BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009463
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 150/357 (42%), Gaps = 23/357 (6%)
Query: 164 GVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGK 223
G +Y +G N GQLG + P P +L ++ G++YA G
Sbjct: 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 79
Query: 224 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDA 281
+ G + GT+ V++P L+ES++++F+ + A+ G LS EG VY++ D
Sbjct: 80 GAGGRLG--IGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDG 137
Query: 282 RLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXX 341
+LGH P ++ +L I VV + +Y+
Sbjct: 138 KLGHGNRSPCDRPR-VIESLRGIEVVDVAAGGAHSACVTAAGD---LYTWGKGRYGRLGH 193
Query: 342 XSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECE 401
D+ P+L+E Q + D V +WG G YG LG G +
Sbjct: 194 SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGC 253
Query: 402 SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANV 461
VP + +L + + V G + +++ G VY++G G+ LGH + +V
Sbjct: 254 KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHV 305
Query: 462 LTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVN 518
P+ V L+ ++V+ I+ T S+ H TE G++Y +G D+GQLG N
Sbjct: 306 RRPRQVQGLQ--GKKVIAIA-TGSL----HCVCCTEDGEVYTWGDNDEGQLGDGTTN 355
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 143/343 (41%), Gaps = 16/343 (4%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXX--XXXXXXXXX 206
Q I G AVT+ G +Y+ G + G+LG G TE P + S+
Sbjct: 57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGG 116
Query: 207 XXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 266
+ +S G+VY++G+ G+ +G + P+++ESL+ I VV A G +A +
Sbjct: 117 KHCLALSSEGEVYSWGEAEDGKLGHGNR--SPCDRPRVIESLRGIEVVDVAAGGAHSACV 174
Query: 267 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGM 326
+ G +YT+ G RLGH + ++P L+ L+ VV I
Sbjct: 175 TAAGDLYTWGKGRYGRLGHSDSEDQLKP-KLVEALQGHRVVDIACGSGDAQTLCLTDDDT 233
Query: 327 AVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWG 386
V+S K P I+ L + + G V TWG
Sbjct: 234 -VWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALT--KSGAVYTWG 290
Query: 387 WGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 446
G Y LGHG+++ P+ VQ L K I +ATG +EDG+VY++G + LG
Sbjct: 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG 350
Query: 447 HNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWN 489
DG N + P+LV +L+ V +++ W+
Sbjct: 351 -----DGTTN---AIQRPRLVAALQGKKVNRVACGSAHTLAWS 385
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 141/379 (37%), Gaps = 79/379 (20%)
Query: 152 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 211
AG HS+A+ S +V S+G GQLGHG E+ RP
Sbjct: 11 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAED----RP--------------------- 45
Query: 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG- 270
SP + +L +V G T S+ G
Sbjct: 46 -----------------------------SPTQLSALDGHQIVSVTCGADHTVAYSQSGM 76
Query: 271 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYS 330
VY++ WG+ RLGH + P P+ L I + QI + V S
Sbjct: 77 EVYSWGWGDFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVTMEGE---VQS 132
Query: 331 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 390
D P+ I+ F+ + ++ +DG + WGWGRY
Sbjct: 133 WGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVT--EDGDLYGWGWGRY 190
Query: 391 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAI 450
G LG G+ VP+ V + K VA G T VS G +Y++G + LGH +
Sbjct: 191 GNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 250
Query: 451 ADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 510
D L P + +L N + QIS W HT ALT GKLY +G G
Sbjct: 251 ED--------HLIPHKLEALS--NSFISQISGG----WR-HTMALTSDGKLYGWGWNKFG 295
Query: 511 QLGIELVNNQTERGNPERV 529
Q+G V N ++ +P +V
Sbjct: 296 QVG---VGNNLDQCSPVQV 311
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 11/296 (3%)
Query: 153 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 211
G H++A + G+ VYS+G G+LGHG + + + P PI++L +
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 123
Query: 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 271
