BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009464
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
Dehydratase- Shikimate Dehydrogenase In Complex With
Tartrate And Shikimate
Length = 523
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/516 (72%), Positives = 430/516 (83%), Gaps = 5/516 (0%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
KNP+LIC P+M +S+DKMV++ KA+ GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF SI GKKP K KVI
Sbjct: 62 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVSHVPII 200
VSSHNYQ TPSVEDL LVARIQ +GADIVK ATTA+DI DVAR+F IT +QV P I
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQV---PTI 178
Query: 201 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFG 260
GLVMGERGL+SRILC+KFGG+LTFGTL++ VSAPGQPTIKDLLDLYNFR++GPDTKV+G
Sbjct: 179 GLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYG 238
Query: 261 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEA 320
IIGKPV HSKSPI++N+AFKSV FNGV+VHLLVD++ F Q YSS+DFAGFSCTIPHKEA
Sbjct: 239 IIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEA 298
Query: 321 AVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGV 378
A++CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR G +
Sbjct: 299 ALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSS 358
Query: 379 SSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALSLADLE 438
SS LA K VVI +VVIANRTY+RA ELAE +GG ALSL DL+
Sbjct: 359 SSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLD 418
Query: 439 NFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGAT 498
N++PEDGM+LANTTS+GMQP V+ETPI K AL HYALVFDAVYTP+ITRLLREAEESGA
Sbjct: 419 NYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAI 478
Query: 499 IVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAKY 534
VSG EMF+ QAYEQ+E FTGLPAPKEL+ +IM+KY
Sbjct: 479 TVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIMSKY 514
>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
Length = 523
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/516 (72%), Positives = 429/516 (83%), Gaps = 5/516 (0%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
KNP+LIC P+M +S+DKMV++ KA+ GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF SI GKKP K KVI
Sbjct: 62 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVSHVPII 200
VSSHNYQ TPSVEDL LVARIQ +GADIVK ATTA+DI DVAR+F IT +QV P I
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQV---PTI 178
Query: 201 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFG 260
GLVMGERGL+SRILC+KFGG+LTFGTL++ VSAPGQPTIKDLLDLYNFR++GPDTKV+G
Sbjct: 179 GLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYG 238
Query: 261 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEA 320
IIGKPV HSKSPI++N+AFKSV FNGV+VHLLVD++ F Q YSS+DFAGFSCTIPHKEA
Sbjct: 239 IIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEA 298
Query: 321 AVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGV 378
A++ CDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR G +
Sbjct: 299 ALQXCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSS 358
Query: 379 SSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALSLADLE 438
SS LA K VVI +VVIANRTY+RA ELAE +GG ALSL DL+
Sbjct: 359 SSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLD 418
Query: 439 NFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGAT 498
N++PEDGM+LANTTS+GMQP V+ETPI K AL HYALVFDAVYTP+ITRLLREAEESGA
Sbjct: 419 NYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAI 478
Query: 499 IVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAKY 534
VSG EMF+ QAYEQ+E FTGLPAPKEL+ +IM+KY
Sbjct: 479 TVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIMSKY 514
>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
pdb|1NVT|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
Length = 287
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 143/284 (50%), Gaps = 27/284 (9%)
Query: 256 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFV--HLLVDDIAKFFQTYSSNDFAGFSC 313
TKV G+IG PV HS SPI++N AFK G N V+V +L +++ + GF+
Sbjct: 11 TKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNV 70
Query: 314 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 373
TIPHK +K DE+D A+ IGAVN I + DGK GYNTD +GA A+E+ + GR+
Sbjct: 71 TIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEI-GRVK 127
Query: 374 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVG----- 428
+VI ++IANRT ++A LA+ +
Sbjct: 128 DKN-----------IVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNK 176
Query: 429 --GHALSLADLENFNPEDGM-ILANTTSIGMQPKVDETPIPK-HALGHYALVFDAVYTPK 484
G + + L+ DG+ I+ N T IGM P +D PI K L +V D +Y P
Sbjct: 177 KFGEEVKFSGLD--VDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPL 234
Query: 485 ITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQ 528
T LL+EA++ A ++GL M I Q ++ +TG+ E+ +
Sbjct: 235 ETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMK 278
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 19/278 (6%)
Query: 248 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSS 305
N G KV+G+IG PV HS SP+++N+AF +G + V+ + +
Sbjct: 15 NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74
Query: 306 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 365
AG + TIPHK A + DEVD A+ IGAVN II +DG+L GYNTD +G + A+E
Sbjct: 75 LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTII--NNDGRLVGYNTDGLGYVQALE 132
Query: 366 DGLRGRLNVSGGVSSALAGK-LFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRAREL- 423
+ +N++ L GK + V+ R+ +ANRT ++A L
Sbjct: 133 E----EMNIT------LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV 182
Query: 424 --AETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVY 481
+ SLA+ E E +I+ NTTS+GM P+V+ P+ L +V D +Y
Sbjct: 183 REGDERRSAYFSLAEAETRLAEYDIII-NTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY 241
Query: 482 TPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 519
P T+ L+EA+ GA + +G+ M + Q +E++TG
Sbjct: 242 NPLETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTG 279
>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis
pdb|3DOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis Complexed With Shikimate
Length = 277
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 136/272 (50%), Gaps = 34/272 (12%)
Query: 259 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF--VHLLVDDIAKFFQTYSSNDFAGFSCTIP 316
F +IG P+ HS SP++++ F+S+ + +++ V+ + S GF+ TIP
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 317 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLN 373
HKE + D+++ AKS+GAVN ++ + DGK GYNTD YV + I +G+
Sbjct: 63 HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 120
Query: 374 V---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 430
+ +GG S +A +L+ ++ + +ANRT R + +
Sbjct: 121 LILGAGGASKGIANELYKIVRPT----------------LTVANRTMSRFNNWSLNINKI 164
