Query 009461
Match_columns 534
No_of_seqs 390 out of 1698
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 13:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0883 Cyclophilin type, U bo 100.0 5E-130 1E-134 991.7 25.3 448 1-534 65-518 (518)
2 KOG0881 Cyclophilin type pepti 100.0 5.5E-51 1.2E-55 360.3 9.2 154 285-438 9-162 (164)
3 cd01923 cyclophilin_RING cyclo 100.0 5.8E-48 1.3E-52 362.4 20.2 159 287-445 1-159 (159)
4 KOG0546 HSP90 co-chaperone CPR 100.0 3.5E-48 7.7E-53 394.9 13.6 159 284-443 9-182 (372)
5 cd01921 cyclophilin_RRM cyclop 100.0 4.1E-46 8.8E-51 352.2 19.6 157 290-446 2-166 (166)
6 KOG0884 Similar to cyclophilin 100.0 9.7E-47 2.1E-51 331.6 12.6 158 287-444 2-160 (161)
7 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.2E-45 2.6E-50 348.8 15.9 157 284-441 40-204 (217)
8 KOG0882 Cyclophilin-related pe 100.0 2.9E-46 6.4E-51 386.8 12.4 152 287-438 406-557 (558)
9 cd01925 cyclophilin_CeCYP16-li 100.0 6.4E-45 1.4E-49 345.6 19.6 167 282-448 2-169 (171)
10 cd01928 Cyclophilin_PPIL3_like 100.0 6.9E-45 1.5E-49 339.6 18.3 151 288-438 3-153 (153)
11 cd01927 cyclophilin_WD40 cyclo 100.0 1.7E-44 3.7E-49 335.2 17.7 148 289-436 1-148 (148)
12 COG0652 PpiB Peptidyl-prolyl c 100.0 2.2E-44 4.7E-49 336.1 16.9 148 288-439 2-157 (158)
13 cd01922 cyclophilin_SpCYP2_lik 100.0 1E-43 2.2E-48 329.3 17.1 144 290-434 2-145 (146)
14 KOG0885 Peptidyl-prolyl cis-tr 100.0 3.3E-44 7.1E-49 364.5 13.6 174 281-454 8-182 (439)
15 KOG0879 U-snRNP-associated cyc 100.0 1E-42 2.2E-47 311.1 9.6 146 292-438 22-176 (177)
16 cd01926 cyclophilin_ABH_like c 100.0 2E-40 4.4E-45 312.7 18.3 150 286-437 3-164 (164)
17 PLN03149 peptidyl-prolyl isome 100.0 2E-40 4.3E-45 318.8 18.4 146 293-439 31-186 (186)
18 PTZ00221 cyclophilin; Provisio 100.0 3.4E-40 7.4E-45 328.3 19.7 153 293-449 65-229 (249)
19 PRK10903 peptidyl-prolyl cis-t 100.0 8.8E-40 1.9E-44 315.3 19.3 153 284-439 27-189 (190)
20 PRK10791 peptidyl-prolyl cis-t 100.0 8E-40 1.7E-44 308.8 18.5 149 288-439 2-163 (164)
21 PTZ00060 cyclophilin; Provisio 100.0 2E-39 4.3E-44 311.2 19.5 147 292-440 27-183 (183)
22 KOG0415 Predicted peptidyl pro 100.0 5E-40 1.1E-44 331.7 14.4 162 287-448 2-171 (479)
23 cd01920 cyclophilin_EcCYP_like 100.0 5.1E-39 1.1E-43 300.7 16.6 145 289-436 1-155 (155)
24 KOG0111 Cyclophilin-type pepti 100.0 9.3E-40 2E-44 312.8 10.3 145 293-439 149-297 (298)
25 cd00317 cyclophilin cyclophili 100.0 1.4E-37 3.1E-42 286.3 17.6 145 290-435 2-146 (146)
26 PF00160 Pro_isomerase: Cyclop 100.0 1.7E-36 3.7E-41 281.5 16.4 150 287-438 1-155 (155)
27 cd01924 cyclophilin_TLP40_like 100.0 2.9E-36 6.4E-41 287.6 16.2 129 291-419 3-165 (176)
28 KOG0865 Cyclophilin type pepti 100.0 5.8E-32 1.3E-36 254.5 7.2 146 292-439 15-167 (167)
29 PF04641 Rtf2: Rtf2 RING-finge 99.9 1.4E-22 3E-27 204.7 7.2 110 2-115 61-188 (260)
30 KOG3039 Uncharacterized conser 99.7 1.1E-18 2.3E-23 170.3 6.7 84 12-97 185-279 (303)
31 KOG3113 Uncharacterized conser 99.3 1.4E-12 3.1E-17 128.2 5.1 74 20-98 80-167 (293)
32 smart00504 Ubox Modified RING 98.4 2.9E-07 6.4E-12 72.7 4.5 53 37-95 1-53 (63)
33 KOG0978 E3 ubiquitin ligase in 98.1 8.6E-07 1.9E-11 99.6 0.0 55 37-96 643-697 (698)
34 KOG0320 Predicted E3 ubiquitin 98.0 2.7E-06 5.9E-11 80.8 2.7 57 35-95 129-185 (187)
35 TIGR00570 cdk7 CDK-activating 97.7 1.9E-05 4.2E-10 81.5 3.4 55 37-93 3-59 (309)
36 KOG0882 Cyclophilin-related pe 97.6 5.2E-05 1.1E-09 81.0 5.1 158 281-439 94-262 (558)
37 PLN03208 E3 ubiquitin-protein 97.6 5.8E-05 1.3E-09 73.2 4.8 59 35-97 16-88 (193)
38 PF13445 zf-RING_UBOX: RING-ty 97.6 4.7E-05 1E-09 56.8 3.1 41 40-81 1-43 (43)
39 PF04564 U-box: U-box domain; 97.5 0.00015 3.2E-09 59.8 4.8 54 36-94 3-56 (73)
40 PF13923 zf-C3HC4_2: Zinc fing 97.2 0.00052 1.1E-08 49.6 4.4 39 40-83 1-39 (39)
41 PF14634 zf-RING_5: zinc-RING 97.1 0.0003 6.6E-09 52.2 2.5 44 39-85 1-44 (44)
42 PF11789 zf-Nse: Zinc-finger o 97.1 0.00056 1.2E-08 54.0 3.8 45 37-84 11-55 (57)
43 PF13639 zf-RING_2: Ring finge 96.9 0.0011 2.3E-08 49.1 3.3 42 39-83 2-43 (44)
44 KOG2164 Predicted E3 ubiquitin 96.8 0.00053 1.2E-08 74.6 2.1 69 20-96 173-244 (513)
45 KOG0317 Predicted E3 ubiquitin 96.8 0.00078 1.7E-08 68.7 3.1 56 35-96 237-292 (293)
46 TIGR00599 rad18 DNA repair pro 96.8 0.00084 1.8E-08 72.1 3.1 50 35-90 24-73 (397)
47 PF13920 zf-C3HC4_3: Zinc fing 96.8 0.0023 5E-08 48.6 4.5 46 37-88 2-48 (50)
48 TIGR03268 methan_mark_3 putati 96.5 0.009 1.9E-07 65.2 8.2 100 297-417 203-302 (503)
49 PF00097 zf-C3HC4: Zinc finger 96.4 0.0049 1.1E-07 44.5 4.1 41 40-83 1-41 (41)
50 PRK00969 hypothetical protein; 96.3 0.01 2.2E-07 65.0 7.9 100 297-417 206-305 (508)
51 KOG0826 Predicted E3 ubiquitin 96.3 0.0016 3.4E-08 67.5 1.3 57 37-98 300-356 (357)
52 PF15227 zf-C3HC4_4: zinc fing 96.1 0.008 1.7E-07 44.4 4.0 40 40-83 1-42 (42)
53 cd00162 RING RING-finger (Real 96.0 0.0073 1.6E-07 43.1 3.2 44 39-86 1-44 (45)
54 KOG0823 Predicted E3 ubiquitin 95.7 0.012 2.7E-07 58.5 4.5 59 34-96 44-103 (230)
55 COG5574 PEX10 RING-finger-cont 95.5 0.0069 1.5E-07 61.3 2.1 57 35-95 213-269 (271)
56 PHA02929 N1R/p28-like protein; 95.5 0.0096 2.1E-07 60.0 2.9 50 37-88 174-227 (238)
57 COG4070 Predicted peptidyl-pro 95.0 0.045 9.8E-07 58.2 6.1 98 296-418 204-305 (512)
58 smart00184 RING Ring finger. E 94.1 0.037 8E-07 37.9 2.1 39 40-83 1-39 (39)
59 COG5109 Uncharacterized conser 93.9 0.039 8.5E-07 57.1 2.7 58 37-95 336-394 (396)
60 PRK00969 hypothetical protein; 93.8 0.4 8.6E-06 52.9 10.3 117 285-419 50-168 (508)
61 KOG2879 Predicted E3 ubiquitin 93.6 0.053 1.1E-06 55.3 3.0 49 37-88 239-287 (298)
62 PF12903 DUF3830: Protein of u 93.2 0.17 3.7E-06 47.5 5.5 107 295-418 8-130 (147)
63 PHA02926 zinc finger-like prot 93.2 0.04 8.6E-07 54.8 1.4 52 37-88 170-230 (242)
64 KOG3800 Predicted E3 ubiquitin 92.8 0.069 1.5E-06 54.8 2.5 53 39-93 2-56 (300)
65 TIGR03268 methan_mark_3 putati 92.8 0.8 1.7E-05 50.5 10.7 114 285-418 46-164 (503)
66 KOG2817 Predicted E3 ubiquitin 92.6 0.081 1.8E-06 56.5 2.7 55 37-92 334-389 (394)
67 KOG2177 Predicted E3 ubiquitin 91.6 0.081 1.8E-06 52.0 1.3 44 35-84 11-54 (386)
68 smart00504 Ubox Modified RING 90.4 0.14 3E-06 40.1 1.3 29 2-30 27-55 (63)
69 COG4070 Predicted peptidyl-pro 90.4 0.79 1.7E-05 49.1 7.2 22 296-317 377-398 (512)
70 PF12678 zf-rbx1: RING-H2 zinc 89.7 0.52 1.1E-05 38.9 4.3 43 39-83 21-72 (73)
71 KOG0287 Postreplication repair 89.2 0.15 3.2E-06 53.5 0.8 49 37-92 23-72 (442)
72 PF10367 Vps39_2: Vacuolar sor 89.0 0.19 4.2E-06 43.3 1.3 31 37-69 78-108 (109)
73 COG5222 Uncharacterized conser 88.7 0.21 4.6E-06 51.5 1.5 48 38-93 275-322 (427)
74 PF14835 zf-RING_6: zf-RING of 88.6 0.15 3.3E-06 41.3 0.4 49 38-93 8-56 (65)
75 COG5540 RING-finger-containing 88.5 0.4 8.6E-06 49.7 3.3 49 37-87 323-371 (374)
76 PF02891 zf-MIZ: MIZ/SP-RING z 87.6 0.59 1.3E-05 35.9 3.0 46 38-86 3-50 (50)
77 KOG0289 mRNA splicing factor [ 86.5 0.52 1.1E-05 51.0 2.9 63 38-105 1-63 (506)
78 KOG0289 mRNA splicing factor [ 84.8 0.33 7E-06 52.5 0.5 29 3-31 28-56 (506)
79 KOG0827 Predicted E3 ubiquitin 83.2 0.77 1.7E-05 49.1 2.4 77 37-124 4-81 (465)
80 KOG1645 RING-finger-containing 83.0 0.48 1E-05 50.9 0.8 57 38-95 5-63 (463)
81 PF14447 Prok-RING_4: Prokaryo 82.7 0.6 1.3E-05 36.7 1.0 34 55-92 21-54 (55)
82 PF14446 Prok-RING_1: Prokaryo 82.2 1 2.2E-05 35.3 2.2 47 37-89 5-53 (54)
83 COG5152 Uncharacterized conser 79.8 0.7 1.5E-05 45.3 0.6 45 37-87 196-240 (259)
84 PF04564 U-box: U-box domain; 78.6 0.78 1.7E-05 37.7 0.5 28 2-29 30-58 (73)
85 COG5432 RAD18 RING-finger-cont 78.5 1.1 2.4E-05 46.3 1.6 47 37-89 25-71 (391)
86 KOG2462 C2H2-type Zn-finger pr 77.0 2.2 4.7E-05 43.9 3.2 55 35-89 128-199 (279)
87 cd00350 rubredoxin_like Rubred 75.7 1.9 4.2E-05 30.1 1.7 11 76-86 16-26 (33)
88 KOG0824 Predicted E3 ubiquitin 74.8 1.4 3.1E-05 45.7 1.2 50 38-93 8-57 (324)
89 KOG1814 Predicted E3 ubiquitin 74.2 1.7 3.7E-05 46.9 1.7 35 36-71 183-217 (445)
90 KOG0311 Predicted E3 ubiquitin 72.7 0.56 1.2E-05 49.6 -2.3 49 36-88 42-90 (381)
91 KOG4739 Uncharacterized protei 72.5 1.5 3.3E-05 44.1 0.8 44 38-87 4-47 (233)
92 KOG2979 Protein involved in DN 72.0 1.9 4.1E-05 43.9 1.3 54 37-97 176-229 (262)
93 PRK06266 transcription initiat 70.6 2.4 5.1E-05 41.1 1.6 33 36-89 116-148 (178)
94 PF14353 CpXC: CpXC protein 70.3 5.3 0.00011 36.1 3.7 57 38-100 2-61 (128)
95 KOG2169 Zn-finger transcriptio 69.6 2.6 5.7E-05 48.4 2.0 58 37-97 306-365 (636)
96 KOG0825 PHD Zn-finger protein 69.5 1.2 2.6E-05 51.4 -0.7 51 38-91 124-174 (1134)
97 TIGR00373 conserved hypothetic 67.3 2.8 6.1E-05 39.7 1.3 33 36-89 108-140 (158)
98 COG5175 MOT2 Transcriptional r 65.5 3.1 6.7E-05 43.9 1.3 52 36-92 14-68 (480)
99 PHA02768 hypothetical protein; 64.7 6.5 0.00014 31.1 2.7 41 37-91 5-45 (55)
100 KOG2932 E3 ubiquitin ligase in 64.3 2.4 5.2E-05 44.2 0.3 44 39-89 92-135 (389)
101 KOG1002 Nucleotide excision re 63.3 3.4 7.4E-05 45.9 1.2 56 30-89 529-587 (791)
102 COG5189 SFP1 Putative transcri 63.1 1.6 3.5E-05 45.7 -1.3 53 37-89 349-410 (423)
103 smart00531 TFIIE Transcription 62.9 4.8 0.0001 37.5 2.0 38 36-89 98-135 (147)
104 PF09986 DUF2225: Uncharacteri 62.0 4.1 8.9E-05 40.5 1.4 54 37-94 5-65 (214)
105 PF04126 Cyclophil_like: Cyclo 61.6 54 0.0012 29.6 8.5 99 288-418 3-113 (120)
106 COG1592 Rubrerythrin [Energy p 60.3 4.9 0.00011 38.6 1.5 9 78-86 150-158 (166)
107 KOG4628 Predicted E3 ubiquitin 59.0 7.5 0.00016 41.5 2.8 62 22-85 212-275 (348)
108 KOG1001 Helicase-like transcri 57.8 2.4 5.3E-05 49.0 -1.1 52 38-94 455-506 (674)
109 KOG0802 E3 ubiquitin ligase [P 56.5 6 0.00013 44.6 1.7 58 37-96 291-349 (543)
110 KOG2593 Transcription initiati 54.4 7.3 0.00016 42.5 1.8 39 36-89 127-165 (436)
111 KOG1940 Zn-finger protein [Gen 53.0 6.9 0.00015 40.5 1.3 54 30-85 151-204 (276)
112 COG5220 TFB3 Cdk activating ki 52.0 4 8.7E-05 41.3 -0.5 52 37-89 10-65 (314)
113 PF10915 DUF2709: Protein of u 51.6 5.9 0.00013 38.8 0.5 16 37-52 87-102 (238)
114 PRK00464 nrdR transcriptional 51.3 8.1 0.00017 36.7 1.4 42 38-91 1-42 (154)
115 PF05605 zf-Di19: Drought indu 51.1 5.2 0.00011 30.8 0.1 41 37-88 2-42 (54)
116 PF13894 zf-C2H2_4: C2H2-type 49.4 7.2 0.00016 23.8 0.5 13 38-50 1-13 (24)
117 KOG4159 Predicted E3 ubiquitin 47.6 11 0.00024 41.0 1.9 48 36-89 83-130 (398)
118 KOG1813 Predicted E3 ubiquitin 47.5 8.3 0.00018 40.1 0.9 45 37-87 241-285 (313)
119 cd00730 rubredoxin Rubredoxin; 46.8 9.9 0.00021 29.4 1.0 43 37-86 1-43 (50)
120 smart00064 FYVE Protein presen 45.9 9.7 0.00021 30.3 0.9 33 38-70 11-43 (68)
121 PF00096 zf-C2H2: Zinc finger, 45.8 8.6 0.00019 23.9 0.5 13 38-50 1-13 (23)
122 KOG3002 Zn finger protein [Gen 43.9 18 0.0004 37.9 2.8 43 38-88 49-91 (299)
123 KOG3161 Predicted E3 ubiquitin 43.4 7.4 0.00016 44.3 -0.2 54 38-100 12-65 (861)
124 COG5194 APC11 Component of SCF 42.5 28 0.0006 29.7 3.1 54 39-100 33-87 (88)
125 PF14446 Prok-RING_1: Prokaryo 41.2 16 0.00036 28.7 1.5 18 78-95 6-23 (54)
126 PF07191 zinc-ribbons_6: zinc- 40.1 7.4 0.00016 32.2 -0.6 40 38-88 2-41 (70)
127 PF04710 Pellino: Pellino; In 38.2 11 0.00023 40.9 0.0 61 37-99 328-415 (416)
128 COG5243 HRD1 HRD ubiquitin lig 38.1 23 0.00051 38.1 2.5 50 35-86 285-343 (491)
129 KOG0396 Uncharacterized conser 38.0 10 0.00022 40.7 -0.2 63 29-93 322-384 (389)
130 PF10537 WAC_Acf1_DNA_bd: ATP- 37.3 25 0.00054 31.1 2.2 35 37-85 3-38 (102)
131 PF03854 zf-P11: P-11 zinc fin 37.1 41 0.0009 25.9 3.0 46 36-88 1-46 (50)
132 PF12861 zf-Apc11: Anaphase-pr 36.7 43 0.00092 28.8 3.4 37 54-90 47-84 (85)
133 KOG0297 TNF receptor-associate 36.2 18 0.00039 39.2 1.4 54 35-93 19-72 (391)
134 PF13465 zf-H2C2_2: Zinc-finge 35.5 16 0.00036 23.9 0.6 14 36-49 13-26 (26)
135 TIGR03831 YgiT_finger YgiT-typ 35.4 22 0.00048 25.7 1.3 41 40-87 1-42 (46)
136 TIGR03830 CxxCG_CxxCG_HTH puta 35.4 15 0.00032 32.6 0.4 41 40-88 1-42 (127)
137 COG1645 Uncharacterized Zn-fin 35.0 16 0.00035 33.8 0.6 20 37-64 28-47 (131)
138 PF12171 zf-C2H2_jaz: Zinc-fin 34.9 22 0.00047 23.3 1.1 13 38-50 2-14 (27)
139 PLN02189 cellulose synthase 34.8 30 0.00064 42.0 2.9 52 37-89 34-88 (1040)
140 PF04423 Rad50_zn_hook: Rad50 34.2 16 0.00035 28.1 0.4 11 79-89 22-32 (54)
141 KOG1785 Tyrosine kinase negati 32.9 22 0.00047 38.6 1.3 51 39-93 371-421 (563)
142 COG2093 DNA-directed RNA polym 32.6 28 0.0006 28.3 1.5 22 79-100 20-44 (64)
143 KOG3993 Transcription factor ( 31.8 9.4 0.0002 41.6 -1.6 78 6-103 231-313 (500)
144 cd00065 FYVE FYVE domain; Zinc 31.0 23 0.00049 27.0 0.8 34 38-71 3-36 (57)
145 PLN02195 cellulose synthase A 31.0 45 0.00098 40.2 3.6 56 37-93 6-64 (977)
146 KOG4692 Predicted E3 ubiquitin 30.8 26 0.00056 37.5 1.4 42 37-85 422-464 (489)
147 PF13132 DUF3950: Domain of un 30.7 11 0.00024 26.0 -0.8 7 528-534 14-20 (30)
148 KOG2462 C2H2-type Zn-finger pr 30.6 28 0.0006 36.0 1.6 65 13-89 190-255 (279)
149 PF08793 2C_adapt: 2-cysteine 30.1 33 0.00072 24.9 1.5 20 6-25 6-25 (37)
150 PF12874 zf-met: Zinc-finger o 30.1 21 0.00046 22.5 0.5 13 38-50 1-13 (25)
151 KOG0804 Cytoplasmic Zn-finger 30.1 31 0.00067 38.0 1.9 33 38-70 176-208 (493)
152 COG5236 Uncharacterized conser 29.9 82 0.0018 33.8 4.9 67 36-109 60-126 (493)
153 cd00729 rubredoxin_SM Rubredox 28.7 36 0.00079 24.0 1.5 8 79-86 20-27 (34)
154 PF00301 Rubredoxin: Rubredoxi 27.2 19 0.00042 27.4 -0.2 12 75-86 32-43 (47)
155 PF10571 UPF0547: Uncharacteri 27.1 24 0.00051 23.6 0.3 11 39-49 2-12 (26)
156 COG2174 RPL34A Ribosomal prote 26.8 64 0.0014 28.1 2.9 47 28-74 25-84 (93)
157 COG4338 Uncharacterized protei 26.5 20 0.00044 27.6 -0.2 12 37-48 12-23 (54)
158 PF06906 DUF1272: Protein of u 26.1 81 0.0017 25.1 3.1 48 39-90 7-54 (57)
159 PF01363 FYVE: FYVE zinc finge 25.7 25 0.00054 28.0 0.2 34 37-70 9-42 (69)
160 PF04641 Rtf2: Rtf2 RING-finge 25.4 1.1E+02 0.0025 31.1 5.0 58 38-100 35-96 (260)
161 KOG2660 Locus-specific chromos 25.3 19 0.00041 38.1 -0.7 43 38-85 16-58 (331)
162 PHA00733 hypothetical protein 25.1 57 0.0012 29.9 2.4 15 77-91 99-113 (128)
163 PF05191 ADK_lid: Adenylate ki 25.0 22 0.00049 25.5 -0.2 13 75-87 19-31 (36)
164 KOG0828 Predicted E3 ubiquitin 24.5 35 0.00076 38.1 1.1 49 38-87 572-633 (636)
165 PF09538 FYDLN_acid: Protein o 24.5 27 0.00058 31.3 0.2 13 37-49 9-21 (108)
166 PRK05452 anaerobic nitric oxid 24.3 34 0.00074 38.1 1.0 45 35-86 423-467 (479)
167 smart00451 ZnF_U1 U1-like zinc 24.3 36 0.00078 23.2 0.8 15 36-50 2-16 (35)
168 TIGR02300 FYDLN_acid conserved 24.2 27 0.00058 32.2 0.1 13 37-49 9-21 (129)
169 smart00744 RINGv The RING-vari 24.2 86 0.0019 23.8 2.9 44 39-84 1-49 (49)
170 COG5533 UBP5 Ubiquitin C-termi 23.9 62 0.0013 34.4 2.7 58 37-94 235-301 (415)
171 PTZ00303 phosphatidylinositol 23.3 33 0.00072 40.2 0.7 33 38-70 461-498 (1374)
172 PLN02436 cellulose synthase A 23.2 60 0.0013 39.6 2.7 52 37-89 36-90 (1094)
173 PRK08351 DNA-directed RNA poly 22.4 61 0.0013 26.2 1.9 22 79-100 17-41 (61)
174 KOG3623 Homeobox transcription 22.0 17 0.00037 42.2 -1.8 59 31-89 888-962 (1007)
175 KOG2034 Vacuolar sorting prote 21.9 44 0.00096 39.7 1.3 33 39-73 819-851 (911)
176 KOG0883 Cyclophilin type, U bo 21.9 84 0.0018 34.3 3.2 78 27-112 32-117 (518)
177 COG1997 RPL43A Ribosomal prote 21.8 58 0.0013 28.2 1.7 11 36-46 34-44 (89)
178 COG1548 Predicted transcriptio 21.4 46 0.001 34.5 1.2 59 55-115 93-165 (330)
179 COG1645 Uncharacterized Zn-fin 21.1 52 0.0011 30.5 1.4 26 11-47 29-54 (131)
180 PRK12496 hypothetical protein; 21.1 53 0.0012 31.3 1.5 12 79-90 145-156 (164)
181 KOG1734 Predicted RING-contain 21.0 32 0.00069 35.6 -0.0 51 37-87 224-280 (328)
182 PF10013 DUF2256: Uncharacteri 20.6 49 0.0011 24.8 0.9 14 73-88 6-19 (42)
