Query 009463
Match_columns 534
No_of_seqs 530 out of 2200
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 13:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 2.4E-51 5.1E-56 407.6 27.0 353 155-530 59-440 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 2E-45 4.4E-50 365.3 27.5 332 145-498 104-465 (476)
3 KOG1427 Uncharacterized conser 100.0 2.3E-42 5E-47 322.0 18.3 326 147-498 58-399 (443)
4 KOG1427 Uncharacterized conser 100.0 2.1E-40 4.7E-45 308.9 18.0 337 163-530 19-376 (443)
5 KOG0783 Uncharacterized conser 99.9 6.8E-27 1.5E-31 242.9 15.9 272 158-441 136-417 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.3E-26 2.9E-31 240.7 13.8 275 210-508 136-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.6E-24 3.4E-29 232.5 22.9 315 142-482 522-884 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 1.8E-23 3.8E-28 224.6 23.2 343 143-530 477-869 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 6.5E-12 1.4E-16 90.7 5.5 50 163-212 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 7.7E-12 1.7E-16 90.3 5.6 50 379-428 1-51 (51)
11 KOG0941 E3 ubiquitin protein l 99.1 1.5E-12 3.3E-17 138.4 -6.7 184 145-381 14-198 (850)
12 PF13540 RCC1_2: Regulator of 99.0 3.8E-10 8.1E-15 71.2 4.3 30 363-392 1-30 (30)
13 PF13540 RCC1_2: Regulator of 99.0 4.7E-10 1E-14 70.8 4.3 30 199-228 1-30 (30)
14 KOG0941 E3 ubiquitin protein l 98.9 4.3E-11 9.3E-16 127.5 -6.3 135 361-510 14-156 (850)
15 KOG3669 Uncharacterized conser 94.4 2.1 4.5E-05 45.4 16.2 158 258-435 190-350 (705)
16 PF11725 AvrE: Pathogenicity f 93.9 0.9 2E-05 53.9 13.8 246 198-504 490-769 (1774)
17 KOG3669 Uncharacterized conser 91.4 23 0.00049 38.0 21.6 69 198-274 228-298 (705)
18 KOG0315 G-protein beta subunit 90.2 18 0.00039 34.7 15.9 114 253-387 127-244 (311)
19 KOG0943 Predicted ubiquitin-pr 89.2 0.049 1.1E-06 61.3 -2.7 135 250-392 373-509 (3015)
20 KOG0943 Predicted ubiquitin-pr 88.2 0.064 1.4E-06 60.4 -2.7 132 195-335 372-506 (3015)
21 KOG0646 WD40 repeat protein [G 84.8 54 0.0012 34.2 18.2 156 253-438 84-245 (476)
22 PF11725 AvrE: Pathogenicity f 84.0 4.2 9E-05 48.7 8.7 223 151-432 564-815 (1774)
23 KOG1408 WD40 repeat protein [F 82.5 47 0.001 36.7 15.0 103 150-276 138-247 (1080)
24 KOG1900 Nuclear pore complex, 80.7 43 0.00094 39.6 15.0 220 209-439 92-339 (1311)
25 PLN02153 epithiospecifier prot 80.6 69 0.0015 32.5 23.6 18 491-508 307-324 (341)
26 KOG1900 Nuclear pore complex, 77.3 47 0.001 39.2 14.0 215 158-387 93-339 (1311)
27 KOG4441 Proteins containing BT 77.1 45 0.00097 36.7 13.6 39 45-83 171-210 (571)
28 KOG0649 WD40 repeat protein [G 74.0 87 0.0019 30.2 12.7 82 302-387 61-143 (325)
29 PF07569 Hira: TUP1-like enhan 73.0 18 0.00038 34.5 8.1 29 412-440 12-40 (219)
30 KOG0646 WD40 repeat protein [G 71.8 95 0.0021 32.5 13.2 80 254-334 223-307 (476)
31 KOG0315 G-protein beta subunit 71.0 1E+02 0.0023 29.8 16.6 168 304-507 9-197 (311)
32 PF07569 Hira: TUP1-like enhan 69.4 25 0.00054 33.4 8.3 28 197-224 13-40 (219)
33 PHA03098 kelch-like protein; P 68.8 1.2E+02 0.0026 32.9 14.6 17 208-225 336-352 (534)
34 smart00706 TECPR Beta propelle 67.2 12 0.00027 23.9 4.0 25 145-169 8-33 (35)
35 COG4257 Vgb Streptogramin lyas 66.0 72 0.0016 31.4 10.4 140 152-331 61-205 (353)
36 cd00200 WD40 WD40 domain, foun 64.9 1.2E+02 0.0026 28.2 32.8 98 155-278 22-123 (289)
37 smart00706 TECPR Beta propelle 63.3 13 0.00028 23.8 3.5 24 198-221 9-33 (35)
38 PHA03098 kelch-like protein; P 62.3 2.3E+02 0.0051 30.6 16.1 15 210-224 289-303 (534)
39 KOG0278 Serine/threonine kinas 61.6 1.5E+02 0.0033 28.7 11.5 121 240-390 134-256 (334)
40 PF12937 F-box-like: F-box-lik 59.0 1.6 3.4E-05 30.2 -1.5 26 56-83 8-33 (47)
41 PF04841 Vps16_N: Vps16, N-ter 58.7 2.4E+02 0.0052 29.6 19.7 69 197-275 81-152 (410)
42 KOG4441 Proteins containing BT 54.2 1.6E+02 0.0036 32.4 12.3 21 367-387 510-530 (571)
43 TIGR01063 gyrA DNA gyrase, A s 53.9 4E+02 0.0087 30.7 20.5 210 152-389 544-770 (800)
44 PHA02713 hypothetical protein; 53.6 2E+02 0.0044 31.5 13.0 18 207-224 343-360 (557)
45 KOG1274 WD40 repeat protein [G 52.4 3.5E+02 0.0075 31.1 14.0 29 302-332 55-84 (933)
46 PRK05560 DNA gyrase subunit A; 51.2 4.4E+02 0.0096 30.4 22.0 214 152-389 546-773 (805)
47 KOG0293 WD40 repeat-containing 51.1 3.1E+02 0.0067 28.6 12.8 175 206-438 324-511 (519)
48 PLN02153 epithiospecifier prot 50.4 2.8E+02 0.0061 28.0 18.8 17 207-224 130-146 (341)
49 PHA02713 hypothetical protein; 47.4 4.2E+02 0.0091 29.1 17.5 14 426-439 458-471 (557)
50 PF02239 Cytochrom_D1: Cytochr 45.9 3.6E+02 0.0077 27.8 13.7 64 198-276 28-95 (369)
51 COG4257 Vgb Streptogramin lyas 40.1 1E+02 0.0022 30.4 6.8 125 124-275 76-205 (353)
52 KOG1034 Transcriptional repres 39.1 2.4E+02 0.0053 28.4 9.4 58 374-439 323-382 (385)
53 cd00200 WD40 WD40 domain, foun 38.4 3.2E+02 0.0069 25.1 28.0 108 198-333 11-122 (289)
54 PF06739 SBBP: Beta-propeller 37.0 39 0.00084 22.2 2.6 19 371-389 15-33 (38)
55 KOG0296 Angio-associated migra 36.2 4.9E+02 0.011 26.7 17.7 20 209-228 163-182 (399)
56 KOG1587 Cytoplasmic dynein int 33.2 6.9E+02 0.015 27.4 15.3 18 258-275 358-375 (555)
57 KOG1240 Protein kinase contain 33.0 9.5E+02 0.021 29.0 19.0 76 146-226 1050-1130(1431)
58 PF12341 DUF3639: Protein of u 32.8 1.2E+02 0.0026 18.5 3.9 24 251-274 2-25 (27)
59 COG5308 NUP170 Nuclear pore co 32.7 8E+02 0.017 28.6 12.9 62 158-223 96-159 (1263)
60 KOG1034 Transcriptional repres 32.1 1.1E+02 0.0023 30.8 5.7 55 161-223 326-382 (385)
61 PF04841 Vps16_N: Vps16, N-ter 31.8 6.2E+02 0.013 26.5 20.6 71 145-223 81-154 (410)
62 TIGR03300 assembly_YfgL outer 31.1 3.2E+02 0.007 27.8 9.8 15 261-275 362-376 (377)
63 PF04762 IKI3: IKI3 family; I 29.0 1E+03 0.022 28.1 18.7 30 250-279 426-457 (928)
64 smart00256 FBOX A Receptor for 28.9 28 0.00062 22.5 0.9 26 56-83 5-30 (41)
65 TIGR01062 parC_Gneg DNA topois 28.7 9.2E+02 0.02 27.5 14.9 124 367-514 533-661 (735)
66 PF14779 BBS1: Ciliary BBSome 28.6 3.9E+02 0.0084 26.1 8.9 57 153-221 194-255 (257)
67 PRK05560 DNA gyrase subunit A; 28.6 9.7E+02 0.021 27.7 23.9 222 257-514 545-779 (805)
68 TIGR03548 mutarot_permut cycli 27.4 6.3E+02 0.014 25.1 11.9 18 491-508 216-233 (323)
69 PF08450 SGL: SMP-30/Gluconola 27.0 5.4E+02 0.012 24.3 10.9 148 158-321 91-244 (246)
70 KOG2444 WD40 repeat protein [G 25.9 1.3E+02 0.0028 28.8 4.9 64 258-333 68-131 (238)
71 TIGR01063 gyrA DNA gyrase, A s 25.9 1.1E+03 0.023 27.3 25.4 224 257-514 543-776 (800)
72 PF00167 FGF: Fibroblast growt 25.4 1.8E+02 0.0039 24.5 5.5 65 198-274 1-65 (122)
73 KOG0289 mRNA splicing factor [ 24.9 5.2E+02 0.011 27.1 9.3 68 261-332 350-417 (506)
74 PF03785 Peptidase_C25_C: Pept 24.8 1.1E+02 0.0025 23.9 3.6 32 362-393 17-49 (81)
75 KOG1240 Protein kinase contain 24.6 9E+02 0.019 29.2 12.0 120 305-440 1050-1181(1431)
76 PF13418 Kelch_4: Galactose ox 23.8 67 0.0015 21.9 2.1 17 422-438 3-19 (49)
77 KOG0291 WD40-repeat-containing 23.5 1.1E+03 0.024 26.7 26.3 119 149-281 302-425 (893)
78 KOG2111 Uncharacterized conser 23.3 7.8E+02 0.017 24.8 13.6 153 250-439 94-255 (346)
79 PF03785 Peptidase_C25_C: Pept 22.4 1.4E+02 0.0031 23.4 3.7 32 198-229 17-49 (81)
80 PF01436 NHL: NHL repeat; Int 22.3 1.6E+02 0.0034 17.7 3.3 18 156-173 5-22 (28)
81 PLN03215 ascorbic acid mannose 22.2 3.1E+02 0.0068 28.3 7.4 65 142-221 157-224 (373)
82 KOG0291 WD40-repeat-containing 22.2 1.2E+03 0.026 26.6 29.1 111 264-391 313-425 (893)
83 TIGR03548 mutarot_permut cycli 22.1 7.5E+02 0.016 24.6 10.3 15 494-508 299-313 (323)
84 PHA02790 Kelch-like protein; P 20.9 5.5E+02 0.012 27.5 9.4 15 210-224 357-371 (480)
85 KOG0289 mRNA splicing factor [ 20.2 1E+03 0.022 25.1 12.5 70 423-507 350-419 (506)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.4e-51 Score=407.63 Aligned_cols=353 Identities=27% Similarity=0.432 Sum_probs=290.3
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCcce-eeceeeccC--CCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCccc
Q 009463 155 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEE-WRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEY 231 (534)
Q Consensus 155 ~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~-~~P~~v~~~--~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~ 231 (534)
.|...++.-..||+||+|..+|||.+..+.. ..|+..+.. ....|++++||+.|+++|++||+||+||.|..|+||.
T Consensus 59 ~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr 138 (476)
T COG5184 59 KHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGR 138 (476)
T ss_pred cchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccc
Confidence 4445667888999999999999999987666 778888766 5678999999999999999999999999999999997
Q ss_pred CCC--------------CeeeeecCeEecc----CCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccc
Q 009463 232 GVQ--------------GTKLVTSPQLVES----LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVE 293 (534)
Q Consensus 232 g~~--------------~~~~~~~P~~v~~----l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 293 (534)
-.. ......+|..|+. ....++++++||++++++|+++|+||.||....+.++.+...+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k 218 (476)
T COG5184 139 DIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQK 218 (476)
T ss_pred ccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccccc
Confidence 651 2234677888876 3345799999999999999999999999999998888884443332
Q ss_pred ----ccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC
Q 009463 294 ----PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG 369 (534)
Q Consensus 294 ----p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G 369 (534)
+.++.. ....|+++++|..|.++|+. +| ++|.||+|..||||.........+..+..+-... .|..|+||
T Consensus 219 ~~~~~~p~~v--~~~~i~qla~G~dh~i~lt~--~G-~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~-~i~~vacG 292 (476)
T COG5184 219 TSIQFTPLKV--PKKAIVQLAAGADHLIALTN--EG-KVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIR-NIKYVACG 292 (476)
T ss_pred ceeeeeeeec--CchheeeeccCCceEEEEec--CC-cEEEecCCcccccCCchhhhcccccccCChhhhh-hhhhcccC
Confidence 333332 24569999999999999997 88 9999999999999998877766666665432222 36789999
Q ss_pred CcEEEEEecCCcEEEEECCCCCccCCCC----CCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCC
Q 009463 370 AWHAAVVGQDGRVCTWGWGRYGCLGHGN----EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASL 445 (534)
Q Consensus 370 ~~hs~alt~~G~vy~wG~n~~GqLG~g~----~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqL 445 (534)
.+|++||+++|++|+||.|.+||||.+. ......|.....+.++.|..+++|..|+++|..+|.||+||++..+||
T Consensus 293 ~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql 372 (476)
T COG5184 293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372 (476)
T ss_pred cceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence 9999999999999999999999999982 112345566666677789999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCC
Q 009463 446 GHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGN 525 (534)
Q Consensus 446 G~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~ 525 (534)
|..+ .....+..|+++... .++.+++| |..|+++.+.+|+||.||+|++||||.|+.+ .....
T Consensus 373 g~~~------~~~~~~~~~~~ls~~----~~~~~v~~-----gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~--~~~~~ 435 (476)
T COG5184 373 GIQE------EITIDVSTPTKLSVA----IKLEQVAC-----GTHHNIARTDDGSVYSWGWGEHGNLGNGPKE--ADVLV 435 (476)
T ss_pred cCcc------cceeecCCccccccc----cceEEEEe-----cCccceeeccCCceEEecCchhhhccCCchh--hhccc
Confidence 9986 124556667666643 56899999 9999999999999999999999999999654 56666
Q ss_pred ceEee
Q 009463 526 PERVD 530 (534)
Q Consensus 526 P~~v~ 530 (534)
|+.+.
T Consensus 436 pt~i~ 440 (476)
T COG5184 436 PTLIR 440 (476)
T ss_pred ccccc
Confidence 66665
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2e-45 Score=365.31 Aligned_cols=332 Identities=25% Similarity=0.396 Sum_probs=265.4
Q ss_pred ccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCC-------------c---ceeeceeecc----CCCCcEEEEEe
Q 009463 145 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT-------------E---EEWRPRPIRS----LQGIRIIQAAA 204 (534)
Q Consensus 145 ~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~-------------~---~~~~P~~v~~----~~~~~I~~Is~ 204 (534)
..|++++||..|+++++.||.||+||.|..|+||.... . ....|..|+. ....+|++++|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 47889999999999999999999999999999997651 1 1355777765 23448999999
Q ss_pred CCCeEEEEecCCcEEEEecCCCCCcccCCCCe--e--eeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCC
Q 009463 205 GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGT--K--LVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGND 280 (534)
Q Consensus 205 G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~--~--~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~ 280 (534)
|++++++|+++|+||+||....+.++.+.... . ...+|..+. ...|+++++|..|.++|+++|++|.||.|..
