Query 009463
Match_columns 534
No_of_seqs 530 out of 2200
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 05:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.3E-72 4.5E-77 589.5 44.7 361 144-530 15-376 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 3.1E-69 1.1E-73 561.0 33.9 354 151-530 7-364 (389)
3 1a12_A RCC1, regulator of chro 100.0 9.7E-67 3.3E-71 546.7 35.3 353 150-531 13-385 (413)
4 3mvd_K Regulator of chromosome 100.0 3.2E-66 1.1E-70 544.6 36.5 355 144-531 23-394 (423)
5 3of7_A Regulator of chromosome 100.0 1.4E-65 4.7E-70 546.7 33.0 365 146-530 11-425 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 1.2E-64 4.3E-69 526.3 35.8 332 145-499 53-388 (389)
7 1a12_A RCC1, regulator of chro 100.0 6.1E-62 2.1E-66 510.2 37.8 334 145-501 59-412 (413)
8 4d9s_A UVB-resistance protein 100.0 1.3E-61 4.4E-66 506.4 36.2 312 145-472 68-380 (406)
9 3of7_A Regulator of chromosome 100.0 2.2E-60 7.4E-65 506.6 37.6 330 145-497 67-449 (473)
10 3mvd_K Regulator of chromosome 100.0 9.2E-60 3.1E-64 495.4 41.1 328 145-500 75-420 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 5.3E-50 1.8E-54 397.2 30.1 254 144-502 23-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 3E-49 1E-53 391.8 29.2 251 165-515 3-253 (282)
13 1p22_A F-BOX/WD-repeat protein 97.4 0.15 5.1E-06 52.0 32.5 282 146-510 135-416 (435)
14 1k3i_A Galactose oxidase precu 96.3 0.28 9.4E-06 53.3 20.9 76 422-510 457-533 (656)
15 2ovr_B FBW7, F-BOX/WD repeat p 96.2 1.3 4.4E-05 44.9 34.9 268 149-508 124-391 (445)
16 1gxr_A ESG1, transducin-like e 96.1 1 3.5E-05 43.0 31.8 282 151-509 8-297 (337)
17 1p22_A F-BOX/WD-repeat protein 95.4 2.6 8.8E-05 42.5 32.2 229 198-506 135-363 (435)
18 4gbf_A Phikz131; 7-bladed beta 95.4 0.03 1E-06 51.9 7.0 70 198-282 310-379 (400)
19 4aez_A CDC20, WD repeat-contai 94.9 3.5 0.00012 41.0 30.1 148 148-333 97-246 (401)
20 4gbf_A Phikz131; 7-bladed beta 94.3 0.1 3.6E-06 48.4 7.4 71 414-512 310-380 (400)
21 2zwa_A Leucine carboxyl methyl 94.2 5.6 0.00019 43.3 22.6 18 370-387 598-615 (695)
22 1k3i_A Galactose oxidase precu 93.0 2.3 7.9E-05 45.9 17.0 72 370-443 457-533 (656)
23 3odt_A Protein DOA1; ubiquitin 92.6 6.6 0.00023 36.6 28.8 186 197-440 105-295 (313)
24 4g56_B MGC81050 protein; prote 92.1 9.6 0.00033 37.2 27.2 196 253-507 97-300 (357)
25 2zwa_A Leucine carboxyl methyl 91.9 4.7 0.00016 43.9 17.7 63 155-224 442-509 (695)
26 2ovr_B FBW7, F-BOX/WD repeat p 91.8 11 0.00039 37.6 36.5 227 147-440 162-390 (445)
27 3odt_A Protein DOA1; ubiquitin 91.7 8.5 0.00029 35.9 31.4 270 146-508 20-296 (313)
28 3k26_A Polycomb protein EED; W 91.5 9.9 0.00034 36.3 29.4 211 145-389 19-260 (366)
29 1sq9_A Antiviral protein SKI8; 91.0 12 0.00041 36.4 32.4 247 145-439 17-320 (397)
30 3zwl_B Eukaryotic translation 90.7 12 0.0004 35.8 33.0 201 146-387 34-247 (369)
31 3sfz_A APAF-1, apoptotic pepti 90.7 28 0.00096 40.1 23.8 186 206-440 1015-1206(1249)
32 3mmy_A MRNA export factor; mRN 90.5 12 0.00042 35.6 25.6 193 196-440 39-246 (368)
33 2xyi_A Probable histone-bindin 89.2 19 0.00065 35.9 26.8 263 145-440 129-409 (430)
34 1gxr_A ESG1, transducin-like e 86.3 22 0.00074 33.3 29.3 200 203-439 8-212 (337)
35 3v7d_B Cell division control p 85.8 30 0.001 34.5 35.4 203 198-440 205-420 (464)
36 4ery_A WD repeat-containing pr 84.9 26 0.00087 32.8 28.3 190 146-388 25-222 (312)
37 3k26_A Polycomb protein EED; W 83.6 30 0.001 32.7 26.5 159 197-389 19-192 (366)
38 4gga_A P55CDC, cell division c 83.4 37 0.0013 33.5 31.3 103 150-276 111-215 (420)
39 4aez_A CDC20, WD repeat-contai 83.0 37 0.0013 33.2 22.7 150 253-440 96-247 (401)
40 1sq9_A Antiviral protein SKI8; 82.7 36 0.0012 32.9 24.5 28 362-389 293-322 (397)
41 3mmy_A MRNA export factor; mRN 81.6 36 0.0012 32.1 23.3 151 250-440 39-198 (368)
42 2xyi_A Probable histone-bindin 79.8 51 0.0017 32.7 22.5 204 156-388 196-409 (430)
43 3v7d_B Cell division control p 79.0 54 0.0018 32.6 32.9 243 199-508 125-381 (464)
44 3mkq_A Coatomer beta'-subunit; 76.1 90 0.0031 33.6 28.0 190 198-439 15-215 (814)
45 3jro_A Fusion protein of prote 75.8 93 0.0032 33.7 24.8 189 157-389 24-238 (753)
46 3no0_A DNA gyrase subunit A; D 75.6 55 0.0019 30.9 21.1 217 252-514 25-252 (276)
47 2aq5_A Coronin-1A; WD40 repeat 74.9 64 0.0022 31.4 27.9 156 202-388 40-206 (402)
48 4a11_B DNA excision repair pro 71.1 74 0.0025 30.4 34.1 305 144-513 43-370 (408)
49 4gqb_B Methylosome protein 50; 71.0 76 0.0026 30.5 25.0 112 252-387 84-199 (344)
50 4a11_B DNA excision repair pro 69.8 79 0.0027 30.2 28.6 211 197-441 44-276 (408)
51 2aq5_A Coronin-1A; WD40 repeat 69.8 84 0.0029 30.5 27.1 154 150-332 40-204 (402)
52 1yfq_A Cell cycle arrest prote 69.7 72 0.0025 29.7 28.9 205 198-441 13-225 (342)
53 3gre_A Serine/threonine-protei 68.1 94 0.0032 30.4 24.1 165 146-333 65-243 (437)
54 3mkq_A Coatomer beta'-subunit; 67.7 1.4E+02 0.0047 32.1 33.5 233 146-440 15-258 (814)
55 2pm9_A Protein WEB1, protein t 67.0 93 0.0032 29.9 24.5 248 198-510 69-339 (416)
56 3jrp_A Fusion protein of prote 66.7 87 0.003 29.5 30.2 242 146-440 13-286 (379)
57 3vl1_A 26S proteasome regulato 66.0 99 0.0034 29.9 32.4 141 151-333 65-210 (420)
58 3i2n_A WD repeat-containing pr 64.9 91 0.0031 29.1 25.7 200 146-389 67-291 (357)
59 4gga_A P55CDC, cell division c 64.8 1.1E+02 0.0037 30.0 22.3 144 260-440 115-260 (420)
60 1pgu_A Actin interacting prote 64.3 1.3E+02 0.0045 30.7 31.2 57 154-224 309-365 (615)
61 1r5m_A SIR4-interacting protei 64.2 1E+02 0.0035 29.5 31.7 67 362-440 291-360 (425)
62 3no0_A DNA gyrase subunit A; D 63.5 99 0.0034 29.0 22.2 218 196-448 23-253 (276)
63 3i2n_A WD repeat-containing pr 62.9 99 0.0034 28.8 32.9 259 198-507 67-352 (357)
64 1q7f_A NHL, brain tumor CG1071 62.6 92 0.0031 28.4 24.0 16 372-387 210-225 (286)
65 1rwi_B Serine/threonine-protei 61.5 91 0.0031 27.9 16.0 229 208-509 27-255 (270)
66 3zwl_B Eukaryotic translation 60.1 1.1E+02 0.0038 28.5 25.6 149 155-332 87-246 (369)
67 1k8k_C P40, ARP2/3 complex 41 59.0 1.2E+02 0.0041 28.5 32.1 209 198-440 54-273 (372)
68 2ymu_A WD-40 repeat protein; u 58.9 1.6E+02 0.0055 29.9 31.8 183 198-438 346-536 (577)
69 3jrp_A Fusion protein of prote 58.3 1.2E+02 0.0042 28.4 30.6 198 198-440 13-239 (379)
70 4asc_A Kelch repeat and BTB do 57.6 1.2E+02 0.004 28.5 12.7 17 370-387 140-156 (315)
71 3uc1_A DNA gyrase subunit A; D 56.0 1.5E+02 0.005 28.6 23.9 219 256-509 49-280 (327)
72 3no2_A Uncharacterized protein 54.8 1.3E+02 0.0045 27.7 22.2 23 372-395 245-267 (276)
73 1fs1_A SKP2 F-BOX, cyclin A/CD 53.7 2.5 8.6E-05 28.9 -0.2 33 49-83 8-41 (53)
74 3uc1_A DNA gyrase subunit A; D 53.4 1.6E+02 0.0056 28.3 23.7 223 150-395 49-285 (327)
75 4gqb_B Methylosome protein 50; 53.1 1.6E+02 0.0054 28.1 33.1 193 198-438 84-286 (344)
76 1pgu_A Actin interacting prote 51.8 2.1E+02 0.0071 29.1 32.0 111 304-440 161-282 (615)
77 1xip_A Nucleoporin NUP159; bet 51.8 1.2E+02 0.0042 30.0 11.9 74 187-277 80-153 (388)
78 2xn4_A Kelch-like protein 2; s 50.4 1.6E+02 0.0053 27.2 15.7 16 155-171 54-69 (302)
79 3jro_A Fusion protein of prote 50.0 2.7E+02 0.0092 29.9 24.4 204 145-389 54-285 (753)
80 2vpj_A Kelch-like protein 12; 48.2 1.7E+02 0.0057 27.0 14.8 18 207-225 55-72 (301)
81 4aow_A Guanine nucleotide-bind 47.5 1.7E+02 0.0059 26.9 32.8 65 362-439 217-284 (340)
82 4ggc_A P55CDC, cell division c 46.7 1.7E+02 0.0058 26.6 18.0 147 256-437 31-177 (318)
83 3f3f_A Nucleoporin SEH1; struc 45.3 1.8E+02 0.0062 26.5 30.6 121 146-279 13-143 (351)
84 2ymu_A WD-40 repeat protein; u 45.2 2.6E+02 0.0088 28.3 31.3 183 198-438 305-495 (577)
85 1erj_A Transcriptional repress 44.2 2.3E+02 0.0077 27.3 24.1 204 148-385 171-385 (393)
86 1q7f_A NHL, brain tumor CG1071 44.1 1.8E+02 0.0062 26.2 23.7 17 424-440 210-226 (286)
87 4asc_A Kelch repeat and BTB do 44.0 1.1E+02 0.0037 28.7 9.9 18 422-440 140-157 (315)
88 3q7x_A De novo designed beta-t 42.2 1.3E+02 0.0045 24.7 8.7 101 150-273 11-112 (132)
89 1r5m_A SIR4-interacting protei 41.8 2.3E+02 0.008 26.8 27.8 69 304-388 290-360 (425)
90 3p6j_A De novo designed beta-t 41.6 1.6E+02 0.0053 24.7 11.0 104 147-273 32-137 (142)
91 3e5z_A Putative gluconolactona 41.3 2.1E+02 0.0071 26.1 18.6 14 262-275 118-131 (296)
92 1zgk_A Kelch-like ECH-associat 40.9 1.8E+02 0.0062 27.0 10.9 16 371-387 255-270 (308)
93 1vyh_C Platelet-activating fac 40.8 2.6E+02 0.009 27.1 30.4 145 146-332 110-262 (410)
94 4aow_A Guanine nucleotide-bind 39.3 2.3E+02 0.0078 26.0 27.5 69 304-388 216-285 (340)
95 2woz_A Kelch repeat and BTB do 37.8 2.4E+02 0.0084 26.2 11.4 16 371-387 151-166 (318)
96 3ow8_A WD repeat-containing pr 37.7 2.6E+02 0.0088 26.1 33.2 179 262-505 136-318 (321)
97 3ii7_A Kelch-like protein 7; p 37.4 2.5E+02 0.0085 25.8 15.7 17 422-439 192-208 (306)
98 3ei3_B DNA damage-binding prot 36.8 2.8E+02 0.0094 26.2 27.4 196 145-389 74-282 (383)
99 3l6v_A GYRA, DNA gyrase subuni 36.2 3.2E+02 0.011 26.8 26.8 126 150-284 53-185 (370)
100 4e54_B DNA damage-binding prot 34.5 3.3E+02 0.011 26.5 18.2 72 251-333 251-325 (435)
101 1suu_A DNA gyrase subunit A; t 34.4 3.1E+02 0.01 26.0 25.9 245 148-419 52-308 (312)
102 3sfz_A APAF-1, apoptotic pepti 33.6 5.7E+02 0.02 28.9 31.5 108 198-333 659-772 (1249)
103 1k8k_C P40, ARP2/3 complex 41 33.4 3E+02 0.01 25.6 28.0 207 252-508 54-274 (372)
104 2vpj_A Kelch-like protein 12; 33.4 2.8E+02 0.0097 25.3 17.2 18 155-173 55-72 (301)
105 3no2_A Uncharacterized protein 33.0 2.9E+02 0.0099 25.3 26.3 167 250-448 87-268 (276)
106 4g56_B MGC81050 protein; prote 32.3 3.3E+02 0.011 25.8 34.1 240 198-510 96-345 (357)
107 2z2n_A Virginiamycin B lyase; 31.2 2.9E+02 0.0098 24.7 21.9 17 155-171 17-33 (299)
108 1xip_A Nucleoporin NUP159; bet 31.0 1E+02 0.0036 30.5 7.5 25 415-440 90-114 (388)
109 1yfq_A Cell cycle arrest prote 30.6 3.2E+02 0.011 25.0 30.6 194 156-390 25-226 (342)
110 3vl1_A 26S proteasome regulato 30.3 3.6E+02 0.012 25.6 31.0 69 362-440 292-364 (420)
111 1zvt_A Topoisomerase IV subuni 30.0 3.3E+02 0.011 25.0 10.7 128 366-514 40-169 (256)
112 4ery_A WD repeat-containing pr 29.2 3.3E+02 0.011 24.8 26.1 190 198-440 25-222 (312)
113 2ynn_A Coatomer subunit beta'; 29.0 3.4E+02 0.011 24.8 28.5 234 198-508 15-259 (304)
114 3vu4_A KMHSV2; beta-propeller 28.7 3.7E+02 0.013 25.3 22.4 159 305-508 102-271 (355)
115 3p6j_A De novo designed beta-t 28.3 2.6E+02 0.0089 23.3 12.0 107 302-436 28-138 (142)
116 3gre_A Serine/threonine-protei 27.6 4.2E+02 0.014 25.5 23.4 114 146-277 113-243 (437)
117 2j04_A TAU60, YPL007P, hypothe 27.3 5.6E+02 0.019 26.8 20.3 159 252-440 87-253 (588)
118 1zvt_A Topoisomerase IV subuni 25.8 3.9E+02 0.013 24.5 13.2 124 150-285 40-169 (256)
119 3f3f_A Nucleoporin SEH1; struc 24.4 3.9E+02 0.013 24.0 26.3 77 146-225 59-143 (351)
120 2uvk_A YJHT; unknown function, 22.6 2.4E+02 0.0081 26.7 8.3 17 260-277 110-126 (357)
121 3ii7_A Kelch-like protein 7; p 22.4 4.5E+02 0.015 24.0 15.4 17 370-387 93-109 (306)
122 3ow8_A WD repeat-containing pr 21.9 4.7E+02 0.016 24.1 26.3 145 252-438 166-318 (321)
123 3dw8_B Serine/threonine-protei 21.5 5.3E+02 0.018 24.6 16.4 229 153-385 178-442 (447)
124 3hrp_A Uncharacterized protein 21.4 5.7E+02 0.02 24.9 21.7 18 423-440 382-399 (409)
125 1got_B GT-beta; complex (GTP-b 21.3 4.9E+02 0.017 24.1 33.0 98 263-388 157-256 (340)
126 2pm9_A Protein WEB1, protein t 20.4 5.4E+02 0.018 24.2 22.9 122 252-388 69-196 (416)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-72 Score=589.48 Aligned_cols=361 Identities=30% Similarity=0.502 Sum_probs=333.8
Q ss_pred cccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCC-cEEEEe
Q 009463 144 RRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAG-QVYAFG 222 (534)
Q Consensus 144 ~~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G-~vy~wG 222 (534)
.++|++|+||..|+++|+++|+||+||.|.+||||.++..+...|++++.+.+.+|++|+||..|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 4578999999999999999999999999999999999999999999999998889999999999999999986 999999
Q ss_pred cCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccC
Q 009463 223 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 302 (534)
Q Consensus 223 ~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 302 (534)
.|.+||||.+. ......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.. +.
T Consensus 95 ~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~ 171 (406)
T 4d9s_A 95 WGDFGRLGHGN--SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FE 171 (406)
T ss_dssp CCGGGTTCSSS--CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCcCCCCCC--CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-cC
Confidence 99999999986 3556778889888888999999999999999999999999999999999999988888988876 77
Q ss_pred CcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcE
Q 009463 303 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRV 382 (534)
Q Consensus 303 ~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~v 382 (534)
+.+|++|+||.+|+++|++ +| +||+||.|.+||||.+.......|.++..+ ...+|++|+||.+|+++|+++|+|
T Consensus 172 ~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~i~~va~G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVTE--DG-DLYGWGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGAL 246 (406)
T ss_dssp TCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSSSSCCEEEEEECCCS--TTCCEEEEEECSSEEEEEETTCCE
T ss_pred CCcEEEEecCCCeEEEEeC--CC-CEEEeeCCCCCCCCCCCCCCcCccEEeccc--CCceEEEEEECCCcEEEEcCCCCE
Confidence 7889999999999999997 89 999999999999999998888889888764 346799999999999999999999
Q ss_pred EEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccc
Q 009463 383 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVL 462 (534)
Q Consensus 383 y~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~ 462 (534)
|+||.|.+||||.++......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+. .....
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~ 318 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--------NLDQC 318 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------SSCEE
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC--------CCCCc
Confidence 9999999999999999899999999999999999999999999999999999999999999999987 45567
Q ss_pred cCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCCceEee
Q 009463 463 TPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 530 (534)
Q Consensus 463 ~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P~~v~ 530 (534)
.|.++..+ ...+|++|+| |.+|++||+++|+||+||.|++||||+|.. .+...|++|+
T Consensus 319 ~p~~v~~~--~~~~v~~va~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~---~~~~~P~~v~ 376 (406)
T 4d9s_A 319 SPVQVRFP--DDQKVVQVSC-----GWRHTLAVTERNNVFAWGRGTNGQLGIGES---VDRNFPKIIE 376 (406)
T ss_dssp EEEEECCG--GGCCEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSC---CCEEEEEECG
T ss_pred cCEEEecc--CCCcEEEEEe-----CCCeEEEEeCCCCEEEecCCCCCccCCCCC---CCCcCCEEee
Confidence 88888766 4578999999 999999999999999999999999999954 4566677765
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-69 Score=560.97 Aligned_cols=354 Identities=29% Similarity=0.502 Sum_probs=312.1
Q ss_pred EcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCcc
Q 009463 151 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAE 230 (534)
Q Consensus 151 s~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG 230 (534)
..-..+.+++++||+||+||.|.+||||.++......|++++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||
T Consensus 7 ~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 7 HSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp --------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred ccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 33456778999999999999999999999988888999999988888999999999999999999999999999999999
Q ss_pred cCCCCeeeeecCeEeccCCCc--eEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEE
Q 009463 231 YGVQGTKLVTSPQLVESLKNI--FVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQ 308 (534)
Q Consensus 231 ~g~~~~~~~~~P~~v~~l~~~--~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ 308 (534)
.+. ......|.+++.+... ++++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.. +.+.+|++
T Consensus 87 ~g~--~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ 163 (389)
T 3kci_A 87 IGG--TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVD 163 (389)
T ss_dssp SSS--SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCEEE
T ss_pred CCC--cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecc-cCCCeEEE
Confidence 986 4566788888887765 457889999999999999999999999999999999888888888876 77788999
Q ss_pred EEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCC--cEEEEEecCCcEEEEE
Q 009463 309 IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCTWG 386 (534)
Q Consensus 309 Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~--~hs~alt~~G~vy~wG 386 (534)
|+||..|+++|++ +| +||+||.|.+||||.+.......|+.++.+ .+.+|++|+||. .|+++|+++|+||+||
T Consensus 164 va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 164 VAAGGAHSACVTA--AG-DLYTWGKGRYGRLGHSDSEDQLKPKLVEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp EEECSSEEEEEET--TS-CEEEEECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred EEeCcCeEEEEeC--CC-eEEEeCCCCCCCcCCCCCcccccceEeccc--CCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence 9999999999997 89 999999999999999999888889888765 456899999995 8999999999999999
Q ss_pred CCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeE
Q 009463 387 WGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQL 466 (534)
Q Consensus 387 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~ 466 (534)
.|.+||||.+.......|.+++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+. ......|++
T Consensus 239 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~P~~ 310 (389)
T 3kci_A 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHVRRPRQ 310 (389)
T ss_dssp CCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS--------CCCEEEEEE
T ss_pred CCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC--------CccccCCeE
Confidence 999999999998889999999999999999999999999999999999999999999999987 456778999
Q ss_pred eeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCCceEee
Q 009463 467 VTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 530 (534)
Q Consensus 467 v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P~~v~ 530 (534)
+..+ .+.+|++|+| |.+|++||+++|+||+||.|++||||++.. .....|++|+
T Consensus 311 v~~l--~~~~v~~ia~-----G~~h~~al~~~G~v~~wG~n~~GqLG~g~~---~~~~~P~~v~ 364 (389)
T 3kci_A 311 VQGL--QGKKVIAIAT-----GSLHCVCCTEDGEVYTWGDNDEGQLGDGTT---NAIQRPRLVA 364 (389)
T ss_dssp CGGG--TTCCEEEEEE-----CSSEEEEEETTCCEEEEECCTTSTTCSSSC---CCEEEEEECG
T ss_pred eccC--CCCCEEEEEe-----ccCeEEEECCCCCEEEeeCCCCCcCCCCCC---CCccCcEEec
Confidence 8877 5578999999 999999999999999999999999999954 4556777775
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=9.7e-67 Score=546.65 Aligned_cols=353 Identities=25% Similarity=0.386 Sum_probs=304.0
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcc-eeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCC
Q 009463 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE-EWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGE 228 (534)
Q Consensus 150 is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~-~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~Gq 228 (534)
.+.+..|+++++++|+||+||.|.+||||.++... ...|+++..+ .+|++|+||..|+++|+++|+||+||.|.+||
T Consensus 13 ~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~Gq 90 (413)
T 1a12_A 13 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 90 (413)
T ss_dssp CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred hhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCC
Confidence 45668999999999999999999999999998654 5678888754 58999999999999999999999999999999
Q ss_pred cccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEee--CCCCCCCCCCCCCc-ccccccccccCCcC
Q 009463 229 AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTEPND-VEPHPLLGTLENIP 305 (534)
Q Consensus 229 lG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~--n~~gqlG~~~~~~~-~~p~~v~~~~~~~~ 305 (534)
||.+.........|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+..... ..|.++ +...+
T Consensus 91 LG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v---~~~~~ 165 (413)
T 1a12_A 91 LGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV---QLDVP 165 (413)
T ss_dssp TCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE---CCSSC
T ss_pred CCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe---cCCCC
Confidence 9998743345567888853 2379999999999999999999999998 89999998866543 346666 44567
Q ss_pred EEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCC-----------CcCceeeeeccc---CCCCcEEEEeCCc
Q 009463 306 VVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD-----------EKHPRLIEQFQL---LNLQPVVVAAGAW 371 (534)
Q Consensus 306 i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~-----------~~~p~~i~~~~~---~~~~i~~Ia~G~~ 371 (534)
|++|+||.+|+++|++ +| +||+||.|.+||||.+.... ...|+.+..... ...+|++|+||.+
T Consensus 166 i~~ia~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~ 242 (413)
T 1a12_A 166 VVKVASGNDHLVMLTA--DG-DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY 242 (413)
T ss_dssp EEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT
T ss_pred EEEEEecCceEEEEcC--CC-CEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCC
Confidence 9999999999999997 89 99999999999999875422 245655543211 3457999999999
Q ss_pred EEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCC--CcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCC
Q 009463 372 HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALND--VKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNA 449 (534)
Q Consensus 372 hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~--~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~ 449 (534)
|+++|+++|+||+||.|.+||||.++......|++|..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+.
T Consensus 243 hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~ 322 (413)
T 1a12_A 243 FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE 322 (413)
T ss_dssp EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT
T ss_pred EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCC
Confidence 99999999999999999999999999888899999998876 6799999999999999999999999999999999984
Q ss_pred CCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCCceEe
Q 009463 450 IADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERV 529 (534)
Q Consensus 450 ~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P~~v 529 (534)
.......|++|+.+. +|++|+| |.+|++||+++|+||+||.|++||||++.. .+...|++|
T Consensus 323 -------~~~~~~~P~~v~~l~----~v~~v~~-----G~~hs~alt~~G~v~~wG~n~~gqLG~g~~---~~~~~P~~v 383 (413)
T 1a12_A 323 -------GAEEKSIPTLISRLP----AVSSVAC-----GASVGYAVTKDGRVFAWGMGTNYQLGTGQD---EDAWSPVEM 383 (413)
T ss_dssp -------TCCCEEEEEECCSSS----SEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSC---SCEEEEEEC
T ss_pred -------CCccccCCEEecccC----ceeEEEE-----CcceEEEEeCCCCEEEecCCCCCCCCCCCC---CCcccCeEc
Confidence 244567888888762 7999999 999999999999999999999999999954 556778877
Q ss_pred ec
Q 009463 530 DI 531 (534)
Q Consensus 530 ~~ 531 (534)
+.
T Consensus 384 ~~ 385 (413)
T 1a12_A 384 MG 385 (413)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3.2e-66 Score=544.57 Aligned_cols=355 Identities=23% Similarity=0.330 Sum_probs=301.6
Q ss_pred cccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCC-cceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEe
Q 009463 144 RRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT-EEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 222 (534)
Q Consensus 144 ~~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~-~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG 222 (534)
..++++|++|..|+++++++|+||+||.|.+||||.++. .....|.+++.+. +|++|+||..|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEEeE
Confidence 345678999999999999999999999999999999975 4567799988776 5899999999999999999999999
Q ss_pred cCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEee--CCCCCCCCCCCCCcccccccccc
Q 009463 223 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTEPNDVEPHPLLGT 300 (534)
Q Consensus 223 ~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~--n~~gqlG~~~~~~~~~p~~v~~~ 300 (534)
.|.+||||.+.........|.++... .+|++|+||..|+++|+++|+||+||. |.+||||.+.......|.++
T Consensus 101 ~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~--- 175 (423)
T 3mvd_K 101 CNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL--- 175 (423)
T ss_dssp CCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES---
T ss_pred CCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe---
Confidence 99999999997544456788888753 369999999999999999999999998 99999999887776666554
Q ss_pred cCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCC-----------CCcCceeeeecccCCCCcEEEEeC
Q 009463 301 LENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-----------DEKHPRLIEQFQLLNLQPVVVAAG 369 (534)
Q Consensus 301 ~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~-----------~~~~p~~i~~~~~~~~~i~~Ia~G 369 (534)
+...+|++|+||.+|+++|++ +| +||+||.|.+||||.+... ....|..+... ...+|++|+||
T Consensus 176 ~~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~v~~i~~g 250 (423)
T 3mvd_K 176 MEGTVCCSIASGADHLVILTT--AG-KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--RAKPFEAIWAT 250 (423)
T ss_dssp STTCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--TCCCEEEEEEE
T ss_pred cCCCcEEEEecCCCeEEEEec--CC-eEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--CCccEEEEEEC
Confidence 556789999999999999997 89 9999999999999997643 34567777643 34578999999
Q ss_pred CcEEEEE-ecCCcEEEEECCCCCccCCCCCC--CccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCC
Q 009463 370 AWHAAVV-GQDGRVCTWGWGRYGCLGHGNEE--CESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 446 (534)
Q Consensus 370 ~~hs~al-t~~G~vy~wG~n~~GqLG~g~~~--~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG 446 (534)
.+|++++ +++|+||+||.|.+||||.+... ....|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus 251 ~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG 327 (423)
T 3mvd_K 251 NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLG 327 (423)
T ss_dssp TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTC
T ss_pred CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCC
Confidence 9999999 69999999999999999996533 344566554 34799999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCCc
Q 009463 447 HNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNP 526 (534)
Q Consensus 447 ~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P 526 (534)
.+. .......|+.++.+.. +|++|+| |.+|++||+++|+||+||.|++||||+++. .+...|
T Consensus 328 ~g~-------~~~~~~~p~~v~~l~~---~v~~ia~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~---~~~~~P 389 (423)
T 3mvd_K 328 LGD-------VKDVVEKPTIVKKLTE---KIVSVGC-----GEVCSYAVTIDGKLYSWGSGVNNQLGVGDG---DDELEP 389 (423)
T ss_dssp SSS-------CCSCEEEEEECTTCCS---CEEEEEE-----ETTEEEEEETTSCEEEEECCTTSCSSSSSS---CCEEEE
T ss_pred CCC-------ccccccCceEeccCCC---CEEEEEc-----CCCeEEEEcCCCCEEEECCCCCCCCCCCCC---CCcccC
Confidence 987 2233567888876632 8999999 999999999999999999999999999954 556678
Q ss_pred eEeec
Q 009463 527 ERVDI 531 (534)
Q Consensus 527 ~~v~~ 531 (534)
++|..
T Consensus 390 ~~v~~ 394 (423)
T 3mvd_K 390 IVVVS 394 (423)
T ss_dssp EECCS
T ss_pred eEEeC
Confidence 88873
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-65 Score=546.71 Aligned_cols=365 Identities=22% Similarity=0.354 Sum_probs=305.2
Q ss_pred cceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCC---cceeeceeeccC--CCCcEEEEEeCCCeEEEEecCCcEEE
Q 009463 146 ENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT---EEEWRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQVYA 220 (534)
Q Consensus 146 ~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~---~~~~~P~~v~~~--~~~~I~~Is~G~~h~~~Lt~~G~vy~ 220 (534)
.+....++..|+++++++|+||+||.|.+||||.++. .+...|+.++.+ .+.+|++|+||..|+++|+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 4555678889999999999999999999999999984 445678888766 56799999999999999999999999
Q ss_pred EecCCCCCcccCCCCee---------------------eeecCeEecc--C----CCceEEEEEecCceEEEEEcCCcEE
Q 009463 221 FGKDSFGEAEYGVQGTK---------------------LVTSPQLVES--L----KNIFVVQAAIGNFFTAVLSREGRVY 273 (534)
Q Consensus 221 wG~n~~GqlG~g~~~~~---------------------~~~~P~~v~~--l----~~~~I~~Va~G~~hs~~Lt~~G~vy 273 (534)
||.|.+||||.+..... ....|.+|+. + .+.+|++|+||..|+++|+++|+||
T Consensus 91 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy 170 (473)
T 3of7_A 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVY 170 (473)
T ss_dssp EECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred eECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEE
Confidence 99999999999864321 1457888875 5 3678999999999999999999999
Q ss_pred EEee--CCCCCCCCCCCC--CcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCC---
Q 009463 274 TFSW--GNDARLGHHTEP--NDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD--- 346 (534)
Q Consensus 274 ~wG~--n~~gqlG~~~~~--~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~--- 346 (534)
+||. +.+||||.+... ....|.++.. +.+.+|++|+||..|+++|+. +| +||+||.|.+||||.+....
