Query 009465
Match_columns 534
No_of_seqs 74 out of 76
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09737 Det1: De-etiolated pr 100.0 2E-154 5E-159 1205.4 38.2 393 121-534 1-407 (407)
2 KOG2558 Negative regulator of 100.0 7E-137 1E-141 1059.5 30.5 503 2-534 7-532 (532)
3 KOG2558 Negative regulator of 99.9 2.9E-23 6.4E-28 216.5 3.3 247 1-255 1-251 (532)
4 KOG0275 Conserved WD40 repeat- 92.5 0.6 1.3E-05 49.6 8.9 60 17-77 175-243 (508)
5 KOG1446 Histone H3 (Lys4) meth 89.3 1.8 3.9E-05 45.6 8.8 77 51-175 192-268 (311)
6 PRK11028 6-phosphogluconolacto 89.2 7 0.00015 39.8 12.9 84 123-228 130-219 (330)
7 PF05935 Arylsulfotrans: Aryls 87.2 6.1 0.00013 43.6 11.8 107 110-229 182-312 (477)
8 PF10282 Lactonase: Lactonase, 86.7 12 0.00027 39.0 13.2 129 53-224 198-332 (345)
9 TIGR03866 PQQ_ABC_repeats PQQ- 86.1 27 0.00058 33.5 14.3 80 124-230 212-293 (300)
10 TIGR03866 PQQ_ABC_repeats PQQ- 83.0 30 0.00065 33.2 13.2 85 123-228 161-249 (300)
11 PRK11028 6-phosphogluconolacto 80.9 49 0.0011 33.7 14.4 25 53-77 181-205 (330)
12 COG2706 3-carboxymuconate cycl 78.8 76 0.0016 34.3 15.2 168 45-224 143-331 (346)
13 PF10282 Lactonase: Lactonase, 73.9 57 0.0012 34.0 12.9 86 123-228 148-236 (345)
14 PF02239 Cytochrom_D1: Cytochr 73.2 21 0.00046 38.2 9.6 29 48-77 38-66 (369)
15 PF08662 eIF2A: Eukaryotic tra 71.0 18 0.00038 35.0 7.7 41 123-179 148-188 (194)
16 KOG2394 WD40 protein DMR-N9 [G 68.6 5.8 0.00013 44.8 4.2 54 53-136 297-350 (636)
17 PF08662 eIF2A: Eukaryotic tra 67.2 8.5 0.00018 37.2 4.7 38 41-78 138-180 (194)
18 KOG0315 G-protein beta subunit 66.6 13 0.00027 38.9 5.8 59 52-139 221-279 (311)
19 PF07676 PD40: WD40-like Beta 64.1 8.2 0.00018 27.4 3.0 25 50-74 12-38 (39)
20 PRK04922 tolB translocation pr 63.9 97 0.0021 33.4 12.4 32 125-174 342-373 (433)
21 PRK04792 tolB translocation pr 62.6 1E+02 0.0022 33.7 12.3 73 125-222 312-388 (448)
22 PRK02889 tolB translocation pr 61.0 99 0.0021 33.4 11.8 75 126-223 291-367 (427)
23 PRK03629 tolB translocation pr 60.9 1E+02 0.0022 33.4 11.8 28 50-77 290-317 (429)
24 KOG1063 RNA polymerase II elon 60.3 5.4 0.00012 46.1 2.1 34 35-77 569-602 (764)
25 COG0823 TolB Periplasmic compo 60.2 72 0.0016 35.1 10.7 139 28-216 218-359 (425)
26 TIGR02800 propeller_TolB tol-p 60.1 1.1E+02 0.0025 31.9 11.8 33 125-175 240-272 (417)
27 COG3490 Uncharacterized protei 59.9 23 0.0005 37.7 6.4 96 52-182 119-222 (366)
28 PRK04792 tolB translocation pr 59.7 1.5E+02 0.0032 32.4 13.0 75 125-223 268-345 (448)
29 TIGR02658 TTQ_MADH_Hv methylam 59.0 67 0.0014 34.6 9.9 82 54-179 53-146 (352)
30 PF02239 Cytochrom_D1: Cytochr 58.6 49 0.0011 35.5 8.9 25 53-77 84-108 (369)
31 PRK04922 tolB translocation pr 57.8 1.3E+02 0.0027 32.5 11.9 76 125-223 298-375 (433)
32 PRK03629 tolB translocation pr 54.9 1.8E+02 0.0039 31.5 12.5 32 124-173 292-323 (429)
33 KOG0266 WD40 repeat-containing 54.0 1.2E+02 0.0025 33.3 11.0 116 50-221 207-323 (456)
34 PRK00178 tolB translocation pr 53.4 1.6E+02 0.0034 31.4 11.7 27 50-76 202-230 (430)
35 PTZ00421 coronin; Provisional 47.8 4.1E+02 0.0089 29.8 14.2 56 160-221 147-203 (493)
36 TIGR02800 propeller_TolB tol-p 47.0 3E+02 0.0065 28.7 12.4 26 52-77 283-308 (417)
37 KOG2111 Uncharacterized conser 46.1 1E+02 0.0023 33.1 8.6 50 161-217 204-258 (346)
38 KOG0266 WD40 repeat-containing 44.9 2E+02 0.0044 31.4 11.1 120 48-216 290-410 (456)
39 PRK04043 tolB translocation pr 44.4 3.2E+02 0.0069 29.9 12.4 29 49-77 190-219 (419)
40 KOG2919 Guanine nucleotide-bin 43.8 1.7E+02 0.0036 31.9 9.7 144 44-225 45-197 (406)
41 PF12894 Apc4_WD40: Anaphase-p 43.8 32 0.0007 26.5 3.4 29 49-78 14-42 (47)
42 cd00200 WD40 WD40 domain, foun 39.8 2.9E+02 0.0063 25.1 14.0 25 52-77 15-39 (289)
43 KOG1539 WD repeat protein [Gen 39.1 77 0.0017 37.9 6.9 64 125-213 583-646 (910)
44 PF09783 Vac_ImportDeg: Vacuol 39.1 41 0.00088 33.0 4.1 63 307-369 82-161 (176)
45 PF09826 Beta_propel: Beta pro 38.7 1.4E+02 0.003 33.9 8.8 64 162-231 32-134 (521)