T Consensus 184 g~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qk 260 (476)
T COG5184 184 GWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQK 260 (476)
T ss_pred CCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcc
Confidence 99999999999999999999988888883222 2 335555554 4569999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCC----CcCceeeeec
Q 009463 281 ARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD----EKHPRLIEQF 356 (534)
Q Consensus 281 gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~----~~~p~~i~~~ 356 (534)
||||.........+..+...+.-..|+.|+||.+|+++|.+ +| +||+||.|.+||||.++... ...|.....+
T Consensus 261 gqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~--~G-~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~ 337 (476)
T COG5184 261 GQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDE--DG-EIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL 337 (476)
T ss_pred cccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcC--CC-eEEEeccchhcccccCcccccceeeccccccccC
Confidence 99999887766655555444444458899999999999998 99 99999999999999982211 1222222221
Q ss_pred ccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCC--CCCccccEEecccCCCcEEEEEecCceEEEEEeCCCE
Q 009463 357 QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN--EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDV 434 (534)
Q Consensus 357 ~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~--~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~v 434 (534)
....|..|++|..|+++|..+|.||+||.++.+|||... ......|+++.. ..++.+|+||..|+++.+++|+|
T Consensus 338 --~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~--~~~~~~v~~gt~~~~~~t~~gsv 413 (476)
T COG5184 338 --SGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV--AIKLEQVACGTHHNIARTDDGSV 413 (476)
T ss_pred --CCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCcccccc--ccceEEEEecCccceeeccCCce
Confidence 234578999999999999999999999999999999998 555566666553 33699999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcC
Q 009463 435 YSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTES 498 (534)
Q Consensus 435 y~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~ 498 (534)
|+||.+++|+||.+. ....+..|+.+.........++...+ |..+++....-
T Consensus 414 y~wG~ge~gnlG~g~-------~~~~~~~pt~i~~~~~~~~~~i~~g~-----~~~~~v~~~~~ 465 (476)
T COG5184 414 YSWGWGEHGNLGNGP-------KEADVLVPTLIRQPLLSGHNIILAGY-----GNQFSVIEETM 465 (476)
T ss_pred EEecCchhhhccCCc-------hhhhccccccccccccCCCceEEecc-----CcceEEEecch
Confidence 999999999999987 46677888888753334456676666 76676665543
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.3e-42 Score=322.05 Aligned_cols=326 Identities=28% Similarity=0.435 Sum_probs=276.0
Q ss_pred ceEEEcC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecC
Q 009463 147 NSQAIAG--PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 147 i~~is~G--~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n 224 (534)
|.-|++| ..|+++++-+|+.|.||.|..||||+++......|+.|+.+...+|++.+||++|+++||++|.||+||.|
T Consensus 58 iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeN 137 (443)
T KOG1427|consen 58 IRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGEN 137 (443)
T ss_pred EEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccc
Confidence 4456665 48999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCc-------------
Q 009463 225 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND------------- 291 (534)
Q Consensus 225 ~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~------------- 291 (534)
.+||||+++...+..+.| ++ ......|+.|+||..+++.|+..+.+.++|.-.|||||++++...
T Consensus 138 K~GQlGlgn~~~~v~s~~-~~-~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 138 KYGQLGLGNAKNEVESTP-LP-CVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred ccccccccccccccccCC-Cc-cccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeec
Confidence 999999998544333333 22 233556999999999999999999999999999999999986532
Q ss_pred -ccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCC
Q 009463 292 -VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA 370 (534)
Q Consensus 292 -~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~ 370 (534)
..|..+.. +.+..|++++||.+|++++.. ++ +||+||.+-+|.||+....+...|++++.|+..+.-..++.||+
T Consensus 216 ~pr~~~i~~-~dgvqiv~~acg~nhtvavd~--nk-rVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~ 291 (443)
T KOG1427|consen 216 QPRPKAIAS-LDGVQIVKVACGTNHTVAVDK--NK-RVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGY 291 (443)
T ss_pred CCCcccccc-ccceeeEEEeccCcceeeecC--Cc-cEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeec
Confidence 12333333 677889999999999999996 77 99999999999999999999999999999988887778999999
Q ss_pred cEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCC
Q 009463 371 WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAI 450 (534)
Q Consensus 371 ~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~ 450 (534)
..++.+.+-|.+|.||.+... -+.-..|+.+..+.+..+..+.|+..|.+ +..|..+.+||...+|.++-+.
T Consensus 292 t~Sl~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp- 363 (443)
T KOG1427|consen 292 TGSLNVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGP- 363 (443)
T ss_pred ccceeecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCc-
Confidence 999999999999999987642 23456788888888888999999998865 4566789999987776665443
Q ss_pred CCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcC
Q 009463 451 ADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTES 498 (534)
Q Consensus 451 ~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~ 498 (534)
+-......|..++.+ .+..|.+|++ |..|+++|.++
T Consensus 364 -----~~Qkss~~Pk~v~~l--~~i~v~~Vam-----GysHs~vivd~ 399 (443)
T KOG1427|consen 364 -----NGQKSSAAPKKVDML--EGIHVMGVAM-----GYSHSMVIVDR 399 (443)
T ss_pred -----cccccccCccccchh--cceeccceee-----ccceEEEEEcc
Confidence 234556778888888 6678899999 99999998765
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=308.92 Aligned_cols=337 Identities=26% Similarity=0.420 Sum_probs=273.1
Q ss_pred CCcEEEEeCCCCCCcCCCC---CcceeeceeeccCCCCcEEEEEeC--CCeEEEEecCCcEEEEecCCCCCcccCCCCee
Q 009463 163 KGVVYSFGSNSSGQLGHGT---TEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTK 237 (534)
Q Consensus 163 ~G~vy~wG~n~~GqLG~g~---~~~~~~P~~v~~~~~~~I~~Is~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~ 237 (534)
-|++..+|.-..-+.|.-+ ..+...|.++..+.+.+|.-|+.| ..|+++|+-+|+.|+||+|..||||+++ ..
T Consensus 19 ~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD--~k 96 (443)
T KOG1427|consen 19 GGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGD--MK 96 (443)
T ss_pred CccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccc--hh
Confidence 3566666655555555433 224567999998888889888876 5699999999999999999999999995 77
Q ss_pred eeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEE
Q 009463 238 LVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLL 317 (534)
Q Consensus 238 ~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~ 317 (534)
....|+.|+.|...+|++.+||++|+++||++|.+|.||+|.+||||.+...+.....++.. ....+|+.|+||..+++
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv 175 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTV 175 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcc-ccCccceeeccccceEE
Confidence 78899999999999999999999999999999999999999999999998766544333333 45567999999999999
Q ss_pred EeeeeCCCCeEEEeeeCCCccccCCCCCC--------------CcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEE
Q 009463 318 ALACQPSGMAVYSVGCGLGGKLGHGSRTD--------------EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVC 383 (534)
Q Consensus 318 ~lt~~~~G~~vy~wG~n~~gqLG~g~~~~--------------~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy 383 (534)
.|.. .+ .+..+|--.|||||++.... +..|..|.. ..+++|++++||.+|++|++++++||
T Consensus 176 ~l~~--~~-si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~--~dgvqiv~~acg~nhtvavd~nkrVy 250 (443)
T KOG1427|consen 176 WLSS--TE-SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIAS--LDGVQIVKVACGTNHTVAVDKNKRVY 250 (443)
T ss_pred Eeec--cc-ceeecCCccccccccCcchhhccccccceeeeecCCCcccccc--ccceeeEEEeccCcceeeecCCccEE
Confidence 9997 88 99999999999999985432 122333433 35678999999999999999999999
Q ss_pred EEECCCCCccCCCCCCCccccEEecccC--CCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCcccc
Q 009463 384 TWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANV 461 (534)
Q Consensus 384 ~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~ 461 (534)
.||.+.||.||+....+...|++++.++ +.-..++.||...++++.+-|.+|.||.+... ....
T Consensus 251 sWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~--------------ge~~ 316 (443)
T KOG1427|consen 251 SWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN--------------GEDW 316 (443)
T ss_pred EeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC--------------cccc
Confidence 9999999999999988899999888753 34466789999999999999999999976431 3345
Q ss_pred ccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCCceEee
Q 009463 462 LTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 530 (534)
Q Consensus 462 ~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P~~v~ 530 (534)
..|.++..+.. -++..+.+ +..| ..+..|-.+.+||..-+|.++-+. +.+.+...|.+|+
T Consensus 317 mypkP~~dlsg--wnl~~~~~-----~~~h-~~v~ad~s~i~wg~~~~g~~lggp-~~Qkss~~Pk~v~ 376 (443)
T KOG1427|consen 317 MYPKPMMDLSG--WNLRWMDS-----GSMH-HFVGADSSCISWGHAQYGELLGGP-NGQKSSAAPKKVD 376 (443)
T ss_pred cCCCchhhcCC--ccCCCcCc-----ccee-eeecccccccccccccccccccCc-cccccccCccccc
Confidence 67777777743 45667766 6444 567788899999999888877664 4678888897776
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=6.8e-27 Score=242.92 Aligned_cols=272 Identities=21% Similarity=0.300 Sum_probs=212.3
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccC--CCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCC
Q 009463 158 IAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQG 235 (534)
Q Consensus 158 ~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~--~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~ 235 (534)
.+++.-..||+||.|.+--||+|+..+...|..|..+ ++.-+.||+.+.+|++++++.|+||++|....|.||.|+
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gd-- 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGD-- 213 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCc--
Confidence 3445668899999999999999999999999999766 456788999999999999999999999999999999995
Q ss_pred eeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCC-ccccccccc-ccCCc-CEEEEEec
Q 009463 236 TKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN-DVEPHPLLG-TLENI-PVVQIAAG 312 (534)
Q Consensus 236 ~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~-~~~~~-~i~~Ia~G 312 (534)
......|++|+.+.+.+|.+|++...|+++||++|-||+||.|..+|||..+... ...|.++.. .+++. .|+.+++|
T Consensus 214 eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 214 EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 6778889999999999999999999999999999999999999999999877643 234544443 12232 68999999
Q ss_pred ceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCC-CcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCC
Q 009463 313 YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD-EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYG 391 (534)
Q Consensus 313 ~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~-~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~G 391 (534)
..|+++-+ +- .||+||-| .||||..+... ...|+.+.. ....|+-++|...-+++++++|.+|++-+-..-
T Consensus 294 ~~hsVawt---~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~---~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~ 365 (1267)
T KOG0783|consen 294 KSHSVAWT---DT-DVYSWGLN-NGQLGISDNISVVTTPRRLAG---LLSPVIHVVATTRATVCLLQNNSIIAFADYNQV 365 (1267)
T ss_pred cceeeeee---cc-eEEEeccc-CceecCCCCCceeecchhhcc---cccceEEEEecCccEEEEecCCcEEEEecccce
Confidence 99999999 66 99999986 79999877643 467765533 556788999999999999999999998753221
Q ss_pred ccCCCCCCCccccEEecc----cCCCcEEEEEecCceEEEEEeCCCEEEEeCCC
Q 009463 392 CLGHGNEECESVPKVVQA----LNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 441 (534)
Q Consensus 392 qLG~g~~~~~~~P~~v~~----l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~ 441 (534)
.+... .....-..|.. +.-..+.+..+....-+++|+-|+||.|-++.
T Consensus 366 k~~~n--~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 366 KLPFN--VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred ecCcc--hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 11111 00001111110 01123445566667889999999999998654
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=1.3e-26 Score=240.73 Aligned_cols=275 Identities=24% Similarity=0.339 Sum_probs=213.2
Q ss_pred EEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCC--CceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCC
Q 009463 210 MLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK--NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHT 287 (534)
Q Consensus 210 ~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~--~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~ 287 (534)
.+++.-+.||+||.|.+-.||+|+ ......|.+|..++ +.-+.+|+.+..|+++|++.|+||+||-|..|+||.++
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign--~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gd 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGN--GKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGD 213 (1267)
T ss_pred cccCCccceeEecccccccccccC--CCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCc
Confidence 345666899999999999999996 55667788887765 55688899999999999999999999999999999999
Q ss_pred CCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCC-CCcCceeeeecccCCC-CcEE
Q 009463 288 EPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-DEKHPRLIEQFQLLNL-QPVV 365 (534)
Q Consensus 288 ~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~-~~~~p~~i~~~~~~~~-~i~~ 365 (534)
......|++|++ +.+.+|.+|++...|+++||+ +| .||+||.|..+|||..+.. ....|+.|......+. .|+.
T Consensus 214 eq~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~--~g-~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIg 289 (1267)
T KOG0783|consen 214 EQYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTK--FG-SVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIG 289 (1267)
T ss_pred cccccccccccc-ccccceEEEEeecceeEEEee--cc-eEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhh
Confidence 888889999998 888899999999999999998 99 9999999999999987654 4567777766555554 7899
Q ss_pred EEeCCcEEEEEecCCcEEEEECCCCCccCCCC-CCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCC
Q 009463 366 VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN-EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESAS 444 (534)
Q Consensus 366 Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~-~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gq 444 (534)
|++|..|+++.++. .||+||.|. ||||..+ ......|+.+.. ....+..|+|...-|+++++++.+|++-....-.
T Consensus 290 vaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k 366 (1267)
T KOG0783|consen 290 VAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVK 366 (1267)
T ss_pred hhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEeccccee
Confidence 99999999999965 699999986 9999876 456677866533 3457999999999999999999999997543322
Q ss_pred CCCCCCCCCCCCCccccccCeEeeeccccc--ceEEEEEeeeccccccEEEEEEcCCCEEEEeCCC
Q 009463 445 LGHNAIADGQGNRHANVLTPQLVTSLKQVN--ERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 508 (534)
Q Consensus 445 LG~~~~~~~~~~~~~~~~~P~~v~~l~~~~--~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~ 508 (534)
+.... ....-..|..-+... ..+.+..+ -..--+++|+-|+||.|-.+.
T Consensus 367 ~~~n~----------~~lks~~V~gg~l~~~~~~~~k~~a-----~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 367 LPFNV----------DFLKSLKVTGGPLSLTRFNVRKLLA-----SENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred cCcch----------hccceeEEecCccchhhhhhhhcch-----hhhheeeeccCCeEEEEecCC
Confidence 22111 111111111110000 11222222 234567899999999998764
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-24 Score=232.50 Aligned_cols=315 Identities=22% Similarity=0.333 Sum_probs=217.3
Q ss_pred eecccceEEEcCCCeEEEEE--cCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEE
Q 009463 142 CCRRENSQAIAGPGHSIAVT--SKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVY 219 (534)
Q Consensus 142 ~~~~~i~~is~G~~h~~~l~--~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy 219 (534)
....+|++|+.|-....++. .+|-+++-|... .....+++......+|+.+.+...---.+.++|++|
T Consensus 522 ~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k----------~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkif 591 (3738)
T KOG1428|consen 522 CLPEPIVQISVGIDTIMFRSGAGHGWIASVDDKK----------RNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIF 591 (3738)
T ss_pred cCCCceEEEEeccchhheeeccCcceEEeccCcc----------cccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEE
Confidence 55678999999987776665 556666665322 111222333334458888865544445789999999
Q ss_pred EEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcc-c-----
Q 009463 220 AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDV-E----- 293 (534)
Q Consensus 220 ~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~-~----- 293 (534)
..|.... .....-..+..+++..|.+++.|..|.++++.+|+||+||-|+.+|+|.-...... .