Query: 431 ALSLAD--LENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRL 488
LS A+ L+ F+ I+ NTT GM D I + L + LV D VY P T +
Sbjct: 165 NLSHAESHLDEFD-----IIINTTPAGMNGNTDSV-ISLNRLASHTLVSDIVYNPYKTPI 218
Query: 489 LREAEESGATIVSGLEMFIGQAYEQYERFTGL 520
L EAE+ G I +GL+MF+ Q E ++ +T L
Sbjct: 219 LIEAEQRGNPIYNGLDMFVHQGAESFKIWTNL 250
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 140/284 (49%), Gaps = 41/284 (14%)
Query: 252 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 309
+ T+++G+IG PV HS SP+ N + G N V++ + +++ K F+ + +
Sbjct: 2 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 310 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 369
G + T+P KE + D V+ AK IGAVN + + +GK +GYNTD++G + +++
Sbjct: 62 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK---- 115
Query: 370 GRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGG 429
+ + K +V+ +V + NRT ++A +LA+
Sbjct: 116 -------SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL 168
Query: 430 HALSLADLENFNPEDGM----ILANTTSIGMQPKVDETPIPKHALGHYAL------VFDA 479
++ +PE+ + ++ NTTS+G++ DE P + +Y L V D
Sbjct: 169 EVVN-------SPEEVIDKVQVIVNTTSVGLK---DEDP----EIFNYDLIKKDHVVVDI 214
Query: 480 VYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
+Y K T+LL++A+E GA ++ GL M + Q E ++ + G P
Sbjct: 215 IY--KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 256
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 140/284 (49%), Gaps = 41/284 (14%)
Query: 252 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 309
+ T+++G+IG PV HS SP+ N + G N V++ + +++ K F+ + +
Sbjct: 8 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 310 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 369
G + T+P KE + D V+ AK IGAVN + + +GK +GYNTD++G + +++
Sbjct: 68 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK---- 121
Query: 370 GRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGG 429
+ + K +V+ +V + NRT ++A +LA+
Sbjct: 122 -------SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL 174
Query: 430 HALSLADLENFNPEDGM----ILANTTSIGMQPKVDETPIPKHALGHYAL------VFDA 479
++ +PE+ + ++ NTTS+G++ DE P + +Y L V D
Sbjct: 175 EVVN-------SPEEVIDKVQVIVNTTSVGLK---DEDP----EIFNYDLIKKDHVVVDI 220
Query: 480 VYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
+Y K T+LL++A+E GA ++ GL M + Q E ++ + G P
Sbjct: 221 IY--KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 262
>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|1WXD|B Chain B, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|2CY0|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2CY0|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2D5C|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2D5C|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2EV9|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
pdb|2EV9|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
Length = 263
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 121/268 (45%), Gaps = 31/268 (11%)
Query: 259 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 312
F ++G PV HS SP ++ A +S+G G + + L + + + F G +
Sbjct: 4 FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-----FRGVN 58
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 372
T+P KEAA+ D V A+ IGAVN ++ Q +G+LFG+NTD G + A++
Sbjct: 59 LTLPLKEAALAHLDWVSPEAQRIGAVNTVL--QVEGRLFGFNTDAPGFLEALK------- 109
Query: 373 NVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHAL 432
+GG+ L G +V+ V + NRT RA LAE G A+
Sbjct: 110 --AGGIP--LKGPA-LVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164
Query: 433 SLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREA 492
L + +L N T +G++ +P+P D VY P TR LREA
Sbjct: 165 PLE-----KAREARLLVNATRVGLE-DPSASPLPAELFPEEGAAVDLVYRPLWTRFLREA 218
Query: 493 EESGATIVSGLEMFIGQAYEQYERFTGL 520
+ G + +GL M Q + +TGL
Sbjct: 219 KAKGLKVQTGLPMLAWQGALAFRLWTGL 246
>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|B Chain B, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|C Chain C, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|D Chain D, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|E Chain E, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|F Chain F, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|G Chain G, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|H Chain H, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TNL|A Chain A, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|B Chain B, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|C Chain C, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|D Chain D, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad
Length = 315
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 135/296 (45%), Gaps = 38/296 (12%)
Query: 256 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSC 313
T++ G+I P+ HS SP ++NEAF +G + V++ V D + Q + + + G++
Sbjct: 37 TELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNV 96
Query: 314 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------G 367
++P+K K D++ A+ +GAVN ++ DG L G+ TD G + A+++ G
Sbjct: 97 SMPNKTNIHKYLDKLSPAAELVGAVNTVV--NDDGVLTGHITDGTGYMRALKEAGHDIIG 154
Query: 368 LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRT---YDRARELA 424
+ + +GG ++A+ + I NR Y A +
Sbjct: 155 KKMTICGAGGAATAIC----------------IQAALDGVKEISIFNRKDDFYANAEKTV 198
Query: 425 ETVG------GHALSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPK-HALGHYAL 475
E + + D E E + +I N T +GM+P ET +P L +
Sbjct: 199 EKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELI 258
Query: 476 VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 531
V D VY P TRLL AEE G ++GL M + Q + +E +T P + ++I+
Sbjct: 259 VSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEIL 314
>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|4H3D|A Chain A, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|B Chain B, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|C Chain C, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|D Chain D, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid
Length = 258
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVPT 80
ICVPI+G++ ++ + + + D++E R+D +N + +K ++ E +P
Sbjct: 22 ICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81
Query: 81 LFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEK-CK 138
LFT+R + EGG+ + + + G D IDVEL + E D + +K K
Sbjct: 82 LFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVK 141
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT--VHSQVSH 196
VI+S+H++ TP E++ + + R+Q GAD+ K A + DV + + T + +
Sbjct: 142 VIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYAD 201
Query: 197 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 249
PII + M G+ISR+ FG LTFG ++ VSAPGQ + K+L + N