46 KOG0973 Histone transcription 37.3 35 0.00077 41.1 4.0 25 52-77 75-99 (942)
47 KOG0318 WD40 repeat stress pro 37.2 2.9E+02 0.0062 31.8 10.7 25 53-80 197-221 (603)
48 KOG0293 WD40 repeat-containing 37.1 24 0.00052 39.0 2.4 37 36-72 212-250 (519)
49 PF02897 Peptidase_S9_N: Proly 36.8 1.6E+02 0.0034 31.2 8.5 43 118-176 123-165 (414)
50 KOG2321 WD40 repeat protein [G 33.7 63 0.0014 37.2 5.1 93 43-139 47-155 (703)
51 PF10584 Proteasome_A_N: Prote 33.4 19 0.00041 24.3 0.6 11 50-60 4-14 (23)
52 PF10313 DUF2415: Uncharacteri 30.7 69 0.0015 24.7 3.3 26 52-77 6-33 (43)
53 PTZ00421 coronin; Provisional 30.5 8.2E+02 0.018 27.5 14.2 25 52-77 174-198 (493)
54 KOG2315 Predicted translation 29.5 64 0.0014 36.8 4.2 38 41-78 349-391 (566)
55 KOG2111 Uncharacterized conser 28.7 1.3E+02 0.0028 32.5 6.0 71 43-118 223-296 (346)
56 KOG0265 U5 snRNP-specific prot 27.3 3E+02 0.0065 29.6 8.4 88 49-187 50-138 (338)
57 PF13360 PQQ_2: PQQ-like domai 27.1 2.8E+02 0.0061 26.2 7.7 22 160-181 131-152 (238)
58 PRK02889 tolB translocation pr 26.5 1.4E+02 0.003 32.2 6.1 24 53-76 334-357 (427)
59 COG4946 Uncharacterized protei 25.5 1.1E+03 0.024 27.3 13.7 139 26-227 339-488 (668)
60 KOG2096 WD40 repeat protein [G 25.0 91 0.002 33.8 4.2 25 52-77 92-116 (420)
61 KOG0263 Transcription initiati 24.3 3.4E+02 0.0074 32.2 8.8 97 48-173 453-569 (707)
62 PF00400 WD40: WD domain, G-be 23.5 69 0.0015 21.9 2.1 22 52-74 17-38 (39)
63 KOG0283 WD40 repeat-containing 23.1 45 0.00098 39.2 1.7 16 53-68 274-289 (712)
64 PTZ00420 coronin; Provisional 21.6 1.3E+03 0.028 26.7 14.9 27 51-77 130-156 (568)
65 PF06433 Me-amine-dh_H: Methyl 21.5 3.6E+02 0.0079 29.3 7.9 107 106-241 79-190 (342)
66 COG2706 3-carboxymuconate cycl 20.9 89 0.0019 33.8 3.2 24 54-77 298-321 (346)
No 1
>PF09737 Det1: De-etiolated protein 1 Det1; InterPro: IPR019138 This entry represents Det1 family proteins []. Det1 (de-etiolated-1) is an essential negative regulator of plant light responses, and it is a component of the Arabidopsis CDD complex containing DDB1 and COP10 ubiquitin E2 variant. Mammalian Det1 forms stable DDD-E2 complexes, consisting of DDB1, DDA1 (DET1, DDB1 Associated 1), is a member of the UBE2E group of canonical ubiquitin conjugating enzymes and modulates Cul4A function [].
Probab=100.00 E-value=2.4e-154 Score=1205.42 Aligned_cols=393 Identities=51% Similarity=0.832 Sum_probs=368.4
Q ss_pred eeEEEEecCceEEEEEeecccCCCCCC-------CCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceee
Q 009465 121 KDFFLSMEGNQFGLFATSTAQIHDAPT-------TGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVF 193 (534)
Q Consensus 121 refsLft~dgryvivasa~~~~~~~~~-------~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~ 193 (534)
||||||||||||||||||++.++++++ |||+++|+|++|+||||||||+||+|||+++|++|+|+||||||||
T Consensus 1 refsLft~dgryvivasat~~~~~~~~~~~d~~~~~eav~~~~~lE~~tfhlVdL~~G~v~D~~~f~~D~I~LsHn~Gv~ 80 (407)
T PF09737_consen 1 REFSLFTEDGRYVIVASATAVPEDPPPRFYDIYRNNEAVSPVPPLEDYTFHLVDLHDGVVCDRRTFKNDKIHLSHNQGVY 80 (407)
T ss_pred CceEEEecCCCEEEEEecccCCCCCCchhhhhhhcCCCcCCCCChhhEEEEEEEccCCcEecceEecCcEEEeccCcceE
Confidence 899999999999999999987777676 9999999999999999999999999999999999999999999999
Q ss_pred eecceeeeeeecccEEEEEEEccCCeEEEeeeeCCccCcchHHHHhhccccchhcccccCCCCCCCCCCCCCCCcCCCCc
Q 009465 194 LYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDS 273 (534)
Q Consensus 194 L~~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG~fc~eDD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 273 (534)
||||||||||+||||||||||+++|+||+||+|||||+||||++++++.+... + ......+| ++++
T Consensus 81 Ly~dlLaILS~q~QtIhi~qI~~~G~fv~vr~IG~~c~eDDel~l~~~~~~~~--~-----------~~~~~~~~-~~~p 146 (407)
T PF09737_consen 81 LYGDLLAILSLQHQTIHIFQIRPDGRFVDVRTIGRFCREDDELFLSSQSQAHE--R-----------DQNNLDRP-FREP 146 (407)
T ss_pred EecchHHHHhhhheEEEEEEEcCCCEEEEeEEECCCcCCcHHHHhhccccccc--c-----------cccccccc-cccc
Confidence 99999999999999999999998999999999999999999999999876310 0 00112234 5778