T Consensus 592 M~G~~tm----------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~ 661 (3738)
T KOG1428|consen 592 MGGLHTM----------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSG 661 (3738)
T ss_pred eecceeE----------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCccccc
Confidence 9996421 11123445667889999999999999999999999999999999999974332111 1
Q ss_pred -------ccccccccCCcCEEEEEecceeEEEe----eeeCCCCeEEEeeeCCCccccCCC-------------------
Q 009463 294 -------PHPLLGTLENIPVVQIAAGYCYLLAL----ACQPSGMAVYSVGCGLGGKLGHGS------------------- 343 (534)
Q Consensus 294 -------p~~v~~~~~~~~i~~Ia~G~~~~~~l----t~~~~G~~vy~wG~n~~gqLG~g~------------------- 343 (534)
|.-....+.+.+.+...||.....-+ .-.+.| .+-.+|.+..+.+-.|-
T Consensus 662 ~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G-~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHv 740 (3738)
T KOG1428|consen 662 RQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKG-TMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHV 740 (3738)
T ss_pred ceeecccCCccceeecCCcchhhhcccccccccccccCCCCCC-cccccCCCcccceeccccccccCcCCcCCCCHHHhh
Confidence 11111112223333444444332222 223456 77777777666553220
Q ss_pred -C-------CCCcCceeeee-cccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCc
Q 009463 344 -R-------TDEKHPRLIEQ-FQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVK 414 (534)
Q Consensus 344 -~-------~~~~~p~~i~~-~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~ 414 (534)
. .....|..+.. ......++++|+||..|+++|-+|++||++|+|.+||||.|+......|++|..+.+..
T Consensus 741 Q~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~ 820 (3738)
T KOG1428|consen 741 QFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTV 820 (3738)
T ss_pred eecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCc
Confidence 0 00122333222 12235688999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecc-cccceEEEEEe
Q 009463 415 AIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLK-QVNERVVQISL 482 (534)
Q Consensus 415 i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~-~~~~~v~~I~~ 482 (534)
+++|++|.+||+++..||.||+||.-..|||+.+. .+.......|.++..+. +.+.+...|.+
T Consensus 821 ~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~-----~e~~~WNA~Pe~v~~~G~~f~~~A~WIGA 884 (3738)
T KOG1428|consen 821 IVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPA-----GEKAGWNAIPEKVSGFGPGFNAFAGWIGA 884 (3738)
T ss_pred eEEEecCCCceEEEecCCcEEEeccccCccccCcc-----ccccccccCCCcCCCCCccccccceeecc
Confidence 99999999999999999999999999999999875 33445556777777653 23455566665
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-23 Score=224.60 Aligned_cols=343 Identities=21% Similarity=0.288 Sum_probs=234.7
Q ss_pred ecccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEe--cCCcEEE
Q 009463 143 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLIS--DAGQVYA 220 (534)
Q Consensus 143 ~~~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt--~~G~vy~ 220 (534)
+..+-+.+-.++...++-+.+|+||.-|... ++|+-.....+.-..++ .+|++|+.|-+..+++. .+|-++.
T Consensus 477 ~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWmEL~l~----~~IVq~SVG~D~~~~~~~A~~G~I~~ 550 (3738)
T KOG1428|consen 477 LHPQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWMELCLP----EPIVQISVGIDTIMFRSGAGHGWIAS 550 (3738)
T ss_pred cCchheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceEEecCC----CceEEEEeccchhheeeccCcceEEe
Confidence 3445567788889999999999999999543 56655444444433333 37999999988766665 5666666
Q ss_pred EecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccc
Q 009463 221 FGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT 300 (534)
Q Consensus 221 wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 300 (534)
.|+... ...-++....+..+|+.+.+...---.++++|++|..|...-. .......+. .
T Consensus 551 v~D~k~------------~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln-~ 609 (3738)
T KOG1428|consen 551 VDDKKR------------NGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLN-G 609 (3738)
T ss_pred ccCccc------------ccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhh-c
Confidence 664321 1111112223456788886655445578999999988743210 001122233 3
Q ss_pred cCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCC-cCceeeeeccc-----------CCCCcEEEEe
Q 009463 301 LENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDE-KHPRLIEQFQL-----------LNLQPVVVAA 368 (534)
Q Consensus 301 ~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~-~~p~~i~~~~~-----------~~~~i~~Ia~ 368 (534)
+++.-|.+++.|..|.++++. +| .||.||-|..+|+|.-..... ..|+.-...+. ....-+...|
T Consensus 610 L~~~~isslAlGKsH~~av~r--NG-~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~C 686 (3738)
T KOG1428|consen 610 LDNVMISSLALGKSHGVAVTR--NG-HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQC 686 (3738)
T ss_pred cccceeehhhccccceeEEEe--CC-eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhc
Confidence 788889999999999999998 99 999999999999998654332 22221111000 0111122233
Q ss_pred CCcEEEEE------ecCCcEEEEECCCCCccCCCC---------------------------CCCccccEEec---ccCC
Q 009463 369 GAWHAAVV------GQDGRVCTWGWGRYGCLGHGN---------------------------EECESVPKVVQ---ALND 412 (534)
Q Consensus 369 G~~hs~al------t~~G~vy~wG~n~~GqLG~g~---------------------------~~~~~~P~~v~---~l~~ 412 (534)
|.-....+ .-.|.+..+|.++.+.|-.|- ......|..|. .+.+
T Consensus 687 G~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hd 766 (3738)
T KOG1428|consen 687 GLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHD 766 (3738)
T ss_pred ccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcc
Confidence 32211111 236778888888776653221 00112233332 3456
Q ss_pred CcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEE
Q 009463 413 VKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHT 492 (534)
Q Consensus 413 ~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht 492 (534)
.++++|+||..|+++|.+|++||+||+|.+||||.|+ ......|+.|..+ .+..+++|++ |++|+
T Consensus 767 vkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GD--------t~Sk~~Pq~V~~~--~~t~~vQVaA-----GSNHT 831 (3738)
T KOG1428|consen 767 VKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGD--------TLSKNTPQQVILP--SDTVIVQVAA-----GSNHT 831 (3738)
T ss_pred eeEEEEeccCceEEEEecCCcEEEecCCcccccCcCc--------cccCCCcceEEcC--CCCceEEEec-----CCCce
Confidence 7899999999999999999999999999999999998 5556789999887 4567999999 99999
Q ss_pred EEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCCceEee
Q 009463 493 FALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 530 (534)
Q Consensus 493 ~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P~~v~ 530 (534)
+++..||+||+||.-.+||||+...+.......|.+++
T Consensus 832 ~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~ 869 (3738)
T KOG1428|consen 832 ILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVS 869 (3738)
T ss_pred EEEecCCcEEEeccccCccccCccccccccccCCCcCC
Confidence 99999999999999999999998887777777787765
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.27 E-value=6.5e-12 Score=90.73 Aligned_cols=50 Identities=42% Similarity=0.711 Sum_probs=47.4
Q ss_pred CCcEEEEeCCCCCCcC-CCCCcceeeceeeccCCCCcEEEEEeCCCeEEEE
Q 009463 163 KGVVYSFGSNSSGQLG-HGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLI 212 (534)
Q Consensus 163 ~G~vy~wG~n~~GqLG-~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~L 212 (534)
||+||+||.|.+|||| .+.......|++++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7888888999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.27 E-value=7.7e-12 Score=90.33 Aligned_cols=50 Identities=42% Similarity=0.728 Sum_probs=47.7
Q ss_pred CCcEEEEECCCCCccC-CCCCCCccccEEecccCCCcEEEEEecCceEEEE
Q 009463 379 DGRVCTWGWGRYGCLG-HGNEECESVPKVVQALNDVKAIHVATGDYTTFVV 428 (534)
Q Consensus 379 ~G~vy~wG~n~~GqLG-~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~al 428 (534)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999997
No 11
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.5e-12 Score=138.37 Aligned_cols=184 Identities=28% Similarity=0.437 Sum_probs=141.0
Q ss_pred ccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecC
Q 009463 145 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 145 ~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n 224 (534)
+.+.|++||..|+++++..|++|+||.|.+||+|.+.......|.+++.+.+....+|++|..|++++..
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~---------- 83 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS---------- 83 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh----------
Confidence 4678999999999999999999999999999999985444334999999999999999999999998876
Q ss_pred CCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCc
Q 009463 225 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENI 304 (534)
Q Consensus 225 ~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 304 (534)
|+++++++|.++++|.+..+|+|.....+...|..+.. .-+.
T Consensus 84 -------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e-~i~~ 125 (850)
T KOG0941|consen 84 -------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLE-LIGS 125 (850)
T ss_pred -------------------------------------chhhcchhccccccCCcccccccccccccccccHHHHH-HHhh
Confidence 89999999999999999999999977777777777665 5567
Q ss_pred CEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecc-cCCCCcEEEEeCCcEEEEEecCCc
Q 009463 305 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ-LLNLQPVVVAAGAWHAAVVGQDGR 381 (534)
Q Consensus 305 ~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~-~~~~~i~~Ia~G~~hs~alt~~G~ 381 (534)
.+.+|+||..|+.+... .-| ++|..|.+..|. +.-.....+.+..... .....+..+.+|.+.+..+...+.
T Consensus 126 ~~t~ia~~~~ht~a~v~-~l~-qsf~~~~~~sGk---~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 126 RVTRIACVRGHTLAIVP-RLG-QSFSFGKGASGK---GVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred hhHHHHHHHHHHHhhhh-hhc-ceeecccCCCCC---ceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 79999999999988875 356 999999887771 1101111111111100 011123357788888877766553
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.02 E-value=3.8e-10 Score=71.22 Aligned_cols=30 Identities=37% Similarity=0.753 Sum_probs=25.9
Q ss_pred cEEEEeCCcEEEEEecCCcEEEEECCCCCc
Q 009463 363 PVVVAAGAWHAAVVGQDGRVCTWGWGRYGC 392 (534)
Q Consensus 363 i~~Ia~G~~hs~alt~~G~vy~wG~n~~Gq 392 (534)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 679999999999999999999999999997
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.01 E-value=4.7e-10 Score=70.78 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=26.1
Q ss_pred EEEEEeCCCeEEEEecCCcEEEEecCCCCC
Q 009463 199 IIQAAAGAGRTMLISDAGQVYAFGKDSFGE 228 (534)
Q Consensus 199 I~~Is~G~~h~~~Lt~~G~vy~wG~n~~Gq 228 (534)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.3e-11 Score=127.53 Aligned_cols=135 Identities=31% Similarity=0.573 Sum_probs=115.9
Q ss_pred CCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEe-------CCC
Q 009463 361 LQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSE-------DGD 433 (534)
Q Consensus 361 ~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~-------~G~ 433 (534)
.++++++||++|+++++..|++++||.|.+||+|.+.......|..++.+.+....+|+||..|++++.. .|.
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~ 93 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGK 93 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhcc
Confidence 3688999999999999999999999999999999995443444999999999999999999998887765 999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEE-cCCCEEEEeCCCCC
Q 009463 434 VYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALT-ESGKLYAFGAGDKG 510 (534)
Q Consensus 434 vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt-~~G~vy~wG~n~~G 510 (534)
++++|....+|+|+.. ..+...|..+..+ ....+.+|+| |..|+.+.. .-|++|.+|.+..|
T Consensus 94 ~fs~Ga~~~~q~~h~~--------~~~~~~~~~v~e~--i~~~~t~ia~-----~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 94 VFSFGAGSTGQLGHSL--------TENEVLPLLVLEL--IGSRVTRIAC-----VRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred ccccCCcccccccccc--------cccccccHHHHHH--HhhhhHHHHH-----HHHHHHhhhhhhcceeecccCCCC
Confidence 9999999999999965 4445667666666 6678999999 988999864 56999999999887
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.40 E-value=2.1 Score=45.44 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=84.9
Q ss_pred ecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecc-eeEEEeeeeCCCCeEEEeeeCCC
Q 009463 258 IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLG 336 (534)
Q Consensus 258 ~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~-~~~~~lt~~~~G~~vy~wG~n~~ 336 (534)
.|..-..||..+|++|. +-|..........-++. .....+.+|++|. .-..+++. ||.-+|--|-...
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i--~~~t~L~qISagPtg~VwAvt~--nG~vf~R~GVsRq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVI--CPYTDLSQISAGPTGVVWAVTE--NGAVFYREGVSRQ 258 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeec--CCCCccceEeecCcceEEEEee--CCcEEEEeccccc
Confidence 34555667888888873 22332222211111111 1222589999999 77788888 9956666776555
Q ss_pred ccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEE-ECCCCCccCCCCCCC-ccccEEecccCCCc
Q 009463 337 GKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTW-GWGRYGCLGHGNEEC-ESVPKVVQALNDVK 414 (534)
Q Consensus 337 gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~w-G~n~~GqLG~g~~~~-~~~P~~v~~l~~~~ 414 (534)
.+.|..-. +...|+... .++.|+.|....-+||.+|++|.= |.-..--.|...... ...-..+.......
T Consensus 259 Np~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~is 330 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCIS 330 (705)
T ss_pred CCCCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEEEecccccCcccccccccccccccceEEeccee
Confidence 55554322 333333321 378999999999999999999864 322211122222111 11111122223444
Q ss_pred EEEEEecCceEEEEEeCCCEE
Q 009463 415 AIHVATGDYTTFVVSEDGDVY 435 (534)
Q Consensus 415 i~~Va~G~~~t~alt~~G~vy 435 (534)
.+.|+.+ +|.+|+...+.+|
T Consensus 331 f~SV~~n-dqVfaisa~~~i~ 350 (705)
T KOG3669|consen 331 FQSVIHN-DQVFAISAQAKIE 350 (705)
T ss_pred eEEEEec-ceEEEEeccccee
Confidence 5555555 4556666555554
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.94 E-value=0.9 Score=53.91 Aligned_cols=246 Identities=15% Similarity=0.229 Sum_probs=121.4
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEe--------------ccC-C--Cce---EEEEE
Q 009463 198 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV--------------ESL-K--NIF---VVQAA 257 (534)
Q Consensus 198 ~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v--------------~~l-~--~~~---I~~Va 257 (534)
....|....++.++.+.+|+||.--....+. . .......|... +.+ . +.. .++=.
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~~---~--~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQD---N--EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEecccccccC---C--CcceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 5677777888999999999999865443221 1 11112222222 111 0 001 22334
Q ss_pred ecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCc
Q 009463 258 IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGG 337 (534)
Q Consensus 258 ~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~g 337 (534)
.|..|+++|+++|.=|-=|||-...|=.....- .+.+. ...+-.-+-.|..-.++|. +| +|+.|-....+
T Consensus 565 ~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~G--L~~~~----~p~~~~~ldl~r~G~v~L~---~G-~i~~wD~ttq~ 634 (1774)
T PF11725_consen 565 QGQRHSHALDEQGSQLQPGWNLSDALVLDNTRG--LPKPP----APAPHEILDLGRAGLVGLQ---DG-KIQYWDSTTQC 634 (1774)
T ss_pred CCceeeccccccCCccCCCCcccceeEeeccCC--CCCCC----CCChHHhhccccccceeec---cc-eEeeecCcchh
Confidence 577788888877777777887643332211100 00000 0000112234556667777 78 99998533221
Q ss_pred ----------cccCCCCCCCc--CceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccE
Q 009463 338 ----------KLGHGSRTDEK--HPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPK 405 (534)
Q Consensus 338 ----------qLG~g~~~~~~--~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~ 405 (534)
||-.|-....+ .--++..+. ...+--.|+-|.+|.++++.--.-+. .-.