T Consensus 171 ~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~ 246 (473)
T 3of7_A 171 AWGTFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDE--EG-MVFAWGNGQQNQLGRKVMERFRL 246 (473)
T ss_dssp EEECEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTSSCCCGGGTT
T ss_pred EeeCCcCCCCccCCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeC--CC-eEEEEeCCCCCCCCCCccccccc
Confidence 9998 678999985543 4556777765 667789999999999999997 89 99999999999999986544
Q ss_pred -CcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCC----CccccEEecccCCCcEEEEEec
Q 009463 347 -EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEE----CESVPKVVQALNDVKAIHVATG 421 (534)
Q Consensus 347 -~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~----~~~~P~~v~~l~~~~i~~Va~G 421 (534)
...|..+.. .+|++|+||.+|++||+++|+||+||.|.+||||.+... ....|++|..+.+.+|++|+||
T Consensus 247 ~~~~p~~~~~-----~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G 321 (473)
T 3of7_A 247 KTLDPRPFGL-----RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAG 321 (473)
T ss_dssp TTCSCEECSC-----CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEEC
T ss_pred cccCceecCC-----cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeC
Confidence 345555432 479999999999999999999999999999999998743 4578999998888899999999
Q ss_pred CceEEEEEeCCCEEEEeCCCCCCCCCCCCCCC------CCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEE
Q 009463 422 DYTTFVVSEDGDVYSFGCGESASLGHNAIADG------QGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFAL 495 (534)
Q Consensus 422 ~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~------~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~al 495 (534)
.+|++||+++|+||+||.|.+||||.+..... ..........|..+..+ .+|++|+| |.+|++||
T Consensus 322 ~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~----~~v~~Ia~-----G~~hs~al 392 (473)
T 3of7_A 322 EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV----PKFKSVAA-----GSHHSVAV 392 (473)
T ss_dssp SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS----CCEEEEEE-----CSSEEEEE
T ss_pred CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC----CceEEEEe-----CCCeEEEE
Confidence 99999999999999999999999998752110 01122334566666544 37999999 99999999
Q ss_pred EcCCCEEEEeCCCCCCCCCcCCCCCccCCCceEee
Q 009463 496 TESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 530 (534)
Q Consensus 496 t~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P~~v~ 530 (534)
+++|+||+||.|++||||+|.. ..+...|++|+
T Consensus 393 ~~~G~vy~wG~n~~GqLG~g~~--~~~~~~P~~v~ 425 (473)
T 3of7_A 393 AQNGIAYSWGFGETYAVGLGPF--EDDTEVPTRIK 425 (473)
T ss_dssp ETTSCEEEEECCTTCTTCCCSC--CSCEEEEEECC
T ss_pred eCCCcEEEeeCCCCCCCCCCCC--CccccCCeEec
Confidence 9999999999999999999952 35667788876
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-64 Score=526.34 Aligned_cols=332 Identities=32% Similarity=0.525 Sum_probs=305.8
Q ss_pred ccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCC--cEEEEEeCCCeEEEEecCCcEEEEe
Q 009463 145 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGI--RIIQAAAGAGRTMLISDAGQVYAFG 222 (534)
Q Consensus 145 ~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~--~I~~Is~G~~h~~~Lt~~G~vy~wG 222 (534)
.++++|++|..|+++|+++|+||+||.|.+||||.++.+....|.+++.+.+. ++++|+||..|+++|+++|+||+||
T Consensus 53 ~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 53 LRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp TCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred CceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 46889999999999999999999999999999999999888999999988765 4588999999999999999999999
Q ss_pred cCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccC
Q 009463 223 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 302 (534)
Q Consensus 223 ~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 302 (534)
.|.+||||.+. ......|++++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.. +.
T Consensus 133 ~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~-~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGN--RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA-LQ 209 (389)
T ss_dssp CCGGGTTCSSS--CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCCcCCCCC--CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc-cC
Confidence 99999999986 4556789999999988999999999999999999999999999999999999988888988876 77
Q ss_pred CcCEEEEEecc--eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCC
Q 009463 303 NIPVVQIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDG 380 (534)
Q Consensus 303 ~~~i~~Ia~G~--~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G 380 (534)
+.+|++|+||. .|+++|+. +| +||+||.|.+||||.+.......|.+++.+ .+.+|++|+||.+|+++|+++|
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~--~G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~v~~G~~hs~alt~~G 284 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTD--DD-TVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSG 284 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEET--TT-EEEEEECCGGGTTSSSSCCCEEEEEECGGG--TTSCEEEEEEETTEEEEEETTS
T ss_pred CCeEEEEEEcCCCcEEEEEcc--CC-EEEEEeCCCCCCCCCCCCCCccccEEeccc--CCCcEEEEeCCCCEEEEEeCCC
Confidence 88999999995 89999997 88 999999999999999998888889888765 4557999999999999999999
Q ss_pred cEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccc
Q 009463 381 RVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHAN 460 (534)
Q Consensus 381 ~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~ 460 (534)
+||+||.|.+||||.++......|++|..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+. ...
T Consensus 285 ~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~--------~~~ 356 (389)
T 3kci_A 285 AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT--------TNA 356 (389)
T ss_dssp CEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS--------CCC
T ss_pred eEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCC--------CCC
Confidence 999999999999999999999999999999989999999999999999999999999999999999987 556
Q ss_pred cccCeEeeecccccceEEEEEeeeccccccEEEEEEcCC
Q 009463 461 VLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESG 499 (534)
Q Consensus 461 ~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G 499 (534)
...|+.|+.+ .+.+|++|+| |.+|++||++++
T Consensus 357 ~~~P~~v~~~--~~~~v~~va~-----G~~ht~al~~~~ 388 (389)
T 3kci_A 357 IQRPRLVAAL--QGKKVNRVAC-----GSAHTLAWSTSK 388 (389)
T ss_dssp EEEEEECGGG--TTSCCCEEEE-----ETTEEEEECC--
T ss_pred ccCcEEeccc--CCCCEEEEEe-----cCCcEEEEecCC
Confidence 7889999877 5578999999 999999998764
No 7
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=6.1e-62 Score=510.24 Aligned_cols=334 Identities=26% Similarity=0.414 Sum_probs=289.1
Q ss_pred ccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCc--ceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEe
Q 009463 145 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTE--EEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 222 (534)
Q Consensus 145 ~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~--~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG 222 (534)
.+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|.++.. . .+|++|+||..|+++|+++|+||+||
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWG 136 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEee
Confidence 578999999999999999999999999999999998763 4567888843 3 38999999999999999999999999
Q ss_pred c--CCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCC----------
Q 009463 223 K--DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN---------- 290 (534)
Q Consensus 223 ~--n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~---------- 290 (534)
. |.+||||.+.. ......|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 137 ~~~n~~GqlG~~~~-~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 137 SFRDNNGVIGLLEP-MKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp CEEETTEEEESSBB-TBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred CCcCCCCccCcCCc-cccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 9 89999999863 2334457777 4466799999999999999999999999999999999875421
Q ss_pred -ccccccccccc----CCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEE
Q 009463 291 -DVEPHPLLGTL----ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV 365 (534)
Q Consensus 291 -~~~p~~v~~~~----~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~ 365 (534)
...|..+.... ...+|++|+||.+|+++|+. +| +||+||.|.+||||.+.......|+.+..+.....+|++
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~--~G-~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ 290 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH--EG-HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 290 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET--TC-CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeC--CC-CEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEE
Confidence 13454443311 34679999999999999997 89 999999999999999998888899998876544467999
Q ss_pred EEeCCcEEEEEecCCcEEEEECCCCCccCCC-CCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCC
Q 009463 366 VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHG-NEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESAS 444 (534)
Q Consensus 366 Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g-~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gq 444 (534)
|+||.+|+++|+++|+||+||.|.+||||.+ +......|++|+.+. +|++|+||.+|++||+++|+||+||.|.+||
T Consensus 291 ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gq 368 (413)
T 1a12_A 291 FSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQ 368 (413)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred EecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCC
Confidence 9999999999999999999999999999999 566778999998776 7999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCE
Q 009463 445 LGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKL 501 (534)
Q Consensus 445 LG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~v 501 (534)
||.++ ......|++|......+.+|++|+| |.+|++||+++|++
T Consensus 369 LG~g~--------~~~~~~P~~v~~~~~~~~~v~~v~~-----G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 369 LGTGQ--------DEDAWSPVEMMGKQLENRVVLSVSS-----GGQHTVLLVKDKEQ 412 (413)
T ss_dssp TCSSS--------CSCEEEEEECCSTTTTTEEEEEEEE-----CSSEEEEEEEECSC
T ss_pred CCCCC--------CCCcccCeEccccccCCCeEEEEee-----CCCcEEEEEecCCC
Confidence 99987 4567889888764335678999999 99999999999864
No 8
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-61 Score=506.36 Aligned_cols=312 Identities=28% Similarity=0.533 Sum_probs=289.7
Q ss_pred ccceEEEcCCCeEEEEEcCC-cEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEec
Q 009463 145 RENSQAIAGPGHSIAVTSKG-VVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK 223 (534)
Q Consensus 145 ~~i~~is~G~~h~~~l~~~G-~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~ 223 (534)
.+|++|+||..|+++|+++| +||+||.|.+||||.++..+...|.+++.+.+.+|++|+||..|+++|+++|+||+||.
T Consensus 68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~ 147 (406)
T 4d9s_A 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR 147 (406)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCC
Confidence 47899999999999999886 99999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCC
Q 009463 224 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLEN 303 (534)
Q Consensus 224 n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 303 (534)
|.+||||.+. ......|+++..+.+.+|++|+||..|+++|+++|+||+||+|.++|||.+.......|.++.. +..
T Consensus 148 n~~GqLG~g~--~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~ 224 (406)
T 4d9s_A 148 NQNGQLGLGD--TEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGG 224 (406)
T ss_dssp CTTSTTCSSS--CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCC-STT
T ss_pred CCCccCCCCC--CCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecc-cCC
Confidence 9999999986 4556789999999888999999999999999999999999999999999999888888988876 667
Q ss_pred cCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEE
Q 009463 304 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVC 383 (534)
Q Consensus 304 ~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy 383 (534)
.+|++|+||.+|+++|+. +| +||+||.|.+||||.++......|.+++.+ .+.+|++|+||.+|+++|+++|+||
T Consensus 225 ~~i~~va~G~~ht~~l~~--~G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~v~~i~~G~~hs~alt~~G~v~ 299 (406)
T 4d9s_A 225 EKMSMVACGWRHTISVSY--SG-ALYTYGWSKYGQLGHGDLEDHLIPHKLEAL--SNSFISQISGGWRHTMALTSDGKLY 299 (406)
T ss_dssp CCEEEEEECSSEEEEEET--TC-CEEEEECCTTSTTCSSSCCCEEEEEECGGG--TTSCEEEEEECSSEEEEEETTSCEE
T ss_pred ceEEEEEECCCcEEEEcC--CC-CEEEeeCCCCCCCCCCCCcCccccEEeccc--CCCCEEEEEecCCEEEEEcCCCeEE
Confidence 789999999999999997 89 999999999999999998888889988865 3457999999999999999999999
Q ss_pred EEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCcccccc
Q 009463 384 TWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLT 463 (534)
Q Consensus 384 ~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~ 463 (534)
+||.|.+||||.++......|.++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.++ ..+...
T Consensus 300 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~ 371 (406)
T 4d9s_A 300 GWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE--------SVDRNF 371 (406)
T ss_dssp EEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------CCCEEE
T ss_pred EeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCC--------CCCCcC
Confidence 999999999999998889999999988888999999999999999999999999999999999997 455678
Q ss_pred CeEeeeccc
Q 009463 464 PQLVTSLKQ 472 (534)
Q Consensus 464 P~~v~~l~~ 472 (534)
|+.|+.+..
T Consensus 372 P~~v~~l~~ 380 (406)
T 4d9s_A 372 PKIIEALSV 380 (406)
T ss_dssp EEECGGGCS
T ss_pred CEEeeeecC
Confidence 888887653
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-60 Score=506.62 Aligned_cols=330 Identities=23% Similarity=0.329 Sum_probs=283.3
Q ss_pred ccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcc-----------------------eeeceeecc--C----C
Q 009463 145 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE-----------------------EWRPRPIRS--L----Q 195 (534)
Q Consensus 145 ~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~-----------------------~~~P~~v~~--~----~ 195 (534)
.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.+|+. + .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 4789999999999999999999999999999999987654 456777775 4 3
Q ss_pred CCcEEEEEeCCCeEEEEecCCcEEEEec--CCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEE
Q 009463 196 GIRIIQAAAGAGRTMLISDAGQVYAFGK--DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 273 (534)
Q Consensus 196 ~~~I~~Is~G~~h~~~Lt~~G~vy~wG~--n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy 273 (534)
+.+|++|+||..|+++|+++|+||+||. |..||||.+.........|.+++.+.+.+|++|+||..|+++|+++|+||
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~ 226 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEE
Confidence 6799999999999999999999999998 67899999765566778899999998889999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCC----cccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCC---
Q 009463 274 TFSWGNDARLGHHTEPN----DVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD--- 346 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~--- 346 (534)
+||.|.+||||.+.... ...|.++. ..+|++|+||.+|+++|+. +| +||+||.|.+||||.+....
T Consensus 227 ~wG~n~~GqLG~~~~~~~~~~~~~p~~~~----~~~v~~Ia~G~~hs~alt~--~G-~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 227 AWGNGQQNQLGRKVMERFRLKTLDPRPFG----LRHVKYIASGENHCFALTK--DN-KLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp EEECCTTSTTSSCCCGGGTTTTCSCEECS----CCSEEEEEECSSEEEEEET--TS-CEEEEEECTTSTTCCCSCCCTTC
T ss_pred EEeCCCCCCCCCCccccccccccCceecC----CcceEEEecCCCeEEEEec--CC-CEEEeCCCCCCCcCCCCcccCCc
Confidence 99999999999986543 23344432 2579999999999999997 89 99999999999999987642
Q ss_pred -CcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCC--------------CCccccEEecccC
Q 009463 347 -EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNE--------------ECESVPKVVQALN 411 (534)
Q Consensus 347 -~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~--------------~~~~~P~~v~~l~ 411 (534)
...|+++..+ .+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|..+..+.
T Consensus 300 ~~~~P~~v~~~--~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~ 377 (473)
T 3of7_A 300 LVTKPKRLALP--DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP 377 (473)
T ss_dssp EEEEEEECCCC--TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC
T ss_pred eeecccccccc--CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC
Confidence 3567777654 3467999999999999999999999999999999998642 1234566665443
Q ss_pred CCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccE
Q 009463 412 DVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAH 491 (534)
Q Consensus 412 ~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~h 491 (534)
+|++|+||.+|++||+++|+||+||.|.+||||.+. .......|++|+.+...+.+|++|+| |.+|
T Consensus 378 --~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~-------~~~~~~~P~~v~~~~~~~~~v~~v~c-----G~~~ 443 (473)
T 3of7_A 378 --KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP-------FEDDTEVPTRIKNTATQDHNIILVGC-----GGQF 443 (473)
T ss_dssp --CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCS-------CCSCEEEEEECCCTTTTTEEEEEEEE-----CSSE
T ss_pred --ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCC-------CCccccCCeEecccccCCCeEEEEee-----CCCe
Confidence 799999999999999999999999999999999986 24567889999876656789999999 9999
Q ss_pred EEEEEc
Q 009463 492 TFALTE 497 (534)
Q Consensus 492 t~alt~ 497 (534)
++++..
T Consensus 444 s~~~~~ 449 (473)
T 3of7_A 444 SVSGGV 449 (473)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999976
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=9.2e-60 Score=495.37 Aligned_cols=328 Identities=25% Similarity=0.398 Sum_probs=280.8
Q ss_pred ccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcc--eeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEe
Q 009463 145 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE--EWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 222 (534)
Q Consensus 145 ~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~--~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG 222 (534)
.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++... .+|++|+||..|+++|+++|+||+||
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG 152 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWG 152 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEe
Confidence 3578999999999999999999999999999999998664 4667777643 37999999999999999999999999
Q ss_pred c--CCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCC-----------
Q 009463 223 K--DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEP----------- 289 (534)
Q Consensus 223 ~--n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~----------- 289 (534)
. |.+||||.+... ....|.. .+...+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 153 ~~~n~~GqlG~~~~~--~~~~p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 153 SFRDSHGNMGLTIDG--NKRTPID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp CEECSSSEEESBTTB--CEEEEEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred CCCCCCCCcCcCCCC--CCceeeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 9 999999998633 3344444 4567789999999999999999999999999999999997653
Q ss_pred CcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCC--cCceeeeecccCCCCcEEEE
Q 009463 290 NDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDE--KHPRLIEQFQLLNLQPVVVA 367 (534)
Q Consensus 290 ~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~--~~p~~i~~~~~~~~~i~~Ia 367 (534)
....|.++.. ....+|++|+||..|++++.. .+| +||+||.|.+||||.+..... ..|..+. ..+|++|+
T Consensus 229 ~~~~p~~v~~-~~~~~v~~i~~g~~~~~~~~~-~~g-~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-----~~~v~~ia 300 (423)
T 3mvd_K 229 DLLRPTQLII-TRAKPFEAIWATNYCTFMRES-QTQ-VIWATGLNNFKQLAHETKGKEFALTPIKTE-----LKDIRHIA 300 (423)
T ss_dssp TTSSCEEECC-TTCCCEEEEEEETTEEEEEET-TTC-CEEEEEECTTCTTSSCCTTCSEEEEEEEEC-----CCSEEEEE
T ss_pred cccCCeEEee-cCCccEEEEEECCcEEEEEEC-CCC-eEEEEeCCCCCcCCCCCCCCceeeeeEEcC-----CCCeEEEE
Confidence 3345666654 556689999999999999942 288 999999999999999655443 3444433 34799999
Q ss_pred eCCcEEEEEecCCcEEEEECCCCCccCCCCCCC-ccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCC
Q 009463 368 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEEC-ESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 446 (534)
Q Consensus 368 ~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG 446 (534)
||.+|+++|+++|+||+||.|.+||||.++... ...|++++.+.+ +|++|+||.+|++||+++|+||+||.|.+||||
T Consensus 301 ~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG 379 (423)
T 3mvd_K 301 GGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLG 379 (423)
T ss_dssp ECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSS
T ss_pred cccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCC
Confidence 999999999999999999999999999998654 568999988877 899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCC
Q 009463 447 HNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGK 500 (534)
Q Consensus 447 ~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~ 500 (534)
.++ ......|++|......+.+|++|+| |.+|++||+++++
T Consensus 380 ~g~--------~~~~~~P~~v~~~~~~~~~v~~va~-----G~~ht~~l~~~~k 420 (423)
T 3mvd_K 380 VGD--------GDDELEPIVVVSKNTQGKHMLLASG-----GGQHAIFLVKADK 420 (423)
T ss_dssp SSS--------SCCEEEEEECCSTTTTTCCEEEEEE-----CSSEEEEEEECC-
T ss_pred CCC--------CCCcccCeEEeCcccCCCEEEEEEE-----CCCcEEEEEcccc
Confidence 997 4567789999864446678999999 9999999999875
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=5.3e-50 Score=397.24 Aligned_cols=254 Identities=23% Similarity=0.324 Sum_probs=213.6
Q ss_pred cccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEec
Q 009463 144 RRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK 223 (534)
Q Consensus 144 ~~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~ 223 (534)
..+|++|+||..|+++|+ +|+||+||.|.+||||. |... ..+|++|+||..|+++|+ +|+||+||.
T Consensus 23 ~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~~----~~~i~~ia~G~~hs~~l~-~G~v~~wG~ 88 (282)
T 3qhy_B 23 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAAT----QSGVDAIAAGNYHSLALK-DGEVIAWGG 88 (282)
T ss_dssp SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGGG----GSCCCEEEECSSEEEEEE-TTEEEEEEC
T ss_pred cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------CccC----CCCEEEEEeCCCEEEEEE-CCEEEEeeC
Confidence 347899999999999998 99999999999999995 2222 237999999999999996 999999999
Q ss_pred CCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCC
Q 009463 224 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLEN 303 (534)
Q Consensus 224 n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 303 (534)
|.+||||.+ ..+ ..+|++|+||..|+++|+ +|+||+||.|.++|||. |.+ ..
T Consensus 89 n~~Gqlg~P----------~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~--------~~~-----~~ 140 (282)
T 3qhy_B 89 NEDGQTTVP----------AEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV--------PAE-----AQ 140 (282)
T ss_dssp CTTSTTCCC----------GGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC--------CGG-----GG
T ss_pred CCCCCCCCC----------ccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC--------Ccc-----CC
Confidence 999999863 222 236999999999999999 99999999999999984 221 12
Q ss_pred cCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEE
Q 009463 304 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVC 383 (534)
Q Consensus 304 ~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy 383 (534)
.+|++|+||..|+++|+ +| +||+||.|.+||||. |..+ ..+|++|+||.+|+++| ++|+||
T Consensus 141 ~~i~~i~~G~~~~~~l~---~G-~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v~ 201 (282)
T 3qhy_B 141 SGVTALDGGVYTALAVK---NG-GVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKVI 201 (282)
T ss_dssp SSEEEEEECSSEEEEEE---TT-EEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEEE
T ss_pred CCeEEEEcccCEEEEEE---CC-EEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeEE
Confidence 35999999999999998 78 999999999999973 3332 34799999999999999 899999
Q ss_pred EEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCcccccc
Q 009463 384 TWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLT 463 (534)
Q Consensus 384 ~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~ 463 (534)
+||.|.+||||.+. +.+ .+|++|+||.+|+++|+ +|+||+||.|.++|++..
T Consensus 202 ~wG~n~~gqlg~p~----------~~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~--------------- 253 (282)
T 3qhy_B 202 AWGDNRYKQTTVPT----------EAL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ--------------- 253 (282)
T ss_dssp EEECCTTSTTCCCG----------GGG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS---------------
T ss_pred EEECCCCCCCCCCc----------ccC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC---------------
Confidence 99999999998543 112 25889999999999999 999999999999887542
Q ss_pred CeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEE
Q 009463 464 PQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLY 502 (534)
Q Consensus 464 P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy 502 (534)
..|++|+| |..|++||+++++.+
T Consensus 254 -----------~~v~~iaa-----G~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 -----------SGVSSIEA-----GPNAAYALKGGSGSG 276 (282)
T ss_dssp -----------SCEEEEEE-----CSSCEEEEEC-----
T ss_pred -----------CCcEEEEE-----CcCeEEEEecCCCCC
Confidence 25899999 999999999998754
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3e-49 Score=391.83 Aligned_cols=251 Identities=22% Similarity=0.285 Sum_probs=211.7
Q ss_pred cEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeE
Q 009463 165 VVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQL 244 (534)
Q Consensus 165 ~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~ 244 (534)
+||+||.|...++. |.+++.+. +|++|+||..|+++|+ +|+||+||.|.+||||...
T Consensus 3 ~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~----------- 59 (282)
T 3qhy_B 3 SVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA----------- 59 (282)
T ss_dssp EEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG-----------
T ss_pred EEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc-----------
Confidence 69999999755543 23333333 7999999999999998 9999999999999998632
Q ss_pred eccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCC
Q 009463 245 VESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPS 324 (534)
Q Consensus 245 v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~ 324 (534)
....+|++|+||..|+++|+ +|+||+||.|.++|||. |.++. .+|++|+||.+|+++|+ +
T Consensus 60 ---~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~---~ 119 (282)
T 3qhy_B 60 ---ATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR-----SGVDAIAAGAWASYALK---D 119 (282)
T ss_dssp ---GGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE---T
T ss_pred ---cCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC-----CCeEEEECcCCEEEEEe---C
Confidence 11236999999999999996 99999999999999985 44332 36999999999999998 7
Q ss_pred CCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCcccc
Q 009463 325 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVP 404 (534)
Q Consensus 325 G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P 404 (534)
| +||+||.|.+||||. |.. ...+|++|+||.+|+++|+ +|+||+||.|.+||||. |
T Consensus 120 G-~v~~wG~n~~gqlg~--------~~~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p 175 (282)
T 3qhy_B 120 G-KVIAWGDDSDGQTTV--------PAE------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------P 175 (282)
T ss_dssp T-EEEEEECCTTSTTSC--------CGG------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------C
T ss_pred C-eEEEecCCCCCcCCC--------Ccc------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------c
Confidence 8 999999999999973 211 2236899999999999999 89999999999999983 2
Q ss_pred EEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeee
Q 009463 405 KVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTN 484 (534)
Q Consensus 405 ~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~ 484 (534)
..+ ..+|++|+||.+|+++| ++|+||+||.|.+||||.+. + ...+|++|+|
T Consensus 176 ~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~------------------~----~~~~v~~i~~-- 226 (282)
T 3qhy_B 176 AEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT------------------E----ALSGVSAIAS-- 226 (282)
T ss_dssp GGG----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG------------------G----GGSSCCEEEE--
T ss_pred eec----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc------------------c----cCCCceEEEc--
Confidence 222 34799999999999999 89999999999999998653 0 1135899999
Q ss_pred ccccccEEEEEEcCCCEEEEeCCCCCCCCCc
Q 009463 485 SIYWNAHTFALTESGKLYAFGAGDKGQLGIE 515 (534)
Q Consensus 485 ~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g 515 (534)
|.+|++||+ +|+||+||.|+++|++..
T Consensus 227 ---G~~h~~al~-~g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 227 ---GEWYSLALK-NGKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp ---CSSCEEEEE-TTEEEEESTTCCCCGGGS
T ss_pred ---CCCEEEEEE-CCEEEEecCCCCccccCC
Confidence 999999999 999999999999999974
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.40 E-value=0.15 Score=51.95 Aligned_cols=282 Identities=7% Similarity=0.012 Sum_probs=155.1
Q ss_pred cceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCC
Q 009463 146 ENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDS 225 (534)
Q Consensus 146 ~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~ 225 (534)
.|..++....+.+.-..||.|+.|-... ++ ....+.. ....|..++......+.-..||.|..|-...
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~-~~----------~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNT-LE----------CKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSS-CC----------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCC-Ce----------EEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 4566777667777778899999996432 11 1111211 2336888888666677778899999996542
Q ss_pred CCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcC
Q 009463 226 FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 305 (534)
Q Consensus 226 ~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 305 (534)
. ++ . ..+. .....|..++......+.-..+|.|..|-....... ...... ......
T Consensus 203 ~-~~-------~-----~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~---------~~~~~~-~~~~~~ 258 (435)
T 1p22_A 203 G-EM-------L-----NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---------TLRRVL-VGHRAA 258 (435)
T ss_dssp C-CE-------E-----EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC---------EEEEEE-CCCSSC
T ss_pred C-cE-------E-----EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc---------eeeeEe-cCCCCc
Confidence 1 10 0 0111 123457778877777778889999999954322110 000111 122335
Q ss_pred EEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEE
Q 009463 306 VVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTW 385 (534)
Q Consensus 306 i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~w 385 (534)
|..++....+.+.-. .+| .|..|-.... ..+..+......|..++......+.-..||.|..|
T Consensus 259 v~~~~~~~~~l~s~~--~dg-~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iw 321 (435)
T 1p22_A 259 VNVVDFDDKYIVSAS--GDR-TIKVWNTSTC--------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 321 (435)
T ss_dssp EEEEEEETTEEEEEE--TTS-EEEEEETTTC--------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEEEEe--CCC-eEEEEECCcC--------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 777776444444433 377 8998853211 12222222334566666667777778899999999
Q ss_pred ECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCe
Q 009463 386 GWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQ 465 (534)
Q Consensus 386 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~ 465 (534)
-.... + ....+.. ....|..++......+.-..||.|..|-......... .....
T Consensus 322 d~~~~-~----------~~~~~~~-h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~-------------~~~~~ 376 (435)
T 1p22_A 322 DIECG-A----------CLRVLEG-HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA-------------PAGTL 376 (435)
T ss_dssp ETTTC-C----------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTS-------------CTTTT
T ss_pred ECCCC-C----------EEEEEeC-CcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccc-------------cccch
Confidence 75431 1 0111111 2335677777666666677899999997422110000 00111
Q ss_pred EeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCC
Q 009463 466 LVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 510 (534)
Q Consensus 466 ~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~G 510 (534)
.+..+......|..++. .+.+-+....||.|..|-.....
T Consensus 377 ~~~~~~~h~~~v~~l~~-----~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 377 CLRTLVEHSGRVFRLQF-----DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEEEECCCSSCCCCEEE-----CSSCEEECCSSSEEEEEC-----
T ss_pred heeeccCCCCCeEEEEe-----CCCEEEEEeCCCEEEEEECCCCC
Confidence 23333333445666655 34555556789999999876543
No 14
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.27 E-value=0.28 Score=53.34 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=38.2
Q ss_pred CceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEE-EEcCCC
Q 009463 422 DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFA-LTESGK 500 (534)
Q Consensus 422 ~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~a-lt~~G~ 500 (534)
..|++++..+|+||+.|-...+. +... ......+...+. ...+...+.. ....-.+|+.+ +..+|+
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~-~~~~--------~~~~~~v~~ydp---~t~~W~~~~~-~~~~R~~hs~a~ll~dg~ 523 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGI-PFED--------STPVFTPEIYVP---EQDTFYKQNP-NSIVRVYHSISLLLPDGR 523 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCC-TTCC--------CSBCCCCEEEEG---GGTEEEECCC-CSSCCCTTEEEEECTTSC
T ss_pred ccCCeEECCCCCEEEECCcccCc-CcCC--------CCcccceEEEcC---CCCceeecCC-CCCccccccHhhcCCCcE
Confidence 36777777799999999543332 1111 011111221111 1122222221 00012356654 568999
Q ss_pred EEEEeCCCCC
Q 009463 501 LYAFGAGDKG 510 (534)
Q Consensus 501 vy~wG~n~~G 510 (534)
||..|.+.++
T Consensus 524 v~v~GG~~~~ 533 (656)
T 1k3i_A 524 VFNGGGGLCG 533 (656)
T ss_dssp EEEEECCCCT
T ss_pred EEecCCCCCC
Confidence 9999998665
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.19 E-value=1.3 Score=44.91 Aligned_cols=268 Identities=8% Similarity=-0.009 Sum_probs=148.1
Q ss_pred EEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCC
Q 009463 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGE 228 (534)
Q Consensus 149 ~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~Gq 228 (534)
.++.-....+.-..||.|+.|-....-. ...+.. ....|..++......+.-..||.|+.|-.... +
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~ 190 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKC-----------LRTLVG-HTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-E 190 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCE-----------EEECCC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTT-E
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcE-----------EEEEcC-CCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-c
Confidence 4444455566667899999997542110 111111 22357777766777777788999999965321 1
Q ss_pred cccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEE
Q 009463 229 AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQ 308 (534)
Q Consensus 229 lG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ 308 (534)
. . ..+. .....|..++......+.-+.+|.|+.|-...... ...+. .....|..
T Consensus 191 --------~-~---~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~--~~~~~v~~ 244 (445)
T 2ovr_B 191 --------C-I---HTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM--GHVAAVRC 244 (445)
T ss_dssp --------E-E---EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE--CCSSCEEE
T ss_pred --------E-E---EEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc--CCcccEEE
Confidence 0 0 1111 12334777777777777888999999995432110 00111 22334666
Q ss_pred EEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECC
Q 009463 309 IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWG 388 (534)
Q Consensus 309 Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n 388 (534)
++......+.-. .+| .|+.|-... ...+..+......|..++....+.+.-..+|.|+.|-..
T Consensus 245 ~~~~~~~l~~~~--~dg-~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 245 VQYDGRRVVSGA--YDF-MVKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp EEECSSCEEEEE--TTS-CEEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETT
T ss_pred EEECCCEEEEEc--CCC-EEEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECC
Confidence 666444433333 377 888885321 122222322334566777777778888889999999754
Q ss_pred CCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEee
Q 009463 389 RYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVT 468 (534)
Q Consensus 389 ~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~ 468 (534)
.... ...+.. ....+..++......+.-..||.|+.|-...... ...+.
T Consensus 308 ~~~~-----------~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------~~~~~ 356 (445)
T 2ovr_B 308 TGNC-----------IHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-------------------LQTLQ 356 (445)
T ss_dssp TCCE-----------EEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-------------------EEEEC
T ss_pred CCCE-----------EEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-------------------EEEEc
Confidence 3111 111111 1224556666666666677899999996432110 01111
Q ss_pred ecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCC
Q 009463 469 SLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 508 (534)
Q Consensus 469 ~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~ 508 (534)
........|..++. ...+.++-..||.|..|-...
T Consensus 357 ~~~~~~~~v~~~~~-----~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 357 GPNKHQSAVTCLQF-----NKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp STTSCSSCEEEEEE-----CSSEEEEEETTSEEEEEETTT
T ss_pred cCCCCCCCEEEEEE-----CCCEEEEEeCCCeEEEEECCC
Confidence 11112344666665 445666667788888887654
No 16
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.10 E-value=1 Score=42.97 Aligned_cols=282 Identities=12% Similarity=0.057 Sum_probs=133.1
Q ss_pred EcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCC-eEEEEecCCcEEEEecCCCCCc
Q 009463 151 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG-RTMLISDAGQVYAFGKDSFGEA 229 (534)
Q Consensus 151 s~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~-h~~~Lt~~G~vy~wG~n~~Gql 229 (534)
..+.-.++++..||+.++++......+....... ..+..... ....|..++.... ..++...+|.|..|-.......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-ARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-EEEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc-cccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce
Confidence 3344567788899999998875544333222111 11111111 2224555554322 2344444888888865432211
Q ss_pred ccCCCCeeeeecCeEecc-CCCceEEEEEecC--ceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCE
Q 009463 230 EYGVQGTKLVTSPQLVES-LKNIFVVQAAIGN--FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPV 306 (534)
Q Consensus 230 G~g~~~~~~~~~P~~v~~-l~~~~I~~Va~G~--~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i 306 (534)
.. ...+.. -....|..++... ...++-..+|.|+.|-..... ... ..........|
T Consensus 86 ~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~-~~~~~~~~~~i 144 (337)
T 1gxr_A 86 SP----------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRI-KAELTSSAPAC 144 (337)
T ss_dssp SC----------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EE-EEEEECSSSCE
T ss_pred ee----------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cce-eeecccCCCce
Confidence 00 001110 1233466665543 344555678999988543210 000 00111223346
Q ss_pred EEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC--CcEEEEEecCCcEEE
Q 009463 307 VQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCT 384 (534)
Q Consensus 307 ~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~ 384 (534)
..++...+...+++...+| .|+.|-.... ..+..+......|..++.. ....+....+|.|+.