Q ss_pred ccchhhHHHHHHHhcccccccCchHHHHHHHHHHHhhhHHHHhHhhhheehccccCeeeEeecccccccccCCC--CCce
Q 009465 274 FLSGIKQRLLSFIFQGMWNEETDQAMRVQSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVD--HHPA 351 (534)
Q Consensus 274 ~i~giKqRlLsfLyr~a~~~~~~~~~r~~~l~~~Fy~~F~~~~~L~MWKmQlLD~~hLLIk~~s~D~~~~r~~~--~~~s 351 (534)
+||||||||||||||+|+++++++++ ++| +||++||+|++||||||||||++||||||+++|++++|.++ +|++
T Consensus 147 ~i~~iKqRlLsfLyr~~~~~~~~~~~---~~r-~Fy~~F~~~~~L~MWKmQlLD~~hLLIky~s~D~~~~r~~d~~~~~s 222 (407)
T PF09737_consen 147 FINGIKQRLLSFLYRRAWRESSDPAD---RLR-RFYFNFDQYRSLRMWKMQLLDEDHLLIKYGSEDVVTLRVSDPNSQPS 222 (407)
T ss_pred cccchhHHhHHHHHhhhhhcCCcchh---hHH-HHHHHHHHHHHHHhhhhhhcchhheeeeeccccceeeccCCCCCCce
Confidence 99999999999999999987777744 456 99999999999999999999999999999999999999654 5999
Q ss_pred EEEEEeeecceEEEEEeCChHHHHHHHHHhhhhcccCCCCCcCcccccCCCccHHHHHHHH-----hhhccCCchHHHHH
Q 009465 352 FFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLR-----SIKNKGGSFSQFVK 426 (534)
Q Consensus 352 ~fvvYn~~t~eVl~vyen~S~eLl~l~e~f~d~f~~~~~~~~~~~f~~s~snn~~ar~~~~-----~~~ak~gg~~ea~k 426 (534)
|||||||+||||||||||+|+|||+|||||||+|||+++++++ +|+||+|||+|||++++ +++||+||.+||+|
T Consensus 223 ffvvYn~~t~eV~~vyen~S~eLl~l~e~f~d~f~~~~~~~~~-~f~~s~s~n~~a~~~~~~~k~~~~~a~~~~~~ea~k 301 (407)
T PF09737_consen 223 FFVVYNMETTEVLGVYENSSEELLKLFEQFCDHFRNAPLNSPN-NFRSSPSNNIYARPQHRRFKQTIVNARYGGHTEAVK 301 (407)
T ss_pred EEEEEeeccceEEEEEcCChHHHHHHHHHHHHHhhcccccccc-CCccCCCCChhhhHHHHHHHHHHhhcccccHHHHHH
Confidence 9999999999999999999999999999999999999999986 99999999999999988 46789999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCeeeEecCCCCeeeEEEecCCCCCCCCCccceeEEEE
Q 009465 427 KMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFL 506 (534)
Q Consensus 427 Rll~~lP~s~Qs~S~SPYlD~sLFsYDdk~IS~~eRpk~~~e~PIrF~sR~~p~~lkFki~~g~~~~~~~~~~rr~vaf~ 506 (534)
|||++||+|+||+|+|||||++||||||||||+|||||+|+|||||||+|++ |+|||||++|+.++++++++||+||||
T Consensus 302 Rll~~lP~s~Qs~s~SPYlD~~LFsYDdk~IS~~eRpk~~~~~PIrF~sR~~-~~lkFki~~g~~~~~~~~~~rr~vaf~ 380 (407)
T PF09737_consen 302 RLLAQLPISAQSYSSSPYLDLSLFSYDDKWISAIERPKPCGDHPIRFYSRDS-GLLKFKINAGARRGAAPSAARRLVAFT 380 (407)
T ss_pred HHHhhCCCCccccCCCcCcCchhcccccceecccccCCCCCCCCcEEEeecC-CeEEEEEecCCcCCCCCcCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred ecCCCceEEEEEeecccCCeeEEEeecC
Q 009465 507 FHPFLPLALSIQQTLFLQPSVVNIHFRR 534 (534)
Q Consensus 507 FHP~~PFaiSvq~~~~~~~~vvnfH~r~ 534 (534)
|||+|||||||||| +|++||||||+||
T Consensus 381 FHP~~PFaiSvq~~-~~~~~vvnfh~r~ 407 (407)
T PF09737_consen 381 FHPFEPFAISVQRT-FNQEYVVNFHFRH 407 (407)
T ss_pred cCCCCCeEEEEEee-cCCCcEEEEEecC
Confidence 99999999999999 9999999999997
No 2
>KOG2558 consensus Negative regulator of histones [Transcription]
Probab=100.00 E-value=6.9e-137 Score=1059.53 Aligned_cols=503 Identities=28% Similarity=0.339 Sum_probs=440.9
Q ss_pred CchhhHHHHHHhhhccCCCCCCcccc-------ccccccccCCCeeEeeecCCCceeeeeCCCCCeEEEeeCCCceEEEE
Q 009465 2 FRSINVTSRIFERQIRTPAPGTSVHC-------ARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVY 74 (534)
Q Consensus 2 ~~~~Nlv~rL~~Re~~~~~pgt~~~~-------~R~fYqni~P~~Tv~~Ve~P~~~lrKFTpDG~~LIaFS~dq~~L~vY 74 (534)
++++|++|.+|+||.|+. |++|++ +|-||.||.|++|+..+.+|+-++|||||||+.|++|++++.++-+|
T Consensus 7 ~~~~v~~rl~r~r~sg~~--v~~~~~~~~~l~~~~~~y~v~~p~~~~~~~t~~~~~lr~F~~~~~~l~~~~~~~~~~~~~ 84 (532)
T KOG2558|consen 7 LQSQNLVHLLQNRESGYT--VGQQPGRMPLLAYERLFYKCITPCLTIDSITIPPIYLRKFTPDGRKLLAFSQDQRSLLIY 84 (532)
T ss_pred hhHHHHHHHHhcCCCCCc--cccCcceeeecccccccceeeccccCchhhccCCcceeeecCCchhheeechhhhcceee
Confidence 468899999999998876 778877 45667777777777777777777888888888888888888888888
Q ss_pred eecCCCCCcCcccc----cCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceEEEEEeecccCCCCCC---
Q 009465 75 RPMWLSFSCKEEDC----CRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPT--- 147 (534)
Q Consensus 75 ry~g~~~~~~~~~~----~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgryvivasa~~~~~~~~~--- 147 (534)
.|-|.+ +.+.++. |.-....++..|+++|.+.+..+++..++.++++|+++|.+++.++++++. ..+.++.