183 PRK11595 DNA utilization prote 20.4 81 0.0017 31.4 2.7 39 39-88 7-45 (227)
No 1
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-130 Score=991.68 Aligned_cols=448 Identities=58% Similarity=0.909 Sum_probs=396.5
Q ss_pred CCcchhhhhcCCCCCCCCccCCCCceeEEeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCccc
Q 009461 1 MSITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKE 80 (534)
Q Consensus 1 ~~i~p~i~k~~~~Pvtg~pl~lKDLi~l~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~c 80 (534)
++|||||+|||+||+||+||+.+|||+|+|++|++++|||||++|+||+++|||+++++||||||++|+|||++.++|+|
T Consensus 65 ~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~F~Kns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkd 144 (518)
T KOG0883|consen 65 TAIVPWLKKHGTNPITGQKLDGKDLIKLKFHKNSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKD 144 (518)
T ss_pred ehhhHHHHHcCCCCCCCCccccccceeeeeccCCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCcEEecCCCCCCccccccchhhhcCCCcChHHHhhhcCCCC-ccc-ccchhHHHHHHHhccccccccccc
Q 009461 81 LLTDEPFTKEDLITIQNPNALDTKVTLEFDHVKKGLKVDDEELRKMESDPT-YNI-NVAGDIKQMLQELGTEKGQETALL 158 (534)
Q Consensus 81 lv~~~~f~~~DiI~LqDP~n~~~r~~~~f~~vk~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~il~~~~~~~~~~~~~~ 158 (534)
|++++||+|.|||+||||+|++++++++|+|||+++++.++++++++.||. ..+ ++|-+++..|.+|.+++..
T Consensus 145 LltdepFtR~DiItiQdP~~lek~~~~~F~hvk~~lk~~~eeek~~~~dpa~~~~k~~n~e~ks~l~el~k~~~p----- 219 (518)
T KOG0883|consen 145 LLTDEPFTRADIITIQDPNNLEKFNMSDFYHVKKNLKTADEEEKKAKKDPALGYIKAMNLETKSTLPELSKEYQP----- 219 (518)
T ss_pred hhccCCcchhceeeecCcchhhccchhhHHHHhcccccCcHHHHHhhcCchhhhhhhcchhhhhhhHHHhhhhcc-----
Confidence 999999999999999999999999999999999999999998888999998 455 7888999999999987631
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhhhhccccccccccccccccchhcccccccccCcccccccccchHHHHHHHHHhhcC
Q 009461 159 GGGGSKAQKERAAALAAILAARSRIEENSKSDANGEAKATKAFSIVDAASASVHGRSASAAKTASSDKTAARIAMHMAGE 238 (534)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (534)
++.. ++..++
T Consensus 220 ---------------~~~~-------------------------------a~t~~~------------------------ 229 (518)
T KOG0883|consen 220 ---------------KKSI-------------------------------ASTMKR------------------------ 229 (518)
T ss_pred ---------------chhh-------------------------------hhhccc------------------------
Confidence 0000 000011
Q ss_pred CCccccccccccccCCCcccccccccCCCCCchhhhhhhhh----cCCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHH
Q 009461 239 RTPVNAKLVKSRYTTGAASRSFTSTAYDPVTTNEFEYIKVE----KNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFI 314 (534)
Q Consensus 239 ~~~~~~~~~~~~~stg~~~~s~tst~~~p~t~~~~~~~~~~----~~~k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~ 314 (534)
..+++++||||||.+|+|||||+|+|+|.++++.++.+ .++++++||+|+|+.|.|+||||||.+|++|+||+
T Consensus 230 ---~aD~~naahyStG~vaasfTSTam~PvT~neaaiid~d~~ry~rvKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI 306 (518)
T KOG0883|consen 230 ---SADKINAAHYSTGAVAASFTSTAMTPVTKNEAAIIDEDDVRYTRVKKKGYVRLVTNHGPLNLELHCDYAPRACENFI 306 (518)
T ss_pred ---cchhhhhhhccccceeceeccceeeecccchhhhccchhhhhccccccceEEEeccCCceeeEeecCcchHHHHHHH
Confidence 12456799999999999999999999999999998876 68999999999999999999999999999999999
Q ss_pred HHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCC
Q 009461 315 TLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSAT 394 (534)
Q Consensus 315 ~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p 394 (534)
.||+.|||+|+.|||.|+|||||||||+|+|.||+||||.+|.|||.+.|.|++||+|||||+|||||||||||++++|.
T Consensus 307 ~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsck 386 (518)
T KOG0883|consen 307 TLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCK 386 (518)
T ss_pred HHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEeCCCCCCChhHHHHHHhhhhccccccccccCCccc
Q 009461 395 HLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVNPYSEPDEEEEEEKAKDEKNAEDEDKDKVGSWYS 474 (534)
Q Consensus 395 ~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (534)
|||++||||||||+|+++|.+||.+++++.++|+.+|+|.++.||+|||+|.+.+.++|+++. .+.++++..+.++ +
T Consensus 387 hLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfeEa~~e~~kEr~e~-~k~~~e~~~k~~s--~ 463 (518)
T KOG0883|consen 387 HLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFEEADKEREKERAER-LKEEEEDNLKRTS--S 463 (518)
T ss_pred hccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHHHHHHHHHHHHHHH-hhccchhhhhhhc--c
Confidence 999999999999999999999999999999999999999999999999999999766666553 3333444455555 6
Q ss_pred CCCCCCCCCccccccccccccccCCCCCCCCCCCCchhhhhhhcccccccCCCCCCCCCC
Q 009461 475 NPGTGTQAGAVGGGGVGKYLKARSAPIDSAADDGGLTAIATAKKRKVGVSAGEFKDFSGW 534 (534)
Q Consensus 475 ~~~~~~~~~~~~~~gVgkyl~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~fg~f~~w 534 (534)
+|.+++..+.+++.||||||++.++.......-...+. .++|++...||||||+|
T Consensus 464 ~~~~~s~~~~~~~~gVGKYlk~~~s~~~~~~~~tt~~v-----~~~kKk~~~GfgdFssW 518 (518)
T KOG0883|consen 464 QPKSGSTTPHALGAGVGKYLKKAASLEKKEFPMTTATV-----NKKKKKAATGFGDFSSW 518 (518)
T ss_pred CccccCCCcccccccHHHHHHHHhhhhcccCCcccccc-----chhcccccccccCcccC
Confidence 77788888899999999999987543322211111111 23333446899999999
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-51 Score=360.27 Aligned_cols=154 Identities=52% Similarity=0.924 Sum_probs=150.8
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccc
Q 009461 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 364 (534)
Q Consensus 285 k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 364 (534)
..+|.|+|++|.|+||||-..||+||.||..|++.|||+|+.|||||++||||||||+|+|+||.||||..|.||++..|
T Consensus 9 ~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dL 88 (164)
T KOG0881|consen 9 PPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDL 88 (164)
T ss_pred CCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEE
Q 009461 365 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 438 (534)
Q Consensus 365 ~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~V 438 (534)
+|.+.|+|||||.|||+|||||||||.+.+||||+||+||||+.||+|+.+|..+.+|..+||+.+++|..+.+
T Consensus 89 khTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 89 KHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred cccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
No 3
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=5.8e-48 Score=362.40 Aligned_cols=159 Identities=72% Similarity=1.262 Sum_probs=155.5
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccC
Q 009461 287 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 366 (534)
Q Consensus 287 ~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h 366 (534)
||+|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.++.++||.+|++|++..+.|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEeCCCCC
Q 009461 367 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVNPYSE 445 (534)
Q Consensus 367 ~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dPf~~ 445 (534)
+++|+|+||+.++++++||||||+.++||||++|+|||||++||++|++|+.++++.+++|+.+|+|.+|.|+.|||++
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~~ 159 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFEE 159 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999989999999999999999999985
No 4
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-48 Score=394.90 Aligned_cols=159 Identities=43% Similarity=0.763 Sum_probs=149.5
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc--c---------ccCCcEEEEeecCcEEeecCCC-CCCCCC
Q 009461 284 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--G---------YYNGVAFHRSIRNFMIQGGDPT-GTGRGG 348 (534)
Q Consensus 284 ~k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~~--g---------~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg 348 (534)
+..|..|. -+.|||+||||.|.||+||+||+.||.+ | .|.|+.|||||++|||||||++ |+|+||
T Consensus 9 pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGG 88 (372)
T KOG0546|consen 9 PRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGG 88 (372)
T ss_pred ceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCc
Confidence 45566665 4789999999999999999999999953 3 3999999999999999999999 999999
Q ss_pred CccCCCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 009461 349 ESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 428 (534)
Q Consensus 349 ~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~ 428 (534)
+||||..|.|| ++.|+|+++++|||||.||||||||||||+.++|||||+|+|||+||.|++||+.||.+.||..++|+
T Consensus 89 eSIYG~~FdDE-nF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 89 ESIYGEKFDDE-NFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred ccccccccccc-cceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEeCCC
Q 009461 429 EEIKITGVTVFVNPY 443 (534)
Q Consensus 429 ~~I~I~~~~Vl~dPf 443 (534)
.+|+|.+|++|+.-.
T Consensus 168 ~dV~I~dCGel~~~~ 182 (372)
T KOG0546|consen 168 ADVVISDCGELVKKS 182 (372)
T ss_pred cceEecccccccccc
Confidence 999999999998653
No 5
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=4.1e-46 Score=352.16 Aligned_cols=157 Identities=45% Similarity=0.768 Sum_probs=150.0
Q ss_pred EEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCC-------CCCCCccCc
Q 009461 290 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWG-------KPFKDEVNS 362 (534)
Q Consensus 290 l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g-------~~f~dE~~~ 362 (534)
|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+.++|.++.++|+ ..|.+|+.+
T Consensus 2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~~ 81 (166)
T cd01921 2 LETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEILP 81 (166)
T ss_pred cEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999886 368888778
Q ss_pred cccCCcceEEEEeccCCCCCCccEEEeccC-CCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEeC
Q 009461 363 KLLHSGRGVVSMANSGPHTNGSQFFILYKS-ATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVN 441 (534)
Q Consensus 363 ~l~h~~rG~lsman~g~ntngSQFFItl~~-~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~d 441 (534)
.+.|+.+|+|+||+.++++++||||||+.+ +|+||++|+|||||++|||||++|+.++++.+++|..+|+|.+|+|+.|
T Consensus 82 ~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~~ 161 (166)
T cd01921 82 LLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDD 161 (166)
T ss_pred ccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEECC
Confidence 899999999999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009461 442 PYSEP 446 (534)
Q Consensus 442 Pf~~~ 446 (534)
||+++
T Consensus 162 pf~~~ 166 (166)
T cd01921 162 PFPDP 166 (166)
T ss_pred CCCCC
Confidence 99874
No 6
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-47 Score=331.61 Aligned_cols=158 Identities=57% Similarity=1.042 Sum_probs=155.0
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccC
Q 009461 287 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 366 (534)
Q Consensus 287 ~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h 366 (534)
.|.|+|..|+|.||||++.+|++|+||+.||...||++|+|||.+++||+|.|||+.+|+||.||||.+|+||+...|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC-CCCccceEEEEEEEEeCCCC
Q 009461 367 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLEEIKITGVTVFVNPYS 444 (534)
Q Consensus 367 ~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~-~rP~~~I~I~~~~Vl~dPf~ 444 (534)
+.||+|||||.|||+|+||||||++..||||-+|||||+|++|+|+|+.|+.+++++. .||+.++.|.+++|-.+||.
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp~a 160 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA 160 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecCcCC
Confidence 9999999999999999999999999999999999999999999999999999999985 89999999999999999995
No 7
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=348.76 Aligned_cols=157 Identities=46% Similarity=0.773 Sum_probs=146.2
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc---cc-cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCC
Q 009461 284 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER---GY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKP 355 (534)
Q Consensus 284 ~k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~~---g~-Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~ 355 (534)
.+.|..|+ -..|||+|+||+..+|+||+||++||.. || |.|+.||||||||||||||++ |+|+||.||||..
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~ 119 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEK 119 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCC
Confidence 34444444 5679999999999999999999999973 44 999999999999999999998 7799999999999
Q ss_pred CCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEE
Q 009461 356 FKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITG 435 (534)
Q Consensus 356 f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~ 435 (534)
|+|| |+.|+|+++|.|||||.|||+||||||||+..++||||+|+|||+|++||++|.+|+.++||..++|+++++|.+
T Consensus 120 F~DE-Nf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~ 198 (217)
T KOG0880|consen 120 FPDE-NFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIAN 198 (217)
T ss_pred CCCc-cceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEee
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC
Q 009461 436 VTVFVN 441 (534)
Q Consensus 436 ~~Vl~d 441 (534)
|+-+.-
T Consensus 199 ~g~l~~ 204 (217)
T KOG0880|consen 199 CGELPV 204 (217)
T ss_pred cCcccc
Confidence 997643
No 8
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-46 Score=386.84 Aligned_cols=152 Identities=49% Similarity=0.836 Sum_probs=149.8
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccC
Q 009461 287 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 366 (534)
Q Consensus 287 ~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h 366 (534)
-+.|+|++|+|.|.||++.||+||+||-..|++|||||..|||||+|||||+|||.|+|+||+||||..|+|||++.|+|
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lrh 485 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLRH 485 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEE
Q 009461 367 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 438 (534)
Q Consensus 367 ~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~V 438 (534)
+++-.|||||+||||||||||||..++||||++|||||||+.||+||++|+++.|+..+||.++|.|.++.|
T Consensus 486 drpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 486 DRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred CCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
No 9
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=6.4e-45 Score=345.63 Aligned_cols=167 Identities=50% Similarity=0.880 Sum_probs=159.2
Q ss_pred CCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccC
Q 009461 282 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN 361 (534)
Q Consensus 282 ~k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~ 361 (534)
+.+.+.|.|+|+.|+|+||||++.+|+||+||+.||+.|||+|+.||||+++|||||||+.++|.|+.++||.+|++|.+
T Consensus 2 ~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~ 81 (171)
T cd01925 2 PPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFH 81 (171)
T ss_pred CCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEc-ChHHHHHHhcCCCCCCCCCccceEEEEEEEEe
Q 009461 362 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG-GLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 440 (534)
Q Consensus 362 ~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVve-GmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 440 (534)
..+.|+++|+|+||+.|+++++|||||++.++|+||++|+|||+|++ +|++|++|+.++++.+++|..+|+|.+|+|+.