T Consensus 635 W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~-i~~~~~~~~~g~~~~~a~~~~r~~~e------------------~G~ 695 (1774)
T PF11725_consen 635 WKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLS-INQEHPSIAHGDNNVFALPQRRNKVE------------------LGD 695 (1774)
T ss_pred hhhccCcCHHHHhccccCCceEecCCceeeee-cccCCCccccCCCcccccccccCCCC------------------CCc
Confidence 11111111110 000111100 00011123344444444332211111 113
Q ss_pred EecccCCCcEEEEEe-cCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeee
Q 009463 406 VVQALNDVKAIHVAT-GDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTN 484 (534)
Q Consensus 406 ~v~~l~~~~i~~Va~-G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~ 484 (534)
.|+.+++..|..++. +.++.++|++.|++-+.= ..-.|..++.. +....|..|++
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~---------------------k~g~p~~l~~~-gl~G~ik~l~l-- 751 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ---------------------KPGRPVPLSRP-GLSGEIKDLAL-- 751 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc---------------------CCCCCccCCCC-CCCcchhheee--
Confidence 455566666666663 779999999999886632 11124444432 23567888888
Q ss_pred cccccc-EEEEEEcCCCEEEE
Q 009463 485 SIYWNA-HTFALTESGKLYAF 504 (534)
Q Consensus 485 ~~~G~~-ht~alt~~G~vy~w 504 (534)
-.. .-+|+|.+|++|.-
T Consensus 752 ---D~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 752 ---DEKQNLYALTSTGELFRL 769 (1774)
T ss_pred ---ccccceeEecCCCceeec
Confidence 433 56789999999963
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=91.42 E-value=23 Score=37.98 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=51.5
Q ss_pred cEEEEEeCC-CeEEEEecCCcEE-EEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEE
Q 009463 198 RIIQAAAGA-GRTMLISDAGQVY-AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYT 274 (534)
Q Consensus 198 ~I~~Is~G~-~h~~~Lt~~G~vy-~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~ 274 (534)
.+.+|++|. .-..+|+.+|.|| -.|-....+.|.. -..+.+|..... ++.|+.|..-.-+||.+|++|.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gds---WkdI~tP~~a~~-----~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDS---WKDIVTPRQALE-----PVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCch---hhhccCcccccc-----eEEEEeccceEEEEecCCcEEE
Confidence 588999999 6677999999975 5676665555432 244555543322 8999999999999999999984
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=90.18 E-value=18 Score=34.73 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=62.2
Q ss_pred EEEEEe--cCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEE
Q 009463 253 VVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 330 (534)
Q Consensus 253 I~~Va~--G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~ 330 (534)
|..|.. -..+-+.-+.+|+|++|--.+.. -.....| ..+..|.+++..++-+++......| ..|+
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~------c~~~liP------e~~~~i~sl~v~~dgsml~a~nnkG-~cyv 193 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGENS------CTHELIP------EDDTSIQSLTVMPDGSMLAAANNKG-NCYV 193 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCCc------cccccCC------CCCcceeeEEEcCCCcEEEEecCCc-cEEE
Confidence 444443 33455666889999999543321 1111122 2335688888888877777665678 9999
Q ss_pred eeeCCCccccCCCCCCCcCceeeeecccCCCCcEE--EEeCCcEEEEEecCCcEEEEEC
Q 009463 331 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV--VAAGAWHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 331 wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~--Ia~G~~hs~alt~~G~vy~wG~ 387 (534)
|-.-. ........| +..++..+..|.+ .+-...|.+.-.+|-.|+.|-.
T Consensus 194 W~l~~------~~~~s~l~P--~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 194 WRLLN------HQTASELEP--VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred EEccC------CCccccceE--hhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 96321 112222222 2223223333333 3334555556666777888854
No 19
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=0.049 Score=61.31 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=91.6
Q ss_pred CceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCC--CCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCe
Q 009463 250 NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTE--PNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMA 327 (534)
Q Consensus 250 ~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~--~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~ 327 (534)
..+++.|.+-.+..++|..+|++|.|-|....-+-..-. .+...|..-...+.+.+|+.+++..-..-++|+ +| .
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~--ng-h 449 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATE--NG-H 449 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeec--CC-c
Confidence 456888888888889999999999999988655443222 223334444444778899999999988888887 88 9
Q ss_pred EEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCc
Q 009463 328 VYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGC 392 (534)
Q Consensus 328 vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~Gq 392 (534)
|.+|=. .+|.+-.... ...........+..+++.-|...|.++..+|.-+|-||--.+.+
T Consensus 450 lasWlD----EcgagV~fkL-a~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 450 LASWLD----ECGAGVAFKL-AHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hhhHHh----hhhhhhhhhh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 999842 2222211111 11111112224556777888889999999999999999755544
No 20
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=0.064 Score=60.41 Aligned_cols=132 Identities=12% Similarity=0.077 Sum_probs=85.9
Q ss_pred CCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeE-eccCCCceEEEEEecCceEEEEEcCCcEE
Q 009463 195 QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQL-VESLKNIFVVQAAIGNFFTAVLSREGRVY 273 (534)
Q Consensus 195 ~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~-v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy 273 (534)
...+++.|.+-.+..++|..+|++|.|-+...--+...-.-......|.. .-.+.+.+|+.+++..-..-++|++|+|.
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 34578888888888999999999999988754333221111122333321 12456789999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC--CCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCC
Q 009463 274 TFSWGNDARLGHHTE--PNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGL 335 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~--~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~ 335 (534)
+|=.. +|.+-. .....-+.+ ...+..+++.-|...|.++..+ |. .+|-||--.
T Consensus 452 sWlDE----cgagV~fkLa~ea~Tki--eed~~maVqd~~~adhlaAf~~--dn-iihWcGiVP 506 (3015)
T KOG0943|consen 452 SWLDE----CGAGVAFKLAHEAQTKI--EEDGEMAVQDHCCADHLAAFLE--DN-IIHWCGIVP 506 (3015)
T ss_pred hHHhh----hhhhhhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHhh--hc-eeeEEeeee
Confidence 88321 111111 111111111 2445567788888889888886 77 999999543
No 21
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.80 E-value=54 Score=34.23 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=83.1
Q ss_pred EEEEEecCc--eEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEE
Q 009463 253 VVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 330 (534)
Q Consensus 253 I~~Va~G~~--hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~ 330 (534)
+..+++... +.++=+..|++|.|--+..--|-.- . -.-..|+.+....+-+++++...|| .|.+
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----------~--aHYQ~ITcL~fs~dgs~iiTgskDg-~V~v 149 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----------S--AHYQSITCLKFSDDGSHIITGSKDG-AVLV 149 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----------H--hhccceeEEEEeCCCcEEEecCCCc-cEEE
Confidence 455555433 3344458999999964432211110 0 1112377777777777788877788 9999
Q ss_pred eeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcE--EEEE--ecCCcEEEEECCCCCccCCCCCCCccccEE
Q 009463 331 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH--AAVV--GQDGRVCTWGWGRYGCLGHGNEECESVPKV 406 (534)
Q Consensus 331 wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~h--s~al--t~~G~vy~wG~n~~GqLG~g~~~~~~~P~~ 406 (534)
|=--. | -+..+...|..+..+..-...|+++.+|..- +.++ .+|..+-.|--.. + ..-..
T Consensus 150 W~l~~---l--v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g-----~LLlt 213 (476)
T KOG0646|consen 150 WLLTD---L--VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------G-----VLLLT 213 (476)
T ss_pred EEEEe---e--cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------c-----eeeEE
Confidence 95211 0 1111122455555555566677777776542 2222 2344444453211 1 11122
Q ss_pred ecccCCCcEEEEEecCceEEEEEeCCCEEEEe
Q 009463 407 VQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 438 (534)
Q Consensus 407 v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG 438 (534)
+..+...+.+.+.-+..+.++=+++|.+|..=
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 22333334555666777888888899888754
No 22
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=84.01 E-value=4.2 Score=48.67 Aligned_cols=223 Identities=18% Similarity=0.148 Sum_probs=120.0
Q ss_pred EcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCccee---eceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCCC
Q 009463 151 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEW---RPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFG 227 (534)
Q Consensus 151 s~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~---~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~G 227 (534)
..|..|++.|.++|.=|-=|+|-.-.|=+.+..-.. .|.+- . -+-.|..-.++|. +|+|+.|-....+
T Consensus 564 ~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~------~--~ldl~r~G~v~L~-~G~i~~wD~ttq~ 634 (1774)
T PF11725_consen 564 RQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPH------E--ILDLGRAGLVGLQ-DGKIQYWDSTTQC 634 (1774)
T ss_pred cCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChH------H--hhccccccceeec-cceEeeecCcchh
Confidence 468888888888888888888865544332221111 11111 1 1234555567777 4999999876544
Q ss_pred CcccCC----------CCeeeeecCeEeccCCCceEEEEE---------ecCceEEEEEcCCcEEEEeeCCCCCCCCCCC
Q 009463 228 EAEYGV----------QGTKLVTSPQLVESLKNIFVVQAA---------IGNFFTAVLSREGRVYTFSWGNDARLGHHTE 288 (534)
Q Consensus 228 qlG~g~----------~~~~~~~~P~~v~~l~~~~I~~Va---------~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~ 288 (534)
.-..+. ++..++ |++.+|+.+. -|.+|.++++.--.-+.
T Consensus 635 W~~~~~kd~~~L~RG~D~~AYV--------Lk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e-------------- 692 (1774)
T PF11725_consen 635 WKDAGVKDIDQLKRGLDGNAYV--------LKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVE-------------- 692 (1774)
T ss_pred hhhccCcCHHHHhccccCCceE--------ecCCceeeeecccCCCccccCCCcccccccccCCCC--------------
Confidence 322221 111111 2222233322 23333333322111110
Q ss_pred CCcccccccccccCCcCEEEEEe-cceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEE
Q 009463 289 PNDVEPHPLLGTLENIPVVQIAA-GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVA 367 (534)
Q Consensus 289 ~~~~~p~~v~~~~~~~~i~~Ia~-G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia 367 (534)
.-..+.+ +++..|..++. +.++.++|.. .| ++-..= ....|..++.- ....+|.+|+
T Consensus 693 ----~G~~l~G-l~~~~i~a~Avv~~~~fvald~--qg-~lt~h~-------------k~g~p~~l~~~-gl~G~ik~l~ 750 (1774)
T PF11725_consen 693 ----LGDALEG-LEDRVITAFAVVNDNKFVALDD--QG-DLTAHQ-------------KPGRPVPLSRP-GLSGEIKDLA 750 (1774)
T ss_pred ----CCccccC-CCcCcceeEEEEcCCceEEecc--CC-cccccc-------------CCCCCccCCCC-CCCcchhhee
Confidence 0112222 45555666654 5567777775 55 443321 11125544432 2355788999
Q ss_pred eCCcE-EEEEecCCcEEE-----EECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCC
Q 009463 368 AGAWH-AAVVGQDGRVCT-----WGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG 432 (534)
Q Consensus 368 ~G~~h-s~alt~~G~vy~-----wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G 432 (534)
.-..| -+|++.+|++|. |=.+..+ .......++|..+.+.++..+....+|.+.+.-++
T Consensus 751 lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~------~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 751 LDEKQNLYALTSTGELFRLPKEAWQGNAEG------DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred eccccceeEecCCCceeecCHHHhhCcccC------CccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 98774 568899999997 4333322 11224556666667888999999999998887665
No 23
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=82.45 E-value=47 Score=36.70 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=58.4
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCc
Q 009463 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEA 229 (534)
Q Consensus 150 is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~Gql 229 (534)
++.|..|-+++ .||.|-.|..+.- .+|. .+|..|+...+-++++|.-++=..++.-+
T Consensus 138 vSVGsQHDMIV----nv~dWr~N~~~as-----------nkis----s~Vsav~fsEdgSYfvT~gnrHvk~wyl~---- 194 (1080)
T KOG1408|consen 138 VSVGSQHDMIV----NVNDWRVNSSGAS-----------NKIS----SVVSAVAFSEDGSYFVTSGNRHVKLWYLQ---- 194 (1080)
T ss_pred EeeccccceEE----Ehhhhhhcccccc-----------cccc----eeEEEEEEccCCceeeeeeeeeEEEEEee----
Confidence 67788888888 5888887764421 1111 14566666666666666554422222211
Q ss_pred ccCCCCeeeeecCeEe---ccCCCceEEEEEecCc----eEEEEEcCCcEEEEe
Q 009463 230 EYGVQGTKLVTSPQLV---ESLKNIFVVQAAIGNF----FTAVLSREGRVYTFS 276 (534)
Q Consensus 230 G~g~~~~~~~~~P~~v---~~l~~~~I~~Va~G~~----hs~~Lt~~G~vy~wG 276 (534)
.+..-...++.|-+- ..+....+.+|+||.. .+++||..|.|.-|.
T Consensus 195 -~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 195 -IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred -ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 111001122222222 2234445788999988 899999999998663
No 24
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.67 E-value=43 Score=39.55 Aligned_cols=220 Identities=13% Similarity=0.074 Sum_probs=103.2
Q ss_pred EEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCC-CCCC
Q 009463 209 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARL-GHHT 287 (534)
Q Consensus 209 ~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gql-G~~~ 287 (534)
-+.+|.|+++|.|-.++.+++-.-+.-...+..=..+..-.+..+..| .|.++|...-+|+..|--..... +...
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 456899999999999887665432211111111111111123333333 58999999999988875432211 1111
Q ss_pred CCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEE----EeeeCCCcc-ccCC----CCCCCcCceeeeeccc
Q 009463 288 EPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY----SVGCGLGGK-LGHG----SRTDEKHPRLIEQFQL 358 (534)
Q Consensus 288 ~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy----~wG~n~~gq-LG~g----~~~~~~~p~~i~~~~~ 358 (534)
..+. +....++..|..|.+-.+--++++- .|| .|| ..+.+.+++ +-.- .......|..+..+..
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G-~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAG-RDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEee-cCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 1111 1111334445555544333333331 133 222 222222332 1100 0111234553322212
Q ss_pred CCCCcEEEEeCCcEE--EEEecCCcEEEEECCCCCccCCCCCC---------CccccEEecccCCCcEEEEE------ec
Q 009463 359 LNLQPVVVAAGAWHA--AVVGQDGRVCTWGWGRYGCLGHGNEE---------CESVPKVVQALNDVKAIHVA------TG 421 (534)
Q Consensus 359 ~~~~i~~Ia~G~~hs--~alt~~G~vy~wG~n~~GqLG~g~~~---------~~~~P~~v~~l~~~~i~~Va------~G 421 (534)
....|.+|+-+.... +++++.|.|-+|-....|+-+.-... ....-..+....-.+|++|+ .-
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~ 320 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESN 320 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCccccc
Confidence 344688888886654 56778898888866555544321100 00000011111112344444 35
Q ss_pred CceEEEEEeCC-CEEEEeC
Q 009463 422 DYTTFVVSEDG-DVYSFGC 439 (534)
Q Consensus 422 ~~~t~alt~~G-~vy~wG~ 439 (534)
+-|-+|+|..| ++|.=|+
T Consensus 321 ~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 321 DLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ceeEEEEecCCeEEEEecc
Confidence 57899999998 6776663
No 25
>PLN02153 epithiospecifier protein
Probab=80.58 E-value=69 Score=32.47 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=12.3
Q ss_pred EEEEEEcCCCEEEEeCCC
Q 009463 491 HTFALTESGKLYAFGAGD 508 (534)
Q Consensus 491 ht~alt~~G~vy~wG~n~ 508 (534)
+++.+..+++||.||--.