T Consensus 85 ~~~~~~-~~~~~~l~~~~D~~s~~~~s~~~~~~~~li~~~~f~~~~t~~~~~~~~~t~~~h~~~s~s~~-~~p~~p~~~~ 162 (532)
T KOG2558|consen 85 SYGGSS-CAAVGELIRQADVGSGECFSSQDTILKSRIFERLFPTKETLNLCQGDFGLYYLHREFSVFLE-EGRYAMLAAM 162 (532)
T ss_pred ccCCcc-ccchhhhhhcccccceEEeehhHHHHHHHHHHHhcccchhhhccccccchhhhhhhccchhh-hCCCCCCCce
Confidence 887544 3332222 222345677888888888888888888888888888888888888888777 4444551
Q ss_pred -----CCCCCCC--CCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCeE
Q 009465 148 -----TGRAIQG--VPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNL 220 (534)
Q Consensus 148 -----~n~av~~--~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~f 220 (534)
+.+...+ .|+++++ +++++.|+.||.+.|++|+..|.||+|++++++.++|++++. |++++...|++
T Consensus 163 ~~v~~~~~~d~~v~~~~lfd~---~~a~~~g~fl~d~~l~~~~~rl~~~~~l~v~~~~h~I~~~~~---~v~~~~~~~~~ 236 (532)
T KOG2558|consen 163 TVVRGALPVDDYVRYPDLFDK---VDAFSYVFFLVDLKLGVVTDRLILPNDSIVIAHNHGISVFGS---TVMMMSRLHQC 236 (532)
T ss_pred EEEEeccccCCcccCchHHhh---hhhheeeEEEecceeeeeEEEEecccccEEEecCceeeeeeh---hhhhcccccce
Confidence 2233333 5588987 999999999999999999999999999999999999999996 99999999999
Q ss_pred EEeeeeCCccCcchHHHHhhccccchhcccccCCCCCCCCCCCCCCCcCCCCcccchhhHHHHHHHhcccccccCchHHH
Q 009465 221 VDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQAMR 300 (534)
Q Consensus 221 v~vrtIG~fc~eDD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~giKqRlLsfLyr~a~~~~~~~~~r 300 (534)
+.|++||++|+++|++..++...... +..+...++|..++++||||||||||||||+||++++++
T Consensus 237 v~v~~v~~~k~~qq~l~gs~~~d~~e------------~~~~~~~~~p~~~~~fi~~iKqRlLsfl~R~i~~~~s~~--- 301 (532)
T KOG2558|consen 237 VYVYWVNDGKFHQQETIGPRPRDFIE------------KATTDFDNLPATTVLFITHIKQRLLSFLYRKINDKSSNP--- 301 (532)
T ss_pred eEEEEecCCchhhhhccCCCCCchhh------------hcccccccCCccccchhhHHHHHHHHHHHHHHhccCCCh---
Confidence 99999999999999887766543221 223456678866699999999999999999999888888
Q ss_pred HHHHHHHHhhhHHHHhHhhhheehccccCeeeEeecccccccccCCC-CCceEEEEEeeecceEEEEEeCChHHHHHHHH
Q 009465 301 VQSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVD-HHPAFFAVYNMETTEVVAFYQNSAEELYFLFE 379 (534)
Q Consensus 301 ~~~l~~~Fy~~F~~~~~L~MWKmQlLD~~hLLIk~~s~D~~~~r~~~-~~~s~fvvYn~~t~eVl~vyen~S~eLl~l~e 379 (534)
+.+||+||+|||+|++||||||||||++||+|||+|+||++.|..| ++++|||||||+||||||||+|+|+|||+|||
T Consensus 302 -~~~kk~Fy~~F~~~~~limwKmqlld~~hL~IKy~s~dg~~tr~~d~s~~~ffvvYnm~tteVVavy~n~s~~LlqLfe 380 (532)
T KOG2558|consen 302 -TESKKSFYKNFEYIEHLIMWKMQLLDNEHLMIKYESPDGTDTRPMDTSPRRFFVVYNMTTTEVVAVYPNYSVNLLQLFE 380 (532)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcccceeEEEeeCCCCcccccCCCCCccEEEEEEcceeEEEEEcccchHHHHHHHH
Confidence 5677799999999999999999999999999999999999999887 79999999999999999999999999999999
Q ss_pred HhhhhcccCCCCCcCcccccCCCccHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccc
Q 009465 380 KFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISA 459 (534)
Q Consensus 380 ~f~d~f~~~~~~~~~~~f~~s~snn~~ar~~~~~~~ak~gg~~ea~kRll~~lP~s~Qs~S~SPYlD~sLFsYDdk~IS~ 459 (534)
||||+|+|++..+ .++||||||+|.+|+++++..|+|+||++|+|||+|.|||+|+||+|+|||||+|||+|||||||+
T Consensus 381 qF~D~f~n~~s~~-f~~fp~s~s~n~~a~~~~~~~k~K~~~~~~~v~r~l~slP~S~QS~S~SPYld~slFryD~K~VS~ 459 (532)
T KOG2558|consen 381 QFNDYFSNDRSLQ-FGDFPSSPSHNFLAHTFADSNKSKVSVDRHTVLRFLPSLPLSSQSLSSSPYLDFSLFRYDSKYVSP 459 (532)
T ss_pred HHHHhhccccccc-cccCcccccccHHHHHHHHhhhccccchHHHHHHhccCCCcccccCCCCccccchhhcccchhcCh
Confidence 9999999999554 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCeeeEecCCCCeeeEEEecCCCCCCCCCccceeEEEEecCCCceEEEEEeeccc-CCeeEEEeecC
Q 009465 460 TDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFL-QPSVVNIHFRR 534 (534)
Q Consensus 460 ~eRpk~~~e~PIrF~sR~~p~~lkFki~~g~~~~~~~~~~rr~vaf~FHP~~PFaiSvq~~~~~-~~~vvnfH~r~ 534 (534)
+||||.|+|+||||++|++ ++|||||+||++++++++++||+|||||||++||||||||| | .+||||||+||
