 167
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V LHT GD+ IE+ C+ TP++CENF+ LC YYNG FHR+I+ FM+Q
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXX 407
SIWGK F+DE + L H+ RGVVSMAN+GP+TNGSQFFI Y HL+ K+TVF
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122
Query: 408 XXXXXXXXMEKVPVDEND-RPLEEIKITGVTVFVNPYSE 445
+EK+PV+E RPL ++ I +T+ NP+++
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ 161
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 12/175 (6%)
Query: 283 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQX---- 338
KKKGY+++ TT G LNIELH D+ PR+C++F+ LC Y++ FHR IRNFMIQ
Sbjct: 4 KKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAE 63
Query: 339 ----XXXXXXXXXXESI----WGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILY 390
SI G PF+DE +++L+H G GV+SMAN G H+N S+FFI +
Sbjct: 64 LRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITF 123
Query: 391 KSATHLNYKHTVFXXXXXXXXXXXXMEKVPVDENDRPLEEIKITGVTVFVNPYSE 445
KS HLN KHT+F EK+ D+ D+PL+ K+ + VF NP+ +
Sbjct: 124 KSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVFKNPFED 178
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Query: 282 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXX 341
P G V L TT GD++IEL P++C NFI LC YY+ FHR + F++Q
Sbjct: 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDP 80
Query: 342 XXXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHT 401
ESI+G PFKDE +S+L + RG+V+MAN+G H NGSQFF A LN KHT
Sbjct: 81 TGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHT 140
Query: 402 VFXXXXXXXX-XXXXMEKVPVDENDRPLEEIKITGVTVFVNPYSE 445
+F + +V +D+++RP KI V NP+ +
Sbjct: 141 IFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFNPFDD 185
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 95/162 (58%)
Query: 280 KNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXX 339
K ++GY+ ++T GD +EL+ +P++C NF TLCE G+Y+ FHR I NF+IQ
Sbjct: 33 KGHTERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGG 92
Query: 340 XXXXXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYK 399
+SI+G+ F+DE+N +L H+G G++SM+N+GP+TN SQFFI HL+ K
Sbjct: 93 DPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGK 152
Query: 400 HTVFXXXXXXXXXXXXMEKVPVDENDRPLEEIKITGVTVFVN 441
HT+F + V ++P+ ++KI + VN
Sbjct: 153 HTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAVN 194
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V++ T +GDL EL C P++C+NF+ L GYY FH++I+ F+IQ
Sbjct: 19 VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG 78
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANSG----PHTNGSQFFILYKSATHLNYKHTVF 403
ESI+G+ F DE+ +L + RG++SMA+ G P+TNGSQFFI Y S LN ++ +F
Sbjct: 79 GESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIF 138
Query: 404 XXXXXXXXXXXXMEKVPVDENDRPLEEIKITGVTVFVNPYSE 445
+E P D++ +P++EI I + + NP ++
Sbjct: 139 GKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHSNPIAD 180
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 85/146 (58%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V L T+ G + +EL+ P++C+NF L RGYYNG FHR I++FMIQ
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXX 407
SI+GK F+DE++ L +G G+++MAN+GP TNGSQFF+ L+ KHT+F
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVC 133
Query: 408 XXXXXXXXMEKVPVDENDRPLEEIKI 433
+ V + DRP++++KI
Sbjct: 134 QGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 85/146 (58%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V L T+ G + +EL+ P++C+NF L RGYYNG FHR I++FMIQ
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXX 407
SI+GK F+DE++ L +G G+++MAN+GP TNGSQFF+ L+ KHT+F
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVC 133
Query: 408 XXXXXXXXMEKVPVDENDRPLEEIKI 433
+ V + DRP++++KI
Sbjct: 134 QGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 85/146 (58%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V L T+ G + +EL+ P++C+NF L RGYYNG FHR I++FMIQ