T Consensus 307 ~~~~v~~~~~~~~~gG~~ 324 (341)
T PLN02153 307 TTATVYGKNGLLMHGGKL 324 (341)
T ss_pred cccccCCcceEEEEcCcC
Confidence 344556667899998643
No 26
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.32 E-value=47 Score=39.25 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=102.9
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCcc--eeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCC-CCcccCCC
Q 009463 158 IAVTSKGVVYSFGSNSSGQLGHGTTEE--EWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSF-GEAEYGVQ 234 (534)
Q Consensus 158 ~~l~~~G~vy~wG~n~~GqLG~g~~~~--~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~-GqlG~g~~ 234 (534)
+-++.|.++|.|=.++.+++-.-+..+ ...-..++.-++.-+-.| .|.++|..-=+|+..|-... ...+...-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCccccc
Confidence 346789999999999877765433221 111122222233333333 58999999899998885321 22112110
Q ss_pred CeeeeecCeEeccCCCceEEEEEecCceEEEEE-cCCcEEEEeeC----CCCC-CC---CC-CCCCcccccccccc-cCC
Q 009463 235 GTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS-REGRVYTFSWG----NDAR-LG---HH-TEPNDVEPHPLLGT-LEN 303 (534)
Q Consensus 235 ~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt-~~G~vy~wG~n----~~gq-lG---~~-~~~~~~~p~~v~~~-~~~ 303 (534)
.+. -.| ...+..|..|++-.+-=++++ +||.||-.-+. -.++ +- .. .......|..+..+ ...
T Consensus 169 ~~~-----~~i-~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 169 NTS-----FKI-SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred ccc-----eee-ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 000 111 122344444443333223333 44444422111 0111 00 00 00112234433322 335
Q ss_pred cCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCC-----------CCcCceeeeecccCCCCcEEEEe----
Q 009463 304 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-----------DEKHPRLIEQFQLLNLQPVVVAA---- 368 (534)
Q Consensus 304 ~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~-----------~~~~p~~i~~~~~~~~~i~~Ia~---- 368 (534)
.+|.+|+-+....+..+....| .|-+|=-..+|+-+.-... +...| .....-.+|++|+.
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~-~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~----~~~s~f~~IvsI~~l~~~ 317 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKG-TVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNP----LDDSVFFSIVSISPLSAS 317 (1311)
T ss_pred CcceeeEeccccceeeeeccCc-eEEEEEccCCCccceeeeehhHHHHHHHhhhcccc----CCCcccceeEEecccCcc
Confidence 6899999999988888775567 6666654444443221000 00111 11112224555543
Q ss_pred --CCcEEEEEecCCc-EEEEEC
Q 009463 369 --GAWHAAVVGQDGR-VCTWGW 387 (534)
Q Consensus 369 --G~~hs~alt~~G~-vy~wG~ 387 (534)
-+-|.+|+|..|. +|.=|.
T Consensus 318 es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 318 ESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccceeEEEEecCCeEEEEecc
Confidence 3449999999996 666554
No 27
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=77.10 E-value=45 Score=36.74 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=28.5
Q ss_pred CCccccccCCceeEeehhcCCCCchhhhh-hHHhhhhccC
Q 009463 45 PGEFPLAASPSIVLHVLTACNLDPQDLAK-LEATCSFFRQ 83 (534)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-l~~t~~~f~~ 83 (534)
-.|+.|.-+...|..+|.+-+|..++=.. .++..+|++.
T Consensus 171 ~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~ 210 (571)
T KOG4441|consen 171 KTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKH 210 (571)
T ss_pred ccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhc
Confidence 34555666677888899999998877777 6667777764
No 28
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=74.01 E-value=87 Score=30.16 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCcc-ccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCC
Q 009463 302 ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGK-LGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDG 380 (534)
Q Consensus 302 ~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gq-LG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G 380 (534)
.+.+|-.++.-..|.+.-- +| .||.|=+|+.-. ++.........|......+-..+....+.--.+..+.---|+
T Consensus 61 hdgpiy~~~f~d~~Lls~g---dG-~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~ 136 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLLSGG---DG-LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG 136 (325)
T ss_pred cCCCeeeeeeehhheeecc---Cc-eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe
Confidence 3446767776666654433 88 999999987766 444433334445444322222222222222222222233456
Q ss_pred cEEEEEC
Q 009463 381 RVCTWGW 387 (534)
Q Consensus 381 ~vy~wG~ 387 (534)
.+|+|-.
T Consensus 137 ~~y~~dl 143 (325)
T KOG0649|consen 137 VIYQVDL 143 (325)
T ss_pred EEEEEEe
Confidence 6777753
No 29
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.97 E-value=18 Score=34.46 Aligned_cols=29 Identities=7% Similarity=0.156 Sum_probs=24.8
Q ss_pred CCcEEEEEecCceEEEEEeCCCEEEEeCC
Q 009463 412 DVKAIHVATGDYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 412 ~~~i~~Va~G~~~t~alt~~G~vy~wG~n 440 (534)
+.+++.+.|-..+-+++|++|.+|+|--.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 34678899999999999999999999743
No 30
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=71.76 E-value=95 Score=32.49 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=42.1
Q ss_pred EEEEecCceEEEEEcCCcEEEEeeCC-CCC-CCCC---CCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeE
Q 009463 254 VQAAIGNFFTAVLSREGRVYTFSWGN-DAR-LGHH---TEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAV 328 (534)
Q Consensus 254 ~~Va~G~~hs~~Lt~~G~vy~wG~n~-~gq-lG~~---~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~v 328 (534)
+.+.-+..+.++=+++|.+|..-... .+| -|.. .......-..+.+......|..++-..+-++.+.-+.|| +|
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg-~V 301 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG-KV 301 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-CE
Confidence 33444677778888999988543221 111 0000 000001111111212224677777777778888777778 88
Q ss_pred EEeeeC
Q 009463 329 YSVGCG 334 (534)
Q Consensus 329 y~wG~n 334 (534)
-.|--.
T Consensus 302 cvWdi~ 307 (476)
T KOG0646|consen 302 CVWDIY 307 (476)
T ss_pred EEEecc
Confidence 888543
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=71.01 E-value=1e+02 Score=29.77 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=81.0
Q ss_pred cCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccC---CC----------------CCCCcCceeeeecccC--CCC
Q 009463 304 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGH---GS----------------RTDEKHPRLIEQFQLL--NLQ 362 (534)
Q Consensus 304 ~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~---g~----------------~~~~~~p~~i~~~~~~--~~~ 362 (534)
.++.-+++|++|++-+=+...| ..+--=.-..+|... .. ..+...|..+..++.. ++.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceE
Confidence 4588899999999877664555 333221112222110 00 0011223223333222 223
Q ss_pred cEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCC
Q 009463 363 PVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGES 442 (534)
Q Consensus 363 i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~ 442 (534)
.+.+.|-..-.+-=.+||.+-.|-.-. + ..++..+....+.-+-+--...+-+.-+.+|.|++|--..+
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~---~--------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRS---L--------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccC---c--------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 333344444444446777777776422 1 11111111111112223334455566688999999974432
Q ss_pred CCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCC
Q 009463 443 ASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAG 507 (534)
Q Consensus 443 gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n 507 (534)
- ....+.|... ..|.++.... -+...+|.+..|.+|+|-.=
T Consensus 157 ~--------------c~~~liPe~~-------~~i~sl~v~~---dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 157 S--------------CTHELIPEDD-------TSIQSLTVMP---DGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred c--------------cccccCCCCC-------cceeeEEEcC---CCcEEEEecCCccEEEEEcc
Confidence 1 1222333222 3344554410 23567788999999999753
No 32
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.41 E-value=25 Score=33.42 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCeEEEEecCCcEEEEecC
Q 009463 197 IRIIQAAAGAGRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 197 ~~I~~Is~G~~h~~~Lt~~G~vy~wG~n 224 (534)
.+++.+.|-+.+.++||++|.+|+|--.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 3688899999999999999999999654
No 33
>PHA03098 kelch-like protein; Provisional
Probab=68.77 E-value=1.2e+02 Score=32.93 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=11.5
Q ss_pred eEEEEecCCcEEEEecCC
Q 009463 208 RTMLISDAGQVYAFGKDS 225 (534)
Q Consensus 208 h~~~Lt~~G~vy~wG~n~ 225 (534)
|+++ .-+|+||.+|-..
T Consensus 336 ~~~~-~~~~~lyv~GG~~ 352 (534)
T PHA03098 336 PGVT-VFNNRIYVIGGIY 352 (534)
T ss_pred ceEE-EECCEEEEEeCCC
Confidence 4443 4478999999643
No 34
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=67.21 E-value=12 Score=23.86 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.1
Q ss_pred ccceEEEcCC-CeEEEEEcCCcEEEE
Q 009463 145 RENSQAIAGP-GHSIAVTSKGVVYSF 169 (534)
Q Consensus 145 ~~i~~is~G~-~h~~~l~~~G~vy~w 169 (534)
.++++|++|. ....+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5678899999 788899999999863
No 35
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.02 E-value=72 Score=31.35 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=75.5
Q ss_pred cCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCC---eEEEEecCCcEEEEecC-CCC
Q 009463 152 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG---RTMLISDAGQVYAFGKD-SFG 227 (534)
Q Consensus 152 ~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~---h~~~Lt~~G~vy~wG~n-~~G 227 (534)
-+.-|-++...||.||.-+.. .|.+|+-+ | ..-+++.+..|.. |.+++..||..|.+-.. .-+
T Consensus 61 G~ap~dvapapdG~VWft~qg-~gaiGhLd------P------~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQG-TGAIGHLD------P------ATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CCCccccccCCCCceEEecCc-cccceecC------C------CCCceEEEecCCCCCCceEEECCCCCeeEecCcceeE
Confidence 345677888899999977654 34444322 1 1114555555433 78888888888887543 112
Q ss_pred CcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCC-CCCCCCCCCCCcccccccccccCCcCE
Q 009463 228 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGN-DARLGHHTEPNDVEPHPLLGTLENIPV 306 (534)
Q Consensus 228 qlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~-~gqlG~~~~~~~~~p~~v~~~~~~~~i 306 (534)
.++...-..+....| .+.+-++-.+++++.+|+||.-|.+. +|+|--........|.+.
T Consensus 128 R~dpkt~evt~f~lp-----------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------- 187 (353)
T COG4257 128 RLDPKTLEVTRFPLP-----------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--------- 187 (353)
T ss_pred EecCcccceEEeecc-----------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC---------
Confidence 221111011111111 22334556789999999999877643 555433222222222221
Q ss_pred EEEEecceeEEEeeeeCCCCeEEEe
Q 009463 307 VQIAAGYCYLLALACQPSGMAVYSV 331 (534)
Q Consensus 307 ~~Ia~G~~~~~~lt~~~~G~~vy~w 331 (534)
-+.-+.++.+- || +||.-
T Consensus 188 ----G~gpyGi~atp--dG-svwya 205 (353)
T COG4257 188 ----GGGPYGICATP--DG-SVWYA 205 (353)
T ss_pred ----CCCCcceEECC--CC-cEEEE
Confidence 12334556664 99 98875
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=64.93 E-value=1.2e+02 Score=28.16 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=46.3
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCC--CeEEEEecCCcEEEEecCCCCCcccC
Q 009463 155 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYG 232 (534)
Q Consensus 155 ~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~--~h~~~Lt~~G~vy~wG~n~~GqlG~g 232 (534)
...+....+|.++.|-..... ....+.. ....+..+..-. ...++...+|.|+.|-......
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---- 85 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGE-----------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC---- 85 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCC-----------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc----
Confidence 334444568999999654311 0111111 112333443332 3455556688888886543210
Q ss_pred CCCeeeeecCeEeccCCCceEEEEEecCc-eEEEEEc-CCcEEEEeeC
Q 009463 233 VQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSR-EGRVYTFSWG 278 (534)
Q Consensus 233 ~~~~~~~~~P~~v~~l~~~~I~~Va~G~~-hs~~Lt~-~G~vy~wG~n 278 (534)
...+.. ....|..+..... ..++... +|.|+.|-..
T Consensus 86 ---------~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 86 ---------VRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred ---------eEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 111111 1223555554443 3344444 8899988543
No 37
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=63.30 E-value=13 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.3
Q ss_pred cEEEEEeCC-CeEEEEecCCcEEEE
Q 009463 198 RIIQAAAGA-GRTMLISDAGQVYAF 221 (534)
Q Consensus 198 ~I~~Is~G~-~h~~~Lt~~G~vy~w 221 (534)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 799999999 888899999999863
No 38
>PHA03098 kelch-like protein; Provisional
Probab=62.26 E-value=2.3e+02 Score=30.63 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=10.6
Q ss_pred EEEecCCcEEEEecC
Q 009463 210 MLISDAGQVYAFGKD 224 (534)
Q Consensus 210 ~~Lt~~G~vy~wG~n 224 (534)
.++.-++.||..|-.
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 345567899999953
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=61.63 E-value=1.5e+02 Score=28.66 Aligned_cols=121 Identities=14% Similarity=0.051 Sum_probs=57.9
Q ss_pred ecCeEeccCCCceEEE-EEecCceEEEE-EcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEE
Q 009463 240 TSPQLVESLKNIFVVQ-AAIGNFFTAVL-SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLL 317 (534)
Q Consensus 240 ~~P~~v~~l~~~~I~~-Va~G~~hs~~L-t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~ 317 (534)
..|+.+..-.+. |+. +-|-..|++.- ++++.|-.|-.-. -+.+.....+.+|.+.....+--+
T Consensus 134 App~E~~ghtg~-Ir~v~wc~eD~~iLSSadd~tVRLWD~rT--------------gt~v~sL~~~s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 134 APPKEISGHTGG-IRTVLWCHEDKCILSSADDKTVRLWDHRT--------------GTEVQSLEFNSPVTSLEVSQDGRI 198 (334)
T ss_pred CCchhhcCCCCc-ceeEEEeccCceEEeeccCCceEEEEecc--------------CcEEEEEecCCCCcceeeccCCCE
Confidence 345555443332 333 45666676665 7889999884322 111211122223333333222222
Q ss_pred EeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCC
Q 009463 318 ALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRY 390 (534)
Q Consensus 318 ~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~ 390 (534)
+.+. +|..|--|-.+..+.|- ....|..|........+ -...||. +++.+|.+-.+.-
T Consensus 199 lTia--~gssV~Fwdaksf~~lK-----s~k~P~nV~SASL~P~k-~~fVaGg-------ed~~~~kfDy~Tg 256 (334)
T KOG0278|consen 199 LTIA--YGSSVKFWDAKSFGLLK-----SYKMPCNVESASLHPKK-EFFVAGG-------EDFKVYKFDYNTG 256 (334)
T ss_pred EEEe--cCceeEEecccccccee-----eccCccccccccccCCC-ceEEecC-------cceEEEEEeccCC
Confidence 2222 55577778766666552 34556666543333322 2233333 4666777766543
No 40
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=58.99 E-value=1.6 Score=30.21 Aligned_cols=26 Identities=38% Similarity=0.814 Sum_probs=21.1
Q ss_pred eeEeehhcCCCCchhhhhhHHhhhhccC
Q 009463 56 IVLHVLTACNLDPQDLAKLEATCSFFRQ 83 (534)
Q Consensus 56 ~~~~~~~~~~l~~~d~~~l~~t~~~f~~ 83 (534)
++++|+.- |+++|+.+++.+|+.|++
T Consensus 8 il~~If~~--L~~~dl~~~~~vcr~w~~ 33 (47)
T PF12937_consen 8 ILLEIFSY--LDPRDLLRLSLVCRRWRR 33 (47)
T ss_dssp HHHHHHTT--S-HHHHHHHTTSSHHHHH
T ss_pred HHHHHHhc--CCHHHHHHHHHHHHHHHH
Confidence 66777754 799999999999999984
No 41
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=58.65 E-value=2.4e+02 Score=29.59 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=41.5
Q ss_pred CcEEEEEe-CCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEec--cCCCceEEEEEecCceEEEEEcCCcEE
Q 009463 197 IRIIQAAA-GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVE--SLKNIFVVQAAIGNFFTAVLSREGRVY 273 (534)
Q Consensus 197 ~~I~~Is~-G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~--~l~~~~I~~Va~G~~hs~~Lt~~G~vy 273 (534)
.+|+.+.- -..+.++|+++|.++..- -+|.. ....+..+. ...+.++-.+..+.+-.++||.++++|
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~--------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~ 150 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF--------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY 150 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce--------eechhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence 46777764 345788999999988763 33332 111122221 122333444455666688999999999
Q ss_pred EE
Q 009463 274 TF 275 (534)
Q Consensus 274 ~w 275 (534)
.-
T Consensus 151 ~v 152 (410)
T PF04841_consen 151 VV 152 (410)
T ss_pred EE
Confidence 76
No 42
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=54.16 E-value=1.6e+02 Score=32.36 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=15.3
Q ss_pred EeCCcEEEEEecCCcEEEEEC
Q 009463 367 AAGAWHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 367 a~G~~hs~alt~~G~vy~wG~ 387 (534)
.....+.-+..-+|++|+-|-
T Consensus 510 ~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 510 TSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ccccccccEEEECCEEEEEec
Confidence 345556666777899999985
No 43
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=53.86 E-value=4e+02 Score=30.74 Aligned_cols=210 Identities=12% Similarity=0.022 Sum_probs=98.3
Q ss_pred cCCCeEEEEEcCCcEEEEeCCCC---CCcCCCCCcceeeceeeccCCCCcEEEEEeC-----CCeEEEEecCCcEEEEec
Q 009463 152 AGPGHSIAVTSKGVVYSFGSNSS---GQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAFGK 223 (534)
Q Consensus 152 ~G~~h~~~l~~~G~vy~wG~n~~---GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G-----~~h~~~Lt~~G~vy~wG~ 223 (534)
....+.+++|++|++|..=...- +..+.|. .....++..++.+|+.+.+- ....+++|.+|.+--.=.