T Consensus 145 ~~~~~~~~~~~l~~~~~dg-~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDG-NIAVWDLHNQ--------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp EEEEECTTSSEEEEEETTS-CEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEECCCCCEEEEEeCCC-cEEEEeCCCC--------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 6666544433333333477 8888853211 1122222223345555543 446666678999999
Q ss_pred EECCCCCccCCCCCCCccccEEecccCCCcEEEEEe--cCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccc
Q 009463 385 WGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT--GDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVL 462 (534)
Q Consensus 385 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~--G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~ 462 (534)
|-...... ...+.. ...+..++. .....++-..+|.|+.|-.....
T Consensus 210 ~d~~~~~~-----------~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------------- 257 (337)
T 1gxr_A 210 WDLREGRQ-----------LQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------------- 257 (337)
T ss_dssp EETTTTEE-----------EEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------------------
T ss_pred EECCCCce-----------EeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-------------------
Confidence 96533110 111111 223444443 23344445567888888643210
Q ss_pred cCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCC
Q 009463 463 TPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDK 509 (534)
Q Consensus 463 ~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~ 509 (534)
.. .+......+..++.. - -+..-++...+|.|+.|-....
T Consensus 258 ---~~-~~~~~~~~v~~~~~~--~-~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 258 ---KY-QLHLHESCVLSLKFA--Y-CGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp ---EE-EECCCSSCEEEEEEC--T-TSSEEEEEETTSEEEEEETTTC
T ss_pred ---eE-EEcCCccceeEEEEC--C-CCCEEEEecCCCcEEEEECCCC
Confidence 01 111123345555541 1 1234555667888888876543
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.42 E-value=2.6 Score=42.53 Aligned_cols=229 Identities=10% Similarity=0.023 Sum_probs=131.0
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEee
Q 009463 198 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW 277 (534)
Q Consensus 198 ~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~ 277 (534)
.|..++..+...+.-..||.|..|-... +++ ...+. -....|..++......+.-..||.|..|-.
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~-~~~------------~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNT-LEC------------KRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSS-CCE------------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEES
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCC-CeE------------EEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEEC
Confidence 4666776667777778899999996432 110 01111 123357777776666677788999999954
Q ss_pred CCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecc
Q 009463 278 GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ 357 (534)
Q Consensus 278 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~ 357 (534)
.....+ ..+. .....|..++......+.-. .+| .|+.|-..... .......+.
T Consensus 201 ~~~~~~-----------~~~~--~h~~~v~~l~~~~~~l~s~s--~dg-~i~vwd~~~~~-----------~~~~~~~~~ 253 (435)
T 1p22_A 201 NTGEML-----------NTLI--HHCEAVLHLRFNNGMMVTCS--KDR-SIAVWDMASPT-----------DITLRRVLV 253 (435)
T ss_dssp SSCCEE-----------EEEC--CCCSCEEEEECCTTEEEEEE--TTS-CEEEEECSSSS-----------CCEEEEEEC
T ss_pred CCCcEE-----------EEEc--CCCCcEEEEEEcCCEEEEee--CCC-cEEEEeCCCCC-----------CceeeeEec
Confidence 332110 0111 22345777776655433333 478 89988532211 111111122
Q ss_pred cCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEE
Q 009463 358 LLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 437 (534)
Q Consensus 358 ~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~w 437 (534)
.....|..++....+.+.-..||.|..|-....- ....+.. ....|..++......++-..||.|+.|
T Consensus 254 ~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iw 321 (435)
T 1p22_A 254 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLW 321 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 2334566777777777888889999999753311 1111111 223566666666677777789999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeC
Q 009463 438 GCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 506 (534)
Q Consensus 438 G~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~ 506 (534)
-.... ..+..+......|..++. ...+.+.-..||.|..|-.
T Consensus 322 d~~~~----------------------~~~~~~~~h~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 322 DIECG----------------------ACLRVLEGHEELVRCIRF-----DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ETTTC----------------------CEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEEH
T ss_pred ECCCC----------------------CEEEEEeCCcCcEEEEEe-----cCCEEEEEeCCCcEEEEEC
Confidence 64321 112222223345666665 4456666778999999964
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.40 E-value=0.03 Score=51.93 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=58.8
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEee
Q 009463 198 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW 277 (534)
Q Consensus 198 ~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~ 277 (534)
.|.+|+....|..++--|+++|++|+++.||+-... ...+..++.+|..+++-+..-+.+-.||.
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~---------------tagPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD---------------HAGPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG---------------GGCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCC---------------CcchHHhHhccCCeEEEEeceeeEEEecC
Confidence 577889999999999999999999999999986643 12347899999999999999999999997
Q ss_pred CCCCC
Q 009463 278 GNDAR 282 (534)
Q Consensus 278 n~~gq 282 (534)
.....
T Consensus 375 SPDNS 379 (400)
T 4gbf_A 375 SPDNS 379 (400)
T ss_dssp CTTST
T ss_pred CCCcc
Confidence 66443
No 19
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.87 E-value=3.5 Score=41.02 Aligned_cols=148 Identities=12% Similarity=-0.030 Sum_probs=82.1
Q ss_pred eEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC--CCeEEEEecCCcEEEEecCC
Q 009463 148 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDS 225 (534)
Q Consensus 148 ~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G--~~h~~~Lt~~G~vy~wG~n~ 225 (534)
..++....+.++...+|.|+.|-... |+ ....+.......|..|+.. +.+.++-+.+|.|+.|-...
T Consensus 97 ~~~~~s~~~l~~~~~d~~v~lw~~~~-~~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 97 NLLDWSNLNVVAVALERNVYVWNADS-GS----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTT-CC----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEeecCCCEEEEECCCeEEEeeCCC-Cc----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 34555567788888999999997543 11 1111211123356666653 34555566789999996532
Q ss_pred CCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcC
Q 009463 226 FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 305 (534)
Q Consensus 226 ~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 305 (534)
... ...+. .....|..++......+.-..+|.|+.|-...... ....+. .....
T Consensus 166 ~~~-------------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~--~~~~~ 219 (401)
T 4aez_A 166 QTK-------------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQ--GHSSE 219 (401)
T ss_dssp CCE-------------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEE--CCSSC
T ss_pred CeE-------------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEc--CCCCC
Confidence 110 01111 12345777777667777788899999995432111 011111 22335
Q ss_pred EEEEEecceeEEEeeeeCCCCeEEEeee
Q 009463 306 VVQIAAGYCYLLALACQPSGMAVYSVGC 333 (534)
Q Consensus 306 i~~Ia~G~~~~~~lt~~~~G~~vy~wG~ 333 (534)
|..++...+...+++...+| .|+.|-.
T Consensus 220 v~~~~~~~~~~~l~s~~~d~-~v~iwd~ 246 (401)
T 4aez_A 220 VCGLAWRSDGLQLASGGNDN-VVQIWDA 246 (401)
T ss_dssp EEEEEECTTSSEEEEEETTS-CEEEEET
T ss_pred eeEEEEcCCCCEEEEEeCCC-eEEEccC
Confidence 66666654444444444477 8888853
No 20
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=94.29 E-value=0.1 Score=48.41 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=58.7
Q ss_pred cEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEE
Q 009463 414 KAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTF 493 (534)
Q Consensus 414 ~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~ 493 (534)
.+..|+.-..|++++--++++|.||+++.||+-... ......++.+ |..+++
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~-----------------------tagPfla~~A-----G~~fTV 361 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD-----------------------HAGPYIQLAA-----GHNFTV 361 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-----------------------GGCCEEEEEE-----CSSEEE
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCC-----------------------CcchHHhHhc-----cCCeEE
Confidence 467788888999999999999999999999987655 1233678899 999999
Q ss_pred EEEcCCCEEEEeCCCCCCC
Q 009463 494 ALTESGKLYAFGAGDKGQL 512 (534)
Q Consensus 494 alt~~G~vy~wG~n~~GqL 512 (534)
-+..-..+--||+.-...|
T Consensus 362 TVn~~nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 362 TVNTLNQVMFWGDSPDNSL 380 (400)
T ss_dssp EEETTCCEEEEECCTTSTT
T ss_pred EEeceeeEEEecCCCCcce
Confidence 9999999999998755554
No 21
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.16 E-value=5.6 Score=43.33 Aligned_cols=18 Identities=6% Similarity=-0.256 Sum_probs=14.7
Q ss_pred CcEEEEEecCCcEEEEEC
Q 009463 370 AWHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 370 ~~hs~alt~~G~vy~wG~ 387 (534)
..|++++..+|++|.+|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 568888877799999984
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.03 E-value=2.3 Score=45.93 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=39.0
Q ss_pred CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEE----ecCceEEE-EEeCCCEEEEeCCCCC
Q 009463 370 AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA----TGDYTTFV-VSEDGDVYSFGCGESA 443 (534)
Q Consensus 370 ~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va----~G~~~t~a-lt~~G~vy~wG~n~~g 443 (534)
..|++++..+|+||+.|-...+. +.+.......+..... ...+...+. .-.+|+++ +..+|+||+.|.+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~-~~~~~~~~~~v~~ydp-~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGI-PFEDSTPVFTPEIYVP-EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCC-TTCCCSBCCCCEEEEG-GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCc-CcCCCCcccceEEEcC-CCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 45887888899999998544332 1111111222222221 111222222 23467644 5679999999987654
No 23
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=92.61 E-value=6.6 Score=36.64 Aligned_cols=186 Identities=15% Similarity=0.080 Sum_probs=98.3
Q ss_pred CcEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEe---cCceEEEEEcCCcEE
Q 009463 197 IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI---GNFFTAVLSREGRVY 273 (534)
Q Consensus 197 ~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~---G~~hs~~Lt~~G~vy 273 (534)
..|..++......+....+|.|+.|-. ++ .. ..+. .....+..++. .....+.-..+|.|+
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~--------~~----~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 168 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---GS--------LV----YNLQ-AHNASVWDAKVVSFSENKFLTASADKTIK 168 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---TE--------EE----EEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---Cc--------EE----Eecc-cCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence 367777777777778888999999951 10 00 0011 11223444443 456667778899999
Q ss_pred EEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceee
Q 009463 274 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 353 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i 353 (534)
.|-.. .+...........|..++......++ +...+| .|+.|-.... ..+
T Consensus 169 i~d~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg-~i~i~d~~~~--------------~~~ 218 (313)
T 3odt_A 169 LWQND--------------KVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDG-LIKLVDMHTG--------------DVL 218 (313)
T ss_dssp EEETT--------------EEEEEECSSCSSCEEEEEEEETTEEE-EEETTS-EEEEEETTTC--------------CEE
T ss_pred EEecC--------------ceEEEEeccCcccEEEEEEcCCCeEE-EccCCC-eEEEEECCch--------------hhh
Confidence 88411 01111111133346666554433333 333477 8888853221 122
Q ss_pred eecccCCCCcEEEEeCCc-EEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCc-eEEEEEeC
Q 009463 354 EQFQLLNLQPVVVAAGAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSED 431 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G~~-hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~-~t~alt~~ 431 (534)
..+......|..++.... ..++...+|.|+.|-.... .....+. .....|..++.-.+ ..++-..|
T Consensus 219 ~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~d 286 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-----------SLKQVIT-LPAISIWSVDCMSNGDIIVGSSD 286 (313)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-----------CEEEEEE-CSSSCEEEEEECTTSCEEEEETT
T ss_pred hhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC-----------ceeEEEe-ccCceEEEEEEccCCCEEEEeCC
Confidence 222223334555554422 5666678999999964321 0111111 22335666665332 35566788
Q ss_pred CCEEEEeCC
Q 009463 432 GDVYSFGCG 440 (534)
Q Consensus 432 G~vy~wG~n 440 (534)
|.|+.|=..
T Consensus 287 g~i~iw~~~ 295 (313)
T 3odt_A 287 NLVRIFSQE 295 (313)
T ss_dssp SCEEEEESC
T ss_pred CcEEEEeCC
Confidence 999999754
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.05 E-value=9.6 Score=37.22 Aligned_cols=196 Identities=15% Similarity=0.061 Sum_probs=90.6
Q ss_pred EEEEEec-CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEe
Q 009463 253 VVQAAIG-NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSV 331 (534)
Q Consensus 253 I~~Va~G-~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~w 331 (534)
|..++-. ....++-..+|.|..|-......+. .......-....|..++...+-..+++...+| .|..|
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~---------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-~v~iw 166 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLL---------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-SVKVW 166 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------C---------CCCEEECCCSSCEEEEEECSSSSEEEEEETTS-CEEEE
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeE---------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-eEEEE
Confidence 5555543 2344555678888887322111000 00011101233577777665544555544577 88888
Q ss_pred eeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC---CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEec
Q 009463 332 GCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQ 408 (534)
Q Consensus 332 G~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G---~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~ 408 (534)
-... ...+..+......|..|+.. ....+.-..||.|..|-......+ ..+.
T Consensus 167 d~~~--------------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~-----------~~~~ 221 (357)
T 4g56_B 167 DLSQ--------------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA-----------TRID 221 (357)
T ss_dssp ETTT--------------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB-----------CBCC
T ss_pred ECCC--------------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee-----------eeee
Confidence 4221 22232332233345556542 234555677899999843221100 0000
Q ss_pred -ccCCCcEEEEEecC--ceEEE-EEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeee
Q 009463 409 -ALNDVKAIHVATGD--YTTFV-VSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTN 484 (534)
Q Consensus 409 -~l~~~~i~~Va~G~--~~t~a-lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~ 484 (534)
......+..|+... .+.++ -..+|.|+.|-... +..+..+......|..++.
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~----------------------~~~~~~~~~~~~~v~~l~~-- 277 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN----------------------PDSAQTSAVHSQNITGLAY-- 277 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC----------------------GGGCEEECCCSSCEEEEEE--
T ss_pred eccccccccchhhhhcccceEEEeecccceeEEECCC----------------------CcEeEEEeccceeEEEEEE--
Confidence 01122455555431 23333 36788999985321 1111122223345555554
Q ss_pred ccccccEEEEEEcCCCEEEEeCC
Q 009463 485 SIYWNAHTFALTESGKLYAFGAG 507 (534)
Q Consensus 485 ~~~G~~ht~alt~~G~vy~wG~n 507 (534)
+-.|...-+.-..||.|+.|=..
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTT
T ss_pred cCCCCCEEEEEeCCCEEEEEECC
Confidence 11132333345678999999543
No 25
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.93 E-value=4.7 Score=43.94 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=32.5
Q ss_pred CeEEEEEc-CCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEE----EeCCCeEEEEecCCcEEEEecC
Q 009463 155 GHSIAVTS-KGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQA----AAGAGRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 155 ~h~~~l~~-~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~I----s~G~~h~~~Lt~~G~vy~wG~n 224 (534)
.|++++.. +|++|++|-.....--..+ -....|. ..+...+ ..-..|++++-.+|+||.+|-.
T Consensus 442 ~hs~~~~~~~~~lyv~GG~~~~~~~~~d-v~~yd~~------t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 442 CHTFTTISRNNQLLLIGGRKAPHQGLSD-NWIFDMK------TREWSMIKSLSHTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp SCEEEEETTTTEEEEECCBSSTTCBCCC-CEEEETT------TTEEEECCCCSBCCBSCEEEECTTSCEEEECCB
T ss_pred ceEEEEEccCCEEEEEcCCCCCCCcccc-EEEEeCC------CCcEEECCCCCCCcccceEEEEcCCEEEEECCC
Confidence 67887776 9999999943211100001 0011110 0011111 1224577777568999999854
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=91.81 E-value=11 Score=37.61 Aligned_cols=227 Identities=8% Similarity=-0.059 Sum_probs=125.5
Q ss_pred ceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCC
Q 009463 147 NSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSF 226 (534)
Q Consensus 147 i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~ 226 (534)
|..++......+.-..||.|+.|-.... .....+.. ....|..++......+....||.|+.|-....
T Consensus 162 v~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 162 VWSSQMRDNIIISGSTDRTLKVWNAETG-----------ECIHTLYG-HTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEESSSC
T ss_pred EEEEEecCCEEEEEeCCCeEEEEECCcC-----------cEEEEECC-CCCcEEEEEecCCEEEEEeCCCEEEEEECCCC
Confidence 3344443444555567788888854321 01111111 22357777777777788889999999965421
Q ss_pred CCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCE
Q 009463 227 GEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPV 306 (534)
Q Consensus 227 GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i 306 (534)
.. . ..+. .....|..++......+.-..+|.|+.|-...... ...+. .....|
T Consensus 230 ~~--------~-----~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~--~~~~~v 282 (445)
T 2ovr_B 230 QC--------L-----HVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC-----------LHTLQ--GHTNRV 282 (445)
T ss_dssp CE--------E-----EEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE-----------EEEEC--CCSSCE
T ss_pred cE--------E-----EEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcE-----------eEEec--CCCCce
Confidence 10 0 0111 12334666777667777788899999995332110 00111 123357
Q ss_pred EEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEE
Q 009463 307 VQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWG 386 (534)
Q Consensus 307 ~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG 386 (534)
..++....+.+.-. .+| .|+.|-.... ..+..+......+..++......+.-..+|.|+.|-
T Consensus 283 ~~~~~~~~~l~~~~--~d~-~i~i~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 283 YSLQFDGIHVVSGS--LDT-SIRVWDVETG--------------NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD 345 (445)
T ss_dssp EEEEECSSEEEEEE--TTS-CEEEEETTTC--------------CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEEEECCCEEEEEe--CCC-eEEEEECCCC--------------CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEE
Confidence 77776444433333 377 8888853221 112222223334556666666777778899999997
Q ss_pred CCCCCccCCCCCCCccccEEeccc--CCCcEEEEEecCceEEEEEeCCCEEEEeCC
Q 009463 387 WGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGDYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 387 ~n~~GqLG~g~~~~~~~P~~v~~l--~~~~i~~Va~G~~~t~alt~~G~vy~wG~n 440 (534)
..... ....+... ....|..++....+.+.-..||.|+.|-..
T Consensus 346 ~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 346 IKTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 53311 11112111 233577777766776777789999999743
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.68 E-value=8.5 Score=35.86 Aligned_cols=270 Identities=9% Similarity=-0.025 Sum_probs=130.5
Q ss_pred cceEEEc-CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEe--CCCeEEEEecCCcEEEEe
Q 009463 146 ENSQAIA-GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA--GAGRTMLISDAGQVYAFG 222 (534)
Q Consensus 146 ~i~~is~-G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~--G~~h~~~Lt~~G~vy~wG 222 (534)
.|..++. .....+....||.|+.|-... ......+.. ....|..++. .....+.-..+|.|..|-
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~-----------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDD-----------QWLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESS-----------SEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCC-----------CEEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 4444443 223344556889999996432 111111211 1224544443 344555666778887775
Q ss_pred cCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccC
Q 009463 223 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 302 (534)
Q Consensus 223 ~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 302 (534)
-..... . .+..........|..++......+.-..+|.|+.|- .+ .+.... ...
T Consensus 88 ~~~~~~---~--------~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~-----------~~~~~~-~~~ 141 (313)
T 3odt_A 88 LFATSG---E--------DPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---EG-----------SLVYNL-QAH 141 (313)
T ss_dssp TTCCTT---S--------CC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE---TT-----------EEEEEE-ECC
T ss_pred eeecCC---C--------CcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc---CC-----------cEEEec-ccC
Confidence 432110 0 010000112345777777677777788999999984 10 011111 122
Q ss_pred CcCEEEEEecc-eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeeccc-CCCCcEEEEeC-CcEEEEEecC
Q 009463 303 NIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL-LNLQPVVVAAG-AWHAAVVGQD 379 (534)
Q Consensus 303 ~~~i~~Ia~G~-~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~-~~~~i~~Ia~G-~~hs~alt~~ 379 (534)
...+..++.-. ....+++...+| .|+.|-. + ..+..+.. ....+..++.. ....++-..+
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~---~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 204 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADK-TIKLWQN---D-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSND 204 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTS-CEEEEET---T-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETT
T ss_pred CCceeEEEEccCCCCEEEEEECCC-CEEEEec---C-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCC
Confidence 33455555422 112222223477 8888831 0 11111111 12233333322 2236667789
Q ss_pred CcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCc-eEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCc
Q 009463 380 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRH 458 (534)
Q Consensus 380 G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~-~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~ 458 (534)
|.|+.|-...... ...+. .....|..++...+ ..++-..+|.|+.|-...
T Consensus 205 g~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~----------------- 255 (313)
T 3odt_A 205 GLIKLVDMHTGDV-----------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN----------------- 255 (313)
T ss_dssp SEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTT-----------------
T ss_pred CeEEEEECCchhh-----------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCC-----------------
Confidence 9999997543110 11111 12234666655433 455566788899985321
Q ss_pred cccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCC
Q 009463 459 ANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 508 (534)
Q Consensus 459 ~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~ 508 (534)
...+..+......|..++.. -.| ..++...||.|+.|=...
T Consensus 256 -----~~~~~~~~~~~~~i~~~~~~--~~~--~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 256 -----GSLKQVITLPAISIWSVDCM--SNG--DIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp -----CCEEEEEECSSSCEEEEEEC--TTS--CEEEEETTSCEEEEESCG
T ss_pred -----CceeEEEeccCceEEEEEEc--cCC--CEEEEeCCCcEEEEeCCC
Confidence 11122222233456666551 112 356678899999997654
No 28
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.54 E-value=9.9 Score=36.31 Aligned_cols=211 Identities=6% Similarity=-0.077 Sum_probs=102.8
Q ss_pred ccceEEEcC------CCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeecc-CCCCcEEEEEeCCC------eEEE
Q 009463 145 RENSQAIAG------PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LQGIRIIQAAAGAG------RTML 211 (534)
Q Consensus 145 ~~i~~is~G------~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~-~~~~~I~~Is~G~~------h~~~ 211 (534)
..|..|+.- ....++...+|.|..|-......+ ........ .....|..++.... ..+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 355555543 555777778889999975432111 11111111 12234666554333 4555
Q ss_pred EecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec---CceEEEEEcCCcEEEEeeCCCCCCCCCCC
Q 009463 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREGRVYTFSWGNDARLGHHTE 288 (534)
Q Consensus 212 Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~ 288 (534)
-..||.|..|-.... + .. ..+. -....|..++.. ....+.-..+|.|+.|-......
T Consensus 91 ~~~dg~i~v~d~~~~-~---------~~---~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------ 150 (366)
T 3k26_A 91 AGSRGIIRIINPITM-Q---------CI---KHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL------ 150 (366)
T ss_dssp EETTCEEEEECTTTC-C---------EE---EEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE------
T ss_pred ecCCCEEEEEEchhc-e---------Ee---eeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE------
Confidence 668899999964321 1 00 1111 123347777664 34556667899999995432110
Q ss_pred CCcccccccc-cccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccC-------CCC--CCCcCc-----eee
Q 009463 289 PNDVEPHPLL-GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGH-------GSR--TDEKHP-----RLI 353 (534)
Q Consensus 289 ~~~~~p~~v~-~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~-------g~~--~~~~~p-----~~i 353 (534)
...+. .......|..++...+...+++...+| .|+.|-......+.. ... .....+ ...
T Consensus 151 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 151 -----VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp -----EEEECSTTSCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred -----EEEecccccccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 00110 012334577777655444444444577 999986432111100 000 000000 000
Q ss_pred eecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCC
Q 009463 354 EQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGR 389 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~ 389 (534)
.........|..++......+.-..+|.|..|-...
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 111112223444444466777778899999997644
No 29
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.02 E-value=12 Score=36.39 Aligned_cols=247 Identities=10% Similarity=0.009 Sum_probs=119.4
Q ss_pred ccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC------C---CeEEEEecC
Q 009463 145 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG------A---GRTMLISDA 215 (534)
Q Consensus 145 ~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G------~---~h~~~Lt~~ 215 (534)
..|..|+......+.-..||.|+.|-...... .........+.. ....|..++.. + ...+....+
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 45666776666666667899999997643210 000001111111 22346655543 2 344455678
Q ss_pred CcEEEEecCCCCCcccCCCCeeeeecCeEeccCC----CceEEEEEec------Cce-EEEEEcCCcEEEEeeCC-----
Q 009463 216 GQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK----NIFVVQAAIG------NFF-TAVLSREGRVYTFSWGN----- 279 (534)
Q Consensus 216 G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~----~~~I~~Va~G------~~h-s~~Lt~~G~vy~wG~n~----- 279 (534)
|.|+.|-...... ........+.... ...|..++.. ..+ .++-..+|.|+.|-...
T Consensus 91 g~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 91 GDLLFYRITREDE--------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp SCEEEEEEEECTT--------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred CCEEEEEccCCcc--------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 8888886432110 0000011122221 2346666554 444 55567899999996544
Q ss_pred -CCCCCCCCCCCccccc-cccc-----ccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCcee
Q 009463 280 -DARLGHHTEPNDVEPH-PLLG-----TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 352 (534)
Q Consensus 280 -~gqlG~~~~~~~~~p~-~v~~-----~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~ 352 (534)
...+. ..|. .+.. ......|..++...+. ++++...+| .|+.|-... ...
T Consensus 163 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~i~i~d~~~--------------~~~ 219 (397)
T 1sq9_A 163 NSLTLN-------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-TVQISELST--------------LRP 219 (397)
T ss_dssp HHTTTC-------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-EEEEEETTT--------------TEE
T ss_pred ccceee-------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-cEEEEECCC--------------Cce
Confidence 11111 1111 1110 1223446666665544 444444577 899885322 112
Q ss_pred eeeccc---C---CCCcEEEEe--CCcEEEEEecC---CcEEEEECCCCCccCCCCCCCccccEEeccc-----------
Q 009463 353 IEQFQL---L---NLQPVVVAA--GAWHAAVVGQD---GRVCTWGWGRYGCLGHGNEECESVPKVVQAL----------- 410 (534)
Q Consensus 353 i~~~~~---~---~~~i~~Ia~--G~~hs~alt~~---G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l----------- 410 (534)
+..+.. . ...|..++. ...+.++-..+ |.|+.|-...... ...+...
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----------IGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----------EEEECBC--------CCB
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----------cceeccCccccccccccc
Confidence 222221 1 334555544 34455566677 8899997543211 1111110
Q ss_pred -CCCcEEEEEec--CceEEEEEeCCCEEEEeC
Q 009463 411 -NDVKAIHVATG--DYTTFVVSEDGDVYSFGC 439 (534)
Q Consensus 411 -~~~~i~~Va~G--~~~t~alt~~G~vy~wG~ 439 (534)
....|..++.. ....+.-..||.|+.|-.
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 12345565553 334444567888999964
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=90.75 E-value=12 Score=35.75 Aligned_cols=201 Identities=7% Similarity=-0.048 Sum_probs=92.9
Q ss_pred cceEEEcCC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC--CCeEEEEecCCcEEEE
Q 009463 146 ENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAF 221 (534)
Q Consensus 146 ~i~~is~G~--~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G--~~h~~~Lt~~G~vy~w 221 (534)
.|..++... ...+.-..||.|+.|-.... .....+.. ....|..++.. ....+....||.|+.|
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 455555433 33344457888999954321 11112221 22356666654 3455666788999999
Q ss_pred ecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec--CceEEEEEcC-----CcEEEEeeCCCCCCCCCCCCCcccc
Q 009463 222 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSRE-----GRVYTFSWGNDARLGHHTEPNDVEP 294 (534)
Q Consensus 222 G~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~~Lt~~-----G~vy~wG~n~~gqlG~~~~~~~~~p 294 (534)
-...... .. .+. ....|..++.. ....++...+ |.|+.|-.........-........
T Consensus 102 d~~~~~~----------~~---~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 102 DVSNGQC----------VA---TWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp ETTTCCE----------EE---EEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred ECCCCcE----------EE---Eee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 6532110 00 011 12234444443 3344455555 8888886544322111000000000
Q ss_pred cccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEe--CCcE
Q 009463 295 HPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWH 372 (534)
Q Consensus 295 ~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~--G~~h 372 (534)
..+........+..++...+...+++...+| .|+.|-.... ...+..+......|..++. ....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDG-KISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTS-EEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSSE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCC-EEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCCE
Confidence 1111111112466665544433344433477 8888853221 1122222222334555544 3445
Q ss_pred EEEEecCCcEEEEEC
Q 009463 373 AAVVGQDGRVCTWGW 387 (534)
Q Consensus 373 s~alt~~G~vy~wG~ 387 (534)
.++...+|.|+.|-.
T Consensus 233 l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 233 FITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEETTSEEEEEET
T ss_pred EEEecCCceEEEEEC
Confidence 566677888999864
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.69 E-value=28 Score=40.11 Aligned_cols=186 Identities=12% Similarity=0.001 Sum_probs=82.4
Q ss_pred CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecC-ceEEEEEcCCcEEEEeeCCCCCCC
Q 009463 206 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-FFTAVLSREGRVYTFSWGNDARLG 284 (534)
Q Consensus 206 ~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~-~hs~~Lt~~G~vy~wG~n~~gqlG 284 (534)
+...+....||.|..|-.... ++ . .+. .....|..++... ...++...+|.|+.|-......
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~-~~---------~----~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-- 1077 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTG-DY---------V----FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI-- 1077 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTT-EE---------E----CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC--
T ss_pred CCEEEEEcCCCEEEEEECCCC-ce---------E----EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce--
Confidence 334555567888888865321 10 0 000 1122355555433 3455667889999885432110
Q ss_pred CCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcE
Q 009463 285 HHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPV 364 (534)
Q Consensus 285 ~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~ 364 (534)
...+. .....|..++...+...+++...+| .|+.|-..... .+..+......|.
T Consensus 1078 ---------~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~-~v~iwd~~~~~--------------~~~~l~~h~~~v~ 1131 (1249)
T 3sfz_A 1078 ---------ERDFT--CHQGTVLSCAISSDATKFSSTSADK-TAKIWSFDLLS--------------PLHELKGHNGCVR 1131 (1249)
T ss_dssp ---------CEEEE--CCSSCCCCEEECSSSSSCEEECCSS-CCCEECSSSSS--------------CSBCCCCCSSCEE
T ss_pred ---------eEEEc--ccCCcEEEEEECCCCCEEEEEcCCC-cEEEEECCCcc--------------eeeeeccCCCcEE
Confidence 00111 1122244444333322233333366 77777432111 1111111222344
Q ss_pred EEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEec---ccCCCcEEEEEecCceEEEEEeCCCEEEEeC
Q 009463 365 VVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQ---ALNDVKAIHVATGDYTTFVVSEDGDVYSFGC 439 (534)
Q Consensus 365 ~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~---~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~ 439 (534)
.++.. ....+.-..||.|+.|-......+.. ..|.... ......|..++...+...+++.+|.|+.|-.
T Consensus 1132 ~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~ 1205 (1249)
T 3sfz_A 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNV 1205 (1249)
T ss_dssp EEEECSSSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceEEE------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEEC
Confidence 44433 33555556788899997543221111 1111000 0112235555554444444555688888864
Q ss_pred C
Q 009463 440 G 440 (534)
Q Consensus 440 n 440 (534)
.
T Consensus 1206 ~ 1206 (1249)
T 3sfz_A 1206 A 1206 (1249)
T ss_dssp S
T ss_pred C
Confidence 3
No 32
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=90.54 E-value=12 Score=35.61 Aligned_cols=193 Identities=10% Similarity=-0.036 Sum_probs=100.9
Q ss_pred CCcEEEEEeCCC-----eEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec--CceEEEEEc
Q 009463 196 GIRIIQAAAGAG-----RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSR 268 (534)
Q Consensus 196 ~~~I~~Is~G~~-----h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~~Lt~ 268 (534)
...|..|+.... ..+.-..||.|..|-....++. ....+.. ....|..++.. ....+.-..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------IPKAQQM-HTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------EEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------eEEEecc-ccCCEEEEEECcCCCEEEEEcC
Confidence 347888887664 3444567899999976532221 0011111 13346666654 335556678
Q ss_pred CCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEe--cceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCC
Q 009463 269 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 346 (534)
Q Consensus 269 ~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~--G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~ 346 (534)
+|.|..|-..... ...+. .....|..++. ..+..++++...+| .|+.|=....
T Consensus 107 dg~v~iwd~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~---------- 161 (368)
T 3mmy_A 107 DKTAKMWDLSSNQ------------AIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSS---------- 161 (368)
T ss_dssp TSEEEEEETTTTE------------EEEEE--ECSSCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCS----------
T ss_pred CCcEEEEEcCCCC------------ceeec--cccCceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCC----------
Confidence 9999999543211 11111 23345777775 44444444444577 8998843211
Q ss_pred CcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccC--CCcEEEEEecCce
Q 009463 347 EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHVATGDYT 424 (534)
Q Consensus 347 ~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~i~~Va~G~~~ 424 (534)
..+..+. ....+..+..-....++.+.++.++.|-...... ....+.... ...+..+......
T Consensus 162 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 162 ----NPMMVLQ-LPERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp ----SCSEEEE-CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTS
T ss_pred ----cEEEEEe-cCCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCC
Confidence 1111111 1224455555566778888899999997643211 111111111 1223333333322
Q ss_pred ----EEEEEeCCCEEEEeCC
Q 009463 425 ----TFVVSEDGDVYSFGCG 440 (534)
Q Consensus 425 ----t~alt~~G~vy~wG~n 440 (534)
.++-..+|.|..|-..