T Consensus 82 ~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 82 SRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred cCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 88899999999999999999999999999999999999999999994 68889999999999999999999999999999
Q ss_pred CCCCCCCh
Q 009461 441 NPYSEPDE 448 (534)
Q Consensus 441 dPf~~~~~ 448 (534)
|||+++..
T Consensus 162 ~pf~~~~~ 169 (171)
T cd01925 162 NPFDDIVP 169 (171)
T ss_pred CCchhhcc
Confidence 99988753
No 10
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.9e-45 Score=339.61 Aligned_cols=151 Identities=62% Similarity=1.108 Sum_probs=146.7
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCC
Q 009461 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHS 367 (534)
Q Consensus 288 V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~ 367 (534)
|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++||||||||.++|.++.++||.+|++|+...+.|+
T Consensus 3 v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~~ 82 (153)
T cd01928 3 VTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKHD 82 (153)
T ss_pred EEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999987788999
Q ss_pred cceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEE
Q 009461 368 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 438 (534)
Q Consensus 368 ~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~V 438 (534)
++|+|+||+.++++++|||||++.++|+||++|+|||||++|||||++|++++++.+++|..+|+|.+|+|
T Consensus 83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 99999999999999999999999999999999999999999999999999999998999999999999864
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.7e-44 Score=335.21 Aligned_cols=148 Identities=53% Similarity=0.894 Sum_probs=143.3
Q ss_pred EEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCCc
Q 009461 289 QLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSG 368 (534)
Q Consensus 289 ~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~ 368 (534)
.|+|+.|+|+||||++.||++|+||+.||+.|||+|+.||||+++|||||||+.++|.|+.++|+..|++|+.+.+.|++
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred ceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEE
Q 009461 369 RGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGV 436 (534)
Q Consensus 369 rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~ 436 (534)
+|+|+||+.++++++|||||++.++|+||++|+|||+|++|||||++|++++++.+++|..+|+|.++
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999989999999999864
No 12
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-44 Score=336.06 Aligned_cols=148 Identities=47% Similarity=0.794 Sum_probs=136.2
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCC-CCCCCccCCCCCCCccCccccC
Q 009461 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGT-GRGGESIWGKPFKDEVNSKLLH 366 (534)
Q Consensus 288 V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~-g~gg~si~g~~f~dE~~~~l~h 366 (534)
|.++|+.|+|+|+||++.||+||+||+.||+.|||+|+.|||||++||||||||+++ |.||+ +.+|++|+ ..+.|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~-~~~~~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDEN-FALNG 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccc-ccccc
Confidence 679999999999999999999999999999999999999999999999999999977 88888 59999994 44555
Q ss_pred Cc--ceEEEEeccC-CCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC----CCCccceEEEEEEEE
Q 009461 367 SG--RGVVSMANSG-PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN----DRPLEEIKITGVTVF 439 (534)
Q Consensus 367 ~~--rG~lsman~g-~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~----~rP~~~I~I~~~~Vl 439 (534)
++ ||+|||||.| ||+|+|||||++.+.||||++|+|||+|++|||||++|+++.+... +.|..+++|..+.++
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 55 9999999999 9999999999999999999999999999999999999999888753 567788999887765
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1e-43 Score=329.35 Aligned_cols=144 Identities=53% Similarity=0.990 Sum_probs=140.4
Q ss_pred EEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCCcc
Q 009461 290 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGR 369 (534)
Q Consensus 290 l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~r 369 (534)
|+|+.|+|+||||++.||++|+||++||+.|||+++.||||+++|||||||+.++|.++.++||.+|++|+...++|+++
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~~ 81 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTGA 81 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred eEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEE
Q 009461 370 GVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKIT 434 (534)
Q Consensus 370 G~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~ 434 (534)
|+|+|++.++++++|||||++.++|+||++|+|||+|++|||||++|++++++ +++|..+|+|.
T Consensus 82 G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 82 GILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred eEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999998 88999999996
No 14
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-44 Score=364.55 Aligned_cols=174 Identities=45% Similarity=0.866 Sum_probs=166.1
Q ss_pred CCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCcc
Q 009461 281 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEV 360 (534)
Q Consensus 281 ~~k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~ 360 (534)
-|...+.|.|.|+.|+|.||||+..||++|.||++||..|||+|+.|||++|||++|||||+|+|+||+||||.+|.+|+
T Consensus 8 EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~ 87 (439)
T KOG0885|consen 8 EPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEF 87 (439)
T ss_pred CCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEc-ChHHHHHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 361 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG-GLTTLAAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 361 ~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVve-GmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
+++|++.+||+|+|||.|.+.|||||||||+++|||+++|||||+|++ -+..+.+|..+.++.+.||..+.+|.+|.|+
T Consensus 88 h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 88 HPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL 167 (439)
T ss_pred CcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence 999999999999999999999999999999999999999999999997 5888899999999999999999999999999
Q ss_pred eCCCCCCChhHHHHH
Q 009461 440 VNPYSEPDEEEEEEK 454 (534)
Q Consensus 440 ~dPf~~~~~~~~~~~ 454 (534)
.+||+++...+.+++
T Consensus 168 ~npFdDI~pr~~r~~ 182 (439)
T KOG0885|consen 168 INPFDDIKPRELRKE 182 (439)
T ss_pred cCchhhcchhhhhcc
Confidence 999999977654443
No 15
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-42 Score=311.05 Aligned_cols=146 Identities=45% Similarity=0.772 Sum_probs=141.8
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhccc--------cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCccCc
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNS 362 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~--------Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~ 362 (534)
++.|+|.||||.|.+|+|++||++.|.+.| |+++.|||||++|||||||.. |+|+|-.||||.+|+|| ++
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DE-NF 100 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDE-NF 100 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCc-ce
Confidence 678999999999999999999999998877 999999999999999999976 88999999999999999 89
Q ss_pred cccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEE
Q 009461 363 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 438 (534)
Q Consensus 363 ~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~V 438 (534)
.|+|+++|+|||||+|+++||.|||||...|.+||++|+|||||++||.++++||.+++.++++|.-+|.|..|+.
T Consensus 101 tlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGe 176 (177)
T KOG0879|consen 101 TLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGE 176 (177)
T ss_pred eeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999974
No 16
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2e-40 Score=312.65 Aligned_cols=150 Identities=46% Similarity=0.816 Sum_probs=140.9
Q ss_pred eEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--cc------ccCCcEEEEeecCcEEeecCCC-CCCCCCCccCC
Q 009461 286 GYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RG------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWG 353 (534)
Q Consensus 286 ~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g------~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g 353 (534)
.|+.|. ++.|+|+||||++.||++|+||++||+ .+ ||+++.||||+++|||||||+. ++|.++.++||
T Consensus 3 v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g 82 (164)
T cd01926 3 VFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYG 82 (164)
T ss_pred EEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccC
Confidence 466666 489999999999999999999999997 35 8999999999999999999986 78889999999
Q ss_pred CCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEE
Q 009461 354 KPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKI 433 (534)
Q Consensus 354 ~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I 433 (534)
.+|++| ...+.|+++|+||||+.++++++|||||+|.++|+||++|+|||||++|||||++|++++++ +++|+.+|+|
T Consensus 83 ~~~~~e-~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I 160 (164)
T cd01926 83 EKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVI 160 (164)
T ss_pred CccCCC-CccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEE
Confidence 999999 57789999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred EEEE
Q 009461 434 TGVT 437 (534)
Q Consensus 434 ~~~~ 437 (534)
.+|+
T Consensus 161 ~~cG 164 (164)
T cd01926 161 ADCG 164 (164)
T ss_pred EECC
Confidence 9985
No 17
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2e-40 Score=318.84 Aligned_cols=146 Identities=45% Similarity=0.776 Sum_probs=138.2
Q ss_pred eCeeEEEEeCCCCChhhHHHHHHHHhccc--------cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCccCcc
Q 009461 293 THGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSK 363 (534)
Q Consensus 293 ~~G~I~IeL~~d~aP~tv~NF~~L~~~g~--------Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~ 363 (534)
+.|+|+||||++.||+||+||++||.++| |+++.||||+++|||||||+. ++|.|+.++||..|++| ...
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e-~~~ 109 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDE-NFI 109 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCc-ccc
Confidence 67999999999999999999999997654 999999999999999999975 78899999999999998 467
Q ss_pred ccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEE-cChHHHHHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 364 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVV-GGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 364 l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVv-eGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
+.|+++|+|||++.|+++++||||||+.++|+||++|+|||+|+ +||+||++|++++++.+++|..+|+|.+|+++
T Consensus 110 ~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 110 AKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred cccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 88999999999999999999999999999999999999999999 79999999999999989999999999999974
No 18
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=3.4e-40 Score=328.34 Aligned_cols=153 Identities=31% Similarity=0.465 Sum_probs=140.5
Q ss_pred eCeeEEEEeCCCCChhhHHHHHHHHhcc-----------ccCCcEEEEeecC-cEEeecCCCCCCCCCCccCCCCCCCcc
Q 009461 293 THGDLNIELHCDITPRSCENFITLCERG-----------YYNGVAFHRSIRN-FMIQGGDPTGTGRGGESIWGKPFKDEV 360 (534)
Q Consensus 293 ~~G~I~IeL~~d~aP~tv~NF~~L~~~g-----------~Y~gt~FhRvi~~-f~IQgGdptg~g~gg~si~g~~f~dE~ 360 (534)
+.|+|+||||.+.||+||+||+.||++. +|+|+.||||+++ ||||+||+.+ ++.++||.+|+||
T Consensus 65 ~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---~g~s~~G~~f~dE- 140 (249)
T PTZ00221 65 LAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---FNVSSTGTPIADE- 140 (249)
T ss_pred ecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---CCccCCCCcccCc-
Confidence 4688999999999999999999999743 3999999999986 8999999874 3567889999999
Q ss_pred CccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEe
Q 009461 361 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 440 (534)
Q Consensus 361 ~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 440 (534)
...+.|+++|+|||||.|+|+|||||||||.++||||++|+|||+|++||+||++|++++++..++|..+|+|.+|+++.
T Consensus 141 ~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 141 GYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALT 220 (249)
T ss_pred cccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEec
Confidence 56889999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCCCCCChh
Q 009461 441 NPYSEPDEE 449 (534)
Q Consensus 441 dPf~~~~~~ 449 (534)
+|-+.....
T Consensus 221 ~~~p~~~~~ 229 (249)
T PTZ00221 221 GEKPPGRQQ 229 (249)
T ss_pred CCCCCcccc
Confidence 998665443
No 19
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=8.8e-40 Score=315.29 Aligned_cols=153 Identities=32% Similarity=0.548 Sum_probs=137.0
Q ss_pred cceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCcc
Q 009461 284 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 363 (534)
Q Consensus 284 ~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 363 (534)
....|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+.+... ...++.+|.+|....
T Consensus 27 ~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~--~~~~~~~~~~e~~~~ 104 (190)
T PRK10903 27 GDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNG 104 (190)
T ss_pred CCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCC--CCCCCCcccCccccc
Confidence 455689999999999999999999999999999999999999999999999999999875432 234578899996544
Q ss_pred ccCCcceEEEEeccC-CCCCCccEEEeccCCCCCCC-----CCcEEEEEEcChHHHHHHhcCCCCC----CCCCccceEE
Q 009461 364 LLHSGRGVVSMANSG-PHTNGSQFFILYKSATHLNY-----KHTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIKI 433 (534)
Q Consensus 364 l~h~~rG~lsman~g-~ntngSQFFItl~~~p~LD~-----k~tVFGrVveGmdvL~~Ie~~~td~----~~rP~~~I~I 433 (534)
+ |+.+|+||||+.+ +++|+|||||++.++++||+ +|+|||+|++|||||++|++++++. .++|..+|+|
T Consensus 105 l-~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I 183 (190)
T PRK10903 105 L-RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 183 (190)
T ss_pred C-cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEE
Confidence 4 5679999999965 99999999999999999995 8999999999999999999999976 5799999999
Q ss_pred EEEEEE
Q 009461 434 TGVTVF 439 (534)
Q Consensus 434 ~~~~Vl 439 (534)
.+|+|+
T Consensus 184 ~~~~v~ 189 (190)
T PRK10903 184 LSAKVL 189 (190)
T ss_pred EEEEEe
Confidence 999886
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=8e-40 Score=308.84 Aligned_cols=149 Identities=38% Similarity=0.625 Sum_probs=132.5
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCC
Q 009461 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHS 367 (534)
Q Consensus 288 V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~ 367 (534)
|.|+|+.|+|+|+||++.||+||+||+.||+.|||+++.||||+++|||||||+.. +.+ ...++.+|++|.+..+.|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~-~~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP-GMK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCC-CCC-cCCCCCCcCCcccccccC-
Confidence 68999999999999999999999999999999999999999999999999999752 221 234578899997665655
Q ss_pred cceEEEEeccC-CCCCCccEEEeccCCCCCC-------C-CCcEEEEEEcChHHHHHHhcCCCCC----CCCCccceEEE
Q 009461 368 GRGVVSMANSG-PHTNGSQFFILYKSATHLN-------Y-KHTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIKIT 434 (534)
Q Consensus 368 ~rG~lsman~g-~ntngSQFFItl~~~p~LD-------~-k~tVFGrVveGmdvL~~Ie~~~td~----~~rP~~~I~I~ 434 (534)
.+|+||||+.+ |++|+|||||++.++++|| + +|+|||+|++|||||++|++++++. +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 79999999985 9999999999999998886 3 7999999999999999999999986 37999999999
Q ss_pred EEEEE
Q 009461 435 GVTVF 439 (534)
Q Consensus 435 ~~~Vl 439 (534)
+|.|.
T Consensus 159 ~~~i~ 163 (164)
T PRK10791 159 SVTVS 163 (164)
T ss_pred EEEEe
Confidence 99874
No 21
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2e-39 Score=311.23 Aligned_cols=147 Identities=46% Similarity=0.733 Sum_probs=138.6
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHh---------ccccCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCccC
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCE---------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVN 361 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~---------~g~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~ 361 (534)
++.|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|||||||+. ++|.++.++||..|++| .
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e-~ 105 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDE-N 105 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCc-c
Confidence 478999999999999999999999996 569999999999999999999987 67889999999999999 5
Q ss_pred ccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEe
Q 009461 362 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 440 (534)
Q Consensus 362 ~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 440 (534)
..+.|+++|+|+|++.|+++++||||||+.++|+||++|+|||+|++|||||++|+++++. +++|..+|+|.+|++|.
T Consensus 106 ~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 106 FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGELQ 183 (183)
T ss_pred ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcCCeEEEEeEEcC
Confidence 7789999999999999999999999999999999999999999999999999999999884 68999999999999973
No 22
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-40 Score=331.75 Aligned_cols=162 Identities=45% Similarity=0.764 Sum_probs=155.1
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCC-------CCCCCc
Q 009461 287 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWG-------KPFKDE 359 (534)
Q Consensus 287 ~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g-------~~f~dE 359 (534)
-|.|+|++|+|+|.||.+.+|++|.||+.||+-.||+.|.||-|.++|.+|.|||+|+|.||.|||| ..|..|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 3889999999999999999999999999999999999999999999999999999999999999996 458999
Q ss_pred cCccccCCcceEEEEeccCCCCCCccEEEeccCC-CCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEE
Q 009461 360 VNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSA-THLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 438 (534)
Q Consensus 360 ~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~-p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~V 438 (534)
+.+.+.|...|+|||++.|.|.+||||||||+.+ ..||++|+|||+|++|||+|.+|+.+-+|++++|.++|+|.+..|
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii 161 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII 161 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence 9999999999999999999999999999999954 699999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCh
Q 009461 439 FVNPYSEPDE 448 (534)
Q Consensus 439 l~dPf~~~~~ 448 (534)
|.|||+++..
T Consensus 162 LdDPFddpp~ 171 (479)
T KOG0415|consen 162 LDDPFDDPPD 171 (479)
T ss_pred ecCCCCCchh
Confidence 9999987643
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=5.1e-39 Score=300.66 Aligned_cols=145 Identities=34% Similarity=0.576 Sum_probs=128.8
Q ss_pred EEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCCc
Q 009461 289 QLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSG 368 (534)
Q Consensus 289 ~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~ 368 (534)
.|+|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+++|||||||+...+.+ ..++.+|.+|.... .|+.
T Consensus 1 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~-~~~~ 77 (155)
T cd01920 1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNG-LSNT 77 (155)
T ss_pred CcEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCccccc-ccCC
Confidence 37899999999999999999999999999999999999999999999999998855433 34577888885443 4578
Q ss_pred ceEEEEeccC-CCCCCccEEEeccCCCCCCC-----CCcEEEEEEcChHHHHHHhcCCCCCC----CCCccceEEEEE
Q 009461 369 RGVVSMANSG-PHTNGSQFFILYKSATHLNY-----KHTVFGGVVGGLTTLAAMEKVPVDEN----DRPLEEIKITGV 436 (534)
Q Consensus 369 rG~lsman~g-~ntngSQFFItl~~~p~LD~-----k~tVFGrVveGmdvL~~Ie~~~td~~----~rP~~~I~I~~~ 436 (534)
+|+||||+.+ +++++|||||++.++++||+ +|+|||+|++||+||++|++++++.. ++|+.+|+|.++
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 9999999975 89999999999999999995 79999999999999999999999864 689888888763
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-40 Score=312.83 Aligned_cols=145 Identities=46% Similarity=0.767 Sum_probs=139.5
Q ss_pred eCeeEEEEeCCCCChhhHHHHHHHH--hccc-cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCccCccccCCc
Q 009461 293 THGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHSG 368 (534)
Q Consensus 293 ~~G~I~IeL~~d~aP~tv~NF~~L~--~~g~-Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~l~h~~ 368 (534)
..|+|+++|..|.+|+|++||..|| +.|| |.|++||||||.||+||||++ ++|+||.||||.+|.|| ++.|+|..
T Consensus 149 ~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdde-nf~lkht~ 227 (298)
T KOG0111|consen 149 RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDE-NFTLKHTM 227 (298)
T ss_pred ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccccccc-ceeeecCC
Confidence 5699999999999999999999999 5677 999999999999999999999 88999999999999999 89999999
Q ss_pred ceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 369 RGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 369 rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
+|+|||||+|+||||||||||+....|||++|+|||.|++||+||++|++..+ ++++|.+.|+|..|+.+
T Consensus 228 pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 228 PGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKVKIVECGEI 297 (298)
T ss_pred CceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999987 58999999999999865
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.4e-37 Score=286.30 Aligned_cols=145 Identities=51% Similarity=0.829 Sum_probs=136.3
Q ss_pred EEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCCcc
Q 009461 290 LHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGR 369 (534)
Q Consensus 290 l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~r 369 (534)
|+|+.|+|+|+||++.+|++|+||++||+.+||+++.|||++++|+||+||+.+++.++ +.++..|++|....+.|+++
T Consensus 2 ~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~~ 80 (146)
T cd00317 2 LDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHRR 80 (146)
T ss_pred eEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCCC
Confidence 78999999999999999999999999999999999999999999999999998665543 57789999998777778999
Q ss_pred eEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEE
Q 009461 370 GVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITG 435 (534)
Q Consensus 370 G~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~ 435 (534)
|+|+|++.++++++|||||+|.++++||++|+|||+|++||++|++|+.++++++++|..+|+|..