++ G+V ++G++ G+ G LV PQ +++ + I + A G TA ++ +G
Sbjct: 124 VTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 272 VYTFSWGNDARLGHHTEPNDVEPHPLLGTL-ENIPVVQIXXXXXXXXXXXXQPSGMAVYS 330
+Y + WG LG + + P + T E + +V A+Y+
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-----ALYT 236
Query: 331 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 390
D P +E L N DG++ WGW ++
Sbjct: 237 YGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 294
Query: 391 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 446
G +G GN + P V+ +D K + V+ G T V+E +V+++G G + LG
Sbjct: 295 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 208
Q G H +AVT +G V S+G N +GQLG G TE+ P+ I++
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 172
Query: 209 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 268
T +++ G +Y +G +G G + +LV P+ V S + A G T +S
Sbjct: 173 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVSY 230
Query: 269 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 309
G +YT+ W +LGH + + PH L L N + QI
Sbjct: 231 SGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQI 270
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 148 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXX 207
S G H+I+V+ G +Y++G + GQLGHG E+ P + +L
Sbjct: 216 SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR 275
Query: 208 XTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 267
TM ++ G++Y +G + FG+ GV SP V + VVQ + G T ++
Sbjct: 276 HTMALTSDGKLYGWGWNKFGQV--GVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT 333
Query: 268 REGRVYTFSWGNDARLG 284
V+ + G + +LG
Sbjct: 334 ERNNVFAWGRGTNGQLG 350
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL 194
Q G H++AVT + V+++G ++GQLG G + + P+ I +L
Sbjct: 321 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 141/379 (37%), Gaps = 79/379 (20%)
Query: 152 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 211
AG HS+A+ S +V S+G GQLGHG E+ RP
Sbjct: 23 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAED----RP--------------------- 57
Query: 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG- 270
SP + +L +V G T S+ G
Sbjct: 58 -----------------------------SPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88
Query: 271 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYS 330
VY++ WG+ RLGH + P P+ L I + QI + V S
Sbjct: 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVTMEGE---VQS 144
Query: 331 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 390
D P+ I+ F+ + ++ +DG + WGWGRY
Sbjct: 145 WGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVT--EDGDLYGWGWGRY 202
Query: 391 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAI 450
G LG G+ VP+ V + K VA G T VS G +Y++G + LGH +
Sbjct: 203 GNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 262
Query: 451 ADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 510
D L P + +L N + QIS W HT ALT GKLY +G G
Sbjct: 263 ED--------HLIPHKLEALS--NSFISQISGG----WR-HTMALTSDGKLYGWGWNKFG 307
Query: 511 QLGIELVNNQTERGNPERV 529
Q+G V N ++ +P +V
Sbjct: 308 QVG---VGNNLDQCSPVQV 323
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 11/296 (3%)
Query: 153 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 211
G H++A + G+ VYS+G G+LGHG + + + P PI++L +
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 135
Query: 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 271
++ G+V ++G++ G+ G LV PQ +++ + I + A G TA ++ +G
Sbjct: 136 VTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193
Query: 272 VYTFSWGNDARLGHHTEPNDVEPHPLLGTL-ENIPVVQIXXXXXXXXXXXXQPSGMAVYS 330
+Y + WG LG + + P + T E + +V A+Y+
Sbjct: 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-----ALYT 248
Query: 331 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 390
D P +E L N DG++ WGW ++
Sbjct: 249 YGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 306
Query: 391 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 446
G +G GN + P V+ +D K + V+ G T V+E +V+++G G + LG
Sbjct: 307 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 208
Q G H +AVT +G V S+G N +GQLG G TE+ P+ I++