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXX 407
SI+GK F+DE++ L +G G+++MAN+GP TNGSQFF+ L+ KHT+F
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVC 133
Query: 408 XXXXXXXXMEKVPVDENDRPLEEIKI 433
+ V + DRP++++KI
Sbjct: 134 QGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 83/149 (55%)
Query: 290 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXXXE 349
++TT GD++I L ++ +NF GYYN FHR I++FM+Q E
Sbjct: 10 IYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGE 69
Query: 350 SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXX 409
SIWG F+DE L HS +VSMAN GP+TNGSQFFI L++KHTVF
Sbjct: 70 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQG 129
Query: 410 XXXXXXMEKVPVDENDRPLEEIKITGVTV 438
+EKV D+ D+PLE+IKI + +
Sbjct: 130 SKIVLDIEKVRTDKRDKPLEDIKILNIKI 158
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Query: 290 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXXXE 349
+HT+ GD++ +L P++ ENF GYYNG FHR I+ FMIQ E
Sbjct: 26 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE 85
Query: 350 SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXX 409
SIWG F+DE +S L H +SMAN+G +TNGSQFFI L+ KHTVF
Sbjct: 86 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 145
Query: 410 XXXXXXMEKVPVD-ENDRPLEEIKITGVTV 438
+ V V+ + D+P E++ I +TV
Sbjct: 146 MEVVQRISNVKVNPKTDKPYEDVSIINITV 175
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + I L ++ P++ ENF+ L E+GY Y G FHR I++FMIQ S
Sbjct: 22 GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMS 81
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N KL H G G VSMAN+GP TNGSQFFI T L+ KH VF
Sbjct: 82 IYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGM 140
Query: 411 XXXXXMEKVPVDENDRPLEEIKIT 434
+E D +DRPL + I
Sbjct: 141 TVVHSIELQATDGHDRPLTDCTIV 164
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXXXXXXXE-S 350
G + I L + P++ ENF+ L E+GY Y G FHR I++FMIQ S
Sbjct: 30 GRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVS 89
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N KL H G G VSMAN+GP TNGSQFFI T L+ KH VF
Sbjct: 90 IYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGM 148
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+E D +DRPL I
Sbjct: 149 TVVHSIELQATDGHDRPLTNCSI 171
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY---------YNGVAFHRSIRNFMIQXXX-XX 342
G + +L DI P++C+NF+ LC E+G Y G FHR ++NFMIQ
Sbjct: 34 GRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSE 93
Query: 343 XXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTV 402
ESI+G FKDE N L H ++SMAN G HTNGSQFFI K A HL+ H V
Sbjct: 94 GNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVV 152
Query: 403 FXXXXXXXXXXXXMEKVPVDENDRPLEEIKITGVTVF 439
F +E + D RP ++++ V
Sbjct: 153 FGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 76/151 (50%), Gaps = 13/151 (8%)
Query: 295 GDLNIELHCDITPRSCENFITLC-----------ERGYYNGVAFHRSIRNFMIQXXX-XX 342
G + +EL+ DI PR+C NF+ LC + +Y G FHR I+NFMIQ
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 343 XXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTV 402
ESI+G F DE + H VVSMAN GP+TNGSQFFI A HLN H V
Sbjct: 81 GDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVV 139
Query: 403 FXXXXXXXXXXXXMEKVPVDENDRPLEEIKI 433
F +E + + +RPL ++ I
Sbjct: 140 FGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 95.9 bits (237), Expect = 5e-20, Method: Composition-based stats.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + +EL DI PR+ ENF LC ERG+ Y+ FHR I FM Q +S
Sbjct: 25 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N +L H G GV+SMANSGP+TNGSQFFI L+ KH VF
Sbjct: 85 IYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQ 143
Query: 411 XXXXXMEKV 419
ME V
Sbjct: 144 NVVKKMESV 152
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 95.1 bits (235), Expect = 8e-20, Method: Composition-based stats.