T Consensus 81 G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 81 GTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999963
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.7e-36 Score=281.54 Aligned_cols=150 Identities=50% Similarity=0.874 Sum_probs=134.6
Q ss_pred EEEEEEe-CeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCC--CccCCCCCCCccCcc
Q 009461 287 YVQLHTT-HGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGG--ESIWGKPFKDEVNSK 363 (534)
Q Consensus 287 ~V~l~T~-~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg--~si~g~~f~dE~~~~ 363 (534)
||.|+|+ .|+|+||||++.||++|+||++||+.|+|+|+.|||++++++||+|++.+.+..+ ...++.++++|....
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~ 80 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPS 80 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTT
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccc
Confidence 6899997 9999999999999999999999999999999999999999999999988655411 133456799997544
Q ss_pred ccCCcceEEEEeccC--CCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEE
Q 009461 364 LLHSGRGVVSMANSG--PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 438 (534)
Q Consensus 364 l~h~~rG~lsman~g--~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~V 438 (534)
+.++++|+|+|++.+ +++++|||||+|.++++||++|+|||+|++||+||++|+.++++. +|.++|+|.+|+|
T Consensus 81 ~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 81 LLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred cccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 444489999999986 888999999999999999999999999999999999999999876 9999999999997
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=2.9e-36 Score=287.61 Aligned_cols=129 Identities=33% Similarity=0.597 Sum_probs=115.5
Q ss_pred EEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCC---------------------CCC
Q 009461 291 HTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGR---------------------GGE 349 (534)
Q Consensus 291 ~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~---------------------gg~ 349 (534)
.|+.|+|+|+||++.||.||+||+.||+.|||+++.||||+++||||||||.+++. ++.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 48999999999999999999999999999999999999999999999999986543 245
Q ss_pred ccCCCCCC----CccCccccCCcceEEEEeccC--CCCCCccEEEecc-------CCCCCCCCCcEEEEEEcChHHHHHH
Q 009461 350 SIWGKPFK----DEVNSKLLHSGRGVVSMANSG--PHTNGSQFFILYK-------SATHLNYKHTVFGGVVGGLTTLAAM 416 (534)
Q Consensus 350 si~g~~f~----dE~~~~l~h~~rG~lsman~g--~ntngSQFFItl~-------~~p~LD~k~tVFGrVveGmdvL~~I 416 (534)
++|+.++. ++.+..+.|+.+|+||||+.+ +|+++|||||++. +++|||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 67777654 344567888899999999988 7999999999998 8999999999999999999999999
Q ss_pred hcC
Q 009461 417 EKV 419 (534)
Q Consensus 417 e~~ 419 (534)
+..
T Consensus 163 ~~g 165 (176)
T cd01924 163 KVG 165 (176)
T ss_pred cCC
Confidence 754
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.8e-32 Score=254.52 Aligned_cols=146 Identities=45% Similarity=0.774 Sum_probs=135.4
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCcEEEE---eecCcEEeecCCC-CCCCCCCccCCCCCCCccCccc
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHR---SIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKL 364 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~-Y~gt~FhR---vi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~l 364 (534)
.++|++.++||.|..|+|++||..||. .|+ |.++.||| .+++||+||||.+ ++|+||.|||+..|+|| ++.|
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~De-nFil 93 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDE-NFIL 93 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCc-CcEE
Confidence 688999999999999999999999995 344 99999999 3447999999998 88999999999999999 8999
Q ss_pred cCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 365 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 365 ~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
+|..+|+|||||.|||+|||||||++....|||++|+|||+|.+||+++++|+.... .++++..+|.|.+|+.|
T Consensus 94 khtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 94 KHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKITIADCGQL 167 (167)
T ss_pred ecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccEEEecCCcC
Confidence 999999999999999999999999999999999999999999999999999999655 48899999999999864
No 29
>PF04641 Rtf2: Rtf2 RING-finger
Probab=99.87 E-value=1.4e-22 Score=204.66 Aligned_cols=110 Identities=33% Similarity=0.525 Sum_probs=93.0
Q ss_pred CcchhhhhcCC---CCCCCCcc-CCCCceeEEeecCC-------------CCccccccccccccCceeEEEEecCCeeec
Q 009461 2 SITPYIRKYGK---HPVTGTPL-KLEDLIPLTFHKNA-------------EGEYHCPVLNKVFTEFTHIVAVKTTGNVFC 64 (534)
Q Consensus 2 ~i~p~i~k~~~---~Pvtg~pl-~lKDLi~l~f~~n~-------------~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s 64 (534)
+||+||.+++. .|.++..| +||||++|+|+.|. .+.|+||||+++|+++++|||||+||||||
T Consensus 61 aile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s 140 (260)
T PF04641_consen 61 AILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFS 140 (260)
T ss_pred HHHHHHHhcCcCCCCccccccccCccceeeEEeEecCccccccccccccCCceeECCCCCcccCCceeEEEEcCCCCEee
Confidence 69999999975 56666665 79999999999883 678999999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccCCCCcCCCCCCcEEecCCCCCCccc-cccchhhhcC
Q 009461 65 FEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKV-TLEFDHVKKG 115 (534)
Q Consensus 65 ~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP~n~~~r~-~~~f~~vk~~ 115 (534)
++||++|. +.|.||+||++|++.|||+|++|.+ +... ...+.+++..
T Consensus 141 ~~alke~k---~~~~Cp~c~~~f~~~DiI~Lnp~~e-e~~~l~~~~~~~~~~ 188 (260)
T PF04641_consen 141 EKALKELK---KSKKCPVCGKPFTEEDIIPLNPPEE-ELEKLRERMEERKAK 188 (260)
T ss_pred HHHHHhhc---ccccccccCCccccCCEEEecCCcc-HHHHHHHHHHHHHhh
Confidence 99999974 4578999999999999999999987 4333 3345555544
No 30
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.1e-18 Score=170.35 Aligned_cols=84 Identities=32% Similarity=0.563 Sum_probs=77.3
Q ss_pred CCCCCCCccCCCCceeEEeecCCC-----------CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCccc
Q 009461 12 KHPVTGTPLKLEDLIPLTFHKNAE-----------GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKE 80 (534)
Q Consensus 12 ~~Pvtg~pl~lKDLi~l~f~~n~~-----------~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~c 80 (534)
.|||+|+||+||||++|+|+..+. ..|+||||+.+++|.+.++++++||+||+++|+++|+.+. +.|
T Consensus 185 ~CP~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D--~v~ 262 (303)
T KOG3039|consen 185 VCPVSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD--MVD 262 (303)
T ss_pred eccCCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc--ccc
Confidence 599999999999999999986542 3699999999999999999999999999999999988654 599
Q ss_pred CCCCcCCCCCCcEEecC
Q 009461 81 LLTDEPFTKEDLITIQN 97 (534)
Q Consensus 81 lv~~~~f~~~DiI~LqD 97 (534)
||||++++++|||.||-
T Consensus 263 pv~d~plkdrdiI~Lqr 279 (303)
T KOG3039|consen 263 PVTDKPLKDRDIIGLQR 279 (303)
T ss_pred cCCCCcCcccceEeeec
Confidence 99999999999999995
No 31
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.4e-12 Score=128.24 Aligned_cols=74 Identities=26% Similarity=0.441 Sum_probs=65.6
Q ss_pred cCCCCceeEEeecCC-----C---------CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCc
Q 009461 20 LKLEDLIPLTFHKNA-----E---------GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 85 (534)
Q Consensus 20 l~lKDLi~l~f~~n~-----~---------~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~ 85 (534)
-+|||++.|+++.|. . .+|+|||++-+|++..+|++||+|||||++.+++| +++. .|++|+.
T Consensus 80 KslKDvveLklt~n~~~~gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKe--ikas--~C~~C~a 155 (293)
T KOG3113|consen 80 KSLKDVVELKLTLNPAFEGDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKE--IKAS--VCHVCGA 155 (293)
T ss_pred cchhhHhheecccCcccccccCccccccccceeecccccceecceEEEEEEeccceeccHHHHHH--hhhc--cccccCC
Confidence 489999999998772 1 36999999999999999999999999999999999 5565 7999999
Q ss_pred CCCCCCcEEecCC
Q 009461 86 PFTKEDLITIQNP 98 (534)
Q Consensus 86 ~f~~~DiI~LqDP 98 (534)
+|.++|+|+| ||
T Consensus 156 ~y~~~dvIvl-Ng 167 (293)
T KOG3113|consen 156 AYQEDDVIVL-NG 167 (293)
T ss_pred cccccCeEee-CC
Confidence 9999999964 45
No 32
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.41 E-value=2.9e-07 Score=72.69 Aligned_cols=53 Identities=26% Similarity=0.482 Sum_probs=46.1
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
+|+||+|+..|++- ++.+|||||+.+||.++... ...||+|+++++.+|+|.+
T Consensus 1 ~~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 1 EFLCPISLEVMKDP----VILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred CcCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChhhceeC
Confidence 47899999999985 45699999999999998765 3589999999999999974
No 33
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=8.6e-07 Score=99.59 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=46.1
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEec
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 96 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~Lq 96 (534)
..-||||+.-+.+ ++|..||||||++||+.+. ...+.+||.|+.+|...||++|.
T Consensus 643 ~LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~-etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD----AVITKCGHVFCEECVQTRY-ETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred ceeCCCccCchhh----HHHHhcchHHHHHHHHHHH-HHhcCCCCCCCCCCCcccccccC
Confidence 3579999977776 4799999999999999854 34456999999999999999863
No 34
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.7e-06 Score=80.76 Aligned_cols=57 Identities=28% Similarity=0.459 Sum_probs=47.9
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
.+.|-||||...++.... +-..||||||..||+.+..... +||+|+++++.++++.|
T Consensus 129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~--~CP~C~kkIt~k~~~rI 185 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTN--KCPTCRKKITHKQFHRI 185 (187)
T ss_pred ccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCC--CCCCcccccchhhheec
Confidence 356999999999987633 3478999999999999876654 89999999999998865
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=1.9e-05 Score=81.54 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=44.8
Q ss_pred ccccccccc--cccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 37 EYHCPVLNK--VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 37 ~~~CPVt~k--~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
++.||+|+. .+++..++.+. +|||.||..||+.|-... ...||+|+.++.+.++-
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~-~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRG-SGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCC-CCCCCCCCCccchhhcc
Confidence 589999998 57777777766 999999999999975443 34899999999988743
No 36
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=5.2e-05 Score=80.96 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=126.8
Q ss_pred CCCcceEEEEEEeCe----eEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCC--CCCCCCCccCCC
Q 009461 281 NPKKKGYVQLHTTHG----DLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPT--GTGRGGESIWGK 354 (534)
Q Consensus 281 ~~k~k~~V~l~T~~G----~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdpt--g~g~gg~si~g~ 354 (534)
.+-.-+.+.+.|..| -|.|+|+.+-.|.-++-|..+|..+|+++..|.||...+++|.||.. .+..|-.-.|..
T Consensus 94 L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 94 LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecC
Confidence 334456888999999 89999999999999999999999999999999999999999999965 332332333433
Q ss_pred C----C-CCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCcc
Q 009461 355 P----F-KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLE 429 (534)
Q Consensus 355 ~----f-~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~ 429 (534)
. | +.+.+..++|. .-++..........+-+|++.-...+.|..+..|||+|..|-++++.|+...++....|..
T Consensus 174 e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks 252 (558)
T KOG0882|consen 174 EGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS 252 (558)
T ss_pred CCcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc
Confidence 2 3 33456777775 4455555544444567899999899999999999999999999999999999999899999
Q ss_pred ceEEEEEEEE
Q 009461 430 EIKITGVTVF 439 (534)
Q Consensus 430 ~I~I~~~~Vl 439 (534)
++.|.++...
T Consensus 253 ~y~l~~Velg 262 (558)
T KOG0882|consen 253 PYGLMHVELG 262 (558)
T ss_pred ccccceeehh
Confidence 9998888643
No 37
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.63 E-value=5.8e-05 Score=73.24 Aligned_cols=59 Identities=19% Similarity=0.394 Sum_probs=47.1
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhh--------------ccCCcccCCCCcCCCCCCcEEecC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI--------------KTKNWKELLTDEPFTKEDLITIQN 97 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~--------------k~k~~~clv~~~~f~~~DiI~LqD 97 (534)
.+.+.||||...+++- ++-+|||+||+.||.+... ......||+|-.+++..++|+|-.
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 4579999999999764 3468999999999987532 112358999999999999998764
No 38
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.62 E-value=4.7e-05 Score=56.76 Aligned_cols=41 Identities=27% Similarity=0.564 Sum_probs=22.5
Q ss_pred cccccccccCceeEEEEecCCeeecHHHHHHHhhcc--CCcccC
Q 009461 40 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT--KNWKEL 81 (534)
Q Consensus 40 CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~--k~~~cl 81 (534)
||||+. |++..+.-++-+||||||.+||++|.... ..++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 87755554445599999999999997654 345564
No 39
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.49 E-value=0.00015 Score=59.82 Aligned_cols=54 Identities=20% Similarity=0.452 Sum_probs=41.5
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
.+|+||+|+..|.+= ++-+||++|...+|++.... ....||+|+++++..|+|+
T Consensus 3 ~~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 3 DEFLCPITGELMRDP----VILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GGGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE
T ss_pred cccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceE
Confidence 368999999999986 46699999999999997655 2358999999999999986
No 40
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.23 E-value=0.00052 Score=49.57 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=31.5
Q ss_pred cccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCC
Q 009461 40 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 83 (534)
Q Consensus 40 CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~ 83 (534)
||||...+.+ -+++-+|||+|++++++++... +.+||+|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 8999999998 3568999999999999997655 3589987
No 41
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.13 E-value=0.0003 Score=52.25 Aligned_cols=44 Identities=23% Similarity=0.486 Sum_probs=35.8
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCc
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 85 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~ 85 (534)
+|++|++.+++ .+..++-+|||+|+.+|++++. .....||+|.+
T Consensus 1 ~C~~C~~~~~~-~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-ERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-CCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 59999999943 3447789999999999999977 44458999963
No 42
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.10 E-value=0.00056 Score=54.03 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=31.8
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 84 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~ 84 (534)
.+.||+|.+.|.+= |.-+.|||+|..++|.++....+..+||+.|
T Consensus 11 ~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 48999999999976 6677999999999999987555567999943
No 43
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.86 E-value=0.0011 Score=49.06 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=33.9
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCC
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 83 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~ 83 (534)
.||||...|.....++.+. |||+|.++||.++.... ..||+|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~--~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN--NSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS--SB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC--CcCCcc
Confidence 5999999998766666555 99999999999987654 389988
No 44
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00053 Score=74.57 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=48.7
Q ss_pred cCCCCceeEEeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhcc---CCcccCCCCcCCCCCCcEEec
Q 009461 20 LKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT---KNWKELLTDEPFTKEDLITIQ 96 (534)
Q Consensus 20 l~lKDLi~l~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~---k~~~clv~~~~f~~~DiI~Lq 96 (534)
+.-+++..+.... .+.||+|.-...= .++-.||||||+.||=++-.-+ ...+||+|...++-+|+-++.
T Consensus 173 ~~~e~i~qv~~~t----~~~CPICL~~~~~----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 173 VDWEDIFQVYGST----DMQCPICLEPPSV----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred cchHHhhhhhcCc----CCcCCcccCCCCc----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 3444444444433 6899999988762 2344599999999999884422 234899999999988887654
No 45
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00078 Score=68.69 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=46.3
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEec
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 96 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~Lq 96 (534)
.+.+.|-+|.....+-+ .-||||+|||.||-+-....- .||+|-++|...+||-|+
T Consensus 237 ~a~~kC~LCLe~~~~pS----aTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPS----ATPCGHIFCWSCILEWCSEKA--ECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCceEEEecCCCCCC----cCcCcchHHHHHHHHHHcccc--CCCcccccCCCcceeeec
Confidence 35689999998876653 579999999999998655332 699999999999999886
No 46
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.78 E-value=0.00084 Score=72.09 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 90 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~ 90 (534)
+..+.||||...|.+- ++-+|||+||..||.++... ...||+|..++...
T Consensus 24 e~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccc
Confidence 3468999999999765 25799999999999986543 23799999988654
No 47
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.76 E-value=0.0023 Score=48.62 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=36.7
Q ss_pred ccccccccccccCceeEEEEecCCee-ecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V-~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
+..|+||+..+.+ +++.||||+ |+.+|+.++.... .+||+|..+++
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRK--KKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTT--SBBTTTTBB-S
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccC--CCCCcCChhhc
Confidence 3579999998775 578899999 9999999986633 48999998875
No 48
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.45 E-value=0.009 Score=65.25 Aligned_cols=100 Identities=26% Similarity=0.439 Sum_probs=67.0
Q ss_pred EEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCCcceEEEEec
Q 009461 297 LNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMAN 376 (534)
Q Consensus 297 I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~lsman 376 (534)
+.+||.+ .+|.+++.|+.+.+.|++. +.+..-.|+ +..+..|...+.| +. ..-.+|+|.+.|
T Consensus 203 ~evE~~~-~~p~s~EH~la~~~~G~~~---Vd~~tsTfi-----------~d~~L~g~~~p~E-n~--~~R~rGtVTVRn 264 (503)
T TIGR03268 203 VEVELDP-NAPVSVEHFLALMEDGTFR---VDYRTSTFI-----------SDDSLRGLDKPEE-NI--EKRRRGAVTVRN 264 (503)
T ss_pred EEEEEcC-CCChhHHHHHHHHhCCeEE---EeeeecceE-----------ecccccCccCCcc-cc--CcccceeEEEEe
Confidence 4557654 5999999999999998742 111111111 1223335566666 22 233599999999
Q ss_pred cCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHh
Q 009461 377 SGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAME 417 (534)
Q Consensus 377 ~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie 417 (534)
.|.... ..||.-.+.+ ..-.|+|+|+|+.|||+++--+
T Consensus 265 ~G~G~G--~VYIYredr~-ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 265 SGVGEG--RVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred eccCce--eEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence 987543 5888776654 3567999999999999987443
No 49
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.40 E-value=0.0049 Score=44.55 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=34.6
Q ss_pred cccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCC
Q 009461 40 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 83 (534)
Q Consensus 40 CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~ 83 (534)
||||...+.... .+.+|||.|+.+|+.++........||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999998774 68999999999999998765555688876
No 50
>PRK00969 hypothetical protein; Provisional
Probab=96.35 E-value=0.01 Score=64.97 Aligned_cols=100 Identities=24% Similarity=0.454 Sum_probs=67.2
Q ss_pred EEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCCcceEEEEec
Q 009461 297 LNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVVSMAN 376 (534)
Q Consensus 297 I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~lsman 376 (534)
+.+||.++ +|.+++.|+.+.+.|++. +.+..-.|+ +..+..|...+.| +.. .-.+|+|.+.|
T Consensus 206 ~eve~~~~-~p~s~EH~la~~~~G~f~---Vd~~tstfI-----------~d~~L~g~~~p~E-n~~--~R~~GtVTVRt 267 (508)
T PRK00969 206 VEVELDPG-APKSVEHFLALLEDGTFE---VDFETSTFI-----------ADDRLQGLKIPEE-NFE--PRRRGTVTVRT 267 (508)
T ss_pred EEEEEcCC-CCchHHHHHHHHhCCeEE---EeeeecceE-----------eeccccCccCCcc-ccC--ccccceEEEEe
Confidence 56677644 999999999999998732 111111111 1123335556666 332 33599999999
Q ss_pred cCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHh
Q 009461 377 SGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAME 417 (534)
Q Consensus 377 ~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie 417 (534)
.|.+.. .-||.-.+.+ -.-.|+|+|+|+.|||+++--.