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 184
Query: 209 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 268
T +++ G +Y +G +G G + +LV P+ V S + A G T +S
Sbjct: 185 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVSY 242
Query: 269 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 309
G +YT+ W +LGH + + PH L L N + QI
Sbjct: 243 SGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQI 282
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 148 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXX 207
S G H+I+V+ G +Y++G + GQLGHG E+ P + +L
Sbjct: 228 SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR 287
Query: 208 XTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 267
TM ++ G++Y +G + FG+ GV SP V + VVQ + G T ++
Sbjct: 288 HTMALTSDGKLYGWGWNKFGQV--GVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT 345
Query: 268 REGRVYTFSWGNDARLG 284
V+ + G + +LG
Sbjct: 346 ERNNVFAWGRGTNGQLG 362
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL 194
Q G H++AVT + V+++G ++GQLG G + + P+ I +L
Sbjct: 333 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 140/379 (36%), Gaps = 79/379 (20%)
Query: 152 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 211
AG HS+A+ S +V S+G GQLGHG E+ RP
Sbjct: 11 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAED----RP--------------------- 45
Query: 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG- 270
SP + +L +V G T S+ G
Sbjct: 46 -----------------------------SPTQLSALDGHQIVSVTCGADHTVAYSQSGM 76
Query: 271 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYS 330
VY++ WG+ RLGH + P P+ L I + QI + V S
Sbjct: 77 EVYSWGWGDFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVTMEGE---VQS 132
Query: 331 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 390
D P+ I+ F+ + ++ +DG + WGWGRY
Sbjct: 133 WGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVT--EDGDLYGWGWGRY 190
Query: 391 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAI 450
G LG G+ VP+ V + K VA G T VS G +Y++G + LGH +
Sbjct: 191 GNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 250
Query: 451 ADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 510
D L P + +L N + QIS HT ALT GKLY +G G
Sbjct: 251 ED--------HLIPHKLEALS--NSFISQISGGFR-----HTMALTSDGKLYGWGWNKFG 295
Query: 511 QLGIELVNNQTERGNPERV 529
Q+G V N ++ +P +V
Sbjct: 296 QVG---VGNNLDQCSPVQV 311
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 11/296 (3%)
Query: 153 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 211
G H++A + G+ VYS+G G+LGHG + + + P PI++L +
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 123
Query: 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 271
++ G+V ++G++ G+ G LV PQ +++ + I + A G TA ++ +G
Sbjct: 124 VTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 272 VYTFSWGNDARLGHHTEPNDVEPHPLLGTL-ENIPVVQIXXXXXXXXXXXXQPSGMAVYS 330
+Y + WG LG + + P + T E + +V A+Y+
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-----ALYT 236
Query: 331 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 390
D P +E L N DG++ WGW ++
Sbjct: 237 YGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGFRHTMALTSDGKLYGWGWNKF 294
Query: 391 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 446
G +G GN + P V+ +D K + V+ G T V+E +V+++G G + LG
Sbjct: 295 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 208
Q G H +AVT +G V S+G N +GQLG G TE+ P+ I++
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 172
Query: 209 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 268
T +++ G +Y +G +G G + +LV P+ V S + A G T +S
Sbjct: 173 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVSY 230
Query: 269 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 309
G +YT+ W +LGH + + PH L L N + QI
Sbjct: 231 SGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQI 270
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 148 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXX 207
S G H+I+V+ G +Y++G + GQLGHG E+ P + +L
Sbjct: 216 SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFR 275
Query: 208 XTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 267