T Consensus 460 ~erp~~c~d~PI~F~~R~~-~~LKF~I~ag~~~~~~~~~~r~lcaF~fHPf~PlaISIQ~t--~~p~yVvn~H~r~ 532 (532)
T KOG2558|consen 460 LERPHRCCDDPIVFLDRAT-DSLKFRIHAGARRHLNPLAPRELCAFIFHPFDPLAISIQKT--MNPSYVVNVHLRN 532 (532)
T ss_pred hhcccccCCCCeEEEecCC-CceEEEEecccccCCCCCChhheeeEeccCCCceeeeeecc--cCCceEEEEEecC
Confidence 9999999999999999999 79999999999999999999999999999999999999999 6 79999999997
No 3
>KOG2558 consensus Negative regulator of histones [Transcription]
Probab=99.87 E-value=2.9e-23 Score=216.54 Aligned_cols=247 Identities=10% Similarity=-0.092 Sum_probs=219.5
Q ss_pred CCchhhHHHHHHhhhccCCCCCCccccccccccccC---CCeeEeeecCCCceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 1 MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIV---PSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 1 ~~~~~Nlv~rL~~Re~~~~~pgt~~~~~R~fYqni~---P~~Tv~~Ve~P~~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
|..+.|+-.+...|.+..+.||..+.+.+.+|.++. |++||.++++|+|.++||+|+|+|++++++++..+++|.+.
T Consensus 1 m~~~~~~~~~v~~rl~r~r~sg~~v~~~~~~~~~l~~~~~~y~v~~p~~~~~~~t~~~~~lr~F~~~~~~l~~~~~~~~~ 80 (532)
T KOG2558|consen 1 MAYKKRLQSQNLVHLLQNRESGYTVGQQPGRMPLLAYERLFYKCITPCLTIDSITIPPIYLRKFTPDGRKLLAFSQDQRS 80 (532)
T ss_pred CCcccchhHHHHHHHHhcCCCCCccccCcceeeecccccccceeeccccCchhhccCCcceeeecCCchhheeechhhhc
Confidence 677889999999999999999999999999997665 56666677777889999999999999999999999999999
Q ss_pred CCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceEEEEEeecccCCCCC-CCCCCCCCCC
Q 009465 78 WLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAP-TTGRAIQGVP 156 (534)
Q Consensus 78 g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgryvivasa~~~~~~~~-~~n~av~~~p 156 (534)
|+..+.... ...+.+.+++-||.+|.+.|.++++...+.||+++++.-+.-+....+..+.+.+++. ..++++++.|
T Consensus 81 ~~~~~~~~~--~~~~~~~l~~~~D~~s~~~~s~~~~~~~~li~~~~f~~~~t~~~~~~~~~t~~~h~~~s~s~~~~p~~p 158 (532)
T KOG2558|consen 81 LLIYSYGGS--SCAAVGELIRQADVGSGECFSSQDTILKSRIFERLFPTKETLNLCQGDFGLYYLHREFSVFLEEGRYAM 158 (532)
T ss_pred ceeeccCCc--cccchhhhhhcccccceEEeehhHHHHHHHHHHHhcccchhhhccccccchhhhhhhccchhhhCCCCC
Confidence 877554411 2246788899999999999999999999999999999999999999999998888877 5689999999
Q ss_pred CcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCeEEEeeeeCCccCcchHH
Q 009465 157 FIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDEL 236 (534)
Q Consensus 157 ~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG~fc~eDD~l 236 (534)
.+..|+++.-.+.+|.+.|...|.. +++||.|+.|++++|+|++++.|.+|-++|.+.|..|.++.| |.++|+.
T Consensus 159 ~~~~~~v~~~~~~d~~v~~~~lfd~---~~a~~~g~fl~d~~l~~~~~rl~~~~~l~v~~~~h~I~~~~~---~v~~~~~ 232 (532)
T KOG2558|consen 159 LAAMTVVRGALPVDDYVRYPDLFDK---VDAFSYVFFLVDLKLGVVTDRLILPNDSIVIAHNHGISVFGS---TVMMMSR 232 (532)
T ss_pred CCceEEEEeccccCCcccCchHHhh---hhhheeeEEEecceeeeeEEEEecccccEEEecCceeeeeeh---hhhhccc
Confidence 9999999999999999999999977 999999999999999999999999999999999999999988 9999999
Q ss_pred HHhhccccchhcccccCCC
Q 009465 237 FLISNSQSLATSERSRLNP 255 (534)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~ 255 (534)
+.+...+.|++..+.+++.
T Consensus 233 ~~~~v~v~~v~~~k~~qq~ 251 (532)
T KOG2558|consen 233 LHQCVYVYWVNDGKFHQQE 251 (532)
T ss_pred ccceeEEEEecCCchhhhh
Confidence 9999998887776655543
No 4
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=92.53 E-value=0.6 Score=49.63 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=36.2
Q ss_pred cCCCCCCcccc------ccccccccCCCeeEeeecC--CC-ceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 17 RTPAPGTSVHC------ARRFYENIVPSFTVYDIEC--PD-HSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 17 ~~~~pgt~~~~------~R~fYqni~P~~Tv~~Ve~--P~-~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
|--+|||..-- ..+=-+--+|+.-...|.- .- .---+|||||+||+.=|-|. -|||+.|.