Identities = 56/142 (39%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 295 GDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQXXX-XXXXX 345
G + IEL D+ P++ ENF C + Y G FHR I++FMIQ
Sbjct: 25 GRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG 84
Query: 346 XXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXX 405
SI+ PF DE N KL HS G++SMANSGP TNG QFFI L+ KH VF
Sbjct: 85 TGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGK 143
Query: 406 XXXXXXXXXXMEKVPVDENDRP 427
+E VP N++P
Sbjct: 144 IIDGLLVMRKIENVPTGPNNKP 165
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 268 VTTNEFEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLC--ERGY-YNG 324
++ N Y+ V+ N K G V L EL D+ P++ ENF LC E+G+ Y G
Sbjct: 1 MSGNPLVYLDVDANGKPLGRVVL---------ELKADVVPKTAENFRALCTGEKGFGYKG 51
Query: 325 VAFHRSIRNFMIQXXXXXX-XXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNG 383
FHR I +FM Q +SI+G F DE N L H G GV+SMAN+GP+TNG
Sbjct: 52 STFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNG 110
Query: 384 SQFFILYKSATHLNYKHTVF 403
SQFFI L+ KH VF
Sbjct: 111 SQFFICTIKTDWLDGKHVVF 130
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 271 NEFEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAF 327
N Y+ V+ N K G V L EL D+ P++ ENF LC E+G+ Y G F
Sbjct: 2 NPLVYLDVDANGKPLGRVVL---------ELKADVVPKTAENFRALCTGEKGFGYKGSTF 52
Query: 328 HRSIRNFMIQXXXXXX-XXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQF 386
HR I +FM Q +SI+G F DE N L H G GV+SMAN+GP+TNGSQF
Sbjct: 53 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQF 111
Query: 387 FILYKSATHLNYKHTVF 403
FI L+ KH VF
Sbjct: 112 FICTIKTDWLDGKHVVF 128
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 271 NEFEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAF 327
N Y+ V+ N K G V L EL D+ P++ ENF LC E+G+ Y G F
Sbjct: 3 NPLVYLDVDANGKPLGRVVL---------ELKADVVPKTAENFRALCTGEKGFGYKGSTF 53
Query: 328 HRSIRNFMIQXXXXXX-XXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQF 386
HR I +FM Q +SI+G F DE N L H G GV+SMAN+GP+TNGSQF
Sbjct: 54 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 387 FILYKSATHLNYKHTVF 403
FI L+ KH VF
Sbjct: 113 FICTIKTDWLDGKHVVF 129
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 271 NEFEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAF 327
N Y+ V+ N K G V L EL D+ P++ ENF LC E+G+ Y G F
Sbjct: 3 NPLVYLDVDANGKPLGRVVL---------ELKADVVPKTAENFRALCTGEKGFGYKGSTF 53
Query: 328 HRSIRNFMIQXXXXXX-XXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQF 386
HR I +FM Q +SI+G F DE N L H G GV+SMAN+GP+TNGSQF
Sbjct: 54 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 387 FILYKSATHLNYKHTVF 403
FI L+ KH VF
Sbjct: 113 FICTIKTDWLDGKHVVF 129
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXX--XXX 342
+G V LHT+ GDL++EL P +C NF+ LC GYY FHR +++F++Q
Sbjct: 21 RGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGT 80
Query: 343 XXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPH--------------TNGSQFFI 388
+ GKPF E + +L RG+V +AN G TNG+QFFI
Sbjct: 81 GRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFI 140
Query: 389 LYKSATHLNYKHTVFXXXXX-XXXXXXXMEKVPVDENDRPLEEIKITGVTVFVNPYSE 445
A LN +T+F + V + DRP+ I V V NP+ +
Sbjct: 141 TLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFED 198
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + I L P++ +NF+ L E+G+ Y FHR I++FMIQ +S
Sbjct: 27 GRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKS 86
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N KL H G G VSMAN+G TNGSQFFI L+ KH VF
Sbjct: 87 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 145
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+E D D+PL+++ I
Sbjct: 146 EVVRKVETTKTDGRDKPLKDVTI 168
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + I L P++ +NF+ L E+G+ Y FHR I++FMIQ +S
Sbjct: 27 GRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKS 86
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N KL H G G VSMAN+G TNGSQFFI L+ KH VF
Sbjct: 87 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 145
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+E D D+PL+++ I
Sbjct: 146 EVVRKVETTKTDGRDKPLKDVTI 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 278 VEKNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERG---------------YY 322
V +P LHT GD+ I L + P++ NF+ L + +Y
Sbjct: 16 VTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFY 75
Query: 323 NGVAFHRSIRNFMIQXXXXXXXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTN 382
+G FHR I+ FMIQ F DE + +L +++MAN+GP TN
Sbjct: 76 DGAVFHRVIQGFMIQGGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTN 132
Query: 383 GSQFFILYKSATHLNYKHTVFXXX--XXXXXXXXXMEKVPVDENDRPLEEIKITGVTV 438
GSQFFI HLN +HT+F + K D NDRP + + I +T+
Sbjct: 133 GSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERG---------YYNGVAFHRSIRNFMIQXXX-XX 342
G + +EL DI P++ ENF LC E+G ++ G FHR I+ FMIQ
Sbjct: 30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89
Query: 343 XXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTV 402
ESI+G+ F+DE N H G++SMAN+G +TNGSQFFI HL+ KH V