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~----~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l 619 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK----PIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSL 619 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc----CHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEh
Confidence 45566889999999999833221 1111111 11112233456678877662 235788899998776543
Q ss_pred CCCCC---cccCCCCeeeeecCeEeccCCCceEEEEEe--cCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccc
Q 009463 224 DSFGE---AEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 298 (534)
Q Consensus 224 n~~Gq---lG~g~~~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 298 (534)
+.+-. .|.. .+..-.+..++.+.. ...+.+++|++|++|.+-...--..|...... ...
T Consensus 620 ~~~~~~~r~G~~-----------aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv-----~~i 683 (800)
T TIGR01063 620 TEFSNIRSNGII-----------AIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGV-----RGI 683 (800)
T ss_pred HHhhhhccCCcc-----------cccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCe-----ecc
Confidence 33211 1110 010111233444333 44568999999999988554433333222111 111
Q ss_pred cccCCcCEEEEEec--ceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEE--EeCCcEEE
Q 009463 299 GTLENIPVVQIAAG--YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAA 374 (534)
Q Consensus 299 ~~~~~~~i~~Ia~G--~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~I--a~G~~hs~ 374 (534)
..-++.+|+.+.+- ..+.+++|+ +| .+.-.-...+-....+ ......-.+...+..++.+ .......+
T Consensus 684 ~L~~~E~Vv~~~~v~~~~~ll~vT~--~G-~~Kr~~l~e~~~~~R~-----~kGv~~ikl~~~~d~lv~~~~v~~~~~v~ 755 (800)
T TIGR01063 684 KLKNEDFVVSLLVVSEESYLLIVTE--NG-YGKRTSIEEYRETSRG-----GKGVKSIKITDRNGQVVGAIAVDDDDELM 755 (800)
T ss_pred cCCCCCEEEEEEEeccccEEEEEec--CC-cEEEEEHHHccccCCC-----CcceEEEEccCCCCeEEEEEEecCCCeEE
Confidence 11234456655442 224555564 56 4443321111100000 0011111111111233322 23445688
Q ss_pred EEecCCcEEEEECCC
Q 009463 375 VVGQDGRVCTWGWGR 389 (534)
Q Consensus 375 alt~~G~vy~wG~n~ 389 (534)
++|++|.+..+-.++
T Consensus 756 liT~~G~~lrf~~~e 770 (800)
T TIGR01063 756 LITSAGKLIRTSVQD 770 (800)
T ss_pred EEecCCeEEEeeHhh
Confidence 888888887776544
No 44
>PHA02713 hypothetical protein; Provisional
Probab=53.58 E-value=2e+02 Score=31.53 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=12.9
Q ss_pred CeEEEEecCCcEEEEecC
Q 009463 207 GRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 207 ~h~~~Lt~~G~vy~wG~n 224 (534)
.+..+..-+|+||++|-.
T Consensus 343 ~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hceeEEEECCEEEEECCc
Confidence 344455668999999974
No 45
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=52.40 E-value=3.5e+02 Score=31.08 Aligned_cols=29 Identities=17% Similarity=-0.012 Sum_probs=20.6
Q ss_pred CCcCEEEEEecceeEEEeeeeCCCC-eEEEee
Q 009463 302 ENIPVVQIAAGYCYLLALACQPSGM-AVYSVG 332 (534)
Q Consensus 302 ~~~~i~~Ia~G~~~~~~lt~~~~G~-~vy~wG 332 (534)
.+..|..|++-.+|.+.-++ ++. .+|.++
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~--~~tv~~y~fp 84 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSE--QNTVLRYKFP 84 (933)
T ss_pred cCceeEEEeecccceEEeec--cceEEEeeCC
Confidence 56679999998888877776 552 455554
No 46
>PRK05560 DNA gyrase subunit A; Validated
Probab=51.17 E-value=4.4e+02 Score=30.44 Aligned_cols=214 Identities=12% Similarity=0.074 Sum_probs=101.3
Q ss_pred cCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeec--eeeccCCCCcEEEEEeCC-----CeEEEEecCCcEEEEecC
Q 009463 152 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAGA-----GRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 152 ~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P--~~v~~~~~~~I~~Is~G~-----~h~~~Lt~~G~vy~wG~n 224 (534)
....+.+++|+.|++|..=... +-.......-.| ..++..++.+|+.+.+-. ...+++|++|.+--.-.+
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 4556688999999999886542 211110111111 123334566888887754 357889999977655433
Q ss_pred CCCCcccCCCCeeeeecCeEeccCCCceEEEEEe--cCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccC
Q 009463 225 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 302 (534)
Q Consensus 225 ~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 302 (534)
.+-....+ -...+..-.+..++.+.. ...+.+++|++|++|.+-...--..|.... ...+...-+
T Consensus 623 ~~~~~~r~--------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~ 689 (805)
T PRK05560 623 EFSNIRSN--------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLRE 689 (805)
T ss_pred HhhhcccC--------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCC
Confidence 22110000 001111112334444433 445689999999999875443222222111 111111123
Q ss_pred CcCEEEEEecc---eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEE--EeCCcEEEEEe
Q 009463 303 NIPVVQIAAGY---CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVVG 377 (534)
Q Consensus 303 ~~~i~~Ia~G~---~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~I--a~G~~hs~alt 377 (534)
+.+|+.+.+.. .+.+++|+ +| .+.-.-.+.+-....+ ......-.+...+..++.+ ..+....+++|
T Consensus 690 ~E~Vv~~~~v~~~~~~il~vTk--~G-~iKr~~l~e~~~~~R~-----~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T 761 (805)
T PRK05560 690 GDEVVSMDVVREDSQEILTVTE--NG-YGKRTPVSEYRLQGRG-----GKGVITIKITEKNGKLVGALPVDDDDEIMLIT 761 (805)
T ss_pred CCEEEEEEEEcCCCcEEEEEEe--CC-eEEEEEHHHhhccCCC-----CCcEEeeeccCCCCeEEEEEEecCCCeEEEEe
Confidence 44566555432 24566665 56 4443321111100000 0011111111112233332 33455688889
Q ss_pred cCCcEEEEECCC
Q 009463 378 QDGRVCTWGWGR 389 (534)
Q Consensus 378 ~~G~vy~wG~n~ 389 (534)
.+|++..+-.++
T Consensus 762 ~~G~~lrf~~~e 773 (805)
T PRK05560 762 DSGKLIRTRVSE 773 (805)
T ss_pred cCCeEEEEEHHH
Confidence 999888776544
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.11 E-value=3.1e+02 Score=28.59 Aligned_cols=175 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCce---EEEEEecCc--eEEEEEcCCcEEEEeeCCC
Q 009463 206 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIF---VVQAAIGNF--FTAVLSREGRVYTFSWGND 280 (534)
Q Consensus 206 ~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~---I~~Va~G~~--hs~~Lt~~G~vy~wG~n~~ 280 (534)
+.+.+.=..|+.++.|+-+ -..+...++.+ |.+++.... ..++++.|-++..+
T Consensus 324 g~~~V~Gs~dr~i~~wdlD-----------------gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~----- 381 (519)
T KOG0293|consen 324 GFRFVTGSPDRTIIMWDLD-----------------GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLY----- 381 (519)
T ss_pred CceeEecCCCCcEEEecCC-----------------cchhhcccccccceeEEEEEcCCCcEEEEEecccceeee-----
Q ss_pred CCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCC
Q 009463 281 ARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLN 360 (534)
Q Consensus 281 gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~ 360 (534)
+......+....+..+|..++-..+.-++|+.-.+. ++..| +......+++-..-....
T Consensus 382 ---------~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q-ei~LW-----------Dl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 382 ---------NREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ-EIHLW-----------DLEENKLVRKYFGHKQGH 440 (519)
T ss_pred ---------chhhhhhhccccccCceeEEEEcCCCcEEEEEcccC-eeEEe-----------ecchhhHHHHhhcccccc
Q ss_pred CCcEEEEeCCcEEEEE--ecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecC------ceEEEEEeCC
Q 009463 361 LQPVVVAAGAWHAAVV--GQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD------YTTFVVSEDG 432 (534)
Q Consensus 361 ~~i~~Ia~G~~hs~al--t~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~------~~t~alt~~G 432 (534)
.-|.+...|.+-.++. ++|++||.|- ...-..+..+.+ ....|-|=. +..+--.+||
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWh--------------r~sgkll~~LsG-Hs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWH--------------RISGKLLAVLSG-HSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEE--------------ccCCceeEeecC-CcceeeEEecCCCCHHHhhccCCCC
Q ss_pred CEEEEe
Q 009463 433 DVYSFG 438 (534)
Q Consensus 433 ~vy~wG 438 (534)
+|-.||
T Consensus 506 tIRIWg 511 (519)
T KOG0293|consen 506 TIRIWG 511 (519)
T ss_pred eEEEec
No 48
>PLN02153 epithiospecifier protein
Probab=50.42 E-value=2.8e+02 Score=27.95 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=11.9
Q ss_pred CeEEEEecCCcEEEEecC
Q 009463 207 GRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 207 ~h~~~Lt~~G~vy~wG~n 224 (534)
.|++++ .+++||.+|--
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 455554 56899999864
No 49
>PHA02713 hypothetical protein; Provisional
Probab=47.40 E-value=4.2e+02 Score=29.07 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=10.3
Q ss_pred EEEEeCCCEEEEeC
Q 009463 426 FVVSEDGDVYSFGC 439 (534)
Q Consensus 426 ~alt~~G~vy~wG~ 439 (534)
.+..-+|+||+.|-
T Consensus 458 ~~~~~~~~IYv~GG 471 (557)
T PHA02713 458 GVVSHKDDIYVVCD 471 (557)
T ss_pred cEEEECCEEEEEeC
Confidence 34456789999994
No 50
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=45.94 E-value=3.6e+02 Score=27.83 Aligned_cols=64 Identities=16% Similarity=0.330 Sum_probs=34.8
Q ss_pred cEEEEEeCCC-eE-EEEecCCc-EEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCc-eEEEEEcCCcEE
Q 009463 198 RIIQAAAGAG-RT-MLISDAGQ-VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGRVY 273 (534)
Q Consensus 198 ~I~~Is~G~~-h~-~~Lt~~G~-vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~-hs~~Lt~~G~vy 273 (534)
.+..|..|.. |. ++.+.||+ +|+.+.+ |.+ ..+.......+..|..|.. +.++++.||+..
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~v-------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTV-------------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEE-------------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeE-------------EEEECCcccEEEEEecCCCcceEEEcCCCCEE
Confidence 4667776655 55 45678887 7887542 322 1233344556777887765 678899999854
Q ss_pred EEe
Q 009463 274 TFS 276 (534)
Q Consensus 274 ~wG 276 (534)
.-+
T Consensus 93 ~v~ 95 (369)
T PF02239_consen 93 YVA 95 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 51
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=40.13 E-value=1e+02 Score=30.39 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=71.2
Q ss_pred hcCCCcceeeEeeeccceeecccceEEEcCC---CeEEEEEcCCcEEEEeCC-CCCCcCCCCCcceeeceeeccCCCCcE
Q 009463 124 KCGGSWKLVLRFLLAGEACCRRENSQAIAGP---GHSIAVTSKGVVYSFGSN-SSGQLGHGTTEEEWRPRPIRSLQGIRI 199 (534)
Q Consensus 124 ~~g~sw~~~l~~~~~~~~~~~~~i~~is~G~---~h~~~l~~~G~vy~wG~n-~~GqLG~g~~~~~~~P~~v~~~~~~~I 199 (534)
++..+|..++..+... ..++.++..|. -|.+++..||..|..-.. .-++++-.+.+-..-|.+
T Consensus 76 Wft~qg~gaiGhLdP~----tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp--------- 142 (353)
T COG4257 76 WFTAQGTGAIGHLDPA----TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP--------- 142 (353)
T ss_pred EEecCccccceecCCC----CCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecc---------
Confidence 3455666666654432 23555565544 578999999999998654 333333222111111222
Q ss_pred EEEEeCCCeEEEEecCCcEEEEecC-CCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEE
Q 009463 200 IQAAAGAGRTMLISDAGQVYAFGKD-SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTF 275 (534)
Q Consensus 200 ~~Is~G~~h~~~Lt~~G~vy~wG~n-~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~w 275 (534)
.+.+-+.-.+..++.+|+||..|.+ .+|.|.......+....|+ -+.-..++.|-||+||.-
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--------------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--------------CCCCcceEECCCCcEEEE
Confidence 2233445568889999999999986 3455543322222222221 123356788999999954
No 52
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=39.10 E-value=2.4e+02 Score=28.42 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=36.4
Q ss_pred EEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceE--EEEEeCCCEEEEeC
Q 009463 374 AVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTT--FVVSEDGDVYSFGC 439 (534)
Q Consensus 374 ~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t--~alt~~G~vy~wG~ 439 (534)
++..+.|+||+|-... .+....++......+..|.+.+-..+-+ ++++++|.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3446789999997532 1222445555555555666666555444 55678999999864
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=38.38 E-value=3.2e+02 Score=25.11 Aligned_cols=108 Identities=9% Similarity=-0.070 Sum_probs=50.4
Q ss_pred cEEEEEeCC--CeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecC--ceEEEEEcCCcEE
Q 009463 198 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVY 273 (534)
Q Consensus 198 ~I~~Is~G~--~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~--~hs~~Lt~~G~vy 273 (534)
.|..++... ...++...+|.++.|-...... ..... .....+..+..-. .+.++...+|.|+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------LRTLK-GHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------EEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 455554433 3444555688998886542210 01111 1112233333322 3455566689999
Q ss_pred EEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeee
Q 009463 274 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 333 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~ 333 (534)
.|-...... ...+. .....|..+.......++++...+| .|+.|-.