Sbjct: 202 RPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252
>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
pdb|3T4E|B Chain B, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
Length = 312
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 134/291 (46%), Gaps = 30/291 (10%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 314
++ G++ P+ HS SP + N+A + G ++ VD+ A + + G +
Sbjct: 32 ELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVS 91
Query: 315 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAI-EDGLRGRLN 373
+P+K+ A + DE+ AK +GA+N I+ DG L GYNTD G I AI E G R
Sbjct: 92 MPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDMR-- 147
Query: 374 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXR-VVIANRT---YDRARELAETVGG 429
GK V++ + + + NR +++A A+ V
Sbjct: 148 ----------GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNE 197
Query: 430 HA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGH-YALVFDAV 480
+ LAD F IL N T +GM+P +E+ I +L LV + V
Sbjct: 198 NTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV 257
Query: 481 YTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 531
Y P +T+LL++A+++G + G M + Q EQ+E +TG P + +++M
Sbjct: 258 YNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVM 308
>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|E Chain E, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|F Chain F, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3OEX|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|4GFS|A Chain A, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GFS|B Chain B, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GUI|A Chain A, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUI|B Chain B, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUJ|A Chain A, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
pdb|4GUJ|B Chain B, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
Length = 255
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 21 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 80
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R EGG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 81 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 138
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVSH 196
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV Q +
Sbjct: 139 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 198
Query: 197 V--PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 243
PII + M + G+ISR+ FG TFG ++ SAPGQ ++ DL
Sbjct: 199 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 245
>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3L2I|B Chain B, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3LB0|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3LB0|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3S42|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
pdb|3S42|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
Length = 276
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R EGG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVSH 196
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV Q +
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 197 V--PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 243
PII + M + G+ISR+ FG TFG ++ SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 31/267 (11%)
Query: 252 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 309
M +T ++G+IG+ +GHS S ++ F+ VG G++ V + + + T+
Sbjct: 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 310 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG---AISAIED 366
G + TIP+K +K E+ A+ IGAVN + + S + G+NTDY+G +S
Sbjct: 61 GLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTDYIGFGKMLSKFRV 118
Query: 367 GLRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRAREL 423
++ + V SGG + A+ L + + R ++ E+
Sbjct: 119 EIKNNICVVLGSGGAARAVLQYL----------------KDNFAKDIYVVTRNPEKTSEI 162
Query: 424 AETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTP 483
+S +L N G ++ N T GM PK E+P+ K + ++ D +Y P
Sbjct: 163 YGEF--KVISYDELSNLK---GDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNP 217
Query: 484 KITRLLREAEESGATIVSGLEMFIGQA 510
T L+ A ESG V+GL M + QA
Sbjct: 218 VETLFLKYARESGVKAVNGLYMLVSQA 244
>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUF|B Chain B, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUG|A Chain A, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUG|B Chain B, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUH|A Chain A, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
pdb|4GUH|B Chain B, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
Length = 276
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 15/229 (6%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R GG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 102 --LFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVSH 196
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV Q +
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 197 V--PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 243
PII + M + G+ISR+ FG TFG ++ SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266
>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
pdb|3O1N|B Chain B, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
Length = 276
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 15/229 (6%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R EGG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVSH 196
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV Q +
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 197 V--PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 243
PII + M + G+ISR+ FG TFG ++ SAPG ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADL 266
>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|3NNT|B Chain B, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|4IUO|A Chain A, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
pdb|4IUO|B Chain B, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
Length = 276
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 15/229 (6%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R EGG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVSH 196
VI+S+H++ TP+ E++ + ++Q GADI A DV + TV Q +
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERY 219
Query: 197 V--PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 243
PII + M + G+ISR+ FG TFG ++ SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266
>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1QFE|B Chain B, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1L9W|A Chain A, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|B Chain B, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|C Chain C, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|D Chain D, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1GQN|A Chain A, Native 3-Dehydroquinase From Salmonella Typhi