Sbjct: 90 QNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVV 148
Query: 403 FXXXXXXXXXXXXMEKVPV 421
F +E V V
Sbjct: 149 FGQVIKGMGVAKILENVEV 167
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLCERGY---YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G + ++L DI P++ +NF TLCER Y G FHR I FM+Q S
Sbjct: 42 GRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRS 101
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+G+ F DE N +L H+ G++SMAN G HTNGSQFFI L+ KH VF
Sbjct: 102 IYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVF 153
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + L P++ +NF+ L E+G+ Y FHR I++FMIQ +S
Sbjct: 30 GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 89
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N KL H G G VSMAN+G TNGSQFFI L+ KH VF
Sbjct: 90 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 148
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+E D D+PL+++ I
Sbjct: 149 EVVRKVESTKTDSRDKPLKDVII 171
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + L P++ +NF+ L E+G+ Y FHR I++FMIQ +S
Sbjct: 20 GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 79
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N KL H G G VSMAN+G TNGSQFFI L+ KH VF
Sbjct: 80 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 138
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+E D D+PL+++ I
Sbjct: 139 EVVRKVESTKTDSRDKPLKDVII 161
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERG--------YYNGVAFHRSIRNFMIQXXX-XXX 343
G + +EL+ D P++ ENF LC E+G +Y FHR I NFMIQ
Sbjct: 22 GRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFTRG 81
Query: 344 XXXXXESIWGKPFKDEVNSKLL--HSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHT 401
ESI+G F+DE S H+G G +SMAN+GP+TNGSQFFI + L+ KH
Sbjct: 82 NGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHV 141
Query: 402 VF 403
VF
Sbjct: 142 VF 143
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + + L D+ P + ENF LC E+G+ + G +FHR I FM Q +S
Sbjct: 26 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 85
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+GK F DE N L H+G G++SMANSGP+TNGSQFF+ L+ KH VF
Sbjct: 86 IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVF 137
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + + L D+ P + ENF LC E+G+ + G +FHR I FM Q +S
Sbjct: 18 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+GK F DE N L H+G G++SMANSGP+TNGSQFF+ L+ KH VF
Sbjct: 78 IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVF 129
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERG---------YYNGVAFHRSIRNFMIQXXX-XX 342
G + EL D+ P++CENF LC E+G +Y FHR +++FM+Q
Sbjct: 41 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 100
Query: 343 XXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTV 402
ESI+G F+DE + + H+ ++SMAN G TNGSQFFI K HL+ H V
Sbjct: 101 GNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 159
Query: 403 FXXXXXXXXXXXXMEKVPVDENDRPLEEIKI 433
F +E D +P E++I
Sbjct: 160 FGQVISGQEVVREIENQKTDAASKPFAEVRI 190
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 12/120 (10%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERG--------YYNGVAFHRSIRNFMIQXXX-XXX 343
G + +EL+ D+ P++ NF LC E G ++ G FHR I NFMIQ
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 344 XXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
ESI+G+ F DE N K H+G GV+SMAN+GP+TNGSQFF+ L+ KH VF
Sbjct: 78 NGTGGESIYGEKFPDE-NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVF 136
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERG---------YYNGVAFHRSIRNFMIQXXX-XX 342
G + EL D+ P++CENF LC E+G +Y FHR +++FM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 343 XXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTV 402
ESI+G F+DE + + H+ ++SMAN G TNGSQFFI K HL+ H V
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142
Query: 403 FXXXXXXXXXXXXMEKVPVDENDRPLEEIKI 433
F +E D +P E++I
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRI 173
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 291 HTTHGDLNIELHCDITPRSCENFITLC------ERG---YYNGVAFHRSIRNFMIQXX-X 340
++ G + EL DITPR+CENF LC RG +Y FHR I FM Q
Sbjct: 14 NSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDI 73
Query: 341 XXXXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKH 400
ESI+G+ F DE N + H G++SMAN+GP+TN SQFFI L+ KH
Sbjct: 74 TNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKH 132
Query: 401 TVFXXXXXXXXXXXXMEK 418
VF MEK
Sbjct: 133 VVFGKVIEGMNVVREMEK 150
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERG---------YYNGVAFHRSIRNFMIQXXX-XX 342
G + EL D+ P++CENF LC E+G +Y FHR +++FM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSE 83
Query: 343 XXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTV 402
ESI+G F+DE + + H+ ++SMAN G TNGSQFFI K HL+ H V
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142
Query: 403 FXXXXXXXXXXXXMEKVPVDENDRPLEEIKI 433
F +E D +P E++I
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRI 173
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 76
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGM 135
Query: 411 XXXXXMEK 418