T Consensus 77 i~~~~~~~~-----------~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~ 122 (289)
T cd00200 77 LWDLETGEC-----------VRTLT--GHTSYVSSVAFSPDGRILSSSSRDK-TIKVWDV 122 (289)
T ss_pred EEEcCcccc-----------eEEEe--ccCCcEEEEEEcCCCCEEEEecCCC-eEEEEEC
Confidence 885443210 11111 1122455555554434444442366 8888854
No 54
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=37.01 E-value=39 Score=22.24 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.9
Q ss_pred cEEEEEecCCcEEEEECCC
Q 009463 371 WHAAVVGQDGRVCTWGWGR 389 (534)
Q Consensus 371 ~hs~alt~~G~vy~wG~n~ 389 (534)
-+.++++.+|.+|+-|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999743
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=36.21 E-value=4.9e+02 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=14.9
Q ss_pred EEEEecCCcEEEEecCCCCC
Q 009463 209 TMLISDAGQVYAFGKDSFGE 228 (534)
Q Consensus 209 ~~~Lt~~G~vy~wG~n~~Gq 228 (534)
.+|=++||.||+|--++.++
T Consensus 163 llAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred EEeecCCCcEEEEECCCcce
Confidence 44567899999998776443
No 56
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=33.17 E-value=6.9e+02 Score=27.45 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=14.6
Q ss_pred ecCceEEEEEcCCcEEEE
Q 009463 258 IGNFFTAVLSREGRVYTF 275 (534)
Q Consensus 258 ~G~~hs~~Lt~~G~vy~w 275 (534)
.-.+|.++-|++|.||.+
T Consensus 358 ~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred CCCceEEEEcCCcEEEEE
Confidence 345688999999999974
No 57
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=32.98 E-value=9.5e+02 Score=28.99 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=44.1
Q ss_pred cceEEEcCCCe-EEEEE--cCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEE-eCCCeEEEE-ecCCcEEE
Q 009463 146 ENSQAIAGPGH-SIAVT--SKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA-AGAGRTMLI-SDAGQVYA 220 (534)
Q Consensus 146 ~i~~is~G~~h-~~~l~--~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is-~G~~h~~~L-t~~G~vy~ 220 (534)
.+.+++....| +++++ .||.|-+|-.-. -.|.+. ..+..-+- .+.+.++.++. |+..+.+|+ ++||.|-.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~-s~rS~lty--s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGG-SARSELTY--SPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehh--hhcCcc-eeeeeEEE--eccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 44567888888 77777 789999996433 233321 11111111 11344566663 555554443 78899888
Q ss_pred EecCCC
Q 009463 221 FGKDSF 226 (534)
Q Consensus 221 wG~n~~ 226 (534)
.+-+.+
T Consensus 1125 ~~id~~ 1130 (1431)
T KOG1240|consen 1125 LRIDHY 1130 (1431)
T ss_pred EEcccc
Confidence 876653
No 58
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=32.76 E-value=1.2e+02 Score=18.49 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.1
Q ss_pred ceEEEEEecCceEEEEEcCCcEEE
Q 009463 251 IFVVQAAIGNFFTAVLSREGRVYT 274 (534)
Q Consensus 251 ~~I~~Va~G~~hs~~Lt~~G~vy~ 274 (534)
+.|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 468999999999999998886654
No 59
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=32.72 E-value=8e+02 Score=28.56 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=33.4
Q ss_pred EEEEcCCcEEEEeCCCCCCcC-CCCCcc-eeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEec
Q 009463 158 IAVTSKGVVYSFGSNSSGQLG-HGTTEE-EWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK 223 (534)
Q Consensus 158 ~~l~~~G~vy~wG~n~~GqLG-~g~~~~-~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~ 223 (534)
+-+|.|.+++.|-.|+....- .++... ...-..++.-++.-+.. -.|.+++...-++|..|-
T Consensus 96 cWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~----i~hlL~vAT~~e~~ilgv 159 (1263)
T COG5308 96 CWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSR----ISHLLFVATEKEVMILGV 159 (1263)
T ss_pred eEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHh----hhhhhhhhhhheeeEEEE
Confidence 467899999999987532211 111111 11111222222222222 258888888889998885
No 60
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=32.12 E-value=1.1e+02 Score=30.85 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=38.8
Q ss_pred EcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCC--eEEEEecCCcEEEEec
Q 009463 161 TSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAFGK 223 (534)
Q Consensus 161 ~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~--h~~~Lt~~G~vy~wG~ 223 (534)
...|+||+|---.. ++...++......+..|.|.+...+ ..++++++|.||.|-.
T Consensus 326 nq~g~v~vwdL~~~--------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNN--------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCCC--------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 58899999974321 2224456666667778888887655 4557789999999954
No 61
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=31.80 E-value=6.2e+02 Score=26.49 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=41.7
Q ss_pred ccceEEEc-CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeec--cCCCCcEEEEEeCCCeEEEEecCCcEEEE
Q 009463 145 RENSQAIA-GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIR--SLQGIRIIQAAAGAGRTMLISDAGQVYAF 221 (534)
Q Consensus 145 ~~i~~is~-G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~--~~~~~~I~~Is~G~~h~~~Lt~~G~vy~w 221 (534)
.+|+.+.. -..+.++|.+||.|+.. +-.|.. ....+..+. ...+.++-.+..+..-.++||.++++|..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy--~~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVY--DLFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEE--eCCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 34555543 34578899999998876 333433 111122221 11223444556665668899999999988
Q ss_pred ec
Q 009463 222 GK 223 (534)
Q Consensus 222 G~ 223 (534)
=.
T Consensus 153 ~n 154 (410)
T PF04841_consen 153 NN 154 (410)
T ss_pred eC
Confidence 43
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=31.09 E-value=3.2e+02 Score=27.83 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=11.0
Q ss_pred ceEEEEEcCCcEEEE
Q 009463 261 FFTAVLSREGRVYTF 275 (534)
Q Consensus 261 ~hs~~Lt~~G~vy~w 275 (534)
.+.++.+.||+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 456777888888865
No 63
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.97 E-value=1e+03 Score=28.09 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=24.4
Q ss_pred CceEEEEEecCce--EEEEEcCCcEEEEeeCC
Q 009463 250 NIFVVQAAIGNFF--TAVLSREGRVYTFSWGN 279 (534)
Q Consensus 250 ~~~I~~Va~G~~h--s~~Lt~~G~vy~wG~n~ 279 (534)
...|.+|+....+ .++++.+|.|+.|-+..
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 3458999998888 79999999988886544
No 64
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=28.89 E-value=28 Score=22.46 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=20.3
Q ss_pred eeEeehhcCCCCchhhhhhHHhhhhccC
Q 009463 56 IVLHVLTACNLDPQDLAKLEATCSFFRQ 83 (534)
Q Consensus 56 ~~~~~~~~~~l~~~d~~~l~~t~~~f~~ 83 (534)
++.+|+ ..|+++|+.+++.+|+.|+.
T Consensus 5 ll~~I~--~~l~~~d~~~~~~vc~~~~~ 30 (41)
T smart00256 5 ILEEIL--SKLPPKDLLRLRKVSRRWRS 30 (41)
T ss_pred HHHHHH--HcCCHHHHHHHHHHHHHHHH
Confidence 444555 36788999999999999884
No 65
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=28.71 E-value=9.2e+02 Score=27.53 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=69.0
Q ss_pred EeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEE--ecccCCCcEEEEEecCc--eEEEEEeCCCEEEEeCCCC
Q 009463 367 AAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKV--VQALNDVKAIHVATGDY--TTFVVSEDGDVYSFGCGES 442 (534)
Q Consensus 367 a~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~--v~~l~~~~i~~Va~G~~--~t~alt~~G~vy~wG~n~~ 442 (534)
+....+.+++|++|++|.+-.++-- .|. ....|.. +....+.+|+.+.+... +-+++|+.|.....=..++
T Consensus 533 ~~t~d~LllfTs~Gr~yrf~v~eIP-~GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~ 607 (735)
T TIGR01062 533 GKSNQKVVFIDSTGRSYALDPDNLP-SAR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDL 607 (735)
T ss_pred ecCCCEEEEEECCCeEEEEEhHhcC-cCc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhc
Confidence 3345578999999999999765431 122 1223322 33345667888777653 4677888886666553333
Q ss_pred CCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccc-cEEEEEEcCCCEEEEeCCCCCCCCC
Q 009463 443 ASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWN-AHTFALTESGKLYAFGAGDKGQLGI 514 (534)
Q Consensus 443 gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~-~ht~alt~~G~vy~wG~n~~GqLG~ 514 (534)
-....+. ..+..+.. +..++.+... .+. .+.+++|++|++..+-.++--++|.
T Consensus 608 ~~~~RaG---------------Kgvi~Lk~-~d~lv~v~~v---~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 608 IARNKAG---------------KALINLPE-NASVIAPLPV---NGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred cccCcCC---------------eEEEEeCC-CCEEEEEEEE---cCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 2211111 11111211 2233332221 133 3577899999999998776666655
No 66
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=28.61 E-value=3.9e+02 Score=26.09 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC-----CCeEEEEecCCcEEEE
Q 009463 153 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAF 221 (534)
Q Consensus 153 G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G-----~~h~~~Lt~~G~vy~w 221 (534)
+..+.++-|++|.||..-...+..+ .-..++. ..+.=.+.| ++..++.+.||.||.-
T Consensus 194 a~scLViGTE~~~i~iLd~~af~il---------~~~~lps---vPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 194 AVSCLVIGTESGEIYILDPQAFTIL---------KQVQLPS---VPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CcceEEEEecCCeEEEECchhheeE---------EEEecCC---CceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 3456667789999999865543222 1112211 112212223 2346778899999863
No 67
>PRK05560 DNA gyrase subunit A; Validated
Probab=28.56 E-value=9.7e+02 Score=27.72 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=104.9
Q ss_pred EecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccc--ccccccCCcCEEEEEecc-----eeEEEeeeeCCCCeEE
Q 009463 257 AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH--PLLGTLENIPVVQIAAGY-----CYLLALACQPSGMAVY 329 (534)
Q Consensus 257 a~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~--~v~~~~~~~~i~~Ia~G~-----~~~~~lt~~~~G~~vy 329 (534)
+....+.+++|+.|++|..-...--..+ ....-.|. .+. ...+.+|+.+.+-. ...+++++ +| .+.
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~---~~~~G~~i~~ll~-L~~~E~Iv~~i~~~~~~~e~~lvlvTk--~G-yiK 617 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEAS---RTARGRPIVNLLP-LEPGEKITAILPVREFDDDKYLFFATK--NG-TVK 617 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCC---cCCCCeEHHHhcC-CCCCceEEEEEeccCCCCCCEEEEEeC--CC-EEE
Confidence 3455668889999999977544221111 11111111 111 13456677766644 34566665 77 554
Q ss_pred EeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEE--EeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEE-
Q 009463 330 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKV- 406 (534)
Q Consensus 330 ~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~I--a~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~- 406 (534)
-.-.+.+-....+ ....-.+. .+..++.+ +....+.+++|++|++|.+=..+--..|.... +..
T Consensus 618 Ri~l~~~~~~~r~-------G~~~ikLk-e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~ 684 (805)
T PRK05560 618 KTSLSEFSNIRSN-------GIIAINLD-EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRG 684 (805)
T ss_pred EEEhHHhhhcccC-------CceeeccC-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----Cccc
Confidence 3321111100000 11111111 12233333 33345789999999999886544322222211 111
Q ss_pred ecccCCCcEEEEEecC---ceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEee
Q 009463 407 VQALNDVKAIHVATGD---YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLT 483 (534)
Q Consensus 407 v~~l~~~~i~~Va~G~---~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~ 483 (534)
+..-.+.+|+.+.+.. .+.+++|++|.+.-.=..++-....+. .....-.+...+..++.+...
T Consensus 685 i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~-------------kG~~~lkl~~~~d~lv~v~~v 751 (805)
T PRK05560 685 IKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG-------------KGVITIKITEKNGKLVGALPV 751 (805)
T ss_pred ccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC-------------CcEEeeeccCCCCeEEEEEEe
Confidence 1222345666665543 256778888866655432221111100 111111121112344444331
Q ss_pred eccccccEEEEEEcCCCEEEEeCCCCCCCCC
Q 009463 484 NSIYWNAHTFALTESGKLYAFGAGDKGQLGI 514 (534)
Q Consensus 484 ~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~ 514 (534)
.+....+++|.+|++..+-.++--..|.
T Consensus 752 ---~~~~~v~i~T~~G~~lrf~~~eI~~~gR 779 (805)
T PRK05560 752 ---DDDDEIMLITDSGKLIRTRVSEISITGR 779 (805)
T ss_pred ---cCCCeEEEEecCCeEEEEEHHHCCcccc
Confidence 1445688899999988886665444443
No 68
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=27.37 E-value=6.3e+02 Score=25.12 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=12.7
Q ss_pred EEEEEEcCCCEEEEeCCC
Q 009463 491 HTFALTESGKLYAFGAGD 508 (534)
Q Consensus 491 ht~alt~~G~vy~wG~n~ 508 (534)
+..+...++++|.+|-.+
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 344455678999999754
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=26.98 E-value=5.4e+02 Score=24.26 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCC--eEEEEecCCc-EEEEecCCCCCcccCCC
Q 009463 158 IAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQ-VYAFGKDSFGEAEYGVQ 234 (534)
Q Consensus 158 ~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~--h~~~Lt~~G~-vy~wG~n~~GqlG~g~~ 234 (534)
++++.+|++|+--.+......... ......-.+.++..+..+-. ..++++.+|+ ||..-....--.-....
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~------g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDP------GSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGS------EEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCCEEEEecCCCccccccc------cceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEecc
Q ss_pred Ceee-eecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEec-
Q 009463 235 GTKL-VTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG- 312 (534)
Q Consensus 235 ~~~~-~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G- 312 (534)
.... ...+..+..+.... |.--.++++.+|+||+..+....-.-.........-.. +....+..++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~------g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~----~p~~~~t~~~fgg 234 (246)
T PF08450_consen 165 ADGGELSNRRVFIDFPGGP------GYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIE----LPVPRPTNCAFGG 234 (246)
T ss_dssp TTTCCEEEEEEEEE-SSSS------CEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-----SSSSEEEEEEES
T ss_pred ccccceeeeeeEEEcCCCC------cCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEc----CCCCCEEEEEEEC
Q ss_pred -ceeEEEeee
Q 009463 313 -YCYLLALAC 321 (534)
Q Consensus 313 -~~~~~~lt~ 321 (534)
....+++|.
T Consensus 235 ~~~~~L~vTt 244 (246)
T PF08450_consen 235 PDGKTLYVTT 244 (246)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
No 70
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=25.92 E-value=1.3e+02 Score=28.76 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=37.9
Q ss_pred ecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeee
Q 009463 258 IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 333 (534)
Q Consensus 258 ~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~ 333 (534)
-+..-.++.+.+|.||+|-||.+|++-.- .+. ..+.-..-|..+..-++..+...+| .++.|-.
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~------~~s-----~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~ 131 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHSDR------VCS-----GEESIDLGIPNGRDSSLGCVGAQDG-RIRACNI 131 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHHHh------hhc-----ccccceeccccccccceeEEeccCC-ceeeecc
Confidence 34455677899999999999977765321 111 1111233455566644455544577 8887753
No 71
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=25.87 E-value=1.1e+03 Score=27.34 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=104.1
Q ss_pred EecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccc-ccccccCCcCEEEEEec-----ceeEEEeeeeCCCCeEEE
Q 009463 257 AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH-PLLGTLENIPVVQIAAG-----YCYLLALACQPSGMAVYS 330 (534)
Q Consensus 257 a~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~-~v~~~~~~~~i~~Ia~G-----~~~~~~lt~~~~G~~vy~ 330 (534)
+....+.++.|+.|++|..-...--..+ ....-.|. .+.....+.+|+.+.+- ....+++|. +| .+.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~---r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~--~G-yiKR 616 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEAS---RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATK--NG-VVKK 616 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCC---cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeC--CC-EEEE
Confidence 3455668889999999977322211111 11111111 00111345567666552 124566665 67 5554
Q ss_pred eeeCCCccccCCCCCCCcCceeeeecccCCCCcEEE--EeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEec
Q 009463 331 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQ 408 (534)
Q Consensus 331 wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~I--a~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~ 408 (534)
.-.+.+-.... .....-.+.. +..++.+ +....+.+++|++|++|..=..+--..|....... .+.