T Consensus 227 ~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 227 KPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp CEEEEEEEETTSEEEEEESS
T ss_pred CCCeEEEecCCCcEEEEecC
Confidence 5666788999999754
No 33
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.23 E-value=19 Score=35.94 Aligned_cols=263 Identities=12% Similarity=0.049 Sum_probs=120.2
Q ss_pred ccceEEEcCCC---eEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC---CCeEEEEecCCcE
Q 009463 145 RENSQAIAGPG---HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG---AGRTMLISDAGQV 218 (534)
Q Consensus 145 ~~i~~is~G~~---h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G---~~h~~~Lt~~G~v 218 (534)
..|..++.-.. ..+....+|.|+.|-.......-. ......|...-......|..++.. ....+.-..+|.|
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 35556665543 233335689999998654211100 000011111101111234444432 2255556678999
Q ss_pred EEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec---CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccc
Q 009463 219 YAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 295 (534)
Q Consensus 219 y~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 295 (534)
+.|-.+...... .. ..+..........|..|+.. ....+....+|.|+.|-...... ..+.
T Consensus 207 ~vwd~~~~~~~~------~~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~ 270 (430)
T 2xyi_A 207 CLWDINATPKEH------RV-IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPS 270 (430)
T ss_dssp EEEETTSCCBGG------GE-EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCS
T ss_pred EEEeCCCCCCCC------ce-eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccce
Confidence 999765422110 11 11111111223347777763 34455567899999995443210 0111
Q ss_pred ccccccCCcCEEEEEecceeE-EEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCC---c
Q 009463 296 PLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---W 371 (534)
Q Consensus 296 ~v~~~~~~~~i~~Ia~G~~~~-~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~---~ 371 (534)
.... .....|..|+...... ++++...+| .|..|-....++ | +..+......|..|+... .
T Consensus 271 ~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~-----------~--~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 271 HTVD-AHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKL-----------K--LHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp EEEE-CCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTS-----------C--SEEEECCSSCEEEEEECSSCTT
T ss_pred eEee-cCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCC-----------C--eEEeecCCCCEEEEEECCCCCC
Confidence 1110 2233466666654332 333333577 888886432111 1 111222233455555432 3
Q ss_pred EEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccC--CCcEEEEEecCc---eEEEEEeCCCEEEEeCC
Q 009463 372 HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHVATGDY---TTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 372 hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~i~~Va~G~~---~t~alt~~G~vy~wG~n 440 (534)
..+.-..+|.|..|-....+..-.........|..+.... ...|..++-... ..+....+|.|..|-..
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 3555567899999976543221100000001122322222 224666665332 44455678888888743
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.32 E-value=22 Score=33.31 Aligned_cols=200 Identities=10% Similarity=0.003 Sum_probs=95.7
Q ss_pred EeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCc-eEEEEEcCCcEEEEeeCCCC
Q 009463 203 AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGRVYTFSWGNDA 281 (534)
Q Consensus 203 s~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~-hs~~Lt~~G~vy~wG~n~~g 281 (534)
..+.-..++++.||++++.+......+.... .....+..... ....|..++.... ..++...+|.|..|-.....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGI---PRHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTC---CSEEEEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEecccc---CCccccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCC
Confidence 3445567889999999988875443332221 11111111111 1233555554322 23344448899988544322
Q ss_pred CCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCC
Q 009463 282 RLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNL 361 (534)
Q Consensus 282 qlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~ 361 (534)
... . ...+........|..++...+...+++...+| .|+.|-.... .+.....+.....
T Consensus 84 ~~~------~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~------------~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 84 NKS------P--VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-TLSIWDLAAP------------TPRIKAELTSSAP 142 (337)
T ss_dssp CCS------C--SEEEECSCTTSBEEEEEECTTSSEEEEEESSS-EEEEEECCCC--------------EEEEEEECSSS
T ss_pred cee------e--eecccccCCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEECCCC------------CcceeeecccCCC
Confidence 110 0 00111001233466666655443344433477 8888853211 1112222222333
Q ss_pred CcEEEEe--CCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEec--CceEEEEEeCCCEEEE
Q 009463 362 QPVVVAA--GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSF 437 (534)
Q Consensus 362 ~i~~Ia~--G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G--~~~t~alt~~G~vy~w 437 (534)
.|..++. ...+.+.-..+|.|+.|-..... ....+.. ....|..++.. ....++...+|.|+.|
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 4545443 34566667788999999753311 1111111 12345555553 3344455678889998
Q ss_pred eC
Q 009463 438 GC 439 (534)
Q Consensus 438 G~ 439 (534)
-.
T Consensus 211 d~ 212 (337)
T 1gxr_A 211 DL 212 (337)
T ss_dssp ET
T ss_pred EC
Confidence 64
No 35
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=85.80 E-value=30 Score=34.49 Aligned_cols=203 Identities=7% Similarity=-0.069 Sum_probs=104.8
Q ss_pred cEEEEEeC----CCeEEEEecCCcEEEEecCCCCCcccCC---CCeeeee----cCeEecc--CCCceEEEEEecCceEE
Q 009463 198 RIIQAAAG----AGRTMLISDAGQVYAFGKDSFGEAEYGV---QGTKLVT----SPQLVES--LKNIFVVQAAIGNFFTA 264 (534)
Q Consensus 198 ~I~~Is~G----~~h~~~Lt~~G~vy~wG~n~~GqlG~g~---~~~~~~~----~P~~v~~--l~~~~I~~Va~G~~hs~ 264 (534)
.|..++.. ....+.-..||.|..|-........... ....... .|..+.. -....|..++......+
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 284 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEE
Confidence 45555432 2456666788999999765432211100 0000000 0101111 12334677777777778
Q ss_pred EEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCC
Q 009463 265 VLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSR 344 (534)
Q Consensus 265 ~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~ 344 (534)
.-..+|.|+.|-..... +.... ......|..++...+...+++...|| .|+.|-...
T Consensus 285 ~~~~d~~i~vwd~~~~~------------~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~--------- 341 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMK------------CLYIL-SGHTDRIYSTIYDHERKRCISASMDT-TIRIWDLEN--------- 341 (464)
T ss_dssp EEETTSCEEEEETTTTE------------EEEEE-CCCSSCEEEEEEETTTTEEEEEETTS-CEEEEETTT---------
T ss_pred EEeCCCeEEEEECCCCc------------EEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCC---------
Confidence 88889999999543211 11110 01233466666654433344444577 888885321
Q ss_pred CCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCce
Q 009463 345 TDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYT 424 (534)
Q Consensus 345 ~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~ 424 (534)
...+..+......|..++....+.+.-..||.|..|-.....+ ...........+..+.....
T Consensus 342 -----~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~- 404 (464)
T 3v7d_B 342 -----GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN- 404 (464)
T ss_dssp -----TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS-
T ss_pred -----CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC-
Confidence 1223333333445667777778888889999999997654211 11111122234444554443
Q ss_pred EEEEEeCCCEEEEeCC
Q 009463 425 TFVVSEDGDVYSFGCG 440 (534)
Q Consensus 425 t~alt~~G~vy~wG~n 440 (534)
.++...+|.|+.|=..
T Consensus 405 ~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 405 ILVSGSENQFNIYNLR 420 (464)
T ss_dssp EEEEEETTEEEEEETT
T ss_pred EEEEecCCeEEEEECC
Confidence 4445558899999643
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=84.86 E-value=26 Score=32.83 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=89.9
Q ss_pred cceEEEcCC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCC--eEEEEecCCcEEEE
Q 009463 146 ENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAF 221 (534)
Q Consensus 146 ~i~~is~G~--~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~--h~~~Lt~~G~vy~w 221 (534)
.|..++... ...+.-..||.|..|.... ++ ....+.. ....|..++.... ..+.-..||.|..|
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYD-GK----------FEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT-CC----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCC-cc----------cchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 444444332 3444455789999997532 11 1111111 1224666655433 44455678888888
Q ss_pred ecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec--CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccccccc
Q 009463 222 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 299 (534)
Q Consensus 222 G~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 299 (534)
-...... . ..+.. ....|..++.. ....+.-..+|.|+.|-...... ...+.
T Consensus 93 d~~~~~~----------~---~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~- 146 (312)
T 4ery_A 93 DVSSGKC----------L---KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------LKTLP- 146 (312)
T ss_dssp ETTTCCE----------E---EEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-
T ss_pred ECCCCcE----------E---EEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------EEEec-
Confidence 6432110 0 01111 12234444443 23445556789999884322100 00111
Q ss_pred ccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEE--EeCCcEEEEEe
Q 009463 300 TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVVG 377 (534)
Q Consensus 300 ~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~I--a~G~~hs~alt 377 (534)
....+|..++...+..++++...+| .|..|-......+ ..+. ......+..+ +-...+.++-.
T Consensus 147 -~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 147 -AHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCL-----------KTLI--DDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEE-----------EEEC--CSSCCCEEEEEECTTSSEEEEEE
T ss_pred -CCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcee-----------eEEe--ccCCCceEEEEECCCCCEEEEEc
Confidence 2233466666654444444444577 8888853211100 0110 0111123333 33345666777
Q ss_pred cCCcEEEEECC
Q 009463 378 QDGRVCTWGWG 388 (534)
Q Consensus 378 ~~G~vy~wG~n 388 (534)
.+|.|..|-..
T Consensus 212 ~d~~i~iwd~~ 222 (312)
T 4ery_A 212 LDNTLKLWDYS 222 (312)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 89999999753
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=83.60 E-value=30 Score=32.70 Aligned_cols=159 Identities=10% Similarity=-0.022 Sum_probs=81.8
Q ss_pred CcEEEEEeC------CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCc------eEE
Q 009463 197 IRIIQAAAG------AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF------FTA 264 (534)
Q Consensus 197 ~~I~~Is~G------~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~------hs~ 264 (534)
..|..|+.. ....++...+|.|..|-......+ .... ..........|..++.... ..+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------RLLQ--SYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------EEEE--EEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------Eeee--eccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 367777765 455777777888888865432211 0000 0000112234555555433 455
Q ss_pred EEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecc-eeEEEeeeeCCCCeEEEeeeCCCccccCCC
Q 009463 265 VLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGS 343 (534)
Q Consensus 265 ~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~-~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~ 343 (534)
.-..+|.|+.|-...... ...+. .....|..++... +..++++...+| .|+.|-......
T Consensus 90 ~~~~dg~i~v~d~~~~~~-----------~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~----- 150 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQC-----------IKHYV--GHGNAINELKFHPRDPNLLLSVSKDH-ALRLWNIQTDTL----- 150 (366)
T ss_dssp EEETTCEEEEECTTTCCE-----------EEEEE--SCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTTTEE-----
T ss_pred EecCCCEEEEEEchhceE-----------eeeec--CCCCcEEEEEECCCCCCEEEEEeCCC-eEEEEEeecCeE-----
Confidence 567889999884332100 11111 2334577777654 333444444578 999985322111
Q ss_pred CCCCcCceeeeecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCC
Q 009463 344 RTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGR 389 (534)
Q Consensus 344 ~~~~~~p~~i~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~ 389 (534)
...+..+......|..++.. ..+.+....+|.|+.|-...
T Consensus 151 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 151 ------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp ------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred ------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 11111012233355555543 44666667899999997643
No 38
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=83.38 E-value=37 Score=33.53 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=56.0
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCC--CeEEEEecCCcEEEEecCCCC
Q 009463 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYAFGKDSFG 227 (534)
Q Consensus 150 is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~--~h~~~Lt~~G~vy~wG~n~~G 227 (534)
|+.+....+++.-|+.||.|=... |+ ......+.. ....|..|+... .+.+.-+.||.|..|-....-
T Consensus 111 l~wS~~n~lAvgld~tV~lWd~~t-g~--------~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 111 VDWSSGNVLAVALDNSVYLWSASS-GD--------ILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp EEECTTSEEEEEETTEEEEEETTT-CC--------EEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEECCCCEEEEEeCCEEEEEECCC-CC--------EEEEEEecC-CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 444456678888899999996432 21 111111111 123477776543 344455678888888654211
Q ss_pred CcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEe
Q 009463 228 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFS 276 (534)
Q Consensus 228 qlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG 276 (534)
. . ..+. -....+..++......+.-..++.++.|-
T Consensus 181 ~----------~---~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 181 R----------L---RNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp E----------E---EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred E----------E---EEEe-CCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 0 0 1111 12334666666655556667788888774
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=82.97 E-value=37 Score=33.23 Aligned_cols=150 Identities=10% Similarity=-0.047 Sum_probs=81.7
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEee
Q 009463 253 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 332 (534)
Q Consensus 253 I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG 332 (534)
+..++-...+.++...+|.|+.|-..... ............|..++...+...+++...+| .|+.|-
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd 162 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNG-LVDIYD 162 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCC-eEEEEE
Confidence 44455555677888899999999543211 11111101234577776654433344433477 888885
Q ss_pred eCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCC
Q 009463 333 CGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALND 412 (534)
Q Consensus 333 ~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~ 412 (534)
.... ..+..+......|..++......+.-..+|.|+.|-....+. ....+. ...
T Consensus 163 ~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~-~~~ 217 (401)
T 4aez_A 163 VESQ--------------TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQ-GHS 217 (401)
T ss_dssp TTTC--------------CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEE-CCS
T ss_pred CcCC--------------eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEc-CCC
Confidence 3221 122222223445667776667777778899999997643211 011111 122
Q ss_pred CcEEEEEec--CceEEEEEeCCCEEEEeCC
Q 009463 413 VKAIHVATG--DYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 413 ~~i~~Va~G--~~~t~alt~~G~vy~wG~n 440 (534)
..|..++.. ....+.-..||.|+.|-..
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 345555543 2344445678999999754
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=82.70 E-value=36 Score=32.86 Aligned_cols=28 Identities=14% Similarity=0.206 Sum_probs=18.1
Q ss_pred CcEEEEeC--CcEEEEEecCCcEEEEECCC
Q 009463 362 QPVVVAAG--AWHAAVVGQDGRVCTWGWGR 389 (534)
Q Consensus 362 ~i~~Ia~G--~~hs~alt~~G~vy~wG~n~ 389 (534)
.|..++.. ....+.-..+|.|+.|-...
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 45555543 45666667889999997543
No 41
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=81.61 E-value=36 Score=32.14 Aligned_cols=151 Identities=8% Similarity=-0.050 Sum_probs=82.8
Q ss_pred CceEEEEEecCc-----eEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCC
Q 009463 250 NIFVVQAAIGNF-----FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPS 324 (534)
Q Consensus 250 ~~~I~~Va~G~~-----hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~ 324 (534)
...|..++.... ..+.-..+|.|+.|-....++. ....+. .....|..++...+...+++...+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------IPKAQQ--MHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------EEEEEE--ECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------eEEEec--cccCCEEEEEECcCCCEEEEEcCC
Confidence 456888887654 4445567899999965432210 011111 223457777765544444444457
Q ss_pred CCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEe--C-C-cEEEEEecCCcEEEEECCCCCccCCCCCCC
Q 009463 325 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--G-A-WHAAVVGQDGRVCTWGWGRYGCLGHGNEEC 400 (534)
Q Consensus 325 G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~--G-~-~hs~alt~~G~vy~wG~n~~GqLG~g~~~~ 400 (534)
| .|..|-..... +..+ ......|..++. . . ...+.-..+|.|+.|-....-
T Consensus 108 g-~v~iwd~~~~~------------~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------- 162 (368)
T 3mmy_A 108 K-TAKMWDLSSNQ------------AIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN--------- 162 (368)
T ss_dssp S-EEEEEETTTTE------------EEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS---------
T ss_pred C-cEEEEEcCCCC------------ceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc---------
Confidence 8 89998533211 1111 113334556653 2 2 345555678999999643211
Q ss_pred ccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCC
Q 009463 401 ESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 401 ~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n 440 (534)
.-..+.. ...+..+..-....++.+.++.++.|-..
T Consensus 163 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 163 --PMMVLQL--PERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp --CSEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred --EEEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 1111221 12455566666777888889999999754
No 42
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=79.77 E-value=51 Score=32.71 Aligned_cols=204 Identities=9% Similarity=-0.002 Sum_probs=97.9
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC---CCeEEEEecCCcEEEEecCCCCCcccC
Q 009463 156 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG---AGRTMLISDAGQVYAFGKDSFGEAEYG 232 (534)
Q Consensus 156 h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G---~~h~~~Lt~~G~vy~wG~n~~GqlG~g 232 (534)
+.+.-..+|.|+.|-.+..+... ....+..........|..|+.. ....+....+|.|+.|-.......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--- 267 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--- 267 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS---
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC---
Confidence 44555578999999766422111 1111111111223357777763 344555668999999976532110
Q ss_pred CCCeeeeecCeEeccCCCceEEEEEecC---ceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEE
Q 009463 233 VQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 309 (534)
Q Consensus 233 ~~~~~~~~~P~~v~~l~~~~I~~Va~G~---~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I 309 (534)
.+..........|..|+... ...+.-..+|.|..|-.....+ +..... .....|..|
T Consensus 268 --------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~~~~-~h~~~v~~i 327 (430)
T 2xyi_A 268 --------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLHSFE-SHKDEIFQV 327 (430)
T ss_dssp --------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSEEEE-CCSSCEEEE
T ss_pred --------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeEEee-cCCCCEEEE
Confidence 01100011223466666543 2244456789999996543221 111110 123457777
Q ss_pred Eeccee-EEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCc---EEEEEecCCcEEEE
Q 009463 310 AAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW---HAAVVGQDGRVCTW 385 (534)
Q Consensus 310 a~G~~~-~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~---hs~alt~~G~vy~w 385 (534)
+..... .++++...+| .|..|-....+............|..+..+......|..++-... ..+....+|.|..|
T Consensus 328 ~~sp~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 328 QWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp EECSSCTTEEEEEETTS-CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred EECCCCCCEEEEEeCCC-cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 765543 2333433477 888886443221100000000112333333323334656554422 55666778888888
Q ss_pred ECC
Q 009463 386 GWG 388 (534)
Q Consensus 386 G~n 388 (534)
-..
T Consensus 407 ~~~ 409 (430)
T 2xyi_A 407 QMA 409 (430)
T ss_dssp EEC
T ss_pred Ecc
Confidence 653
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=79.05 E-value=54 Score=32.58 Aligned_cols=243 Identities=9% Similarity=0.018 Sum_probs=121.1
Q ss_pred EEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCc-eEEEEEcCCcEEEEee
Q 009463 199 IIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGRVYTFSW 277 (534)
Q Consensus 199 I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~-hs~~Lt~~G~vy~wG~ 277 (534)
+..++......+.-..||.|..|-.... + . ...+. -....|..++.... ..+.-..||.|..|-.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~-~---------~---~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK-K---------F---LLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT-E---------E---EEEEC-CCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC-c---------E---EEEEe-CCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 3445555566666788999999964321 1 0 00111 12334666665433 4555678999999954
Q ss_pred CCCCCCCCCCCCCcccccccccccCCcCEEEEEec--ceeEEEeeeeCCCCeEEEeeeCCCccccCCCCC---------C
Q 009463 278 GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG--YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT---------D 346 (534)
Q Consensus 278 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G--~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~---------~ 346 (534)
..... ...+. .....|..++.. .+...+++...+| .|+.|-............. .
T Consensus 191 ~~~~~-----------~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 191 KKGCC-----------THVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDN-TLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp TTTEE-----------EEEEC--CCSSCEEEEEEEESSSCEEEEEEETTS-CEEEEECCCCCCC------CCSSEEESCG
T ss_pred CCCcE-----------EEEEC--CCCCccEEEEEecCCCCCEEEEEcCCC-cEEEeeCCCCcccccccccCCcceEeecc
Confidence 32110 11111 123346555543 2223333444578 9999865433222110000 0
Q ss_pred CcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEec--Cce
Q 009463 347 EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYT 424 (534)
Q Consensus 347 ~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G--~~~ 424 (534)
...+..+..+......+..++......+.-..+|.|+.|-...... ...+. .....|..++.. ...
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC-----------LYILS-GHTDRIYSTIYDHERKR 324 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTTTE
T ss_pred CCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEec-CCCCCEEEEEEcCCCCE
Confidence 0111122233333445667776677788888999999997532110 11111 112245555543 234
Q ss_pred EEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEE
Q 009463 425 TFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAF 504 (534)
Q Consensus 425 t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~w 504 (534)
.+.-..||.|+.|-... ...+..+......|..+.. ...+-+....||.|..|
T Consensus 325 l~sg~~dg~i~vwd~~~----------------------~~~~~~~~~h~~~v~~~~~-----~~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 325 CISASMDTTIRIWDLEN----------------------GELMYTLQGHTALVGLLRL-----SDKFLVSAAADGSIRGW 377 (464)
T ss_dssp EEEEETTSCEEEEETTT----------------------TEEEEEECCCSSCEEEEEE-----CSSEEEEEETTSEEEEE
T ss_pred EEEEeCCCcEEEEECCC----------------------CcEEEEEeCCCCcEEEEEE-----cCCEEEEEeCCCcEEEE
Confidence 55556788999996432 1122222223344555555 33455555667777777
Q ss_pred eCCC
Q 009463 505 GAGD 508 (534)
Q Consensus 505 G~n~ 508 (534)
-.+.
T Consensus 378 d~~~ 381 (464)
T 3v7d_B 378 DAND 381 (464)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 6544
No 44
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=76.05 E-value=90 Score=33.60 Aligned_cols=190 Identities=13% Similarity=0.017 Sum_probs=92.1
Q ss_pred cEEEEEeCCC--eEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEe--cCceEEEEEcCCcEE
Q 009463 198 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVY 273 (534)
Q Consensus 198 ~I~~Is~G~~--h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~~Lt~~G~vy 273 (534)
.|..++...+ ..++-..+|.|..|-.... + . ...+.. ....|..++. .....++-+.+|.|+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~---------~---~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-V---------E---VRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT-E---------E---EEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCC-c---------e---EEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 4555554433 3444456888888854321 1 0 011111 1223444443 344566667899999
Q ss_pred EEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceee
Q 009463 274 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 353 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i 353 (534)
.|-...... ...+. .....|..++...+...+++...+| .|..|-..... ..+
T Consensus 81 vw~~~~~~~-----------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~-------------~~~ 133 (814)
T 3mkq_A 81 VFNYNTGEK-----------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNW-------------ALE 133 (814)
T ss_dssp EEETTTCCE-----------EEEEE--CCSSCEEEEEECSSSSEEEEEETTS-EEEEEEGGGTS-------------EEE
T ss_pred EEECCCCcE-----------EEEEe--cCCCCEEEEEEeCCCCEEEEEcCCC-EEEEEECCCCc-------------eEE
Confidence 996443211 11111 1233477777665554444544577 88888532211 111
Q ss_pred eecccCCCCcEEEEeC---CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEeccc--CCCcEEEEEe--cCceEE
Q 009463 354 EQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVAT--GDYTTF 426 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G---~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~i~~Va~--G~~~t~ 426 (534)
..+......|..++.. ....+.-..+|.|+.|-..... ....+... .....+.... .....+
T Consensus 134 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 1122223345555543 3455566788999999753211 11111111 1222333332 334445
Q ss_pred EEEeCCCEEEEeC
Q 009463 427 VVSEDGDVYSFGC 439 (534)
Q Consensus 427 alt~~G~vy~wG~ 439 (534)
+-..+|.|+.|-.
T Consensus 203 ~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 203 TASDDLTIKIWDY 215 (814)
T ss_dssp EECTTSEEEEEET
T ss_pred EEeCCCEEEEEEC
Confidence 5567888999853
No 45
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=75.84 E-value=93 Score=33.67 Aligned_cols=189 Identities=13% Similarity=0.005 Sum_probs=94.1
Q ss_pred EEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC----CCeEEEEecCCcEEEEecCCCCCcccC
Q 009463 157 SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAGQVYAFGKDSFGEAEYG 232 (534)
Q Consensus 157 ~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G----~~h~~~Lt~~G~vy~wG~n~~GqlG~g 232 (534)
.+.-..||.|..|-... ........+.. ....|..++.. ....+....||.|+.|-.... +
T Consensus 24 latg~~dg~I~vwd~~~---------~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~---- 88 (753)
T 3jro_A 24 LATCSSDKTIKIFEVEG---------ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R---- 88 (753)
T ss_dssp EEEEETTTEEEEEEEET---------TEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-E----
T ss_pred EEEEECCCcEEEEecCC---------CCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-c----
Confidence 33445789999995321 01111111111 22367777764 445666778999999964321 0
Q ss_pred CCCeeeeecCeEeccCCCceEEEEEec----CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEE
Q 009463 233 VQGTKLVTSPQLVESLKNIFVVQAAIG----NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQ 308 (534)
Q Consensus 233 ~~~~~~~~~P~~v~~l~~~~I~~Va~G----~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ 308 (534)
..+..........|..++.. ....+.-+.+|.|+.|-....... ....+. .....|..
T Consensus 89 -------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~~~~~--~~~~~v~~ 150 (753)
T 3jro_A 89 -------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SPIIID--AHAIGVNS 150 (753)
T ss_dssp -------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CCEEEE--CCSSCEEE
T ss_pred -------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ceeEee--cCCCceEE
Confidence 00111111123346677665 345666788999999954432110 011111 22234666
Q ss_pred EEecc-------------eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC-----C
Q 009463 309 IAAGY-------------CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-----A 370 (534)
Q Consensus 309 Ia~G~-------------~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G-----~ 370 (534)
++... +...+++...+| .|+.|-..... .....+..+......|..++.. .
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~~----------~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDA----------QTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTS-CEEEEEEETTT----------TEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EEecCcccccccccccCCCCCEEEEEECCC-eEEEEeccCCc----------ccceeeeeecCCCCcEEEEEeccCCCCC
Confidence 65543 122333333477 88888543211 0111222222233345566554 3
Q ss_pred cEEEEEecCCcEEEEECCC
Q 009463 371 WHAAVVGQDGRVCTWGWGR 389 (534)
Q Consensus 371 ~hs~alt~~G~vy~wG~n~ 389 (534)
...+.-..+|.|+.|-...
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEEEESSSCEEEEEESS
T ss_pred CEEEEEecCCEEEEecCCC
Confidence 4555667799999996543
No 46
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.61 E-value=55 Score=30.86 Aligned_cols=217 Identities=14% Similarity=0.041 Sum_probs=113.1
Q ss_pred eEEEEEe--cCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEec---ceeEEEeeeeCCCC
Q 009463 252 FVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG---YCYLLALACQPSGM 326 (534)
Q Consensus 252 ~I~~Va~--G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G---~~~~~~lt~~~~G~ 326 (534)
.+..+.. ...+.+++|++|++|.---.. +-... ...+ ..++.+|+.+.+- ..+.+++|. +|
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~~------~~~l--l~~~e~i~~v~~~~~~~~~~v~~T~--~G- 90 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQGS------KVSL--KSREEKIVGAFIREKFGNRLLLATK--KG- 90 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHH---HHTSE------ECCC--SSTTCCEEEEEEGGGSCSEEEEEET--TS-
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccCc------cccc--CCCCCEEEEEECCcCCCCEEEEEeC--CC-
Confidence 3444433 345688999999999542111 00000 0002 1356678887662 235666665 78
Q ss_pred eEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEE--eCCcEEEEEecCCcEEEEECCCCCccCCCCCCCcccc
Q 009463 327 AVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVA--AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVP 404 (534)
Q Consensus 327 ~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia--~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P 404 (534)
.+.-.--..+-+- ......-.+. .+..++.+. .+..+.+++|++|++|.+-..+.-.+|.......
T Consensus 91 ~iKr~~l~~~~~~--------~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~--- 158 (276)
T 3no0_A 91 YVKKIPLAEFEYK--------AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ--- 158 (276)
T ss_dssp EEEEEEGGGTTTC--------STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE---
T ss_pred EEEEEEHHHhhhh--------cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE---
Confidence 7776543332210 0011111111 122344332 3456799999999999997655544443322111
Q ss_pred EEecccCCCcEEEEEec--CceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEe
Q 009463 405 KVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISL 482 (534)
Q Consensus 405 ~~v~~l~~~~i~~Va~G--~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~ 482 (534)
.+....+.+|+.+... ....+++|++|.+.-.=..++-..+.+. .. +..+ ..+..++.+..
T Consensus 159 -~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~g--------kG-------v~~i-~~~~~lv~~~~ 221 (276)
T 3no0_A 159 -GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGV--------KG-------TEVS-GTKDTLVDLIP 221 (276)
T ss_dssp -CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTC--------CC-------EECC-CSSSCEEEEEE
T ss_pred -EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCC--------cc-------eEEE-cCCCcEEEEEE
Confidence 1222345567766543 3467788999988877655543333321 00 0011 12233444433
Q ss_pred eeccccccEEEEEEcCCCEEE--EeCCCCCCCCC
Q 009463 483 TNSIYWNAHTFALTESGKLYA--FGAGDKGQLGI 514 (534)
Q Consensus 483 ~~~~~G~~ht~alt~~G~vy~--wG~n~~GqLG~ 514 (534)
. .+....+++|++|++.. +-.++--.+|.
T Consensus 222 ~---~~~~~i~~~t~~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 222 I---KEEVELLITTKNGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp E---SSEEEEEEEETTSCEEEEEEEGGGSCBCCT
T ss_pred e---CCCCEEEEEcCCCeEEEeeeCHHHCCCcCC
Confidence 1 15568888999999999 75554444443
No 47
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=74.90 E-value=64 Score=31.36 Aligned_cols=156 Identities=17% Similarity=0.040 Sum_probs=78.3
Q ss_pred EEeCCCeEEEE---ecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec---CceEEEEEcCCcEEEE
Q 009463 202 AAAGAGRTMLI---SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREGRVYTF 275 (534)
Q Consensus 202 Is~G~~h~~~L---t~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~~Lt~~G~vy~w 275 (534)
+++......++ ..+|.|+.|-.+..|.+... .+ .+.. ....|..++.. ....+.-..||.|..|
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~--------~~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN--------VP-LVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT--------CC-CBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC--------Cc-eEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 44455554443 45789999976544332110 00 0111 13346777664 3455556789999999
Q ss_pred eeCCCCCCCCCCCCCcccccccccccCCcCEEEEEeccee-EEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeee
Q 009463 276 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIE 354 (534)
Q Consensus 276 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~-~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~ 354 (534)
-......... ...+.... ......|..++..... .++++...|| .|+.|-.... ..+.
T Consensus 110 ~~~~~~~~~~-----~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~--------------~~~~ 168 (402)
T 2aq5_A 110 EIPDGGLVLP-----LREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDN-VILVWDVGTG--------------AAVL 168 (402)
T ss_dssp ECCTTCCSSC-----BCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTS-CEEEEETTTT--------------EEEE
T ss_pred EccCCCCccc-----cCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCC-EEEEEECCCC--------------CccE
Confidence 6544321110 00111111 1233457777776554 3444444577 8999853221 1121
Q ss_pred ec--ccCCCCcEEEEeC--CcEEEEEecCCcEEEEECC
Q 009463 355 QF--QLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWG 388 (534)
Q Consensus 355 ~~--~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n 388 (534)
.+ ......|..++.. ....+.-..||.|+.|-..
T Consensus 169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 22 1122345455443 3455556678999999653
No 48
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=71.09 E-value=74 Score=30.41 Aligned_cols=305 Identities=10% Similarity=0.026 Sum_probs=142.2
Q ss_pred cccceEEEcCC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceee-------ccCCCCcEEEEEe---CCCeEE
Q 009463 144 RRENSQAIAGP---GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPI-------RSLQGIRIIQAAA---GAGRTM 210 (534)
Q Consensus 144 ~~~i~~is~G~---~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v-------~~~~~~~I~~Is~---G~~h~~ 210 (534)
...|..++... ...+....||.|..|-........ ......+ .......|..++. +....+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS------YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS------CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc------eEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 34566666543 444455679999999755422211 1111000 0112336777775 344566
Q ss_pred EEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecC-----ceEEEEEcCCcEEEEeeCCCCCCCC
Q 009463 211 LISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSREGRVYTFSWGNDARLGH 285 (534)
Q Consensus 211 ~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~-----~hs~~Lt~~G~vy~wG~n~~gqlG~ 285 (534)
....+|.|..|-.... + .. ..+.. ...+..+.... ...++-..+|.|+.|-......+
T Consensus 117 s~~~d~~i~iwd~~~~-~---------~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-- 179 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTL-Q---------TA---DVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-- 179 (408)
T ss_dssp EEETTSEEEEEETTTT-E---------EE---EEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--
T ss_pred EEeCCCeEEEeeCCCC-c---------cc---eeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--
Confidence 6677999999965421 1 00 00111 11233443322 24556678899999954321110
Q ss_pred CCCCCcccccccccccCCcCEEEEEecceeE-EEeeeeCCCCeEEEeeeCCCcc-ccCCCCCC-CcCceeeeecccCCCC
Q 009463 286 HTEPNDVEPHPLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGK-LGHGSRTD-EKHPRLIEQFQLLNLQ 362 (534)
Q Consensus 286 ~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~-~~lt~~~~G~~vy~wG~n~~gq-LG~g~~~~-~~~p~~i~~~~~~~~~ 362 (534)
..+. .....|..++...... ++++...+| .|+.|-...... +-.-.... ................
T Consensus 180 ---------~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
T 4a11_B 180 ---------HILQ--GHRQEILAVSWSPRYDYILATASADS-RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247 (408)
T ss_dssp ---------EEEC--CCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred ---------eeec--CCCCcEEEEEECCCCCcEEEEEcCCC-cEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence 1111 2233577776654433 333333577 899886432211 00000000 0000000011112234
Q ss_pred cEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCC
Q 009463 363 PVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 363 i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n 440 (534)
|..++.. ..+.+....+|.|+.|-......+-.-... ..........+..........++...+|.|+.|-..