ME+
Sbjct: 136 NIVEAMER 143
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 76
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 135
Query: 411 XXXXXMEK 418
ME+
Sbjct: 136 NIVEAMER 143
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 26 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 85
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 86 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 144
Query: 411 XXXXXMEK 418
ME+
Sbjct: 145 NIVEAMER 152
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 37 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 96
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 97 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 155
Query: 411 XXXXXMEK 418
ME+
Sbjct: 156 NIVEAMER 163
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXX-XXXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G + +EL +I PR+ ENF LC E+G+ + FHR I +F+ Q +S
Sbjct: 21 GRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQS 80
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+G F+DE N + H+G G++SMAN G +TN SQF I K A HL++KH VF
Sbjct: 81 IYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVF 132
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKS 76
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVF 128
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + +L+ DI P++ ENF LC E+G+ Y G FHR I +FM+Q +S
Sbjct: 16 GRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKS 75
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+G F DE N K H G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 76 IYGGKFPDE-NFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVF 127
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G+++MAN+GP+TNGSQFFI L+ KH VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G + I L P + ENF LC E G+ Y FHR I+NFMIQ +S
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N + H G +SMAN+GP+TNGSQFFI L+ +H VF
Sbjct: 86 IYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGM 143
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+EK + +DRP++ +KI
Sbjct: 144 DVVLRIEKTKTNSHDRPVKPVKI 166
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FH+ I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ KH VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 291 HTTHGDLNIELHCDITPRSCENFITLC------ERG---YYNGVAFHRSIRNFMIQXX-X 340
++ G + EL DITPR+CENF LC RG +Y FHR I FM Q
Sbjct: 14 NSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDI 73
Query: 341 XXXXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKH 400
ESI+G+ F DE N + H G++SMAN+GP+TN SQF I L+ KH
Sbjct: 74 TNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKH 132
Query: 401 TVFXXXXXXXXXXXXMEK 418
VF MEK
Sbjct: 133 VVFGKVIEGMNVVREMEK 150
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ H VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G + I L + P++ ENF L E G+ Y G FHR IRNFMIQ +S
Sbjct: 20 GRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKS 79
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G F DE N K+ H G VSMAN+GP++NGSQFF+ L+ +H VF
Sbjct: 80 IYGTRFDDE-NLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGM 137
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+E ND+P + +KI
Sbjct: 138 DVVKKVENTKTGLNDKPKKAVKI 160
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ H VF
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGM 136
Query: 411 XXXXXMEK 418
ME+
Sbjct: 137 NIVEAMER 144
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G + I L P + ENF LC E G+ Y FHR I+NFMIQ +S
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N + H G +SMAN+GP+TNGSQFFI L+ H VF
Sbjct: 86 IYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGM 143
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+EK + +DRP++ +KI
Sbjct: 144 DVVLRIEKTKTNSHDRPVKPVKI 166
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + +L D+ P++ NF LC E+G+ Y G FHR I +FM+Q +S
Sbjct: 16 GTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKS 75
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+G F DE N +L H+ G++SMAN+GP+TNGSQFFI + L+ KH VF
Sbjct: 76 IYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVF 127
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 291 HTTHGDLNIELHCDITPRSCENFITLC--ERGY--------YNGVAFHRSIRNFMIQXXX 340
T G + +EL D P + ENF LC E+G Y G FHR I FMIQ
Sbjct: 30 QTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGD 89
Query: 341 XXXX-XXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYK 399
ESI+G F+DE N H ++SMAN+GP+TNGSQFFI L+ K
Sbjct: 90 FTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGK 148
Query: 400 HTVFXXXXXXXXXXXXMEKVPVDENDRPLEEIKITGVTV 438
H VF +EK +N +P + + IT V
Sbjct: 149 HVVFGKVLEGMEVVKSIEKCG-SQNGKPTKSVCITASGV 186
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I FM Q +S
Sbjct: 22 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 81
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F+DE N L H+G G++SMAN+GP+TNGSQFFI L+ H VF
Sbjct: 82 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGM 140
Query: 411 XXXXXMEK 418
ME+
Sbjct: 141 NIVEAMER 148