TM ++ G++Y +G + FG+ GV SP V + VVQ + G T ++
Sbjct: 276 HTMALTSDGKLYGWGWNKFGQV--GVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT 333
Query: 268 REGRVYTFSWGNDARLG 284
V+ + G + +LG
Sbjct: 334 ERNNVFAWGRGTNGQLG 350
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL 194
Q G H++AVT + V+++G ++GQLG G + + P+ I +L
Sbjct: 321 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 141/379 (37%), Gaps = 79/379 (20%)
Query: 152 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 211
AG HS+A+ S +V S+G GQLGHG E+ RP
Sbjct: 13 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAED----RP--------------------- 47
Query: 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG- 270
SP + +L +V G T S+ G
Sbjct: 48 -----------------------------SPTQLSALDGHQIVSVTCGADHTVAYSQSGX 78
Query: 271 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYS 330
VY++ WG+ RLGH + P P+ L I + QI + V S
Sbjct: 79 EVYSWGWGDFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVTXEGE---VQS 134
Query: 331 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 390
D P+ I+ F+ + ++ +DG + WGWGRY
Sbjct: 135 WGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVT--EDGDLYGWGWGRY 192
Query: 391 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAI 450
G LG G+ VP+ V + K VA G T VS G +Y++G + LGH +
Sbjct: 193 GNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL 252
Query: 451 ADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 510
D L P + +L N + QIS HT ALT GKLY +G G
Sbjct: 253 ED--------HLIPHKLEALS--NSFISQISGGAR-----HTXALTSDGKLYGWGWNKFG 297
Query: 511 QLGIELVNNQTERGNPERV 529
Q+G V N ++ +P +V
Sbjct: 298 QVG---VGNNLDQCSPVQV 313
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 11/296 (3%)
Query: 153 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 211
G H++A + G VYS+G G+LGHG + + + P PI++L +
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 125
Query: 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 271
++ G+V ++G++ G+ G LV PQ +++ + I + A G TA ++ +G
Sbjct: 126 VTXEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKXVAAGAEHTAAVTEDGD 183
Query: 272 VYTFSWGNDARLGHHTEPNDVEPHPLLGTL-ENIPVVQIXXXXXXXXXXXXQPSGMAVYS 330
+Y + WG LG + + P + T E V A+Y+
Sbjct: 184 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSG-----ALYT 238
Query: 331 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 390
D P +E L N DG++ WGW ++
Sbjct: 239 YGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGARHTXALTSDGKLYGWGWNKF 296
Query: 391 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 446
G +G GN + P V+ +D K + V+ G T V+E +V+++G G + LG
Sbjct: 297 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 208
Q G H +AVT +G V S+G N +GQLG G TE+ P+ I++
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEH 174
Query: 209 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 268
T +++ G +Y +G +G G + +LV P+ V S A G T +S
Sbjct: 175 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKXSXVACGWRHTISVSY 232
Query: 269 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 309
G +YT+ W +LGH + + PH L L N + QI
Sbjct: 233 SGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQI 272
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 146 ENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXX 205
+ S G H+I+V+ G +Y++G + GQLGHG E+ P + +L
Sbjct: 216 KXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG 275
Query: 206 XXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAV 265
T ++ G++Y +G + FG+ GV SP V + VVQ + G T
Sbjct: 276 ARHTXALTSDGKLYGWGWNKFGQV--GVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLA 333
Query: 266 LSREGRVYTFSWGNDARLG 284
++ V+ + G + +LG
Sbjct: 334 VTERNNVFAWGRGTNGQLG 352
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL 194
Q G H++AVT + V+++G ++GQLG G + + P+ I +L
Sbjct: 323 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 380 GRVCTWGWGRYGCLGHGNEECE-SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 438
G V T G G G LG G E P +V DV + G T +S+ G VYSFG
Sbjct: 27 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTVCLSKSGQVYSFG 84
Query: 439 CGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTES 498
C + +LG + +G ++V ++ E+VVQ+S +S HT ALT+
Sbjct: 85 CNDEGALGRDTSVEGS----------EMVPGKVELQEKVVQVSAGDS-----HTAALTDD 129
Query: 499 GKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDL 533
G+++ +G+ I L+ + P +V +D+
Sbjct: 130 GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV 164
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 379 DGRVCTWGWGR--YGCLGHGNEECES-VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 435
DGRV WG R G +G +S VP VQ DV + VA+G+ +++ DGD+Y
Sbjct: 129 DGRVFLWGSFRDNNGVIGLLEPMKKSMVP--VQVQLDVPVVKVASGNDHLVMLTADGDLY 186
Query: 436 SFGCGESASLGH-NAIADGQGNRHA--NVLTPQLVTSLKQVNERVVQISLTNSIYWNAHT 492
+ GCGE LG + +G R +L P+ V LK R + ++ T
Sbjct: 187 TLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVM-LKSRGSR-GHVRFQDAFCGAYFT 244
Query: 493 FALTESGKLYAFGAGDKGQLG 513
FA++ G +Y FG + QLG
Sbjct: 245 FAISHEGHVYGFGLSNYHQLG 265
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 140/388 (36%), Gaps = 75/388 (19%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 208
QA AG H++ ++ G VYSFG N G LG T+ E P +
Sbjct: 63 QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSH 122
Query: 209 TMLISDAGQVYAFGKDSFGEAEYGVQG--TKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 266
T ++D G+V+ +G SF + GV G + S V+ ++ VV+ A GN +L
Sbjct: 123 TAALTDDGRVFLWG--SFRDNN-GVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVML 179
Query: 267 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGM 326
+ +G +YT G G L +P + P +
Sbjct: 180 TADGDLYTLGCGEQ------------------GQLGRVPELFANRGGRQGLERLLVPKCV 221
Query: 327 AVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWG 386
+ SR H R + F +G V +G
Sbjct: 222 ML-------------KSRGSRGHVRFQDAF-----------CGAYFTFAISHEGHVYGFG 257
Query: 387 WGRYGCLGH-GNEECESVPKVVQALNDVKA-IHVATGDYTTFVVSEDGDVYSFGCGESAS 444
Y LG G E C + N K+ + + G + T + +G YS G E
Sbjct: 258 LSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGR 317
Query: 445 LGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAF 504
LG G+G ++ P L++ L V+ S+ +A+T+ G+++A+
Sbjct: 318 LGL-----GEGAEEKSI--PTLISRLPAVSSVACGASVG---------YAVTKDGRVFAW 361
Query: 505 GAGDKGQLG----------IELVNNQTE 522
G G QLG +E++ Q E
Sbjct: 362 GMGTNYQLGTGQDEDAWSPVEMMGKQLE 389
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 6/163 (3%)
Query: 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXX--XXXXXXX 207
A G + A++ +G VY FG ++ QLG TE + P+ + S
Sbjct: 237 AFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH 296
Query: 208 XTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 267
T+ + G+ Y+ G+ +G G +G + + P L+ L + V A G ++
Sbjct: 297 HTVCMDSEGKAYSLGRAEYGRLGLG-EGAEEKSIPTLISRLPAVSSV--ACGASVGYAVT 353
Query: 268 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQI 309
++GRV+ + G + +LG + + P ++G LEN V+ +
Sbjct: 354 KDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSV 396
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 156 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDA 215
H T G+V + G GQLG G E R +P T+ +S +
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVME-RKKPALVSIPEDVVQAEAGGMHTVCLSKS 77
Query: 216 GQVYAFGKDSFGE--AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 273
GQVY+FG + G + V+G+++V P VE + VVQ + G+ TA L+ +GRV
Sbjct: 78 GQVYSFGCNDEGALGRDTSVEGSEMV--PGKVELQEK--VVQVSAGDSHTAALTDDGRV- 132
Query: 274 TFSWG----NDARLGHHTEPNDVEPHPLLGTLENIPVVQI 309
F WG N+ +G EP P+ L ++PVV++
Sbjct: 133 -FLWGSFRDNNGVIG-LLEPMKKSMVPVQVQL-DVPVVKV 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 92/278 (33%), Gaps = 34/278 (12%)
Query: 253 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXX 312
VVQA G T LS+ G+VY+F ++ LG T E P L+ VVQ+
Sbjct: 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE-KVVQVSAG 119
Query: 313 XXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXX 372
S P ++ L++
Sbjct: 120 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ----LDVPVVKVASGNDH 175
Query: 373 XXXXGQDGRVCTWGWGRYGCLGH---------GNEECES--VPKVVQALNDVKAIHVA-- 419
