Query 009461
Match_columns 534
No_of_seqs 390 out of 1698
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zkc_A Peptidyl-prolyl CIS-tra 100.0 2.6E-52 9E-57 402.4 20.5 174 280-453 14-188 (197)
2 3bo7_A Peptidyl-prolyl CIS-tra 100.0 2.3E-52 7.9E-57 404.7 19.7 176 281-456 2-189 (201)
3 2ok3_A Peptidyl-prolyl CIS-tra 100.0 6.5E-51 2.2E-55 381.9 19.0 159 287-445 2-161 (161)
4 2poe_A Cyclophilin-like protei 100.0 1.2E-50 4E-55 387.9 19.1 165 283-447 14-182 (185)
5 2b71_A Cyclophilin-like protei 100.0 2.3E-49 7.8E-54 381.8 18.2 159 284-442 37-195 (196)
6 2x7k_A Peptidyl-prolyl CIS-tra 100.0 7.7E-49 2.6E-53 369.5 18.5 155 285-439 11-165 (166)
7 2fu0_A Cyclophilin, putative; 100.0 7.7E-49 2.6E-53 367.4 18.2 155 285-439 5-159 (160)
8 2hq6_A Serologically defined c 100.0 2.1E-48 7.1E-53 372.3 19.3 163 282-445 21-185 (185)
9 3bkp_A Cyclophilin; malaria, i 100.0 9.5E-49 3.2E-53 386.4 16.9 167 282-449 18-202 (232)
10 2a2n_A Peptidylprolyl isomeras 100.0 2.9E-48 9.8E-53 368.7 18.8 156 283-438 19-175 (176)
11 2k7n_A Peptidyl-prolyl CIS-tra 100.0 6.7E-48 2.3E-52 373.1 17.8 160 285-444 11-170 (203)
12 3ich_A Peptidyl-prolyl CIS-tra 100.0 9.9E-48 3.4E-52 368.5 18.0 162 285-447 17-187 (188)
13 1w74_A Peptidyl-prolyl CIS-tra 100.0 1.5E-46 5.1E-51 361.0 19.1 154 283-439 21-191 (191)
14 1a58_A Cyclophilin; isomerase, 100.0 3E-46 1E-50 355.2 20.3 155 285-440 8-177 (177)
15 2wfi_A Peptidyl-prolyl CIS-tra 100.0 3.2E-46 1.1E-50 355.6 20.5 155 284-439 10-179 (179)
16 1mzw_A Cyclophilin H, U-snRNP- 100.0 2.4E-46 8.2E-51 355.9 18.1 147 292-439 22-177 (177)
17 2he9_A NK-tumor recognition pr 100.0 1.1E-45 3.7E-50 355.4 20.2 156 284-440 20-190 (192)
18 2cmt_A Peptidyl-prolyl CIS-tra 100.0 1.4E-45 4.8E-50 349.0 19.8 154 285-440 12-172 (172)
19 2haq_A Cyclophilin; rotamase, 100.0 8.3E-46 2.8E-50 350.5 18.1 154 284-439 12-172 (172)
20 2r99_A Peptidyl-prolyl CIS-tra 100.0 1.9E-45 6.3E-50 348.6 20.5 154 285-440 13-173 (173)
21 2igv_A Peptidyl-prolyl CIS-tra 100.0 1.8E-45 6.2E-50 348.7 19.5 147 292-440 15-172 (173)
22 2z6w_A Peptidyl-prolyl CIS-tra 100.0 2.6E-45 9E-50 345.1 20.1 153 285-439 5-164 (165)
23 1qng_A Peptidyl-prolyl CIS-tra 100.0 1.5E-45 5.1E-50 348.3 18.3 146 292-439 15-170 (170)
24 3pmp_A Cyclophilin A; peptidyl 100.0 3E-45 1E-49 344.4 20.2 147 292-440 14-164 (164)
25 4fru_A Cyclophilin B, peptidyl 100.0 1.2E-45 4E-50 353.5 17.7 160 284-444 13-181 (185)
26 2poy_A Peptidyl-prolyl CIS-tra 100.0 9.5E-45 3.2E-49 347.2 18.7 152 285-438 21-186 (186)
27 2c3b_A Ppiase, cyclophilin; is 100.0 1.2E-45 4E-50 349.6 12.0 149 290-439 17-172 (172)
28 3s6m_A Peptidyl-prolyl CIS-tra 100.0 9.9E-45 3.4E-49 341.7 15.9 152 285-439 3-167 (167)
29 1lop_A Cyclophilin A; rotamase 100.0 5.3E-45 1.8E-49 342.7 13.5 149 288-439 2-163 (164)
30 2ose_A Probable peptidyl-proly 100.0 5.3E-45 1.8E-49 360.3 13.8 158 285-445 16-212 (234)
31 1z81_A Cyclophilin; structural 100.0 1.9E-44 6.3E-49 354.7 17.3 147 292-439 71-229 (229)
32 3rdd_A Peptidyl-prolyl CIS-tra 100.0 6.6E-44 2.3E-48 341.0 19.1 147 292-440 34-184 (184)
33 3k2c_A Peptidyl-prolyl CIS-tra 100.0 1.2E-43 4.2E-48 341.4 20.5 155 284-440 28-191 (193)
34 1v9t_A Cyclophilin B; beta bar 100.0 4.3E-44 1.5E-48 337.2 15.9 152 285-439 4-165 (166)
35 1ihg_A Cyclophilin 40; ppiase 100.0 2.1E-42 7.3E-47 360.5 18.8 154 287-442 17-187 (370)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 1.1E-37 3.7E-42 324.6 10.8 147 283-441 168-356 (369)
37 2bay_A PRE-mRNA splicing facto 98.3 3.6E-07 1.2E-11 71.7 4.5 55 37-96 3-57 (61)
38 1g25_A CDK-activating kinase a 98.3 5.9E-07 2E-11 70.2 4.8 59 36-95 2-61 (65)
39 4ap4_A E3 ubiquitin ligase RNF 98.3 7.7E-07 2.6E-11 78.2 5.2 88 3-95 41-131 (133)
40 2xeu_A Ring finger protein 4; 98.0 5.1E-06 1.8E-10 64.0 4.4 58 36-95 2-62 (64)
41 2ct2_A Tripartite motif protei 97.9 5.2E-06 1.8E-10 68.1 3.7 61 35-95 13-74 (88)
42 3htk_C E3 SUMO-protein ligase 97.9 1E-05 3.6E-10 80.7 6.1 85 3-94 149-237 (267)
43 3ng2_A RNF4, snurf, ring finge 97.9 5.4E-06 1.8E-10 65.4 3.1 59 35-95 8-69 (71)
44 2kre_A Ubiquitin conjugation f 97.9 1.8E-05 6.1E-10 67.9 6.0 53 36-94 28-80 (100)
45 2djb_A Polycomb group ring fin 97.9 1.3E-05 4.3E-10 63.9 4.7 54 36-94 14-67 (72)
46 1t1h_A Gspef-atpub14, armadill 97.8 2.7E-05 9.2E-10 62.7 6.1 54 36-94 7-60 (78)
47 2kr4_A Ubiquitin conjugation f 97.8 1.7E-05 5.7E-10 65.9 4.9 53 36-94 13-65 (85)
48 1wgm_A Ubiquitin conjugation f 97.8 2.3E-05 7.7E-10 67.0 5.6 54 35-94 20-74 (98)
49 2ysl_A Tripartite motif-contai 97.8 3E-05 1E-09 61.4 5.5 54 35-92 18-72 (73)
50 2ecy_A TNF receptor-associated 97.7 2.7E-05 9.3E-10 60.8 4.6 53 35-92 13-65 (66)
51 2ecw_A Tripartite motif-contai 97.7 5.4E-05 1.9E-09 61.2 6.3 56 35-94 17-76 (85)
52 2yu4_A E3 SUMO-protein ligase 97.7 3.4E-05 1.2E-09 65.1 5.0 56 36-94 6-68 (94)
53 2yur_A Retinoblastoma-binding 97.7 2.2E-05 7.7E-10 63.0 3.7 55 36-93 14-68 (74)
54 2ect_A Ring finger protein 126 97.7 2.2E-05 7.5E-10 63.3 3.3 57 35-94 13-69 (78)
55 2f42_A STIP1 homology and U-bo 97.6 4.2E-05 1.4E-09 72.4 5.0 54 36-94 105-158 (179)
56 3ztg_A E3 ubiquitin-protein li 97.6 6.1E-05 2.1E-09 62.5 5.3 49 36-88 12-61 (92)
57 2ea6_A Ring finger protein 4; 97.6 3.5E-05 1.2E-09 60.1 3.4 53 35-89 13-68 (69)
58 2ckl_B Ubiquitin ligase protei 97.6 6E-05 2E-09 69.6 5.2 53 37-93 54-106 (165)
59 2ecm_A Ring finger and CHY zin 97.6 4.6E-05 1.6E-09 57.0 3.6 51 36-88 4-54 (55)
60 2c2l_A CHIP, carboxy terminus 97.6 4.2E-05 1.4E-09 75.3 4.1 54 36-94 207-260 (281)
61 2csy_A Zinc finger protein 183 97.5 0.00015 5.1E-09 58.9 6.4 48 35-88 13-60 (81)
62 2d8t_A Dactylidin, ring finger 97.5 5E-05 1.7E-09 60.2 3.3 53 35-93 13-65 (71)
63 2y43_A E3 ubiquitin-protein li 97.5 9.2E-05 3.1E-09 62.4 4.8 52 37-93 22-73 (99)
64 1x4j_A Ring finger protein 38; 97.5 0.00017 5.9E-09 57.6 6.1 66 21-89 5-72 (75)
65 2ecv_A Tripartite motif-contai 97.4 8E-05 2.7E-09 60.2 3.7 55 35-93 17-75 (85)
66 4ap4_A E3 ubiquitin ligase RNF 97.4 0.00011 3.6E-09 64.4 4.5 60 35-96 5-67 (133)
67 3lrq_A E3 ubiquitin-protein li 97.4 0.00011 3.6E-09 62.5 4.1 54 37-94 22-75 (100)
68 2ep4_A Ring finger protein 24; 97.4 0.00027 9.1E-09 56.2 6.1 51 36-89 14-64 (74)
69 2egp_A Tripartite motif-contai 97.4 5.9E-05 2E-09 60.6 2.0 55 35-93 10-69 (79)
70 2ckl_A Polycomb group ring fin 97.3 0.00024 8.2E-09 60.9 5.6 50 36-90 14-63 (108)
71 2kiz_A E3 ubiquitin-protein li 97.3 0.0003 1E-08 55.1 5.4 52 35-89 12-63 (69)
72 2ecn_A Ring finger protein 141 97.3 0.00011 3.6E-09 57.9 2.4 52 35-93 13-64 (70)
73 3hct_A TNF receptor-associated 97.3 0.00023 7.8E-09 62.1 4.7 59 30-93 11-69 (118)
74 1jm7_A BRCA1, breast cancer ty 97.2 0.00013 4.6E-09 62.4 3.1 53 37-93 21-74 (112)
75 2ysj_A Tripartite motif-contai 97.2 0.00032 1.1E-08 54.0 5.0 45 35-83 18-63 (63)
76 3fl2_A E3 ubiquitin-protein li 97.2 0.00027 9.2E-09 62.1 4.9 48 37-89 52-99 (124)
77 1iym_A EL5; ring-H2 finger, ub 97.2 0.00019 6.4E-09 53.7 3.1 51 36-88 4-54 (55)
78 2l0b_A E3 ubiquitin-protein li 97.2 0.00048 1.6E-08 57.4 5.5 51 36-89 39-89 (91)
79 2bay_A PRE-mRNA splicing facto 97.1 7E-05 2.4E-09 58.5 0.2 31 2-32 30-60 (61)
80 4ayc_A E3 ubiquitin-protein li 97.1 0.00049 1.7E-08 61.7 5.0 47 37-89 53-99 (138)
81 1jm7_B BARD1, BRCA1-associated 97.0 0.00013 4.4E-09 63.6 0.6 50 37-93 22-71 (117)
82 1z6u_A NP95-like ring finger p 97.0 0.00062 2.1E-08 62.3 5.1 50 37-91 78-127 (150)
83 1chc_A Equine herpes virus-1 r 96.9 0.0006 2.1E-08 53.1 3.9 48 36-88 4-51 (68)
84 1v87_A Deltex protein 2; ring- 96.9 0.00087 3E-08 57.6 4.7 55 36-90 24-95 (114)
85 1rmd_A RAG1; V(D)J recombinati 96.8 0.00076 2.6E-08 58.4 4.1 53 36-93 22-74 (116)
86 3hcs_A TNF receptor-associated 96.7 0.0013 4.4E-08 60.8 5.1 60 29-93 10-69 (170)
87 2vje_B MDM4 protein; proto-onc 96.7 0.0016 5.4E-08 50.8 4.8 53 37-95 7-60 (63)
88 2y1n_A E3 ubiquitin-protein li 96.6 0.00089 3E-08 70.4 3.6 54 37-95 332-385 (389)
89 1e4u_A Transcriptional repress 96.6 0.00069 2.4E-08 55.4 2.1 56 35-93 9-66 (78)
90 3l11_A E3 ubiquitin-protein li 96.6 0.00062 2.1E-08 58.9 1.8 47 37-88 15-61 (115)
91 2ecj_A Tripartite motif-contai 96.5 0.0015 5.1E-08 49.0 3.3 45 35-83 13-58 (58)
92 1wim_A KIAA0161 protein; ring 96.5 0.00054 1.8E-08 57.3 0.7 50 36-86 4-61 (94)
93 2yho_A E3 ubiquitin-protein li 96.4 0.0023 7.8E-08 52.2 3.9 60 37-108 18-78 (79)
94 2vje_A E3 ubiquitin-protein li 96.3 0.0046 1.6E-07 48.3 4.7 54 36-95 7-61 (64)
95 2ecl_A Ring-box protein 2; RNF 96.2 0.0021 7.3E-08 52.4 2.7 52 38-91 16-78 (81)
96 3knv_A TNF receptor-associated 96.2 0.0013 4.3E-08 59.7 1.3 51 35-90 29-79 (141)
97 2ecg_A Baculoviral IAP repeat- 96.2 0.0018 6.3E-08 51.9 2.0 44 37-90 25-69 (75)
98 1bor_A Transcription factor PM 95.7 0.002 6.7E-08 48.8 0.3 46 35-89 4-49 (56)
99 4ic3_A E3 ubiquitin-protein li 95.6 0.005 1.7E-07 49.2 2.5 43 37-89 24-67 (74)
100 2ea5_A Cell growth regulator w 95.5 0.0082 2.8E-07 47.5 3.3 52 35-98 13-65 (68)
101 3vk6_A E3 ubiquitin-protein li 95.1 0.018 6.1E-07 49.3 4.3 52 38-93 2-53 (101)
102 3dpl_R Ring-box protein 1; ubi 94.7 0.033 1.1E-06 48.0 5.0 68 19-88 19-100 (106)
103 3kop_A Uncharacterized protein 94.0 0.25 8.7E-06 46.4 9.5 110 286-416 22-165 (188)
104 3t6p_A Baculoviral IAP repeat- 93.9 0.018 6.3E-07 59.6 1.8 44 36-89 294-338 (345)
105 2nnz_A Hypothetical protein; b 92.4 0.23 7.9E-06 45.6 6.5 100 288-416 32-142 (153)
106 2d8s_A Cellular modulator of i 92.0 0.13 4.5E-06 42.0 4.0 55 35-91 13-72 (80)
107 3i2d_A E3 SUMO-protein ligase 91.6 0.13 4.6E-06 53.5 4.5 54 38-94 250-305 (371)
108 4a0k_B E3 ubiquitin-protein li 90.8 0.048 1.6E-06 48.0 0.2 51 37-89 48-112 (117)
109 2ct0_A Non-SMC element 1 homol 90.1 0.3 1E-05 39.4 4.4 49 37-88 15-63 (74)
110 4fo9_A E3 SUMO-protein ligase 89.8 0.26 8.9E-06 51.2 4.7 54 38-94 216-271 (360)
111 1wgm_A Ubiquitin conjugation f 81.4 0.57 2E-05 39.4 1.8 29 2-30 49-77 (98)
112 1vd4_A Transcription initiatio 80.6 0.49 1.7E-05 35.5 1.0 41 36-91 13-53 (62)
113 2kr4_A Ubiquitin conjugation f 79.9 0.54 1.8E-05 38.4 1.1 29 2-30 40-68 (85)
114 2kre_A Ubiquitin conjugation f 79.0 0.7 2.4E-05 39.0 1.6 28 3-30 56-83 (100)
115 3nw0_A Non-structural maintena 79.0 1.3 4.6E-05 43.2 3.8 58 37-98 180-237 (238)
116 2lv2_A Insulinoma-associated p 73.4 0.77 2.6E-05 37.5 0.3 46 36-93 27-72 (85)
117 3m62_A Ubiquitin conjugation f 70.1 3.9 0.00013 47.5 5.1 53 36-94 890-943 (968)
118 4gzn_C ZFP-57, zinc finger pro 69.0 2.4 8.2E-05 32.2 2.2 44 36-91 3-46 (60)
119 6rxn_A Rubredoxin; electron tr 68.0 1.4 4.7E-05 32.4 0.6 13 74-86 27-39 (46)
120 2eps_A POZ-, at HOOK-, and zin 67.0 3.3 0.00011 29.6 2.5 43 36-89 11-53 (54)
121 3uk3_C Zinc finger protein 217 66.6 2.7 9.4E-05 29.8 2.0 44 36-91 3-46 (57)
122 2k5c_A Uncharacterized protein 66.0 0.47 1.6E-05 39.0 -2.5 39 12-50 10-64 (95)
123 2ctu_A Zinc finger protein 483 65.9 0.72 2.5E-05 34.5 -1.4 39 36-93 17-55 (73)
124 1x6e_A Zinc finger protein 24; 65.0 3.2 0.00011 31.4 2.2 44 36-91 13-56 (72)
125 1bbo_A Human enhancer-binding 64.5 3.1 0.00011 29.5 2.0 43 37-91 1-43 (57)
126 1m3v_A FLIN4, fusion of the LI 64.0 4.7 0.00016 34.7 3.3 55 37-95 32-87 (122)
127 3mjh_B Early endosome antigen 63.8 1.9 6.7E-05 29.7 0.6 13 38-50 6-18 (34)
128 2lce_A B-cell lymphoma 6 prote 63.5 4.1 0.00014 30.8 2.6 45 35-91 15-59 (74)
129 2ctd_A Zinc finger protein 512 62.5 5 0.00017 32.8 3.1 44 35-91 32-76 (96)
130 1zx8_A Hypothetical protein TM 62.4 31 0.0011 30.8 8.5 99 288-416 15-123 (136)
131 1f2i_G Fusion of N-terminal 17 61.0 3.5 0.00012 31.0 1.7 45 35-91 17-63 (73)
132 1vyx_A ORF K3, K3RING; zinc-bi 60.1 7 0.00024 29.8 3.3 51 35-89 4-59 (60)
133 2drp_A Protein (tramtrack DNA- 58.1 5.7 0.00019 29.1 2.5 45 35-91 8-54 (66)
134 2adr_A ADR1; transcription reg 58.1 4.4 0.00015 29.1 1.8 44 37-92 2-45 (60)
135 1yuz_A Nigerythrin; rubrythrin 57.8 2.8 9.6E-05 39.9 0.8 9 78-86 187-195 (202)
136 1x5w_A Zinc finger protein 64, 56.9 4.7 0.00016 30.1 1.9 45 35-91 7-51 (70)
137 2gqj_A Zinc finger protein KIA 56.5 4.6 0.00016 32.7 1.8 46 35-92 22-69 (98)
138 2xqn_T Testin, TESS; metal-bin 56.4 38 0.0013 28.7 7.8 72 14-95 7-82 (126)
139 2xjy_A Rhombotin-2; oncoprotei 56.3 23 0.0008 30.2 6.5 55 36-94 28-84 (131)
140 2d9h_A Zinc finger protein 692 54.4 4.3 0.00015 31.0 1.2 48 36-92 6-53 (78)
141 2lt7_A Transcriptional regulat 52.1 8.5 0.00029 33.5 3.0 16 36-51 21-36 (133)
142 2ko5_A Ring finger protein Z; 51.4 13 0.00045 31.4 3.7 48 35-89 26-73 (99)
143 2cot_A Zinc finger protein 435 49.6 6.8 0.00023 29.8 1.7 46 35-92 16-61 (77)
144 2ee8_A Protein ODD-skipped-rel 49.5 14 0.00048 29.5 3.8 16 35-50 15-30 (106)
145 2yu4_A E3 SUMO-protein ligase 48.9 4 0.00014 33.6 0.3 25 3-27 35-68 (94)
146 2wbt_A B-129; zinc finger; 2.7 48.5 13 0.00043 31.1 3.4 16 75-90 98-113 (129)
147 2ej4_A Zinc finger protein ZIC 48.1 20 0.0007 27.9 4.4 29 22-50 10-38 (95)
148 2ct1_A Transcriptional repress 46.9 11 0.00037 28.6 2.5 45 36-91 14-59 (77)
149 1wjp_A Zinc finger protein 295 45.1 14 0.00049 29.7 3.2 42 36-91 15-56 (107)
150 2pv0_B DNA (cytosine-5)-methyl 43.6 14 0.00049 38.5 3.5 50 32-85 87-147 (386)
151 3o9x_A Uncharacterized HTH-typ 42.4 10 0.00035 32.6 1.9 43 38-88 3-47 (133)
152 3pwf_A Rubrerythrin; non heme 42.3 8.6 0.0003 35.5 1.5 8 79-86 155-162 (170)
153 3a1b_A DNA (cytosine-5)-methyl 42.1 28 0.00096 32.0 4.8 50 31-84 72-132 (159)
154 2yt9_A Zinc finger-containing 41.0 14 0.00048 28.8 2.4 15 36-50 6-20 (95)
155 2lvu_A Zinc finger and BTB dom 47.0 5.7 0.0002 23.2 0.0 16 37-52 2-17 (26)
156 1rut_X Flinc4, fusion protein 40.6 21 0.00072 32.8 3.9 55 37-95 32-88 (188)
157 2rgt_A Fusion of LIM/homeobox 40.5 39 0.0013 30.4 5.6 50 36-93 32-81 (169)
158 1llm_C Chimera of ZIF23-GCN4; 39.8 13 0.00045 28.9 2.0 43 37-91 3-45 (88)
159 2epr_A POZ-, at HOOK-, and zin 39.2 9.5 0.00032 26.2 1.0 16 36-51 11-26 (48)
160 2dlq_A GLI-kruppel family memb 39.0 23 0.00078 28.8 3.5 15 36-50 6-20 (124)
161 2dmd_A Zinc finger protein 64, 38.9 24 0.00081 27.5 3.4 16 35-50 6-21 (96)
162 1joc_A EEA1, early endosomal a 37.7 9.1 0.00031 33.6 0.8 33 38-70 70-102 (125)
163 2l3k_A Rhombotin-2, linker, LI 37.4 67 0.0023 27.2 6.4 85 6-99 1-92 (123)
164 1lko_A Rubrerythrin all-iron(I 37.4 9.1 0.00031 35.8 0.8 8 79-86 173-180 (191)
165 2lvt_A Zinc finger and BTB dom 42.8 7.4 0.00025 23.2 0.0 16 37-52 2-17 (29)
166 3ga8_A HTH-type transcriptiona 36.6 14 0.00049 29.3 1.8 43 37-87 2-46 (78)
167 2kmk_A Zinc finger protein GFI 36.2 15 0.00053 27.5 1.8 14 76-89 56-69 (82)
168 2cup_A Skeletal muscle LIM-pro 35.7 30 0.001 28.0 3.7 53 36-95 32-85 (101)
169 1a1h_A QGSR zinc finger peptid 34.7 18 0.00061 27.8 2.0 16 75-90 60-75 (90)
170 1ard_A Yeast transcription fac 34.3 14 0.00049 21.6 1.1 14 37-50 2-15 (29)
171 2jtn_A LIM domain-binding prot 34.3 41 0.0014 30.6 4.7 49 37-93 87-135 (182)
172 2m0f_A Zinc finger and BTB dom 34.0 13 0.00044 21.7 0.9 14 37-50 2-15 (29)
173 2csh_A Zinc finger protein 297 33.7 23 0.00078 28.5 2.6 14 76-89 64-77 (110)
174 1dvp_A HRS, hepatocyte growth 33.3 9.6 0.00033 36.3 0.2 33 38-70 162-194 (220)
175 2lvr_A Zinc finger and BTB dom 39.3 9.1 0.00031 22.7 0.0 17 37-53 3-19 (30)
176 1znf_A 31ST zinc finger from X 33.0 15 0.00052 21.2 1.0 12 38-49 2-13 (27)
177 2epq_A POZ-, at HOOK-, and zin 33.0 26 0.0009 23.3 2.5 15 36-50 9-23 (45)
178 2m0e_A Zinc finger and BTB dom 32.9 14 0.00047 21.5 0.8 14 37-50 2-15 (29)
179 1x6h_A Transcriptional repress 32.3 28 0.00097 26.3 2.8 45 36-91 14-61 (86)
180 1b8t_A Protein (CRP1); LIM dom 30.9 61 0.0021 29.7 5.3 55 13-73 10-67 (192)
181 2kvf_A Zinc finger and BTB dom 30.4 18 0.0006 21.1 1.0 14 37-50 3-16 (28)
182 1rik_A E6APC1 peptide; E6-bind 30.2 16 0.00055 21.4 0.8 14 37-50 2-15 (29)
183 1p7a_A BF3, BKLF, kruppel-like 30.1 18 0.00061 22.9 1.1 15 36-50 10-24 (37)
184 2ghf_A ZHX1, zinc fingers and 29.7 31 0.001 28.7 2.8 46 36-92 17-65 (102)
185 2kvh_A Zinc finger and BTB dom 29.6 19 0.00064 20.9 1.1 14 37-50 3-16 (27)
186 2dlk_A Novel protein; ZF-C2H2 29.6 33 0.0011 25.6 2.7 14 75-88 66-79 (79)
187 1wfk_A Zinc finger, FYVE domai 29.5 17 0.00059 29.8 1.1 33 38-70 10-42 (88)
188 2elr_A Zinc finger protein 406 29.2 19 0.00065 22.5 1.1 15 36-50 8-22 (36)
189 1klr_A Zinc finger Y-chromosom 29.1 19 0.00066 21.0 1.1 14 37-50 2-15 (30)
190 2yw8_A RUN and FYVE domain-con 29.1 15 0.0005 29.7 0.6 34 37-70 19-52 (82)
191 3mpx_A FYVE, rhogef and PH dom 29.1 12 0.0004 38.8 0.0 34 37-70 375-408 (434)
192 2kvg_A Zinc finger and BTB dom 28.8 17 0.0006 21.3 0.8 14 37-50 3-16 (27)
193 3zyq_A Hepatocyte growth facto 28.7 14 0.00048 35.4 0.5 32 39-70 166-197 (226)
194 1vfy_A Phosphatidylinositol-3- 28.6 17 0.00058 28.6 0.9 31 39-69 13-43 (73)
195 2xeu_A Ring finger protein 4; 28.5 23 0.00079 25.8 1.6 27 3-29 37-63 (64)
196 1t1h_A Gspef-atpub14, armadill 28.5 25 0.00085 27.1 1.9 13 37-49 43-55 (78)
197 2els_A Zinc finger protein 406 28.1 17 0.00059 22.8 0.7 15 36-50 8-22 (36)
198 1rim_A E6APC2 peptide; E6-bind 28.1 20 0.00067 22.4 1.0 14 37-50 2-15 (33)
199 3t7l_A Zinc finger FYVE domain 28.0 17 0.00057 30.0 0.8 33 38-70 21-53 (90)
200 1z2q_A LM5-1; membrane protein 27.9 16 0.00055 29.6 0.6 34 37-70 21-54 (84)
201 2m0d_A Zinc finger and BTB dom 27.7 21 0.0007 20.9 1.0 14 37-50 3-16 (30)
202 2elx_A Zinc finger protein 406 26.6 20 0.00067 22.2 0.8 15 36-50 6-20 (35)
203 1paa_A Yeast transcription fac 26.5 24 0.00082 20.8 1.2 13 38-50 3-15 (30)
204 2elt_A Zinc finger protein 406 25.5 21 0.00072 22.2 0.8 15 36-50 8-22 (36)
205 2epa_A Krueppel-like factor 10 25.2 20 0.00068 26.6 0.7 45 35-91 15-63 (72)
206 1x4u_A Zinc finger, FYVE domai 24.7 18 0.00063 29.2 0.5 33 38-70 15-47 (84)
207 2eod_A TNF receptor-associated 24.7 20 0.00067 26.4 0.6 41 37-91 10-51 (66)
208 2elq_A Zinc finger protein 406 24.0 23 0.00079 22.2 0.8 15 36-50 8-22 (36)
209 2elo_A Zinc finger protein 406 23.9 23 0.00077 22.3 0.7 15 36-50 8-22 (37)
210 2elp_A Zinc finger protein 406 23.9 24 0.00082 22.3 0.8 15 36-50 8-22 (37)
211 4rxn_A Rubredoxin; electron tr 23.9 36 0.0012 25.7 1.9 19 75-95 34-52 (54)
212 1wig_A KIAA1808 protein; LIM d 23.8 60 0.002 24.9 3.3 37 36-74 30-66 (73)
213 2jny_A Uncharacterized BCR; st 23.5 30 0.001 27.2 1.5 21 79-99 30-50 (67)
214 2elv_A Zinc finger protein 406 23.4 24 0.00083 22.1 0.8 15 36-50 8-22 (36)
215 1y02_A CARP2, FYVE-ring finger 23.2 20 0.0007 31.3 0.5 33 38-70 20-52 (120)
216 2jne_A Hypothetical protein YF 23.2 10 0.00036 32.1 -1.3 40 38-88 33-72 (101)
217 2khf_A PLNJ; anti-microbial, b 22.7 28 0.00095 21.8 0.8 15 311-325 4-18 (26)
218 3ng2_A RNF4, snurf, ring finge 22.4 32 0.0011 25.7 1.4 26 3-28 44-69 (71)
219 2lcq_A Putative toxin VAPC6; P 22.2 27 0.00091 31.5 1.0 11 79-89 150-160 (165)
220 2kfq_A FP1; protein, de novo p 22.2 20 0.00069 22.1 0.2 12 38-49 3-14 (32)
221 3k1l_B Fancl; UBC, ring, RWD, 21.9 14 0.00046 38.4 -1.1 54 35-88 306-372 (381)
222 3j21_d 50S ribosomal protein L 21.9 41 0.0014 28.0 2.0 37 37-74 33-82 (89)
223 1dum_A Magainin 2; antibiotic, 21.8 22 0.00075 22.3 0.3 9 489-497 1-9 (26)
224 1srk_A Zinc finger protein ZFP 21.7 28 0.00094 21.6 0.8 15 36-50 6-20 (35)
225 2ytb_A Zinc finger protein 32; 20.7 38 0.0013 21.9 1.4 15 36-50 10-24 (42)
No 1
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=2.6e-52 Score=402.39 Aligned_cols=174 Identities=63% Similarity=1.134 Sum_probs=166.9
Q ss_pred cCCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCc
Q 009461 280 KNPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDE 359 (534)
Q Consensus 280 ~~~k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE 359 (534)
+.+++..+|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++|||||||++++|.|++++||.+|+||
T Consensus 14 ~~~~~~~~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~f~dE 93 (197)
T 1zkc_A 14 LVPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDE 93 (197)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCC
T ss_pred CCCCCCcEEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC-CCCccceEEEEEEE
Q 009461 360 VNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLEEIKITGVTV 438 (534)
Q Consensus 360 ~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~-~rP~~~I~I~~~~V 438 (534)
+++.+.|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++||+||++|++++++.. ++|..+|+|.+|+|
T Consensus 94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v 173 (197)
T 1zkc_A 94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173 (197)
T ss_dssp CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred cCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999986 99999999999999
Q ss_pred EeCCCCCCChhHHHH
Q 009461 439 FVNPYSEPDEEEEEE 453 (534)
Q Consensus 439 l~dPf~~~~~~~~~~ 453 (534)
+.|||+++.....++
T Consensus 174 ~~dPf~d~~~~~~~~ 188 (197)
T 1zkc_A 174 FVDPYEEADAQIAQE 188 (197)
T ss_dssp EECTTHHHHHHHHHH
T ss_pred EcCCcccHHHHHHHH
Confidence 999999887766553
No 2
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=2.3e-52 Score=404.66 Aligned_cols=176 Identities=50% Similarity=0.901 Sum_probs=150.9
Q ss_pred CCCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeec-----CCCCCCCCCCccC---
Q 009461 281 NPKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGG-----DPTGTGRGGESIW--- 352 (534)
Q Consensus 281 ~~k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgG-----dptg~g~gg~si~--- 352 (534)
+++++++|.|+|+.|+|+|+||++.||+||+||+.||+.|||+|+.||||+++|||||| ||+++|.|+.|+|
T Consensus 2 ~~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~ 81 (201)
T 3bo7_A 2 KLKKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSIS 81 (201)
T ss_dssp ---CCEEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCC
T ss_pred CCCCceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccc
Confidence 45778999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ----CCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 009461 353 ----GKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 428 (534)
Q Consensus 353 ----g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~ 428 (534)
|.+|+||+++.+.|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++||+||++|+.++++.+++|.
T Consensus 82 ~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~ 161 (201)
T 3bo7_A 82 GFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPL 161 (201)
T ss_dssp SSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBS
T ss_pred cccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcC
Confidence 9999999889999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cceEEEEEEEEeCCCCCCChhHHHHHHh
Q 009461 429 EEIKITGVTVFVNPYSEPDEEEEEEKAK 456 (534)
Q Consensus 429 ~~I~I~~~~Vl~dPf~~~~~~~~~~~~~ 456 (534)
.+|+|.+|+|+.|||+++....+++...
T Consensus 162 ~~i~I~~~~v~~dPf~d~~~~~~~~~~~ 189 (201)
T 3bo7_A 162 KPPKVEEIIVFKNPFEDARKEMEDEKRE 189 (201)
T ss_dssp SCCBEEEEEEEECCC-------------
T ss_pred CCeEEEEEEEEcCCccCHHHHHHHHHHH
Confidence 9999999999999999998775554443
No 3
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=6.5e-51 Score=381.87 Aligned_cols=159 Identities=57% Similarity=1.057 Sum_probs=154.5
Q ss_pred EEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccC
Q 009461 287 YVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLH 366 (534)
Q Consensus 287 ~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h 366 (534)
.|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.|++++||.+|++|+.+.++|
T Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h 81 (161)
T 2ok3_A 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_dssp EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCS
T ss_pred EEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccCCccccccCcCcCc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999998788999
Q ss_pred CcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC-CCCccceEEEEEEEEeCCCCC
Q 009461 367 SGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDEN-DRPLEEIKITGVTVFVNPYSE 445 (534)
Q Consensus 367 ~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~-~rP~~~I~I~~~~Vl~dPf~~ 445 (534)
+++|+|||||.||++|+|||||++.+++|||++|+|||+|++||+||++|++++++.. ++|..+|+|.+|+|+.|||++
T Consensus 82 ~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~~Pf~d 161 (161)
T 2ok3_A 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ 161 (161)
T ss_dssp CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECCSCC-
T ss_pred CCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999986 999999999999999999985
No 4
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=1.2e-50 Score=387.94 Aligned_cols=165 Identities=44% Similarity=0.857 Sum_probs=155.2
Q ss_pred CcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCc
Q 009461 283 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNS 362 (534)
Q Consensus 283 k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~ 362 (534)
....+|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.||.++||.+|++|+.+
T Consensus 14 ~~~~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 93 (185)
T 2poe_A 14 LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYP 93 (185)
T ss_dssp -CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSCBCCCCCT
T ss_pred CCceEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccccC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999878
Q ss_pred cccCCcceEEEEeccC----CCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEE
Q 009461 363 KLLHSGRGVVSMANSG----PHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTV 438 (534)
Q Consensus 363 ~l~h~~rG~lsman~g----~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~V 438 (534)
.|+|+++|+|||||.| |++|+|||||++.++||||++|+|||+|++||+||++|++++++.+++|.++|+|.+|+|
T Consensus 94 ~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i 173 (185)
T 2poe_A 94 ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVI 173 (185)
T ss_dssp TSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEE
T ss_pred CCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEE
Confidence 9999999999999999 999999999999999999999999999999999999999999998899999999999999
Q ss_pred EeCCCCCCC
Q 009461 439 FVNPYSEPD 447 (534)
Q Consensus 439 l~dPf~~~~ 447 (534)
+.|||++++
T Consensus 174 ~~dPf~d~~ 182 (185)
T 2poe_A 174 HSNPIADQE 182 (185)
T ss_dssp ECCC-----
T ss_pred ECCCCCCcc
Confidence 999999875
No 5
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=2.3e-49 Score=381.79 Aligned_cols=159 Identities=45% Similarity=0.854 Sum_probs=151.7
Q ss_pred cceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCcc
Q 009461 284 KKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 363 (534)
Q Consensus 284 ~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 363 (534)
...+|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.|+++|||.+|++|+++.
T Consensus 37 ~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 116 (196)
T 2b71_A 37 ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKE 116 (196)
T ss_dssp HSCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTT
T ss_pred CCcEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred ccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEeCC
Q 009461 364 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVNP 442 (534)
Q Consensus 364 l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dP 442 (534)
++|+++|+|||||.|||+|||||||++.+++|||++|+|||+|++||+||++|++++++.+++|..+|+|.+|+|+.||
T Consensus 117 l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~dP 195 (196)
T 2b71_A 117 LKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAVNA 195 (196)
T ss_dssp CCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC----
T ss_pred cCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999999999998
No 6
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=7.7e-49 Score=369.48 Aligned_cols=155 Identities=46% Similarity=0.837 Sum_probs=151.3
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccc
Q 009461 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 364 (534)
Q Consensus 285 k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 364 (534)
..+|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.|++|+||.+|+||+.+.+
T Consensus 11 ~~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 90 (166)
T 2x7k_A 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDL 90 (166)
T ss_dssp CSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTS
T ss_pred CCEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987899
Q ss_pred cCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 365 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 365 ~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
+|.++|+|||||.|||+|+|||||++.+++|||++|+|||+|++||+||++|+.++++..++|..+|+|.+|.|+
T Consensus 91 ~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~ 165 (166)
T 2x7k_A 91 KFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165 (166)
T ss_dssp CCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred CCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999988999999999999986
No 7
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=7.7e-49 Score=367.43 Aligned_cols=155 Identities=46% Similarity=0.766 Sum_probs=150.6
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccc
Q 009461 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 364 (534)
Q Consensus 285 k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 364 (534)
...|.|+|+.|+|+||||++.||+||+||+.||+.|||+|+.||||+++||||||||+++|.|+++|||.+|+||+.+.+
T Consensus 5 ~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 84 (160)
T 2fu0_A 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHL 84 (160)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTB
T ss_pred CCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCCccccccCCc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999987789
Q ss_pred cCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 365 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 365 ~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
+|+++|+|||||.||++++|||||++.++||||++|+|||+|++||+||++|++++++.+++|..+|+|.+|.|+
T Consensus 85 ~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~ 159 (160)
T 2fu0_A 85 NHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKIN 159 (160)
T ss_dssp CSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC
T ss_pred ccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999988999999999999985
No 8
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=2.1e-48 Score=372.26 Aligned_cols=163 Identities=49% Similarity=0.899 Sum_probs=155.0
Q ss_pred CCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccC
Q 009461 282 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVN 361 (534)
Q Consensus 282 ~k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~ 361 (534)
+.....|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.|++++||.+|++|+.
T Consensus 21 ~~~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 100 (185)
T 2hq6_A 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFH 100 (185)
T ss_dssp CCCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCB
T ss_pred CCCCCEEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCccccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHH--HHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 362 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTL--AAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 362 ~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL--~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
..++|+++|+|||||.|+|+|+|||||++.+++|||++|+|||+|+ ||+++ ++|+.++++.+++|..+|+|.+|+|+
T Consensus 101 ~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~ 179 (185)
T 2hq6_A 101 SRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179 (185)
T ss_dssp TTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEE
T ss_pred cCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEe
Confidence 7899999999999999999999999999999999999999999999 88874 68999999989999999999999999
Q ss_pred eCCCCC
Q 009461 440 VNPYSE 445 (534)
Q Consensus 440 ~dPf~~ 445 (534)
.|||++
T Consensus 180 ~~Pf~d 185 (185)
T 2hq6_A 180 FNPFDD 185 (185)
T ss_dssp ECTTC-
T ss_pred CCCCCC
Confidence 999985
No 9
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=9.5e-49 Score=386.44 Aligned_cols=167 Identities=44% Similarity=0.749 Sum_probs=157.3
Q ss_pred CCcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccC--CCCCCCc
Q 009461 282 PKKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIW--GKPFKDE 359 (534)
Q Consensus 282 ~k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~--g~~f~dE 359 (534)
+....+|.|+|++|+|+|+||++.||+||+||+.||+.|||+|+.|||||++|||||||++++|.||.+|| |.+|+||
T Consensus 18 p~~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f~dE 97 (232)
T 3bkp_A 18 GSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVE 97 (232)
T ss_dssp CSCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCBCCC
T ss_pred CCCCCEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCccCCc
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCccccCCcceEEEEeccCC--------------CCCCccEEEeccCCCCCCCCCcEEEEEEcChHH--HHHHhcCCCCC
Q 009461 360 VNSKLLHSGRGVVSMANSGP--------------HTNGSQFFILYKSATHLNYKHTVFGGVVGGLTT--LAAMEKVPVDE 423 (534)
Q Consensus 360 ~~~~l~h~~rG~lsman~g~--------------ntngSQFFItl~~~p~LD~k~tVFGrVveGmdv--L~~Ie~~~td~ 423 (534)
+.+.|+|+.+|+|||||.|+ ++|+||||||+.+++|||++|+|||+|+ ||+| |++|+.++++.
T Consensus 98 ~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~ 176 (232)
T 3bkp_A 98 THPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGK 176 (232)
T ss_dssp CCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCG
T ss_pred cccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCC
Confidence 87889999999999999997 6999999999999999999999999999 7765 88999999998
Q ss_pred CCCCccceEEEEEEEEeCCCCCCChh
Q 009461 424 NDRPLEEIKITGVTVFVNPYSEPDEE 449 (534)
Q Consensus 424 ~~rP~~~I~I~~~~Vl~dPf~~~~~~ 449 (534)
+++|..+|+|.+|+|+.|||+++...
T Consensus 177 ~~~P~~~i~I~~~~vl~dPf~d~~~~ 202 (232)
T 3bkp_A 177 EDRPMTPPFIKSVDVLWNPFEDLVPR 202 (232)
T ss_dssp GGCBSSCCBEEEEEEEECCCTTCCCS
T ss_pred CCCcCCCeEEEEEEEEcCChhhhhhc
Confidence 99999999999999999999988754
No 10
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=2.9e-48 Score=368.68 Aligned_cols=156 Identities=46% Similarity=0.783 Sum_probs=150.4
Q ss_pred CcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCc
Q 009461 283 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNS 362 (534)
Q Consensus 283 k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~ 362 (534)
.....|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.|+.||||.+|+||+..
T Consensus 19 ~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 98 (176)
T 2a2n_A 19 RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHS 98 (176)
T ss_dssp CCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCT
T ss_pred CCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCCCCCcccCCcccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCC-CCCCCccceEEEEEEE
Q 009461 363 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVD-ENDRPLEEIKITGVTV 438 (534)
Q Consensus 363 ~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td-~~~rP~~~I~I~~~~V 438 (534)
.++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++||+||++|++++++ .+++|..+|+|.+|.|
T Consensus 99 ~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v 175 (176)
T 2a2n_A 99 TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 175 (176)
T ss_dssp TCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred ccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999998 5899999999999986
No 11
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=6.7e-48 Score=373.10 Aligned_cols=160 Identities=46% Similarity=0.798 Sum_probs=154.8
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccc
Q 009461 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 364 (534)
Q Consensus 285 k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 364 (534)
..+|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++++|.++++|||.+|++|+.+.|
T Consensus 11 ~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~f~dE~~~~l 90 (203)
T 2k7n_A 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDL 90 (203)
T ss_dssp CSEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSCBCCCCCCSS
T ss_pred CCEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987899
Q ss_pred cCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEeCCCC
Q 009461 365 LHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVNPYS 444 (534)
Q Consensus 365 ~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dPf~ 444 (534)
+|.++|+|||||.+||+|+|||||++.+++|||++|+|||+|++||+||++|++++++..++|..+|+|.+|+|+..++.
T Consensus 91 ~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~~~s 170 (203)
T 2k7n_A 91 KFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGS 170 (203)
T ss_dssp CCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCCCCC
T ss_pred cCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999977663
No 12
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=9.9e-48 Score=368.50 Aligned_cols=162 Identities=41% Similarity=0.738 Sum_probs=153.2
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCcEEEEeecCcEEeecC-CCCCCCCCCccCCCCCC
Q 009461 285 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFK 357 (534)
Q Consensus 285 k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~-Y~gt~FhRvi~~f~IQgGd-ptg~g~gg~si~g~~f~ 357 (534)
+.|+.|. |+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++||||||| +.++|+|+.||||.+|+
T Consensus 17 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~ 96 (188)
T 3ich_A 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFP 96 (188)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBC
T ss_pred eEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCccc
Confidence 4455554 899999999999999999999999995 789 9999999999999999999 56899999999999999
Q ss_pred CccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEE
Q 009461 358 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVT 437 (534)
Q Consensus 358 dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~ 437 (534)
|| +..++|+++|+|||||.|||+|+||||||+.+++|||++|+|||+|++||+||++|++++++..++|..+|+|.+|+
T Consensus 97 dE-~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~ 175 (188)
T 3ich_A 97 DE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCG 175 (188)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEE
T ss_pred cc-ccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeE
Confidence 99 78899999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred EE--eCCCCCCC
Q 009461 438 VF--VNPYSEPD 447 (534)
Q Consensus 438 Vl--~dPf~~~~ 447 (534)
++ .|||+++.