T Consensus 248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 322 (408)
T 4a11_B 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK-----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY 322 (408)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc-----ccccccccceeEEecCCCceEEEEecCCEEEEEECc
Confidence 5555543 446777788999999976542221110000 000001111222222334555666788999999743
Q ss_pred CCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCC
Q 009463 441 ESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLG 513 (534)
Q Consensus 441 ~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG 513 (534)
.. ..+..+......|..++... -+.+-+.-..||.|+.|=....-++-
T Consensus 323 ~~----------------------~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 323 SG----------------------EQITMLKGHYKTVDCCVFQS---NFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TC----------------------CEEEEECCCSSCEEEEEEET---TTTEEEEEETTSCEEEEEECC-----
T ss_pred CC----------------------cceeeeccCCCeEEEEEEcC---CCCEEEEECCCCeEEEEeCCCCCccC
Confidence 21 12222322334556655411 22455566789999999876654443
No 49
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=71.01 E-value=76 Score=30.49 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=58.0
Q ss_pred eEEEEEec-CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEE
Q 009463 252 FVVQAAIG-NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 330 (534)
Q Consensus 252 ~I~~Va~G-~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~ 330 (534)
.|..++.. ....+.-..||.|..|-......+ ........-....|..++...+-..+++...|| .|..
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~-~i~i 153 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI-CIKV 153 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCC-eEEE
Confidence 36666653 344555678899999954332111 000010001233577777655555555555577 8888
Q ss_pred eeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCC---cEEEEEecCCcEEEEEC
Q 009463 331 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 331 wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~---~hs~alt~~G~vy~wG~ 387 (534)
|-... .+.+..+......|..++... ...+.-..||.|..|-.
T Consensus 154 wd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 154 WDLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 84321 122333332334555665432 23344567899999954
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=69.85 E-value=79 Score=30.22 Aligned_cols=211 Identities=10% Similarity=-0.014 Sum_probs=98.8
Q ss_pred CcEEEEEeCC---CeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEec----cCCCceEEEEEe---cCceEEEE
Q 009463 197 IRIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVE----SLKNIFVVQAAI---GNFFTAVL 266 (534)
Q Consensus 197 ~~I~~Is~G~---~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~----~l~~~~I~~Va~---G~~hs~~L 266 (534)
..|..++... ...+.-..||.|..|-......... .......... ......|..++. +....+.-
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-----YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-----EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-----EeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3677776643 4455556799999997653222111 0000000000 112345777776 34456667
Q ss_pred EcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecc---eeEEEeeeeCCCCeEEEeeeCCCccccCCC
Q 009463 267 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY---CYLLALACQPSGMAVYSVGCGLGGKLGHGS 343 (534)
Q Consensus 267 t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~---~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~ 343 (534)
..+|.|..|-..... +.... .....+..+.... ...++++...+| .|+.|-....
T Consensus 119 ~~d~~i~iwd~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~~------- 176 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQ------------TADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGP-KVQLCDLKSG------- 176 (408)
T ss_dssp ETTSEEEEEETTTTE------------EEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSS-SEEEEESSSS-------
T ss_pred eCCCeEEEeeCCCCc------------cceec--cCCCceeeeEeecCCCCCcEEEEEcCCC-eEEEEeCCCc-------
Confidence 789999999543211 11111 1122344444433 222333333477 8888853221
Q ss_pred CCCCcCceeeeecccCCCCcEEEEeCC--c-EEEEEecCCcEEEEECCCCCc-cCC---CCCCCccccEEecccCCCcEE
Q 009463 344 RTDEKHPRLIEQFQLLNLQPVVVAAGA--W-HAAVVGQDGRVCTWGWGRYGC-LGH---GNEECESVPKVVQALNDVKAI 416 (534)
Q Consensus 344 ~~~~~~p~~i~~~~~~~~~i~~Ia~G~--~-hs~alt~~G~vy~wG~n~~Gq-LG~---g~~~~~~~P~~v~~l~~~~i~ 416 (534)
..+..+......|..++... . ..+.-..+|.|+.|-...... +-. ........+..........|.
T Consensus 177 -------~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 177 -------SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp -------CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred -------ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 11111222233455555432 2 255667899999997643221 000 000000000000011223466
Q ss_pred EEEecC--ceEEEEEeCCCEEEEeCCC
Q 009463 417 HVATGD--YTTFVVSEDGDVYSFGCGE 441 (534)
Q Consensus 417 ~Va~G~--~~t~alt~~G~vy~wG~n~ 441 (534)
.++... .+.++...+|.|+.|-...
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 666533 3455567899999998553
No 51
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=69.77 E-value=84 Score=30.49 Aligned_cols=154 Identities=10% Similarity=0.013 Sum_probs=78.3
Q ss_pred EEcCCCeEEEE---EcCCcEEEEeCCCCCCcCCCCCcceeeceeeccC--CCCcEEEEEeC---CCeEEEEecCCcEEEE
Q 009463 150 AIAGPGHSIAV---TSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL--QGIRIIQAAAG---AGRTMLISDAGQVYAF 221 (534)
Q Consensus 150 is~G~~h~~~l---~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~--~~~~I~~Is~G---~~h~~~Lt~~G~vy~w 221 (534)
+++......++ ..+|.|+.|-....|++. ..+..+ ....|..++.. ....+.-..||.|..|
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~----------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVD----------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECC----------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCC----------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 44555554443 358999999876544431 111111 12357777664 3455555678999999
Q ss_pred ecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCc---eEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccc
Q 009463 222 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF---FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 298 (534)
Q Consensus 222 G~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~---hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 298 (534)
-....+... ....|...-.-....|..++.... ..+.-..||.|+.|-...... ...+.
T Consensus 110 ~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 171 (402)
T 2aq5_A 110 EIPDGGLVL-------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-----------VLTLG 171 (402)
T ss_dssp ECCTTCCSS-------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-----------EEEEC
T ss_pred EccCCCCcc-------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-----------cEEEe
Confidence 765432211 001111111112345666766433 445557899999995332110 01110
Q ss_pred cccCCcCEEEEEecceeEEEeeeeCCCCeEEEee
Q 009463 299 GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 332 (534)
Q Consensus 299 ~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG 332 (534)
.......|..++...+-..+++...+| .|+.|-
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd 204 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDK-RVRVIE 204 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTS-EEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCC-cEEEEe
Confidence 012234577776654433344433477 888885
No 52
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=69.73 E-value=72 Score=29.73 Aligned_cols=205 Identities=10% Similarity=-0.055 Sum_probs=99.0
Q ss_pred cEEEEEeC--CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEe--cCc-eEEEEEcCCcE
Q 009463 198 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNF-FTAVLSREGRV 272 (534)
Q Consensus 198 ~I~~Is~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~--G~~-hs~~Lt~~G~v 272 (534)
.|..++.. ....+.-..||.|+.|-...... . ..+..+.. ....|..++. ... ..++-..+|.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-------~---~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------N---VDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------E---EEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-------c---ccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 45555543 33455556788888886542210 0 00111111 1233555554 344 56667789999
Q ss_pred EEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCcee
Q 009463 273 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 352 (534)
Q Consensus 273 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~ 352 (534)
+.|-....+++ ..+........|..++... ...+++...+| .|+.|-...... ... ......
T Consensus 82 ~~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~-~i~iwd~~~~~~---~~~--~~~~~~ 143 (342)
T 1yfq_A 82 LKVDLIGSPSF-----------QALTNNEANLGICRICKYG-DDKLIAASWDG-LIEVIDPRNYGD---GVI--AVKNLN 143 (342)
T ss_dssp EEECSSSSSSE-----------EECBSCCCCSCEEEEEEET-TTEEEEEETTS-EEEEECHHHHTT---BCE--EEEESC
T ss_pred EEEEeccCCce-----------EeccccCCCCceEEEEeCC-CCEEEEEcCCC-eEEEEccccccc---ccc--cccCCe
Confidence 98854111111 1111100334566666543 33333333577 999985321000 000 000000
Q ss_pred eeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEec---CceEEEEE
Q 009463 353 IEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG---DYTTFVVS 429 (534)
Q Consensus 353 i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G---~~~t~alt 429 (534)
+..+. ....|..++......++.+.+|.|+.|-....+. .............+..|+.. ....++-.
T Consensus 144 ~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 144 SNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred eeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 11111 2335667777666777778899999997643111 11111222223345555554 34445556
Q ss_pred eCCCEEEEeCCC
Q 009463 430 EDGDVYSFGCGE 441 (534)
Q Consensus 430 ~~G~vy~wG~n~ 441 (534)
.+|.|+.|=...
T Consensus 214 ~dg~i~i~~~~~ 225 (342)
T 1yfq_A 214 IDGRVAVEFFDD 225 (342)
T ss_dssp TTSEEEEEECCT
T ss_pred cCCcEEEEEEcC
Confidence 788899887543
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=68.05 E-value=94 Score=30.40 Aligned_cols=165 Identities=12% Similarity=0.050 Sum_probs=76.4
Q ss_pred cceEEEcCC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCC--CeEEEEecCCcEEE
Q 009463 146 ENSQAIAGP---GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYA 220 (534)
Q Consensus 146 ~i~~is~G~---~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~--~h~~~Lt~~G~vy~ 220 (534)
.|..|+... ...+.-..||.|..|-.... ..+ . ...+..... ....|..|+... ...+.-..||.|..
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~-~~~--~---~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEI-IVG--E---VYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHH-HTT--C---CCSCSEEEE-CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECccc-ccC--c---ccceeeecc-CCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 455555443 23334447888888863220 000 0 000111101 233576666643 44556678899888
Q ss_pred EecC--CCCCcccCCCCeeeeecCeEeccC---CCceEEEEEec----CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCc
Q 009463 221 FGKD--SFGEAEYGVQGTKLVTSPQLVESL---KNIFVVQAAIG----NFFTAVLSREGRVYTFSWGNDARLGHHTEPND 291 (534)
Q Consensus 221 wG~n--~~GqlG~g~~~~~~~~~P~~v~~l---~~~~I~~Va~G----~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~ 291 (534)
|--. ..+++-.. .....-..+... ....+..+..- ....+.-+.+|.|+.|-......
T Consensus 138 wd~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------- 204 (437)
T 3gre_A 138 LKVNHYQQESEVKF----LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER--------- 204 (437)
T ss_dssp EEEEEEEETTEEEE----EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE---------
T ss_pred EEeccccCCceeec----cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee---------
Confidence 8542 12221000 000000111100 23345555522 44556667889999885332110
Q ss_pred ccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeee
Q 009463 292 VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 333 (534)
Q Consensus 292 ~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~ 333 (534)
...+........|..++...+...+++...+| .|..|-.
T Consensus 205 --~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~ 243 (437)
T 3gre_A 205 --LQIIENSPRHGAVSSICIDEECCVLILGTTRG-IIDIWDI 243 (437)
T ss_dssp --EEEEECCGGGCCEEEEEECTTSCEEEEEETTS-CEEEEET
T ss_pred --eEEEccCCCCCceEEEEECCCCCEEEEEcCCC-eEEEEEc
Confidence 11111101234577777765555555544577 8888853
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=67.66 E-value=1.4e+02 Score=32.12 Aligned_cols=233 Identities=12% Similarity=0.021 Sum_probs=111.1
Q ss_pred cceEEEcCC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEE--eCCCeEEEEecCCcEEEE
Q 009463 146 ENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA--AGAGRTMLISDAGQVYAF 221 (534)
Q Consensus 146 ~i~~is~G~--~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is--~G~~h~~~Lt~~G~vy~w 221 (534)
.|..++.-. ...+....+|.|..|-... |+ ....+.. ....|..++ ..+...+....+|.|+.|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-~~----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYET-QV----------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT-TE----------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCC-Cc----------eEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 344444433 3334445688888886432 11 1111211 122344443 344456666788999999
Q ss_pred ecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCc--eEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccccccc
Q 009463 222 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 299 (534)
Q Consensus 222 G~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~--hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 299 (534)
-...... ...+.. ....|..++.... +.+.-+.+|.|..|-......+ ...+.
T Consensus 83 ~~~~~~~-------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~----------~~~~~- 137 (814)
T 3mkq_A 83 NYNTGEK-------------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL----------EQTFE- 137 (814)
T ss_dssp ETTTCCE-------------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE----------EEEEE-
T ss_pred ECCCCcE-------------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE----------EEEEc-
Confidence 6543211 011111 1233555555433 4555677899999864322110 11111
Q ss_pred ccCCcCEEEEEecc-eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEe--CCcEEEEE
Q 009463 300 TLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVV 376 (534)
Q Consensus 300 ~~~~~~i~~Ia~G~-~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~--G~~hs~al 376 (534)
.....|..++... +...+++...+| .|+.|-..... ....+.......+..+..+. .....++-
T Consensus 138 -~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 138 -GHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp -CCSSCEEEEEEETTEEEEEEEEETTS-EEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred -CCCCcEEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 2234577777654 333444444578 99999532110 11111111111222233333 44566666
Q ss_pred ecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecC--ceEEEEEeCCCEEEEeCC
Q 009463 377 GQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD--YTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 377 t~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~--~~t~alt~~G~vy~wG~n 440 (534)
..+|.|+.|-.... .....+.. ....|..++... ...+.-..+|.|+.|-..
T Consensus 205 ~~dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 205 SDDLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp CTTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred eCCCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 78899999964321 11122221 122455555433 334445668999999654
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=66.99 E-value=93 Score=29.95 Aligned_cols=248 Identities=7% Similarity=-0.011 Sum_probs=111.9
Q ss_pred cEEEEEeCCC--eEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec---CceEEEEEcCCcE
Q 009463 198 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREGRV 272 (534)
Q Consensus 198 ~I~~Is~G~~--h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~~Lt~~G~v 272 (534)
.|..++.... ..+.-..||.|..|-...... + ... ...+.. ....|..++.. ....+.-..+|.|
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---~---~~~---~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANN---A---INS---MARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTS---C---CCE---EEECCC-SSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccc---c---ccc---hhhccC-CccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 5666665433 344445789999996543110 0 000 011111 12235555543 4455556678999
Q ss_pred EEEeeCCCCCCCCCCCCCcccccccc-cccCCcCEEEEEecce-eEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCc
Q 009463 273 YTFSWGNDARLGHHTEPNDVEPHPLL-GTLENIPVVQIAAGYC-YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHP 350 (534)
Q Consensus 273 y~wG~n~~gqlG~~~~~~~~~p~~v~-~~~~~~~i~~Ia~G~~-~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p 350 (534)
+.|-......... ...+..+. .......|..++.... ..++++...+| .|+.|-....
T Consensus 139 ~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~-------------- 198 (416)
T 2pm9_A 139 FIWDMNKCTESPS-----NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN-FASIWDLKAK-------------- 198 (416)
T ss_dssp EBCBTTTTSSCTT-----TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS-CEEEEETTTT--------------
T ss_pred EEEECCCCccccc-----cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC-CEEEEECCCC--------------
Confidence 9885433220000 00011110 0012234556655543 23333333477 8888853221
Q ss_pred eeeeecccC------CCCcEEEEeCC---cEEEEEecCC---cEEEEECCCCCccCCCCCCCccccEEecc-cCCCcEEE
Q 009463 351 RLIEQFQLL------NLQPVVVAAGA---WHAAVVGQDG---RVCTWGWGRYGCLGHGNEECESVPKVVQA-LNDVKAIH 417 (534)
Q Consensus 351 ~~i~~~~~~------~~~i~~Ia~G~---~hs~alt~~G---~vy~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~~i~~ 417 (534)
..+..+... ...|..++... ...+.-..+| .|+.|-.....+ |..... .....|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PLQTLNQGHQKGILS 267 (416)
T ss_dssp EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CSBCCCSCCSSCEEE
T ss_pred CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------CcEEeecCccCceeE
Confidence 111111111 23455554432 3445555666 788886543211 111100 11234555
Q ss_pred EEe---cCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEE
Q 009463 418 VAT---GDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFA 494 (534)
Q Consensus 418 Va~---G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~a 494 (534)
++. .....+.-..||.|+.|=.... ..+..+......|..++. +-.+....+.
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~----------------------~~~~~~~~~~~~v~~~~~--s~~~~~~l~s 323 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESA----------------------EQLSQFPARGNWCFKTKF--APEAPDLFAC 323 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSC----------------------CEEEEEECSSSCCCCEEE--CTTCTTEEEE
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCC----------------------ccceeecCCCCceEEEEE--CCCCCCEEEE
Confidence 554 3455555667899999953211 112222222233444443 1112234444
Q ss_pred EEcCCCEEEEeCCCCC
Q 009463 495 LTESGKLYAFGAGDKG 510 (534)
Q Consensus 495 lt~~G~vy~wG~n~~G 510 (534)
-..||.|..|-.....
T Consensus 324 ~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLT 339 (416)
T ss_dssp CCSSSEEEEEESCCCC
T ss_pred EecCCcEEEEEccCCC
Confidence 5678999999876543
No 56
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=66.70 E-value=87 Score=29.51 Aligned_cols=242 Identities=12% Similarity=-0.035 Sum_probs=115.9
Q ss_pred cceEEEcCC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC----CCeEEEEecCCcEE
Q 009463 146 ENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAGQVY 219 (534)
Q Consensus 146 ~i~~is~G~--~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G----~~h~~~Lt~~G~vy 219 (534)
.|..++... ...+.-..||.|+.|=... ........+.. ....|..++.. ....+....||.|.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEG---------ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEET---------TEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCC---------CcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 444454432 2333334688888885431 01111111211 22367777764 45666667889999
Q ss_pred EEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecC----ceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccc
Q 009463 220 AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN----FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 295 (534)
Q Consensus 220 ~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~----~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 295 (534)
.|-.... + ..+..........|..++... ...+....+|.|..|-...... ..+.
T Consensus 83 iwd~~~~-~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~~ 141 (379)
T 3jrp_A 83 IWKEENG-R-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSPI 141 (379)
T ss_dssp EEEEETT-E-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCEE
T ss_pred EEEcCCC-c-----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eeeE
Confidence 9964321 0 001111111233466666653 3566678899999985443211 0111
Q ss_pred ccccccCCcCEEEEEecc-------------eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCC
Q 009463 296 PLLGTLENIPVVQIAAGY-------------CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQ 362 (534)
Q Consensus 296 ~v~~~~~~~~i~~Ia~G~-------------~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~ 362 (534)
.+. .....|..++... +...+++...+| .|+.|-..... .....+..+......
T Consensus 142 ~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~----------~~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 142 IID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDA----------QTYVLESTLEGHSDW 208 (379)
T ss_dssp EEE--CCTTCEEEEEECCCC----------CTTCEEEEEETTS-CEEEEEEETTT----------TEEEEEEEECCCSSC
T ss_pred Eec--CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecCCC----------cceeeEEEEecccCc
Confidence 111 2233466666544 122333333477 88888532211 011122222222334
Q ss_pred cEEEEeC-----CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEeccc--CCCcEEEEEecC--ceEEEEEeCCC
Q 009463 363 PVVVAAG-----AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGD--YTTFVVSEDGD 433 (534)
Q Consensus 363 i~~Ia~G-----~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~i~~Va~G~--~~t~alt~~G~ 433 (534)
|..++.. ....+....+|.|+.|-...... .....+... ....|..++... ...++-..||.
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 5555544 34556667899999996543110 000111111 122455555433 34444567899
Q ss_pred EEEEeCC
Q 009463 434 VYSFGCG 440 (534)
Q Consensus 434 vy~wG~n 440 (534)
|+.|=.+
T Consensus 280 i~iw~~~ 286 (379)
T 3jrp_A 280 VTLWKEN 286 (379)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999754
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=66.01 E-value=99 Score=29.90 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=70.0
Q ss_pred EcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEE---eCCCeEEEEecCCcEEEEecCCCC
Q 009463 151 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA---AGAGRTMLISDAGQVYAFGKDSFG 227 (534)
Q Consensus 151 s~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is---~G~~h~~~Lt~~G~vy~wG~n~~G 227 (534)
+.-..+.+....||.|+.|-....-. ...+....+..+. ......+.-..+|.|..|-... +
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 129 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDG--------------SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-N 129 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEET--------------TTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS-C
T ss_pred eecCCeEEEEEcCCcEEEEEecccce--------------eeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC-c
Confidence 33334455556789999996432110 1111111333332 2344555556788888885431 1
Q ss_pred CcccCCCCeeeeecCeEeccCCCceEEEEEec--CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcC
Q 009463 228 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 305 (534)
Q Consensus 228 qlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 305 (534)
. +..........|..++.. ....+.-..||.|+.|-...... ...+. .....
T Consensus 130 ---------~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------~~~~~--~h~~~ 183 (420)
T 3vl1_A 130 ---------L----QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----------PRTLI--GHRAT 183 (420)
T ss_dssp ---------E----EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------CEEEE--CCSSC
T ss_pred ---------c----eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------ceEEc--CCCCc
Confidence 0 111111123346666664 33455567889999995432111 11111 12334
Q ss_pred EEEEEecceeEEEeeeeCCCCeEEEeee
Q 009463 306 VVQIAAGYCYLLALACQPSGMAVYSVGC 333 (534)
Q Consensus 306 i~~Ia~G~~~~~~lt~~~~G~~vy~wG~ 333 (534)
|..++...+...+++...|| .|..|-.
T Consensus 184 v~~~~~~~~~~~l~s~~~d~-~v~iwd~ 210 (420)
T 3vl1_A 184 VTDIAIIDRGRNVLSASLDG-TIRLWEC 210 (420)
T ss_dssp EEEEEEETTTTEEEEEETTS-CEEEEET
T ss_pred EEEEEEcCCCCEEEEEcCCC-cEEEeEC
Confidence 66666654444444444577 8888853
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=64.87 E-value=91 Score=29.10 Aligned_cols=200 Identities=11% Similarity=-0.040 Sum_probs=94.0
Q ss_pred cceEEEcCC-----CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEE--------eCCCeEEEE
Q 009463 146 ENSQAIAGP-----GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA--------AGAGRTMLI 212 (534)
Q Consensus 146 ~i~~is~G~-----~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is--------~G~~h~~~L 212 (534)
.|..++... ...+.-..||.|..|-.....+ ....+.. ....|..+. ......+.-
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~ 135 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----------PVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTG 135 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----------CSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEE
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----------cEEEEEe-cccceEEEeeccccccCCCccEEEEE
Confidence 445555543 3344455789999996543210 0111111 122455552 233456666
Q ss_pred ecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEE------ecCceEEEEEcCCcEEEEeeCCCCCCCCC
Q 009463 213 SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAA------IGNFFTAVLSREGRVYTFSWGNDARLGHH 286 (534)
Q Consensus 213 t~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va------~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~ 286 (534)
..||.|+.|-....... .....+ ........+..++ ......++-..+|.|+.|-.....
T Consensus 136 ~~d~~i~vwd~~~~~~~-------~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----- 201 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDDP-------VANMEP--VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----- 201 (357)
T ss_dssp ETTSCEEEECTTSCSSC-------SEEECC--CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----
T ss_pred eCCCeEEEEeCCCCCCc-------ceeccc--cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----
Confidence 78899999965432110 000000 0111122455555 234455556778999988533211
Q ss_pred CCCCcccccccccccCCcCEEEEEecc---eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCc
Q 009463 287 TEPNDVEPHPLLGTLENIPVVQIAAGY---CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQP 363 (534)
Q Consensus 287 ~~~~~~~p~~v~~~~~~~~i~~Ia~G~---~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i 363 (534)
..... .....|..++... ....+++...+| .|+.|-......+ . . .....+......|
T Consensus 202 -------~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~------~-~--~~~~~~~~~~~~v 262 (357)
T 3i2n_A 202 -------LRWET--NIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFDMRTQHPT------K-G--FASVSEKAHKSTV 262 (357)
T ss_dssp -------EEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEEEEEEETT------T-E--EEEEEEECCSSCE
T ss_pred -------eeeec--CCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEeCcCCCcc------c-c--eeeeccCCCcCCE
Confidence 11111 2233577776654 233333333477 8988864321100 0 0 0000111223345
Q ss_pred EEEEeCCc---EEEEEecCCcEEEEECCC
Q 009463 364 VVVAAGAW---HAAVVGQDGRVCTWGWGR 389 (534)
Q Consensus 364 ~~Ia~G~~---hs~alt~~G~vy~wG~n~ 389 (534)
..++.... ..+.-..+|.|+.|-...
T Consensus 263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 263 WQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 55555433 445557889999997543
No 59
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=64.78 E-value=1.1e+02 Score=29.97 Aligned_cols=144 Identities=7% Similarity=-0.075 Sum_probs=72.6
Q ss_pred CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccc
Q 009463 260 NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKL 339 (534)
Q Consensus 260 ~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqL 339 (534)
....+++.-++.||.|-... |++ ...+...-....|..|+...+..++++-..|| .|..|-....
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g~~----------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg-~v~iWd~~~~--- 179 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-GDI----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-EVQLWDVQQQ--- 179 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-CCE----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTS-CEEEEETTTT---
T ss_pred CCCEEEEEeCCEEEEEECCC-CCE----------EEEEEecCCCCcEEEEEECCCCCEEEEEECCC-eEEEEEcCCC---
Confidence 34566777789999994322 110 01111112233577777665544444544578 8888853221
Q ss_pred cCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEE
Q 009463 340 GHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA 419 (534)
Q Consensus 340 G~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va 419 (534)
+.+..+......+..++......+.-..++.++.|-...... ....+.. ....+..+.
T Consensus 180 -----------~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~----------~~~~~~~-h~~~~~~~~ 237 (420)
T 4gga_A 180 -----------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----------HVATLSG-HSQEVCGLR 237 (420)
T ss_dssp -----------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CSSCEEEEE
T ss_pred -----------cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce----------eeEEecc-cccceeeee
Confidence 122222223345556666555556667788888885432111 0011111 111222222
Q ss_pred e--cCceEEEEEeCCCEEEEeCC
Q 009463 420 T--GDYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 420 ~--G~~~t~alt~~G~vy~wG~n 440 (534)
. .....+....||.++.|-..
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESS
T ss_pred ecCCCCeeeeeeccccceEEeec
Confidence 2 33445556678899998743
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=64.26 E-value=1.3e+02 Score=30.71 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecC
Q 009463 154 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 154 ~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n 224 (534)
....+....+|.|+.|-... ..+...-......|..++. .. .+....||.|..|-..
T Consensus 309 ~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 309 NGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred CCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 34455556677777775332 1111111112346888888 66 6667788999988643
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=64.18 E-value=1e+02 Score=29.49 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=36.0
Q ss_pred CcEEEEeCC-cEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEec--CceEEEEEeCCCEEEEe
Q 009463 362 QPVVVAAGA-WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFG 438 (534)
Q Consensus 362 ~i~~Ia~G~-~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G--~~~t~alt~~G~vy~wG 438 (534)
.|..++... ...++...+|.|+.|-.... .+..........|..++.. ....++-..+|.|+.|-
T Consensus 291 ~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 291 SIVSASWVGDDKVISCSMDGSVRLWSLKQN------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEETTTT------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEECCCCEEEEEeCCCcEEEEECCCC------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 444444332 26666678899999965321 1111111122345555543 33445556788999997
Q ss_pred CC
Q 009463 439 CG 440 (534)
Q Consensus 439 ~n 440 (534)
..
T Consensus 359 ~~ 360 (425)
T 1r5m_A 359 LK 360 (425)
T ss_dssp CH
T ss_pred CC
Confidence 43
No 62
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=63.49 E-value=99 Score=29.02 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=117.5
Q ss_pred CCcEEEEEeC--CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec---CceEEEEEcCC
Q 009463 196 GIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREG 270 (534)
Q Consensus 196 ~~~I~~Is~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~~Lt~~G 270 (534)
+..+..+... .++.+++|++|++|..--.+. ..+ ... . + .-.+.+|+.+.+- ....+++|++|
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~l---p~~---~~~-~----l-l~~~e~i~~v~~~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQA---LQG---SKV-S----L-KSREEKIVGAFIREKFGNRLLLATKKG 90 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHH---HTS---EEC-C----C-SSTTCCEEEEEEGGGSCSEEEEEETTS
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhC---ccC---ccc-c----c-CCCCCEEEEEECCcCCCCEEEEEeCCC
Confidence 3345555433 446889999999998643221 100 000 0 3 2346778888762 24678899999
Q ss_pred cEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEe--cceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCc
Q 009463 271 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEK 348 (534)
Q Consensus 271 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~--G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~ 348 (534)
.+.-.-..++.+-. .-...+.. -++..++.+.. +..+.+++|. +| .+|.+-....-.+|....-.
T Consensus 91 ~iKr~~l~~~~~~~-------~G~~~i~l-kegD~l~~~~~~~~~~~ill~T~--~G-~~~r~~~~eip~~gR~a~Gv-- 157 (276)
T 3no0_A 91 YVKKIPLAEFEYKA-------QGMPIIKL-TEGDEVVSIASSVDETHILLFTK--KG-RVARFSVREVPPSTPGARGV-- 157 (276)
T ss_dssp EEEEEEGGGTTTCS-------TTEECSCC-CTTCCEEEEEECCSSCEEEEEET--TS-EEEEEEGGGSCBCCTTCCCE--
T ss_pred EEEEEEHHHhhhhc-------CCeEEEec-CCCCEEEEEEEeCCCCEEEEEEC--CC-EEEEEEhhhCCCcCCCCCCE--
Confidence 98876544432100 00111111 22334544433 4456777775 88 99988654443333322111
Q ss_pred CceeeeecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEE--ecCce
Q 009463 349 HPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA--TGDYT 424 (534)
Q Consensus 349 ~p~~i~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va--~G~~~ 424 (534)
+ .+ .+. .+.+|+.+... ..+.+++|++|.+.-.-..++-..+.+....... ..+.+++.+. .+...
T Consensus 158 -~-~i-~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~ 227 (276)
T 3no0_A 158 -Q-GI-KLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVE 227 (276)
T ss_dssp -E-CC-CCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEE
T ss_pred -E-EE-ccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCE
Confidence 1 11 122 23456655433 4578888999998887766554443332111111 1223344432 35677
Q ss_pred EEEEEeCCCEEE--EeCCCCCCCCCC
Q 009463 425 TFVVSEDGDVYS--FGCGESASLGHN 448 (534)
Q Consensus 425 t~alt~~G~vy~--wG~n~~gqLG~~ 448 (534)
.+++|++|.+.. +-..+.-.+|..
T Consensus 228 i~~~t~~G~~ir~~~~~~~i~~~~R~ 253 (276)
T 3no0_A 228 LLITTKNGKAFYDKINQKDIPLSTKK 253 (276)
T ss_dssp EEEEETTSCEEEEEEEGGGSCBCCTT
T ss_pred EEEEcCCCeEEEeeeCHHHCCCcCCC
Confidence 888999999998 876655555543
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=62.90 E-value=99 Score=28.84 Aligned_cols=259 Identities=8% Similarity=-0.070 Sum_probs=116.1
Q ss_pred cEEEEEeCC-----CeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEe--------cCceEE
Q 009463 198 RIIQAAAGA-----GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--------GNFFTA 264 (534)
Q Consensus 198 ~I~~Is~G~-----~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~--------G~~hs~ 264 (534)
.|..++... ...+.-..+|.|..|-.....+. ...+. -....|..+.. .....+
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP------------VYSVK-GHKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC------------SEEEC-CCSSCEEEEEEESGGGCC-CCCEEE
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc------------EEEEE-ecccceEEEeeccccccCCCccEEE
Confidence 577777654 34555667899999965432200 01111 11223555532 233555
Q ss_pred EEEcCCcEEEEeeCCCCCCCCCCCCCccccccccc--ccCCcCEEEEEe----cceeEEEeeeeCCCCeEEEeeeCCCcc
Q 009463 265 VLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG--TLENIPVVQIAA----GYCYLLALACQPSGMAVYSVGCGLGGK 338 (534)
Q Consensus 265 ~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~--~~~~~~i~~Ia~----G~~~~~~lt~~~~G~~vy~wG~n~~gq 338 (534)
.-..+|.|+.|-....... ...+.. ......+..++. ..+..++++...+| .|+.|-.....
T Consensus 134 ~~~~d~~i~vwd~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~- 201 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKDDP----------VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG-DIKLFDLRNMA- 201 (357)
T ss_dssp EEETTSCEEEECTTSCSSC----------SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS-EEEEEETTTTE-
T ss_pred EEeCCCeEEEEeCCCCCCc----------ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC-eEEEEECccCc-
Confidence 5678899999843322100 000100 011224666652 11222233333467 88888532211
Q ss_pred ccCCCCCCCcCceeeeecccCCCCcEEEEeC-----CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCC
Q 009463 339 LGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-----AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDV 413 (534)
Q Consensus 339 LG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G-----~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 413 (534)
+.... .....|..++.. ....++-..+|.|+.|-......+ ......... ....
T Consensus 202 -----------~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~-~~~~ 260 (357)
T 3i2n_A 202 -----------LRWET---NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSEK-AHKS 260 (357)
T ss_dssp -----------EEEEE---ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEEE-CCSS
T ss_pred -----------eeeec---CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeeccC-CCcC
Confidence 11111 122345555543 355666678899999964321100 000000111 1233
Q ss_pred cEEEEEecCc---eEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeecccccc
Q 009463 414 KAIHVATGDY---TTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNA 490 (534)
Q Consensus 414 ~i~~Va~G~~---~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ 490 (534)
.|..++.... ..+.-..||.|+.|=.......-... ..............+..+......|..++. +-.|..