DG + T G G G LG G + E VPK V + HV
Sbjct: 176 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 235
Query: 420 ---TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNER 476
G Y TF +S +G VY FG LG + PQ +TS K +
Sbjct: 236 DAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE--------SCFIPQNLTSFKNSTKS 287
Query: 477 VVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 514
V S HT + GK Y+ G + G+LG+
Sbjct: 288 WVGFSGGQH-----HTVCMDSEGKAYSLGRAEYGRLGL 320
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 148 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP 188
S G AVT G V+++G ++ QLG G E+ W P
Sbjct: 340 SSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP 380
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 380 GRVCTWGWGRYGCLGHGNEECE-SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 438
G V T G G G LG G E P +V DV + G T +S+ G VYSFG
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTVCLSKSGQVYSFG 73
Query: 439 CGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTES 498
C + +LG + +G ++V ++ E+VVQ+S +S HT ALT+
Sbjct: 74 CNDEGALGRDTSVEGS----------EMVPGKVELQEKVVQVSAGDS-----HTAALTDD 118
Query: 499 GKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDL 533
G+++ +G+ I L+ + P +V +D+
Sbjct: 119 GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV 153
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 379 DGRVCTWGWGR--YGCLGHGNEECES-VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 435
DGRV WG R G +G +S VP VQ DV + VA+G+ +++ DGD+Y
Sbjct: 118 DGRVFLWGSFRDNNGVIGLLEPMKKSMVP--VQVQLDVPVVKVASGNDHLVMLTADGDLY 175
Query: 436 SFGCGESASLGH-NAIADGQGNRHA--NVLTPQLVTSLKQVNERVVQISLTNSIYWNAHT 492
+ GCGE LG + +G R +L P+ V LK R + ++ T
Sbjct: 176 TLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVM-LKSRGSR-GHVRFQDAFCGAYFT 233
Query: 493 FALTESGKLYAFGAGDKGQLG 513
FA++ G +Y FG + QLG
Sbjct: 234 FAISHEGHVYGFGLSNYHQLG 254
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 140/388 (36%), Gaps = 75/388 (19%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 208
QA AG H++ ++ G VYSFG N G LG T+ E P +
Sbjct: 52 QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSH 111
Query: 209 TMLISDAGQVYAFGKDSFGEAEYGVQGT--KLVTSPQLVESLKNIFVVQAAIGNFFTAVL 266
T ++D G+V+ +G SF + GV G + S V+ ++ VV+ A GN +L
Sbjct: 112 TAALTDDGRVFLWG--SFRDNN-GVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVML 168
Query: 267 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGM 326
+ +G +YT G G L +P + P +
Sbjct: 169 TADGDLYTLGCGEQ------------------GQLGRVPELFANRGGRQGLERLLVPKCV 210
Query: 327 AVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWG 386
+ SR H R + F +G V +G
Sbjct: 211 ML-------------KSRGSRGHVRFQDAF-----------CGAYFTFAISHEGHVYGFG 246
Query: 387 WGRYGCLGH-GNEECESVPKVVQALNDVKA-IHVATGDYTTFVVSEDGDVYSFGCGESAS 444
Y LG G E C + N K+ + + G + T + +G YS G E
Sbjct: 247 LSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGR 306
Query: 445 LGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAF 504
LG G+G ++ P L++ L V+ S+ +A+T+ G+++A+
Sbjct: 307 LGL-----GEGAEEKSI--PTLISRLPAVSSVACGASVG---------YAVTKDGRVFAW 350
Query: 505 GAGDKGQLG----------IELVNNQTE 522
G G QLG +E++ Q E
Sbjct: 351 GMGTNYQLGTGQDEDAWSPVEMMGKQLE 378
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 6/163 (3%)
Query: 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXX--XXXXXXX 207
A G + A++ +G VY FG ++ QLG TE + P+ + S
Sbjct: 226 AFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH 285
Query: 208 XTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 267
T+ + G+ Y+ G+ +G G +G + + P L+ L + V A G ++
Sbjct: 286 HTVCMDSEGKAYSLGRAEYGRLGLG-EGAEEKSIPTLISRLPAVSSV--ACGASVGYAVT 342
Query: 268 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQI 309
++GRV+ + G + +LG + + P ++G LEN V+ +
Sbjct: 343 KDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSV 385
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 156 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDA 215
H T G+V + G GQLG G E R +P T+ +S +
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVME-RKKPALVSIPEDVVQAEAGGMHTVCLSKS 66