T Consensus 176 ~l~~~~Pf~~~~ 187 (188)
T 3ich_A 176 KIEVEKPFAIAK 187 (188)
T ss_dssp EEEEEEEEECCC
T ss_pred EEecCCCCCCCC
Confidence 98 89998875
No 13
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=1.5e-46 Score=361.00 Aligned_cols=154 Identities=44% Similarity=0.757 Sum_probs=147.0
Q ss_pred CcceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHH---------------hccccCCcEEEEeecCcEEeecCCCCCCCC
Q 009461 283 KKKGYVQLHTTHGDLNIELHCDITPRSCENFITLC---------------ERGYYNGVAFHRSIRNFMIQGGDPTGTGRG 347 (534)
Q Consensus 283 k~k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~---------------~~g~Y~gt~FhRvi~~f~IQgGdptg~g~g 347 (534)
....+|.|+|+.|+|+||||++.||+||+||+.|| +.+||+|+.|||||++|||||||++++|+|
T Consensus 21 ~~~~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~g 100 (191)
T 1w74_A 21 LATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRG 100 (191)
T ss_dssp CCSEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSSC
T ss_pred CCCeEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCCC
Confidence 34578999999999999999999999999999999 458999999999999999999999988888
Q ss_pred CCccCCCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEc--ChHHHHHHhcCCCCCCC
Q 009461 348 GESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG--GLTTLAAMEKVPVDEND 425 (534)
Q Consensus 348 g~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVve--GmdvL~~Ie~~~td~~~ 425 (534)
+ ||.+|+||+++.++|+++|+|||||.|||+|+||||||+.++||||++|+|||+|++ ||+||++|++++++.++
T Consensus 101 g---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~ 177 (191)
T 1w74_A 101 G---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGND 177 (191)
T ss_dssp C---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTS
T ss_pred C---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCC
Confidence 7 699999998889999999999999999999999999999999999999999999999 99999999999999889
Q ss_pred CCccceEEEEEEEE
Q 009461 426 RPLEEIKITGVTVF 439 (534)
Q Consensus 426 rP~~~I~I~~~~Vl 439 (534)
+|..+|+|.+|+|+
T Consensus 178 ~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 178 RPTDPVVIESITIS 191 (191)
T ss_dssp CBSSCCEEEEEEEC
T ss_pred CcCCCeEEEEEEEC
Confidence 99999999999984
No 14
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=3e-46 Score=355.22 Aligned_cols=155 Identities=47% Similarity=0.802 Sum_probs=146.0
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc--------c---ccCCcEEEEeecCcEEeecCCC-CCCCCCC
Q 009461 285 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--------G---YYNGVAFHRSIRNFMIQGGDPT-GTGRGGE 349 (534)
Q Consensus 285 k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~~--------g---~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~ 349 (534)
..|..+. |+.|+|+||||++.||+||+||++||++ | ||+|+.||||+++|||||||++ ++|+|++
T Consensus 8 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~ 87 (177)
T 1a58_A 8 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGE 87 (177)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCC
T ss_pred EEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCC
Confidence 4455554 7899999999999999999999999984 4 9999999999999999999997 8899999
Q ss_pred ccCCCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCcc
Q 009461 350 SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLE 429 (534)
Q Consensus 350 si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~ 429 (534)
||||.+|+|| +..++|+++|+|||||.|||+|+||||||+.++||||++|+|||+|++|||||++|++++++.+++|..
T Consensus 88 si~g~~f~dE-~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~ 166 (177)
T 1a58_A 88 SIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLA 166 (177)
T ss_dssp CTTSSCBCCC-CCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred cccCCcccCc-ccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCC
Confidence 9999999999 568999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred ceEEEEEEEEe
Q 009461 430 EIKITGVTVFV 440 (534)
Q Consensus 430 ~I~I~~~~Vl~ 440 (534)
+|+|.+|++|.
T Consensus 167 ~v~I~~~G~l~ 177 (177)
T 1a58_A 167 DVVILNCGELV 177 (177)
T ss_dssp CEEEEEEEEEC
T ss_pred CeEEEEeEEEC
Confidence 99999999984
No 15
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=3.2e-46 Score=355.60 Aligned_cols=155 Identities=39% Similarity=0.723 Sum_probs=146.4
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh-----------ccccCCcEEEEeecCcEEeecCCC-CCCCCC
Q 009461 284 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE-----------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGG 348 (534)
Q Consensus 284 ~k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~-----------~g~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg 348 (534)
+..|..+. |+.|+|+||||++.||+||+||++||+ .+||+|+.||||+++|||||||++ ++|+|+
T Consensus 10 ~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg 89 (179)
T 2wfi_A 10 PRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89 (179)
T ss_dssp CEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred CeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCC
Confidence 45555554 899999999999999999999999996 579999999999999999999997 889999
Q ss_pred CccCCCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 009461 349 ESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 428 (534)
Q Consensus 349 ~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~ 428 (534)
+||||.+|+|| +..++|+++|+|||||.|||+|+||||||+.++||||++|+|||+|++|||||++|++++++..++|.
T Consensus 90 ~si~g~~f~dE-~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~ 168 (179)
T 2wfi_A 90 ESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPF 168 (179)
T ss_dssp CCTTSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBS
T ss_pred CcccCCccccc-ccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCC
Confidence 99999999999 57899999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cceEEEEEEEE
Q 009461 429 EEIKITGVTVF 439 (534)
Q Consensus 429 ~~I~I~~~~Vl 439 (534)
.+|+|.+|++|
T Consensus 169 ~~v~I~~~G~l 179 (179)
T 2wfi_A 169 AEVRILSCGEL 179 (179)
T ss_dssp SCEEEEEEEEC
T ss_pred CCeEEEeCeeC
Confidence 99999999985
No 16
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=2.4e-46 Score=355.86 Aligned_cols=147 Identities=45% Similarity=0.794 Sum_probs=142.7
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhccc--------cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCccCc
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCERGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNS 362 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~--------Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~ 362 (534)
|+.|+|+||||++.||+||+||++||+.+| |+|+.||||+++|||||||++ ++|+|++||||.+|+|| +.
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE-~~ 100 (177)
T 1mzw_A 22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADE-NF 100 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCC-CC
T ss_pred eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCcccCc-cc
Confidence 689999999999999999999999999998 999999999999999999996 88999999999999999 57
Q ss_pred cccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 363 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 363 ~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
.++|+++|+|||||.|||+|+|||||++.++||||++|+|||+|++||+||++|++++++.+++|..+|+|.+|++|
T Consensus 101 ~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~cG~l 177 (177)
T 1mzw_A 101 KLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177 (177)
T ss_dssp CSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred ccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEeceeC
Confidence 89999999999999999999999999999999999999999999999999999999999989999999999999985
No 17
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=355.37 Aligned_cols=156 Identities=43% Similarity=0.774 Sum_probs=147.0
Q ss_pred cceEEEE---EEeCeeEEEEeCCCCChhhHHHHHHHHh-----------ccccCCcEEEEeecCcEEeecCCC-CCCCCC
Q 009461 284 KKGYVQL---HTTHGDLNIELHCDITPRSCENFITLCE-----------RGYYNGVAFHRSIRNFMIQGGDPT-GTGRGG 348 (534)
Q Consensus 284 ~k~~V~l---~T~~G~I~IeL~~d~aP~tv~NF~~L~~-----------~g~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg 348 (534)
+..|..+ .|+.|+|+||||++.||+||+||++||+ .+||+|+.|||||++|||||||++ ++|+|+
T Consensus 20 ~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg 99 (192)
T 2he9_A 20 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGG 99 (192)
T ss_dssp CEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred CeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCC
Confidence 3455555 3899999999999999999999999995 579999999999999999999997 889999
Q ss_pred CccCCCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc
Q 009461 349 ESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL 428 (534)
Q Consensus 349 ~si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~ 428 (534)
+||||.+|+|| +..++|+++|+|||||.|||+|+||||||+.++||||++|+|||+|++|||||++|++++++..++|.
T Consensus 100 ~siyg~~f~dE-~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~ 178 (192)
T 2he9_A 100 ESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPY 178 (192)
T ss_dssp CCTTSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred CcccCCcccCc-cccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCc
Confidence 99999999999 57899999999999999999999999999999999999999999999999999999999999899999
Q ss_pred cceEEEEEEEEe
Q 009461 429 EEIKITGVTVFV 440 (534)
Q Consensus 429 ~~I~I~~~~Vl~ 440 (534)
.+|+|.+|++|.
T Consensus 179 ~~v~I~~~g~l~ 190 (192)
T 2he9_A 179 ADVRVIDCGVLA 190 (192)
T ss_dssp SCEEEEEEEECC
T ss_pred CCeEEEEeEEEc
Confidence 999999999985
No 18
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=1.4e-45 Score=349.04 Aligned_cols=154 Identities=45% Similarity=0.780 Sum_probs=144.0
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCC
Q 009461 285 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFK 357 (534)
Q Consensus 285 k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~-Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~ 357 (534)
..|+.+. |+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||++ ++|+|+.|+||.+|+
T Consensus 12 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~ 91 (172)
T 2cmt_A 12 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFD 91 (172)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBC
T ss_pred EEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCccc
Confidence 4444443 899999999999999999999999997 488 999999999999999999997 789999999999999
Q ss_pred CccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEE
Q 009461 358 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVT 437 (534)
Q Consensus 358 dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~ 437 (534)
|| +..++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++||+||++|++++++ +++|..+|+|.+|+
T Consensus 92 dE-~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~~g 169 (172)
T 2cmt_A 92 DE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVIISRCG 169 (172)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEEEEEE
T ss_pred cc-ccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEEEEeE
Confidence 99 57899999999999999999999999999999999999999999999999999999999985 68999999999999
Q ss_pred EEe
Q 009461 438 VFV 440 (534)
Q Consensus 438 Vl~ 440 (534)
+|.
T Consensus 170 ~l~ 172 (172)
T 2cmt_A 170 ELI 172 (172)
T ss_dssp EEC
T ss_pred eEC
Confidence 973
No 19
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=8.3e-46 Score=350.51 Aligned_cols=154 Identities=43% Similarity=0.742 Sum_probs=145.1
Q ss_pred cceEEEE---EEeCeeEEEEeCCCCChhhHHHHHHHH--hccc-cCCcEEEEeecCcEEeecC-CCCCCCCCCccCCCCC
Q 009461 284 KKGYVQL---HTTHGDLNIELHCDITPRSCENFITLC--ERGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPF 356 (534)
Q Consensus 284 ~k~~V~l---~T~~G~I~IeL~~d~aP~tv~NF~~L~--~~g~-Y~gt~FhRvi~~f~IQgGd-ptg~g~gg~si~g~~f 356 (534)
+..|..+ .|+.|+|+||||++.||+||+||++|| +.|| |+|+.||||+++||||||| +.++|+|++||||.+|
T Consensus 12 ~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f 91 (172)
T 2haq_A 12 AKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKF 91 (172)
T ss_dssp EEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCB
T ss_pred CeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcc
Confidence 3444444 389999999999999999999999999 7899 9999999999999999999 5688999999999999
Q ss_pred CCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEE
Q 009461 357 KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGV 436 (534)
Q Consensus 357 ~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~ 436 (534)
+|| ++.++|. +|+|||||.||++|+|||||++.+++|||++|+|||+|++||+||++|++++++..++|..+|+|.+|
T Consensus 92 ~dE-~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~ 169 (172)
T 2haq_A 92 ADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVAS 169 (172)
T ss_dssp CCC-CCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEE
T ss_pred cCc-CCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEe
Confidence 999 7889999 99999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred EEE
Q 009461 437 TVF 439 (534)
Q Consensus 437 ~Vl 439 (534)
++|
T Consensus 170 g~l 172 (172)
T 2haq_A 170 GEL 172 (172)
T ss_dssp EEC
T ss_pred EEC
Confidence 985
No 20
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=1.9e-45 Score=348.58 Aligned_cols=154 Identities=43% Similarity=0.775 Sum_probs=144.2
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCC
Q 009461 285 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFK 357 (534)
Q Consensus 285 k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~-Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~ 357 (534)
..|+.+. |+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||++ ++|+|+.+|||..|+
T Consensus 13 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~ 92 (173)
T 2r99_A 13 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFD 92 (173)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBC
T ss_pred EEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCccc
Confidence 4455554 899999999999999999999999994 788 999999999999999999998 789999999999999
Q ss_pred CccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEE
Q 009461 358 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVT 437 (534)
Q Consensus 358 dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~ 437 (534)
|| +..++|+++|+|||||.|||+|+|||||++.+++|||++|+|||+|++||+||++|++++++ +++|..+|+|.+|+
T Consensus 93 dE-~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~cG 170 (173)
T 2r99_A 93 DE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIADCG 170 (173)
T ss_dssp CC-CCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEE
T ss_pred Cc-ccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEEEee
Confidence 99 67899999999999999999999999999999999999999999999999999999999886 68999999999999
Q ss_pred EEe
Q 009461 438 VFV 440 (534)
Q Consensus 438 Vl~ 440 (534)
+|.
T Consensus 171 ~l~ 173 (173)
T 2r99_A 171 EYV 173 (173)
T ss_dssp ECC
T ss_pred eEC
Confidence 873
No 21
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=1.8e-45 Score=348.66 Aligned_cols=147 Identities=46% Similarity=0.769 Sum_probs=140.5
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhc--c--------ccCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCcc
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCER--G--------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEV 360 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~~--g--------~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~ 360 (534)
|+.|+|+||||++.||+||+||++||+. | ||+|+.||||+++|||||||++ ++|+|+.||||.+|+||
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg~~f~dE- 93 (173)
T 2igv_A 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDE- 93 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCCCcccCc-
Confidence 5699999999999999999999999986 6 7999999999999999999997 78999999999999999
Q ss_pred CccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEe
Q 009461 361 NSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 440 (534)
Q Consensus 361 ~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 440 (534)
+..++|+++|+|||||.|||+|+||||||+.++||||++|+|||+|++||+||++|+.++++ +++|..+|+|.+|++|.
T Consensus 94 ~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~~~v~I~~~g~l~ 172 (173)
T 2igv_A 94 NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCGQLK 172 (173)
T ss_dssp CCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEEEEEC
T ss_pred ccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCCCEEEEEeEEEc
Confidence 57899999999999999999999999999999999999999999999999999999999984 68999999999999984
No 22
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=2.6e-45 Score=345.11 Aligned_cols=153 Identities=43% Similarity=0.746 Sum_probs=144.1
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCC
Q 009461 285 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFK 357 (534)
Q Consensus 285 k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~-Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~ 357 (534)
..|..+. |+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||++ ++|+|+.|+||.+|+
T Consensus 5 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~ 84 (165)
T 2z6w_A 5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFP 84 (165)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBC
T ss_pred EEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCccc
Confidence 3444443 689999999999999999999999999 999 999999999999999999996 789999999999999
Q ss_pred CccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEE
Q 009461 358 DEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVT 437 (534)
Q Consensus 358 dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~ 437 (534)
|| ++.++|.++|+|||||.||++|+|||||++.+++|||++|+|||+|++||+||++|+++++ .+++|..+|+|.+|+
T Consensus 85 dE-~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g 162 (165)
T 2z6w_A 85 DE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCG 162 (165)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEE
T ss_pred Cc-ccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEeE
Confidence 99 6889999999999999999999999999999999999999999999999999999999985 588999999999999
Q ss_pred EE
Q 009461 438 VF 439 (534)
Q Consensus 438 Vl 439 (534)
+|
T Consensus 163 ~l 164 (165)
T 2z6w_A 163 QL 164 (165)
T ss_dssp EC
T ss_pred EE
Confidence 87
No 23
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=1.5e-45 Score=348.34 Aligned_cols=146 Identities=45% Similarity=0.757 Sum_probs=140.1
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHh-ccc--------cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCccC
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCE-RGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVN 361 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~-~g~--------Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~ 361 (534)
|+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||++ ++|+|+.||||.+|+|| +
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~ 93 (170)
T 1qng_A 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDE-N 93 (170)
T ss_dssp SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-C
T ss_pred EeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCccccCCccccc-c
Confidence 459999999999999999999999998 489 999999999999999999996 88999999999999999 6
Q ss_pred ccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEE
Q 009461 362 SKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVF 439 (534)
Q Consensus 362 ~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl 439 (534)
..++|+++|+|||||.|||+|+||||||+.++||||++|+|||+|++|||||++|+++++ .+++|..+|+|.+|++|
T Consensus 94 ~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~v~I~~cG~l 170 (170)
T 1qng_A 94 FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170 (170)
T ss_dssp CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSCEEEEEEEEC
T ss_pred cccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCCCCeEEEeceeC
Confidence 789999999999999999999999999999999999999999999999999999999999 68999999999999985
No 24
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=3e-45 Score=344.43 Aligned_cols=147 Identities=39% Similarity=0.664 Sum_probs=141.8
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCcEEEEeecCcEEeecC-CCCCCCCCCccCCCCCCCccCccccCC
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFKDEVNSKLLHS 367 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~-Y~gt~FhRvi~~f~IQgGd-ptg~g~gg~si~g~~f~dE~~~~l~h~ 367 (534)
|+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++||||||| +.++|.|+.++||.+|++| ++.++|+
T Consensus 14 t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE-~~~l~h~ 92 (164)
T 3pmp_A 14 KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADE-NFQVKHT 92 (164)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCcccccc-ccccCcC
Confidence 899999999999999999999999999 889 9999999999999999999 5689999999999999999 7889999
Q ss_pred cceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEe
Q 009461 368 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 440 (534)
Q Consensus 368 ~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 440 (534)
++|+|||||.||++|+|||||++.++||||++|+|||+|++||+||++|++++++ +++|..+|+|.+|++|+
T Consensus 93 ~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~cg~l~ 164 (164)
T 3pmp_A 93 KPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGTVA 164 (164)
T ss_dssp STTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEEC-
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeCeEEC
Confidence 9999999999999999999999999999999999999999999999999999986 78999999999999974
No 25
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=1.2e-45 Score=353.46 Aligned_cols=160 Identities=43% Similarity=0.728 Sum_probs=149.3
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc--c-ccCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCC
Q 009461 284 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER--G-YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPF 356 (534)
Q Consensus 284 ~k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~~--g-~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f 356 (534)
++.|+.+. |+.|+|+||||++.||+||+||++||++ | ||+|+.||||+++|||||||++ ++|.|+.++||..|
T Consensus 13 ~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f 92 (185)
T 4fru_A 13 VKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 92 (185)
T ss_dssp EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred cEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCcc
Confidence 34455555 6799999999999999999999999975 6 7999999999999999999987 88999999999999
Q ss_pred CCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEE
Q 009461 357 KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGV 436 (534)
Q Consensus 357 ~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~ 436 (534)
++| +..++|+++|+|||||.|+++|+|||||++.+++|||++|+|||+|++||+||++|++++++.+++|..+|+|.+|
T Consensus 93 ~de-~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~ 171 (185)
T 4fru_A 93 PDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADC 171 (185)
T ss_dssp CCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEE
T ss_pred Ccc-ccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEc
Confidence 999 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEE--eCCCC
Q 009461 437 TVF--VNPYS 444 (534)
Q Consensus 437 ~Vl--~dPf~ 444 (534)
+++ .+||+
T Consensus 172 g~l~~~~Pf~ 181 (185)
T 4fru_A 172 GKIEVEKPFA 181 (185)
T ss_dssp EEEEEEEEEE
T ss_pred eEEecCCCCc
Confidence 987 57875
No 26
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=9.5e-45 Score=347.22 Aligned_cols=152 Identities=45% Similarity=0.752 Sum_probs=141.2
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc--------cCCcEEEEeecCcEEeecCCC-CCCCCCCc
Q 009461 285 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY--------YNGVAFHRSIRNFMIQGGDPT-GTGRGGES 350 (534)
Q Consensus 285 k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~--------Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~s 350 (534)
..|+.+. |+.|+|+||||++.||+||+||+.||+ .|| |+|+.||||+++|||||||++ ++|+|+.|
T Consensus 21 ~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~s 100 (186)
T 2poy_A 21 VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGES 100 (186)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCC
T ss_pred EEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCc
Confidence 4455554 679999999999999999999999996 688 999999999999999999987 88999999
Q ss_pred cCCCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccc
Q 009461 351 IWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEE 430 (534)
Q Consensus 351 i~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~ 430 (534)
|||.+|+|| +..++|+++|+|||||.|||+|+||||||+.++||||++|+|||+|++|||||++|+++++ .+++|..+
T Consensus 101 i~g~~f~dE-~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~P~~~ 178 (186)
T 2poy_A 101 IYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKS 178 (186)
T ss_dssp TTC-CBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSC
T ss_pred cCCCcccCc-ccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCC
Confidence 999999999 5789999999999999999999999999999999999999999999999999999999998 57899999
Q ss_pred eEEEEEEE
Q 009461 431 IKITGVTV 438 (534)
Q Consensus 431 I~I~~~~V 438 (534)
|+|.+|++
T Consensus 179 v~I~~cG~ 186 (186)
T 2poy_A 179 VCITASGV 186 (186)
T ss_dssp EEEEEEEC
T ss_pred EEEEeCCC
Confidence 99999984
No 27
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=1.2e-45 Score=349.61 Aligned_cols=149 Identities=40% Similarity=0.666 Sum_probs=114.1
Q ss_pred EEEeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCcEEEEeecCcEEeecC-CCCCCCCCCccCCCCCCCccCcccc
Q 009461 290 LHTTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGD-PTGTGRGGESIWGKPFKDEVNSKLL 365 (534)
Q Consensus 290 l~T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~-Y~gt~FhRvi~~f~IQgGd-ptg~g~gg~si~g~~f~dE~~~~l~ 365 (534)
+.|++|+|+||||++.||+||+||++||+ .|| |+|+.||||+++||||||| +.++|+|++||||.+|+|| ++.++
T Consensus 17 ~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~~~ 95 (172)
T 2c3b_A 17 AETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADE-NFSRK 95 (172)
T ss_dssp SCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------CHH
T ss_pred eecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCc-ccccc
Confidence 35889999999999999999999999998 788 9999999999999999999 7799999999999999999 78899
Q ss_pred CCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEc--ChHHHHHHhcCCCCCCC-CCccceEEEEEEEE
Q 009461 366 HSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVG--GLTTLAAMEKVPVDEND-RPLEEIKITGVTVF 439 (534)
Q Consensus 366 h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVve--GmdvL~~Ie~~~td~~~-rP~~~I~I~~~~Vl 439 (534)
|+++|+|||||.|||+|+|||||++.++||||++|+|||+|++ ||+||++|++++++..+ +|..+|+|.+|++|
T Consensus 96 h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 96 HDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp HHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred cCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence 9999999999999999999999999999999999999999999 99999999999998755 99999999999985
No 28
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=9.9e-45 Score=341.74 Aligned_cols=152 Identities=33% Similarity=0.541 Sum_probs=141.4
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccc
Q 009461 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 364 (534)
Q Consensus 285 k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 364 (534)
.-.|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+++.+ +.++|+.+|++|+...+
T Consensus 3 ~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~--~~~~~~~~~~~E~~~~l 80 (167)
T 3s6m_A 3 GSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGL--KQKPTDAPIANEANNGL 80 (167)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTT--EECCCCCCBCCCGGGCC
T ss_pred CcEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCC--CCCCCCCccCCcccccc
Confidence 3479999999999999999999999999999999999999999999999999999998543 34678999999987777
Q ss_pred cCCcceEEEEec-cCCCCCCccEEEeccCCCCCCCC--------CcEEEEEEcChHHHHHHhcCCCCC----CCCCccce
Q 009461 365 LHSGRGVVSMAN-SGPHTNGSQFFILYKSATHLNYK--------HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEI 431 (534)
Q Consensus 365 ~h~~rG~lsman-~g~ntngSQFFItl~~~p~LD~k--------~tVFGrVveGmdvL~~Ie~~~td~----~~rP~~~I 431 (534)
.| .+|+||||| .+||+|+|||||++.+++|||++ |+|||+|++||+||++|++++++. +++|+++|
T Consensus 81 ~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v 159 (167)
T 3s6m_A 81 KN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDV 159 (167)
T ss_dssp CC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCC
T ss_pred cC-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCe
Confidence 76 799999999 68999999999999999999998 999999999999999999999987 68999999
Q ss_pred EEEEEEEE
Q 009461 432 KITGVTVF 439 (534)
Q Consensus 432 ~I~~~~Vl 439 (534)
+|.+|+|+
T Consensus 160 ~I~~~~il 167 (167)
T 3s6m_A 160 VIEKAVVV 167 (167)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 99999985
No 29
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=5.3e-45 Score=342.72 Aligned_cols=149 Identities=37% Similarity=0.629 Sum_probs=139.1
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccccCC
Q 009461 288 VQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKLLHS 367 (534)
Q Consensus 288 V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l~h~ 367 (534)
|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||++.. .+.++||.+|+||+...+.|
T Consensus 2 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--~g~~~~g~~~~dE~~~~l~~- 78 (164)
T 1lop_A 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--MKQKATKEPIKNEANNGLKN- 78 (164)
T ss_dssp EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT--TEECCCCCCBCCCCCSSCCC-
T ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC--CCcCCCCCcccccccccccc-
Confidence 789999999999999999999999999999999999999999999999999999732 25788999999997667777
Q ss_pred cceEEEEec-cCCCCCCccEEEeccCCCCCCCC--------CcEEEEEEcChHHHHHHhcCCCCC----CCCCccceEEE
Q 009461 368 GRGVVSMAN-SGPHTNGSQFFILYKSATHLNYK--------HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIKIT 434 (534)
Q Consensus 368 ~rG~lsman-~g~ntngSQFFItl~~~p~LD~k--------~tVFGrVveGmdvL~~Ie~~~td~----~~rP~~~I~I~ 434 (534)
.+|+||||| .+||+|+|||||++.+++|||++ |+|||+|++||+||++|++++++. +++|..+|+|.