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~ 335 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD---SEGIEMGVAGSVSLLQNVTLSTQPISSLDW--SPDKRG 335 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC---TTSCCCCCCCEEEEEEEEECCSSCEEEEEE--CSSSTT
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc---CCCCccccccccceeeccccCCCCeeEEEE--cCCCCe
Confidence 5666665443 33444678999999754322110000 000000000111334444334456666655 112322
Q ss_pred EEEEEEcCCCEEEEeCC
Q 009463 491 HTFALTESGKLYAFGAG 507 (534)
Q Consensus 491 ht~alt~~G~vy~wG~n 507 (534)
-.+.-..||.|+.|-..
T Consensus 336 l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEETTSEEEEEEEC
T ss_pred EEEEecCCCcEEEEECC
Confidence 22245678888888653
No 64
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=62.62 E-value=92 Score=28.37 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=10.8
Q ss_pred EEEEEecCCcEEEEEC
Q 009463 372 HAAVVGQDGRVCTWGW 387 (534)
Q Consensus 372 hs~alt~~G~vy~wG~ 387 (534)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4567777777777654
No 65
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=61.46 E-value=91 Score=27.95 Aligned_cols=229 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred eEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCC
Q 009463 208 RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHT 287 (534)
Q Consensus 208 h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~ 287 (534)
+.++++.+|++|..+....+.+-.-+................. +.++++.+|++|+... .+.+-.-+
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p-----------~~i~~~~~g~l~v~~~--~~~i~~~d 93 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQP-----------QGLAVDGAGTVYVTDF--NNRVVTLA 93 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSC-----------CCEEECTTCCEEEEET--TTEEEEEC
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCc-----------ceeEECCCCCEEEEcC--CCEEEEEe
Q ss_pred CCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEE
Q 009463 288 EPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVA 367 (534)
Q Consensus 288 ~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia 367 (534)
.............+.. +..|+...+..+.++...++ .|+.| .......-.........|.-+
T Consensus 94 ~~~~~~~~~~~~~~~~--p~~i~~~~~g~l~v~~~~~~-~i~~~-~~~~~~~~~~~~~~~~~p~~i-------------- 155 (270)
T 1rwi_B 94 AGSNNQTVLPFDGLNY--PEGLAVDTQGAVYVADRGNN-RVVKL-AAGSKTQTVLPFTGLNDPDGV-------------- 155 (270)
T ss_dssp TTCSCCEECCCCSCSS--EEEEEECTTCCEEEEEGGGT-EEEEE-CTTCCSCEECCCCSCCSCCCE--------------
T ss_pred CCCceEeeeecCCcCC--CcceEECCCCCEEEEECCCC-EEEEE-ECCCceeEeeccccCCCceeE--------------
Q ss_pred eCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCC
Q 009463 368 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGH 447 (534)
Q Consensus 368 ~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~ 447 (534)
+++.+|++|.-......-.-...............+ ..-..++++.+|.+|+-........-.
T Consensus 156 -------~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 156 -------AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI----------TAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp -------EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC----------CSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred -------EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCC----------CCceEEEECCCCCEEEEECCCCcEEEE
Q ss_pred CCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCC
Q 009463 448 NAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDK 509 (534)
Q Consensus 448 ~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~ 509 (534)
.. ............+ ..-..++++.+|++|.-.....
T Consensus 219 ~~--------~~~~~~~~~~~~~-----------------~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 219 LA--------GSTTSTVLPFTGL-----------------NTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp CT--------TCSCCEECCCCSC-----------------SCEEEEEECTTCCEEEEEGGGT
T ss_pred cC--------CCCcceeeccCCC-----------------CCceeEEECCCCCEEEEECCCC
No 66
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=60.13 E-value=1.1e+02 Score=28.52 Aligned_cols=149 Identities=8% Similarity=0.066 Sum_probs=69.2
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC--CCeEEEEecC-----CcEEEEecCCCC
Q 009463 155 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDA-----GQVYAFGKDSFG 227 (534)
Q Consensus 155 ~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G--~~h~~~Lt~~-----G~vy~wG~n~~G 227 (534)
.+.+....||.|+.|-....-. ...+. ....|..++.. ....++...+ |.|+.|-.....
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred CEEEEEeCCCeEEEEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 3455556889999996432110 11111 12245555443 3344444555 788888654322
Q ss_pred CcccCCCCeeeeecC-eEeccC-CCceEEEEEec--CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCC
Q 009463 228 EAEYGVQGTKLVTSP-QLVESL-KNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLEN 303 (534)
Q Consensus 228 qlG~g~~~~~~~~~P-~~v~~l-~~~~I~~Va~G--~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 303 (534)
....- ......+ ..+... ....+..++.. ....++-+.+|.|+.|-....+ .+.... ....
T Consensus 154 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~-~~~~ 218 (369)
T 3zwl_B 154 ATHEL---TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSI-DLHE 218 (369)
T ss_dssp TTCCE---EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEE-ECCS
T ss_pred cceee---cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEE-ecCC
Confidence 21100 0000001 111111 11135555443 3455566788999988533211 111111 1223
Q ss_pred cCEEEEEecceeEEEeeeeCCCCeEEEee
Q 009463 304 IPVVQIAAGYCYLLALACQPSGMAVYSVG 332 (534)
Q Consensus 304 ~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG 332 (534)
..|..++...+...+++...+| .|+.|-
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~-~i~v~d 246 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDT-NSFLVD 246 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-EEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCc-eEEEEE
Confidence 4577777655544444444577 888885
No 67
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=59.02 E-value=1.2e+02 Score=28.51 Aligned_cols=209 Identities=11% Similarity=-0.065 Sum_probs=96.6
Q ss_pred cEEEEEeC--CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec--CceEEEEEcCCcEE
Q 009463 198 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVY 273 (534)
Q Consensus 198 ~I~~Is~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~~Lt~~G~vy 273 (534)
.|..++.. ....+....||.|+.|-.... + ..+.....-....|..++.. ....++-..+|.|+
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-T-----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 121 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETT-E-----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCC-e-----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE
Confidence 46555543 344555567888888854211 0 00111101113346666653 33455567789999
Q ss_pred EEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCC----CCCcC
Q 009463 274 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSR----TDEKH 349 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~----~~~~~ 349 (534)
.|-....... .....+.. .....|..++...+...+++...+| .|+.|-......-..... .....
T Consensus 122 i~d~~~~~~~--------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 122 ICYFEQENDW--------WVCKHIKK-PIRSTVLSLDWHPNSVLLAAGSCDF-KCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp EEEEETTTTE--------EEEEEECT-TCCSCEEEEEECTTSSEEEEEETTS-CEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred EEEecCCCcc--------eeeeeeec-ccCCCeeEEEEcCCCCEEEEEcCCC-CEEEEEcccccccccccccccccccch
Confidence 8855432110 00011111 1234577777654444444444577 888886321110000000 00011
Q ss_pred ceeeeecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEec-CceEE
Q 009463 350 PRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG-DYTTF 426 (534)
Q Consensus 350 p~~i~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G-~~~t~ 426 (534)
...+..+......|..++.. ..+.+....+|.|+.|-...... ...+. .....|..++.. +...+
T Consensus 192 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l 259 (372)
T 1k8k_C 192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----------VATLA-SETLPLLAVTFITESSLV 259 (372)
T ss_dssp TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----------EEEEE-CSSCCEEEEEEEETTEEE
T ss_pred hhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------eEEEc-cCCCCeEEEEEecCCCEE
Confidence 12232332233345555543 44666667888888886532110 11111 112234444432 33455
Q ss_pred EEEeCCCEEEEeCC
Q 009463 427 VVSEDGDVYSFGCG 440 (534)
Q Consensus 427 alt~~G~vy~wG~n 440 (534)
+...+|.|+.|-..
T Consensus 260 ~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 260 AAGHDCFPVLFTYD 273 (372)
T ss_dssp EEETTSSCEEEEEE
T ss_pred EEEeCCeEEEEEcc
Confidence 55678888888754
No 68
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=58.86 E-value=1.6e+02 Score=29.91 Aligned_cols=183 Identities=17% Similarity=0.110 Sum_probs=87.3
Q ss_pred cEEEEEeC--CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec--CceEEEEEcCCcEE
Q 009463 198 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVY 273 (534)
Q Consensus 198 ~I~~Is~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~~Lt~~G~vy 273 (534)
.|..++.. +.+.+.-..+|.|..|-.+ +++ . ..+.. ....|..++.. ....+.-..+|.|+
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~---------~---~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQL---------L---QTLTG-HSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT--CCE---------E---EEEEC-CSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCE---------E---EEecC-CCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 45555443 3345555677777777532 111 0 01111 12346666553 23445556788888
Q ss_pred EEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceee
Q 009463 274 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 353 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i 353 (534)
.|-. .+++ ...+. .....|..++...+...+++...|+ .|+.|-. .++ .+
T Consensus 411 ~~~~--~~~~----------~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~-~v~~w~~--~~~-------------~~ 460 (577)
T 2ymu_A 411 LWNR--NGQL----------LQTLT--GHSSSVWGVAFSPDDQTIASASDDK-TVKLWNR--NGQ-------------LL 460 (577)
T ss_dssp EECT--TCCE----------EEEEE--CCSSCEEEEEECTTSSEEEEEETTS-EEEEEET--TSC-------------EE
T ss_pred EEeC--CCCE----------EEEec--CCCCCeEEEEECCCCCEEEEEcCCC-EEEEEEC--CCC-------------EE
Confidence 8831 1111 01111 2233466666654444444444577 8888842 111 12
Q ss_pred eecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecC--ceEEEEE
Q 009463 354 EQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD--YTTFVVS 429 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~--~~t~alt 429 (534)
..+......|..++.. ....+.-..||.|+.|-.+ |++ ...+.. ....|..|+... ..-+.-.
T Consensus 461 ~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~~~-h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEEEC-CSSCEEEEEECTTSSCEEEEE
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEEeC-CCCCEEEEEEcCCCCEEEEEE
Confidence 2222223345555443 3344444678889999632 211 111111 123466665432 3334456
Q ss_pred eCCCEEEEe
Q 009463 430 EDGDVYSFG 438 (534)
Q Consensus 430 ~~G~vy~wG 438 (534)
.||.|+.|=
T Consensus 528 ~dg~v~lwd 536 (577)
T 2ymu_A 528 DDKTVKLWN 536 (577)
T ss_dssp TTSEEEEEC
T ss_pred CcCEEEEEe
Confidence 788899983
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=58.27 E-value=1.2e+02 Score=28.41 Aligned_cols=198 Identities=16% Similarity=0.059 Sum_probs=96.0
Q ss_pred cEEEEEeCCC--eEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec----CceEEEEEcCCc
Q 009463 198 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG----NFFTAVLSREGR 271 (534)
Q Consensus 198 ~I~~Is~G~~--h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G----~~hs~~Lt~~G~ 271 (534)
.|..++...+ ..+.-..||.|+.|-.... . ......+.. ....|..++.. ....+.-..||.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---------~--~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------T--HKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT---------E--EEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC---------c--ceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4666655433 3334446888888854310 0 000111111 23357777764 455666778999
Q ss_pred EEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecce--eEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcC
Q 009463 272 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC--YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 349 (534)
Q Consensus 272 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~--~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~ 349 (534)
|..|-..... ..+... .......|..++.... ...+++...+| .|..|=...... ..
T Consensus 81 v~iwd~~~~~----------~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~---------~~ 139 (379)
T 3jrp_A 81 VLIWKEENGR----------WSQIAV-HAVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGT---------TS 139 (379)
T ss_dssp EEEEEEETTE----------EEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECCTTSC---------CC
T ss_pred EEEEEcCCCc----------eeEeee-ecCCCcceEEEEeCCCCCCCEEEEecCCC-cEEEEecCCCCc---------ee
Confidence 9999543310 001111 1122345777766554 33333333477 888885432211 11
Q ss_pred ceeeeecccCCCCcEEEEeC---------------CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccE-EecccCCC
Q 009463 350 PRLIEQFQLLNLQPVVVAAG---------------AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPK-VVQALNDV 413 (534)
Q Consensus 350 p~~i~~~~~~~~~i~~Ia~G---------------~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~-~v~~l~~~ 413 (534)
+..+ ......|..++.. ....++-..+|.|+.|-..... ....+. .+. ....
T Consensus 140 ~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~-~h~~ 207 (379)
T 3jrp_A 140 PIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLE-GHSD 207 (379)
T ss_dssp EEEE---ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEEC-CCSS
T ss_pred eEEe---cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEe-cccC
Confidence 1111 1122234444432 4556666789999999542211 001111 111 1123
Q ss_pred cEEEEEecC-----ceEEEEEeCCCEEEEeCC
Q 009463 414 KAIHVATGD-----YTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 414 ~i~~Va~G~-----~~t~alt~~G~vy~wG~n 440 (534)
.|..++... ...+....||.|+.|-..
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 466666543 344445678999999744
No 70
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=57.63 E-value=1.2e+02 Score=28.45 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=12.4
Q ss_pred CcEEEEEecCCcEEEEEC
Q 009463 370 AWHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 370 ~~hs~alt~~G~vy~wG~ 387 (534)
..|+++. -++++|++|-
T Consensus 140 ~~~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGG 156 (315)
T ss_dssp BSCEEEE-ETTEEEEECC
T ss_pred cceeEEE-ECCEEEEEeC
Confidence 4566665 5779999984
No 71
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.98 E-value=1.5e+02 Score=28.62 Aligned_cols=219 Identities=13% Similarity=0.059 Sum_probs=110.1
Q ss_pred EEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccc--ccccccCCcCEEEEEecc-----eeEEEeeeeCCCCeE
Q 009463 256 AAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH--PLLGTLENIPVVQIAAGY-----CYLLALACQPSGMAV 328 (534)
Q Consensus 256 Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~--~v~~~~~~~~i~~Ia~G~-----~~~~~lt~~~~G~~v 328 (534)
.+....+.+++|+.|++|..--..--..+. ...-.|. .+. ..++.+|+.+.+.. ...+++|. +| .+
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~--~G-~i 121 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASR---TARGQHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATR--NG-LV 121 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCS---SSCCEEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEET--TS-EE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---cCCCEEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcC--CC-EE
Confidence 445667788899999999764322211111 1111221 121 13466788876654 34566665 77 66
Q ss_pred EEeeeCCCccccCCCCCCCcCceeeeecccCCCCcE--EEEeCCcEEEEEecCCcEEEEECC--CCCccCCCCCCCcccc
Q 009463 329 YSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPV--VVAAGAWHAAVVGQDGRVCTWGWG--RYGCLGHGNEECESVP 404 (534)
Q Consensus 329 y~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~--~Ia~G~~hs~alt~~G~vy~wG~n--~~GqLG~g~~~~~~~P 404 (534)
.-.--..+-... ......-.+.. +..++ .+..+..+.+++|++|++|.+-.. +--.+|......
T Consensus 122 Kr~~l~~~~~~~-------r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv---- 189 (327)
T 3uc1_A 122 KKSKLTDFDSNR-------SGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV---- 189 (327)
T ss_dssp EEEEGGGGCCCC-------SSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----
T ss_pred EEeEHHHhhccc-------cCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----
Confidence 654322211000 00111111111 22333 344567789999999999999876 433333332111
Q ss_pred EEecccCCCcEEEEEecC--ceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEe
Q 009463 405 KVVQALNDVKAIHVATGD--YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISL 482 (534)
Q Consensus 405 ~~v~~l~~~~i~~Va~G~--~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~ 482 (534)
..+....+.+|+.+..-. .+.+++|++|.+.-.=-.++-..+.+. .-...-.+...+..++.+..
T Consensus 190 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~-------------~G~~~~~l~~~~d~lv~~~~ 256 (327)
T 3uc1_A 190 QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG-------------KGVLTVMYDRRRGRLVGALI 256 (327)
T ss_dssp ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS-------------CCEESSCCCTTTCSEEEEEE
T ss_pred eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC-------------CcEEEEEecCCCCeEEEEEE
Confidence 113333456777776643 457778888866555433332222211 00010011111223444433
Q ss_pred eeccccccEEEEEEcCCCEEEEeCCCC
Q 009463 483 TNSIYWNAHTFALTESGKLYAFGAGDK 509 (534)
Q Consensus 483 ~~~~~G~~ht~alt~~G~vy~wG~n~~ 509 (534)
. .+....+++|++|++.-+-..+-
T Consensus 257 ~---~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 257 V---DDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp E---CTTCEEEEEEGGGCEEEEEGGGS
T ss_pred e---CCCccEEEEcCCCeEEEEehhhc
Confidence 1 15578889999999988844433
No 72
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=54.78 E-value=1.3e+02 Score=27.74 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=15.1
Q ss_pred EEEEEecCCcEEEEECCCCCccCC
Q 009463 372 HAAVVGQDGRVCTWGWGRYGCLGH 395 (534)
Q Consensus 372 hs~alt~~G~vy~wG~n~~GqLG~ 395 (534)
+.+.++.+|++ .|-.+.....|.
T Consensus 245 ~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 245 QLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp SEEEECTTSBE-EEEECCTTTSCC
T ss_pred eEEEECCCCCE-EEEecCcccccc
Confidence 57888888885 565555555543
No 73
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=53.66 E-value=2.5 Score=28.90 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=26.0
Q ss_pred ccccCCc-eeEeehhcCCCCchhhhhhHHhhhhccC
Q 009463 49 PLAASPS-IVLHVLTACNLDPQDLAKLEATCSFFRQ 83 (534)
Q Consensus 49 ~~~~~~~-~~~~~~~~~~l~~~d~~~l~~t~~~f~~ 83 (534)
.+..-|. ++++|++. |+++|+..+..+|+.|+.
T Consensus 8 ~~~~LP~eil~~I~~~--L~~~dl~~~~~Vck~w~~ 41 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSC--LCLPELLKVSGVCKRWYR 41 (53)
T ss_dssp -CCSSCHHHHHHHHTT--SCGGGHHHHHTTCHHHHH
T ss_pred CHHHCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHH
Confidence 4556665 88888875 789999999999998883
No 74
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=53.36 E-value=1.6e+02 Score=28.32 Aligned_cols=223 Identities=14% Similarity=0.032 Sum_probs=114.2
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCC-----CeEEEEecCCcEEEEecC
Q 009463 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA-----GRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 150 is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~-----~h~~~Lt~~G~vy~wG~n 224 (534)
.+....+.+++|+.|++|..-...--..+... .-......++..++.+|+.+.... ...+++|++|.+.-.--.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~ 127 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTA-RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT 127 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSS-CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC-CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH
Confidence 34566778899999999988643221111000 001111223333577898887654 468899999988877654
Q ss_pred CCCCcccCCCCeeeeecCe-EeccCCCceEEE--EEecCceEEEEEcCCcEEEEeeC--CCCCCCCCCCCCccccccccc
Q 009463 225 SFGEAEYGVQGTKLVTSPQ-LVESLKNIFVVQ--AAIGNFFTAVLSREGRVYTFSWG--NDARLGHHTEPNDVEPHPLLG 299 (534)
Q Consensus 225 ~~GqlG~g~~~~~~~~~P~-~v~~l~~~~I~~--Va~G~~hs~~Lt~~G~vy~wG~n--~~gqlG~~~~~~~~~p~~v~~ 299 (534)
.+-.... .-. .+..-.+..++. ++.+..+.+++|++|++|.+--. .--..|...... +...
T Consensus 128 ~~~~~~r---------~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv-----~~i~ 193 (327)
T 3uc1_A 128 DFDSNRS---------GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV-----QGMR 193 (327)
T ss_dssp GGCCCCS---------SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE-----ESSC
T ss_pred Hhhcccc---------CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe-----eeec
Confidence 4321100 000 111112333443 34467789999999999988665 322233221111 1111
Q ss_pred ccCCcCEEEEEecc--eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEE--EEeCCcEEEE
Q 009463 300 TLENIPVVQIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV--VAAGAWHAAV 375 (534)
Q Consensus 300 ~~~~~~i~~Ia~G~--~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~--Ia~G~~hs~a 375 (534)
..++..|+.+..-. .+.+++|+ +| .+.-.--..+-..+.+.. -...-.+...+..++. +..+....++
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~--~G-~~Krt~l~e~~~~~R~~~-----G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATS--GG-YAKRTAIEEYPVQGRGGK-----GVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEET--TS-EEEEEEGGGSCBCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCCCCEEEEEEEECCCCEEEEEeC--CC-cEEEEEHHHccccCcCCC-----cEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 13455677766543 34555564 66 554432222211111110 0011111111223433 3346778999
Q ss_pred EecCCcEEEEECCCCCccCC
Q 009463 376 VGQDGRVCTWGWGRYGCLGH 395 (534)
Q Consensus 376 lt~~G~vy~wG~n~~GqLG~ 395 (534)
+|++|++..+-..+--..|.
T Consensus 266 ~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 266 VTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp EEGGGCEEEEEGGGSCBCCT
T ss_pred EcCCCeEEEEehhhccccCC
Confidence 99999999886655444443
No 75
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=53.11 E-value=1.6e+02 Score=28.13 Aligned_cols=193 Identities=11% Similarity=0.002 Sum_probs=90.0
Q ss_pred cEEEEEeC-CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec--CceEEEEEcCCcEEE
Q 009463 198 RIIQAAAG-AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYT 274 (534)
Q Consensus 198 ~I~~Is~G-~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~~Lt~~G~vy~ 274 (534)
.|..++.. ....+.-..||.|..|-......+ ........-....|..|+.. ..+.+.-..||.|..
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~----------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETL----------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSC----------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCce----------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 46666643 344555678899999965332111 00110000112346666653 334455567889998
Q ss_pred EeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEeccee-EEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceee
Q 009463 275 FSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 353 (534)
Q Consensus 275 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~-~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i 353 (534)
|-..... +.... .-....|..++..... .++++...|| .|..|=.... + +...
T Consensus 154 wd~~~~~------------~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~-~v~iwd~~~~-~-----------~~~~ 207 (344)
T 4gqb_B 154 WDLAQQV------------VLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDN-RILLWDTRCP-K-----------PASQ 207 (344)
T ss_dssp EETTTTE------------EEEEE-CCCSSCEEEEEECSSCTTEEEEEETTS-CEEEEETTSS-S-----------CEEE
T ss_pred EECCCCc------------EEEEE-cCcCCceEEEEecCCCCCceeeecccc-cccccccccc-c-----------eeee
Confidence 8432210 11100 0123457777665432 3444444578 8888842111 0 1100
Q ss_pred eecccCCCCcEEEEeC---CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecC---ceEEE
Q 009463 354 EQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD---YTTFV 427 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G---~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~---~~t~a 427 (534)
.........+..++.. ....+.-..||.|..|-... ++ ....+.. ....|..|+... ...+.
T Consensus 208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~----------~~~~~~~-h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TS----------CVLSSAV-HSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------------CCEEEEC-CSSCEEEEEECSSSSCCEEE
T ss_pred eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-Cc----------EEEEEcC-CCCCEEEEEEccCCCeEEEE
Confidence 0001112234444432 22333446789999995432 11 0111221 123566666532 33334
Q ss_pred EEeCCCEEEEe
Q 009463 428 VSEDGDVYSFG 438 (534)
Q Consensus 428 lt~~G~vy~wG 438 (534)
-..||.|+.|-
T Consensus 276 gs~D~~i~vwd 286 (344)
T 4gqb_B 276 LSEDCSLAVLD 286 (344)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCeEEEEE
Confidence 56789999994
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=51.82 E-value=2.1e+02 Score=29.12 Aligned_cols=111 Identities=8% Similarity=-0.052 Sum_probs=56.0
Q ss_pred cCEEEEEecceeE-EEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCC---CcEEEEeC---CcEEEEE
Q 009463 304 IPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNL---QPVVVAAG---AWHAAVV 376 (534)
Q Consensus 304 ~~i~~Ia~G~~~~-~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~---~i~~Ia~G---~~hs~al 376 (534)
..|..++...... ++++...+| .|+.|-... ...+..+..... .|..++.. ....+..
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~-~v~vwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDG-SVVFYQGPP--------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTT-EEEEEETTT--------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred ccEEEEEECCCCCcEEEEEeCCC-cEEEEeCCC--------------cceeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence 3466666655542 333434577 899884211 111222221222 45555544 3455666
Q ss_pred ecCCcEEEEECCCCCccCCCCCCCccccEEecc---cCCCcEEEEEe-cCceEEEEEeCCCEEEEeCC
Q 009463 377 GQDGRVCTWGWGRYGCLGHGNEECESVPKVVQA---LNDVKAIHVAT-GDYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 377 t~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~---l~~~~i~~Va~-G~~~t~alt~~G~vy~wG~n 440 (534)
..+|.|+.|-...... ...+.. .....|..++. .....+....+|.|..|-..
T Consensus 226 ~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEF-----------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp ETTCCEEEEETTTCCE-----------EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred eCCCeEEEEECCCCCE-----------eEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECC
Confidence 7899999997532111 111101 12234555554 33444455668889999643
No 77
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=51.81 E-value=1.2e+02 Score=29.99 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=46.6
Q ss_pred eceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEE
Q 009463 187 RPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 266 (534)
Q Consensus 187 ~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~L 266 (534)
.|.....+++ |.+|+. ....+++..+|.|..|--....+. .. +..+ ...+.++.+-....+++
T Consensus 80 ~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~------~~-------~~~~-~~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 80 TFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEELSEF------RT-------VTSF-EKPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSSTTCE------EE-------EEEC-SSCEEEEEECSSEEEEE
T ss_pred cceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc------Cc-------ccee-ecceeeEEecCCCEEEE
Confidence 3433333454 899999 777888889999999975543321 00 0111 12255665655557888
Q ss_pred EcCCcEEEEee
Q 009463 267 SREGRVYTFSW 277 (534)
Q Consensus 267 t~~G~vy~wG~ 277 (534)
+.+|.|+.|-.
T Consensus 143 ~~dG~L~v~dl 153 (388)
T 1xip_A 143 NSVNDLSALDL 153 (388)
T ss_dssp ETTSEEEEEET
T ss_pred ECCCCEEEEEc
Confidence 99999999943
No 78
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=50.35 E-value=1.6e+02 Score=27.25 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=11.5
Q ss_pred CeEEEEEcCCcEEEEeC
Q 009463 155 GHSIAVTSKGVVYSFGS 171 (534)
Q Consensus 155 ~h~~~l~~~G~vy~wG~ 171 (534)
.|++++ -+++||++|-
T Consensus 54 ~~~~~~-~~~~lyv~GG 69 (302)
T 2xn4_A 54 RAGMVY-MAGLVFAVGG 69 (302)
T ss_dssp SCEEEE-ETTEEEEESC
T ss_pred cceEEE-ECCEEEEEeC
Confidence 455554 4889999985
No 79
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=50.04 E-value=2.7e+02 Score=29.90 Aligned_cols=204 Identities=11% Similarity=0.018 Sum_probs=100.8
Q ss_pred ccceEEEcC----CCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC----CCeEEEEecCC
Q 009463 145 RENSQAIAG----PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAG 216 (534)
Q Consensus 145 ~~i~~is~G----~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G----~~h~~~Lt~~G 216 (534)
..|..++.- ....+....||.|+.|-... + ...+..........|..++.. ....+..+.||
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~-~---------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-G---------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEET-T---------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCC-C---------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 345566543 34455566889999996432 1 111111111123357777665 44566778889
Q ss_pred cEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec---------------CceEEEEEcCCcEEEEeeCCCC
Q 009463 217 QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---------------NFFTAVLSREGRVYTFSWGNDA 281 (534)
Q Consensus 217 ~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G---------------~~hs~~Lt~~G~vy~wG~n~~g 281 (534)
.|+.|-....... .+..+.. ....|..++.. ....+.-..+|.|+.|-.....
T Consensus 124 ~I~vwdl~~~~~~-----------~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 124 KVSVVEFKENGTT-----------SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp EEEEEECCSSSCC-----------CCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred cEEEEEeecCCCc-----------ceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 9999975432111 0111111 12235555543 3455666789999999543321
Q ss_pred CCCCCCCCCcccccccccccCCcCEEEEEecce---eEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeeccc
Q 009463 282 RLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC---YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL 358 (534)
Q Consensus 282 qlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~---~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~ 358 (534)
+ ...+... .......|..++.... ..++++...+| .|+.|-....... .. . .+.....
T Consensus 192 ~--------~~~~~~~-~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-~I~iwd~~~~~~~------~~--~-~~~~~~~ 252 (753)
T 3jro_A 192 Q--------TYVLEST-LEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQDNEQGP------WK--K-TLLKEEK 252 (753)
T ss_dssp T--------EEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEESSS-CEEEEEESSSSSC------CB--C-CBSSSSC
T ss_pred c--------cceeeee-ecCCCCcEEEEEeccCCCCCCEEEEEecCC-EEEEecCCCCCCc------ce--e-EEeccCC
Confidence 0 0011110 0122345788877665 45555555688 8999964432100 00 0 0000000
Q ss_pred CCCCcE--EEEeCCcEEEEEecCCcEEEEECCC
Q 009463 359 LNLQPV--VVAAGAWHAAVVGQDGRVCTWGWGR 389 (534)
Q Consensus 359 ~~~~i~--~Ia~G~~hs~alt~~G~vy~wG~n~ 389 (534)
....|. .++....+.+.-..||.|+.|-.+.
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 111222 2333344555567899999997654
No 80
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=48.20 E-value=1.7e+02 Score=26.97 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=12.3
Q ss_pred CeEEEEecCCcEEEEecCC
Q 009463 207 GRTMLISDAGQVYAFGKDS 225 (534)
Q Consensus 207 ~h~~~Lt~~G~vy~wG~n~ 225 (534)
.|++++ .+++||.+|-..
T Consensus 55 ~~~~~~-~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVS-LHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEE-ETTEEEEECCBC
T ss_pred cccEEE-ECCEEEEEcCCC
Confidence 455554 468999999643
No 81
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=47.48 E-value=1.7e+02 Score=26.89 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=33.6
Q ss_pred CcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEec-CceEEEEEeCCCEEEEe
Q 009463 362 QPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG-DYTTFVVSEDGDVYSFG 438 (534)
Q Consensus 362 ~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G-~~~t~alt~~G~vy~wG 438 (534)
.|..|+.. ....+.-..||.|..|-.....++ ..+.. ...|..++.- ..+.++...+|.|+.|-
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-----------~~~~~--~~~v~~~~~~~~~~~~~~~~d~~i~iwd 283 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-----------YTLDG--GDIINALCFSPNRYWLCAATGPSIKIWD 283 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----------EEEEC--SSCEEEEEECSSSSEEEEEETTEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-----------eeecC--CceEEeeecCCCCceeeccCCCEEEEEE
Confidence 44455433 334455567889999865432111 11111 1234433332 23455566788899986
Q ss_pred C
Q 009463 439 C 439 (534)
Q Consensus 439 ~ 439 (534)
.
T Consensus 284 ~ 284 (340)
T 4aow_A 284 L 284 (340)
T ss_dssp T
T ss_pred C
Confidence 4
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=46.69 E-value=1.7e+02 Score=26.60 Aligned_cols=147 Identities=8% Similarity=-0.044 Sum_probs=0.0
Q ss_pred EEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCC
Q 009463 256 AAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGL 335 (534)
Q Consensus 256 Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~ 335 (534)
|+=+....++...|+.|+.| +.........+...-....|..++...+...+++...|| .|..|=
T Consensus 31 l~WS~~~~lAvg~D~tV~iW-----------d~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg-~v~iw~--- 95 (318)
T 4ggc_A 31 VDWSSGNVLAVALDNSVYLW-----------SASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-EVQLWD--- 95 (318)
T ss_dssp EEECTTSEEEEEETTEEEEE-----------ETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-EEEEEE---
T ss_pred EEECCCCEEEEEeCCEEEEE-----------ECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC-cEEEee---
Q ss_pred CccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcE
Q 009463 336 GGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKA 415 (534)
Q Consensus 336 ~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i 415 (534)
....+.+..+......+..++......+.-..++.+..|-..... ...............
T Consensus 96 -----------~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 96 -----------VQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCG 155 (318)
T ss_dssp -----------TTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEE
T ss_pred -----------cCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEE
Q ss_pred EEEEecCceEEEEEeCCCEEEE
Q 009463 416 IHVATGDYTTFVVSEDGDVYSF 437 (534)
Q Consensus 416 ~~Va~G~~~t~alt~~G~vy~w 437 (534)
.....-..+.+.-..||.|..|
T Consensus 156 ~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 156 LRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EEECTTSSEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEecCcceeEE
No 83
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=45.28 E-value=1.8e+02 Score=26.51 Aligned_cols=121 Identities=11% Similarity=-0.026 Sum_probs=62.2
Q ss_pred cceEEEcC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC----CCeEEEEecCCcEE
Q 009463 146 ENSQAIAG--PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAGQVY 219 (534)
Q Consensus 146 ~i~~is~G--~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G----~~h~~~Lt~~G~vy 219 (534)
.|..++.. ....+.-..||.|..|=..... ........+.. ....|..++.. ....+....||.|.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-------SNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSS-------CCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-------Ccceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 34444432 2334444578999999644211 00011111111 23367777764 34555667899999
Q ss_pred EEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecC----ceEEEEEcCCcEEEEeeCC
Q 009463 220 AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN----FFTAVLSREGRVYTFSWGN 279 (534)
Q Consensus 220 ~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~----~hs~~Lt~~G~vy~wG~n~ 279 (534)
.|-.+......... . ..+..........|..++... ...+.-+.+|.|+.|-...