T Consensus 268 ~G~g~G--~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 268 AGVGVG--KVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred eccCce--eEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence 987643 5888877654 3567999999999999987443
No 51
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0016 Score=67.45 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=46.6
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 98 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP 98 (534)
.-.||||-|.--|-+ ++-.+|-||||.||-....+-+ +|||++.|..-+++|.|-++
T Consensus 300 ~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~--~CPVT~~p~~v~~l~rl~~~ 356 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYG--HCPVTGYPASVDHLIRLFNK 356 (357)
T ss_pred cccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcC--CCCccCCcchHHHHHHHhcC
Confidence 468999999877764 5678899999999999887544 99999999988888766543
No 52
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.11 E-value=0.008 Score=44.43 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=28.7
Q ss_pred cccccccccCceeEEEEecCCeeecHHHHHHHhhccCC--cccCCC
Q 009461 40 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKN--WKELLT 83 (534)
Q Consensus 40 CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~--~~clv~ 83 (534)
||||...|++- +.-+|||+|+..||.++...... +.||+|
T Consensus 1 CpiC~~~~~~P----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999986 23589999999999998765432 468776
No 53
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.97 E-value=0.0073 Score=43.13 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=33.8
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcC
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 86 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~ 86 (534)
.||+|...+.. .+.+.+|||.|+.+|++++... ...+||+|...
T Consensus 1 ~C~iC~~~~~~---~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhC---ceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 48999999833 3556679999999999987654 34589999764
No 54
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.012 Score=58.46 Aligned_cols=59 Identities=10% Similarity=0.296 Sum_probs=47.4
Q ss_pred CCCccccccccccccCceeEEEEecCCeeecHHHHHHHhh-ccCCcccCCCCcCCCCCCcEEec
Q 009461 34 AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFTKEDLITIQ 96 (534)
Q Consensus 34 ~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~-k~k~~~clv~~~~f~~~DiI~Lq 96 (534)
+.+.|-|-||...=.+- ++-.|||.|||.||-|.-. ......||||.-..+.+.+|+|-
T Consensus 44 ~~~~FdCNICLd~akdP----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCC----EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 45679999999876654 5688999999999988643 33334689999999999999875
No 55
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.0069 Score=61.25 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
.+.|-|++|..+...- .-.+||||||+.||-..-.+.+.-.||+|-.....++||.|
T Consensus 213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 4579999999877654 46899999999999884333444469999998888888765
No 56
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.49 E-value=0.0096 Score=60.00 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=38.7
Q ss_pred ccccccccccccCce----eEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 37 EYHCPVLNKVFTEFT----HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t----~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
...||||...|.+.. .+.++-+|||+||.+||.+.... .-.||+|-.+|.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 468999999887532 24567789999999999986433 238999988775
No 57
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.045 Score=58.19 Aligned_cols=98 Identities=26% Similarity=0.478 Sum_probs=67.2
Q ss_pred eEEEEeCCCCChhhHHHHHHHHhcccc----CCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCCcceE
Q 009461 296 DLNIELHCDITPRSCENFITLCERGYY----NGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGV 371 (534)
Q Consensus 296 ~I~IeL~~d~aP~tv~NF~~L~~~g~Y----~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~ 371 (534)
.+.++|-.+ +|++++.|++|.+.|.+ .-.+| | +.++..+.+.+.| +..++ .||.
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~lri~~~tntf--------i----------s~~~lq~~~~~~e-n~d~R--erG~ 261 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTF--------I----------SDDTLQEEKVPEE-NFDLR--ERGA 261 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccce--------e----------eccccccccCChh-hhhhh--hcce
Confidence 367777654 99999999999988862 22222 1 2233345556666 44444 4999
Q ss_pred EEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhc
Q 009461 372 VSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEK 418 (534)
Q Consensus 372 lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~ 418 (534)
+++.|.|..+ ..-||.-.+-+ ---.|+|.|||.+||++++--+.
T Consensus 262 iTvRn~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 262 ITVRNVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred EEEEeeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEeccc
Confidence 9999988654 35788766544 24568999999999999875543
No 58
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.09 E-value=0.037 Score=37.94 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=28.4
Q ss_pred cccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCC
Q 009461 40 CPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 83 (534)
Q Consensus 40 CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~ 83 (534)
||||.....+ ..+.+|||+|++.+++++.. .....||+|
T Consensus 1 C~iC~~~~~~----~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD----PVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC----cEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 7888887432 34568999999999998754 233468876
No 59
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.89 E-value=0.039 Score=57.10 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=43.7
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhcc-CCcccCCCCcCCCCCCcEEe
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~-k~~~clv~~~~f~~~DiI~L 95 (534)
-|+|||.+..-|.-..-+ .-.||||++.+++.+|.... -.++||-|-+.-.-.|+|.+
T Consensus 336 ~FiCPVlKe~~t~ENpP~-ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rv 394 (396)
T COG5109 336 LFICPVLKELCTDENPPV-MLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRV 394 (396)
T ss_pred eeeccccHhhhcccCCCe-eeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcc
Confidence 489999998777654433 56799999999999986532 24799999877666666643
No 60
>PRK00969 hypothetical protein; Provisional
Probab=93.81 E-value=0.4 Score=52.93 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=70.0
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccc
Q 009461 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 364 (534)
Q Consensus 285 k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 364 (534)
....+|.|+.|.|+|||. ....++.-|+..++. |.|...|=--++- +-.|-+.-. -.+-..+
T Consensus 50 ~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~-vAfGp~~s~--------l~p~~~~----- 111 (508)
T PRK00969 50 TKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSA-VAFGPFESD--------LEPSREE----- 111 (508)
T ss_pred cceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccc-eeEcccccC--------cccccCc-----
Confidence 345678999999999998 445556666665543 4555554333332 333321100 0111111
Q ss_pred cCCcceEEEEeccCCCCCCccEEEeccCCCCCCC--CCcEEEEEEcChHHHHHHhcC
Q 009461 365 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY--KHTVFGGVVGGLTTLAAMEKV 419 (534)
Q Consensus 365 ~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~--k~tVFGrVveGmdvL~~Ie~~ 419 (534)
....++-|.|.-+|-+...+.+.|..++....-| .--|||+||.|..+|++|...
T Consensus 112 ~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~ 168 (508)
T PRK00969 112 YEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDG 168 (508)
T ss_pred ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCC
Confidence 2335788888888877666677666654321111 116999999999999998763
No 61
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.053 Score=55.30 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=36.8
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.-.||+|++.=|.-. .+-+|||+|||-||..=..-.-.+.||.||++..
T Consensus 239 ~~~C~~Cg~~PtiP~---~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPH---VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCe---eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 468999999766542 3678999999999987433333478999998654
No 62
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=93.21 E-value=0.17 Score=47.49 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=50.1
Q ss_pred eeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecC--cEEeecCCCCCCCCCCccCCCCCCCccCccccCCcceEE
Q 009461 295 GDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRN--FMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHSGRGVV 372 (534)
Q Consensus 295 G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~--f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~~rG~l 372 (534)
-.++.+|+.|.||+||+.|..+. =|.+..+|-..-+ .+|.-++....+ ...| +.-.|..+|-|
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~~~~~~----------~~~E--N~T~~P~pGdi 72 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPDFDPFE----------PGRE--NHTVTPIPGDI 72 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--SSS-------------S---SEESS--TTEE
T ss_pred eEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCCcCcCC----------CCCC--cCcccCCCCcE
Confidence 36889999999999999999987 1233333322222 233334422111 1122 22345567777
Q ss_pred EEe---ccCCCCC-C--cc--EEEeccCC------CCCCCCCcEEEEEEcChHHHHHHhc
Q 009461 373 SMA---NSGPHTN-G--SQ--FFILYKSA------THLNYKHTVFGGVVGGLTTLAAMEK 418 (534)
Q Consensus 373 sma---n~g~ntn-g--SQ--FFItl~~~------p~LD~k~tVFGrVveGmdvL~~Ie~ 418 (534)
.+. .+..+.+ | +. +|+-+..+ -+|-+ .+|++|++|++-|.++-+
T Consensus 73 ~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 73 LLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR 130 (147)
T ss_dssp EEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred EEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence 666 1111111 1 33 33333322 12323 489999999998776643
No 63
>PHA02926 zinc finger-like protein; Provisional
Probab=93.19 E-value=0.04 Score=54.77 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=39.1
Q ss_pred ccccccccccccC-----ceeEEEEecCCeeecHHHHHHHhhcc----CCcccCCCCcCCC
Q 009461 37 EYHCPVLNKVFTE-----FTHIVAVKTTGNVFCFEAIKELNIKT----KNWKELLTDEPFT 88 (534)
Q Consensus 37 ~~~CPVt~k~ft~-----~t~iv~ik~cG~V~s~~~v~~l~~k~----k~~~clv~~~~f~ 88 (534)
+..|++|...... .-.+-.+-+|+|+||..||.+..... ....||+|-..|.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 5789999977532 23466788999999999999876421 1235999999886
No 64
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.069 Score=54.82 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=39.3
Q ss_pred ccccccc--cccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 39 HCPVLNK--VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 39 ~CPVt~k--~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.||+|+. .|+..-+ .+|.+|||-+|.+||..|-... ...||.|++.+.+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk-~~in~C~H~lCEsCvd~iF~~g-~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLK-LMINECGHRLCESCVDRIFSLG-PAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccce-eeeccccchHHHHHHHHHHhcC-CCCCCcccchhhhcccc
Confidence 4999985 4555544 4566999999999999965432 46899999987765554
No 65
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=92.79 E-value=0.8 Score=50.49 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=71.0
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccC--c
Q 009461 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN--S 362 (534)
Q Consensus 285 k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~--~ 362 (534)
..-.+|.|+.|.|+|+|-. ...++.-|+..++. |.|...|=.-++- +-.|- |+.++. .
T Consensus 46 ~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~~-vAfGp---------------~~sdl~p~~ 105 (503)
T TIGR03268 46 TKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQE-VAFGP---------------FPSDLEPSR 105 (503)
T ss_pred cceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchhh-eeeCc---------------ccCCccccC
Confidence 3456789999999999983 55667667666543 4455443332322 22221 111111 1
Q ss_pred cccCCcceEEEEeccCCCCCCccEEEeccCCC--C-CCCCCcEEEEEEcChHHHHHHhc
Q 009461 363 KLLHSGRGVVSMANSGPHTNGSQFFILYKSAT--H-LNYKHTVFGGVVGGLTTLAAMEK 418 (534)
Q Consensus 363 ~l~h~~rG~lsman~g~ntngSQFFItl~~~p--~-LD~k~tVFGrVveGmdvL~~Ie~ 418 (534)
.-....++-|.+.-+|-+...+.+.|+.++.. + +....-|||+||.|..+|++|..
T Consensus 106 ~~~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 106 EPSEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred CcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 11233578888888887776777777766443 1 22245699999999999999865
No 66
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.081 Score=56.46 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=39.5
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccC-CcccCCCCcCCCCCCc
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTK-NWKELLTDEPFTKEDL 92 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k-~~~clv~~~~f~~~Di 92 (534)
-|+|||.+.--+....=+ .=.||||+|.+++.+|..... .++||-|-..-.-.|.
T Consensus 334 vF~CPVlKeqtsdeNPPm-~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~ 389 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPM-MLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDT 389 (394)
T ss_pred eeecccchhhccCCCCCe-eeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhc
Confidence 489999998766654322 346999999999999865332 3899999765444443
No 67
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.081 Score=51.98 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=37.8
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 84 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~ 84 (534)
..+..||||...|..- .+-+|||.||..|+..+.. ....||+|-
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcC--CCcCCcccC
Confidence 3578999999999977 6789999999999999765 346899998
No 68
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=90.40 E-value=0.14 Score=40.11 Aligned_cols=29 Identities=45% Similarity=0.705 Sum_probs=25.5
Q ss_pred CcchhhhhcCCCCCCCCccCCCCceeEEe
Q 009461 2 SITPYIRKYGKHPVTGTPLKLEDLIPLTF 30 (534)
Q Consensus 2 ~i~p~i~k~~~~Pvtg~pl~lKDLi~l~f 30 (534)
.|..||+++++||++|++|+.+||+++..
T Consensus 27 ~i~~~~~~~~~cP~~~~~~~~~~l~~~~~ 55 (63)
T smart00504 27 AIEKWLLSHGTDPVTGQPLTHEDLIPNLA 55 (63)
T ss_pred HHHHHHHHCCCCCCCcCCCChhhceeCHH
Confidence 36789999999999999999999999754
No 69
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=0.79 Score=49.13 Aligned_cols=22 Identities=36% Similarity=0.302 Sum_probs=20.7
Q ss_pred eEEEEeCCCCChhhHHHHHHHH
Q 009461 296 DLNIELHCDITPRSCENFITLC 317 (534)
Q Consensus 296 ~I~IeL~~d~aP~tv~NF~~L~ 317 (534)
-|.||||.+.||++++.|+++.
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 4999999999999999999986
No 70
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=89.71 E-value=0.52 Score=38.89 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=32.0
Q ss_pred ccccccccccCc---------eeEEEEecCCeeecHHHHHHHhhccCCcccCCC
Q 009461 39 HCPVLNKVFTEF---------THIVAVKTTGNVFCFEAIKELNIKTKNWKELLT 83 (534)
Q Consensus 39 ~CPVt~k~ft~~---------t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~ 83 (534)
.|+||...|.+. .-.+++-+|||+|-..||.+...... .||+|
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~--~CP~C 72 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN--TCPLC 72 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS--B-TTS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC--cCCCC
Confidence 499999999322 24566778999999999998765443 89988
No 71
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=89.17 E-value=0.15 Score=53.50 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=40.8
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhh-ccCCcccCCCCcCCCCCCc
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~-k~k~~~clv~~~~f~~~Di 92 (534)
-..|-||+.-|+ |-+|-||||-||-=||..+-. ++ .||.|-.+|++.|+
T Consensus 23 lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~L~~~p---~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFN----IPMITPCSHTFCSLCIRKFLSYKP---QCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhc----CceeccccchHHHHHHHHHhccCC---CCCceecccchhhh
Confidence 467999999996 567899999999999998643 33 79999999998764
No 72
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.96 E-value=0.19 Score=43.31 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=26.0
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHH
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIK 69 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~ 69 (534)
.-.|+||++.|.+ ..+++-|||+||-+.|++
T Consensus 78 ~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 3469999999988 456788999999998875
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.69 E-value=0.21 Score=51.49 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=37.3
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.-||.|+.-+.+-.+- .-||+.||.+||+.-.+.. .++|++|.. +||+
T Consensus 275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~ds-Df~CpnC~r----kdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALLDS-DFKCPNCSR----KDVL 322 (427)
T ss_pred ccCcchhhhhhCcccC---ccccchHHHHHHhhhhhhc-cccCCCccc----ccch
Confidence 5699999999886332 4599999999999755544 479999975 6765
No 74
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=88.64 E-value=0.15 Score=41.26 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=24.3
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.-|+.|...|..- |.+..|.|+||..||.+.. .. .||||..|-..+|+-
T Consensus 8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~-~~---~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCI-GS---ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGT-TT---B-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhc-CC---CCCCcCChHHHHHHH
Confidence 3599999988765 6789999999999997732 22 699999999888864
No 75
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=0.4 Score=49.75 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=40.3
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 87 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f 87 (534)
---|.+|...|+...+ +..-||-|+|--.||++-...-++ +||+|..+.
T Consensus 323 GveCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~y~~-~CPvCrt~i 371 (374)
T COG5540 323 GVECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLGYSN-KCPVCRTAI 371 (374)
T ss_pred CceEEEEhhhhcccce-EEEeccCceechhHHHHHHhhhcc-cCCccCCCC
Confidence 3579999999998888 557799999999999997664432 899998765
No 76
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.56 E-value=0.59 Score=35.90 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=24.5
Q ss_pred cccccccccccCceeEEEEecCCee--ecHHHHHHHhhccCCcccCCCCcC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEP 86 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V--~s~~~v~~l~~k~k~~~clv~~~~ 86 (534)
..||+++..+..- |=-+.|-|+ |-.+.+=+++.....|+||+|+++
T Consensus 3 L~CPls~~~i~~P---~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP---VRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE---EEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC---ccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 4699999998754 324457776 556666666776777999999874
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=86.50 E-value=0.52 Score=50.99 Aligned_cols=63 Identities=29% Similarity=0.436 Sum_probs=50.3
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCCCCCCccc
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKV 105 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP~n~~~r~ 105 (534)
+.|.+++++=-.- |+-..+||||-...|+|+..... +||++++|++.+|+|.|.=|.-..-|.
T Consensus 1 m~CaISgEvP~~P---VvS~~Sg~vfEkrLIEqyI~e~G--~DPIt~~pLs~eelV~Ik~~~~v~pk~ 63 (506)
T KOG0289|consen 1 MVCAISGEVPEEP---VVSPVSGHVFEKRLIEQYIAETG--KDPITNEPLSIEELVEIKVPAQVRPKP 63 (506)
T ss_pred CeecccCCCCCCc---cccccccchHHHHHHHHHHHHcC--CCCCCCCcCCHHHeeeccccccccCCC
Confidence 3688888875433 66777999999999999887655 899999999999999998766544444
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=84.84 E-value=0.33 Score=52.53 Aligned_cols=29 Identities=38% Similarity=0.772 Sum_probs=26.6
Q ss_pred cchhhhhcCCCCCCCCccCCCCceeEEee
Q 009461 3 ITPYIRKYGKHPVTGTPLKLEDLIPLTFH 31 (534)
Q Consensus 3 i~p~i~k~~~~Pvtg~pl~lKDLi~l~f~ 31 (534)
|.-||+.+|+||||++||++.|||+++-.
T Consensus 28 IEqyI~e~G~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 28 IEQYIAETGKDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred HHHHHHHcCCCCCCCCcCCHHHeeecccc
Confidence 67899999999999999999999999853
No 79
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.19 E-value=0.77 Score=49.08 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=50.0
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhh-ccCCcccCCCCcCCCCCCcEEecCCCCCCccccccchhhhcC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLEFDHVKKG 115 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~-k~k~~~clv~~~~f~~~DiI~LqDP~n~~~r~~~~f~~vk~~ 115 (534)
.-+|-||-.-|-+...+..|-+|||||-.-|+.+.-- .+.+.-||+|- ||+|...- .|-..|+||.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~----------ik~~~r~~-~N~~~~d~vvEe 72 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ----------IKLQERHV-ANPSTVDHVVEE 72 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee----------ecccceee-echhhhhhhhcc
Confidence 3479999544444445556778999999999988532 33334799986 44443221 145679999987
Q ss_pred CCcChHHHh
Q 009461 116 LKVDDEELR 124 (534)
Q Consensus 116 ~~~~~~~~~ 124 (534)
.-+.+.+..