Length = 252
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 15/239 (6%)
Query: 14 LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT-- 71
++ GM K I V +MG ++ + + + D++E R+D + +++ T
Sbjct: 10 IIGEGMPK----IIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAA 65
Query: 72 -LIKES--PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVA-REFN 126
+I+++ +P LFT+R EGG+ + + R A++ G D ID+EL +
Sbjct: 66 RVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVK 125
Query: 127 DSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVF 186
++ V++S+H++ TPS E++ + + ++QA GADI K A DV +
Sbjct: 126 ATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLL 185
Query: 187 QITVHSQVSHV--PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 243
T+ Q + P+I + M + G+ISR+ FG TFG ++ SAPGQ + DL
Sbjct: 186 TATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDL 242
>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1NPD|B Chain B, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1O9B|A Chain A, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
pdb|1O9B|B Chain B, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
Length = 288
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 38/294 (12%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 314
++ G+ P+ HS SP N+A + G + VD+ + + G +
Sbjct: 8 ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 67
Query: 315 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 371
P+K+ A + DE+ AK +GA+N I+ DG L GYNTD G I AI++ ++G+
Sbjct: 68 XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 125
Query: 372 LNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRT---YDRARELAE 425
V +GG S+A+ + + + + NR +D+A A+
Sbjct: 126 TXVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQ 169
Query: 426 TVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-V 476
V + LAD + F IL N T +G +P +E+ + +L H L V
Sbjct: 170 RVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGLLV 229
Query: 477 FDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKI 530
+ VY P T+LL++A+++G + G + Q EQ+ +TG P E +++
Sbjct: 230 TECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 283
>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
pdb|1VI2|B Chain B, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
Length = 300
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 38/294 (12%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 314
++ G+ P+ HS SP N+A + G + VD+ + + G +
Sbjct: 10 ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 69
Query: 315 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 371
P+K+ A + DE+ AK +GA+N I+ DG L GYNTD G I AI++ ++G+
Sbjct: 70 XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 127
Query: 372 LNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRT---YDRARELAE 425
V +GG S+A+ + + + + NR +D+A A+
Sbjct: 128 TXVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQ 171
Query: 426 TVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-V 476
V + LAD + F IL N T +G +P +E+ + +L H L V
Sbjct: 172 RVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGLLV 231
Query: 477 FDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKI 530
+ VY P T+LL++A+++G + G + Q EQ+ +TG P E +++
Sbjct: 232 TECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 285
>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Thermotoga Maritima
Length = 253
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 121/262 (46%), Gaps = 39/262 (14%)
Query: 259 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 312
F IIG PV HS SP LYNE FK G N + +I + + Y GF+
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 372
TIPHKE ++ + + A+ I AVNC+ R GK GYNTD+VG + ++E
Sbjct: 58 ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSLEGVEVKEP 110
Query: 373 NVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHAL 432
V G A ++ ++ + + NRT +RA+ L V
Sbjct: 111 VVVVGAGGAARAVIYALLQMGVKD-------------IWVVNRTIERAKALDFPV--KIF 155
Query: 433 SLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREA 492
SL L+ + L NTTS+GM K +E P+ +L + +LV+D +Y T L+ +A
Sbjct: 156 SLDQLDEV-VKKAKSLFNTTSVGM--KGEELPVSDDSLKNLSLVYDVIYFD--TPLVVKA 210
Query: 493 EESGAT-IVSGLEMFIGQAYEQ 513
+ G I+ G MF QA E
Sbjct: 211 RKLGVKHIIKGNLMFYYQAMEN 232
>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|B Chain B, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|C Chain C, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|D Chain D, Shikimate Dehydrogenase Aroe Complexed With Nadp+
Length = 271
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 126/292 (43%), Gaps = 41/292 (14%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCT 314
+ + + G P+ HSKSP ++ + + + + +L ++D + S G + T
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 315 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE------DGL 368
+P KE A DE+ A GAVN ++R + DG+L G NTD VG +S +E GL
Sbjct: 62 VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERLSFIRPGL 120
Query: 369 RGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE--- 425
R L +GG S + L + V I NRT RA ELA+
Sbjct: 121 RILLIGAGGASRGVLLPLLSL-----------------DCAVTITNRTVSRAEELAKLFA 163
Query: 426 -TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPK 484
T ALS+ +LE + ++ N TS G+ + P G Y +D Y
Sbjct: 164 HTGSIQALSMDELEGHEFD---LIINATSSGISGDIPAIPSSLIHPGIY--CYDMFYQKG 218
Query: 485 ITRLLREAEESGATI-VSGLEMFIGQAYEQYERFTGL-----PAPKELFQKI 530
T L E+ G+ GL M + QA + + G+ P K+L +++
Sbjct: 219 KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEEL 270
>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas
Putida
Length = 272
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 34/274 (12%)
Query: 259 FGIIGKPVGHSKSPILY-------NEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 311
+ +IG+P+ H+KSP+++ N+ + G +DD + S G
Sbjct: 5 YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGS-----LDDFEAQVLQFRSEGGKGM 59
Query: 312 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL--- 368
+ T P K A + D A+ A N + + DG++ N D +G + IE+ L
Sbjct: 60 NITAPFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGEP 117
Query: 369 -RGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETV 427
R R + G A+ G L + +VIANR +A L +
Sbjct: 118 LRNRRVLLLGAGGAVRGALLPFLQAGPS-------------ELVIANRDMAKALALRNEL 164
Query: 428 GGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITR 487
L ++ E + I+ N TS + D P+P LG AL ++ Y +T
Sbjct: 165 DHSRLRISRYEALEGQSFDIVVNATSASL--TADLPPLPADVLGEAALAYELAYGKGLTP 222
Query: 488 LLREAEESG-ATIVSGLEMFIGQAYEQYERFTGL 520
LR A E G A + G+ M + QA E + + G+
Sbjct: 223 FLRLAREQGQARLADGVGMLVEQAAEAFAWWRGV 256