Query: 216 GQVYAFGKDSFGEA--EYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 273
GQVY+FG + G + V+G+++V P VE + VVQ + G+ TA L+ +GRV
Sbjct: 67 GQVYSFGCNDEGALGRDTSVEGSEMV--PGKVELQEK--VVQVSAGDSHTAALTDDGRV- 121
Query: 274 TFSWG----NDARLGHHTEPNDVEPHPLLGTLENIPVVQI 309
F WG N+ +G EP P+ L ++PVV++
Sbjct: 122 -FLWGSFRDNNGVIG-LLEPMKKSMVPVQVQL-DVPVVKV 158
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 92/278 (33%), Gaps = 34/278 (12%)
Query: 253 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXX 312
VVQA G T LS+ G+VY+F ++ LG T E P L+ VVQ+
Sbjct: 50 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE-KVVQVSAG 108
Query: 313 XXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXX 372
S P ++ L++
Sbjct: 109 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ----LDVPVVKVASGNDH 164
Query: 373 XXXXGQDGRVCTWGWGRYGCLGH---------GNEECES--VPKVVQALNDVKAIHVA-- 419
DG + T G G G LG G + E VPK V + HV
Sbjct: 165 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 224
Query: 420 ---TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNER 476
G Y TF +S +G VY FG LG + PQ +TS K +
Sbjct: 225 DAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE--------SCFIPQNLTSFKNSTKS 276
Query: 477 VVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 514
V S HT + GK Y+ G + G+LG+
Sbjct: 277 WVGFSGGQH-----HTVCMDSEGKAYSLGRAEYGRLGL 309
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 148 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP 188
S G AVT G V+++G ++ QLG G E+ W P
Sbjct: 329 SSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP 369
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 45/338 (13%)
Query: 152 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRP-IRSLXXXXXXXXXXXXXXTM 210
AG H++ +T G +YSFG N G LG T+E+ +P + L
Sbjct: 82 AGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSAC 141
Query: 211 LISDAGQVYAFG--KDSFGEAEYGVQGTKLVTSPQLVE--------SLKNIFVVQAAIGN 260
L+ D G+V+A+G +DS G + G K T L+E S + V+ G
Sbjct: 142 LLED-GRVFAWGSFRDSHGNMGLTIDGNKR-TPIDLMEGTVCCSIASGADHLVILTTAGK 199
Query: 261 FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXX 320
FT + +G++ S + + G + + + P L+ T P I
Sbjct: 200 VFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK-PFEAIWATNYCTFMRE 258
Query: 321 XQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQ-- 378
Q +++ ++ E L P GQ
Sbjct: 259 SQT--QVIWATGLNNFKQLAHETKGKE-----------FALTPIKTELKDIRHIAGGQHH 305
Query: 379 ------DGRVCTWGWGRYGCLGHGN-EECESVPKVVQALNDVKAIHVATGDYTTFVVSED 431
D + G YG LG G+ ++ P +V+ L + K + V G+ ++ V+ D
Sbjct: 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID 364
Query: 432 GDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTS 469
G +YS+G G + LG + DG + L P +V S
Sbjct: 365 GKLYSWGSGVNNQLG---VGDGD-----DELEPIVVVS 394
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 380 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGC 439
G V G G G LG G + E ++ A+ ++ G V+++ GD+YSFGC
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILER-KRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGC 101
Query: 440 GESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESG 499
+ +LG + DG ++ P L+ + + + IS +S H+ L E G
Sbjct: 102 NDEGALGRDTSEDGSESK------PDLI----DLPGKALCISAGDS-----HSACLLEDG 146
Query: 500 KLYAFGA--GDKGQLGIELVNNQTERGNPERVDIDL 533
+++A+G+ G +G+ + N+ R IDL
Sbjct: 147 RVFAWGSFRDSHGNMGLTIDGNK-------RTPIDL 175
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 410 LNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTS 469
L D++ H+A G + T +++ D G E LG + D V P +V
Sbjct: 293 LKDIR--HIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD-------VVEKPTIV-- 341
Query: 470 LKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTE 522
K++ E++V + ++A+T GKLY++G+G QLG+ +++ E
Sbjct: 342 -KKLTEKIVSVGCGEVC-----SYAVTIDGKLYSWGSGVNNQLGVGDGDDELE 388
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 120/302 (39%), Gaps = 45/302 (14%)
Query: 242 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWG----NDARLGHHTEPNDVEPHPL 297
P L E K VVQ A + + L G VY +WG N+ LG + + ++ P