T Consensus 73 ~~Vld~~~~ 81 (465)
T KOG0827|consen 73 SVVLDWDVG 81 (465)
T ss_pred chhhhHHHH
Confidence 666665443
No 80
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.04 E-value=0.48 Score=50.92 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=43.6
Q ss_pred ccccccccc--ccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 38 YHCPVLNKV--FTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 38 ~~CPVt~k~--ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
-.||+|... |..++.|| +-.|||.|...||++-..+.--++||.|+.+-++.+|-.+
T Consensus 5 ~tcpiclds~~~~g~hr~v-sl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e 63 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIV-SLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPE 63 (463)
T ss_pred ccCceeeeeeeecCceEEe-eecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHH
Confidence 479999974 55565555 6679999999999986554434699999988888777643
No 81
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=82.75 E-value=0.6 Score=36.71 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=25.9
Q ss_pred EEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCc
Q 009461 55 AVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 55 ~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~Di 92 (534)
.+-+|||+++..|+.-= ..--||+|+.+|...|+
T Consensus 21 ~~~pCgH~I~~~~f~~~----rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGE----RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccceeeccccChh----hccCCCCCCCcccCCCC
Confidence 35799999999998641 11269999999987664
No 82
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.24 E-value=1 Score=35.32 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCC--CCcCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELL--TDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv--~~~~f~~ 89 (534)
...|++|++.|++...||+=-.||-+|-.+|.+++. .|.. |+.+|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g------~C~~~~c~~~~~~ 53 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAG------GCINYSCGTGFEW 53 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhCC------ceEeccCCCCccc
Confidence 458999999999999999999999999999999843 6777 8877753
No 83
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=79.82 E-value=0.7 Score=45.28 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=34.2
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 87 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f 87 (534)
.|.|-+|++.|..- ++..|||-||.-|.-+=..+ .-.|.+|++.-
T Consensus 196 PF~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~k--g~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP----VVTECGHSFCSLCAIRKYQK--GDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch----hhhhcchhHHHHHHHHHhcc--CCcceecchhh
Confidence 58999999999754 34789999999987652222 34899999754
No 84
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=78.61 E-value=0.78 Score=37.66 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=20.6
Q ss_pred Ccchhhhh-cCCCCCCCCccCCCCceeEE
Q 009461 2 SITPYIRK-YGKHPVTGTPLKLEDLIPLT 29 (534)
Q Consensus 2 ~i~p~i~k-~~~~Pvtg~pl~lKDLi~l~ 29 (534)
.|.-||.+ +++||+||++|+..||++..
T Consensus 30 ~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 30 AIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp HHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred HHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 36779999 78999999999999998753
No 85
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=78.51 E-value=1.1 Score=46.28 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=36.3
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
-..|-||..-|. |-++-+|||-||+=||...--. .--||+|-++|.+
T Consensus 25 ~lrC~IC~~~i~----ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRIS----IPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheee----cceecccccchhHHHHHHHhcC--CCCCccccccHHh
Confidence 457999988775 5578999999999999874322 2369999887764
No 86
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=76.97 E-value=2.2 Score=43.91 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=39.1
Q ss_pred CCccccccccccccCce---------------eEEEEecCCeee-cHHHHHHHhhccC-CcccCCCCcCCCC
Q 009461 35 EGEYHCPVLNKVFTEFT---------------HIVAVKTTGNVF-CFEAIKELNIKTK-NWKELLTDEPFTK 89 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t---------------~iv~ik~cG~V~-s~~~v~~l~~k~k-~~~clv~~~~f~~ 89 (534)
.++|+||-|+|...+.+ +..--+.||-|| +..+++....--. ..+|.+||+.|.|
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSR 199 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSR 199 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccc
Confidence 46899999999888776 122234688887 6777776544332 3589999999987
No 87
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=75.69 E-value=1.9 Score=30.11 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=8.7
Q ss_pred CCcccCCCCcC
Q 009461 76 KNWKELLTDEP 86 (534)
Q Consensus 76 k~~~clv~~~~ 86 (534)
..|.||+|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 46899999874
No 88
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.83 E-value=1.4 Score=45.74 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=36.3
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
-.|++|+-..+-- ++-.|+|+||+.||+--. ..++.-|.||-.+|.. +|+
T Consensus 8 ~eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy-~ndk~~CavCR~pids-~i~ 57 (324)
T KOG0824|consen 8 KECLICYNTGNCP----VNLYCFHKFCYICIKGSY-KNDKKTCAVCRFPIDS-TID 57 (324)
T ss_pred CcceeeeccCCcC----ccccccchhhhhhhcchh-hcCCCCCceecCCCCc-chh
Confidence 3699998766533 456899999999999733 3333459999999974 554
No 89
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.18 E-value=1.7 Score=46.90 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=29.7
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHH
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKEL 71 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l 71 (534)
.-|+|-||+.++.+. |.+..-||+||||..|++..
T Consensus 183 slf~C~ICf~e~~G~-~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQ-HCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred hcccceeeehhhcCc-ceeeecccchHHHHHHHHHH
Confidence 359999999999865 56668899999999999865
No 90
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.70 E-value=0.56 Score=49.57 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=38.5
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.+++||||.--+++. ...+.|+|-||.+||-.-+ +..+-.||-|-+.+.
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~-r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKAL-RSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHH-HhcCCCCchHHhhcc
Confidence 468999999888865 3457899999999998743 444558999987664
No 91
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.53 E-value=1.5 Score=44.11 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=33.2
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 87 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f 87 (534)
.||-.|+.-=. .+=++|-.|+||||..|+.. --+ -.|++|.+..
T Consensus 4 VhCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~--~~~--~~C~lCkk~i 47 (233)
T KOG4739|consen 4 VHCNKCFRFPS--QDPFFLTACRHVFCEPCLKA--SSP--DVCPLCKKSI 47 (233)
T ss_pred EEeccccccCC--CCceeeeechhhhhhhhccc--CCc--ccccccccee
Confidence 46999987554 44577999999999999975 212 1799999873
No 92
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=71.99 E-value=1.9 Score=43.91 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=41.9
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQN 97 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqD 97 (534)
...||++++.+-+- +.-+.|||||-.+.|.++.-.....+||+-+-+ +...+|+
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~----~~~~~~~ 229 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE----NPYYIQP 229 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccCC----ccccccc
Confidence 36799998888765 668899999999999998766556789996654 5555554
No 93
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=70.64 E-value=2.4 Score=41.07 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=24.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
..|+||-|+..||- .+|++ ..+.||+||.++..
T Consensus 116 ~~Y~Cp~C~~rytf---------------~eA~~------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 116 MFFFCPNCHIRFTF---------------DEAME------YGFRCPQCGEMLEE 148 (178)
T ss_pred CEEECCCCCcEEeH---------------HHHhh------cCCcCCCCCCCCee
Confidence 36899999988873 24443 26899999998765
No 94
>PF14353 CpXC: CpXC protein
Probab=70.34 E-value=5.3 Score=36.09 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=36.7
Q ss_pred cccccccccccCceeEEEEecCCeeecH-HHHHHHhhcc--CCcccCCCCcCCCCCCcEEecCCCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCF-EAIKELNIKT--KNWKELLTDEPFTKEDLITIQNPNA 100 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~-~~v~~l~~k~--k~~~clv~~~~f~~~DiI~LqDP~n 100 (534)
..||.|+..|.-. +++.=|+-.. +..+++. .. -.+.||.||..|.-.--+..+||..
T Consensus 2 itCP~C~~~~~~~-----v~~~I~~~~~p~l~e~il-~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 2 ITCPHCGHEFEFE-----VWTSINADEDPELKEKIL-DGSLFSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred cCCCCCCCeeEEE-----EEeEEcCcCCHHHHHHHH-cCCcCEEECCCCCCceecCCCEEEEcCCC
Confidence 5799999999743 3333333222 3344432 22 2358999999999877788888863
No 95
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=69.62 E-value=2.6 Score=48.44 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=42.7
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHH--HHhhccCCcccCCCCcCCCCCCcEEecC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIK--ELNIKTKNWKELLTDEPFTKEDLITIQN 97 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~--~l~~k~k~~~clv~~~~f~~~DiI~LqD 97 (534)
.+.||++++.++=-.+. -.|.|+=|.+++- ++|.+.-.|+|+||++.+.-+++|.-+.
T Consensus 306 SL~CPl~~~Rm~~P~r~---~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~ 365 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPARG---HTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGY 365 (636)
T ss_pred EecCCcccceeecCCcc---cccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHH
Confidence 37999999877644322 2588887777665 4455666799999999999888886544
No 96
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.55 E-value=1.2 Score=51.37 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=38.2
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
-.||+|-+.|.+.- +..-++|+|.||..||.-...-.. .|++|-..|.+-+
T Consensus 124 ~~CP~Ci~s~~DqL-~~~~k~c~H~FC~~Ci~sWsR~aq--TCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQL-EESEKHTAHYFCEECVGSWSRCAQ--TCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHHh-hccccccccccHHHHhhhhhhhcc--cCchhhhhhheee
Confidence 46788888887652 334568999999999998654443 7999999997633
No 97
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=67.27 E-value=2.8 Score=39.74 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=23.7
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
..|+||-|+..||- .+|++ .++.||+||.++..
T Consensus 108 ~~Y~Cp~c~~r~tf---------------~eA~~------~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 108 MFFICPNMCVRFTF---------------NEAME------LNFTCPRCGAMLDY 140 (158)
T ss_pred CeEECCCCCcEeeH---------------HHHHH------cCCcCCCCCCEeee
Confidence 35889999987762 34443 26899999987643
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=65.54 E-value=3.1 Score=43.93 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=35.3
Q ss_pred CccccccccccccCceeEEEEecCCee---ecHHHHHHHhhccCCcccCCCCcCCCCCCc
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNV---FCFEAIKELNIKTKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V---~s~~~v~~l~~k~k~~~clv~~~~f~~~Di 92 (534)
.+| ||.|..++--.-+-+.--+||-- |||.-|.| + =+.+||.|-..++++.|
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq-~---lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQ-N---LNGRCPACRRKYDDENV 68 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHh-h---ccCCChHhhhhccccce
Confidence 345 99999887655454555678854 45555554 2 23599999999987765
No 99
>PHA02768 hypothetical protein; Provisional
Probab=64.70 E-value=6.5 Score=31.05 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=27.6
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
-|.||.|+|.|+..+++. .| +.+-.++.+|..|++.|.+.-
T Consensus 5 ~y~C~~CGK~Fs~~~~L~-----~H---------~r~H~k~~kc~~C~k~f~~~s 45 (55)
T PHA02768 5 GYECPICGEIYIKRKSMI-----TH---------LRKHNTNLKLSNCKRISLRTG 45 (55)
T ss_pred ccCcchhCCeeccHHHHH-----HH---------HHhcCCcccCCcccceecccc
Confidence 389999999999765432 11 112224568999999987544
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=64.29 E-value=2.4 Score=44.24 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=30.3
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
+|--|.+.+.-+-+ +-+|-||||++|-.- -.. ..|+.|+++..+
T Consensus 92 fCd~Cd~PI~IYGR---mIPCkHvFCl~CAr~--~~d--K~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGR---MIPCKHVFCLECARS--DSD--KICPLCDDRVQR 135 (389)
T ss_pred eecccCCcceeeec---ccccchhhhhhhhhc--Ccc--ccCcCcccHHHH
Confidence 46677776653333 348999999999854 122 379999987654
No 101
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=63.30 E-value=3.4 Score=45.92 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=43.2
Q ss_pred eecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhc---cCCcccCCCCcCCCC
Q 009461 30 FHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK---TKNWKELLTDEPFTK 89 (534)
Q Consensus 30 f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k---~k~~~clv~~~~f~~ 89 (534)
|...+.++..|-.|..+--+. +...|-|+||.-||+++... ..+..||+|..+++-
T Consensus 529 ~~~enk~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 529 LPDENKGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CCccccCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 333445788999999987765 34679999999999988652 345789999998874
No 102
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=63.15 E-value=1.6 Score=45.68 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=37.3
Q ss_pred cccccc--ccccccCceeEEEEecCCee-------ecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 37 EYHCPV--LNKVFTEFTHIVAVKTTGNV-------FCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 37 ~~~CPV--t~k~ft~~t~iv~ik~cG~V-------~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
.|-||| |.|..++..-+-|-+--||- -+.+-.+-|..+.|.++|.||++.++-
T Consensus 349 pykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKN 410 (423)
T COG5189 349 PYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKN 410 (423)
T ss_pred eecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhcc
Confidence 589999 88998887666666655651 123333444567788999999998863
No 103
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=62.88 E-value=4.8 Score=37.53 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=23.0
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
..|+||-|+..|+- .+++ .+.-....+.||.||.++..
T Consensus 98 ~~Y~Cp~C~~~y~~---------------~ea~-~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 98 AYYKCPNCQSKYTF---------------LEAN-QLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred cEEECcCCCCEeeH---------------HHHH-HhcCCCCcEECCCCCCEEEE
Confidence 35889977766651 2233 32213444899999987643
No 104
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.02 E-value=4.1 Score=40.47 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=30.7
Q ss_pred ccccccccccccCceeEEEEecCCe-eecHHH-----HHHHhh-ccCCcccCCCCcCCCCCCcEE
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGN-VFCFEA-----IKELNI-KTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~-V~s~~~-----v~~l~~-k~k~~~clv~~~~f~~~DiI~ 94 (534)
.+.||||.++|+.. -+++.+- |...+. .+.+|- .=.-|.||.||=.|.++|.=.
T Consensus 5 ~~~CPvC~~~F~~~----~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~ 65 (214)
T PF09986_consen 5 KITCPVCGKEFKTK----KVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEK 65 (214)
T ss_pred ceECCCCCCeeeee----EEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccccccc
Confidence 57899999999754 2344332 322111 011110 002368999999998877543
No 105
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=61.61 E-value=54 Score=29.62 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=53.4
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHH----hccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCC-CccCc
Q 009461 288 VQLHTTHGDLNIELHCDITPRSCENFITLC----ERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK-DEVNS 362 (534)
Q Consensus 288 V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~----~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~-dE~~~ 362 (534)
++|.-....+.++|+.. .|++.|+++. +-..|-+ .++--++- .++ ++ ..
T Consensus 3 I~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p~---------------------~l~~~~-~~ 56 (120)
T PF04126_consen 3 IKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLPL---------------------KLPTEE-NP 56 (120)
T ss_dssp EEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S--------------------------SS-SE
T ss_pred EEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCCC---------------------CCCccc-Cc
Confidence 45666667899999877 7899998886 1122322 22211111 011 11 11
Q ss_pred cccCCcceEEEEeccCCCCCCccEEEeccCCC-------CCCCCCcEEEEEEcChHHHHHHhc
Q 009461 363 KLLHSGRGVVSMANSGPHTNGSQFFILYKSAT-------HLNYKHTVFGGVVGGLTTLAAMEK 418 (534)
Q Consensus 363 ~l~h~~rG~lsman~g~ntngSQFFItl~~~p-------~LD~k~tVFGrVveGmdvL~~Ie~ 418 (534)
. .-...|-|+.-..|. -|-|-+++.| .+-....++|||++|.+.|..+..
T Consensus 57 ~-~~~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 57 R-SSVEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp E-SSB-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred c-ccccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 1 123577777654432 3777787775 455567899999999999888743
No 106
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=60.32 E-value=4.9 Score=38.62 Aligned_cols=9 Identities=11% Similarity=-0.045 Sum_probs=7.3
Q ss_pred cccCCCCcC
Q 009461 78 WKELLTDEP 86 (534)
Q Consensus 78 ~~clv~~~~ 86 (534)
++||+||.|
T Consensus 150 ~~CPiCga~ 158 (166)
T COG1592 150 EVCPICGAP 158 (166)
T ss_pred CcCCCCCCh
Confidence 589999954
No 107
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.96 E-value=7.5 Score=41.51 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=45.6
Q ss_pred CCCceeEEeecCCC--CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCc
Q 009461 22 LEDLIPLTFHKNAE--GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 85 (534)
Q Consensus 22 lKDLi~l~f~~n~~--~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~ 85 (534)
|++|=-..|...++ +...|.||...|...-++. +=||+|.|--.||+--....+ --||+|-.
T Consensus 212 l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklR-iLPC~H~FH~~CIDpWL~~~r-~~CPvCK~ 275 (348)
T KOG4628|consen 212 LKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLR-ILPCSHKFHVNCIDPWLTQTR-TFCPVCKR 275 (348)
T ss_pred HhhCCcEEeccccccCCCceEEEeecccccCCeee-EecCCCchhhccchhhHhhcC-ccCCCCCC
Confidence 44444555665432 2258999999999988877 489999999999998665553 24999965
No 108
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=57.82 E-value=2.4 Score=49.01 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=41.0
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
+.|++|.. .. .+.|-.|||++|.+|+.+..--..+..|++|-..+..++++.
T Consensus 455 ~~c~ic~~----~~-~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD----LD-SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc----cc-cceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 88999998 22 345889999999999999765555558999988777766654
No 109
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.52 E-value=6 Score=44.61 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=40.5
Q ss_pred ccccccccccccCceeEEE-EecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEec
Q 009461 37 EYHCPVLNKVFTEFTHIVA-VKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 96 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~-ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~Lq 96 (534)
.-.|+||...+..-.++.. +-+|||+|...|+.+--... --||.|-..+-...++-..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~--qtCP~CR~~~~~~~~~~~~ 349 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ--QTCPTCRTVLYDYVLWQIA 349 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHh--CcCCcchhhhhcccccccc
Confidence 4589999999987544333 34899999999998754332 2799998755544444333
No 110
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=54.36 E-value=7.3 Score=42.48 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=28.9
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
..|.||+|.+.||. .+++.-|......++|-+|+.++-.
T Consensus 127 ~~Y~Cp~C~kkyt~---------------Lea~~L~~~~~~~F~C~~C~gelve 165 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTS---------------LEALQLLDNETGEFHCENCGGELVE 165 (436)
T ss_pred ccccCCccccchhh---------------hHHHHhhcccCceEEEecCCCchhc
Confidence 46999999999983 5666655544556899999987643
No 111
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=53.03 E-value=6.9 Score=40.53 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=44.8
Q ss_pred eecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCc
Q 009461 30 FHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 85 (534)
Q Consensus 30 f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~ 85 (534)
+-.....+..||+|...+......+-.-+|||.....++++++... +.||+|.+
T Consensus 151 ~c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~--y~CP~C~~ 204 (276)
T KOG1940|consen 151 KCVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG--YTCPICSK 204 (276)
T ss_pred chhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC--CCCCcccc
Confidence 3333445677999999999998888888999999999999987655 89999976
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=52.03 E-value=4 Score=41.26 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=38.3
Q ss_pred ccccccccc--cccCceeEEEEecCCeeecHHHHHHHhhccCCcccC--CCCcCCCC
Q 009461 37 EYHCPVLNK--VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKEL--LTDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k--~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~cl--v~~~~f~~ 89 (534)
+-.||||+. -++...+|.+.--|=|-+|..||+++- ......|| -||+-+.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIF-s~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIF-SRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHh-cCCCCCCCCccHHHHHHH
Confidence 458999984 688888776444499999999999943 33445899 68865543
No 113
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=51.57 E-value=5.9 Score=38.84 Aligned_cols=16 Identities=50% Similarity=0.870 Sum_probs=14.6
Q ss_pred ccccccccccccCcee
Q 009461 37 EYHCPVLNKVFTEFTH 52 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~ 52 (534)
-|+||.|+|+|.+++|
T Consensus 87 IYICPFTGKVF~DNt~ 102 (238)
T PF10915_consen 87 IYICPFTGKVFGDNTH 102 (238)
T ss_pred EEEcCCcCccccCCCC
Confidence 4999999999999976
No 114
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=51.28 E-value=8.1 Score=36.68 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=28.6
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
+.||-|+-++|.-..-.++.+ ||++- + ..+|+.||..|+--.
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~-~~~~~-----~------~~~c~~c~~~f~~~e 42 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAED-GNAIR-----R------RRECLACGKRFTTFE 42 (154)
T ss_pred CcCCCCCCCCCEeEeccccCC-CCcee-----e------eeeccccCCcceEeE
Confidence 479999988875444444445 88764 1 138999999886433
No 115
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=51.13 E-value=5.2 Score=30.84 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=22.2
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.|.||.|++.|+... +..=+.++=....+...||+|...++
T Consensus 2 ~f~CP~C~~~~~~~~-----------L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS-----------LVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHHH-----------HHHHHHhHCcCCCCCccCCCchhhhh
Confidence 588999999765321 11111111112234568999987544
No 116
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=49.40 E-value=7.2 Score=23.81 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=7.9
Q ss_pred cccccccccccCc
Q 009461 38 YHCPVLNKVFTEF 50 (534)
Q Consensus 38 ~~CPVt~k~ft~~ 50 (534)
|.||+|.+.|.+.