T Consensus 85 vwd~~~~~~~~~~~----~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 85 LWEEDPDQEECSGR----R-WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EEEECTTSCTTSSC----S-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EEecCCCccccccc----C-cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 99765422111110 0 011111112234577777654 3566678899999996443
No 84
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=45.25 E-value=2.6e+02 Score=28.28 Aligned_cols=183 Identities=16% Similarity=0.069 Sum_probs=84.6
Q ss_pred cEEEEEeCC--CeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEec--CceEEEEEcCCcEE
Q 009463 198 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVY 273 (534)
Q Consensus 198 ~I~~Is~G~--~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~~Lt~~G~vy 273 (534)
.|..++... ...+....||.|..|-.+.. . ...+.. ....|..++.. ..+.+.-.++|.|.
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------~----~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------H----LQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVK 369 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC----------E----EEEECC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------e----eEEEeC-CCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 465555543 34444567788888853210 0 011111 12235555543 34555567788888
Q ss_pred EEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceee
Q 009463 274 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 353 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i 353 (534)
.|-.+ +++ ...+. .....|..++...+-..+++...++ .|+.|-. .++ .+
T Consensus 370 ~~~~~--~~~----------~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~-~v~~~~~--~~~-------------~~ 419 (577)
T 2ymu_A 370 LWNRN--GQL----------LQTLT--GHSSSVRGVAFSPDGQTIASASDDK-TVKLWNR--NGQ-------------LL 419 (577)
T ss_dssp EEETT--CCE----------EEEEE--CCSSCEEEEEECTTSSCEEEEETTS-EEEEECT--TCC-------------EE
T ss_pred EEcCC--CCE----------EEEec--CCCCCeEEEEECCCCCEEEEEeCCC-EEEEEeC--CCC-------------EE
Confidence 77421 111 01111 1233466666544333333333477 8888831 111 12
Q ss_pred eecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCce--EEEEE
Q 009463 354 EQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYT--TFVVS 429 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~--t~alt 429 (534)
..+......|..++.. ....+.-..||.|+.|-.+ +++ ...+.. ....|..++...+. .+.-.
T Consensus 420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~----------~~~~~~-~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCE----------EEEEEC-CSSCEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCE----------EEEEcC-CCCCEEEEEEcCCCCEEEEEe
Confidence 2222223344444433 3445555678889888532 110 111111 12245555543322 22235
Q ss_pred eCCCEEEEe
Q 009463 430 EDGDVYSFG 438 (534)
Q Consensus 430 ~~G~vy~wG 438 (534)
.|+.|+.|-
T Consensus 487 ~d~~i~iw~ 495 (577)
T 2ymu_A 487 DDKTVKLWN 495 (577)
T ss_dssp TTSEEEEEE
T ss_pred CCCEEEEEc
Confidence 678888885
No 85
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=44.25 E-value=2.3e+02 Score=27.34 Aligned_cols=204 Identities=11% Similarity=-0.035 Sum_probs=0.0
Q ss_pred eEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEe-CCCeEEEEecCCcEEEEecCCC
Q 009463 148 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA-GAGRTMLISDAGQVYAFGKDSF 226 (534)
Q Consensus 148 ~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~-G~~h~~~Lt~~G~vy~wG~n~~ 226 (534)
...+....+.+.-..||.|..| +.........+..........++. .....+.-..||.|..|-....
T Consensus 171 ~~~~p~~~~l~s~s~d~~v~iw-----------d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~ 239 (393)
T 1erj_A 171 LDYFPSGDKLVSGSGDRTVRIW-----------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEE-----------ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCcEEEE-----------ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Q ss_pred CCcccCCCCeeeeecCeEeccCCCceEEEEEe--cCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCc
Q 009463 227 GEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENI 304 (534)
Q Consensus 227 GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 304 (534)
-. ......+.....-....|..++. ...+.+.-..||.|..|-....................... -...
T Consensus 240 ~~-------~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~ 311 (393)
T 1erj_A 240 FL-------VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKD 311 (393)
T ss_dssp CE-------EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE-CCSS
T ss_pred cE-------EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe-cccC
Q ss_pred CEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCC--------cEEEEE
Q 009463 305 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--------WHAAVV 376 (534)
Q Consensus 305 ~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~--------~hs~al 376 (534)
.|..++...+...+++...|| .|+.|- ......+..+......|..++... ...+.-
T Consensus 312 ~v~~~~~~~~~~~l~sgs~D~-~v~iwd--------------~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 312 FVLSVATTQNDEYILSGSKDR-GVLFWD--------------KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp CEEEEEECGGGCEEEEEETTS-EEEEEE--------------TTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCC-eEEEEE--------------CCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Q ss_pred ecCCcEEEE
Q 009463 377 GQDGRVCTW 385 (534)
Q Consensus 377 t~~G~vy~w 385 (534)
..||.|..|
T Consensus 377 s~Dg~i~iW 385 (393)
T 1erj_A 377 SGDCKARIW 385 (393)
T ss_dssp ETTSEEEEE
T ss_pred CCCCcEEEC
No 86
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=44.09 E-value=1.8e+02 Score=26.23 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=11.1
Q ss_pred eEEEEEeCCCEEEEeCC
Q 009463 424 TTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 424 ~t~alt~~G~vy~wG~n 440 (534)
..++++.+|++|+-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 45667777777776643
No 87
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=44.03 E-value=1.1e+02 Score=28.69 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=12.6
Q ss_pred CceEEEEEeCCCEEEEeCC
Q 009463 422 DYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 422 ~~~t~alt~~G~vy~wG~n 440 (534)
..|+++. -++++|++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 3566555 67889999943
No 88
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=42.23 E-value=1.3e+02 Score=24.72 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=52.1
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEE-eCCCeEEEEecCCcEEEEecCCCCC
Q 009463 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA-AGAGRTMLISDAGQVYAFGKDSFGE 228 (534)
Q Consensus 150 is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is-~G~~h~~~Lt~~G~vy~wG~n~~Gq 228 (534)
-.|...+-+-+..||+|-.-.... +.........+. . .++.|. .-..+.+++..+|+||..-.... .
T Consensus 11 ~~~~~g~~L~I~~dG~V~Gt~~~~-------~~~s~l~~~~v~--~--G~V~I~g~~sg~yL~m~~~G~v~Gs~~~s~-e 78 (132)
T 3q7x_A 11 RSTETGQFLRINPDGTVDGTRDRS-------DPGIQFQISPEG--N--GEVLLRSTETGQFLRINPDGTVDGTRDRSD-P 78 (132)
T ss_dssp EETTTCCEEEECTTSBEEEECCTT-------CGGGCEEEEEEE--T--TEEEEEETTTCCEEEECTTSBEEEECC-CC-G
T ss_pred eeccCcEEEEECCCCcEEeecCCC-------CCCcEEEEEecc--c--CEEEEEEEcccEEEEECCCCCEeeccCCCC-C
Confidence 356666677778999998665321 011122233332 1 244443 34456788899999997532110 0
Q ss_pred cccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEE
Q 009463 229 AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 273 (534)
Q Consensus 229 lG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy 273 (534)
+ .. ..... .......|+.+..|. .++++.+|++|
T Consensus 79 c------~f--lE~~~-~~~g~v~ikg~~sg~--YLamnk~G~ly 112 (132)
T 3q7x_A 79 G------IQ--FQISP-EGNGEVLLRSTETGQ--FLRINPDGTVD 112 (132)
T ss_dssp G------GC--EEEEE-EETTEEEEEETTTCC--EEEECTTSBEE
T ss_pred c------ee--EEEEe-ecCcEEEEEeccCCe--EEEECCCCcCc
Confidence 0 00 00000 111122333343444 88999999999
No 89
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=41.75 E-value=2.3e+02 Score=26.82 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=36.9
Q ss_pred cCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC--CcEEEEEecCCc
Q 009463 304 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGR 381 (534)
Q Consensus 304 ~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G--~~hs~alt~~G~ 381 (534)
..|..++..... .+++...+| .|+.|-... ...+..+......|..++.. ....++-..+|.
T Consensus 290 ~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~--------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 290 QSIVSASWVGDD-KVISCSMDG-SVRLWSLKQ--------------NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SCEEEEEEETTT-EEEEEETTS-EEEEEETTT--------------TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred ccEEEEEECCCC-EEEEEeCCC-cEEEEECCC--------------CcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 346666665443 333333577 888885321 11222222223345555443 445666678899
Q ss_pred EEEEECC
Q 009463 382 VCTWGWG 388 (534)
Q Consensus 382 vy~wG~n 388 (534)
|+.|-..
T Consensus 354 i~i~~~~ 360 (425)
T 1r5m_A 354 VNVYDLK 360 (425)
T ss_dssp EEEEECH
T ss_pred EEEEECC
Confidence 9999753
No 90
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=41.55 E-value=1.6e+02 Score=24.71 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=56.2
Q ss_pred ceEEEcCC-CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC-CCeEEEEecCCcEEEEecC
Q 009463 147 NSQAIAGP-GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG-AGRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 147 i~~is~G~-~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G-~~h~~~Lt~~G~vy~wG~n 224 (534)
..++-|-. .+-+-+..||+|-.-.... +.........+. ..++.|-|- ..+.+++..+|+||..-..
T Consensus 32 ~~~LYcr~~g~~LqI~~dG~V~Gt~~~~-------~~~s~lei~sv~----~G~V~L~g~~sg~yL~mn~~G~l~Gs~~~ 100 (142)
T 3p6j_A 32 EVLLKSTETGQYLRINPDGTVDGTRDRS-------DTHIQFQISPEG----NGEVLLKSTETGQYLRINPDGTVDGTRDR 100 (142)
T ss_dssp CEEEEETTTCCEEEECTTSBEEEECCTT-------CGGGCEEEEEEE----TTEEEEEETTTTEEEEECTTSBEEEECCT
T ss_pred EEEEEEeCCCEEEEECCCCCEeeecCCC-------CCceEEEEEEcc----CCEEEEEEecCCEEEeECCCCCEeecccC
Confidence 34566643 5666777899988554321 001112222222 247788765 5688899999999975321
Q ss_pred CCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEE
Q 009463 225 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 273 (534)
Q Consensus 225 ~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy 273 (534)
. .+....-...+......|+.+..|. -++++.+|++|
T Consensus 101 t----------~ecsflEi~~en~y~v~i~g~~sg~--YLamnk~Grly 137 (142)
T 3p6j_A 101 S----------DTHIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVD 137 (142)
T ss_dssp T----------CGGGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEE
T ss_pred C----------CCceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCc
Confidence 1 0100001111122233344444444 89999999999
No 91
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=41.27 E-value=2.1e+02 Score=26.08 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=10.3
Q ss_pred eEEEEEcCCcEEEE
Q 009463 262 FTAVLSREGRVYTF 275 (534)
Q Consensus 262 hs~~Lt~~G~vy~w 275 (534)
..++++.+|++|+-
T Consensus 118 ~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 118 NDVCLAPDGSLWFS 131 (296)
T ss_dssp CCEEECTTSCEEEE
T ss_pred CCEEECCCCCEEEE
Confidence 34777888888874
No 92
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=40.90 E-value=1.8e+02 Score=27.01 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=11.5
Q ss_pred cEEEEEecCCcEEEEEC
Q 009463 371 WHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 371 ~hs~alt~~G~vy~wG~ 387 (534)
.|++++. ++++|..|-
T Consensus 255 ~~~~~~~-~~~i~v~GG 270 (308)
T 1zgk_A 255 ALGITVH-QGRIYVLGG 270 (308)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceEEEEE-CCEEEEEcC
Confidence 4665554 789999984
No 93
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=40.84 E-value=2.6e+02 Score=27.11 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=70.3
Q ss_pred cceEEEcCCCe--EEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCC--CeEEEEecCCcEEEE
Q 009463 146 ENSQAIAGPGH--SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYAF 221 (534)
Q Consensus 146 ~i~~is~G~~h--~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~--~h~~~Lt~~G~vy~w 221 (534)
.|..++..... .+.-..||.|..|-... |++ ...+.. ....|..|+... ...+.-..||.|..|
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-~~~----------~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYET-GDF----------ERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTT-CCC----------CEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcE----------EEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 45555554433 33334789999996432 110 111111 112465555432 334444567888777
Q ss_pred ecCCCCCcccCCCCeeeeecCeEeccC--CCceEEEEEec--CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccccc
Q 009463 222 GKDSFGEAEYGVQGTKLVTSPQLVESL--KNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPL 297 (534)
Q Consensus 222 G~n~~GqlG~g~~~~~~~~~P~~v~~l--~~~~I~~Va~G--~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 297 (534)
-....- .+..+ ....|..++.. ..+.+.-..||.|..|-...... ...+
T Consensus 178 d~~~~~----------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-----------~~~~ 230 (410)
T 1vyh_C 178 DFQGFE----------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------VKTF 230 (410)
T ss_dssp ETTSSC----------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------EEEE
T ss_pred eCCCCc----------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEE
Confidence 543211 11111 12235555553 34556667899999985432110 0011
Q ss_pred ccccCCcCEEEEEecceeEEEeeeeCCCCeEEEee
Q 009463 298 LGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 332 (534)
Q Consensus 298 ~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG 332 (534)
. .....|..++...+-.++++...|| .|..|=
T Consensus 231 ~--~h~~~v~~~~~~~~g~~l~s~s~D~-~v~vwd 262 (410)
T 1vyh_C 231 T--GHREWVRMVRPNQDGTLIASCSNDQ-TVRVWV 262 (410)
T ss_dssp E--CCSSCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred e--CCCccEEEEEECCCCCEEEEEcCCC-eEEEEE
Confidence 1 1122355555544444444544577 888884
No 94
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=39.26 E-value=2.3e+02 Score=25.97 Aligned_cols=69 Identities=6% Similarity=-0.104 Sum_probs=36.7
Q ss_pred cCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC-CcEEEEEecCCcE
Q 009463 304 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-AWHAAVVGQDGRV 382 (534)
Q Consensus 304 ~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G-~~hs~alt~~G~v 382 (534)
..|..|+...+..++++...|| .|..|-..... .+..+.. ...|..++.. ..+.++...+|.|
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~~~--------------~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i 279 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDG-QAMLWDLNEGK--------------HLYTLDG-GDIINALCFSPNRYWLCAATGPSI 279 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTC-EEEEEETTTTE--------------EEEEEEC-SSCEEEEEECSSSSEEEEEETTEE
T ss_pred CcEEEEEECCCCCEEEEEeCCC-eEEEEEeccCc--------------eeeeecC-CceEEeeecCCCCceeeccCCCEE
Confidence 3577776655544555544578 88888533211 1211111 1233333332 3455666778899
Q ss_pred EEEECC
Q 009463 383 CTWGWG 388 (534)
Q Consensus 383 y~wG~n 388 (534)
+.|-..
T Consensus 280 ~iwd~~ 285 (340)
T 4aow_A 280 KIWDLE 285 (340)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999653
No 95
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=37.76 E-value=2.4e+02 Score=26.15 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=12.1
Q ss_pred cEEEEEecCCcEEEEEC
Q 009463 371 WHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 371 ~hs~alt~~G~vy~wG~ 387 (534)
.|+++. .+|++|.+|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 466665 6889999984
No 96
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=37.66 E-value=2.6e+02 Score=26.08 Aligned_cols=179 Identities=11% Similarity=0.086 Sum_probs=85.2
Q ss_pred eEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccC
Q 009463 262 FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGH 341 (534)
Q Consensus 262 hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~ 341 (534)
..+.-+.+|.|..|....... ...+. .....|..++...+-..+++...+| .|+.|-...
T Consensus 136 ~l~~g~~dg~v~i~~~~~~~~-----------~~~~~--~~~~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~------ 195 (321)
T 3ow8_A 136 YLATGTHVGKVNIFGVESGKK-----------EYSLD--TRGKFILSIAYSPDGKYLASGAIDG-IINIFDIAT------ 195 (321)
T ss_dssp EEEEECTTSEEEEEETTTCSE-----------EEEEE--CSSSCEEEEEECTTSSEEEEEETTS-CEEEEETTT------
T ss_pred EEEEEcCCCcEEEEEcCCCce-----------eEEec--CCCceEEEEEECCCCCEEEEEcCCC-eEEEEECCC------
Confidence 344455678888885432110 01111 2233466666554444444444467 788774221
Q ss_pred CCCCCCcCceeeeecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEE
Q 009463 342 GSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA 419 (534)
Q Consensus 342 g~~~~~~~p~~i~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va 419 (534)
.+.+..+......|..++.. ....+.-..||.|..|-...... ...+.. ....|..++
T Consensus 196 --------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~-h~~~v~~~~ 255 (321)
T 3ow8_A 196 --------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-----------AGTLSG-HASWVLNVA 255 (321)
T ss_dssp --------TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-----------EEEECC-CSSCEEEEE
T ss_pred --------CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-----------eEEEcC-CCCceEEEE
Confidence 11222222222234444433 33445556788899996532111 111111 122355555
Q ss_pred ec--CceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEc
Q 009463 420 TG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTE 497 (534)
Q Consensus 420 ~G--~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~ 497 (534)
.. ..+.+.-..||.|..|-... ...+..+......|..++.. . .+..-+....
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~----------------------~~~~~~~~~h~~~v~~v~~s--~-~g~~l~s~~~ 310 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGT----------------------RTCVHTFFDHQDQVWGVKYN--G-NGSKIVSVGD 310 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT----------------------TEEEEEECCCSSCEEEEEEC--T-TSSEEEEEET
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCC----------------------CEEEEEEcCCCCcEEEEEEC--C-CCCEEEEEeC
Confidence 43 23444456788899996321 12233333334456666541 1 1234455668
Q ss_pred CCCEEEEe
Q 009463 498 SGKLYAFG 505 (534)
Q Consensus 498 ~G~vy~wG 505 (534)
||+|..|-
T Consensus 311 d~~i~vwd 318 (321)
T 3ow8_A 311 DQEIHIYD 318 (321)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEEe
Confidence 88888884
No 97
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=37.38 E-value=2.5e+02 Score=25.84 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=12.2
Q ss_pred CceEEEEEeCCCEEEEeC
Q 009463 422 DYTTFVVSEDGDVYSFGC 439 (534)
Q Consensus 422 ~~~t~alt~~G~vy~wG~ 439 (534)
..|++++. ++++|++|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 35666555 789999983
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=36.82 E-value=2.8e+02 Score=26.22 Aligned_cols=196 Identities=9% Similarity=-0.015 Sum_probs=97.4
Q ss_pred ccceEEEcCC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeecc-CCCCcEEEEEeCC---CeEEEEecCCc
Q 009463 145 RENSQAIAGP---GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LQGIRIIQAAAGA---GRTMLISDAGQ 217 (534)
Q Consensus 145 ~~i~~is~G~---~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~-~~~~~I~~Is~G~---~h~~~Lt~~G~ 217 (534)
..|..++.-. ...+.-..||.|..|-....- ....+.. -....|..++... ...+....||.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-----------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-----------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-----------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 3455555443 334455578899999654211 1111111 1233677777644 34555567899
Q ss_pred EEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEe--cCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccccc
Q 009463 218 VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 295 (534)
Q Consensus 218 vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 295 (534)
|..|-... .. ....... .-....|..++. .....+.-+.+|.|+.|-.. ++ ...
T Consensus 143 i~iwd~~~-~~-------~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~----------~~~ 198 (383)
T 3ei3_B 143 TTLRDFSG-SV-------IQVFAKT----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH----------EIF 198 (383)
T ss_dssp EEEEETTS-CE-------EEEEECC----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC----------EEE
T ss_pred EEEEECCC-Cc-------eEEEecc----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC----------EEE
Confidence 99996541 00 0000000 001122444443 34455666788999988531 10 001
Q ss_pred ccccccCCcCEEEEEecceeE-EEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC---Cc
Q 009463 296 PLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG---AW 371 (534)
Q Consensus 296 ~v~~~~~~~~i~~Ia~G~~~~-~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G---~~ 371 (534)
.+. .....|..++...... ++++...|| .|+.|-...... ....+..+. ....|..++.. ..
T Consensus 199 ~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~----------~~~~~~~~~-~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 199 KEK--LHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKD----------KNSYIAEMP-HEKPVNAAYFNPTDST 264 (383)
T ss_dssp EEE--CSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCS----------TTCEEEEEE-CSSCEEEEEECTTTSC
T ss_pred Eec--cCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCc----------ccceEEEec-CCCceEEEEEcCCCCC
Confidence 111 2234577777665544 444444577 888885332100 011111111 23345555543 35
Q ss_pred EEEEEecCCcEEEEECCC
Q 009463 372 HAAVVGQDGRVCTWGWGR 389 (534)
Q Consensus 372 hs~alt~~G~vy~wG~n~ 389 (534)
..+.-..+|.|+.|-...
T Consensus 265 ~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEEESSSEEEEEETTB
T ss_pred EEEEEcCCCcEEEEECCC
Confidence 666667789999997644
No 99
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.20 E-value=3.2e+02 Score=26.76 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=69.8
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC-----CCeEEEEecCCcEEEEecC
Q 009463 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAFGKD 224 (534)
Q Consensus 150 is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G-----~~h~~~Lt~~G~vy~wG~n 224 (534)
++.+..+.+++|+.|++|-+-...--..|... .-...-..++.-.+.+|+.+..- ..+.+++|++|.+.-.--.
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a-~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA-RGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTS-CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCccc-CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 45667778999999999988644321111100 00111122233356788888653 3468899999988877655
Q ss_pred CCCCcccCCCCeeeeecCeEeccCCCceEEE--EEecCceEEEEEcCCcEEEEeeCCCCCCC
Q 009463 225 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQ--AAIGNFFTAVLSREGRVYTFSWGNDARLG 284 (534)
Q Consensus 225 ~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~--Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG 284 (534)
.+-..... .... +..-.+..++. +..+..+.+++|++|++..+-...--.+|
T Consensus 132 e~~~~~~~--G~~a------i~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 132 EFAFRLAR--GKIA------INLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp GGCSCCTT--CEES------SCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred HhhcccCC--ceEE------EEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 44321100 0000 11111223333 33467789999999999988655433333
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=34.54 E-value=3.3e+02 Score=26.48 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=36.3
Q ss_pred ceEEEEEec---CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCe
Q 009463 251 IFVVQAAIG---NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMA 327 (534)
Q Consensus 251 ~~I~~Va~G---~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~ 327 (534)
..|..|+.. ....+.-..||.|..|-........ ...........|..++...+...+++...|| .
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-~ 319 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----------SFLYSLPHRHPVNAACFSPDGARLLTTDQKS-E 319 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----------CCSBCCBCSSCEEECCBCTTSSEEEEEESSS-C
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccc----------eEEEeeeccccccceeECCCCCeeEEEcCCC-E
Confidence 347777653 2223334578888888433211110 0000001223466666554444455555588 8
Q ss_pred EEEeee
Q 009463 328 VYSVGC 333 (534)
Q Consensus 328 vy~wG~ 333 (534)
|+.|-.
T Consensus 320 i~iwd~ 325 (435)
T 4e54_B 320 IRVYSA 325 (435)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 988854
No 101
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=34.40 E-value=3.1e+02 Score=26.02 Aligned_cols=245 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred eEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC-----CCeEEEEecCCcEEEEe
Q 009463 148 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAFG 222 (534)
Q Consensus 148 ~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G-----~~h~~~Lt~~G~vy~wG 222 (534)
..++.+..+.+++|+.|++|..-...--..|... .-......++..++.+|+.+... ..+.+++|++|.++-.-
T Consensus 52 ~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~ 130 (312)
T 1suu_A 52 ALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS-KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFE 130 (312)
T ss_dssp EEEEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC-CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEE
Q ss_pred cCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEe--cCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccc
Q 009463 223 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT 300 (534)
Q Consensus 223 ~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 300 (534)
-.++ ......--..+..-.+..++.+.. +..+.+++|++|.+..+-..+.-..|...........
T Consensus 131 l~~~--------~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L----- 197 (312)
T 1suu_A 131 STDF--------KAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL----- 197 (312)
T ss_dssp GGGG--------CC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-----
T ss_pred HHHh--------hccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-----
Q ss_pred cCCcCEEEEEe--cceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecc-cCCCCcEE--EEeCCcEEEE
Q 009463 301 LENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ-LLNLQPVV--VAAGAWHAAV 375 (534)
Q Consensus 301 ~~~~~i~~Ia~--G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~-~~~~~i~~--Ia~G~~hs~a 375 (534)
.++..|+.+.. ...+.+++++ +| .+.-.-...+-..+.+..-. .+..+. .....++. ........++
T Consensus 198 ~~~d~vv~~~~v~~~~~l~~vt~--~G-~~kr~~~~e~~~~~R~~kGv-----~~~~~~k~~~~~lv~~~~~~~~~~l~~ 269 (312)
T 1suu_A 198 KEGDLFVKVLSVKENPYLLIVSE--NG-YGKRLNMSKISELKRGATGY-----TSYKKSDKKAGSVVDAIAVSEDDEILL 269 (312)
T ss_dssp CTTCCEEEEEECTTCSEEEEEET--TS-EEEEEEGGGSCBCCTTCCCE-----ECSCTTCTTTCSEEEEEEECTTCEEEE
T ss_pred CCCCEEEEEEEECCCCeEEEEEC--CC-ceEEEEHHHhcccCCCCCCE-----EeeEccCCCCCeEEEEEEeCCCCEEEE
Q ss_pred EecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEE
Q 009463 376 VGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA 419 (534)
Q Consensus 376 lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va 419 (534)
++++|.+...-.++....+....... .+..- +.+|+.++
T Consensus 270 ~t~~g~~~r~~~~~i~~~~R~~~G~~----l~~l~-~~~v~~~~ 308 (312)
T 1suu_A 270 VSKRSKALRTVAGKVSEQGKDARGIQ----VLFLD-NDSLVSVS 308 (312)
T ss_dssp EETTCEEEEEEGGGSCBCCTTCCCEE----CSCCS-SCCEEEEE
T ss_pred EeCCCeEEEEEcccCCccCccCCCeE----EEECC-CCEEEEEE
No 102
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=33.59 E-value=5.7e+02 Score=28.91 Aligned_cols=108 Identities=11% Similarity=0.000 Sum_probs=54.0
Q ss_pred cEEEEEeCC--CeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecC--ce--EEEEEcCCc
Q 009463 198 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FF--TAVLSREGR 271 (534)
Q Consensus 198 ~I~~Is~G~--~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~--~h--s~~Lt~~G~ 271 (534)
.|..++... ...+....||.|..|-.... ++ . ..+. .....|..++... .. .+.-..+|.
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~---------~---~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATG-KL---------V---HTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTC-CE---------E---EEEE-CCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCC-ce---------E---EEEc-CCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 566665543 34555567888999865421 10 0 0011 1123455555533 22 333467899
Q ss_pred EEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeee
Q 009463 272 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 333 (534)
Q Consensus 272 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~ 333 (534)
|..|-...... ...+. .....|..++...+...+++...+| .|..|-.
T Consensus 725 v~vwd~~~~~~-----------~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg-~v~vwd~ 772 (1249)
T 3sfz_A 725 LKLWDLNQKEC-----------RNTMF--GHTNSVNHCRFSPDDELLASCSADG-TLRLWDV 772 (1249)
T ss_dssp EEEEETTSSSE-----------EEEEC--CCSSCEEEEEECSSTTEEEEEESSS-EEEEEEG
T ss_pred EEEEECCCcch-----------hheec--CCCCCEEEEEEecCCCEEEEEECCC-eEEEEeC
Confidence 99985432110 00111 1223466666555444444444577 8888853
No 103
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=33.45 E-value=3e+02 Score=25.57 Aligned_cols=207 Identities=8% Similarity=-0.096 Sum_probs=94.0
Q ss_pred eEEEEEec--CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEE
Q 009463 252 FVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 329 (534)
Q Consensus 252 ~I~~Va~G--~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy 329 (534)
.|..++.. ....+.-..+|.|+.|-..... ..+.. ........|..++...+...+++...+| .|+
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~ 121 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----------WKPTL-VILRINRAARCVRWAPNEKKFAVGSGSR-VIS 121 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETTE----------EEEEE-ECCCCSSCEEEEEECTTSSEEEEEETTS-SEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCCe----------eeeeE-EeecCCCceeEEEECCCCCEEEEEeCCC-EEE
Confidence 45555543 3445556778999988542210 00111 0001233466666554433333333467 787
Q ss_pred EeeeCCCccccCCCCCCCcCceeeeec-ccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCC-----CCc
Q 009463 330 SVGCGLGGKLGHGSRTDEKHPRLIEQF-QLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNE-----ECE 401 (534)
Q Consensus 330 ~wG~n~~gqLG~g~~~~~~~p~~i~~~-~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~-----~~~ 401 (534)
.|=...... ......+ ......|..++.. ....+.-..+|.|+.|-..... +..... ...
T Consensus 122 i~d~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~ 189 (372)
T 1k8k_C 122 ICYFEQEND-----------WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERPAPTPWGSKM 189 (372)
T ss_dssp EEEEETTTT-----------EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCCCCBTTBSCC
T ss_pred EEEecCCCc-----------ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc-cccccccccccccc
Confidence 775432211 0001111 1112345555443 4455666789999999743211 000000 000
Q ss_pred cccEEeccc--CCCcEEEEEecC--ceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceE
Q 009463 402 SVPKVVQAL--NDVKAIHVATGD--YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERV 477 (534)
Q Consensus 402 ~~P~~v~~l--~~~~i~~Va~G~--~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v 477 (534)
.....+..+ ....|..++... .+.+....||.|+.|-... ...+..+......+
T Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~~~~~~~~v 247 (372)
T 1k8k_C 190 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----------------------KMAVATLASETLPL 247 (372)
T ss_dssp CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG----------------------TTEEEEEECSSCCE
T ss_pred chhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------CceeEEEccCCCCe
Confidence 011122212 122455555432 3444456677888885431 11122222223345
Q ss_pred EEEEeeeccccccEEEEEEcCCCEEEEeCCC
Q 009463 478 VQISLTNSIYWNAHTFALTESGKLYAFGAGD 508 (534)
Q Consensus 478 ~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~ 508 (534)
..++.. -....++...+|.|+.|-...
T Consensus 248 ~~~~~~----~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 248 LAVTFI----TESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEE----ETTEEEEEETTSSCEEEEEET
T ss_pred EEEEEe----cCCCEEEEEeCCeEEEEEccC
Confidence 555441 123455666889999887644
No 104
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=33.38 E-value=2.8e+02 Score=25.31 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=12.3
Q ss_pred CeEEEEEcCCcEEEEeCCC
Q 009463 155 GHSIAVTSKGVVYSFGSNS 173 (534)
Q Consensus 155 ~h~~~l~~~G~vy~wG~n~ 173 (534)
.|++++ .++++|++|-..
T Consensus 55 ~~~~~~-~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVS-LHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEE-ETTEEEEECCBC
T ss_pred cccEEE-ECCEEEEEcCCC
Confidence 455555 568999999543
No 105
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=33.01 E-value=2.9e+02 Score=25.31 Aligned_cols=167 Identities=12% Similarity=0.021 Sum_probs=77.1
Q ss_pred CceEEEEEec-CceEEEEEcCCcE-EEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCe
Q 009463 250 NIFVVQAAIG-NFFTAVLSREGRV-YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMA 327 (534)
Q Consensus 250 ~~~I~~Va~G-~~hs~~Lt~~G~v-y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~ 327 (534)
+.++.-..++ ....++++.+|++ +.|+.... + ......|..+.. ..+..+.-...+.....++.. +|..
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~-~~~G~~lv~~~~~~~v~~~d~--~G~~ 157 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINK-NKKGNYLVPLFATSEVREIAP--NGQL 157 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEE-CTTSCEEEEETTTTEEEEECT--TSCE
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceE-CCCCCEEEEecCCCEEEEECC--CCCE
Confidence 4445444555 5556667788874 44443211 0 000111222211 222334323333344444444 5767
Q ss_pred EEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecC-Cc-EEEEECCCCCccCCCCCCCccccE
Q 009463 328 VYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQD-GR-VCTWGWGRYGCLGHGNEECESVPK 405 (534)
Q Consensus 328 vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~-G~-vy~wG~n~~GqLG~g~~~~~~~P~ 405 (534)
+|.++.. ..|..+... .+-+++-........++++.+ |+ +|.++.+... . .....|.
T Consensus 158 ~w~~~~~-------------~~~~~~~~~--~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~---~---~~l~~~~ 216 (276)
T 3no2_A 158 LNSVKLS-------------GTPFSSAFL--DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE---G---VQLFFVA 216 (276)
T ss_dssp EEEEECS-------------SCCCEEEEC--TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB---S---CCCSEEE
T ss_pred EEEEECC-------------CCccceeEc--CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC---C---ccccccc
Confidence 7777642 112222222 222333223334457777777 76 6666643211 0 0122344
Q ss_pred EecccCCCcEEEEEe--c---------CceEEEEEeCCCEEEEeCCCCCCCCCC
Q 009463 406 VVQALNDVKAIHVAT--G---------DYTTFVVSEDGDVYSFGCGESASLGHN 448 (534)
Q Consensus 406 ~v~~l~~~~i~~Va~--G---------~~~t~alt~~G~vy~wG~n~~gqLG~~ 448 (534)
-+..+.+-.+. |+. | ....+.++.+|++ .|=.+....+|.-
T Consensus 217 ~~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~~ 268 (276)
T 3no2_A 217 QLFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGMI 268 (276)
T ss_dssp EEEECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCCC
T ss_pred cceEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccce
Confidence 44444444443 343 2 3357888888886 7776666555543
No 106
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=32.29 E-value=3.3e+02 Score=25.76 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=106.6
Q ss_pred cEEEEEeC-CCeEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecC--ceEEEEEcCCcEEE
Q 009463 198 RIIQAAAG-AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVYT 274 (534)
Q Consensus 198 ~I~~Is~G-~~h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~--~hs~~Lt~~G~vy~ 274 (534)
.|..++-. ....++-..+|.|..|--.....+ ........-....|..++... ...+.-..+|.|..