T Consensus 79 ~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~ 158 (164)
T 1lop_A 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_dssp CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEE
Confidence 599999997 48999999999999999999998 999999999999999999999975 58999999999
Q ss_pred EEEEE
Q 009461 435 GVTVF 439 (534)
Q Consensus 435 ~~~Vl 439 (534)
+|+|+
T Consensus 159 ~~~v~ 163 (164)
T 1lop_A 159 SVTVS 163 (164)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99986
No 30
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=5.3e-45 Score=360.29 Aligned_cols=158 Identities=25% Similarity=0.428 Sum_probs=142.4
Q ss_pred ceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHhc-----------------c--c-cCCcEEEEeecCcEEeecC-
Q 009461 285 KGYVQLH---TTHGDLNIELHCDITPRSCENFITLCER-----------------G--Y-YNGVAFHRSIRNFMIQGGD- 340 (534)
Q Consensus 285 k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~~-----------------g--~-Y~gt~FhRvi~~f~IQgGd- 340 (534)
..|+.|. |+.|+|+||||++.||+||+||++||++ | | |+|+.|||||++|||||||
T Consensus 16 ~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~ 95 (234)
T 2ose_A 16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDI 95 (234)
T ss_dssp EEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCC
T ss_pred EEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCc
Confidence 3444444 9999999999999999999999999984 5 8 9999999999999999999
Q ss_pred CCCCCCCCCccCCCC-----CCCccCccccCCcceEEEEec----cCCCCCCccEEEeccC------CCCCCCCCcEEEE
Q 009461 341 PTGTGRGGESIWGKP-----FKDEVNSKLLHSGRGVVSMAN----SGPHTNGSQFFILYKS------ATHLNYKHTVFGG 405 (534)
Q Consensus 341 ptg~g~gg~si~g~~-----f~dE~~~~l~h~~rG~lsman----~g~ntngSQFFItl~~------~p~LD~k~tVFGr 405 (534)
+.++|+||+||||.. |+ + +.|+|+++|+||||| .||++||||||||+.+ ++|||++|+|||+
T Consensus 96 ~~g~G~Gg~siyg~~~~p~~f~-~--~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~ 172 (234)
T 2ose_A 96 YNSNGSSAGTVYCDEPIPPVFG-D--YFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQ 172 (234)
T ss_dssp C----CCCCCTTTTCCBCCCCC-S--CCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEE
T ss_pred cCCCCCCCccccCCccCccccc-C--cCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEE
Confidence 569999999999998 66 3 578999999999999 9999999999999999 9999999999999
Q ss_pred EEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEeCCCCC
Q 009461 406 VVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVNPYSE 445 (534)
Q Consensus 406 VveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~dPf~~ 445 (534)
|++|||||++|++++++.+++|..+|+|.+|+++.+||++
T Consensus 173 Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~~~ 212 (234)
T 2ose_A 173 VYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSSQA 212 (234)
T ss_dssp EEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHHHH
T ss_pred EeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCccc
Confidence 9999999999999999988999999999999999999853
No 31
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=1.9e-44 Score=354.71 Aligned_cols=147 Identities=40% Similarity=0.666 Sum_probs=141.5
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhcc--------ccCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCccCc
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCERG--------YYNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNS 362 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~~g--------~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~ 362 (534)
|+.|+|+||||++.||+||+||++||+.+ ||+|+.|||||++|||||||++ ++|+|+++|||.+|+|| +.
T Consensus 71 t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~f~dE-~~ 149 (229)
T 1z81_A 71 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDE-NF 149 (229)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCC-CC
T ss_pred eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCccccc-cc
Confidence 56999999999999999999999999987 7999999999999999999996 88999999999999999 57
Q ss_pred cccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEE--cChHHHHHHhcCCCCCC-CCCccceEEEEEEEE
Q 009461 363 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVV--GGLTTLAAMEKVPVDEN-DRPLEEIKITGVTVF 439 (534)
Q Consensus 363 ~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVv--eGmdvL~~Ie~~~td~~-~rP~~~I~I~~~~Vl 439 (534)
.++|+++|+|||||.|||+|+||||||+.+++|||++|+|||+|+ +||+||++|++++++.. ++|..+|+|.+|++|
T Consensus 150 ~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l 229 (229)
T 1z81_A 150 DIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229 (229)
T ss_dssp CSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred ccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence 899999999999999999999999999999999999999999999 99999999999999986 999999999999985
No 32
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=6.6e-44 Score=340.98 Aligned_cols=147 Identities=44% Similarity=0.704 Sum_probs=139.0
Q ss_pred EeCeeEEEEeCCCCChhhHHHHHHHHhccc---cCCcEEEEeecCcEEeecCCC-CCCCCCCccCCCCCCCccCccccCC
Q 009461 292 TTHGDLNIELHCDITPRSCENFITLCERGY---YNGVAFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEVNSKLLHS 367 (534)
Q Consensus 292 T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~---Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~si~g~~f~dE~~~~l~h~ 367 (534)
|+.|+|+||||++.||+||+||++||+.++ |+|+.||||+++|||||||++ ++|.|+.++||..|++| +..++|+
T Consensus 34 ~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~de-~~~l~h~ 112 (184)
T 3rdd_A 34 EPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFILKHT 112 (184)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCcccCc-ccccccC
Confidence 459999999999999999999999997654 999999999999999999954 88999999999999999 6789999
Q ss_pred cceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEe
Q 009461 368 GRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFV 440 (534)
Q Consensus 368 ~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~ 440 (534)
++|+|||||.||++|+|||||++.++++||++|+|||+|++|||||++|++++++ +++|..+|+|.+|++|.
T Consensus 113 ~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~P~~~v~I~~cG~l~ 184 (184)
T 3rdd_A 113 GPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQLE 184 (184)
T ss_dssp STTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEEEECC
T ss_pred CCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCCCcCCeEEEeCeEEC
Confidence 9999999999999999999999999999999999999999999999999999874 78999999999999973
No 33
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.2e-43 Score=341.39 Aligned_cols=155 Identities=42% Similarity=0.710 Sum_probs=145.9
Q ss_pred cceEEEEE---EeCeeEEEEeCCCCChhhHHHHHHHHh--ccc-cCCcEEEEeecCcEEeecCC-CCCCCCCCccCCCCC
Q 009461 284 KKGYVQLH---TTHGDLNIELHCDITPRSCENFITLCE--RGY-YNGVAFHRSIRNFMIQGGDP-TGTGRGGESIWGKPF 356 (534)
Q Consensus 284 ~k~~V~l~---T~~G~I~IeL~~d~aP~tv~NF~~L~~--~g~-Y~gt~FhRvi~~f~IQgGdp-tg~g~gg~si~g~~f 356 (534)
+..|..+. |+.|+|+||||++.||+||+||++||+ .|| |+|+.||||+++|||||||+ .++|.|+.++||.+|
T Consensus 28 p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f 107 (193)
T 3k2c_A 28 GNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKF 107 (193)
T ss_dssp TCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCB
T ss_pred CEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCcc
Confidence 34566665 899999999999999999999999998 778 99999999999999999994 588999999999999
Q ss_pred CCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCc--cceEEE
Q 009461 357 KDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPL--EEIKIT 434 (534)
Q Consensus 357 ~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~--~~I~I~ 434 (534)
++| ++.++|+++|+|||||.||++|+|||||++.+++|||++|+|||+|++|||||++|++++++ .++|. .+|+|.
T Consensus 108 ~dE-~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~I~ 185 (193)
T 3k2c_A 108 PDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIEIR 185 (193)
T ss_dssp CCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEEEE
T ss_pred ccc-ccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEEEE
Confidence 999 78899999999999999999999999999999999999999999999999999999999997 67999 999999
Q ss_pred EEEEEe
Q 009461 435 GVTVFV 440 (534)
Q Consensus 435 ~~~Vl~ 440 (534)
+|++|.
T Consensus 186 ~cG~l~ 191 (193)
T 3k2c_A 186 DCGVLG 191 (193)
T ss_dssp EEEECC
T ss_pred EceEeC
Confidence 999985
No 34
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=4.3e-44 Score=337.17 Aligned_cols=152 Identities=33% Similarity=0.545 Sum_probs=139.5
Q ss_pred ceEEEEEEeCeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCccc
Q 009461 285 KGYVQLHTTHGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSKL 364 (534)
Q Consensus 285 k~~V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~l 364 (534)
...|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+++.+. .+.|+.+|++|....+
T Consensus 4 ~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--~~~~g~~~~dE~~~~l 81 (166)
T 1v9t_A 4 DPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNGL 81 (166)
T ss_dssp SCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCC--BCCCCCCBCCCGGGSC
T ss_pred CeEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCC--CCCCCCcccccccccc
Confidence 45899999999999999999999999999999999999999999999999999999986543 3457899999975555
Q ss_pred cCCcceEEEEecc-CCCCCCccEEEeccCCCCCCCC-----CcEEEEEEcChHHHHHHhcCCCCC----CCCCccceEEE
Q 009461 365 LHSGRGVVSMANS-GPHTNGSQFFILYKSATHLNYK-----HTVFGGVVGGLTTLAAMEKVPVDE----NDRPLEEIKIT 434 (534)
Q Consensus 365 ~h~~rG~lsman~-g~ntngSQFFItl~~~p~LD~k-----~tVFGrVveGmdvL~~Ie~~~td~----~~rP~~~I~I~ 434 (534)
. +.+|+|||||. +||+|+|||||++.+++|||++ |+|||+|++||+||++|++++++. .++|..+|+|.
T Consensus 82 ~-~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I~ 160 (166)
T 1v9t_A 82 R-NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160 (166)
T ss_dssp C-CCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEE
T ss_pred c-CCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEEE
Confidence 5 46999999997 6999999999999999999998 999999999999999999999986 47999999999
Q ss_pred EEEEE
Q 009461 435 GVTVF 439 (534)
Q Consensus 435 ~~~Vl 439 (534)
+|+|+
T Consensus 161 ~~~v~ 165 (166)
T 1v9t_A 161 SATVL 165 (166)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99986
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=2.1e-42 Score=360.47 Aligned_cols=154 Identities=42% Similarity=0.717 Sum_probs=145.5
Q ss_pred EEEEEEe-----CeeEEEEeCCCCChhhHHHHHHHHhc--------c---ccCCcEEEEeecCcEEeecCCC-CCCCCCC
Q 009461 287 YVQLHTT-----HGDLNIELHCDITPRSCENFITLCER--------G---YYNGVAFHRSIRNFMIQGGDPT-GTGRGGE 349 (534)
Q Consensus 287 ~V~l~T~-----~G~I~IeL~~d~aP~tv~NF~~L~~~--------g---~Y~gt~FhRvi~~f~IQgGdpt-g~g~gg~ 349 (534)
.|.|.|+ .|+|+|+||++.||+||+||+.||++ | ||+|+.|||||++|||||||++ ++|+||+
T Consensus 17 ~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~~ 96 (370)
T 1ihg_A 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGE 96 (370)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCC
T ss_pred eEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCCC
Confidence 4555544 89999999999999999999999987 6 7999999999999999999999 8999999
Q ss_pred ccCCCCCCCccCccccCCcceEEEEeccCCCCCCccEEEeccCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCcc
Q 009461 350 SIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNYKHTVFGGVVGGLTTLAAMEKVPVDENDRPLE 429 (534)
Q Consensus 350 si~g~~f~dE~~~~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~k~tVFGrVveGmdvL~~Ie~~~td~~~rP~~ 429 (534)
+|||.+|+|| +..++|+++|+|||||.|||+||||||||+.++||||++|+|||+|++||+||++|+.++++. ++|..
T Consensus 97 ~~~~~~~~~e-~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~~ 174 (370)
T 1ihg_A 97 SIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAK 174 (370)
T ss_dssp BTTBSCBCCC-CCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEESS
T ss_pred CCCCCCcCCC-cCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccce
Confidence 9999999999 578999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred ceEEEEEEEEeCC
Q 009461 430 EIKITGVTVFVNP 442 (534)
Q Consensus 430 ~I~I~~~~Vl~dP 442 (534)
+|+|.+|+++.++
T Consensus 175 ~v~I~~~g~l~~~ 187 (370)
T 1ihg_A 175 LCVIAECGELKEG 187 (370)
T ss_dssp CEEEEEEEEECTT
T ss_pred eEEEEEEEEeccC
Confidence 9999999999765
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-37 Score=324.58 Aligned_cols=147 Identities=26% Similarity=0.424 Sum_probs=132.8
Q ss_pred CcceEEEEEEe--------CeeEEEEeCCCCChhhHHHHHHHHhccccCCcEEEEeecCcEEeecCCCCCCCC-------
Q 009461 283 KKKGYVQLHTT--------HGDLNIELHCDITPRSCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRG------- 347 (534)
Q Consensus 283 k~k~~V~l~T~--------~G~I~IeL~~d~aP~tv~NF~~L~~~g~Y~gt~FhRvi~~f~IQgGdptg~g~g------- 347 (534)
..+.+|.|.|+ .|+|+|+||++.||+||+||+.||+.|||+|+.|||| ++||||||||+++|.|
T Consensus 168 ~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g 246 (369)
T 3rfy_A 168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTE 246 (369)
T ss_dssp CSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCC
T ss_pred CCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccC
Confidence 46789999997 8999999999999999999999999999999999999 9999999999988776
Q ss_pred --------------CCccCCCCCCCcc----CccccCCcceEEEEecc--CCCCCCccEEEec-------cCCCCCCCCC
Q 009461 348 --------------GESIWGKPFKDEV----NSKLLHSGRGVVSMANS--GPHTNGSQFFILY-------KSATHLNYKH 400 (534)
Q Consensus 348 --------------g~si~g~~f~dE~----~~~l~h~~rG~lsman~--g~ntngSQFFItl-------~~~p~LD~k~ 400 (534)
+.++|+.+|++|. .+.++|+.+|+|||||. +||+||||||||+ .+++|||++|
T Consensus 247 ~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgky 326 (369)
T 3rfy_A 247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRY 326 (369)
T ss_dssp CCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCE
T ss_pred cCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCe
Confidence 5789999998872 45789999999999998 8999999999999 4789999999
Q ss_pred cEEEEEEcChHHHHHHhcCCCCCCCCCccceEEEEEEEEeC
Q 009461 401 TVFGGVVGGLTTLAAMEKVPVDENDRPLEEIKITGVTVFVN 441 (534)
Q Consensus 401 tVFGrVveGmdvL~~Ie~~~td~~~rP~~~I~I~~~~Vl~d 441 (534)
+|||+|++|||||++|++.. +|.++.|+.+
T Consensus 327 tVFG~VveGmdVVdkI~~GD-----------~I~sv~I~~g 356 (369)
T 3rfy_A 327 AVFGYVTDNEDFLADLKVGD-----------VIESIQVVSG 356 (369)
T ss_dssp EEEEEEEESTTGGGGCCTTC-----------EEEEEEEEEC
T ss_pred eEEEEEecCHHHHHHHhCCC-----------ceEEEEEecC
Confidence 99999999999999998742 3777777654
No 37
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.34 E-value=3.6e-07 Score=71.68 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=47.1
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEec
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 96 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~Lq 96 (534)
.|+||+|+..|.+- |+..+||+||..+||++...... .||+|+++++.+|+|.++
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCCChhhcEECc
Confidence 48999999999975 54458999999999999876543 799999999999999876
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.29 E-value=5.9e-07 Score=70.24 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=49.7
Q ss_pred Cccccccccc-cccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 36 GEYHCPVLNK-VFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 36 ~~~~CPVt~k-~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
.++.||||.. .|.+....+++.+|||+|+.+||+++.... ...||+|..++...|++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCccccccceee
Confidence 3688999999 898887766778999999999999984432 3589999999999998864
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.25 E-value=7.7e-07 Score=78.22 Aligned_cols=88 Identities=13% Similarity=0.320 Sum_probs=73.2
Q ss_pred cchhhhhcCCCCCCCCccCCCCceeEEeecCCCCccccccccccccCc---eeEEEEecCCeeecHHHHHHHhhccCCcc
Q 009461 3 ITPYIRKYGKHPVTGTPLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWK 79 (534)
Q Consensus 3 i~p~i~k~~~~Pvtg~pl~lKDLi~l~f~~n~~~~~~CPVt~k~ft~~---t~iv~ik~cG~V~s~~~v~~l~~k~k~~~ 79 (534)
|..||+...++|+-.+++..+++.++.+. +....||||...|.+. .+.+++-+|||+|+..|+++.....+ .
T Consensus 41 i~~~~~~~~~CP~Cr~~~~~~~l~~l~i~---~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~ 115 (133)
T 4ap4_A 41 LRDSLKNANTCPTCRKKINHKRYHPIYIG---SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--T 115 (133)
T ss_dssp HHHHHTTCSBCTTTCCBCTTTCEEECBCS---SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS--B
T ss_pred HHHHHHhCCCCCCCCCcCccccccccccC---CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC--C
Confidence 56799999999999999999999887654 3467899999999763 34456779999999999998765443 8
Q ss_pred cCCCCcCCCCCCcEEe
Q 009461 80 ELLTDEPFTKEDLITI 95 (534)
Q Consensus 80 clv~~~~f~~~DiI~L 95 (534)
||+|..++..++++.|
T Consensus 116 CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 116 CPTCRKKINHKRYHPI 131 (133)
T ss_dssp CTTTCCBCCGGGEEEE
T ss_pred CCCCCCcCChhcceee
Confidence 9999999999999875
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.99 E-value=5.1e-06 Score=63.96 Aligned_cols=58 Identities=14% Similarity=0.313 Sum_probs=47.9
Q ss_pred CccccccccccccCc---eeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 36 GEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~---t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
+.+.||||...|.+. .+.+++.+|||+|+.+|+.++.... ..||+|..++...|++.|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--CCCCCCCccCCccceeee
Confidence 357899999999863 2455678999999999999876543 489999999999999875
No 41
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=5.2e-06 Score=68.14 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=47.6
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhcc-CCcccCCCCcCCCCCCcEEe
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~-k~~~clv~~~~f~~~DiI~L 95 (534)
...+.||||...|.+..+..++-+|||+||.+||.++.... ....||+|..++...||..|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 34688999999999876544556999999999999976533 23589999999988776443
No 42
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.91 E-value=1e-05 Score=80.66 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=62.3
Q ss_pred cchhhhhcCCCCCCCCcc--CCCCceeEEeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCccc
Q 009461 3 ITPYIRKYGKHPVTGTPL--KLEDLIPLTFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKE 80 (534)
Q Consensus 3 i~p~i~k~~~~Pvtg~pl--~lKDLi~l~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~c 80 (534)
.+||+.++-.+|+-+... .=.||+ + . .....+.||+|...|++= |.+..|||+||..||.++......|.|
T Consensus 149 ~~~~i~~~P~~~lPd~~~~~dDDDI~-v--~-~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~C 221 (267)
T 3htk_C 149 VLPYIWNDPTCVIPDLQNPADEDDLQ-I--E-GGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDC 221 (267)
T ss_dssp HHHHHHHCTTBCCCCCSSTTCSSCCC-C--C-SSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEEC
T ss_pred HccccccCCCCCCCCCCCCCCCccce-e--c-CCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCC
Confidence 368999988888765321 112221 1 1 123468999999999876 556799999999999998665556899
Q ss_pred CC--CCcCCCCCCcEE
Q 009461 81 LL--TDEPFTKEDLIT 94 (534)
Q Consensus 81 lv--~~~~f~~~DiI~ 94 (534)
|+ |.+++...|+++
T Consensus 222 PvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 222 PQAACSQVVSMRDFVR 237 (267)
T ss_dssp SGGGCSCEECGGGEEE
T ss_pred CcccccCcCchhhCCc
Confidence 99 999999888874
No 43
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.90 E-value=5.4e-06 Score=65.39 Aligned_cols=59 Identities=15% Similarity=0.354 Sum_probs=48.5
Q ss_pred CCccccccccccccCc---eeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 35 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~---t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
.+.+.||||...|.+. ...+++-+|||+|+.+||.++.... ..||+|..++...+++.|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCccChhheeec
Confidence 4578999999999764 3556788999999999999976544 389999999999888754
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.86 E-value=1.8e-05 Score=67.87 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=45.0
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
.+|.||+|...|.+- | +-+|||+|+..||++.... +..||+|+.+|+..++|+
T Consensus 28 ~~~~CpI~~~~m~dP---V-~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---V-RLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp TTTBCTTTCSBCSSE---E-EETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCTTSSEE
T ss_pred HhhCCcCccCcccCC---e-ECCCCCEEchHHHHHHHHc--CCCCCCCCCCCChhhceE
Confidence 469999999999986 3 3469999999999997653 468999999999988885
No 45
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.3e-05 Score=63.93 Aligned_cols=54 Identities=7% Similarity=0.074 Sum_probs=44.7
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
..+.||||...|.+- +.+.+|||+|+.+||.+.... ...||+|..++...|++.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 14 PYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp GGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcccccc
Confidence 468999999999874 456799999999999987643 348999999999887764
No 46
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.82 E-value=2.7e-05 Score=62.72 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=44.0
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
..+.||||...|.+- |. -+|||+|+..||.+.... ....||+|..++...+++.
T Consensus 7 ~~~~C~IC~~~~~~P---v~-~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VI-VSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSCTTTSCCCSSE---EE-ETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEE
T ss_pred ccCCCCCccccccCC---EE-cCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhCcc
Confidence 468999999999874 32 389999999999997643 2458999999999877764
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.81 E-value=1.7e-05 Score=65.89 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=44.8
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
.+|.||+|...|++- | +-+|||+|+..||++.... +..||+|+++|+..++|+
T Consensus 13 ~~~~CpI~~~~m~dP---V-~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---V-RLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp TTTBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCGGGCEE
T ss_pred hheECcccCchhcCC---e-ECCCCCEECHHHHHHHHhc--CCCCCCCcCCCChHhcch
Confidence 479999999999985 3 4569999999999997653 358999999999888775
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.80 E-value=2.3e-05 Score=66.99 Aligned_cols=54 Identities=11% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCccccccccccccCceeEEEEecCC-eeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTG-NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG-~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
..+|+||||...|++= ++-+|| |+|+..||++.... +..||+|+++|+..++|+
T Consensus 20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChhhceE
Confidence 3479999999999986 345899 99999999997654 458999999999888884
No 49
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=3e-05 Score=61.42 Aligned_cols=54 Identities=20% Similarity=0.435 Sum_probs=43.2
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhc-cCCcccCCCCcCCCCCCc
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k-~k~~~clv~~~~f~~~Di 92 (534)
...+.||||...|.+- +.+ +|||+|+.+||.++... .....||+|..++...|+
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4568999999999863 333 99999999999997642 234589999999988775
No 50
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=2.7e-05 Score=60.84 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=43.4
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCc
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~Di 92 (534)
...+.||||...|.+-.. -+|||+|+.+||.+... .....||+|..++..+||
T Consensus 13 ~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 457899999999987632 49999999999999764 234589999999998775
No 51
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.71 E-value=5.4e-05 Score=61.23 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=45.6
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhcc----CCcccCCCCcCCCCCCcEE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT----KNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~----k~~~clv~~~~f~~~DiI~ 94 (534)
...+.||||...|.+-. +-+|||+||..|+.++.... ....||+|..++...++..