Sbjct: 142 PPLAEGHK---VVQLAATDNMSCALFSNGEVY--AWGTFRCNEGILGFYQDKIKIQKTPW 196
Query: 298 -LGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQF 356
+ T +VQ+ P + + + ++ +++E+F
Sbjct: 197 KVPTFSKYNIVQLA------------PGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF 244
Query: 357 QLLNLQPXXXXXXXXXXXXXGQ--------DGRVCTWGWGRYGCLGHGNEECE-----SV 403
+L L P G+ D ++ +WG ++G G +E+ E +
Sbjct: 245 RLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGV-SEDVEDGALVTK 303
Query: 404 PKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG---HNAIADGQGNRHAN 460
PK + ++V +A G++ + ++S+DGD+YS G + +G N + H
Sbjct: 304 PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGK 363
Query: 461 VLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQ 520
L T L V + + + H+ A+ ++G Y++G G+ +G+ +
Sbjct: 364 ARAVPLPTKLNNVPK------FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDD 417
Query: 521 TE 522
TE
Sbjct: 418 TE 419
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTE----EEWRPRPIRSLXXXXXXXXXX 204
Q G H + + +G+V+++G+ QLG E + PRP
Sbjct: 208 QLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRP---FGLRHVKYIAS 264
Query: 205 XXXXTMLISDAGQVYAFGKDSFGE--AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFF 262
++ ++ ++G + FG+ V+ LVT P+ + N+ + A G
Sbjct: 265 GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324
Query: 263 TAVLSREGRVYT 274
+ +LS++G +Y+
Sbjct: 325 SLILSQDGDLYS 336
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 382 VCTWGWGRYGCLGHG----NEECESVPKVVQAL--NDVKAIHVATGDYTTFVVSEDGDVY 435
+ WG G LG G N+E + P++ L ++ K I A G T + E+ +V+
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKR-PRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 436 SFGCGESASLGHN 448
S+GC + +LG +
Sbjct: 90 SWGCNDVGALGRD 102
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 216 GQVYAFGKDSFGEAEYGV--QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 273
G+VYA+G E G K+ +P V + +VQ A G L EG V
Sbjct: 167 GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV- 225
Query: 274 TFSWGN 279
F+WGN
Sbjct: 226 -FAWGN 230
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 152 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEE 185
AG HS+AV G+ YS+G + +G G E++
Sbjct: 384 AGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDD 417
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|C Chain C, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|E Chain E, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|G Chain G, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 428 VSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIY 487
++ D V+SF ++A ++ ++ G + P+L++ +K+V++ VQ LT
Sbjct: 85 LNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRP-- 142
Query: 488 WNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDID 532
E+ L L E + + G PE++D++
Sbjct: 143 ---------EAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLN 178
>pdb|1DPE|A Chain A, Dipeptide-Binding Protein
Length = 507
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 428 VSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIY 487
++ D V+SF ++A ++ ++ G + P+L++ +K+V++ VQ LT
Sbjct: 85 LNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRP-- 142
Query: 488 WNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDID 532
E+ L L E + + G PE++D++
Sbjct: 143 ---------EAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLN 178
>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 384
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 399 ECESVPKVVQALNDVKAIHVATGDYTTFVVS-------EDGDVYSFGCGESASLGHNAIA 451
EC+++ K L V+ H +G Y ++V G Y F CG G +
Sbjct: 295 ECQNLGK----LTTVQIGHDNSGLYAKWLVECVMVRNEVTGHTYKFPCGRWLGKG---MD 347
Query: 452 DGQGNRHANVLTPQLVTSLKQVNER 476
DG R VL +L+TSL +V+ER
Sbjct: 348 DGSLER---VLVGELLTSLPEVDER 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,111,108
Number of Sequences: 62578
Number of extensions: 581580
Number of successful extensions: 1449
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 112
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)