T Consensus 175 GLLPPGt~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDG-FiEVWny~ 243 (508)
T KOG0275|consen 175 GLLPPGTTIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDG-FIEVWNYT 243 (508)
T ss_pred CCCCCCceeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeeccccc-eeeeehhc
Confidence 45678887521 1222233445443333321 11 11358999999999988875 68999998
No 5
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=89.33 E-value=1.8 Score=45.56 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=50.6
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCc
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGN 130 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dg 130 (534)
==||||||++++-=..+..-..|=.|.|- .+.+.+..+++..+.=|+ -||.||
T Consensus 192 ~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--------------------------~~~tfs~~~~~~~~~~~a-~ftPds 244 (311)
T KOG1446|consen 192 DLEFSPDGKSILLSTNASFIYLLDAFDGT--------------------------VKSTFSGYPNAGNLPLSA-TFTPDS 244 (311)
T ss_pred eeEEcCCCCEEEEEeCCCcEEEEEccCCc--------------------------EeeeEeeccCCCCcceeE-EECCCC
Confidence 45899999999877776666677777752 222333333333333333 478999
Q ss_pred eEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEee
Q 009465 131 QFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLD 175 (534)
Q Consensus 131 ryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D 175 (534)
.||+.++- |=++|++++++|...-
T Consensus 245 ~Fvl~gs~---------------------dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 245 KFVLSGSD---------------------DGTIHVWNLETGKKVA 268 (311)
T ss_pred cEEEEecC---------------------CCcEEEEEcCCCcEee
Confidence 99998632 2368999999996543
No 6
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.18 E-value=7 Score=39.83 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=52.5
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccC-CeEeee--eeeccceEEeeecceeeeecc--
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLED-GVVLDE--KVFHNDFINLAHNMGVFLYDD-- 197 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~-G~v~D~--~~f~~D~I~LsHN~Gv~L~~d-- 197 (534)
.+.+..||++++|+... +=++.++|+.+ |.+... ...+... =++-.++-+..|
T Consensus 130 ~~~~~p~g~~l~v~~~~--------------------~~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pdg~ 187 (330)
T PRK11028 130 SANIDPDNRTLWVPCLK--------------------EDRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPNQQ 187 (330)
T ss_pred EeEeCCCCCEEEEeeCC--------------------CCEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCCCC
Confidence 34568899999886543 11577788865 544321 1111100 022235566666
Q ss_pred eeeeeeecccEEEEEEEcc-CCeEEEeeeeCC
Q 009465 198 LLAIVSLRYQTIHILQVRD-LGNLVDVRTIGS 228 (534)
Q Consensus 198 lLAILS~q~QtIhi~qI~~-~G~fv~vrtIG~ 228 (534)
.|.|.+....+|.+|.+.+ +|.+..+.+++.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence 7778888789999999975 578877777764
No 7
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.20 E-value=6.1 Score=43.65 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=57.7
Q ss_pred EEcCCCCeeeeeeEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeecc--------
Q 009465 110 VTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHN-------- 181 (534)
Q Consensus 110 ~~l~~~~e~L~refsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~-------- 181 (534)
..++.+...+|-|+. .++||.++++++......+ . ...-.++|. +..|| .+|.|...-.+..
T Consensus 182 ~~l~~~~~~~HHD~~-~l~nGn~L~l~~~~~~~~~----~---~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~ 251 (477)
T PF05935_consen 182 YDLPGGYYDFHHDID-ELPNGNLLILASETKYVDE----D---KDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDT 251 (477)
T ss_dssp EE--TTEE-B-S-EE-E-TTS-EEEEEEETTEE-T----S----EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--T
T ss_pred eecCCcccccccccE-ECCCCCEEEEEeecccccC----C---CCccEecCE-EEEEC-CCCCEEEEEehHHhCCccccc
Confidence 444444457777776 6789999999876533221 0 112246776 88888 9999887765543
Q ss_pred --------------ceEEeeecceeeeec-ceeeeeeeccc-EEEEEEEccCCeEEEeeeeCCc
Q 009465 182 --------------DFINLAHNMGVFLYD-DLLAIVSLRYQ-TIHILQVRDLGNLVDVRTIGSF 229 (534)
Q Consensus 182 --------------D~I~LsHN~Gv~L~~-dlLAILS~q~Q-tIhi~qI~~~G~fv~vrtIG~f 229 (534)
....+.|..+|..-. |=-.|+|.||| +|-+..- .+|+.+- .+|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~-~t~~i~W--ilg~~ 312 (477)
T PF05935_consen 252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY-RTGKIKW--ILGPP 312 (477)
T ss_dssp TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE--TTS-EEE--EES-S
T ss_pred ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC-CCCcEEE--EeCCC
Confidence 233457888888766 66778999999 7766653 4676543 46663
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.67 E-value=12 Score=38.98 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=81.9
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCC---CeeeeeeEEEEecC
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASC---NELICKDFFLSMEG 129 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~---~e~L~refsLft~d 129 (534)
.|+|||+++........+|.+|++....-. ++..-++..... ++...-|.. +..|
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~---------------------~~~~~~~~~~~~~~~~~~~~~~i~-ispd 255 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGS---------------------LTEIQTISTLPEGFTGENAPAEIA-ISPD 255 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTE---------------------EEEEEEEESCETTSCSSSSEEEEE-E-TT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCc---------------------eeEEEEeeeccccccccCCceeEE-EecC
Confidence 499999999999999999999999721111 122222222211 122333443 5789
Q ss_pred ceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeee--ecceeeeeeeccc
Q 009465 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFL--YDDLLAIVSLRYQ 207 (534)
Q Consensus 130 gryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L--~~dlLAILS~q~Q 207 (534)
|||+.|+... -+.|+.+=+|-++|.+.--..+...- .+-.++.+ -++.|+|..-..-
T Consensus 256 g~~lyvsnr~------------------~~sI~vf~~d~~~g~l~~~~~~~~~G---~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 256 GRFLYVSNRG------------------SNSISVFDLDPATGTLTLVQTVPTGG---KFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp SSEEEEEECT------------------TTEEEEEEECTTTTTEEEEEEEEESS---SSEEEEEE-TTSSEEEEEETTTT
T ss_pred CCEEEEEecc------------------CCEEEEEEEecCCCceEEEEEEeCCC---CCccEEEEeCCCCEEEEEecCCC
Confidence 9999985333 34566777777888765443333211 11224455 7899999999999
Q ss_pred EEEEEEEc-cCCeEEEee
Q 009465 208 TIHILQVR-DLGNLVDVR 224 (534)
Q Consensus 208 tIhi~qI~-~~G~fv~vr 224 (534)
+|.+|+|. ++|++..+.