>pdb|2OX1|A Chain A, Archaeal Dehydroquinase
pdb|2OX1|B Chain B, Archaeal Dehydroquinase
pdb|2OX1|C Chain C, Archaeal Dehydroquinase
pdb|2OX1|D Chain D, Archaeal Dehydroquinase
Length = 196
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 32/200 (16%)
Query: 47 ASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL 106
A AD+VE+R+D R + + ++ T R + +GG+++GDE ER++ ++
Sbjct: 16 AEKADVVELRIDLFDFSGARVDKEKIL---------TCRRVSDGGKFEGDERERIEKMKR 66
Query: 107 AME-LGADYIDVELQV---AREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARI 162
A + L DY+D+E + A +FN C++I S HN+ TP D S L +
Sbjct: 67 AFDSLNPDYVDLESDLPDSAFDFN----------CRIIESYHNFIRTP---DYSELKGIV 113
Query: 163 QASGADIVKFATTALDITDVARVFQITVHSQVSHVPIIGLVMGERGLISRILCAKFGGFL 222
+ D+VK AT DV + +I + + ++ +MGER +R+L A G
Sbjct: 114 EGRRGDLVKIATMGKSKRDVETIVRILTN----YDDVVAFLMGERFSFTRVLAAYLGSPF 169
Query: 223 TFGTLENGIVSAPGQPTIKD 242
+ + G APGQ ++ D
Sbjct: 170 IYCYV--GSPKAPGQISLDD 187
>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
pdb|2YR1|B Chain B, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
Length = 257
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 10/234 (4%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK-----ESPVPT 80
IC P++GE K++ + + DL+E R D + + +E + +P
Sbjct: 22 ICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPI 81
Query: 81 LFTYRPIWEGGQ-YDGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEKCK 138
LFT R EGGQ +E E ++ GA D +D EL D R +
Sbjct: 82 LFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECSVW 141
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVS-HV 197
++VS H + TP E L + + + GADI K A DV + Q T ++ +
Sbjct: 142 LVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARRELAI 201
Query: 198 PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ 251
P+I + MG G I+R+ FG +TF SAPGQ I D+ + + Q
Sbjct: 202 PLITMAMGGLGAITRLAGWLFGSAVTFAVGNQS--SAPGQIPIDDVRTVLSILQ 253
>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHG|B Chain B, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHH|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate
pdb|3PHI|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHI|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHJ|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
pdb|3PHJ|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
Length = 269
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 39/277 (14%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 312
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 371
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 372 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 430
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 431 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 486
F+ ++ N TS + +E P+ K L Y L +D Y +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-FLT 214
Query: 487 RLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
L A+E G +M I QA +E+F+ P
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIP 251
>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
pdb|1SFL|B Chain B, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
Length = 238
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 13/220 (5%)
Query: 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWE 89
S+++ ++ D++E+R+D +N + + + K + L TYR +
Sbjct: 15 SIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ 74
Query: 90 GG--QYDGDENERVDVLRLAMELGADYIDVELQVAREFNDS---IRGKKPEKCKVIVSSH 144
GG Q+ D + + LA G D ID+E Q + I + +VI+S H
Sbjct: 75 GGYGQFTNDSYLNL-ISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133
Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQ-ITVHSQVSHVPIIGLV 203
N++ TP +++L + ++Q + VK A + DV + Q ++ S ++G+
Sbjct: 134 NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGIS 193
Query: 204 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 243
M + GLISR FGG LT+G + G APGQ + DL
Sbjct: 194 MSKLGLISRTAQGVFGGALTYGCI--GEPQAPGQIDVTDL 231
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 49/282 (17%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDF---- 308
K FG+ G P+ HSKSP+++N F K +GF G + +L+ +++ N+F
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLP-----LESHIKNEFLHLG 58
Query: 309 -AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIED 366
+G + T+P KE A + CD++ +A ++N ++ + L GYNTD +G +S
Sbjct: 59 LSGANVTLPFKERAFQVCDKIKGIALECASINTLVLENDE--LVGYNTDALGFYLSLKHQ 116
Query: 367 GLRGRLNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE 425
+ L + SGG + ALA L +V + NR+ R + +
Sbjct: 117 NYQNALILGSGGSAKALACGL-----------------KKQGLKVSVLNRS-PRGLDFFQ 158
Query: 426 TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVY 481
+G F+ ++ N TS + +E P+ K L Y L +D Y
Sbjct: 159 RLGCDCFMEPPKSAFD-----LIINATSASLN---NELPLNKEVLKGYFKEAKLAYDLAY 210
Query: 482 TPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
+T L A+E G +M I QA +E+F+ P
Sbjct: 211 G-FLTPFLALAKELKIPFQDGKDMLIYQASLSFEKFSASQIP 251
>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
pdb|1SFJ|B Chain B, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
Length = 238
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 51 DLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWEGG--QYDGDENERVDVL 104
D++E+R+D +N + + + K + L TYR +GG Q+ D + +
Sbjct: 32 DVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNL-IS 90
Query: 105 RLAMELGADYIDVELQVAREFNDS---IRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVAR 161
LA G D ID+E Q + I + +VI+S HN++ TP +++L + +
Sbjct: 91 DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFK 150
Query: 162 IQASGADIVKFATTALDITDVARVFQ-ITVHSQVSHVPIIGLVMGERGLISRILCAKFGG 220
+Q + VK A + DV + Q ++ S ++G+ M + GLISR FGG
Sbjct: 151 MQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGG 210
Query: 221 FLTFGTLENGIVSAPGQPTIKDL 243
LT+G + G APGQ + DL
Sbjct: 211 ALTYGCI--GEPQAPGQIDVTDL 231
>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
pdb|4FOO|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
Length = 271
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 39/277 (14%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 312
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 371
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 372 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 430
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 431 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 486
F+ ++ N TS + +E P+ K L Y L +D Y +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-FLT 214
Query: 487 RLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
L A+E G +M I +A +E+F+ P
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYKAALSFEKFSASQIP 251
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 113/267 (42%), Gaps = 31/267 (11%)