T Consensus 617 i~l~~~~~~~r-------~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~ 684 (800)
T TIGR01063 617 TSLTEFSNIRS-------NGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIK 684 (800)
T ss_pred EEhHHhhhhcc-------CCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----ccc
Confidence 32221110000 0000001111 1233333 33345789999999999986654433333221111 122
Q ss_pred ccCCCcEEEEEec--CceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeecc
Q 009463 409 ALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSI 486 (534)
Q Consensus 409 ~l~~~~i~~Va~G--~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~ 486 (534)
.-.+.+|+.+.+- ..+.+++|++|.+.-.=..++-....+. .....-.+...+..++.+...
T Consensus 685 L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~-------------kGv~~ikl~~~~d~lv~~~~v--- 748 (800)
T TIGR01063 685 LKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG-------------KGVKSIKITDRNGQVVGAIAV--- 748 (800)
T ss_pred CCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC-------------cceEEEEccCCCCeEEEEEEe---
Confidence 2345566666542 3356778888877665433222111110 111111121112334443331
Q ss_pred ccccEEEEEEcCCCEEEEeCCCCCCCCC
Q 009463 487 YWNAHTFALTESGKLYAFGAGDKGQLGI 514 (534)
Q Consensus 487 ~G~~ht~alt~~G~vy~wG~n~~GqLG~ 514 (534)
......+++|++|++..+-.++--..|.
T Consensus 749 ~~~~~v~liT~~G~~lrf~~~eI~~~gR 776 (800)
T TIGR01063 749 DDDDELMLITSAGKLIRTSVQDVSEQGR 776 (800)
T ss_pred cCCCeEEEEecCCeEEEeeHhhCCcccc
Confidence 1445688889999988876655444443
No 72
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=25.37 E-value=1.8e+02 Score=24.54 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=38.9
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEE
Q 009463 198 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYT 274 (534)
Q Consensus 198 ~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~ 274 (534)
+.+++-|-..+.+-+..||.|-..+.... . ..... ...+.. ..+.|+.+. ...-+++++.|+||+
T Consensus 1 R~~~Ly~~~~~~L~i~~~g~V~gt~~~~~-~------~s~~~--i~~~~~-g~V~i~~~~--s~~YLcmn~~G~ly~ 65 (122)
T PF00167_consen 1 RHVQLYCRTGYFLQINPNGTVDGTGDDNS-P------YSVFE--IHSVGF-GVVRIRGVK--SCRYLCMNKCGRLYG 65 (122)
T ss_dssp EEEEEEETTSEEEEEETTSBEEEESSTTS-T------TGEEE--EEEEET-TEEEEEETT--TTEEEEEBTTSBEEE
T ss_pred CCEEEEECCCeEEEECCCCeEeCCCCcCc-c------eeEEE--EEeccc-eEEEEEEec--ceEEEEECCCCeEcc
Confidence 46788888788999999999998876411 0 11111 111111 222233333 345689999999993
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.93 E-value=5.2e+02 Score=27.14 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=40.2
Q ss_pred ceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEee
Q 009463 261 FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 332 (534)
Q Consensus 261 ~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG 332 (534)
.+++++--||-+|+-|.- .+++-.-+......-..+. ....+|+.|+.+.+--...+..+|+ .|..|-
T Consensus 350 ~ts~~fHpDgLifgtgt~-d~~vkiwdlks~~~~a~Fp--ght~~vk~i~FsENGY~Lat~add~-~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-DGVVKIWDLKSQTNVAKFP--GHTGPVKAISFSENGYWLATAADDG-SVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCC-CceEEEEEcCCccccccCC--CCCCceeEEEeccCceEEEEEecCC-eEEEEE
Confidence 577788888888833321 2333222221111111221 2445799999998877777766788 899995
No 74
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=24.85 E-value=1.1e+02 Score=23.92 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=25.2
Q ss_pred CcEEEEeC-CcEEEEEecCCcEEEEECCCCCcc
Q 009463 362 QPVVVAAG-AWHAAVVGQDGRVCTWGWGRYGCL 393 (534)
Q Consensus 362 ~i~~Ia~G-~~hs~alt~~G~vy~wG~n~~GqL 393 (534)
.-..|+|. ....++|++||.+|+-|--+.|.+
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 44689999 889999999999999987666654
No 75
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=24.57 E-value=9e+02 Score=29.17 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=64.5
Q ss_pred CEEEEEeccee-EEEeeeeCCCCeEEEeeeCCCccccCC-CCCCCcCceeeeecccCCCCcEEE-EeCCcEEEEE-ecCC
Q 009463 305 PVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHG-SRTDEKHPRLIEQFQLLNLQPVVV-AAGAWHAAVV-GQDG 380 (534)
Q Consensus 305 ~i~~Ia~G~~~-~~~lt~~~~G~~vy~wG~n~~gqLG~g-~~~~~~~p~~i~~~~~~~~~i~~I-a~G~~hs~al-t~~G 380 (534)
.+.+++....| +++++..+|| .|-.|-.. --.|.+ ...... +. ...+.++.++ .|+..+.+|+ ++||
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DG-tVKvW~~~--k~~~~~~s~rS~l--ty----s~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDG-TVKVWNLR--KLEGEGGSARSEL--TY----SPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred cccceeecCCCCceEEEecCCc-eEEEeeeh--hhhcCcceeeeeE--EE----eccCCceEEEEeccCCCeEEEEcCCC
Confidence 46688999999 8999998899 99999632 222332 111111 00 1122233333 3554444444 7899
Q ss_pred cEEEEECCCCCccCCCCCCCccccEEeccc---CCCcEEEEEec-----CceEEEEEeCCCEEEEeCC
Q 009463 381 RVCTWGWGRYGCLGHGNEECESVPKVVQAL---NDVKAIHVATG-----DYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 381 ~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l---~~~~i~~Va~G-----~~~t~alt~~G~vy~wG~n 440 (534)
.|-..+-+.+. .....+..+..+ .+..++++-+- ..--++.|..+.+..|+-.
T Consensus 1121 ~v~~~~id~~~-------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1121 SVRVLRIDHYN-------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred eEEEEEccccc-------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 98888876541 111222222211 12234444332 2223557888899999843
No 76
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=23.76 E-value=67 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=12.0
Q ss_pred CceEEEEEeCCCEEEEe
Q 009463 422 DYTTFVVSEDGDVYSFG 438 (534)
Q Consensus 422 ~~~t~alt~~G~vy~wG 438 (534)
..|+++...+++||.+|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 46888888889999999
No 77
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.53 E-value=1.1e+03 Score=26.74 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=69.1
Q ss_pred EEEcCCCe--EEEEEcCCcEEEEeCCCCCCcCCCCCcce-eeceeeccCCCCcEEEEEeCCCeEEEEe--cCCcEEEEec
Q 009463 149 QAIAGPGH--SIAVTSKGVVYSFGSNSSGQLGHGTTEEE-WRPRPIRSLQGIRIIQAAAGAGRTMLIS--DAGQVYAFGK 223 (534)
Q Consensus 149 ~is~G~~h--~~~l~~~G~vy~wG~n~~GqLG~g~~~~~-~~P~~v~~~~~~~I~~Is~G~~h~~~Lt--~~G~vy~wG~ 223 (534)
+++.+..- ++.+...|.=.++|+..-|||+.=+-... +..++-..+ .++..++-..+-.++.| +||+|-.|-.
T Consensus 302 ~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 302 SLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVWNT 379 (893)
T ss_pred EeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEEec
Confidence 45555443 55666779999999999999985332111 111111111 15666666666444444 6788888865
Q ss_pred CCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCC
Q 009463 224 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDA 281 (534)
Q Consensus 224 n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~g 281 (534)
.+. .+ ..+. -+.-.....++.+.-.+..+...-||.|-+|-..+|-
T Consensus 380 ~Sg-fC---------~vTF--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 380 QSG-FC---------FVTF--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cCc-eE---------EEEe--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 431 10 1111 1122345566777777777778889999999766653
No 78
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=23.27 E-value=7.8e+02 Score=24.81 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=73.2
Q ss_pred CceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEE
Q 009463 250 NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 329 (534)
Q Consensus 250 ~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy 329 (534)
...|+.|..-+.|.+++.++ ++|+|-....-++ +. +........-.+++....+. .+.
T Consensus 94 ~~~I~~V~l~r~riVvvl~~-~I~VytF~~n~k~-------------l~-------~~et~~NPkGlC~~~~~~~k-~~L 151 (346)
T KOG2111|consen 94 NSEIKAVKLRRDRIVVVLEN-KIYVYTFPDNPKL-------------LH-------VIETRSNPKGLCSLCPTSNK-SLL 151 (346)
T ss_pred ccceeeEEEcCCeEEEEecC-eEEEEEcCCChhh-------------ee-------eeecccCCCceEeecCCCCc-eEE
Confidence 34588999999999888765 7887754432221 10 00000100112222221133 666
Q ss_pred EeeeCCCccccCCCCCCCc--CceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCC-CCCCccccEE
Q 009463 330 SVGCGLGGKLGHGSRTDEK--HPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHG-NEECESVPKV 406 (534)
Q Consensus 330 ~wG~n~~gqLG~g~~~~~~--~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g-~~~~~~~P~~ 406 (534)
++-...-||+..-+..... .|..|+. -. ..|+ +++|+.+|.+.+-++- .|-|=.- ++. .-++
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~A---H~---s~Ia-----cv~Ln~~Gt~vATaSt-kGTLIRIFdt~---~g~~ 216 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINA---HD---SDIA-----CVALNLQGTLVATAST-KGTLIRIFDTE---DGTL 216 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEc---cc---Ccee-----EEEEcCCccEEEEecc-CcEEEEEEEcC---CCcE
Confidence 7666666776554432222 2444443 11 1233 4678888888776642 2322110 000 0111
Q ss_pred ecc----cCCCcEEEEEecCceE--EEEEeCCCEEEEeC
Q 009463 407 VQA----LNDVKAIHVATGDYTT--FVVSEDGDVYSFGC 439 (534)
Q Consensus 407 v~~----l~~~~i~~Va~G~~~t--~alt~~G~vy~wG~ 439 (534)
+.. .....|-.|+-..+-+ ++..+.|.|.+|+-
T Consensus 217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 111 1122344444444333 44567799999984
No 79
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=22.37 E-value=1.4e+02 Score=23.40 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=25.1
Q ss_pred cEEEEEeC-CCeEEEEecCCcEEEEecCCCCCc
Q 009463 198 RIIQAAAG-AGRTMLISDAGQVYAFGKDSFGEA 229 (534)
Q Consensus 198 ~I~~Is~G-~~h~~~Lt~~G~vy~wG~n~~Gql 229 (534)
.=..|+|. ....++|+.||.+|.-+--+.|++
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 45679999 889999999999999987666654
No 80
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.26 E-value=1.6e+02 Score=17.66 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=14.0
Q ss_pred eEEEEEcCCcEEEEeCCC
Q 009463 156 HSIAVTSKGVVYSFGSNS 173 (534)
Q Consensus 156 h~~~l~~~G~vy~wG~n~ 173 (534)
|.++++++|.+|+.=+++
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 567788999999887554
No 81
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=22.25 E-value=3.1e+02 Score=28.35 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=0.0
Q ss_pred eecccceEEEcCCCe---EEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcE
Q 009463 142 CCRRENSQAIAGPGH---SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQV 218 (534)
Q Consensus 142 ~~~~~i~~is~G~~h---~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~v 218 (534)
+.+..++.+.+|..+ .+++..+|++..|-.|. -+.++. ....+.+|..=....+|++..|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~--------------Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l 221 (373)
T PLN03215 157 YQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNV--------------LKALKQ-MGYHFSDIIVHKGQTYALDSIGIV 221 (373)
T ss_pred eeEEEEEEeecCCCcceEEEEEeecCcEeeecCCe--------------eeEccC-CCceeeEEEEECCEEEEEcCCCeE
Q ss_pred EEE
Q 009463 219 YAF 221 (534)
Q Consensus 219 y~w 221 (534)
|.+
T Consensus 222 ~~i 224 (373)
T PLN03215 222 YWI 224 (373)
T ss_pred EEE
No 82
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.24 E-value=1.2e+03 Score=26.55 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=59.9
Q ss_pred EEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCC
Q 009463 264 AVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGS 343 (534)
Q Consensus 264 ~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~ 343 (534)
+++...|+-.++|...-|||..-.-.....-.+.++ .-..+..++-..+-.++.|-.+|| +|-.|-..+.-.
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg--H~~~i~~l~YSpDgq~iaTG~eDg-KVKvWn~~SgfC----- 384 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG--HSDRITSLAYSPDGQLIATGAEDG-KVKVWNTQSGFC----- 384 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccc--cccceeeEEECCCCcEEEeccCCC-cEEEEeccCceE-----
Confidence 444455666666666666665322111111111111 112366666666655555655677 888875322111
Q ss_pred CCCCcCceeeeeccc--CCCCcEEEEeCCcEEEEEecCCcEEEEECCCCC
Q 009463 344 RTDEKHPRLIEQFQL--LNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYG 391 (534)
Q Consensus 344 ~~~~~~p~~i~~~~~--~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~G 391 (534)
+..|.. .....+++..-.+..+...-||+|-+|-...|-
T Consensus 385 ---------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 385 ---------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ---------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 111211 223445677777777788889999999877654
No 83
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=22.08 E-value=7.5e+02 Score=24.56 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=11.4
Q ss_pred EEEcCCCEEEEeCCC
Q 009463 494 ALTESGKLYAFGAGD 508 (534)
Q Consensus 494 alt~~G~vy~wG~n~ 508 (534)
++.-+++||..|-..
T Consensus 299 ~~~~~~~iyv~GG~~ 313 (323)
T TIGR03548 299 LLLTGNNIFSINGEL 313 (323)
T ss_pred eEEECCEEEEEeccc
Confidence 456678999999753
No 84
>PHA02790 Kelch-like protein; Provisional
Probab=20.88 E-value=5.5e+02 Score=27.49 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=11.2
Q ss_pred EEEecCCcEEEEecC
Q 009463 210 MLISDAGQVYAFGKD 224 (534)
Q Consensus 210 ~~Lt~~G~vy~wG~n 224 (534)
.+..-+|+||+.|..
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 344568999999864
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=20.20 E-value=1e+03 Score=25.07 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=44.1
Q ss_pred ceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEE
Q 009463 423 YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLY 502 (534)
Q Consensus 423 ~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy 502 (534)
++++++-.||-+++-|.-+ |++- .-+...+..+..++.....|..|+-. -.| |.-+.-.+|+.|.
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vk-----------iwdlks~~~~a~Fpght~~vk~i~Fs--ENG-Y~Lat~add~~V~ 414 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVK-----------IWDLKSQTNVAKFPGHTGPVKAISFS--ENG-YWLATAADDGSVK 414 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEE-----------EEEcCCccccccCCCCCCceeEEEec--cCc-eEEEEEecCCeEE
Confidence 7888888999988888532 3332 22344555666666666678888761 112 3333445778899
Q ss_pred EEeCC
Q 009463 503 AFGAG 507 (534)
Q Consensus 503 ~wG~n 507 (534)
.|--.
T Consensus 415 lwDLR 419 (506)
T KOG0289|consen 415 LWDLR 419 (506)
T ss_pred EEEeh
Confidence 99754
Done!