T Consensus 315 ~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCCcEEEec
Confidence 99999995 578887765
No 9
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.07 E-value=27 Score=33.53 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=48.3
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeee
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAI 201 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAI 201 (534)
..|..||++++++... +=+++++|+++|++........ .+ .++... +..|++
T Consensus 212 i~~s~dg~~~~~~~~~--------------------~~~i~v~d~~~~~~~~~~~~~~-~~-----~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 212 IKLTKDGKTAFVALGP--------------------ANRVAVVDAKTYEVLDYLLVGQ-RV-----WQLAFTPDEKYLLT 265 (300)
T ss_pred eEECCCCCEEEEEcCC--------------------CCeEEEEECCCCcEEEEEEeCC-Cc-----ceEEECCCCCEEEE
Confidence 3467899997775322 0147899999998865432111 11 123332 234444
Q ss_pred eeecccEEEEEEEccCCeEEEeeeeCCcc
Q 009465 202 VSLRYQTIHILQVRDLGNLVDVRTIGSFC 230 (534)
Q Consensus 202 LS~q~QtIhi~qI~~~G~fv~vrtIG~fc 230 (534)
-+-..-+|.|+.+. +|+.+..-.+|.-+
T Consensus 266 ~~~~~~~i~v~d~~-~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 266 TNGVSNDVSVIDVA-ALKVIKSIKVGRLP 293 (300)
T ss_pred EcCCCCeEEEEECC-CCcEEEEEEccccc
Confidence 44446789999988 48887777788633
No 10
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=83.02 E-value=30 Score=33.19 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=47.1
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEe--eecceeeee--cce
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINL--AHNMGVFLY--DDL 198 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~L--sHN~Gv~L~--~dl 198 (534)
..-|..||+++++++.. . =+++++|+++|.+..+..++..-+.. ....|+.+. +..
T Consensus 161 ~~~~s~dg~~l~~~~~~--~------------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 161 FAEFTADGKELWVSSEI--G------------------GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred EEEECCCCCEEEEEcCC--C------------------CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence 35678899988875332 0 14888999999887776665321110 012233332 223
Q ss_pred eeeeeecccEEEEEEEccCCeEEEeeeeCC
Q 009465 199 LAIVSLRYQTIHILQVRDLGNLVDVRTIGS 228 (534)
Q Consensus 199 LAILS~q~QtIhi~qI~~~G~fv~vrtIG~ 228 (534)
+.+..---.+|+++.+. +|+.+..-..|.
T Consensus 221 ~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~ 249 (300)
T TIGR03866 221 AFVALGPANRVAVVDAK-TYEVLDYLLVGQ 249 (300)
T ss_pred EEEEcCCCCeEEEEECC-CCcEEEEEEeCC
Confidence 22322223578888876 577765444453
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.89 E-value=49 Score=33.68 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=23.3
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|+|||++|.+-+....+|.+|++.
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEe
Confidence 8999999999999988999999996
No 12
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.79 E-value=76 Score=34.34 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=85.3
Q ss_pred cCCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCccccc-CCCCCcccchhhhhhheeeEEEcCCCCeeeeeeE
Q 009465 45 ECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCC-RHDLPPKAKRFESFFTQLYSVTLASCNELICKDF 123 (534)
Q Consensus 45 e~P~~~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~-~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~ref 123 (534)
|.|-|..-+|||||+||++-.--.-.+.+|++. -+...+.+... ....-.|--+|--==+-.|+++=- +++.++=+-
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y 220 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-NSTVDVLEY 220 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceEEEEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEEecc-CCEEEEEEE
Confidence 456688899999999999999999999999998 23222211111 111222333333222222222110 111111000
Q ss_pred EEEecCceEEEEEeecccCCCCC--CCC-CCCCC----------CCCcceEEEEEEEccCCeEee------eeeeccceE
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAP--TTG-RAIQG----------VPFIEKITFHLLRLEDGVVLD------EKVFHNDFI 184 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~--~~n-~av~~----------~p~le~ytfhlVdL~~G~v~D------~~~f~~D~I 184 (534)
.= ..|++=-+=+.. ..|+.= .+. .+|.- +.-...|+.+=||=.+|++.= .-.++-|+-
T Consensus 221 ~~--~~g~~~~lQ~i~-tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 221 NP--AVGKFEELQTID-TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred cC--CCceEEEeeeec-cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Confidence 00 012222221111 000000 000 11111 223468888888888886321 223455553
Q ss_pred EeeecceeeeecceeeeeeecccEEEEEEEcc-CCeEEEee
Q 009465 185 NLAHNMGVFLYDDLLAIVSLRYQTIHILQVRD-LGNLVDVR 224 (534)
Q Consensus 185 ~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~-~G~fv~vr 224 (534)
.=+ -+++|++..=..=+|++|.+.+ .|++.+..