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 5788888877654
No 117
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.55 E-value=11 Score=41.04 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=37.2
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
.+|.|-||+..|-+- |. -+|||-||..||++..- ....||.|..+|-+
T Consensus 83 sef~c~vc~~~l~~p---v~-tpcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPP---VV-TPCGHSFCLECLDRSLD--QETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCC---cc-ccccccccHHHHHHHhc--cCCCCccccccccc
Confidence 479999999888765 22 39999999999998332 34589999877754
No 118
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.54 E-value=8.3 Score=40.14 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=32.9
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 87 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f 87 (534)
.|-|-+|++.|-+- +...|||-||.-|.-+=-.+ .-+|+||+...
T Consensus 241 Pf~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk--~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQK--GEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc----hhhcCCceeehhhhcccccc--CCcceeccccc
Confidence 46799999999876 35789999999876442222 23799998743
No 119
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=46.77 E-value=9.9 Score=29.36 Aligned_cols=43 Identities=7% Similarity=0.255 Sum_probs=21.8
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 86 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~ 86 (534)
.|+|.+|+-++....- -+...|-.--.++. + +..|+||+|+.+
T Consensus 1 ~y~C~~CgyiYd~~~G----d~~~~i~pGt~f~~--L-p~~w~CP~C~a~ 43 (50)
T cd00730 1 KYECRICGYIYDPAEG----DPDEGIPPGTPFED--L-PDDWVCPVCGAG 43 (50)
T ss_pred CcCCCCCCeEECCCCC----CcccCcCCCCCHhH--C-CCCCCCCCCCCc
Confidence 3778887766654310 00111111112333 2 347999999964
No 120
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=45.77 E-value=8.6 Score=23.89 Aligned_cols=13 Identities=38% Similarity=0.950 Sum_probs=9.6
Q ss_pred cccccccccccCc
Q 009461 38 YHCPVLNKVFTEF 50 (534)
Q Consensus 38 ~~CPVt~k~ft~~ 50 (534)
|.||.|.+.|+..
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 5688888887754
No 122
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=43.93 E-value=18 Score=37.91 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=34.8
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.-||||+-.++.. ++-..-||..|-.|=.++. -+||.|..+++
T Consensus 49 leCPvC~~~l~~P---i~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g 91 (299)
T KOG3002|consen 49 LDCPVCFNPLSPP---IFQCDNGHLACSSCRTKVS-----NKCPTCRLPIG 91 (299)
T ss_pred ccCchhhccCccc---ceecCCCcEehhhhhhhhc-----ccCCccccccc
Confidence 4599999999876 4567789999999986532 28999999887
No 123
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.37 E-value=7.4 Score=44.34 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=36.9
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCCCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNA 100 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP~n 100 (534)
.+|++|--.|-+.+.+=+--.|||++|..|++.|-. ..|+ | +| +|-.++.+|.+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn----~scp-~--~~--De~~~~~~~~e 65 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN----ASCP-T--KR--DEDSSLMQLKE 65 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh----ccCC-C--Cc--cccchhcChhh
Confidence 379999777776666655667999999999999763 2566 2 33 34444555544
No 124
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=42.55 E-value=28 Score=29.69 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=39.7
Q ss_pred ccccccccccCceeEEEEe-cCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCCCC
Q 009461 39 HCPVLNKVFTEFTHIVAVK-TTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNA 100 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik-~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP~n 100 (534)
.||-|.-..++...+.+.+ .|-|.|-.-||.+-... + ..||+|.++|. |||+.+
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k-~~CPld~q~w~------~~~~~~ 87 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-K-GVCPLDRQTWV------LADGGA 87 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-C-CCCCCCCceeE------EecccC
Confidence 5888887666666555544 69999999999985433 3 27999988874 777654
No 125
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=41.22 E-value=16 Score=28.72 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=13.6
Q ss_pred cccCCCCcCCCCCCcEEe
Q 009461 78 WKELLTDEPFTKEDLITI 95 (534)
Q Consensus 78 ~~clv~~~~f~~~DiI~L 95 (534)
-+|++|+++|+.+|-|++
T Consensus 6 ~~C~~Cg~~~~~~dDiVv 23 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVV 23 (54)
T ss_pred ccChhhCCcccCCCCEEE
Confidence 389999999985555543
No 126
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=40.07 E-value=7.4 Score=32.21 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=17.0
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.+||.|..++. +..|+.+|..|-..+.+.+ .||-|++++.
T Consensus 2 ~~CP~C~~~L~--------~~~~~~~C~~C~~~~~~~a---~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELE--------WQGGHYHCEACQKDYKKEA---FCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEE--------EETTEEEETTT--EEEEEE---E-TTT-SB-E
T ss_pred CcCCCCCCccE--------EeCCEEECccccccceecc---cCCCcccHHH
Confidence 35666666654 2335555555555544433 5666666553
No 127
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.24 E-value=11 Score=40.92 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred cccccccccccc-----------------CceeEEEEecCCeeecHHHHH---HHhhccCC----cccCCCCcCCCC-CC
Q 009461 37 EYHCPVLNKVFT-----------------EFTHIVAVKTTGNVFCFEAIK---ELNIKTKN----WKELLTDEPFTK-ED 91 (534)
Q Consensus 37 ~~~CPVt~k~ft-----------------~~t~iv~ik~cG~V~s~~~v~---~l~~k~k~----~~clv~~~~f~~-~D 91 (534)
...||+|..+=. .-+| +.-|||||.+.+++. ++-++... -.||.|..++.- .-
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pth--aF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTH--AFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCce--eecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 578999986532 1111 234899999998876 33333221 279999998873 22
Q ss_pred cE--EecCCC
Q 009461 92 LI--TIQNPN 99 (534)
Q Consensus 92 iI--~LqDP~ 99 (534)
-| ..|||.
T Consensus 406 ~vrLiFQ~~~ 415 (416)
T PF04710_consen 406 YVRLIFQDPL 415 (416)
T ss_dssp ----------
T ss_pred ceEEEEeCCC
Confidence 22 246653
No 128
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=23 Score=38.07 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=34.1
Q ss_pred CCccccccccccccCceeEEE---------EecCCeeecHHHHHHHhhccCCcccCCCCcC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVA---------VKTTGNVFCFEAIKELNIKTKNWKELLTDEP 86 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~---------ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~ 86 (534)
.++-.|-+|+.++-..-|--. --||||.+-.+|++--.... --||+|-.|
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq--QTCPICr~p 343 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ--QTCPICRRP 343 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc--cCCCcccCc
Confidence 456799999998432221111 12799999999998755433 379999876
No 129
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.96 E-value=10 Score=40.72 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=42.9
Q ss_pred EeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 29 TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 29 ~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
=|+........|-++++.+... .+=.+.|.|+||...+++.++-..+ -.||.+++.|...+.+
T Consensus 322 Pfah~~~S~Lvc~isge~md~~-N~P~lfpnG~Vyg~~~L~s~~~~~~-i~dP~~~k~f~~~~l~ 384 (389)
T KOG0396|consen 322 PFAHHAQSRLVCSISGELMDDD-NPPHLFPNGYVYGTKALESLNEDDG-IGDPRTKKVFRYSELC 384 (389)
T ss_pred CchhhhhhHHHhhccccccCCC-CCcccccCceeehhHHHHhhcccCC-CcCCCCCccccHHHHH
Confidence 3444444455666666666554 2334568999999999999886654 5789998888765544
No 130
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=37.28 E-value=25 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=26.8
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhh-ccCCcccCCCCc
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI-KTKNWKELLTDE 85 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~-k~k~~~clv~~~ 85 (534)
-|+||.|+..|++. .+-+++++. ....|.|-+||.
T Consensus 3 Vf~i~~T~EiF~dY--------------e~Y~~R~~~y~~~vwtC~~TGk 38 (102)
T PF10537_consen 3 VFYIPFTGEIFRDY--------------EEYLKRMILYNQRVWTCEITGK 38 (102)
T ss_pred eEEeCCCCcccCCH--------------HHHHHHHHHHhCCeeEEecCCC
Confidence 48899999999987 455666654 456799998886
No 131
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=37.13 E-value=41 Score=25.92 Aligned_cols=46 Identities=13% Similarity=0.367 Sum_probs=25.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
|+|.|-.|--+..+ .|+=.-|-+|..|+.-|-..+. .|++|++++-
T Consensus 1 Gr~nCKsCWf~~k~-----Li~C~dHYLCl~CLt~ml~~s~--~C~iC~~~LP 46 (50)
T PF03854_consen 1 GRYNCKSCWFANKG-----LIKCSDHYLCLNCLTLMLSRSD--RCPICGKPLP 46 (50)
T ss_dssp ------SS-S--SS-----EEE-SS-EEEHHHHHHT-SSSS--EETTTTEE--
T ss_pred CCccChhhhhcCCC-----eeeecchhHHHHHHHHHhcccc--CCCcccCcCc
Confidence 46778777766665 3566788999999998765554 8999998763
No 132
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=36.75 E-value=43 Score=28.83 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=27.8
Q ss_pred EEEecCCeeecHHHHHHHhhc-cCCcccCCCCcCCCCC
Q 009461 54 VAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKE 90 (534)
Q Consensus 54 v~ik~cG~V~s~~~v~~l~~k-~k~~~clv~~~~f~~~ 90 (534)
+++-.|||.|-.-||.+-... ...-.||.|-.+|..+
T Consensus 47 lv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 47 LVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred eeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 347789999999999986543 2235899999887643
No 133
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=36.16 E-value=18 Score=39.22 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=40.7
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
+..+.||.|..++-+.+.- .+|||.||..|+...... .-.|++|.....-...+
T Consensus 19 ~~~l~C~~C~~vl~~p~~~---~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT---TTCGHRFCAGCLLESLSN--HQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCC---CCCCCcccccccchhhcc--CcCCcccccccchhhcc
Confidence 4569999999999987421 489999999999986554 34799987666544444
No 134
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=35.51 E-value=16 Score=23.90 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=11.6
Q ss_pred CccccccccccccC
Q 009461 36 GEYHCPVLNKVFTE 49 (534)
Q Consensus 36 ~~~~CPVt~k~ft~ 49 (534)
-.|.||.|.+.|.+
T Consensus 13 k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 13 KPYKCPYCGKSFSN 26 (26)
T ss_dssp SSEEESSSSEEESS
T ss_pred CCCCCCCCcCeeCc
Confidence 46999999999863
No 135
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=35.38 E-value=22 Score=25.72 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=23.7
Q ss_pred ccccc-ccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCC
Q 009461 40 CPVLN-KVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 87 (534)
Q Consensus 40 CPVt~-k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f 87 (534)
||+|+ ..+...+....+.--|+.+..+- ++ .|.|..||+.+
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~~~~~~i~~-----vp--~~~C~~CGE~~ 42 (46)
T TIGR03831 1 CPICGGEELEGKTTTETYEYGGELIVIEN-----VP--ALVCPQCGEEY 42 (46)
T ss_pred CCCCCCceecceEEEEEEEeCCEEEEEeC-----CC--ccccccCCCEe
Confidence 88884 55655552333333566655221 22 36899999865
No 136
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=35.37 E-value=15 Score=32.63 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=23.5
Q ss_pred cccccc-cccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 40 CPVLNK-VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 40 CPVt~k-~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
||+|+. .+........+.=+|+.+.. . -..|.|+.||+.|-
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~G~~~~v-~-------~~~~~C~~CGe~~~ 42 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYKGESITI-G-------VPGWYCPACGEELL 42 (127)
T ss_pred CCCCCCccceeeeecceEEEcCEEEEE-e-------eeeeECCCCCCEEE
Confidence 999984 44333322223335666553 2 22478999998553
No 137
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=35.04 E-value=16 Score=33.82 Aligned_cols=20 Identities=35% Similarity=0.879 Sum_probs=15.3
Q ss_pred ccccccccccccCceeEEEEecCCeeec
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFC 64 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s 64 (534)
.+|||.|+-++ .+.+|-|||
T Consensus 28 ~~hCp~Cg~PL--------F~KdG~v~C 47 (131)
T COG1645 28 AKHCPKCGTPL--------FRKDGEVFC 47 (131)
T ss_pred HhhCcccCCcc--------eeeCCeEEC
Confidence 47999999876 256788876
No 138
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=34.92 E-value=22 Score=23.29 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=10.2
Q ss_pred cccccccccccCc
Q 009461 38 YHCPVLNKVFTEF 50 (534)
Q Consensus 38 ~~CPVt~k~ft~~ 50 (534)
|.|.+|.+.|++.
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T PF12171_consen 2 FYCDACDKYFSSE 14 (27)
T ss_dssp CBBTTTTBBBSSH
T ss_pred CCcccCCCCcCCH
Confidence 6788888888764
No 139
>PLN02189 cellulose synthase
Probab=34.83 E-value=30 Score=41.96 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=41.6
Q ss_pred cccccccccccc---CceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 37 EYHCPVLNKVFT---EFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k~ft---~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
..+|.||+.... +.-.+|+-.-||--+|..|+ ++..+..+-.||.|...|++
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchhh
Confidence 469999998754 33367777779999999999 55677777899999999984
No 140
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=34.16 E-value=16 Score=28.13 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=6.1
Q ss_pred ccCCCCcCCCC
Q 009461 79 KELLTDEPFTK 89 (534)
Q Consensus 79 ~clv~~~~f~~ 89 (534)
.||||+.+|++
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999999875
No 141
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=32.91 E-value=22 Score=38.59 Aligned_cols=51 Identities=8% Similarity=0.186 Sum_probs=35.5
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.|-||-.. .+=|-|.||||.+|-.|+.-.......--||.|--+++--.-|
T Consensus 371 LCKICaen----dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 371 LCKICAEN----DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHhhcc----CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 47777543 3346689999999999998765544344799888777544433
No 142
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=32.62 E-value=28 Score=28.28 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.6
Q ss_pred ccCCCCcC-CCC--CCcEEecCCCC
Q 009461 79 KELLTDEP-FTK--EDLITIQNPNA 100 (534)
Q Consensus 79 ~clv~~~~-f~~--~DiI~LqDP~n 100 (534)
.||+|+-+ |++ ..+|.|.||++
T Consensus 20 ~CP~Cgs~~~te~W~G~~iIidpe~ 44 (64)
T COG2093 20 ICPVCGSTDLTEEWFGLLIIIDPEK 44 (64)
T ss_pred cCCCCCCcccchhhccEEEEEcCcH
Confidence 69999976 765 47899999975
No 143
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=31.80 E-value=9.4 Score=41.57 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=46.3
Q ss_pred hhhhcCCCCCCCCccCCCCceeEE---e--ecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCccc
Q 009461 6 YIRKYGKHPVTGTPLKLEDLIPLT---F--HKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKE 80 (534)
Q Consensus 6 ~i~k~~~~Pvtg~pl~lKDLi~l~---f--~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~c 80 (534)
|+..+.+.||.|..++.-.+..=. + -.|.-|+|+|-.|+..|-+-.. .+--.|-.++-. .++|
T Consensus 231 ~~de~t~spvlg~~ik~vEiteesr~~l~~i~n~iGdyiCqLCK~kYeD~F~-LAQHrC~RIV~v-----------EYrC 298 (500)
T KOG3993|consen 231 FEDEVTTSPVLGLKIKEVEITEESRAKLAGIPNVIGDYICQLCKEKYEDAFA-LAQHRCPRIVHV-----------EYRC 298 (500)
T ss_pred hhhhhccCccccceeeeecccchhhhhhccCcccHHHHHHHHHHHhhhhHHH-HhhccCCeeEEe-----------eecC
Confidence 445556667777666521111100 0 1222478999999998877532 123346655541 2699
Q ss_pred CCCCcCCCCCCcEEecCCCCCCc
Q 009461 81 LLTDEPFTKEDLITIQNPNALDT 103 (534)
Q Consensus 81 lv~~~~f~~~DiI~LqDP~n~~~ 103 (534)
+-||+.|.= |-||.+
T Consensus 299 PEC~KVFsC--------PANLAS 313 (500)
T KOG3993|consen 299 PECDKVFSC--------PANLAS 313 (500)
T ss_pred CcccccccC--------chhhhh
Confidence 999999974 777764
No 144
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=31.00 E-value=23 Score=27.03 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=26.5
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKEL 71 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l 71 (534)
..|+.|.+.|+-...-.--+.||++|+..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 3699999999876554555689999999988753
No 145
>PLN02195 cellulose synthase A
Probab=30.97 E-value=45 Score=40.24 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=43.7
Q ss_pred cccccccccccc---CceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 37 EYHCPVLNKVFT---EFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 37 ~~~CPVt~k~ft---~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.-+|-||+.... +..-+||-.-||--+|..|+ ++..+..+-.||.|...|+++|.+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~~~~~ 64 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYDAENVF 64 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcccccccc
Confidence 458999997432 23467888899999999999 556777788999999999955544
No 146
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.85 E-value=26 Score=37.49 Aligned_cols=42 Identities=12% Similarity=0.328 Sum_probs=32.0
Q ss_pred ccccccccc-cccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCc
Q 009461 37 EYHCPVLNK-VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 85 (534)
Q Consensus 37 ~~~CPVt~k-~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~ 85 (534)
+-.||||+- +++ .++.||||--|+.||.|-....| +|..|..
T Consensus 422 d~lCpICyA~pi~-----Avf~PC~H~SC~~CI~qHlmN~k--~CFfCkt 464 (489)
T KOG4692|consen 422 DNLCPICYAGPIN-----AVFAPCSHRSCYGCITQHLMNCK--RCFFCKT 464 (489)
T ss_pred cccCcceecccch-----hhccCCCCchHHHHHHHHHhcCC--eeeEecc
Confidence 568999985 444 36899999999999998554444 7777754
No 147
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=30.73 E-value=11 Score=26.00 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=5.8
Q ss_pred CCCCCCC
Q 009461 528 FKDFSGW 534 (534)
Q Consensus 528 fg~f~~w 534 (534)
=||||+|
T Consensus 14 ~~NFSaW 20 (30)
T PF13132_consen 14 SGNFSAW 20 (30)
T ss_pred CcChHHH
Confidence 5799998
No 148
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=30.59 E-value=28 Score=36.04 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=34.2
Q ss_pred CCCCCCccCCCCceeEEeecC-CCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 13 HPVTGTPLKLEDLIPLTFHKN-AEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 13 ~Pvtg~pl~lKDLi~l~f~~n-~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
|+|=|+..+--=|+.=|+-.. .+-.|.||.|.|.|-+.+.+ | +=-|=--..|.+.|..|++-|.+
T Consensus 190 C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNL---R---------AHmQTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 190 CGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNL---R---------AHMQTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred cccccccccchHHhhcccccccCCCCccCCcccchhcchHHH---H---------HHHHhhcCCccccCcchhhHHHH
Confidence 555566555555555554322 12346777777777665321 1 11111112345788888888865
No 149
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=30.15 E-value=33 Score=24.87 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.0
Q ss_pred hhhhcCCCCCCCCccCCCCc
Q 009461 6 YIRKYGKHPVTGTPLKLEDL 25 (534)
Q Consensus 6 ~i~k~~~~Pvtg~pl~lKDL 25 (534)
|++--..||+||++|+...-
T Consensus 6 f~~np~~NP~Tgr~Ik~~gp 25 (37)
T PF08793_consen 6 FHRNPTVNPITGRKIKPGGP 25 (37)
T ss_pred HHhCCCCCCCCCCcCCCCCh
Confidence 55555789999999986543
No 150
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=30.09 E-value=21 Score=22.52 Aligned_cols=13 Identities=31% Similarity=0.669 Sum_probs=9.6
Q ss_pred cccccccccccCc
Q 009461 38 YHCPVLNKVFTEF 50 (534)
Q Consensus 38 ~~CPVt~k~ft~~ 50 (534)
|.|.+|.+.|++.