Query: 256 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIA--KFFQTYSS-NDFAGFS 312
T++ I+G P+ KSP +N F N + + + + A F T + G
Sbjct: 6 TELVAIVGSPIAQVKSPQNFNTWFNHNNCNLAMLPIDLHEAALDSFADTLRGWQNLRGCV 65
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------ 366
T+P+K+A D + A ++G++N +IRR+ DG+L G N D G + A
Sbjct: 66 VTVPYKQALANRVDGLSERAAALGSIN-VIRRERDGRLLGDNVDGAGFLGAAHKHGFEPA 124
Query: 367 GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAET 426
G R + GGV SA+A L + + + + R + E
Sbjct: 125 GKRALVIGCGGVGSAIAYAL----------------AEAGIASITLCDPSTARMGAVCEL 168
Query: 427 VGGHALSLADLENFNP-EDGMILANTTSIGMQPKVDETPIPKHALGHY---ALVFDAVYT 482
+G L F+ ED ++AN + +GM + E P+ L LV D V +
Sbjct: 169 LGNGFPGLTVSTQFSGLEDFDLVANASPVGMGTRA-ELPLSAALLATLQPDTLVADVVTS 227
Query: 483 PKITRLLREAEESGATIVSGLEMFIGQ 509
P+IT LL A + G I +G EM Q
Sbjct: 228 PEITPLLNRARQVGCRIQTGPEMAFAQ 254
>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
pdb|4FPX|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
Length = 271
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 39/277 (14%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 312
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 371
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 372 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 430
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 431 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 486
F+ ++ N TS + +E P+ K L Y L +D Y +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-FLT 214
Query: 487 RLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
L A+E G +M I A +E+F+ P
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYNAALSFEKFSASQIP 251
>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FR5|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 122/277 (44%), Gaps = 39/277 (14%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 312
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 371
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 372 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 430
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 431 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 486
F+ ++ N TS + +E P+ K L Y L +D + + +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LASGFLT 214
Query: 487 RLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
L A+E G +M I QA +E+F+ P
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIP 251
>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 39/277 (14%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 312
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 371
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 372 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 430
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 431 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 486
F+ ++ N TS + +E P+ K L Y L +D Y +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-FLT 214
Query: 487 RLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
L A+E G +M I A +E+F+ P
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYAAALSFEKFSASQIP 251
>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FQ8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 39/277 (14%)
Query: 257 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 312
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 313 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 371
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 372 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 430
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 431 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 486
F+ ++ N TS + +E P+ K L Y L +D + +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LAAGFLT 214
Query: 487 RLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 523
L A+E G +M I QA +E+F+ P
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIP 251
>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|B Chain B, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|C Chain C, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|D Chain D, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
Length = 271
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 33/289 (11%)
Query: 252 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 310
+ DT++ + G+P + +N + +G N ++ DI + + G
Sbjct: 2 INKDTQLCMSLSGRPSNFGTT--FHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 311 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG 370
+ ++P KE + DE+ A++I +VN I+ +G L YNTDY+ + IE
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIV--NDNGFLRAYNTDYIAIVKLIEKYHLN 117
Query: 371 R-----LNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE 425
+ ++ SGG++ A+ ++ I R + LA
Sbjct: 118 KNAKVIVHGSGGMAKAVVAAF----------------KNSGFEKLKIYARNVKTGQYLAA 161
Query: 426 TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPI--PKHALGHYALVFDAVYTP 483
G ++ LEN + IL N TSIGM+ +E + PK + + ++ FD V P
Sbjct: 162 LYGYAYIN--SLEN---QQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMP 216
Query: 484 KITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMA 532
T +R A+ G +SG + + QA EQ+E +T EL + A
Sbjct: 217 VETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAAA 265
>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 281
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 29/289 (10%)
Query: 252 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 309
M + + G P+ HSKSP ++ + + ++ + VD + + + +
Sbjct: 4 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63
Query: 310 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIED 366
G + T+P KE A + D + A+ GAVN +++ DG++ G NTD G + A +
Sbjct: 64 GCNVTVPFKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQDLLAQQV 122
Query: 367 GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAET 426
L+G + G A G L ++ + + NRT+ +A +LAE
Sbjct: 123 LLKGATILLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAEL 169
Query: 427 VGGHALSLADLENFNPEDGMILANTTSI---GMQPKVDETPIPKHALGHYALVFDAVYTP 483
V + A + ++ N+TS G P +D P+ ++ +D +Y
Sbjct: 170 VAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGK 224
Query: 484 KITRLLREAEESG-ATIVSGLEMFIGQAYEQYERFTGL-PAPKELFQKI 530
T + A + G A + GL M +GQA E + + GL P K++ +++
Sbjct: 225 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 273
>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|B Chain B, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|C Chain C, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|D Chain D, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3SEF|A Chain A, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|B Chain B, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|C Chain C, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|D Chain D, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