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 295 GDLNIELHCDITPRSCENFITLCERGY---YNGVAFHRSIRNFMIQXXX-XXXXXXXXES 350
G + I L P++ NFI L ++ Y G FHR I +FMIQ S
Sbjct: 21 GRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRS 80
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFXXXXXXX 410
I+G+ F DE N KL H G G +SMAN+G TNGSQFFI L+ +H VF
Sbjct: 81 IYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGM 139
Query: 411 XXXXXMEKVPVDENDRPLEEIKI 433
+E+ DRP +++ I
Sbjct: 140 DVVRKIEQTEKLPGDRPKQDVII 162
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G ++ EL D P++ ENF L E+G+ Y G FHR I F Q +S
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKS 76
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+G+ F+DE N L H+G G++S AN+GP+TNGSQFFI L+ KH VF
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVF 128
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 277 KVEKNPKKKGYVQL-HTTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIR 332
K NP+ +++ + G + L D+ P + ENF LC E+G+ + G +FHR I
Sbjct: 8 KARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIP 67
Query: 333 NFMIQXXX-XXXXXXXXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYK 391
F Q +SI+GK F DE N L H+G G++S ANSGP+TNGSQFF+
Sbjct: 68 QFXCQGGDFTNHNGTGGKSIYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFLTCD 126
Query: 392 SATHLNYKHTVF 403
L+ KH VF
Sbjct: 127 KTDWLDGKHVVF 138
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 295 GDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQXXXXXXXXX 346
G EL +I P++ ENF C Y Y FHR I+ FMIQ
Sbjct: 74 GKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNG 133
Query: 347 XXE-SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
SI+G+ F DE N + H G++SMANSGP+TNG QFFI K L+ K+ VF
Sbjct: 134 SGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVF 190
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 291 HTTHGDLNIELHCDITPRSCENFITLCERGY---YNGVAFHRSIRNFMIQXXX-XXXXXX 346
T G + L P++ +NF LC+R Y FHR I NFMIQ
Sbjct: 18 ETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGT 77
Query: 347 XXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
SI+G F DE N H +G++SMAN+GP+TNGSQFFI + L+ KH VF
Sbjct: 78 GGRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVF 133
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V HT HGD+ I+ D P + +NF+ C G+YN FHR I FMIQ
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANS-GPHTNGSQFFILYKSATHLNY 398
+ +P K+E N+ L ++ RG ++MA + PH+ +QFFI LN+
Sbjct: 62 KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNF 110
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V HT HGD+ I+ D P + +NF+ C G+YN FHR I FMIQ
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANS-GPHTNGSQFFILYKSATHLNY 398
+ +P K+E N+ L ++ RG ++MA + PH+ +QFFI LN+
Sbjct: 62 KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNF 110
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G + +L+ + P++ +NF L + G+ Y FHR I FM+Q +S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+G+ F DE N ++ H+ G++SMAN+G +TNGSQFFI + L+ KH VF
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVF 128
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 295 GDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQXXXXXX-XXXXXES 350
G + +L+ + P++ +NF L + G+ Y FHR I FM+Q +S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVF 403
I+G+ F DE N ++ H+ G++SMAN+G +TNGSQFFI + L+ KH VF
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVF 129
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
V+LHT HG + +EL P++ ENF+ ++G+Y+G FHR I FMIQ
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY 398
+ P +E N+ L + + + PH+ +QFFI LN+
Sbjct: 66 KPT--DAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNH 114
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 347
++L T HG + ++L D P + NF + G+Y+G FHR I FMIQ
Sbjct: 2 IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEPGMKQ 61
Query: 348 XESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY 398
+ P K+E N+ L + + PH+ +QFFI K L++
Sbjct: 62 KST--RAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDH 110
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 287 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXX 346
+V L T+ G++ +EL P S +NF+ G+YN FHR I FMIQ
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ 65
Query: 347 XXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNG-SQFFILYKSATHLNYKHTVF 403
+ P K+E ++ L ++ RG ++MA + + SQFFI L++ F
Sbjct: 66 QKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 287 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXX 346
+V L T+ G++ +EL P S +NF+ G+YN FHR I FMIQ
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ 65
Query: 347 XXESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNG-SQFFILYKSATHLNYKHTVF 403
+ P K+E ++ L ++ RG ++MA + + SQFFI L++ F
Sbjct: 66 QKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,451,061
Number of Sequences: 62578
Number of extensions: 483015
Number of successful extensions: 1241
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 74
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)