T Consensus 1 ~~C~~C~~~f~s~ 13 (25)
T PF12874_consen 1 FYCDICNKSFSSE 13 (25)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCCcCCH
Confidence 6788888887754
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.05 E-value=31 Score=38.01 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=28.4
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
-.||||-..+-..+.-+.-..|-|-|--.|+.+
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~ 208 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMK 208 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhh
Confidence 469999999999888788888999998888865
No 152
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=29.94 E-value=82 Score=33.79 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=44.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCCCCCCccccccc
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLEF 109 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP~n~~~r~~~~f 109 (534)
...+|-||-..+| .+++-||||-+|.-|--+|.---+...|++|-. +-|-|.+-|-...+--+..+|
T Consensus 60 en~~C~ICA~~~T----Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrT---E~e~V~fT~~~~~DI~D~~~~ 126 (493)
T COG5236 60 ENMNCQICAGSTT----YSARYPCGHQICHACAVRLRALYMQKGCPLCRT---ETEAVVFTASSPADITDRRQW 126 (493)
T ss_pred ccceeEEecCCce----EEEeccCCchHHHHHHHHHHHHHhccCCCcccc---ccceEEEecCCCCcchhHhhh
Confidence 4578999987776 568899999999999877643222237999964 445566666544443333333
No 153
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.71 E-value=36 Score=23.99 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=6.5
Q ss_pred ccCCCCcC
Q 009461 79 KELLTDEP 86 (534)
Q Consensus 79 ~clv~~~~ 86 (534)
.||+|+.+
T Consensus 20 ~CP~Cg~~ 27 (34)
T cd00729 20 KCPICGAP 27 (34)
T ss_pred cCcCCCCc
Confidence 79999874
No 154
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=27.23 E-value=19 Score=27.42 Aligned_cols=12 Identities=17% Similarity=0.529 Sum_probs=7.4
Q ss_pred cCCcccCCCCcC
Q 009461 75 TKNWKELLTDEP 86 (534)
Q Consensus 75 ~k~~~clv~~~~ 86 (534)
+..|+||+|+.+
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 457999999864
No 155
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.09 E-value=24 Score=23.61 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=6.6
Q ss_pred ccccccccccC
Q 009461 39 HCPVLNKVFTE 49 (534)
Q Consensus 39 ~CPVt~k~ft~ 49 (534)
.||.|+++...
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 46666666643
No 156
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=26.80 E-value=64 Score=28.10 Aligned_cols=47 Identities=11% Similarity=0.268 Sum_probs=32.8
Q ss_pred EEeecCCCCccccccccccccCceeE-------------EEEecCCeeecHHHHHHHhhc
Q 009461 28 LTFHKNAEGEYHCPVLNKVFTEFTHI-------------VAVKTTGNVFCFEAIKELNIK 74 (534)
Q Consensus 28 l~f~~n~~~~~~CPVt~k~ft~~t~i-------------v~ik~cG~V~s~~~v~~l~~k 74 (534)
+||.+-..+.-.|++|+..+.+-... -..+|.|-++|..|+.++.+.
T Consensus 25 ~h~~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~~~i~~ 84 (93)
T COG2174 25 IHYEKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCVRERIKR 84 (93)
T ss_pred EeeeeccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHHHHHHHH
Confidence 45555445566799998887653322 224579999999999998754
No 157
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.55 E-value=20 Score=27.61 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=10.2
Q ss_pred cccccccccccc
Q 009461 37 EYHCPVLNKVFT 48 (534)
Q Consensus 37 ~~~CPVt~k~ft 48 (534)
.-+||||...|+
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 458999999997
No 158
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=26.13 E-value=81 Score=25.13 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=39.1
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCC
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 90 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~ 90 (534)
.|-.|.+.+-..+.-.+|-+--+-||.+|.+.+- ...||.||-.|.+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l----~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML----NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh----cCcCcCCCCccccC
Confidence 4777888888888778888889999999999853 23899999888653
No 159
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=25.66 E-value=25 Score=28.03 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=17.6
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
.-.|++|.+.|+-..+--.=+.||.||+.+|..+
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 3579999999975544444578999999777654
No 160
>PF04641 Rtf2: Rtf2 RING-finger
Probab=25.35 E-value=1.1e+02 Score=31.10 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=39.7
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCC----CCCCcEEecCCCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF----TKEDLITIQNPNA 100 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f----~~~DiI~LqDP~n 100 (534)
.+|+++...|.. .|| .-.-|++|.+++|=++.+..+.. ..-.+.| +-+|||.|+--.|
T Consensus 35 ~~CaLS~~pL~~--PiV-~d~~G~LynKeaile~Ll~~~~~--~~~~~~~~hI~~LKDl~~l~~~~n 96 (260)
T PF04641_consen 35 THCALSQQPLED--PIV-SDRLGRLYNKEAILEFLLDKKKN--KDLPKTFSHIKSLKDLVELKFTKN 96 (260)
T ss_pred CcccCcCCccCC--Cee-eCCCCeeEcHHHHHHHHHhcCcC--CCCccccccccCccceeeEEeEec
Confidence 479999999987 343 55679999999999887755311 1122222 4689988875444
No 161
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=25.33 E-value=19 Score=38.08 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=34.8
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCc
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDE 85 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~ 85 (534)
..|++|..-|.+.|.|+ -|=|-||..||-+.-...+ -||.|+.
T Consensus 16 itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~--~CP~C~i 58 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESK--YCPTCDI 58 (331)
T ss_pred eehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhc--cCCccce
Confidence 57999999999988654 6899999999987554443 7999974
No 162
>PHA00733 hypothetical protein
Probab=25.07 E-value=57 Score=29.85 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=11.0
Q ss_pred CcccCCCCcCCCCCC
Q 009461 77 NWKELLTDEPFTKED 91 (534)
Q Consensus 77 ~~~clv~~~~f~~~D 91 (534)
.+.|.+|++.|...+
T Consensus 99 ~~~C~~CgK~F~~~~ 113 (128)
T PHA00733 99 SKVCPVCGKEFRNTD 113 (128)
T ss_pred CccCCCCCCccCCHH
Confidence 358888888887644
No 163
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=24.97 E-value=22 Score=25.50 Aligned_cols=13 Identities=0% Similarity=-0.409 Sum_probs=8.6
Q ss_pred cCCcccCCCCcCC
Q 009461 75 TKNWKELLTDEPF 87 (534)
Q Consensus 75 ~k~~~clv~~~~f 87 (534)
.....|-+|+.++
T Consensus 19 ~~~~~Cd~cg~~L 31 (36)
T PF05191_consen 19 KVEGVCDNCGGEL 31 (36)
T ss_dssp SSTTBCTTTTEBE
T ss_pred CCCCccCCCCCee
Confidence 3345788888755
No 164
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.54 E-value=35 Score=38.06 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=32.5
Q ss_pred cccccccccccC------ceeE-------EEEecCCeeecHHHHHHHhhccCCcccCCCCcCC
Q 009461 38 YHCPVLNKVFTE------FTHI-------VAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 87 (534)
Q Consensus 38 ~~CPVt~k~ft~------~t~i-------v~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f 87 (534)
--|++|....-= -++. -.+.||-|||.-.|+++-.-.-| +.||+|--++
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk-l~CPvCR~pL 633 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK-LICPVCRCPL 633 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc-ccCCccCCCC
Confidence 469999865421 1111 12459999999999998543223 4899997665
No 165
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.46 E-value=27 Score=31.27 Aligned_cols=13 Identities=23% Similarity=0.559 Sum_probs=10.2
Q ss_pred ccccccccccccC
Q 009461 37 EYHCPVLNKVFTE 49 (534)
Q Consensus 37 ~~~CPVt~k~ft~ 49 (534)
+.+||.|++-|-.
T Consensus 9 KR~Cp~CG~kFYD 21 (108)
T PF09538_consen 9 KRTCPSCGAKFYD 21 (108)
T ss_pred cccCCCCcchhcc
Confidence 5789999888853
No 166
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=24.29 E-value=34 Score=38.07 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=25.4
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEP 86 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~ 86 (534)
...|+|++|+-+.....- -+..++-.--.++. + +..|.||+|+.+
T Consensus 423 ~~~~~c~~c~~~yd~~~g----~~~~~~~~gt~~~~--l-p~~~~cp~c~~~ 467 (479)
T PRK05452 423 GPRMQCSVCQWIYDPAKG----EPMQDVAPGTPWSE--V-PDNFLCPECSLG 467 (479)
T ss_pred CCeEEECCCCeEECCCCC----CcccCCCCCCChhh--C-CCCCcCcCCCCc
Confidence 357999999876654310 01122222223344 3 347999999975
No 167
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=24.26 E-value=36 Score=23.17 Aligned_cols=15 Identities=33% Similarity=0.673 Sum_probs=11.5
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
+.|.|.+|.+.|++.
T Consensus 2 ~~~~C~~C~~~~~~~ 16 (35)
T smart00451 2 GGFYCKLCNVTFTDE 16 (35)
T ss_pred cCeEccccCCccCCH
Confidence 457888888888854
No 168
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.19 E-value=27 Score=32.22 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=10.6
Q ss_pred ccccccccccccC
Q 009461 37 EYHCPVLNKVFTE 49 (534)
Q Consensus 37 ~~~CPVt~k~ft~ 49 (534)
+++||.|++-|-.
T Consensus 9 Kr~Cp~cg~kFYD 21 (129)
T TIGR02300 9 KRICPNTGSKFYD 21 (129)
T ss_pred cccCCCcCccccc
Confidence 5789999998864
No 169
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=24.17 E-value=86 Score=23.81 Aligned_cols=44 Identities=11% Similarity=0.002 Sum_probs=31.3
Q ss_pred ccccccccccCceeEEEEecCC-----eeecHHHHHHHhhccCCcccCCCC
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTG-----NVFCFEAIKELNIKTKNWKELLTD 84 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG-----~V~s~~~v~~l~~k~k~~~clv~~ 84 (534)
+|-||.-..++... .+.||. +.+-.+|+++-........|++|.
T Consensus 1 ~CrIC~~~~~~~~~--l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDP--LVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCe--eEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 47777774555544 368875 578899999987666556899884
No 170
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=23.90 E-value=62 Score=34.35 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=33.7
Q ss_pred ccccccccccccCceeEEEEe----cCCeeecHHHHHHHhhcc-----CCcccCCCCcCCCCCCcEE
Q 009461 37 EYHCPVLNKVFTEFTHIVAVK----TTGNVFCFEAIKELNIKT-----KNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik----~cG~V~s~~~v~~l~~k~-----k~~~clv~~~~f~~~DiI~ 94 (534)
+.+|-+|..+-|....+-.|. -.-++...+|+.+|.... ..|+||+|++.=.-.-.|.
T Consensus 235 rlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~ 301 (415)
T COG5533 235 RLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRME 301 (415)
T ss_pred hhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEE
Confidence 467888876544332222211 123444789998875432 3699999997665444433
No 171
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=23.27 E-value=33 Score=40.23 Aligned_cols=33 Identities=18% Similarity=0.488 Sum_probs=24.1
Q ss_pred cccccccccccCceeEEEE-----ecCCeeecHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAV-----KTTGNVFCFEAIKE 70 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~i-----k~cG~V~s~~~v~~ 70 (534)
-.|..|.+.|+..++.+.. |.||.|||..|-..
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSn 498 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITK 498 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCC
Confidence 4699999999753321222 67999999999864
No 172
>PLN02436 cellulose synthase A
Probab=23.18 E-value=60 Score=39.62 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=41.5
Q ss_pred ccccccccccc---cCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 37 EYHCPVLNKVF---TEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k~f---t~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
..+|-||+... -+.--+||---||--+|..|+ ++..+..+-.||.|...|++
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchhh
Confidence 45999999874 334467877889999999999 55677777899999999983
No 173
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=22.44 E-value=61 Score=26.17 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=15.7
Q ss_pred ccCCCCc-CCCC--CCcEEecCCCC
Q 009461 79 KELLTDE-PFTK--EDLITIQNPNA 100 (534)
Q Consensus 79 ~clv~~~-~f~~--~DiI~LqDP~n 100 (534)
.||+|+- .|++ .++|.|.||++
T Consensus 17 ~CP~Cgs~~~T~~W~G~viI~dPe~ 41 (61)
T PRK08351 17 RCPVCGSRDLSDEWFDLVIIIDVEN 41 (61)
T ss_pred cCCCCcCCccccccccEEEEeCCcH
Confidence 6999984 3443 35788999975
No 174
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=22.04 E-value=17 Score=42.17 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=43.3
Q ss_pred ecCCCCccccccccccccCceeEEE-------EecCCeeecHHHHH---------HHhhccCCcccCCCCcCCCC
Q 009461 31 HKNAEGEYHCPVLNKVFTEFTHIVA-------VKTTGNVFCFEAIK---------ELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 31 ~~n~~~~~~CPVt~k~ft~~t~iv~-------ik~cG~V~s~~~v~---------~l~~k~k~~~clv~~~~f~~ 89 (534)
.+.++|.|.|-.|-|+|...+.+.- -||.-|.+|.++++ +|---.|.+.|-.|++.|.-
T Consensus 888 ~kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSH 962 (1007)
T KOG3623|consen 888 AKTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSH 962 (1007)
T ss_pred ccCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhccc
Confidence 4456788999999999987765431 34667999999885 33333567889999998874
No 175
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.95 E-value=44 Score=39.71 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=27.1
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHHHhh
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI 73 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~ 73 (534)
.|-+|.+.|-.. -+++-+|||-|-++|+.+-.+
T Consensus 819 ~C~~C~~~ll~~--pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 819 SCDHCGRPLLIK--PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred chHHhcchhhcC--cceeeeccchHHHHHHHHHHH
Confidence 799999998765 456789999999999987543
No 176
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=84 Score=34.25 Aligned_cols=78 Identities=24% Similarity=0.332 Sum_probs=52.7
Q ss_pred eEEeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCCCCCC----
Q 009461 27 PLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALD---- 102 (534)
Q Consensus 27 ~l~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP~n~~---- 102 (534)
..+|.+-+ -+||..+.-.|..- | --..|.||-+.+|--+..+-+ .-|++|+++.-+|+|.|.=-.|.+
T Consensus 32 ~~~FkrLP--~~hC~lt~~Pfe~P---v-C~~dg~vFd~~~Ivp~lkk~g--~nP~tG~kl~~~dLIkL~F~Kns~geyh 103 (518)
T KOG0883|consen 32 RTQFKRLP--FNHCSLTMLPFEDP---V-CTVDGTVFDLTAIVPWLKKHG--TNPITGQKLDGKDLIKLKFHKNSEGEYH 103 (518)
T ss_pred ccccccCC--hhhceeccccccCc---c-cccCCcEEeeehhhHHHHHcC--CCCCCCCccccccceeeeeccCCCCccc
Confidence 34444432 46899999999754 2 234699999999887665544 668899999999999886444433
Q ss_pred ----ccccccchhh
Q 009461 103 ----TKVTLEFDHV 112 (534)
Q Consensus 103 ----~r~~~~f~~v 112 (534)
-+....|-||
T Consensus 104 cPvlfk~FT~~sHI 117 (518)
T KOG0883|consen 104 CPVLFKVFTRFSHI 117 (518)
T ss_pred CceeeeeecccceE
Confidence 2334556665
No 177
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=21.82 E-value=58 Score=28.18 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=9.3
Q ss_pred Ccccccccccc
Q 009461 36 GEYHCPVLNKV 46 (534)
Q Consensus 36 ~~~~CPVt~k~ 46 (534)
..|.||.|++.
T Consensus 34 ~~~~Cp~C~~~ 44 (89)
T COG1997 34 AKHVCPFCGRT 44 (89)
T ss_pred cCCcCCCCCCc
Confidence 46899999986
No 178
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=21.40 E-value=46 Score=34.52 Aligned_cols=59 Identities=31% Similarity=0.521 Sum_probs=42.5
Q ss_pred EEecCCeeecHHHHH-HHhhccCCc-------------ccCCCCcCCCCCCcEEecCCCCCCccccccchhhhcC
Q 009461 55 AVKTTGNVFCFEAIK-ELNIKTKNW-------------KELLTDEPFTKEDLITIQNPNALDTKVTLEFDHVKKG 115 (534)
Q Consensus 55 ~ik~cG~V~s~~~v~-~l~~k~k~~-------------~clv~~~~f~~~DiI~LqDP~n~~~r~~~~f~~vk~~ 115 (534)
++-..||+.+.++.. -+++.+.|| .|+.-|.--+-.|||+|.|-.....++ .|.-|+++
T Consensus 93 ~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTTtDIIPi~~ge~~ag~t--DlERL~~g 165 (330)
T COG1548 93 VVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTTTDIIPIKDGEAAAGKT--DLERLKNG 165 (330)
T ss_pred EEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcccceEeecchhhhhccc--hHHHHhcC
Confidence 345568888887776 334555555 388888888999999999987555554 46677776
No 179
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.08 E-value=52 Score=30.51 Aligned_cols=26 Identities=42% Similarity=0.726 Sum_probs=20.7
Q ss_pred CCCCCCCCccCCCCceeEEeecCCCCccccccccccc
Q 009461 11 GKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVF 47 (534)
Q Consensus 11 ~~~Pvtg~pl~lKDLi~l~f~~n~~~~~~CPVt~k~f 47 (534)
..||.-|-|| |- .+|+.+||||...+
T Consensus 29 ~hCp~Cg~PL---------F~--KdG~v~CPvC~~~~ 54 (131)
T COG1645 29 KHCPKCGTPL---------FR--KDGEVFCPVCGYRE 54 (131)
T ss_pred hhCcccCCcc---------ee--eCCeEECCCCCceE
Confidence 3589999887 66 46899999999743
No 180
>PRK12496 hypothetical protein; Provisional
Probab=21.06 E-value=53 Score=31.34 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=8.9
Q ss_pred ccCCCCcCCCCC
Q 009461 79 KELLTDEPFTKE 90 (534)
Q Consensus 79 ~clv~~~~f~~~ 90 (534)
.||+||-+..++
T Consensus 145 ~C~~CG~~~~r~ 156 (164)
T PRK12496 145 VCEICGSPVKRK 156 (164)
T ss_pred cCCCCCChhhhc
Confidence 588888877653
No 181
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.01 E-value=32 Score=35.61 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=36.2
Q ss_pred ccccccccccccCceeE------EEEecCCeeecHHHHHHHhhccCCcccCCCCcCC
Q 009461 37 EYHCPVLNKVFTEFTHI------VAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPF 87 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~i------v~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f 87 (534)
.-+|.||.+.|-....- .+--.|+|||-+.||.--++-.|---||-|-+..
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 45899999988644310 1233699999999999877755545799996543
No 182
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.60 E-value=49 Score=24.77 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=10.1
Q ss_pred hccCCcccCCCCcCCC
Q 009461 73 IKTKNWKELLTDEPFT 88 (534)
Q Consensus 73 ~k~k~~~clv~~~~f~ 88 (534)
++.| .|++|+.||+
T Consensus 6 lp~K--~C~~C~rpf~ 19 (42)
T PF10013_consen 6 LPSK--ICPVCGRPFT 19 (42)
T ss_pred CCCC--cCcccCCcch
Confidence 4455 6888888886
No 183
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.37 E-value=81 Score=31.36 Aligned_cols=39 Identities=13% Similarity=-0.051 Sum_probs=28.7
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.|++|...+... ...+|..|.+.|..- ...|+.|+.++.
T Consensus 7 ~C~~C~~~~~~~---------~~~lC~~C~~~l~~~--~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS---------HWGICSVCSRALRTL--KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC---------CCcccHHHHhhCCcc--cCcCccCCCcCC
Confidence 699999877421 345899999987643 248999998764
Done!