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~----------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESL----------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeecccccee----------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 36666533 334555567788888843221110 000000011123466666543 34444567899998
Q ss_pred EeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEeccee-EEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceee
Q 009463 275 FSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 353 (534)
Q Consensus 275 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~-~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i 353 (534)
|-...... ...+. .....|..++..... .++++...|| .|..|=.... .+...
T Consensus 166 wd~~~~~~-----------~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~dg-~v~~wd~~~~------------~~~~~ 219 (357)
T 4g56_B 166 WDLSQKAV-----------LKSYN--AHSSEVNCVAACPGKDTIFLSCGEDG-RILLWDTRKP------------KPATR 219 (357)
T ss_dssp EETTTTEE-----------EEEEC--CCSSCEEEEEECTTCSSCEEEEETTS-CEEECCTTSS------------SCBCB
T ss_pred EECCCCcE-----------EEEEc--CCCCCEEEEEEccCCCceeeeeccCC-ceEEEECCCC------------ceeee
Confidence 84332100 01111 123357777654321 2333333477 8888832111 01111
Q ss_pred eecccCCCCcEEEEeC---CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEec---CceEEE
Q 009463 354 EQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG---DYTTFV 427 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G---~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G---~~~t~a 427 (534)
..+......+..++.. ....+.-..+|.|+.|-... ++ ....+.. ....|..|+.. ....+.
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~----------~~~~~~~-~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PD----------SAQTSAV-HSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GG----------GCEEECC-CSSCEEEEEECSSSSCCEEE
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCC-Cc----------EeEEEec-cceeEEEEEEcCCCCCEEEE
Confidence 1111122234555543 22333346789999996432 11 1111221 22356666643 233333
Q ss_pred EEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCC
Q 009463 428 VSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAG 507 (534)
Q Consensus 428 lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n 507 (534)
-..||.|+.|=... + ..+..+ .....|..|+. +-.....-+....||+|+.|=..
T Consensus 288 gs~D~~i~iwd~~~-~---------------------~~~~~~-~H~~~V~~vaf--sP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 288 ISEDCTVAVLDADF-S---------------------EVFRDL-SHRDFVTGVAW--SPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EETTSCEEEECTTS-C---------------------EEEEEC-CCSSCEEEEEE--CSSSTTEEEEEETTSCEEEEECC
T ss_pred EeCCCEEEEEECCC-C---------------------cEeEEC-CCCCCEEEEEE--eCCCCCEEEEEcCCCeEEEEECC
Confidence 56789999994221 1 112222 12345666654 10012233345689999999765
Q ss_pred CCC
Q 009463 508 DKG 510 (534)
Q Consensus 508 ~~G 510 (534)
..+
T Consensus 343 ~~~ 345 (357)
T 4g56_B 343 SEG 345 (357)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 107
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=31.22 E-value=2.9e+02 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=11.9
Q ss_pred CeEEEEEcCCcEEEEeC
Q 009463 155 GHSIAVTSKGVVYSFGS 171 (534)
Q Consensus 155 ~h~~~l~~~G~vy~wG~ 171 (534)
-+.++++.+|++|+-..
T Consensus 17 ~~~i~~d~~g~l~v~~~ 33 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQH 33 (299)
T ss_dssp EEEEEECTTSCEEEEET
T ss_pred ccceEECCCCCEEEEec
Confidence 35677778888887654
No 108
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=31.03 E-value=1e+02 Score=30.53 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.1
Q ss_pred EEEEEecCceEEEEEeCCCEEEEeCC
Q 009463 415 AIHVATGDYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 415 i~~Va~G~~~t~alt~~G~vy~wG~n 440 (534)
|.+|+. +...+++.++|.|..|=-.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~ 114 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLE 114 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESS
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEch
Confidence 888999 7788888899999999744
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=30.63 E-value=3.2e+02 Score=25.02 Aligned_cols=194 Identities=10% Similarity=-0.060 Sum_probs=93.1
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEe--CCC-eEEEEecCCcEEEEecCCCCCcccC
Q 009463 156 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA--GAG-RTMLISDAGQVYAFGKDSFGEAEYG 232 (534)
Q Consensus 156 h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~--G~~-h~~~Lt~~G~vy~wG~n~~GqlG~g 232 (534)
..+.-..||.|+.|-..... ....+..+.. ....|..++. ... ..+.-..+|.|+.|-.+..+++
T Consensus 25 ~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--- 92 (342)
T 1yfq_A 25 LLLITSWDGSLTVYKFDIQA--------KNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--- 92 (342)
T ss_dssp EEEEEETTSEEEEEEEETTT--------TEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---
T ss_pred EEEEEcCCCeEEEEEeCCCC--------ccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---
Confidence 34444578889888644211 0111111211 2234555554 344 5666678899999964111211
Q ss_pred CCCeeeeecCeEecc-CCCceEEEEEec-CceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEE
Q 009463 233 VQGTKLVTSPQLVES-LKNIFVVQAAIG-NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIA 310 (534)
Q Consensus 233 ~~~~~~~~~P~~v~~-l~~~~I~~Va~G-~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia 310 (534)
..+.. .....|..++.. ....+.-..+|.|+.|-...... ........+.... .....|..++
T Consensus 93 ----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~--~~~~~v~~~~ 157 (342)
T 1yfq_A 93 ----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLNSNNT--KVKNKIFTMD 157 (342)
T ss_dssp ----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESCSSSS--SSCCCEEEEE
T ss_pred ----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCeeeEE--eeCCceEEEE
Confidence 11111 022345555544 45666677899999984332000 0000000011110 1234577777
Q ss_pred ecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC---CcEEEEEecCCcEEEEEC
Q 009463 311 AGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 311 ~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G---~~hs~alt~~G~vy~wG~ 387 (534)
......++.. .+| .|+.|-....+. ........ .....|..++.. ....++-..+|.+..|-.
T Consensus 158 ~~~~~l~~~~--~d~-~i~i~d~~~~~~---------~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 158 TNSSRLIVGM--NNS-QVQWFRLPLCED---------DNGTIEES--GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp ECSSEEEEEE--STT-EEEEEESSCCTT---------CCCEEEEC--SCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred ecCCcEEEEe--CCC-eEEEEECCcccc---------ccceeeec--CCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 7766633333 477 999996432111 00111111 122234455443 356666678899999876
Q ss_pred CCC
Q 009463 388 GRY 390 (534)
Q Consensus 388 n~~ 390 (534)
...
T Consensus 224 ~~~ 226 (342)
T 1yfq_A 224 DDQ 226 (342)
T ss_dssp CTT
T ss_pred cCC
Confidence 543
No 110
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=30.30 E-value=3.6e+02 Score=25.62 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=38.3
Q ss_pred CcEEEEeCCc---EEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEE-EeCCCEEEE
Q 009463 362 QPVVVAAGAW---HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVV-SEDGDVYSF 437 (534)
Q Consensus 362 ~i~~Ia~G~~---hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~al-t~~G~vy~w 437 (534)
.|..++.... ..+.-..+|.|+.|-.....+ ....+.......|..+.......++. ..||.|+.|
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLD 361 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEE
Confidence 4555555432 666677889999996543211 11222222333455555554444443 467899999
Q ss_pred eCC
Q 009463 438 GCG 440 (534)
Q Consensus 438 G~n 440 (534)
-..
T Consensus 362 ~~~ 364 (420)
T 3vl1_A 362 IIS 364 (420)
T ss_dssp EEC
T ss_pred ecc
Confidence 754
No 111
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.97 E-value=3.3e+02 Score=25.00 Aligned_cols=128 Identities=15% Similarity=0.148 Sum_probs=68.8
Q ss_pred EEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEec--CceEEEEEeCCCEEEEeCCCCC
Q 009463 366 VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCGESA 443 (534)
Q Consensus 366 Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G--~~~t~alt~~G~vy~wG~n~~g 443 (534)
.+....+.+++|+.|++|..-..+ +-.+...-......+....+.+|+.+... ..+-+++|++|.+.-.=..++-
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~e---lp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~ 116 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPIT---LPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 116 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGG---SCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHH---CCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhc
Confidence 445567899999999999986543 21111111111112333346678888763 3446778999977766544331
Q ss_pred CCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCC
Q 009463 444 SLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 514 (534)
Q Consensus 444 qLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~ 514 (534)
....+ -..+-.+.. +..++.+.... .+..+.+++|++|++.-+-.++--.+|.
T Consensus 117 ~~~r~---------------G~~~i~L~~-~d~lv~~~~~~--~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 117 ARNRA---------------GKALITLPE-NAHVMPPVVIE--DASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCSTT---------------CEECBCCCT-TCCBCCCEECC--CTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred ccCcC---------------ceEEEEECC-CCEEEEEEEec--CCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 11111 111112211 12333332210 1456888899999998887665544444
No 112
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=29.20 E-value=3.3e+02 Score=24.76 Aligned_cols=190 Identities=9% Similarity=-0.008 Sum_probs=90.8
Q ss_pred cEEEEEeCCC--eEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecC--ceEEEEEcCCcEE
Q 009463 198 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVY 273 (534)
Q Consensus 198 ~I~~Is~G~~--h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~--~hs~~Lt~~G~vy 273 (534)
.|..++.... ..+.-..||.|..|..... ++ ...+.. ....|..++... ...+.-..||.|.
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~------------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KF------------EKTISG-HKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CE------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-cc------------chhhcc-CCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 4666655433 4445567888988875321 10 011111 123366666543 3445556789999
Q ss_pred EEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceee
Q 009463 274 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 353 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i 353 (534)
.|-...... ...+. .....|..++.......+++...+| .|+.|-.... ..+
T Consensus 91 vwd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~--------------~~~ 142 (312)
T 4ery_A 91 IWDVSSGKC-----------LKTLK--GHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVKTG--------------KCL 142 (312)
T ss_dssp EEETTTCCE-----------EEEEE--CCSSCEEEEEECSSSSEEEEEETTS-CEEEEETTTC--------------CEE
T ss_pred EEECCCCcE-----------EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCC--------------EEE
Confidence 885332110 01111 1223455555544444444444577 8888843211 112
Q ss_pred eecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEe--cCceEEEEE
Q 009463 354 EQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT--GDYTTFVVS 429 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~--G~~~t~alt 429 (534)
..+......|..++.. ....+.-..+|.|..|-...... ...+.......+..++. .....++-.
T Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----------LKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 2222222234444432 34555667788899986532110 11111111223333333 334455566
Q ss_pred eCCCEEEEeCC
Q 009463 430 EDGDVYSFGCG 440 (534)
Q Consensus 430 ~~G~vy~wG~n 440 (534)
.+|.|+.|-..
T Consensus 212 ~d~~i~iwd~~ 222 (312)
T 4ery_A 212 LDNTLKLWDYS 222 (312)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 78889998643
No 113
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=28.98 E-value=3.4e+02 Score=24.81 Aligned_cols=234 Identities=13% Similarity=0.013 Sum_probs=112.7
Q ss_pred cEEEEEeCCC--eEEEEecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccCCCceEEEE--EecCceEEEEEcCCcEE
Q 009463 198 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQA--AIGNFFTAVLSREGRVY 273 (534)
Q Consensus 198 ~I~~Is~G~~--h~~~Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~V--a~G~~hs~~Lt~~G~vy 273 (534)
.|..|+...+ ..+.-..||.|..|-.... + . ...+.. ....|..+ .......+.-..||.|.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~---------~---~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-V---------E---VRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT-E---------E---EEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCC-c---------e---eEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 4666655433 3444456888888854321 1 0 011111 11223333 33344555667889999
Q ss_pred EEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceee
Q 009463 274 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 353 (534)
Q Consensus 274 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i 353 (534)
.|-...... ...+. .....|..++......++++...|| .|..|-...... ..
T Consensus 81 vwd~~~~~~-----------~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~-------------~~ 133 (304)
T 2ynn_A 81 VFNYNTGEK-----------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNWA-------------LE 133 (304)
T ss_dssp EEETTTCCE-----------EEEEE--CCSSCEEEEEECSSSSEEEEEETTS-CEEEEEGGGTTE-------------EE
T ss_pred EEECCCCcE-----------EEEEe--CCCCcEEEEEEcCCCCEEEEECCCC-eEEEEECCCCcc-------------hh
Confidence 885432110 11111 2233577777766655666666688 888885321111 11
Q ss_pred eecccCCCCcEEEEeC---CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEe----cCceEE
Q 009463 354 EQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT----GDYTTF 426 (534)
Q Consensus 354 ~~~~~~~~~i~~Ia~G---~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~----G~~~t~ 426 (534)
..+......|..++.. ....+.-..||.|..|-..... ....+.......+..+.. .....+
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----------ccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 1122223345555543 3455556789999999653211 011111111122333332 112334
Q ss_pred EEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeC
Q 009463 427 VVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 506 (534)
Q Consensus 427 alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~ 506 (534)
.-..||.|..|-... ...+..+......|..++.. - ....-+.-..||.|..|-.
T Consensus 203 s~s~D~~i~iWd~~~----------------------~~~~~~~~~h~~~v~~~~~~--p-~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 203 TASDDLTIKIWDYQT----------------------KSCVATLEGHMSNVSFAVFH--P-TLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp EEETTSEEEEEETTT----------------------TEEEEEEECCSSCEEEEEEC--S-SSSEEEEEETTSCEEEEET
T ss_pred EEcCCCeEEEEeCCC----------------------CccceeeCCCCCCEEEEEEC--C-CCCEEEEEcCCCeEEEEEC
Confidence 456788999996431 12233333333445555441 1 1123444567899999976
Q ss_pred CC
Q 009463 507 GD 508 (534)
Q Consensus 507 n~ 508 (534)
..
T Consensus 258 ~~ 259 (304)
T 2ynn_A 258 ST 259 (304)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=28.73 E-value=3.7e+02 Score=25.28 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=72.7
Q ss_pred CEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEE--ecCCcE
Q 009463 305 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVV--GQDGRV 382 (534)
Q Consensus 305 ~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~al--t~~G~v 382 (534)
+|..++......++.. ++ .|+.|-..... +.+..+.. ...+..++. ...++. ..+|.|
T Consensus 102 ~v~~v~~~~~~~~~~~---~~-~i~i~d~~~~~-------------~~~~~~~~-~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 102 PVKDLFLSREFIVVSY---GD-VISVFKFGNPW-------------KRITDDIR-FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp CEEEEEECSSEEEEEE---TT-EEEEEESSTTC-------------CBSSCCEE-EEEEEEEET--TEEEEEESSCTTCE
T ss_pred ceEEEEEcCCEEEEEE---cC-EEEEEECCCCc-------------eeeEEecc-CCceEEEEc--cEEEEeCCCcCcEE
Confidence 5777777766655544 77 89998643220 11111110 111223333 222222 578999
Q ss_pred EEEECCCCCccCCCCC---CCcccc-EEecccCCCcEEEEEecCce--EEEEEeCCC-EEEEeCCCCCCCCCCCCCCCCC
Q 009463 383 CTWGWGRYGCLGHGNE---ECESVP-KVVQALNDVKAIHVATGDYT--TFVVSEDGD-VYSFGCGESASLGHNAIADGQG 455 (534)
Q Consensus 383 y~wG~n~~GqLG~g~~---~~~~~P-~~v~~l~~~~i~~Va~G~~~--t~alt~~G~-vy~wG~n~~gqLG~~~~~~~~~ 455 (534)
..|-.....+.-.... .....| ...-.-....|..++...+. .+.-..||. |..|-....
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~------------- 228 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG------------- 228 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-------------
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-------------
Confidence 9997654322111100 001112 11111122356666654433 333456787 888864321
Q ss_pred CCccccccCeEeeecc-c-ccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCC
Q 009463 456 NRHANVLTPQLVTSLK-Q-VNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 508 (534)
Q Consensus 456 ~~~~~~~~P~~v~~l~-~-~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~ 508 (534)
..+..+. . ....|..++.. - .+.+-+.-..||.|..|-...
T Consensus 229 ---------~~~~~~~~g~h~~~v~~~~~s--~-~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 229 ---------VLVREFRRGLDRADVVDMKWS--T-DGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp ---------CEEEEEECTTCCSCEEEEEEC--T-TSCEEEEEETTCEEEEEESSC
T ss_pred ---------cEEEEEEcCCCCCcEEEEEEC--C-CCCEEEEEECCCEEEEEEccC
Confidence 1122222 1 23445555541 1 224555567889999997654
No 115
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=28.29 E-value=2.6e+02 Score=23.30 Aligned_cols=107 Identities=16% Similarity=0.060 Sum_probs=57.4
Q ss_pred CCcCEEEEEecc-eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC-CcEEEEEecC
Q 009463 302 ENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-AWHAAVVGQD 379 (534)
Q Consensus 302 ~~~~i~~Ia~G~-~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G-~~hs~alt~~ 379 (534)
+.....++-|-. .+-+-+.. || .|-.-... .+...--.+.. ....++.|.|- ....+++..+
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~--dG-~V~Gt~~~----------~~~~s~lei~s---v~~G~V~L~g~~sg~yL~mn~~ 91 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINP--DG-TVDGTRDR----------SDTHIQFQISP---EGNGEVLLKSTETGQYLRINPD 91 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECT--TS-BEEEECCT----------TCGGGCEEEEE---EETTEEEEEETTTTEEEEECTT
T ss_pred ccCcEEEEEEeCCCEEEEECC--CC-CEeeecCC----------CCCceEEEEEE---ccCCEEEEEEecCCEEEeECCC
Confidence 445577888865 34444443 78 77643211 11111111222 23357888876 5788999999
Q ss_pred CcEEEEECCCCCccCCCCCCCccccEEecccCC--CcEEEEEecCceEEEEEeCCCEEE
Q 009463 380 GRVCTWGWGRYGCLGHGNEECESVPKVVQALND--VKAIHVATGDYTTFVVSEDGDVYS 436 (534)
Q Consensus 380 G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~--~~i~~Va~G~~~t~alt~~G~vy~ 436 (534)
|+||+--. . .......++..... ..+..+..| ..+|++++|++|.
T Consensus 92 G~l~Gs~~--~--------t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 92 GTVDGTRD--R--------SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp SBEEEECC--T--------TCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred CCEeeccc--C--------CCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 99996421 1 11223333332222 223333334 4799999999995
No 116
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=27.56 E-value=4.2e+02 Score=25.46 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=55.6
Q ss_pred cceEEEcCC--CeEEEEEcCCcEEEEeCC--CCCCcCCCCCcceeeceeeccC------CCCcEEEEEe----CCCeEEE
Q 009463 146 ENSQAIAGP--GHSIAVTSKGVVYSFGSN--SSGQLGHGTTEEEWRPRPIRSL------QGIRIIQAAA----GAGRTML 211 (534)
Q Consensus 146 ~i~~is~G~--~h~~~l~~~G~vy~wG~n--~~GqLG~g~~~~~~~P~~v~~~------~~~~I~~Is~----G~~h~~~ 211 (534)
.|..++.-. ...+....||.|..|-.. ..|++ ........+..+ ....+..+.. .....+.
T Consensus 113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE-----VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE-----EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce-----eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 455555433 344555678999988542 12211 001111111110 2334555542 2445566
Q ss_pred EecCCcEEEEecCCCCCcccCCCCeeeeecCeEeccC-CCceEEEEEec--CceEEEEEcCCcEEEEee
Q 009463 212 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESL-KNIFVVQAAIG--NFFTAVLSREGRVYTFSW 277 (534)
Q Consensus 212 Lt~~G~vy~wG~n~~GqlG~g~~~~~~~~~P~~v~~l-~~~~I~~Va~G--~~hs~~Lt~~G~vy~wG~ 277 (534)
-+.||.|+.|-.... + . ...+... ....|..++.. ....+.-+.+|.|..|-.
T Consensus 188 ~~~d~~i~iwd~~~~-~---------~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 188 LTNLSRVIIFDIRTL-E---------R---LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp EETTSEEEEEETTTC-C---------E---EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred EeCCCeEEEEeCCCC-e---------e---eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 677888888865321 1 0 0111110 12346666664 334555678899999853
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=27.30 E-value=5.6e+02 Score=26.85 Aligned_cols=159 Identities=12% Similarity=0.001 Sum_probs=76.0
Q ss_pred eEEEEEecC--ceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEE
Q 009463 252 FVVQAAIGN--FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 329 (534)
Q Consensus 252 ~I~~Va~G~--~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy 329 (534)
.|..|+-.. ...++.+.+|.|..|.. .+.+..-. ... + .....+..++-..+--++.+...|| +|-
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~--~~~l~~l~-~~~--~------~~~~sv~svafSPDG~~LAsgs~DG-tVk 154 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKD--NKMLTNLD-SKG--N------LSSRTYHCFEWNPIESSIVVGNEDG-ELQ 154 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEET--TEEEEECC-CSS--C------STTTCEEEEEECSSSSCEEEEETTS-EEE
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeC--Cceeeecc-CCC--c------cccccEEEEEEcCCCCEEEEEcCCC-EEE
Confidence 355555543 34567889999999952 11111100 000 0 1112355555444333333333467 777
Q ss_pred EeeeCCCccccCCCCCCCcCce--eeeec----ccCCCCcEEEEeCCcEEEEEecCCcEEEEECCCCCccCCCCCCCccc
Q 009463 330 SVGCGLGGKLGHGSRTDEKHPR--LIEQF----QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESV 403 (534)
Q Consensus 330 ~wG~n~~gqLG~g~~~~~~~p~--~i~~~----~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~ 403 (534)
.|=... +. ...|+ .+..+ ......|.+|+-..+..++-..|+.|+.|-.....+ ...
T Consensus 155 IWd~~~-~~--------l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~--------~~~ 217 (588)
T 2j04_A 155 FFSIRK-NS--------ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH--------QPV 217 (588)
T ss_dssp EEECCC-CT--------TTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS--------CCC
T ss_pred EEECCC-Cc--------cccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc--------ccc
Confidence 775322 11 11121 12222 111235666665544455667788899996543221 011
Q ss_pred cEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCC
Q 009463 404 PKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 404 P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n 440 (534)
+..+.......|.+|+.. ...+|.+.+|.|..|-..
T Consensus 218 ~~tL~~~h~~~V~svaFs-g~~LASa~~~tIkLWd~~ 253 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV-DYKVVLTCPGYVHKIDLK 253 (588)
T ss_dssp EEEEECCCSSCCCCEEEE-TTEEEEECSSEEEEEETT
T ss_pred eeeecccccCcEEEEEEE-CCEEEEEeCCeEEEEECC
Confidence 222221222335555553 366777778899999744
No 118
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=25.81 E-value=3.9e+02 Score=24.49 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=69.7
Q ss_pred EEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeC--CCeEEEEecCCcEEEEecCCCC
Q 009463 150 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFG 227 (534)
Q Consensus 150 is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G--~~h~~~Lt~~G~vy~wG~n~~G 227 (534)
.+....+.+++|++|++|..-...- -.+...-......++..++.+|+.+... ..+.+++|++|.+.-.--.++-
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~el---p~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~ 116 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITL---PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 116 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGS---CCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHC---CCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhc
Confidence 4456778999999999999875432 1111111111123333356788888763 4457889999988777654441
Q ss_pred CcccCCCCeeeeecCeEeccC-CCceEEEE--E-ecCceEEEEEcCCcEEEEeeCCCCCCCC
Q 009463 228 EAEYGVQGTKLVTSPQLVESL-KNIFVVQA--A-IGNFFTAVLSREGRVYTFSWGNDARLGH 285 (534)
Q Consensus 228 qlG~g~~~~~~~~~P~~v~~l-~~~~I~~V--a-~G~~hs~~Lt~~G~vy~wG~n~~gqlG~ 285 (534)
....+ .. .+-.+ .+..++.+ . .+..+.+++|++|.+..+-.+.--.+|.
T Consensus 117 ~~~r~---G~------~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 117 ARNRA---GK------ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCSTT---CE------ECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred ccCcC---ce------EEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 11110 00 01111 11223322 2 3667899999999999887665444433
No 119
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=24.42 E-value=3.9e+02 Score=24.04 Aligned_cols=77 Identities=4% Similarity=-0.065 Sum_probs=41.7
Q ss_pred cceEEEcC----CCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCC----CeEEEEecCCc
Q 009463 146 ENSQAIAG----PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA----GRTMLISDAGQ 217 (534)
Q Consensus 146 ~i~~is~G----~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~----~h~~~Lt~~G~ 217 (534)
.|..++.- ....+....||.|..|-......... .....+..........|..++... ...+....||.
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 135 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS---GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS---SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc---ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence 45555543 23445556889999997654221110 001111111112234677777664 45666778999
Q ss_pred EEEEecCC
Q 009463 218 VYAFGKDS 225 (534)
Q Consensus 218 vy~wG~n~ 225 (534)
|+.|-...
T Consensus 136 v~iwd~~~ 143 (351)
T 3f3f_A 136 LRLYDALE 143 (351)
T ss_dssp EEEEECSS
T ss_pred EEEecCCC
Confidence 99997543
No 120
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=22.57 E-value=2.4e+02 Score=26.74 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=12.6
Q ss_pred CceEEEEEcCCcEEEEee
Q 009463 260 NFFTAVLSREGRVYTFSW 277 (534)
Q Consensus 260 ~~hs~~Lt~~G~vy~wG~ 277 (534)
..|+++. .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3466666 7889999983
No 121
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=22.43 E-value=4.5e+02 Score=23.98 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=12.3
Q ss_pred CcEEEEEecCCcEEEEEC
Q 009463 370 AWHAAVVGQDGRVCTWGW 387 (534)
Q Consensus 370 ~~hs~alt~~G~vy~wG~ 387 (534)
..|++++. ++++|.+|-
T Consensus 93 ~~~~~~~~-~~~iyv~GG 109 (306)
T 3ii7_A 93 DSLAACAA-EGKIYTSGG 109 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEECC
Confidence 45666654 789999985
No 122
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=21.94 E-value=4.7e+02 Score=24.11 Aligned_cols=145 Identities=16% Similarity=0.167 Sum_probs=71.3
Q ss_pred eEEEEEecC--ceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEE
Q 009463 252 FVVQAAIGN--FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 329 (534)
Q Consensus 252 ~I~~Va~G~--~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy 329 (534)
.|..++... ...+.-..+|.|+.|-.... ++ ...+. ....+|..++...+..++++...|| .|.
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~~----------~~~~~--~h~~~v~~l~~spd~~~l~s~s~dg-~i~ 231 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATG-KL----------LHTLE--GHAMPIRSLTFSPDSQLLVTASDDG-YIK 231 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT-EE----------EEEEC--CCSSCCCEEEECTTSCEEEEECTTS-CEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cE----------EEEEc--ccCCceeEEEEcCCCCEEEEEcCCC-eEE
Confidence 355555432 34444567888888843211 00 00111 1223456666555444455554577 888
Q ss_pred EeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECCCCCccCCCCCCCccccEEe
Q 009463 330 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV 407 (534)
Q Consensus 330 ~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v 407 (534)
.|-.... ..+..+......|..++-. ..+.+.-..||.|..|-.... +.+
T Consensus 232 iwd~~~~--------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--------------~~~ 283 (321)
T 3ow8_A 232 IYDVQHA--------------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--------------TCV 283 (321)
T ss_dssp EEETTTC--------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEE
T ss_pred EEECCCc--------------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------EEE
Confidence 8853211 1112222223345555443 446666678999999965321 111
Q ss_pred ccc--CCCcEEEEEecC--ceEEEEEeCCCEEEEe
Q 009463 408 QAL--NDVKAIHVATGD--YTTFVVSEDGDVYSFG 438 (534)
Q Consensus 408 ~~l--~~~~i~~Va~G~--~~t~alt~~G~vy~wG 438 (534)
..+ ....|..|+-.. ...+....||.|..|-
T Consensus 284 ~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 111 122455555432 3344456778888884
No 123
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=21.53 E-value=5.3e+02 Score=24.57 Aligned_cols=229 Identities=10% Similarity=-0.040 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeecee-------eccCCCCcEEEEEeCCCe---EEEEecCCcEEEEe
Q 009463 153 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRP-------IRSLQGIRIIQAAAGAGR---TMLISDAGQVYAFG 222 (534)
Q Consensus 153 G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~-------v~~~~~~~I~~Is~G~~h---~~~Lt~~G~vy~wG 222 (534)
+.-.++....+|+.++.| ..|.+-.=+......+.. ........|..++..... .+.-..||.|..|-
T Consensus 178 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp SCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred cceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Q ss_pred cCCCCC----cccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccc
Q 009463 223 KDSFGE----AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 298 (534)
Q Consensus 223 ~n~~Gq----lG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 298 (534)
...... +-.-.........+..........-...+-...+.+.-+. |.|..|-....++.-............+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Q ss_pred cccCCcCEEE---EEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeee------------------cc
Q 009463 299 GTLENIPVVQ---IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQ------------------FQ 357 (534)
Q Consensus 299 ~~~~~~~i~~---Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~------------------~~ 357 (534)
.......+.. ++...+...+++...|| .|+.|-......+-.........+..+.. ..
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNN-FFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTT-EEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred ccccccccccceEEEECCCCCEEEEeccCC-EEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccc
Q ss_pred cCCCCcEEEEeC-CcEEEEEecCCcEEEE
Q 009463 358 LLNLQPVVVAAG-AWHAAVVGQDGRVCTW 385 (534)
Q Consensus 358 ~~~~~i~~Ia~G-~~hs~alt~~G~vy~w 385 (534)
....+|..++-. ....+|+...+.+|.|
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSCEEEE
T ss_pred ccCCceeEEEECCCCCEEEEEecceeeee
No 124
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.44 E-value=5.7e+02 Score=24.87 Aligned_cols=18 Identities=6% Similarity=-0.023 Sum_probs=13.1
Q ss_pred ceEEEEEeCCCEEEEeCC
Q 009463 423 YTTFVVSEDGDVYSFGCG 440 (534)
Q Consensus 423 ~~t~alt~~G~vy~wG~n 440 (534)
-+.++++.+|.||+-..+
T Consensus 382 P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 382 PYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp EEEEEECSSSEEEEEEST
T ss_pred ceEEEEcCCCCEEEEECC
Confidence 456788888888886644
No 125
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=21.33 E-value=4.9e+02 Score=24.09 Aligned_cols=98 Identities=7% Similarity=-0.089 Sum_probs=50.5
Q ss_pred EEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCC
Q 009463 263 TAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHG 342 (534)
Q Consensus 263 s~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g 342 (534)
.+.-..||.|..|-...... ...+. .....|..++...+..++++...|| .|..|=....
T Consensus 157 l~s~s~d~~i~~wd~~~~~~-----------~~~~~--~h~~~v~~~~~~~~~~~l~sg~~d~-~v~~wd~~~~------ 216 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQ-----------TTTFT--GHTGDVMSLSLAPDTRLFVSGACDA-SAKLWDVREG------ 216 (340)
T ss_dssp EEEEETTSCEEEEETTTTEE-----------EEEEC--CCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTC------
T ss_pred EEEEECCCcEEEEECCCCcE-----------EEEEc--CCCCceEEEEECCCCCEEEEEeCCC-cEEEEECCCC------
Confidence 44556788888884322110 00111 1223467776665555555555577 8888843211
Q ss_pred CCCCCcCceeeeecccCCCCcEEEEeC--CcEEEEEecCCcEEEEECC
Q 009463 343 SRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWG 388 (534)
Q Consensus 343 ~~~~~~~p~~i~~~~~~~~~i~~Ia~G--~~hs~alt~~G~vy~wG~n 388 (534)
..+..+......|..++.. ....+.-..||.|..|-..
T Consensus 217 --------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 217 --------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp --------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred --------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 1122222223345455443 3455556778999999653
No 126
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=20.36 E-value=5.4e+02 Score=24.17 Aligned_cols=122 Identities=10% Similarity=-0.050 Sum_probs=53.1
Q ss_pred eEEEEEecCc--eEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecce-eEEEeeeeCCCCeE
Q 009463 252 FVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC-YLLALACQPSGMAV 328 (534)
Q Consensus 252 ~I~~Va~G~~--hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~~-~~~~lt~~~~G~~v 328 (534)
.|..++.... ..+.-..+|.|..|-...... + ......+. .....|..++.... ..++++...+| .|
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---~----~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg-~v 138 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANN---A----INSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNG-EI 138 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTS---C----CCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSS-CE
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccc---c----ccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCC-eE
Confidence 4666665333 344456789999885433100 0 00011111 12234555555432 22333333477 88
Q ss_pred EEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC---CcEEEEEecCCcEEEEECC
Q 009463 329 YSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGWG 388 (534)
Q Consensus 329 y~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G---~~hs~alt~~G~vy~wG~n 388 (534)
+.|-........ ....+..+.........|..++.. ....+.-..+|.|+.|-..
T Consensus 139 ~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 139 FIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp EBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 888543221000 000111111111122234445443 3344445678999999753
Done!