T Consensus 17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp CTTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEE
T ss_pred ccCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCc
Confidence 34689999999998752 45899999999999876542 2568999999999887775
No 52
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=3.4e-05 Score=65.09 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=43.6
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhcc----CCcccCC--CCcC-CCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT----KNWKELL--TDEP-FTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~----k~~~clv--~~~~-f~~~DiI~ 94 (534)
.+|.||||...|.+- |.+..|||+|+..||.++.... ....||+ |... ++..|+++
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 469999999999974 5555699999999999986543 2468999 5555 88777774
No 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.69 E-value=2.2e-05 Score=62.95 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=43.7
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
..+.||||...|.+- |.+..|||+|++.||.+.........||+|..++...|.+
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 468999999999875 3343499999999999976644345899999998777765
No 54
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.66 E-value=2.2e-05 Score=63.26 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=46.3
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
...+.||||...|.+...++ +-+|||+|+.+||.+..... ..||+|..+|...+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVR-QLPCNHLFHDSCIVPWLEQH--DSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEE-ECTTSCEEETTTTHHHHTTT--CSCTTTCCCCCCSCSCC
T ss_pred CCCCCCeeCCccccCCCCEE-EeCCCCeecHHHHHHHHHcC--CcCcCcCCccCCcccCC
Confidence 34689999999998776544 45899999999999976433 48999999999888774
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.62 E-value=4.2e-05 Score=72.45 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=44.7
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
..|+||+|...|++- | +-+|||+||..||.+....... .||+|+.+|+..|+|+
T Consensus 105 ~~f~CPI~~elm~DP---V-~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 105 DYLCGKISFELMREP---C-ITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIP 158 (179)
T ss_dssp GGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEE
T ss_pred HhhcccCccccCCCC---e-ECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcc
Confidence 469999999999974 3 3489999999999997654332 6999999999888885
No 56
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.61 E-value=6.1e-05 Score=62.51 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=39.9
Q ss_pred CccccccccccccCceeEEEEec-CCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKT-TGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~-cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
..+.||||...|.+- |.+ + |||+||..||.+.........||+|..+|.
T Consensus 12 ~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSC---EEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCc---eEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 468999999999875 333 6 999999999998765444468999999984
No 57
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=3.5e-05 Score=60.07 Aligned_cols=53 Identities=15% Similarity=0.376 Sum_probs=42.9
Q ss_pred CCccccccccccccCc---eeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 35 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~---t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
...+.||||...|.+. .+.+++.+|||+|+.+||+++.... ..||+|..+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--CCCCCCCCccCc
Confidence 4568999999999864 3556678999999999999976543 489999998875
No 58
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.57 E-value=6e-05 Score=69.56 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=42.7
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.+.||||...|.+- |.+.+|||+||..||.++.... ...||+|..++...+.+
T Consensus 54 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~l 106 (165)
T 2ckl_B 54 ELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSG-NKECPTCRKKLVSKRSL 106 (165)
T ss_dssp HHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTT-CCBCTTTCCBCCSGGGE
T ss_pred CCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhC-cCCCCCCCCcCCCcccC
Confidence 57999999999973 5556999999999999976542 35899999999765544
No 59
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.57 E-value=4.6e-05 Score=56.98 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=42.5
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
..+.||||...|.+....+++.+|||+|+.+||.++.... ..||+|..+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 4688999999998766667788999999999999976544 48999988764
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.55 E-value=4.2e-05 Score=75.29 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=44.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
..|.||||...|++- ++-+|||+||..||++...... ..||+|+.+++..++|+
T Consensus 207 ~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 207 DYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp STTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGGGCEE
T ss_pred cccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCchhcCcc
Confidence 468999999999986 3467999999999998765432 24999999999888874
No 61
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=0.00015 Score=58.88 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=39.5
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
...+.||||...|.+- ++-+|||+||..||.++... ...||+|..++.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3468999999999873 34699999999999997643 348999999886
No 62
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=5e-05 Score=60.22 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
...+.||||...|.+- + +-+|||+|+++||.++.... ..||+|..+|...+++
T Consensus 13 ~~~~~C~IC~~~~~~~---~-~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---V-SLPCKHVFCYLCVKGASWLG--KRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSE---E-EETTTEEEEHHHHHHCTTCS--SBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCC---E-EccCCCHHHHHHHHHHHHCC--CcCcCcCchhCHhhcc
Confidence 3468999999999764 3 33899999999999865433 4899999999876654
No 63
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.48 E-value=9.2e-05 Score=62.44 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=42.1
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.+.||||...|.+- +.+.+|||+||..||.+..... ..||+|..++...+++
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~l~ 73 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYK--TQCPTCCVTVTEPDLK 73 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCCGGGCE
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCC--CCCCCCCCcCChhhCC
Confidence 57899999999873 4445899999999999976533 4899999999876654
No 64
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=0.00017 Score=57.63 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=49.5
Q ss_pred CCCCceeEEeecCC--CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 21 KLEDLIPLTFHKNA--EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 21 ~lKDLi~l~f~~n~--~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
.++.|-.+.|..+. .....||||...|.+...++ .-+|||+|+.+||.+..... ..||+|..++..
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~-~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLR-VLPCNHEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEE-EETTTEEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEE-EECCCCHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 35566666665542 45688999999998776544 45799999999999975443 489999988764
No 65
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=8e-05 Score=60.23 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=43.6
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhc----cCCcccCCCCcCCCCCCcE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK----TKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k----~k~~~clv~~~~f~~~DiI 93 (534)
...+.||||...|.+-. +-+|||+||.+|+.++... .....||+|..++...|++
T Consensus 17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPL----SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCTTTCSCCSSCB----CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred cCCCCCCCCCcccCCce----eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 34689999999998742 2389999999999987544 2246899999999987765
No 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.41 E-value=0.00011 Score=64.38 Aligned_cols=60 Identities=15% Similarity=0.363 Sum_probs=49.2
Q ss_pred CCccccccccccccCc---eeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEec
Q 009461 35 EGEYHCPVLNKVFTEF---THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQ 96 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~---t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~Lq 96 (534)
.+.+.||||...|.+. .+.+++-+|||+|+++||.+...... .||+|..+|...+++.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS--BCTTTCCBCTTTCEEECB
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC--CCCCCCCcCccccccccc
Confidence 3568999999999865 34556779999999999999765443 899999999999988764
No 67
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.39 E-value=0.00011 Score=62.53 Aligned_cols=54 Identities=11% Similarity=0.274 Sum_probs=44.0
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
.+.||||...|.+- |.+-+|||+||+.||.+.....+ ..||+|..+|...+++.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCEE
T ss_pred CCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCCHHHhHh
Confidence 57899999999863 44479999999999998765442 48999999998877774
No 68
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.00027 Score=56.19 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=41.1
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
....||||...|.+...++. -+|||+|+.+||.+...... .||+|..+|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 46789999999987766554 47999999999998765433 89999988854
No 69
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.36 E-value=5.9e-05 Score=60.56 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=43.0
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhcc-----CCcccCCCCcCCCCCCcE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-----KNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~-----k~~~clv~~~~f~~~DiI 93 (534)
...+.||||...|.+-. +-+|||+||.+||.++.... ....||+|..++...|+.
T Consensus 10 ~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL----SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSCC----CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCee----ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 35689999999998752 23899999999999865431 245899999999876654
No 70
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.33 E-value=0.00024 Score=60.86 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=40.9
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 90 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~ 90 (534)
..+.||||...|.+- |.+.+|||+||..||.+..... ..||+|..++...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETS--KYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhC--CcCcCCCcccccc
Confidence 468999999999874 4456999999999999975443 4899999988764
No 71
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.29 E-value=0.0003 Score=55.09 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=40.7
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
+....||||...|.....++ +-+|||+|+..||.+..... ..||+|..++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVR-RLPCMHLFHQVCVDQWLITN--KKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEE-ECTTSCEEEHHHHHHHHHHC--SBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEE-EeCCCCHHHHHHHHHHHHcC--CCCcCcCccccC
Confidence 34688999999997655444 55899999999999876544 379999888764
No 72
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00011 Score=57.93 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=42.3
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
...+.||||...|.+ ++-+|||+|+.+|+.++.. ....||+|..++...+.+
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCCCcc
Confidence 346899999999987 4568999999999998654 345899999999876654
No 73
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.25 E-value=0.00023 Score=62.12 Aligned_cols=59 Identities=24% Similarity=0.381 Sum_probs=45.4
Q ss_pred eecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 30 FHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 30 f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
|...-...+.||||...|.+- | +-+|||+||..||.+...... ..||+|..++...+++
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREA---V-QTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLENQLF 69 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCGGGCE
T ss_pred hccCCCCCCCCCcCChhhcCe---E-ECCcCChhhHHHHHHHHhhCC-CCCCCCCCCcCHHhcc
Confidence 333335578999999999875 3 348999999999998654432 3899999999887765
No 74
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.25 E-value=0.00013 Score=62.36 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=42.4
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhcc-CCcccCCCCcCCCCCCcE
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~-k~~~clv~~~~f~~~DiI 93 (534)
.+.||||...|.+-. +-+|||+||.+||.++.... ....||+|..++...+++
T Consensus 21 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKEPV----STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSSCC----BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcCeE----ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 578999999998752 24899999999999876532 235899999999887665
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00032 Score=54.04 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=35.2
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhc-cCCcccCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLT 83 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k-~k~~~clv~ 83 (534)
...+.||||...|.+- +.+ +|||+|++.||.++... .....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4578999999999874 333 99999999999997652 234579987
No 76
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.23 E-value=0.00027 Score=62.06 Aligned_cols=48 Identities=4% Similarity=0.122 Sum_probs=39.1
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
.+.||||...|.+- |. -+|||+||..||.+... .....||+|..+|..
T Consensus 52 ~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---IT-TVCQHNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EE-CTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EE-eeCCCcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 57899999999864 32 39999999999998654 334589999999976
No 77
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.20 E-value=0.00019 Score=53.68 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=41.1
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
+...||||...|.+....+.+..|||+|+.+|+.+.... ...||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 457899999999987766666669999999999986543 348999987663
No 78
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.16 E-value=0.00048 Score=57.43 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=40.7
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
....||||...|.....++. -+|||+|+..||.+..... ..||+|..+|..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 46889999999988765554 4699999999999975443 389999987753
No 79
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.14 E-value=7e-05 Score=58.52 Aligned_cols=31 Identities=23% Similarity=0.629 Sum_probs=28.3
Q ss_pred CcchhhhhcCCCCCCCCccCCCCceeEEeec
Q 009461 2 SITPYIRKYGKHPVTGTPLKLEDLIPLTFHK 32 (534)
Q Consensus 2 ~i~p~i~k~~~~Pvtg~pl~lKDLi~l~f~~ 32 (534)
.|..||+++++||+||+||+.+|||++++..
T Consensus 30 ~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~~ 60 (61)
T 2bay_A 30 LLEQYVKDTGNDPITNEPLSIEEIVEIVPSA 60 (61)
T ss_dssp HHHHHHHHHSBCTTTCCBCCGGGCEECCCC-
T ss_pred HHHHHHHhCCCCcCCcCCCChhhcEECccCC
Confidence 4889999999999999999999999999864
No 80
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.06 E-value=0.00049 Score=61.71 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=37.3
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
++.||||...|.+- | +-+|||+||..||.+..... ..||+|..++..
T Consensus 53 ~~~C~iC~~~~~~~---~-~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---V-TLNCAHSFCSYCINEWMKRK--IECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---E-EETTSCEEEHHHHHHHTTTC--SBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---e-ECCCCCCccHHHHHHHHHcC--CcCCCCCCcCCC
Confidence 46899999999864 3 44899999999999865433 479999987753
No 81
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.00 E-value=0.00013 Score=63.61 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=40.3
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.+.||||...|.+- |.+.+|||+||..||.++.. ..||+|..++...|+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCcccccc
Confidence 58899999999875 44559999999999998643 4799999998765543
No 82
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.00 E-value=0.00062 Score=62.28 Aligned_cols=50 Identities=6% Similarity=0.089 Sum_probs=40.5
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
.+.||||...|.+- | +-+|||+||..||.+.... ....||+|..++...+
T Consensus 78 ~~~C~IC~~~~~~p---v-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---V-TTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNY 127 (150)
T ss_dssp HTBCTTTSSBCSSE---E-ECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC
T ss_pred CCEeecCChhhcCC---E-EcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCC
Confidence 47899999999874 2 3599999999999997653 3358999999998763
No 83
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.93 E-value=0.0006 Score=53.10 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=39.2
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
....||||...|.+. +++-+|||+|++.|+.+..... ..||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQN--PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHS--CSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCc--CcCcCCChhhH
Confidence 457899999999864 3567899999999999865433 48999999886
No 84
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.87 E-value=0.00087 Score=57.64 Aligned_cols=55 Identities=5% Similarity=0.074 Sum_probs=42.0
Q ss_pred CccccccccccccCce--------------eEEEEecCCeeecHHHHHHHhhc---cCCcccCCCCcCCCCC
Q 009461 36 GEYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIK---TKNWKELLTDEPFTKE 90 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t--------------~iv~ik~cG~V~s~~~v~~l~~k---~k~~~clv~~~~f~~~ 90 (534)
.+..||||...|.... .++.+-+|||+|+.+||.+.... .....||+|-..|...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999996532 45567899999999999987632 2345899999998754
No 85
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.84 E-value=0.00076 Score=58.37 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=42.7
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
..+.||||...|.+- | +-+|||+|+..||.+..... ...||+|..++...|++
T Consensus 22 ~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHILADP---V-ETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHhcCc---E-EcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCHhhcc
Confidence 368999999999864 2 25999999999999876542 24899999999887765
No 86
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.75 E-value=0.0013 Score=60.77 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=46.8
Q ss_pred EeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 29 TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 29 ~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.|...-+..|.||||...|.+- | .-+|||+||..||.++..... ..||+|..++...+++
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p---v-~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~~ 69 (170)
T 3hcs_A 10 EFDPPLESKYECPICLMALREA---V-QTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLENQLF 69 (170)
T ss_dssp EESSCCCGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCGGGCE
T ss_pred hhccCCCCCCCCCCCChhhcCc---E-ECCCCCHHHHHHHHHHHHhCC-CCCCCCccCcchhhhh
Confidence 3544445679999999999875 2 358999999999999754332 3899999999887765
No 87
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.74 E-value=0.0016 Score=50.78 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=41.3
Q ss_pred ccccccccccccCceeEEEEecCCee-ecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V-~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
...|+||+..+.+. .+++.||||+ ++++|+.++.... +.||+|..++. ++|.|
T Consensus 7 ~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~--~~i~i 60 (63)
T 2vje_B 7 LKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAG--ASCPICKKEIQ--LVIKV 60 (63)
T ss_dssp GSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTT--CBCTTTCCBCC--EEEEE
T ss_pred CCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhC--CcCCCcCchhh--ceEEE
Confidence 57899999988764 2445799998 9999999976543 58999999885 45543
No 88
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.65 E-value=0.00089 Score=70.37 Aligned_cols=54 Identities=9% Similarity=0.176 Sum_probs=42.9
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
...||||...+.+ .++-+|||+||..|+.+.... ....||+|-.++...++|.+
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCceeEec
Confidence 3689999999865 356799999999999886542 23489999999998777643
No 89
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.64 E-value=0.00069 Score=55.39 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCccccccccccccCceeEEEEec--CCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKT--TGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~--cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
..++.||||...|+.... .+.+ |||.||..|+.++... ....||+|-++|...+++
T Consensus 9 ~~~~~CpICle~~~~~d~--~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI--NFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT--TCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccc--cccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCCchh
Confidence 456899999998864221 2344 9999999999997533 346899999999987765
No 90
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.61 E-value=0.00062 Score=58.86 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=37.5
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.+.||||...|.+- |.+ +|||+||..||.++.... ...||+|..++.
T Consensus 15 ~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEKA-SLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCTT-TSBCTTTCCBCH
T ss_pred CCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhHC-cCCCCCCCcccC
Confidence 68999999999864 333 999999999999865432 358999988775
No 91
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.0015 Score=49.02 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=34.5
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhc-cCCcccCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLT 83 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k-~k~~~clv~ 83 (534)
...+.||||...|.+- ++-+|||+|+.+||.+.... .....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3468999999999875 23489999999999997432 234578887
No 92
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.50 E-value=0.00054 Score=57.33 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=38.4
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhc---c---CCcccCC--CCcC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK---T---KNWKELL--TDEP 86 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k---~---k~~~clv--~~~~ 86 (534)
..+.||||...|... .++.+.+|||.||.+|+.++... . ....||. |...
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468899999998754 34456689999999999987432 2 2358999 9887
No 93
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.41 E-value=0.0023 Score=52.23 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=43.0
Q ss_pred ccccccccccccCceeEEEEecCCee-ecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCCCCCCcccccc
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNPNALDTKVTLE 108 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V-~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP~n~~~r~~~~ 108 (534)
...|+||...+.+ +++-||||+ ||.+|+..+ +.||+|..++.. +|.+.=|.+....+|.+
T Consensus 18 ~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~--~~~i~~p~~~~~~~~~~ 78 (79)
T 2yho_A 18 AMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL------QSCPVCRSRVEH--VQHVYLPTHTSLLNLTV 78 (79)
T ss_dssp HTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC------SBCTTTCCBCCE--EEECBCTTCCC------
T ss_pred CCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc------CcCCCCCchhhC--eEEEEeCcchhhhhhhc
Confidence 4689999988875 356799999 999999874 489999999975 56666676666555544
No 94
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.26 E-value=0.0046 Score=48.26 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=40.8
Q ss_pred CccccccccccccCceeEEEEecCCee-ecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V-~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
.+..|+||...+.+. +++..||||+ ++++|+.++... .+.||+|..++. ++|.|
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~--~~i~i 61 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQ--MIVLT 61 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCC--EEEEE
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchh--ceEee
Confidence 356899999988764 2223499999 899999997653 358999999885 45554
No 95
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.21 E-value=0.0021 Score=52.38 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=37.6
Q ss_pred cccccccccccC-----------ceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 38 YHCPVLNKVFTE-----------FTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 38 ~~CPVt~k~ft~-----------~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
-.|+||...|.+ ...++++-+|||+|..+||.+...... .||+|-.+|..++
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLCQQDWVVQR 78 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC--BCTTTCCBCCEEE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC--CCCCcCCCcchhh
Confidence 347777776643 444566667999999999999654433 8999998886543
No 96
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.20 E-value=0.0013 Score=59.65 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 90 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~ 90 (534)
+..|.||||...|.+- | .-+|||+||..||.++.. .....||+|..++...
T Consensus 29 ~~~~~C~IC~~~~~~p---v-~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---F-QAQCGHRYCSFCLASILS-SGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHGG-GSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---E-ECCCCCccCHHHHHHHHh-cCCCCCCCCCCccccc
Confidence 4679999999999876 2 359999999999999754 3335899998865433
No 97
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.0018 Score=51.87 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=36.5
Q ss_pred ccccccccccccCceeEEEEecCCee-ecHHHHHHHhhccCCcccCCCCcCCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKE 90 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V-~s~~~v~~l~~k~k~~~clv~~~~f~~~ 90 (534)
.+.||||...+.+- ++-+|||+ ||.+|+.++ ..||+|..++...
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhCC------CCCccCCceecCc
Confidence 57899999998764 45699999 999999763 3899999998753
No 98
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.71 E-value=0.002 Score=48.85 Aligned_cols=46 Identities=7% Similarity=0.058 Sum_probs=36.6
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
...+.||||...|.+- ++-+|||+|+..|+.+ ....||+|..++..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----CCCCCCcCCcEeec
Confidence 4567899999999864 3458999999999876 23489999988763
No 99
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.64 E-value=0.005 Score=49.24 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=35.9
Q ss_pred ccccccccccccCceeEEEEecCCee-ecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V-~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
...||||...+.+- ++-+|||+ ||..|+.++ ..||+|..+|..
T Consensus 24 ~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 47899999988763 34599999 999999885 489999998864
No 100
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.54 E-value=0.0082 Score=47.50 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCccccccccccccCceeEEEEecCCee-ecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 98 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V-~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP 98 (534)
.....|+||...+.+ +++-||||+ ||+.|+..+ +.||+|-.++.. +|.|.-|
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~--~~~i~~~ 65 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQE--SFALSGP 65 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHHC------SSCTTTCCCCCC--EECCCSS
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhcC------CCCCCCCcchhc--eEEeecC
Confidence 346789999998875 468999999 999999963 489999998864 5555433
No 101
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.12 E-value=0.018 Score=49.31 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=40.6
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
..|+.|...|.-..+ +-||+||||++|+.....+. ...||.|.+++.+=+.+
T Consensus 2 hfC~~C~~Pi~iygR---mIPCkHvFCydCa~~~~~~~-~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGR---MIPCKHVFCYDCAILHEKKG-DKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp CBCTTTCSBCSEEEE---EETTCCEEEHHHHHHHHHTT-CCBCTTTCCBCSEEEEE
T ss_pred eecCccCCCeEEEee---eccccccHHHHHHHHHHhcc-CCCCcCcCCeeeeeEEe
Confidence 469999999987654 44999999999998865432 23799999999765544
No 102
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=94.74 E-value=0.033 Score=48.03 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=44.8
Q ss_pred ccCCCCceeEEeecCCCCccccccccccccCce--------------eEEEEecCCeeecHHHHHHHhhccCCcccCCCC
Q 009461 19 PLKLEDLIPLTFHKNAEGEYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTD 84 (534)
Q Consensus 19 pl~lKDLi~l~f~~n~~~~~~CPVt~k~ft~~t--------------~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~ 84 (534)
.+++|.+-.|-.-.-+-..-.|+||...|...- -.+++-+|||+|...||.+.... ...||+|-
T Consensus 19 r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr 96 (106)
T 3dpl_R 19 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDN 96 (106)
T ss_dssp SEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSC
T ss_pred ceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCC
Confidence 345555444442211223457999988887541 13556799999999999996543 24899999
Q ss_pred cCCC
Q 009461 85 EPFT 88 (534)
Q Consensus 85 ~~f~ 88 (534)
.+|.
T Consensus 97 ~~~~ 100 (106)
T 3dpl_R 97 REWE 100 (106)
T ss_dssp SBCC
T ss_pred Ccce
Confidence 9875
No 103
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=93.97 E-value=0.25 Score=46.43 Aligned_cols=110 Identities=19% Similarity=0.236 Sum_probs=64.9
Q ss_pred eEEEEEEeCee--EEEEeCCCCChhhHHHHHHHH--hc----cccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCC
Q 009461 286 GYVQLHTTHGD--LNIELHCDITPRSCENFITLC--ER----GYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK 357 (534)
Q Consensus 286 ~~V~l~T~~G~--I~IeL~~d~aP~tv~NF~~L~--~~----g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~ 357 (534)
-|++|.-..+. ++.+|..+.||+||+.|+.+. +. ..|-|-.++-.++.|-. ....