Length = 302
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 29/289 (10%)
Query: 252 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 309
M + + G P+ HSKSP ++ + + ++ + VD + + + +
Sbjct: 25 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 84
Query: 310 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIED 366
G + T+P KE A + D + A+ GAVN +++ DG++ G NTD G + A +
Sbjct: 85 GCNVTVPFKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQDLLAQQV 143
Query: 367 GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAET 426
L+G + G A G L ++ + + NRT+ +A +LAE
Sbjct: 144 LLKGATILLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAEL 190
Query: 427 VGGHALSLADLENFNPEDGMILANTTSI---GMQPKVDETPIPKHALGHYALVFDAVYTP 483
V + A + ++ N+TS G P +D P+ ++ +D +Y
Sbjct: 191 VAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGK 245
Query: 484 KITRLLREAEESG-ATIVSGLEMFIGQAYEQYERFTGL-PAPKELFQKI 530
T + A + G A + GL M +GQA E + + GL P K++ +++
Sbjct: 246 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 294
>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 275
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 125/282 (44%), Gaps = 29/282 (10%)
Query: 259 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFAGFSCTIP 316
+ + G P+ HSKSP ++ + + ++ + VD + + + + G + T+P
Sbjct: 5 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 64
Query: 317 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIEDGLRGRLN 373
KE A + D + A+ GAVN +++ DG++ G NTD G + A + L+G
Sbjct: 65 FKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATI 123
Query: 374 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALS 433
+ G A G L ++ + + NRT+ +A +LAE V +
Sbjct: 124 LLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAELVAAYGEV 170
Query: 434 LADLENFNPEDGMILANTTSI---GMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLR 490
A + ++ N+TS G P +D P+ ++ +D +Y T +
Sbjct: 171 KAQAFEQLKQSYDVIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGKGYTVFNQ 225
Query: 491 EAEESG-ATIVSGLEMFIGQAYEQYERFTGL-PAPKELFQKI 530
A + G A + GL M +GQA E + + GL P K++ +++
Sbjct: 226 WARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 267
>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2EGZ|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
Length = 219
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 23/228 (10%)
Query: 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN--FNPRENIKTLIKESPVPTLF 82
LI VP+ + + ++ KA GAD+VE+R+D + N + + + T+
Sbjct: 2 LIAVPLDDTNFSE---NLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58
Query: 83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ----VAREFNDSIRGKKPEKCK 138
T R EGG+ + E + L +DY D+EL + + +N + K K
Sbjct: 59 TIRSPEEGGREVKNREELFEELSPL----SDYTDIELSSRGLLVKLYNITKEAGK----K 110
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVSHVP 198
+I+S HN++ TP + ++ G I K A A DVAR+ I+ QV
Sbjct: 111 LIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYEDVARLLCIS--RQVEGEK 167
Query: 199 IIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL 246
I+ + MG+ G ISR+ FG +T+ +LE APGQ ++++++L
Sbjct: 168 IL-ISMGDYGKISRLAGYVFGSVITYCSLEKAF--APGQIPLEEMVEL 212
>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Nad
pdb|3JYP|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Quinate And Nadh
pdb|3JYQ|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Shikimate And Nadh
Length = 283
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 111/281 (39%), Gaps = 29/281 (10%)
Query: 255 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 307
D+ + G+IG+ + S++P ++ + G V+ + D+
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 308 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 367
F G + T P+K+A + DEV A +GAVN ++ + G G+NTD G +E+G
Sbjct: 63 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVI-DATGHTTGHNTDVSGFGRGMEEG 121
Query: 368 LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE-- 425
L +A + V ++ +A+ RA+ LA+
Sbjct: 122 L----------PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI 171
Query: 426 --TVGGHALSLADLENFN----PEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDA 479
VG A+ D DG++ N T +GM P T L V D
Sbjct: 172 NNAVGREAVVGVDARGIEDVIAAADGVV--NATPMGM-PAHPGTAFDVSCLTKDHWVGDV 228
Query: 480 VYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 520
VY P T LL+ A G + G M I QA + + FTGL
Sbjct: 229 VYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGL 269
>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From
Corynebacterium Glutamicum
Length = 302
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 113/287 (39%), Gaps = 29/287 (10%)
Query: 249 FRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQ 301
F+ D+ + G+IG+ + S++P ++ + G V+ + D+
Sbjct: 16 FQGAMNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLD 75
Query: 302 TYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAI 361
F G + T P+K+A + DEV A +GAVN ++ + G G+NTD G
Sbjct: 76 AALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVI-DATGHTTGHNTDVSGFG 134
Query: 362 SAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRAR 421
+E+GL +A + V ++ +A+ RA+
Sbjct: 135 RGMEEGL----------PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQ 184
Query: 422 ELAE----TVGGHALSLADLENFN----PEDGMILANTTSIGMQPKVDETPIPKHALGHY 473
LA+ VG A+ D DG++ N T +GM P T L
Sbjct: 185 ALADVINNAVGREAVVGVDARGIEDVIAAADGVV--NATPMGM-PAHPGTAFDVSCLTKD 241
Query: 474 ALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 520
V D VY P T LL+ A G + G M I QA + + FTGL
Sbjct: 242 HWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGL 288
>pdb|3L9C|A Chain A, The Crystal Structure Of Smu.777 From Streptococcus Mutans
Ua159
pdb|3L9C|B Chain B, The Crystal Structure Of Smu.777 From Streptococcus Mutans
Ua159
Length = 259
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 35/254 (13%)
Query: 7 LVASGSKLVS--GG--MRKNPTLICVPIMGESVDKM-VVDMGKANASGADLVEIRLDGLK 61
LV GS + S GG M + I VP+M +++++ +D+ + +++ D++E R D L
Sbjct: 14 LVPRGSHMASMTGGQQMGRGSMKIVVPVMPQNIEEANQLDLTRIDST--DIIEWRADYLV 71
Query: 62 NFNPRENIKTLI-----KESPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYI 115
+++I T+ K S +FT R EGG + + ++R +A DYI
Sbjct: 72 ----KDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYI 127
Query: 116 DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175
D E R+ + + + +I+S HN++ TP E+L + + + A +VK A
Sbjct: 128 DFEYFSYRDVLEEMY----DFSNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVM 181
Query: 176 ------ALDITDVARVFQITVHSQVSHVPIIGLVMGERGLISRILCAKFGGFLTFGTLEN 229
LD+ + R F+ +Q + + M + G ISR+ G TF +LE
Sbjct: 182 PKNEQDVLDLMNYTRGFKTLNPNQ----EYVTMSMSKLGRISRLAADLIGSSWTFASLEQ 237
Query: 230 GIVSAPGQPTIKDL 243