T Consensus 22 r~i~itl~~~g~~~~A~Lldd~APkTcaA~~~~LP~~~~viHarwSGeeVy~~lp~f~~-----------------~~~g 84 (188)
T 3kop_A 22 RYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAP-----------------KEPG 84 (188)
T ss_dssp CEEEEEETTTTEEEEEEECTTTSHHHHHHHHHHCCEEEECEECSSSSSEEEEEEECCSS-----------------SCCC
T ss_pred eEEEEEEecCCeEEEEEEccccChHHHHHHHHhCCCCcceEEEEEecceEEEECCcccc-----------------cCCC
Confidence 47777766653 688999999999999999986 11 12555555433333211 0122
Q ss_pred CccCccccCCcceEEEEecc----------C--------CCCCCccEEEeccCCC--------CCCCCCcEEEEEEcChH
Q 009461 358 DEVNSKLLHSGRGVVSMANS----------G--------PHTNGSQFFILYKSAT--------HLNYKHTVFGGVVGGLT 411 (534)
Q Consensus 358 dE~~~~l~h~~rG~lsman~----------g--------~ntngSQFFItl~~~p--------~LD~k~tVFGrVveGmd 411 (534)
.| +.-.+..+|-|++-.. | .......+.|-++.+. ||-|. ||++|++|+|
T Consensus 85 ~E--N~T~~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN--~F~TIveGle 160 (188)
T 3kop_A 85 AE--NTTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGN--VFATIVEGLD 160 (188)
T ss_dssp SC--SEESSCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEE--EEEEEEESHH
T ss_pred cC--CCCCCCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCc--EEEEEecCHH
Confidence 23 2234455777766310 1 0111246777776554 34443 8999999999
Q ss_pred HHHHH
Q 009461 412 TLAAM 416 (534)
Q Consensus 412 vL~~I 416 (534)
-|..+
T Consensus 161 ~la~~ 165 (188)
T 3kop_A 161 EMAAA 165 (188)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 104
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=93.87 E-value=0.018 Score=59.56 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=36.3
Q ss_pred CccccccccccccCceeEEEEecCCee-ecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNV-FCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V-~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
.+..||||...+.+- | +-+|||+ ||..|+..+ ..||+|-.++..
T Consensus 294 ~~~~C~IC~~~~~~~---v-~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---V-FIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE---E-EETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCce---E-EcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 357899999999763 3 4499999 999999875 489999998864
No 105
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=92.36 E-value=0.23 Score=45.62 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=61.1
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHH--hc--cccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCC-ccCc
Q 009461 288 VQLHTTHGDLNIELHCDITPRSCENFITLC--ER--GYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKD-EVNS 362 (534)
Q Consensus 288 V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~--~~--g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~d-E~~~ 362 (534)
++|.-.-..++++|+.+.||+||+.|+++. +. ..|-+-.++ -+|- .+.- | +.
T Consensus 32 I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~E~y~-~lp~---------------------~l~~~e-n~ 88 (153)
T 2nnz_A 32 LRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYF-TTQV---------------------AVEKEE-NS 88 (153)
T ss_dssp EEEEETTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETTEEEE-CCSC---------------------CCCCSS-CC
T ss_pred EEEEECCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCCcEEE-ECCC---------------------CCCCCC-CC
Confidence 566666678999999999999999999986 11 112211111 0010 0111 1 11
Q ss_pred cccCCcceEEEEeccCCCCCCccEEEeccCCCCCCC------CCcEEEEEEcChHHHHHH
Q 009461 363 KLLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY------KHTVFGGVVGGLTTLAAM 416 (534)
Q Consensus 363 ~l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~------k~tVFGrVveGmdvL~~I 416 (534)
-.....|-|+.-..|. .|-|-|++.|...+ .-.+||+|++|++.|..+
T Consensus 89 -~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 89 -KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp -BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred -cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 1234578887755432 38888888764433 236899999998887665
No 106
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.98 E-value=0.13 Score=41.96 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=42.7
Q ss_pred CCccccccccccccCceeEEEEecCC-----eeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTG-----NVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG-----~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
...-.|+||...|.....+ +.||+ |.|-.+||++-........||+|..+|.-+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3457899999999765554 57885 9999999999766554468999999886544
No 107
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.13 Score=53.48 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=45.3
Q ss_pred cccccccccccCceeEEEEecCCee--ecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V--~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
..||+++..|..=.+ -+.|-|+ |-.+++-+++.....|+||+|++.+.-+|++.
T Consensus 250 L~CPlS~~ri~~PvR---g~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 250 LQCPISYTRMKYPSK---SINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp SBCTTTSSBCSSEEE---ETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred ecCCCccccccccCc---CCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 579999999976532 4579998 88888888888888899999999999999875
No 108
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=90.83 E-value=0.048 Score=47.97 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=0.4
Q ss_pred ccccccccccccCce--------------eEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 37 EYHCPVLNKVFTEFT--------------HIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t--------------~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
.-.|+||...|...- -.+++-+|||+|...||.+..... ..||+|..+|..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREWEF 112 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--CcCCCCCCeeee
Confidence 347999999987521 123345899999999999854332 379999988753
No 109
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.11 E-value=0.3 Score=39.41 Aligned_cols=49 Identities=6% Similarity=0.060 Sum_probs=38.5
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.-.|+||+..|.....+ ..|||.|-..||.+.......-.||+|..++.
T Consensus 15 i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 45799999999976433 39999999999998764432248999998876
No 110
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.78 E-value=0.26 Score=51.16 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=44.7
Q ss_pred cccccccccccCceeEEEEecCCee--ecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNV--FCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V--~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
..||+++..|..=.+ -..|-|+ |-.+.+-+++.....|+||+|++.+.-+|++.
T Consensus 216 L~CPlS~~ri~~P~R---g~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCR---AVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp SBCTTTCSBCSSEEE---ETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeCCCccceeccCCc---CCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 469999999975422 3579998 88888888888778899999999999988874
No 111
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=81.38 E-value=0.57 Score=39.41 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=23.1
Q ss_pred CcchhhhhcCCCCCCCCccCCCCceeEEe
Q 009461 2 SITPYIRKYGKHPVTGTPLKLEDLIPLTF 30 (534)
Q Consensus 2 ~i~p~i~k~~~~Pvtg~pl~lKDLi~l~f 30 (534)
.|..||..+++||+++++|...+|++.+.
T Consensus 49 cI~~~l~~~~~cP~~~~~l~~~~L~pn~~ 77 (98)
T 1wgm_A 49 TIARHLLSDQTDPFNRSPLTMDQIRPNTE 77 (98)
T ss_dssp HHHHHTTTSCBCTTTCSBCCTTTSEECHH
T ss_pred HHHHHHHhCCCCCCCCCCCChhhceEcHH
Confidence 36778888888888888888888887654
No 112
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=80.56 E-value=0.49 Score=35.48 Aligned_cols=41 Identities=15% Similarity=0.404 Sum_probs=28.5
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
..|.|++|.+.|+.... +..+....+.++|..|+..|...+
T Consensus 13 k~~~C~~C~k~F~~~~~---------------l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEA---------------NQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SEEECSSSCCEEEHHHH---------------HHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCccCCCCCchhccHHH---------------hHhhcCCCCCEECCCCCCccccCc
Confidence 46999999999975422 223223345689999999997654
No 113
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=79.85 E-value=0.54 Score=38.36 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=23.1
Q ss_pred CcchhhhhcCCCCCCCCccCCCCceeEEe
Q 009461 2 SITPYIRKYGKHPVTGTPLKLEDLIPLTF 30 (534)
Q Consensus 2 ~i~p~i~k~~~~Pvtg~pl~lKDLi~l~f 30 (534)
.|..||..+++||++|++|+..+|++...
T Consensus 40 ~I~~~l~~~~~cP~~~~~l~~~~l~pn~~ 68 (85)
T 2kr4_A 40 IILRHLLNSPTDPFNRQMLTESMLEPVPE 68 (85)
T ss_dssp HHHHHHHHCSBCTTTCCBCCGGGCEECHH
T ss_pred HHHHHHhcCCCCCCCcCCCChHhcchHHH
Confidence 36778888888888888888888877654
No 114
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=79.05 E-value=0.7 Score=39.00 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=22.0
Q ss_pred cchhhhhcCCCCCCCCccCCCCceeEEe
Q 009461 3 ITPYIRKYGKHPVTGTPLKLEDLIPLTF 30 (534)
Q Consensus 3 i~p~i~k~~~~Pvtg~pl~lKDLi~l~f 30 (534)
|..||..+++||++|++|...+|++...
T Consensus 56 I~~~l~~~~~cP~~~~~l~~~~L~pn~~ 83 (100)
T 2kre_A 56 ILRHLLNSPTDPFNRQTLTESMLEPVPE 83 (100)
T ss_dssp HHHHTTSCSBCSSSCCBCCTTSSEECHH
T ss_pred HHHHHHcCCCCCCCCCCCChhhceECHH
Confidence 6678887888888888888888877654
No 115
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=79.00 E-value=1.3 Score=43.21 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=44.0
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEecCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITIQNP 98 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~LqDP 98 (534)
-..|.+|+...+....+- +|++.|-..|+.++......-.||.|+.++... +..+.+|
T Consensus 180 i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~-~~~~~~~ 237 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE-IPKVFDP 237 (238)
T ss_dssp CCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC-CCCCCCC
T ss_pred CCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC-CCCCCCC
Confidence 457999999999764432 499999999999976544445899999998754 5555555
No 116
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=73.39 E-value=0.77 Score=37.51 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=29.9
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
..|.|++|.+.|+....+. .=.+.-...+.+.|.+|++.|...+-+
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~------------~H~~~H~~~k~~~C~~C~k~F~~~~~L 72 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQE------------RHLRLLHAAQVFPCKYCPATFYSSPGL 72 (85)
T ss_dssp TTEECTTSCCEESSHHHHH------------HHHHTTSCSSSEECTTSSCEESSHHHH
T ss_pred CCEECCCCCCCcCcHHHHh------------hhhhhccCCCccCCCCCCCEeCCHHHH
Confidence 3589999999998753211 001111234568999999999875543
No 117
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=70.10 E-value=3.9 Score=47.51 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=44.1
Q ss_pred CccccccccccccCceeEEEEecCC-eeecHHHHHHHhhccCCcccCCCCcCCCCCCcEE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTG-NVFCFEAIKELNIKTKNWKELLTDEPFTKEDLIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG-~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~ 94 (534)
.+|+||++...+.+= ++-++| ..|-..+|++--.. +-.||++..+++..++|+
T Consensus 890 ~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp GGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCEE
T ss_pred HHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcccccc
Confidence 479999999999986 467887 68999999996544 237999999999988885
No 118
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=69.03 E-value=2.4 Score=32.15 Aligned_cols=44 Identities=7% Similarity=0.176 Sum_probs=29.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
-.|.|++|.+.|+....+. .=.+.-...+.+.|.+|++.|....
T Consensus 3 Kpy~C~~C~k~F~~~~~L~------------~H~~~Ht~ekp~~C~~C~k~F~~~~ 46 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS------------RHRRAHLGYRPRSCPECGKCFRDQS 46 (60)
T ss_dssp CCEECTTTCCEESSHHHHH------------HHHHHHHTCCCEECTTTCCEESSHH
T ss_pred CCccCCCCCCEeCCHHHHH------------HHHHHhCCCcCeECCCCCCCcCCHH
Confidence 3699999999998764211 0011122356689999999997643
No 119
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=68.03 E-value=1.4 Score=32.42 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=10.3
Q ss_pred ccCCcccCCCCcC
Q 009461 74 KTKNWKELLTDEP 86 (534)
Q Consensus 74 k~k~~~clv~~~~ 86 (534)
.+..|+||+|+.+
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 3557999999975
No 120
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=67.03 E-value=3.3 Score=29.64 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=27.2
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
..|.|++|.+.|.....+. .=+...-...+.+.|.+|++.|..
T Consensus 11 k~~~C~~C~k~f~~~~~L~-----------~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLN-----------GHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESSHHHHH-----------HHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCCHHHHH-----------HHHHHhcCCCCCccCCCCCCCCCC
Confidence 4699999999998643211 000111123456899999999974
No 121
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=66.58 E-value=2.7 Score=29.84 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=27.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
..|.|++|.+.|.....+. -| .+.-...+.+.|.+|+..|...+
T Consensus 3 ~~~~C~~C~~~f~~~~~l~-----~H-------~~~h~~~~~~~C~~C~~~f~~~~ 46 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLN-----IH-------LRTHTGEKPYKCEFCEYAAAQKT 46 (57)
T ss_dssp --CBCTTTCCBCSCHHHHH-----HH-------HHHHHCCCCEECSSSSCEESSHH
T ss_pred CCccCCCCcchhCChHHHH-----HH-------HHHcCCCCCcCCCCCcchhCCHH
Confidence 3689999999998753211 00 11112345689999999987543
No 122
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=65.98 E-value=0.47 Score=39.03 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=29.5
Q ss_pred CCCCCCCccCCCCceeEEeecCC----------------CCccccccccccccCc
Q 009461 12 KHPVTGTPLKLEDLIPLTFHKNA----------------EGEYHCPVLNKVFTEF 50 (534)
Q Consensus 12 ~~Pvtg~pl~lKDLi~l~f~~n~----------------~~~~~CPVt~k~ft~~ 50 (534)
.||+-|++|+-.+||..-+.... +--|.||+|+.+|-+.
T Consensus 10 ~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~ 64 (95)
T 2k5c_A 10 KCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK 64 (95)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred cCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence 58999999999999987665432 1236799998888654
No 123
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.92 E-value=0.72 Score=34.55 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=29.8
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
..|.|++|.+.|.....+.. .+.+.|.+|+..|....-+
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~-------------------~~~~~C~~C~~~f~~~~~l 55 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR-------------------RKTPMCEKCRKDSCQEAAL 55 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC-------------------SSSCCCHHHHHTCSCCCSS
T ss_pred CCeeCCcccchhCCHHHhCc-------------------CCCCCCCCCChhhcCHHHH
Confidence 46999999999987755432 3457999999999875544
No 124
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=65.00 E-value=3.2 Score=31.36 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=28.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
..|.|++|.+.|.....+. .=.+.-...+.+.|.+|++.|...+
T Consensus 13 k~~~C~~C~k~f~~~~~L~------------~H~~~h~~~~~~~C~~C~~~f~~~~ 56 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILV------------QHQRVHTGEKPYKCLECGKAFSQNS 56 (72)
T ss_dssp CCEECSSSCCEESSHHHHH------------HHHHGGGCSCCEECSSSCCEESSHH
T ss_pred CCccCCCCCCccCCHHHHH------------HHHHhcCCCCCeECCCCCcccCCHH
Confidence 4699999999998653211 0011122345689999999997543
No 125
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=64.53 E-value=3.1 Score=29.51 Aligned_cols=43 Identities=7% Similarity=0.112 Sum_probs=27.0
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
.|.|++|.+.|.....+. .=.+.-...+.+.|.+|+..|...+
T Consensus 1 p~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~~~~ 43 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLK------------KHIRTHTDVRPYHCTYCNFSFKTKG 43 (57)
T ss_dssp CCBCTTTCCBCSSHHHHH------------HHHHHTSSCCCEECSSSSCEESSHH
T ss_pred CCcCCCCcCcCCCHHHHH------------HHHHhcCCCCCccCCCCCchhcCHH
Confidence 488999999998653211 0011112335589999999997543
No 126
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.98 E-value=4.7 Score=34.70 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=41.3
Q ss_pred ccccccccccccCc-eeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcEEe
Q 009461 37 EYHCPVLNKVFTEF-THIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 37 ~~~CPVt~k~ft~~-t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI~L 95 (534)
-|.|..|.+.|.+. ..++ ..-|.+||..++.++--+.. +|-.|++++...+|+.+
T Consensus 32 CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~cy~~~f~~~~--~C~~C~~~I~~~~~~~~ 87 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY--TKSGMILCRNDYIRLFGNSG--AGGSGGHMGSGGDVMVV 87 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE--EETTEEECHHHHHHHHCCCC--SSSCSSCCSCCEESSSS
T ss_pred CCCcCCCCCcccccCCeEE--EECCeeecHHHHHHHcCCCC--ccccCCCCcCchheEEc
Confidence 47899999999742 2332 45699999999998653322 79999999998777654
No 127
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=63.80 E-value=1.9 Score=29.66 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=11.7
Q ss_pred cccccccccccCc
Q 009461 38 YHCPVLNKVFTEF 50 (534)
Q Consensus 38 ~~CPVt~k~ft~~ 50 (534)
|+||+|++.|++.
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 9999999999875
No 128
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=63.50 E-value=4.1 Score=30.83 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
...|.|++|.+.|.....+. + | .+.-...+.++|.+|++.|....
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~--~---H-------~~~H~~~~~~~C~~C~k~f~~~~ 59 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLA--S---H-------KTVHTGEKPYRCNICGAQFNRPA 59 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHH--H---H-------HHHHCCCCSEECTTTCCEESCHH
T ss_pred CCCeECCCCCceeCCHHHHH--H---H-------HHHcCCCCCEECCCCCchhCCHH
Confidence 34699999999998653211 0 0 11112345589999999997643
No 129
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=62.51 E-value=5 Score=32.79 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=28.8
Q ss_pred CCccccccccccc-cCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 35 EGEYHCPVLNKVF-TEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 35 ~~~~~CPVt~k~f-t~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
...|.|++|.+.| +....+. .=.+.- ..+.+.|.+|++.|....
T Consensus 32 ~~~~~C~~C~k~F~~~~~~L~------------~H~~~h-~~k~~~C~~Cgk~F~~~~ 76 (96)
T 2ctd_A 32 KGSVSCPTCQAVGRKTIEGLK------------KHMENC-KQEMFTCHHCGKQLRSLA 76 (96)
T ss_dssp TSCEECTTTCSCEESSHHHHH------------HHHHHH-CCCCCCCSSSCCCCSSHH
T ss_pred CCCcCCCCCCCCcccCHHHHH------------HHHHHH-CCCCeECCCCCCeeCCHH
Confidence 3569999999999 7653311 001112 345689999999998643
No 130
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=62.37 E-value=31 Score=30.80 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=57.8
Q ss_pred EEEEEeCeeEEEEeCCCCChhhHHHHHHHH----hccccCCcEEEEeecCcEEeecCCCCCCCCCCccCCCCCCCccCcc
Q 009461 288 VQLHTTHGDLNIELHCDITPRSCENFITLC----ERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEVNSK 363 (534)
Q Consensus 288 V~l~T~~G~I~IeL~~d~aP~tv~NF~~L~----~~g~Y~gt~FhRvi~~f~IQgGdptg~g~gg~si~g~~f~dE~~~~ 363 (534)
|.+-.....+..+|+.. |.|++.|+++. .-..|. ..++=.+|-.+ . . +| +..
T Consensus 15 ~~~~~~~~~v~a~L~Dn--p~Ta~~~~~~LPl~~~~~~~g-~E~y~~~p~~l-~----~---------------~e-~~~ 70 (136)
T 1zx8_A 15 VELLFESGKCVIDLNEE--YEVVKLLKEKIPFESVVNTWG-EEIYFSTPVNV-Q----K---------------ME-NPR 70 (136)
T ss_dssp EEEECSSCEEEEEEETT--SHHHHHHHHHCSEEEECEESS-SEEEEECSCCC-C----C---------------CS-SEE
T ss_pred EEEeeCCcEEEEEEcCC--HHHHHHHHHHCCcEEEHHHhC-CcEEEECCccC-C----C---------------CC-CCC
Confidence 34444556799999644 88999999987 222343 33332333221 0 0 01 111
Q ss_pred ccCCcceEEEEeccCCCCCCccEEEeccCCCCCCC------CCcEEEEEEcChHHHHHH
Q 009461 364 LLHSGRGVVSMANSGPHTNGSQFFILYKSATHLNY------KHTVFGGVVGGLTTLAAM 416 (534)
Q Consensus 364 l~h~~rG~lsman~g~ntngSQFFItl~~~p~LD~------k~tVFGrVveGmdvL~~I 416 (534)
.-...|-|+.-..|. -|-|-+++.|...+ .-.+||+|.+|++.|..+
T Consensus 71 -~~~~~GDIaYw~pgg-----~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 71 -EVVEIGDVGYWPPGK-----ALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp -SSBCTTEEEEEGGGT-----EEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred -ccCCCCcEEEeCCCC-----EEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 113467777655433 47777888765554 246899999998877655
No 131
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=60.96 E-value=3.5 Score=30.98 Aligned_cols=45 Identities=18% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCcccccc--ccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 35 EGEYHCPV--LNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 35 ~~~~~CPV--t~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
...|.||+ |.+.|.....+. + | .+.-...+.+.|.+|+..|...+
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l~--~---H-------~~~h~~~~~~~C~~C~~~f~~~~ 63 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDELT--R---H-------IRIHTGQKPFQCRICMRNFSRSD 63 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHHH--H---H-------HHHHHCCCCEECTTTCCEESCHH
T ss_pred CCccCCcCCCCCCccCCHHHHH--H---H-------HHhhCCCCCeECCCCCchhCCHH
Confidence 34699985 999998653211 0 0 11112345689999999997644
No 132
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=60.08 E-value=7 Score=29.77 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=37.8
Q ss_pred CCccccccccccccCceeEEEEecCCe-----eecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGN-----VFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~-----V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
++.-.|.||.....+. .+.||.+ .|-.+|+++-.....+..|++|..+|.-
T Consensus 4 ~~~~~CrIC~~~~~~~----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCC----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCc----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456899998875442 3688765 8889999987655455799999998863
No 133
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=58.12 E-value=5.7 Score=29.11 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=28.4
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHH-h-hccCCcccCCCCcCCCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKEL-N-IKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l-~-~k~k~~~clv~~~~f~~~D 91 (534)
+..|.|++|.+.|.....+. .=.+. - ...+.+.|.+|++.|...+
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~------------~H~~~~H~~~~~~~~C~~C~k~f~~~~ 54 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFC------------RHYVTSHKRNVKVYPCPFCFKEFTRKD 54 (66)
T ss_dssp TTEEECTTTCCEESSHHHHH------------HHHHHHSSSSCCCEECTTTCCEESCHH
T ss_pred CcceECCCCcchhCCHHHHH------------HHHHHHcCCCCcCeECCCCCCccCCHH
Confidence 34699999999998653211 00111 1 1345689999999997643
No 134
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=58.05 E-value=4.4 Score=29.14 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=27.4
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCc
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~Di 92 (534)
.|.|++|.+.|.....+.. =.+.-...+.+.|.+|+..|...+.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~------------H~~~h~~~~~~~C~~C~~~f~~~~~ 45 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKR------------HYRSHTNEKPYPCGLCNRAFTRRDL 45 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHH------------HHHTTTSSCSEECTTTCCEESSHHH
T ss_pred cCcCCCCccccCCHHHHHH------------HHHHhCCCCCccCCCCCCccCCHHH
Confidence 4889999999986532110 0011112345789999999976443
No 135
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=57.82 E-value=2.8 Score=39.87 Aligned_cols=9 Identities=22% Similarity=-0.019 Sum_probs=7.9
Q ss_pred cccCCCCcC
Q 009461 78 WKELLTDEP 86 (534)
Q Consensus 78 ~~clv~~~~ 86 (534)
|.||+|+.+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 899999975
No 136
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=56.93 E-value=4.7 Score=30.08 Aligned_cols=45 Identities=4% Similarity=-0.007 Sum_probs=28.4
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
+..|.|++|.+.|.....+. .=.+.-...+.+.|.+|+..|...+
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~------------~H~~~H~~~~~~~C~~C~~~f~~~~ 51 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALR------------IHERIHCTDRPFKCNYCSFDTKQPS 51 (70)
T ss_dssp CCSEECSSSSCEESSHHHHH------------HHHGGGCCSCSEECSSSSCEESSHH
T ss_pred CCCeECCCCCcccCCHHHHH------------HHHHHcCCCCCEeCCCCCCccCCHH
Confidence 34699999999998643211 0001111234589999999997644
No 137
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.47 E-value=4.6 Score=32.70 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCcccccccccccc-CceeEEEEecCCeeecHHHHHHHhhc-cCCcccCCCCcCCCCCCc
Q 009461 35 EGEYHCPVLNKVFT-EFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 35 ~~~~~CPVt~k~ft-~~t~iv~ik~cG~V~s~~~v~~l~~k-~k~~~clv~~~~f~~~Di 92 (534)
...|.|++|.+.|. ....+. -|+ +.-.. .+.+.|.+|++.|....-
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~-----~H~-------~~h~~~~~~~~C~~C~k~F~~~~~ 69 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLK-----KHM-------EVCQKLQDALKCQHCRKQFKSKAG 69 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHH-----HHH-------HHHHHHHHHHSCSSSCCCCSCHHH
T ss_pred CCCcCCCCCCCChhhhHHHHH-----HHH-------HHHcCCCCCEECCCCCCccCCHHH
Confidence 45799999999998 543211 011 00011 234799999999986443
No 138
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=56.38 E-value=38 Score=28.69 Aligned_cols=72 Identities=8% Similarity=0.036 Sum_probs=48.5
Q ss_pred CCCCCccCCCCceeE---EeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCC
Q 009461 14 PVTGTPLKLEDLIPL---TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKE 90 (534)
Q Consensus 14 Pvtg~pl~lKDLi~l---~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~ 90 (534)
+-=|+++....++.+ .|+. .-|.|-.|.+.|.+.. + ....|.+|+..++.++.. -+|..|++++...
T Consensus 7 ~~C~~~I~~~~~~~a~~~~~H~---~CF~C~~C~~~L~~~~-f--~~~~g~~yC~~cy~~~~~----~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 7 AGCDELIFSNEYTQAENQNWHL---KHFCCFDCDSILAGEI-Y--VMVNDKPVCKPCYVKNHA----VVCQGCHNAIDPE 76 (126)
T ss_dssp TTTSSBCCSSCEEEETTEEECG---GGSBCTTTCCBCTTSE-E--EEETTEEEEHHHHHHHSC----CBCTTTCSBCCTT
T ss_pred ccCCCEeCCceEEeeCCCCccC---CCCCcCCCCCCCCcCE-E--EeECCEEechHHhCcCcC----ccCcccCCcCCcC
Confidence 334555554444433 3443 3588999999998753 2 235699999999998542 2799999999864
Q ss_pred C-cEEe
Q 009461 91 D-LITI 95 (534)
Q Consensus 91 D-iI~L 95 (534)
+ +|..
T Consensus 77 ~~~~~a 82 (126)
T 2xqn_T 77 VQRVTY 82 (126)
T ss_dssp SCEEEE
T ss_pred ceEEEC
Confidence 4 4443
No 139
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=56.34 E-value=23 Score=30.18 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=39.7
Q ss_pred CccccccccccccC-ceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC-cEE
Q 009461 36 GEYHCPVLNKVFTE-FTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED-LIT 94 (534)
Q Consensus 36 ~~~~CPVt~k~ft~-~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D-iI~ 94 (534)
.-|.|-.|.+.|.. ...++ ...|.+||..++.++.... .+|..|++++...+ +|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~~y~~~~~~~--~~C~~C~~~I~~~e~~~~ 84 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLY--YKLGRKLCRRDYLRLFGQD--GLCASCDKRIRAYEMTMR 84 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEE--EETTEEECHHHHHHHHCCC--EECTTTCCEECTTSEEEE
T ss_pred HHcccCcCCCccccCCCeEE--EECCEEeecCchhhhCCCc--cChhhcCCccCccceeEe
Confidence 35889999999974 22333 3569999999999865332 27999999987655 444
No 140
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.40 E-value=4.3 Score=30.99 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=28.8
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCc
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~Di 92 (534)
..|.|++|.+.|.....+. -|+ .+-.-....+.+.|.+|++.|...+-
T Consensus 6 k~~~C~~C~k~f~~~~~L~-----~H~----~~h~~~~~~~~~~C~~C~k~f~~~~~ 53 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLN-----WHQ----RKHAETVAALRFPCEFCGKRFEKPDS 53 (78)
T ss_dssp CCEECSSSCCEESSHHHHH-----HHH----HHHHHHTTTCCEECTTTCCEESSHHH
T ss_pred cCeECCCCCCeeCCHHHHH-----HHH----HHhhccCCCcccCCCCCCchhCCHHH
Confidence 4699999999998653211 010 00000002456899999999986443
No 141
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=52.11 E-value=8.5 Score=33.46 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.0
Q ss_pred CccccccccccccCce
Q 009461 36 GEYHCPVLNKVFTEFT 51 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t 51 (534)
-.|.|++|.+.|+...
T Consensus 21 k~y~C~~C~k~F~~~~ 36 (133)
T 2lt7_A 21 VYYICIVCKRSYVCLT 36 (133)
T ss_dssp EEEEETTTCCEESCHH
T ss_pred cCeECCCCCCCcCCHH
Confidence 3599999999998754
No 142
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=51.39 E-value=13 Score=31.37 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=39.3
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTK 89 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~ 89 (534)
-|.|.|-.|--.+.+ .|+=+-|.+|..|+..|-..+. +|++|..++-.
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~Sd--rCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSN--RCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSS--EETTTTEECCC
T ss_pred cCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhcc--CCcccCCcCCc
Confidence 589999999988875 4576789999999998765554 89999998854
No 143
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=49.56 E-value=6.8 Score=29.77 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=28.9
Q ss_pred CCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCc
Q 009461 35 EGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~Di 92 (534)
+..|.|++|.+.|.....+. + | .+.-...+.+.|.+|+..|...+.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~--~---H-------~~~h~~~~~~~C~~C~~~f~~~~~ 61 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLS--K---H-------RRTHTGEKPYKCDECGKAFIQRSH 61 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHH--H---H-------HTTTCCSCSEECSSSCCEESSHHH
T ss_pred CCCEECCCCCcccCCHHHHH--H---H-------HHHcCCCcCeeCCCCCCccCCHHH
Confidence 45799999999998653211 0 0 011112345899999999976443
No 144
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=49.53 E-value=14 Score=29.52 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=12.1
Q ss_pred CCccccccccccccCc
Q 009461 35 EGEYHCPVLNKVFTEF 50 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~ 50 (534)
...|.|++|.+.|...
T Consensus 15 ~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCBCSSSCCBCSSH
T ss_pred CcCeECCCCCCccCCH
Confidence 4468888888888754
No 145
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.94 E-value=4 Score=33.58 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=12.5
Q ss_pred cchhhhhcC------CCCCCCCc---cCCCCcee
Q 009461 3 ITPYIRKYG------KHPVTGTP---LKLEDLIP 27 (534)
Q Consensus 3 i~p~i~k~~------~~Pvtg~p---l~lKDLi~ 27 (534)
|..||..++ +||+||.+ |...+|++
T Consensus 35 I~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 35 IVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp HHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred HHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 455665541 45555554 44444443
No 146
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=48.48 E-value=13 Score=31.13 Aligned_cols=16 Identities=13% Similarity=0.055 Sum_probs=11.3
Q ss_pred cCCcccCCCCcCCCCC
Q 009461 75 TKNWKELLTDEPFTKE 90 (534)
Q Consensus 75 ~k~~~clv~~~~f~~~ 90 (534)
.+.+.|.+|++.|...
T Consensus 98 ~~~~~C~~C~k~f~~~ 113 (129)
T 2wbt_A 98 EHTKVCPVCKKEFTST 113 (129)
T ss_dssp CCCCBCTTTCCBCSSH
T ss_pred CCCCCCCCCCcccCCH
Confidence 3457888888888653
No 147
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.10 E-value=20 Score=27.91 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=20.2
Q ss_pred CCCceeEEeecCCCCccccccccccccCc
Q 009461 22 LEDLIPLTFHKNAEGEYHCPVLNKVFTEF 50 (534)
Q Consensus 22 lKDLi~l~f~~n~~~~~~CPVt~k~ft~~ 50 (534)
+++-+...|.......|.|++|.+.|...
T Consensus 10 ~~~~~~c~~~~~~~~~~~C~~C~k~f~~~ 38 (95)
T 2ej4_A 10 IKQELSCKWIDEAQLSRPKKSCDRTFSTM 38 (95)
T ss_dssp CCCCCCCCCCCSSCSSSSCCCCCCCCSSH
T ss_pred CCCCceeEeecCCcCCCcccccccccCCH
Confidence 44444555655555578899999999865
No 148
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=46.89 E-value=11 Score=28.62 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=27.9
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhc-cCCcccCCCCcCCCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK-TKNWKELLTDEPFTKED 91 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k-~k~~~clv~~~~f~~~D 91 (534)
..|.|++|.+.|.....+. .=+...-.. .+.+.|.+|+..|...+
T Consensus 14 k~~~C~~C~k~f~~~~~L~-----------~H~~~~h~~~~~~~~C~~C~~~f~~~~ 59 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMK-----------MHILQKHTENVAKFHCPHCDTVIARKS 59 (77)
T ss_dssp CSEECTTTCCEESCHHHHH-----------HHHHHHSSSSCSSEECSSSSCEESSHH
T ss_pred CCeECCCcCchhCCHHHHH-----------HHHHHhcCCCCCccCCCCCCCccCCHH
Confidence 4699999999998653211 000101111 24689999999997644
No 149
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=45.10 E-value=14 Score=29.73 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=25.1
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
..|.|++|.+.|.....+.. | +..-.+.+.|.+|+..|....
T Consensus 15 ~~~~C~~C~~~f~~~~~l~~-----H---------~~~H~~~~~C~~C~~~f~~~~ 56 (107)
T 1wjp_A 15 EVYQCRLCNAKLSSLLEQGS-----H---------ERLCRNAAVCPYCSLRFFSPE 56 (107)
T ss_dssp CCCBCTTTCCBCSSHHHHHH-----H---------HHHHHHSBCCTTTCCCBSSHH
T ss_pred cCeECCCCCCccCCHHHHHH-----H---------HHHCCCCccCCCCCCccCCHH
Confidence 46999999999986532110 0 001123467888888776533
No 150
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=43.59 E-value=14 Score=38.53 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=33.7
Q ss_pred cCCCC-ccccccccccccCceeEEEEe--cCCeeecHHHHHHHh--------hccCCcccCCCCc
Q 009461 32 KNAEG-EYHCPVLNKVFTEFTHIVAVK--TTGNVFCFEAIKELN--------IKTKNWKELLTDE 85 (534)
Q Consensus 32 ~n~~~-~~~CPVt~k~ft~~t~iv~ik--~cG~V~s~~~v~~l~--------~k~k~~~clv~~~ 85 (534)
.+++| +-+|-+|...- .++.=. .|..+||.+||+.+. .....|.|.+|+-
T Consensus 87 ~D~DG~~~yCr~C~~Gg----~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 87 YDDDGYQSYCSICCSGE----TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSSSSBCSCTTTCCCS----SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cCCCCCcccceEcCCCC----eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 33444 45688887532 233333 799999999998864 2235799999973
No 151
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=42.41 E-value=10 Score=32.59 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=28.0
Q ss_pred ccccccccc-ccCceeEEEEecCCeeecHHHHHHHhhcc-CCcccCCCCcCCC
Q 009461 38 YHCPVLNKV-FTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPFT 88 (534)
Q Consensus 38 ~~CPVt~k~-ft~~t~iv~ik~cG~V~s~~~v~~l~~k~-k~~~clv~~~~f~ 88 (534)
..||+|+.. +...+.-+.+.-.|+.+. +.. ..|.|..||+.+-
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~--------v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTV--------LKGIHGLYCVHCEESIM 47 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEE--------EEEEEEEEESSSSCEEC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEE--------ECCCceeECCCCCCEee
Confidence 479999875 544444444455677666 333 4579999998654
No 152
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=42.27 E-value=8.6 Score=35.51 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=7.0
Q ss_pred ccCCCCcC
Q 009461 79 KELLTDEP 86 (534)
Q Consensus 79 ~clv~~~~ 86 (534)
.||+|+.+
T Consensus 155 ~CP~Cg~~ 162 (170)
T 3pwf_A 155 YCPVCGAP 162 (170)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 89999965
No 153
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=42.07 E-value=28 Score=31.95 Aligned_cols=50 Identities=18% Similarity=0.420 Sum_probs=33.8
Q ss_pred ecCCCC-ccccccccccccCceeEEEEe--cCCeeecHHHHHHHh--------hccCCcccCCCC
Q 009461 31 HKNAEG-EYHCPVLNKVFTEFTHIVAVK--TTGNVFCFEAIKELN--------IKTKNWKELLTD 84 (534)
Q Consensus 31 ~~n~~~-~~~CPVt~k~ft~~t~iv~ik--~cG~V~s~~~v~~l~--------~k~k~~~clv~~ 84 (534)
..+++| +-+|-+|... ..++.=. .|-.+||.+||+.+. +....|.|.+|+
T Consensus 72 ~~DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 72 QYDDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp CBCTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred ccCCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 344454 4568888853 2333333 589999999998863 234679999997
No 154
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=40.99 E-value=14 Score=28.84 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=9.2
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (95)
T 2yt9_A 6 SGVACEICGKIFRDV 20 (95)
T ss_dssp SCEECSSSCCEESSS
T ss_pred CCeECCCCCCccCCh
Confidence 346677776666543
No 155
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=47.04 E-value=5.7 Score=23.17 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=11.2
Q ss_pred ccccccccccccCcee
Q 009461 37 EYHCPVLNKVFTEFTH 52 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~ 52 (534)
.|.|++|.+.|.....
T Consensus 2 p~~C~~C~k~f~~~~~ 17 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQ 17 (26)
Confidence 3678888888876543
No 156
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=40.56 E-value=21 Score=32.82 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=39.8
Q ss_pred ccccccccccccC-ceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC-cEEe
Q 009461 37 EYHCPVLNKVFTE-FTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED-LITI 95 (534)
Q Consensus 37 ~~~CPVt~k~ft~-~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D-iI~L 95 (534)
-|.|-.|.+.|.. ...+ +. ..|.+||..++.++.-.. -+|..|++++...+ +|..
T Consensus 32 CF~C~~C~~~L~~~g~~~-~~-~~g~~yC~~cy~~~~~~~--~~C~~C~~~I~~~e~~i~a 88 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNS--GACSACGQSIPASELVMRA 88 (188)
T ss_dssp GCBCTTTCCBHHHHCSEE-EE-ETTEEECHHHHHHHHSCC--EECTTTCCEECTTSEEEEE
T ss_pred CcccCCCCcccccCCceE-EE-eCCccccccccccccccC--CccccCCCccccCcEEEEc
Confidence 5889999999986 2233 33 459999999999865322 16999999998655 4443
No 157
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=40.53 E-value=39 Score=30.36 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=39.8
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
.-|.|-.|.+.|.+.. + . .-|.+||..++.++.. -+|..|++++...++|
T Consensus 32 ~CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~~f~----~~C~~C~~~I~~~~~v 81 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERC-F--S-RGESVYCKDDFFKRFG----TKCAACQLGIPPTQVV 81 (169)
T ss_dssp TTSBCTTTCCBCCSCC-E--E-SSSCEECHHHHHHHHS----CBCTTTCCBCCTTSEE
T ss_pred ccCccCCCCCcCCCCC-c--c-cCCeeeeccccccccc----ccccccccccCCCcEE
Confidence 3588999999999864 3 3 4699999999988653 2799999999876655
No 158
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=39.78 E-value=13 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=27.3
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED 91 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D 91 (534)
.|.|++|.+.|.....+. + | .+.-...+.+.|.+|+..|...+
T Consensus 3 ~~~C~~C~k~f~~~~~L~--~---H-------~~~H~~~~~~~C~~C~k~f~~~~ 45 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLT--T---H-------IRTHTGEKPFACDICGRKFARSD 45 (88)
T ss_dssp CEECTTTCCEESCHHHHH--H---H-------HHHHHCCCCEECTTTCCEESSHH
T ss_pred CCcCCCCCCccCCHHHHH--H---H-------HHHcCCCCCccCCCCCCccCCHH
Confidence 589999999998653211 0 0 11112345589999999887543
No 159
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=39.25 E-value=9.5 Score=26.21 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=13.2
Q ss_pred CccccccccccccCce
Q 009461 36 GEYHCPVLNKVFTEFT 51 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t 51 (534)
..|.|++|.+.|....
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (48)
T 2epr_A 11 KQVACEICGKIFRDVY 26 (48)
T ss_dssp CSEEETTTTEEESSHH
T ss_pred cCeeCCCCCcccCCHH
Confidence 4699999999998753
No 160
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.99 E-value=23 Score=28.83 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=10.8
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (124)
T 2dlq_A 6 SGVECPTCHKKFLSK 20 (124)
T ss_dssp SSCCCTTTCCCCSSH
T ss_pred CCCCCCCCCCcCCCH
Confidence 457788888887654
No 161
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.91 E-value=24 Score=27.50 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=12.1
Q ss_pred CCccccccccccccCc
Q 009461 35 EGEYHCPVLNKVFTEF 50 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~ 50 (534)
+..|.|++|.+.|...
T Consensus 6 ~~~~~C~~C~~~f~~~ 21 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSRK 21 (96)
T ss_dssp CCCCCBTTTTBCCCCH
T ss_pred CcCeECCCCCCccCCH
Confidence 4568899988888754
No 162
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.71 E-value=9.1 Score=33.57 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=23.8
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
-.|.+|.+.|+-..+---=|.||.|||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 479999999984432222378999999887654
No 163
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=37.45 E-value=67 Score=27.22 Aligned_cols=85 Identities=14% Similarity=0.310 Sum_probs=51.9
Q ss_pred hhhhcCC---CCCCCCccCCCCce-eE---EeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCc
Q 009461 6 YIRKYGK---HPVTGTPLKLEDLI-PL---TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNW 78 (534)
Q Consensus 6 ~i~k~~~---~Pvtg~pl~lKDLi-~l---~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~ 78 (534)
|.+.++. ++.=++++...+.+ .. .|+. .-|.|-+|.+.|.....++ ++ .|.+||..++.++..+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~---~CF~C~~C~~~L~~g~~f~-~~-~g~~yC~~cy~~~~~~---- 71 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHL---ECFKCAACQKHFSVGDRYL-LI-NSDIVCEQDIYEWTKI---- 71 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCT---TTCBCTTTCCBCCTTCEEE-EC-SSSEEEGGGHHHHHHH----
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCccccc---ccCccccCCCCCCCCCcEE-ee-CCEEEcHHHhHHHhcc----
Confidence 4566664 66666666654322 22 2443 3588999999995444443 33 6999999999886532
Q ss_pred ccCCCCcCCCCCCcEEecCCC
Q 009461 79 KELLTDEPFTKEDLITIQNPN 99 (534)
Q Consensus 79 ~clv~~~~f~~~DiI~LqDP~ 99 (534)
+|-.|+-.-...|...+-.|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~ 92 (123)
T 2l3k_A 72 NGGSGGSGGSGGDVMVVGEPT 92 (123)
T ss_dssp HTCCCCCCSCCSCCEECCCCC
T ss_pred ccCCCCCCCccCCCcccCCCc
Confidence 344455444555666555554
No 164
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=37.44 E-value=9.1 Score=35.85 Aligned_cols=8 Identities=13% Similarity=-0.056 Sum_probs=7.1
Q ss_pred ccCCCCcC
Q 009461 79 KELLTDEP 86 (534)
Q Consensus 79 ~clv~~~~ 86 (534)
.||+|+.+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 89999985
No 165
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.84 E-value=7.4 Score=23.20 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=11.9
Q ss_pred ccccccccccccCcee
Q 009461 37 EYHCPVLNKVFTEFTH 52 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~ 52 (534)
.|.|++|.+.|.....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASS 17 (29)
Confidence 4778888888876544
No 166
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=36.57 E-value=14 Score=29.31 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=25.9
Q ss_pred cccccccccc-ccCceeEEEEecCCeeecHHHHHHHhhcc-CCcccCCCCcCC
Q 009461 37 EYHCPVLNKV-FTEFTHIVAVKTTGNVFCFEAIKELNIKT-KNWKELLTDEPF 87 (534)
Q Consensus 37 ~~~CPVt~k~-ft~~t~iv~ik~cG~V~s~~~v~~l~~k~-k~~~clv~~~~f 87 (534)
...||+|+.. +...+.-+-+.--|+.+. ++. .-|.|+.||+.+
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~--------I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTV--------LKGIHGLYCVHCEESI 46 (78)
T ss_dssp -CBCTTTSSSBEEEEEEEEEEEETTEEEE--------EEEEEEEEETTTCCEE
T ss_pred ceECCCCCCCeeEeEEEEEEEEECCEEEE--------EcCceeEECCCCCCEE
Confidence 3579999864 655444333333466654 322 247999999855
No 167
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=36.22 E-value=15 Score=27.54 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=8.3
Q ss_pred CCcccCCCCcCCCC
Q 009461 76 KNWKELLTDEPFTK 89 (534)
Q Consensus 76 k~~~clv~~~~f~~ 89 (534)
+.+.|.+|+..|..
T Consensus 56 ~~~~C~~C~~~f~~ 69 (82)
T 2kmk_A 56 KPHKCQVCGKAFSQ 69 (82)
T ss_dssp CCEECTTTSCEESS
T ss_pred CCCcCCCcchhhCC
Confidence 34566666666653
No 168
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.75 E-value=30 Score=28.04 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=38.9
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCC-cEEe
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKED-LITI 95 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~D-iI~L 95 (534)
.-|.|-.|.+.|.+.. + + ..-|.+|+..++.++.. -+|..|++++...| +|..
T Consensus 32 ~CF~C~~C~~~L~~~~-~-~-~~~g~~yC~~cy~~~~~----~~C~~C~~~I~~~~~~~~a 85 (101)
T 2cup_A 32 TCFRCAKCLHPLANET-F-V-AKDNKILCNKCTTREDS----PKCKGCFKAIVAGDQNVEY 85 (101)
T ss_dssp TTCCCSSSCCCTTSSC-C-E-EETTEEECHHHHTTCCC----CBCSSSCCBCCSSSCEEES
T ss_pred cCCcccccCCCCCcCe-e-E-CcCCEEEChhHhhhhcC----CccccCCCccccCCeEEEe
Confidence 3588999999997543 2 2 34699999999987432 27999999998554 5543
No 169
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=34.66 E-value=18 Score=27.79 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=12.1
Q ss_pred cCCcccCCCCcCCCCC
Q 009461 75 TKNWKELLTDEPFTKE 90 (534)
Q Consensus 75 ~k~~~clv~~~~f~~~ 90 (534)
.+.+.|.+|+..|...
T Consensus 60 ~~~~~C~~C~~~f~~~ 75 (90)
T 1a1h_A 60 EKPFACDICGRKFARS 75 (90)
T ss_dssp CCCEECTTTCCEESSH
T ss_pred CCCccCCCCCchhCCH
Confidence 3457899999988754
No 170
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.34 E-value=14 Score=21.58 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=9.7
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|++|.+.|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 1ard_A 2 SFVCEVCTRAFARQ 15 (29)
T ss_dssp CCBCTTTCCBCSSH
T ss_pred CeECCCCCcccCCH
Confidence 36777777777654
No 171
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=34.32 E-value=41 Score=30.63 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=38.2
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCCCCCcE
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFTKEDLI 93 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~~~DiI 93 (534)
-|.|-.|.+.|.+.. + . .-|.+||..++.++.. -+|..|++++...+++
T Consensus 87 CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~~f~----~kC~~C~~~I~~~~~v 135 (182)
T 2jtn_A 87 CLKCSDCHVPLAERC-F--S-RGESVYCKDDFFKRFG----TKCAACQLGIPPTQVV 135 (182)
T ss_dssp TTSCTTTCCCCSSCC-E--E-ETTEEECHHHHHHTTS----CCCTTTCCCCCSSCCC
T ss_pred cCccCCCCCccCCCc-e--e-ECCEeeecCccccccc----cccccCCCccCCCceE
Confidence 578999999998764 3 3 4699999999988542 2799999998876543
No 172
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.96 E-value=13 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=10.1
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|++|.+.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 2m0f_A 2 PLKCRECGKQFTTS 15 (29)
T ss_dssp CEECTTTSCEESCH
T ss_pred CccCCCCCCccCCh
Confidence 47788888877654
No 173
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.70 E-value=23 Score=28.52 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=9.4
Q ss_pred CCcccCCCCcCCCC
Q 009461 76 KNWKELLTDEPFTK 89 (534)
Q Consensus 76 k~~~clv~~~~f~~ 89 (534)
+.+.|.+|+..|..