SAPGQ ++ D+
Sbjct: 238 E--SAPGQISLADM 249
>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P74|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P77|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) From
Haemophilus Influenzae
Length = 272
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 25/271 (9%)
Query: 258 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCTI 315
++ + G P+ SKSP++ N+ ++ L +D + + G + T
Sbjct: 3 LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 316 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE--DGLRGRLN 373
P KE A + DE AK A N + ++ DGKL+ NTD +G ++ ++ + LR +
Sbjct: 63 PFKERAYQLADEYSQRAKLAEACNTL-KKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQH 121
Query: 374 VS-GGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHA- 431
V G A G L ++ +V+ANRT+ + +ELAE +
Sbjct: 122 VLILGAGGATKGVLLPLLQAQQ--------------NIVLANRTFSKTKELAERFQPYGN 167
Query: 432 LSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKI-TRLLR 490
+ +++ + ++ N TS G+ LG + +D Y T +
Sbjct: 168 IQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLG--SAFYDMQYAKGTDTPFIA 225
Query: 491 EAEESGATIVS-GLEMFIGQAYEQYERFTGL 520
+ G T VS G M + QA + + G+
Sbjct: 226 LCKSLGLTNVSDGFGMLVAQAAHSFHLWRGV 256
>pdb|2OCZ|A Chain A, The Structure Of A Putative 3-dehydroquinate Dehydratase
From Streptococcus Pyogenes
Length = 231
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 31/234 (13%)
Query: 22 NPTLICVPIMGESVDK-MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI-----KE 75
N I P+ D+ +D+ K +L+E R D F P++ I + K
Sbjct: 2 NAXRIVAPVXPRHFDEAQAIDISKY--EDVNLIEWRAD----FLPKDEIVAVAPAIFEKF 55
Query: 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKP 134
+ +FT R + EGG E VD+++ + DYID E + S+ +
Sbjct: 56 AGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHK----SVFQEXL 111
Query: 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT------ALDITDVARVFQI 188
+ +I+S HN++ TP E+L + +VK A LD+ + R F+
Sbjct: 112 DFPNLILSYHNFEETP--ENLXEAFSEXTKLAPRVVKIAVXPQSEQDVLDLXNYTRGFKT 169
Query: 189 TVHSQVSHVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD 242
Q + G+ G +SR G T+ +L++ VS PGQ T+ D
Sbjct: 170 LNPEQ----EFATISXGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLND 217
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 410 VVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS 453
V++ANRTY+RA ELA +GG A+ +L + ++++ T +
Sbjct: 194 VLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 211 SRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKV-FGIIGKPVGHS 269
+RI A F + L NGI APG+P I DLL N ++ PD++ G P+G
Sbjct: 223 TRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWEN--RVIPDSEHDLGFDVDPMGWK 280
Query: 270 -----KSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFA 309
+ P+L + + + + L D + +Q + D+A
Sbjct: 281 VVLSPRVPVLAKASLQPTYAD--LLSSLQDQLPSSYQKPADFDWA 323
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 211 SRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKV-FGIIGKPVGHS 269
+RI A F + L NGI APG+P I DLL N ++ PD++ G P+G
Sbjct: 194 TRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWEN--RVIPDSEHDLGFDVDPMGWK 251
Query: 270 -----KSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFA 309
+ P+L + + + + L D + +Q + D+A
Sbjct: 252 VVLSPRVPVLAKASLQPTYAD--LLSSLQDQLPSSYQKPADFDWA 294
>pdb|2F8Q|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2F8Q|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 353
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 94 DGDENERVDVLRLAMEL---GADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP 150
DG NER LR ++ G +YI V + AR++ E K+ ++ +N + TP
Sbjct: 152 DGTPNERG--LRESVWYQITGDEYIRVAFETARKY-------AGEDAKLFINDYNTEVTP 202
Query: 151 SVEDLSNLVARIQASGADI 169
+ L NLV + A G I
Sbjct: 203 KRDHLYNLVQDLLADGVPI 221
>pdb|2FGL|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2FGL|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 354
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 94 DGDENERVDVLRLAMEL---GADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP 150
DG NER LR ++ G +YI V + AR++ E K+ ++ +N + TP
Sbjct: 153 DGTPNERG--LRESVWYQITGDEYIRVAFETARKY-------AGEDAKLFINDYNTEVTP 203
Query: 151 SVEDLSNLVARIQASGADI 169
+ L NLV + A G I
Sbjct: 204 KRDHLYNLVQDLLADGVPI 222
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 211 SRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF------RQMGPDTKVFGIIGK 264
+RI A F + L NGI APG+P I DLL N +G D G K
Sbjct: 194 TRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGGDVDPMGW--K 251
Query: 265 PVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFA 309
V + P+L + + + + L D + +Q + D+A
Sbjct: 252 VVLSPRVPVLAKASLQPTYAD--LLSSLQDQLPSSYQKPADFDWA 294
>pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|B Chain B, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|C Chain C, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|D Chain D, Xylose Isomerase From Bacillus Stearothermophilus
Length = 440
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 280 KSVGFNGVFV----------HLLVDDIAK---FFQTYSSNDFAGFSCTIPHKEAAVKCCD 326
K +GF+G F+ H D+A F QTY D+ F+ H A +
Sbjct: 218 KEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFE 277
Query: 327 EVDTVAKSIGAVNCIIRRQSDGKLFGYNTD 356
VA+ G + + Q D L G++TD
Sbjct: 278 HELRVARIHGMLGSVDANQGD-MLLGWDTD 306
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6
pdb|3FG7|B Chain B, The Crystal Structure Of Villin Domain 6
Length = 398
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 87 IWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY 146
+W G GDE E ++ + + VE Q F ++ GK P + N
Sbjct: 220 LWCGKGCSGDEREMAKMVADTISRTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENL 279
Query: 147 QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV 194
TP + + SN R A+ +I F L+ D VF + V QV
Sbjct: 280 VITPRLFECSNKTGRFLAT--EIPDFNQDDLEEDD---VFLLDVWDQV 322
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 197 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDT 256
+PII GE L F L G + +G + G I + D ++ P++
Sbjct: 55 LPIISFTEGESSL-------SFSKALNIGIILSGGPAPGGHNVISGVFDA--IKKFNPNS 105
Query: 257 KVFGIIGKPVG 267
K+FG G P+G
Sbjct: 106 KLFGFKGGPLG 116
>pdb|2I76|A Chain A, Crystal Structure Of Protein Tm1727 From Thermotoga
Maritima
pdb|2I76|B Chain B, Crystal Structure Of Protein Tm1727 From Thermotoga
Maritima
Length = 276
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 412 IANRTYDRARELAETVGGHALSLADLENFN 441
I +R+ DRAR LAE GG A +L N
Sbjct: 30 ILSRSIDRARNLAEVYGGKAATLEKHPELN 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,376,675
Number of Sequences: 62578
Number of extensions: 654101
Number of successful extensions: 1682
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 64
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)