T Consensus 64 ~~~~C~~C~~~f~~ 77 (110)
T 2csh_A 64 KPYECNICAKRFMW 77 (110)
T ss_dssp CCEECSSSCCEESC
T ss_pred CCeeCCCCcchhcC
Confidence 34677777777754
No 174
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.34 E-value=9.6 Score=36.28 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=23.4
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
-.|+.|.+.|+-..+=--=|.||.|||..|...
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 489999999974321112278999999877654
No 175
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=39.30 E-value=9.1 Score=22.73 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=12.5
Q ss_pred ccccccccccccCceeE
Q 009461 37 EYHCPVLNKVFTEFTHI 53 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~i 53 (534)
.|.|+.|.+.|.....+
T Consensus 3 ~~~C~~C~k~f~~~~~l 19 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGAL 19 (30)
Confidence 47888888888765443
No 176
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=32.96 E-value=15 Score=21.18 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=8.0
Q ss_pred cccccccccccC
Q 009461 38 YHCPVLNKVFTE 49 (534)
Q Consensus 38 ~~CPVt~k~ft~ 49 (534)
|.|++|.+.|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 567777777664
No 177
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.95 E-value=26 Score=23.30 Aligned_cols=15 Identities=33% Similarity=0.611 Sum_probs=12.4
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK 23 (45)
T ss_dssp CSSEETTTTEECSCH
T ss_pred CCCcCCCCCcccCCH
Confidence 469999999999864
No 178
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=32.86 E-value=14 Score=21.50 Aligned_cols=14 Identities=36% Similarity=0.728 Sum_probs=9.1
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|+.|.+.|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV 15 (29)
T ss_dssp CCCCSSCCCCCCTT
T ss_pred CCcCCCCCcccCCH
Confidence 36677777777654
No 179
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.27 E-value=28 Score=26.33 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=27.1
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhc---cCCcccCCCCcCCCCCC
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK---TKNWKELLTDEPFTKED 91 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k---~k~~~clv~~~~f~~~D 91 (534)
..|.|++|.+.|.....+. .=+...... .+.+.|.+|+..|...+
T Consensus 14 k~~~C~~C~~~f~~~~~l~-----------~H~~~~~~~~~~~~~~~C~~C~~~f~~~~ 61 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLD-----------MHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61 (86)
T ss_dssp CCEECSSSSCEESSHHHHH-----------HHHHHTTCSSCCCCCEECSSSCCEESCHH
T ss_pred CCCcCCCCCCccCCHHHHH-----------HHHHHhcCCcCCCcceECCCCCChhCCHH
Confidence 4699999999997653211 000010111 14589999999997544
No 180
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=30.86 E-value=61 Score=29.69 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=36.0
Q ss_pred CCCCCCccCCCCceeE---EeecCCCCccccccccccccCceeEEEEecCCeeecHHHHHHHhh
Q 009461 13 HPVTGTPLKLEDLIPL---TFHKNAEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNI 73 (534)
Q Consensus 13 ~Pvtg~pl~lKDLi~l---~f~~n~~~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~ 73 (534)
+..=++++...++|.. .|+. .-|.|-.|.+.|.+.. ++.+ -|.+||..++.++.-
T Consensus 10 C~~C~~~I~~~~~v~a~g~~wH~---~CF~C~~C~~~L~~~~--~~~~-~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 10 CGVCQKAVYFAEEVQCEGSSFHK---SCFLCMVCKKNLDSTT--VAVH-GDEIYCKSCYGKKYG 67 (192)
T ss_dssp CTTTCCEECSSCCEEETTEEECT---TTCBCTTTCCBCCSSS--EEEE-TTEEEEHHHHHHHHS
T ss_pred CccCCCeecceeEEEeCCceecC---CCCcCcccCCcCCCCe--eEec-CCEeeChhhhHhhcC
Confidence 3444555554444322 2332 3588999999999874 2333 699999999998753
No 181
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.40 E-value=18 Score=21.14 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=9.9
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|++|.+.|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 3 PYSCSVCGKRFSLK 16 (28)
T ss_dssp SEECSSSCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 47788888777653
No 182
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=30.17 E-value=16 Score=21.41 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=9.8
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|+.|.+.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 1rik_A 2 KFACPECPKRFMRS 15 (29)
T ss_dssp CEECSSSSCEESCS
T ss_pred CccCCCCCchhCCH
Confidence 36788888777654
No 183
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=30.06 E-value=18 Score=22.86 Aligned_cols=15 Identities=20% Similarity=0.653 Sum_probs=12.3
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSBCCTTTCCCBSSH
T ss_pred CCccCCCCCcccCcH
Confidence 368999999999864
No 184
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.73 E-value=31 Score=28.73 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=28.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHh---hccCCcccCCCCcCCCCCCc
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELN---IKTKNWKELLTDEPFTKEDL 92 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~---~k~k~~~clv~~~~f~~~Di 92 (534)
..|.|+.|.+.|+....+.. =+...- ...+.+.|.+|++.|....-
T Consensus 17 kpy~C~~Cgk~F~~~~~L~~-----------H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~ 65 (102)
T 2ghf_A 17 GGYECKYCTFQTPDLNMFTF-----------HVDSEHPNVVLNSSYVCVECNFLTKRYDA 65 (102)
T ss_dssp SSEECSSCSCEESCHHHHHH-----------HHHHHCSSCCCSCCEEETTTTEEESSTHH
T ss_pred cCcCCCCCCCccCCHHHHHH-----------HHHhhCCCCCCCCCcCCCCCCcccCCHHH
Confidence 36999999999986532110 000001 12345789999999986544
No 185
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.64 E-value=19 Score=20.95 Aligned_cols=14 Identities=14% Similarity=0.522 Sum_probs=9.9
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|+.|.+.|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvh_A 3 PFSCSLCPQRSRDF 16 (27)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCcChhhCCH
Confidence 47788888777654
No 186
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.62 E-value=33 Score=25.63 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=10.3
Q ss_pred cCCcccCCCCcCCC
Q 009461 75 TKNWKELLTDEPFT 88 (534)
Q Consensus 75 ~k~~~clv~~~~f~ 88 (534)
.+.+.|.+|++.|.
T Consensus 66 ~~~~~C~~C~k~F~ 79 (79)
T 2dlk_A 66 TRDYICEFSGPSSG 79 (79)
T ss_dssp SCCCSCCSSSCCCC
T ss_pred CCCeeCCCCCCCCC
Confidence 35578888888773
No 187
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.53 E-value=17 Score=29.84 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=23.8
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
-.|.+|.+.|+-..+---=|.||.|||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 479999999885432223478999999877653
No 188
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.19 E-value=19 Score=22.45 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=12.4
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 8 ~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 8 KTHLCDMCGKKFKSK 22 (36)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred CCeecCcCCCCcCch
Confidence 468999999999864
No 189
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.11 E-value=19 Score=21.00 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=9.5
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|+.|.+.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1klr_A 2 TYQCQYCEFRSADS 15 (30)
T ss_dssp CCCCSSSSCCCSCS
T ss_pred CccCCCCCCccCCH
Confidence 36777777777654
No 190
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.10 E-value=15 Score=29.69 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=24.4
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
.-.|.+|.+.|+-..+---=|.||.|||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3579999999985432222368999999887654
No 191
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=29.05 E-value=12 Score=38.79 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
.-.|+.|...|+-..+--.-+.||.|||..|-..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp ----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 3579999999975433233468999999999864
No 192
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.79 E-value=17 Score=21.30 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=10.0
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|++|.+.|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvg_A 3 PYRCPLCRAGCPSL 16 (27)
T ss_dssp TEEETTTTEEESCH
T ss_pred CcCCCCCCcccCCH
Confidence 47788888877653
No 193
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.67 E-value=14 Score=35.43 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=23.6
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
.|..|.+.|+-..+=---|.||.|||..|-..
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 79999999985432222378999999887654
No 194
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.59 E-value=17 Score=28.63 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=22.5
Q ss_pred ccccccccccCceeEEEEecCCeeecHHHHH
Q 009461 39 HCPVLNKVFTEFTHIVAVKTTGNVFCFEAIK 69 (534)
Q Consensus 39 ~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~ 69 (534)
.|.+|.+.|+-..+---=|.||.|||..|..
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccC
Confidence 7999999998543222236799999987764
No 195
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=28.54 E-value=23 Score=25.85 Aligned_cols=27 Identities=7% Similarity=0.222 Sum_probs=19.0
Q ss_pred cchhhhhcCCCCCCCCccCCCCceeEE
Q 009461 3 ITPYIRKYGKHPVTGTPLKLEDLIPLT 29 (534)
Q Consensus 3 i~p~i~k~~~~Pvtg~pl~lKDLi~l~ 29 (534)
|..|++...++|+-..++...++++|-
T Consensus 37 i~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 37 LRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp HHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred HHHHHHcCCCCCCCCccCCccceeeee
Confidence 346777777777777777777777664
No 196
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=28.46 E-value=25 Score=27.10 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=7.8
Q ss_pred ccccccccccccC
Q 009461 37 EYHCPVLNKVFTE 49 (534)
Q Consensus 37 ~~~CPVt~k~ft~ 49 (534)
...||+|+..++.
T Consensus 43 ~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 43 HKTCPKSQETLLH 55 (78)
T ss_dssp CCBCTTTCCBCSS
T ss_pred cCCCCCCcCCCCh
Confidence 3456666666654
No 197
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.15 E-value=17 Score=22.82 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.5
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2els_A 8 KIFTCEYCNKVFKFK 22 (36)
T ss_dssp CCEECTTTCCEESSH
T ss_pred CCEECCCCCceeCCH
Confidence 468999999999864
No 198
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=28.07 E-value=20 Score=22.43 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=9.7
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|++|.+.|...
T Consensus 2 p~~C~~C~k~F~~~ 15 (33)
T 1rim_A 2 KFACPECPKRFMRS 15 (33)
T ss_dssp CCCCSSSCCCCSSH
T ss_pred cccCCCCCchhCCH
Confidence 36777777777654
No 199
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.03 E-value=17 Score=29.95 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=23.7
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
-.|.+|.+.|+-..+----+.||.|||..|...
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 469999999985433223478999999877543
No 200
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.93 E-value=16 Score=29.59 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
.-.|.+|.+.|+-..+---=|.||.|||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3579999999985432222378999999887654
No 201
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.74 E-value=21 Score=20.86 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=10.2
Q ss_pred ccccccccccccCc
Q 009461 37 EYHCPVLNKVFTEF 50 (534)
Q Consensus 37 ~~~CPVt~k~ft~~ 50 (534)
.|.|++|.+.|...
T Consensus 3 ~~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 3 PYQCDYCGRSFSDP 16 (30)
T ss_dssp CEECTTTCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 47788888877654
No 202
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.56 E-value=20 Score=22.17 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.2
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 6 k~~~C~~C~k~f~~~ 20 (35)
T 2elx_A 6 SGYVCALCLKKFVSS 20 (35)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCCCcchhCCH
Confidence 358999999999864
No 203
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=26.50 E-value=24 Score=20.76 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=8.7
Q ss_pred cccccccccccCc
Q 009461 38 YHCPVLNKVFTEF 50 (534)
Q Consensus 38 ~~CPVt~k~ft~~ 50 (534)
|.|+.|.+.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 6677777777654
No 204
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.47 E-value=21 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.4
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elt_A 8 KPYKCPQCSYASAIK 22 (36)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CCCCCCCCCcccCCH
Confidence 468999999999864
No 205
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=25.23 E-value=20 Score=26.56 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCcccccc--ccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCC--CCcCCCCCC
Q 009461 35 EGEYHCPV--LNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELL--TDEPFTKED 91 (534)
Q Consensus 35 ~~~~~CPV--t~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv--~~~~f~~~D 91 (534)
...|.|++ |.+.|.....+. .=.+.-...+.+.|.+ |++.|...+
T Consensus 15 ~~~~~C~~~~C~k~f~~~~~L~------------~H~~~H~~~~~~~C~~~~C~k~f~~~~ 63 (72)
T 2epa_A 15 IRSHICSHPGCGKTYFKSSHLK------------AHTRTHTGEKPFSCSWKGCERRFARSD 63 (72)
T ss_dssp CCCEECSSTTTCCEESSHHHHH------------HHHHHHSSSCSEECCCTTCCCEESSHH
T ss_pred cCceeCCCCCCccccCCHHHHH------------HHHHhcCCCCCccCCCCCCCcccCCHH
Confidence 34699988 999887542211 0011122345689975 999997644
No 206
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.73 E-value=18 Score=29.17 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=23.2
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
-.|..|.+.|+-..+=--=|.||.|||..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 479999999875431112378999999887553
No 207
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.65 E-value=20 Score=26.35 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=25.7
Q ss_pred ccccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccC-CCCcCCCCCC
Q 009461 37 EYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKEL-LTDEPFTKED 91 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~cl-v~~~~f~~~D 91 (534)
.|.|+.|.+.|. ...+. + | .+. ...+.+.|. .|++.|....
T Consensus 10 ~~~C~~C~k~f~-~~~L~--~---H-------~~~-~~~~p~~C~~~C~k~f~~~~ 51 (66)
T 2eod_A 10 TQPCTYCTKEFV-FDTIQ--S---H-------QYQ-CPRLPVACPNQCGVGTVARE 51 (66)
T ss_dssp EEECSSSCCEEE-HHHHH--H---H-------HHH-CSSSEEECTTCCSCCEEETT
T ss_pred CeeccccCCccC-HHHHH--H---H-------HHH-cCCcCccCCcccCcccccHH
Confidence 588999999887 53311 0 0 111 233457899 9999986543
No 208
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.95 E-value=23 Score=22.18 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=12.3
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
-.|.|++|.+.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elq_A 8 KPFKCSLCEYATRSK 22 (36)
T ss_dssp CSEECSSSSCEESCH
T ss_pred CCccCCCCCchhCCH
Confidence 368999999999864
No 209
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.94 E-value=23 Score=22.32 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=12.3
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elo_A 8 RSYSCPVCEKSFSED 22 (37)
T ss_dssp CCCEETTTTEECSSH
T ss_pred CCcCCCCCCCccCCH
Confidence 468999999999864
No 210
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.92 E-value=24 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.405 Sum_probs=12.3
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 8 RAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCEECSSSSCEECSS
T ss_pred CCeECCCCChhhccC
Confidence 368999999999864
No 211
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.87 E-value=36 Score=25.66 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=13.1
Q ss_pred cCCcccCCCCcCCCCCCcEEe
Q 009461 75 TKNWKELLTDEPFTKEDLITI 95 (534)
Q Consensus 75 ~k~~~clv~~~~f~~~DiI~L 95 (534)
+..|.||+|+.+ +.+...|
T Consensus 34 P~dw~CP~Cg~~--K~~F~~~ 52 (54)
T 4rxn_A 34 PDDWVCPLCGVG--KDEFEEV 52 (54)
T ss_dssp CTTCBCTTTCCB--GGGEEEC
T ss_pred CCCCcCcCCCCc--HHHceEc
Confidence 457999999985 4444443
No 212
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.79 E-value=60 Score=24.89 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=27.3
Q ss_pred CccccccccccccCceeEEEEecCCeeecHHHHHHHhhc
Q 009461 36 GEYHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIK 74 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k 74 (534)
.-|.|-.|.+.|.....++ ++ -|.+||..|.+++...
T Consensus 30 ~CF~C~~C~~~L~~~~~f~-~~-~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMY-LQ-GSSIWHPACRQAARTE 66 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCE-EE-TTEEECTTHHHHTSSS
T ss_pred CcCEeCCCCCCCCCCCeeE-ee-CCEEEChHHChHhhcc
Confidence 3588999999998443333 33 6999999999986543
No 213
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.53 E-value=30 Score=27.16 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=12.7
Q ss_pred ccCCCCcCCCCCCcEEecCCC
Q 009461 79 KELLTDEPFTKEDLITIQNPN 99 (534)
Q Consensus 79 ~clv~~~~f~~~DiI~LqDP~ 99 (534)
.|+.|+..|--.|=|++.=|.
T Consensus 30 vC~~c~~~YPI~dGIPvmL~~ 50 (67)
T 2jny_A 30 VNERLNLAYRIDDGIPVLLID 50 (67)
T ss_dssp EETTTTEEEEEETTEECCCSS
T ss_pred EcCCCCccccCCCCEeeeChh
Confidence 456667777666666655444
No 214
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.42 E-value=24 Score=22.08 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.2
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elv_A 8 LLYDCHICERKFKNE 22 (36)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCCccCCH
Confidence 368999999999864
No 215
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.24 E-value=20 Score=31.30 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=23.9
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHH
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKE 70 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~ 70 (534)
-.|..|...|+-..+----|.||.|||..|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 479999998875432222478999999988654
No 216
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.23 E-value=10 Score=32.09 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=24.8
Q ss_pred cccccccccccCceeEEEEecCCeeecHHHHHHHhhccCCcccCCCCcCCC
Q 009461 38 YHCPVLNKVFTEFTHIVAVKTTGNVFCFEAIKELNIKTKNWKELLTDEPFT 88 (534)
Q Consensus 38 ~~CPVt~k~ft~~t~iv~ik~cG~V~s~~~v~~l~~k~k~~~clv~~~~f~ 88 (534)
.+||+|..++.- ..|..+|..|-+.+.+.+ .||-|++++.
T Consensus 33 ~~CP~Cq~eL~~--------~g~~~hC~~C~~~f~~~a---~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ--------DNGHARCRSCGEFIEMKA---LCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE--------ETTEEEETTTCCEEEEEE---ECTTTCSBCE
T ss_pred ccCccCCCccee--------cCCEEECccccchhhccc---cCcchhhHHH
Confidence 579999888752 334444555555444433 6888887764
No 217
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=22.71 E-value=28 Score=21.84 Aligned_cols=15 Identities=33% Similarity=0.835 Sum_probs=13.2
Q ss_pred HHHHHHHhccccCCc
Q 009461 311 ENFITLCERGYYNGV 325 (534)
Q Consensus 311 ~NF~~L~~~g~Y~gt 325 (534)
.||..-.+.|||+|.
T Consensus 4 knfwsslrkgfydge 18 (26)
T 2khf_A 4 KNFWSSLRKGFYDGE 18 (26)
T ss_dssp HHHHHHHHHHHTTTH
T ss_pred HHHHHHHHhhcccch
Confidence 589999999999984
No 218
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=22.37 E-value=32 Score=25.75 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=17.5
Q ss_pred cchhhhhcCCCCCCCCccCCCCceeE
Q 009461 3 ITPYIRKYGKHPVTGTPLKLEDLIPL 28 (534)
Q Consensus 3 i~p~i~k~~~~Pvtg~pl~lKDLi~l 28 (534)
|..|++...++|+-..++..++|.++
T Consensus 44 i~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 44 LRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp HHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred HHHHHHcCCCCCCCCCccChhheeec
Confidence 34677776677777777777766655
No 219
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.16 E-value=27 Score=31.51 Aligned_cols=11 Identities=0% Similarity=-0.411 Sum_probs=8.5
Q ss_pred ccCCCCcCCCC
Q 009461 79 KELLTDEPFTK 89 (534)
Q Consensus 79 ~clv~~~~f~~ 89 (534)
.||.||.++.+
T Consensus 150 ~Cp~CG~~~~~ 160 (165)
T 2lcq_A 150 VCPDCGSKVKL 160 (165)
T ss_dssp BCTTTCCBEEE
T ss_pred cCCCCCCccee
Confidence 79999987543
No 220
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=22.16 E-value=20 Score=22.14 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=7.6
Q ss_pred cccccccccccC
Q 009461 38 YHCPVLNKVFTE 49 (534)
Q Consensus 38 ~~CPVt~k~ft~ 49 (534)
|.|++|.+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (32)
T 2kfq_A 3 FACPACPKRFMR 14 (32)
T ss_dssp SSSSSSCTTHHH
T ss_pred CCCCCCCcccCC
Confidence 567776666654
No 221
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=21.88 E-value=14 Score=38.41 Aligned_cols=54 Identities=6% Similarity=-0.095 Sum_probs=35.8
Q ss_pred CCccccccccccccCceeEE----EEecCCeeecHHHHHHHhhc-cC--------CcccCCCCcCCC
Q 009461 35 EGEYHCPVLNKVFTEFTHIV----AVKTTGNVFCFEAIKELNIK-TK--------NWKELLTDEPFT 88 (534)
Q Consensus 35 ~~~~~CPVt~k~ft~~t~iv----~ik~cG~V~s~~~v~~l~~k-~k--------~~~clv~~~~f~ 88 (534)
++.--|+||+-.|.+...+- -.-+|||-|-..|+.+--.. .. ...||.|..+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45567999999998733221 12379999999999773221 10 126999987654
No 222
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.88 E-value=41 Score=27.99 Aligned_cols=37 Identities=8% Similarity=0.217 Sum_probs=26.1
Q ss_pred ccccccccccccCceeE-------------EEEecCCeeecHHHHHHHhhc
Q 009461 37 EYHCPVLNKVFTEFTHI-------------VAVKTTGNVFCFEAIKELNIK 74 (534)
Q Consensus 37 ~~~CPVt~k~ft~~t~i-------------v~ik~cG~V~s~~~v~~l~~k 74 (534)
.-.|++|++.+.+-.+. -+-++.| ++|..||.+..+.
T Consensus 33 ~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr~rI~~ 82 (89)
T 3j21_d 33 IAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMRKVMKE 82 (89)
T ss_dssp CCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHHHHHHH
T ss_pred CCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHHHHHHH
Confidence 34799999988873321 1234689 9999999987653
No 223
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=21.80 E-value=22 Score=22.30 Aligned_cols=9 Identities=56% Similarity=1.198 Sum_probs=7.1
Q ss_pred ccccccccc
Q 009461 489 GVGKYLKAR 497 (534)
Q Consensus 489 gVgkyl~~~ 497 (534)
|+||||..+
T Consensus 1 gigkylhsa 9 (26)
T 1dum_A 1 GIGKYLHSA 9 (26)
T ss_dssp CCSSTTTTH
T ss_pred ChhHHHHHH
Confidence 789999654
No 224
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.67 E-value=28 Score=21.56 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.9
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 6 k~~~C~~C~k~f~~~ 20 (35)
T 1srk_A 6 RPFVCRICLSAFTTK 20 (35)
T ss_dssp SCEECSSSCCEESSH
T ss_pred cCeeCCCCCcccCCH
Confidence 358899999998764
No 225
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.73 E-value=38 Score=21.87 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.0
Q ss_pred CccccccccccccCc
Q 009461 36 GEYHCPVLNKVFTEF 50 (534)
Q Consensus 36 ~~~~CPVt~k~ft~~ 50 (534)
..|.|++|.+.|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQK 24 (42)
T ss_dssp CSBCCTTTTCCBSSH
T ss_pred CCeeCCCccchhCCH
Confidence 468899999998764
Done!