T Consensus 298 i~~-------~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 298 INP-------SGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred eCC-------CCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 333 2688888888888999999964 88887754
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=73.90 E-value=57 Score=34.02 Aligned_cols=86 Identities=10% Similarity=0.087 Sum_probs=50.9
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecc--eee
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDD--LLA 200 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~d--lLA 200 (534)
+..|+.||+|++|+-.. .+.+.++-+|-++|.+.-...++.+. =+.-.++.++.| .+-
T Consensus 148 ~v~~~pdg~~v~v~dlG------------------~D~v~~~~~~~~~~~l~~~~~~~~~~--G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLG------------------ADRVYVYDIDDDTGKLTPVDSIKVPP--GSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp EEEE-TTSSEEEEEETT------------------TTEEEEEEE-TTS-TEEEEEEEECST--TSSEEEEEE-TTSSEEE
T ss_pred eEEECCCCCEEEEEecC------------------CCEEEEEEEeCCCceEEEeecccccc--CCCCcEEEEcCCcCEEE
Confidence 78999999999986433 24444555555555554422222221 011123444444 566
Q ss_pred eeeecccEEEEEEEc-cCCeEEEeeeeCC
Q 009465 201 IVSLRYQTIHILQVR-DLGNLVDVRTIGS 228 (534)
Q Consensus 201 ILS~q~QtIhi~qI~-~~G~fv~vrtIG~ 228 (534)
|+.-.-.+|.+|.+. ++|++..+.+|.-
T Consensus 208 v~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 208 VVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EecCCCCcEEEEeecccCCceeEEEEeee
Confidence 777778999999998 6789988887765
No 14
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=73.17 E-value=21 Score=38.19 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=21.8
Q ss_pred CceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 48 DHSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 48 ~~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
++...+|||||||+..-++|. .|-++...
T Consensus 38 ~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~ 66 (369)
T PF02239_consen 38 PHAGLKFSPDGRYLYVANRDG-TVSVIDLA 66 (369)
T ss_dssp EEEEEE-TT-SSEEEEEETTS-EEEEEETT
T ss_pred ceeEEEecCCCCEEEEEcCCC-eEEEEECC
Confidence 366789999999999999874 77777765
No 15
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=71.04 E-value=18 Score=35.03 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=26.5
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeee
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF 179 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f 179 (534)
.+-+-+||||++.|+.. +.. . .+-.|-|++. +|.++.+..|
T Consensus 148 ~~~WsPdGr~~~ta~t~-~r~-------------~-~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 148 DVEWSPDGRYLATATTS-PRL-------------R-VDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred EEEEcCCCCEEEEEEec-cce-------------e-ccccEEEEEe-cCeEeEecch
Confidence 34588999999987654 111 1 2345777777 4777766655
No 16
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=68.59 E-value=5.8 Score=44.78 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=39.3
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceE
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgry 132 (534)
-|||||+||.|.|+|. -|.|+.|. . ..+. .++.+||-=+-|+ ---.||+|
T Consensus 297 ~FS~DG~~LA~VSqDG-fLRvF~fd--------t------~eLl-g~mkSYFGGLLCv--------------cWSPDGKy 346 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDG-FLRIFDFD--------T------QELL-GVMKSYFGGLLCV--------------CWSPDGKY 346 (636)
T ss_pred eEcCCCceEEEEecCc-eEEEeecc--------H------HHHH-HHHHhhccceEEE--------------EEcCCccE
Confidence 5999999999999996 69999997 1 1111 2688898655543 34567888
Q ss_pred EEEE
Q 009465 133 GLFA 136 (534)
Q Consensus 133 viva 136 (534)
++.|
T Consensus 347 IvtG 350 (636)
T KOG2394|consen 347 IVTG 350 (636)
T ss_pred EEec
Confidence 8775
No 17
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=67.24 E-value=8.5 Score=37.23 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=28.7
Q ss_pred EeeecCCCceeeeeCCCCCeEEEeeCC-----CceEEEEeecC
Q 009465 41 VYDIECPDHSFRKFTDDGQYLISFSRN-----HQDLIVYRPMW 78 (534)
Q Consensus 41 v~~Ve~P~~~lrKFTpDG~~LIaFS~d-----q~~L~vYry~g 78 (534)
|...+.+.+.---|||||+||++-+.. -.-+.||.|.|
T Consensus 138 i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 138 ISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred eeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 444466677777899999999998764 35568888885
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=66.57 E-value=13 Score=38.87 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=37.5
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
.+|||||+||.+-|+|++ +.|++-- .||++- +.+ .+++--+=||. |.-||+
T Consensus 221 C~lSPd~k~lat~ssdkt-v~iwn~~------------------------~~~kle--~~l-~gh~rWvWdc~-FS~dg~ 271 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKT-VKIWNTD------------------------DFFKLE--LVL-TGHQRWVWDCA-FSADGE 271 (311)
T ss_pred EEECCCCcEEEeecCCce-EEEEecC------------------------CceeeE--EEe-ecCCceEEeee-eccCcc
Confidence 479999999999999975 3333322 123332 222 33445566765 555999
Q ss_pred EEEEEeec
Q 009465 132 FGLFATST 139 (534)
Q Consensus 132 yvivasa~ 139 (534)
|++-||+-
T Consensus 272 YlvTassd 279 (311)
T KOG0315|consen 272 YLVTASSD 279 (311)
T ss_pred EEEecCCC
Confidence 99887554
No 19
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=64.13 E-value=8.2 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=15.1
Q ss_pred eeeeeCCCCCeEEEeeCCC--ceEEEE
Q 009465 50 SFRKFTDDGQYLISFSRNH--QDLIVY 74 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq--~~L~vY 74 (534)
.--.|||||++|+=.|.-. ..-.||
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3457999999987555444 444444
No 20
>PRK04922 tolB translocation protein TolB; Provisional
Probab=63.94 E-value=97 Score=33.37 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=22.5
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEe
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVL 174 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~ 174 (534)
-+..||+++++.+.. . ..+.++++|+.+|...
T Consensus 342 ~~SpDG~~Ia~~~~~---~---------------~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 342 SVSPDGKKIAMVHGS---G---------------GQYRIAVMDLSTGSVR 373 (433)
T ss_pred EECCCCCEEEEEECC---C---------------CceeEEEEECCCCCeE
Confidence 456899998885432 0 1358999999998753
No 21
>PRK04792 tolB translocation protein TolB; Provisional
Probab=62.61 E-value=1e+02 Score=33.74 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=41.6
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccce---EEeeecceeeeecceeee
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDF---INLAHNMGVFLYDDLLAI 201 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~---I~LsHN~Gv~L~~dlLAI 201 (534)
-|..||+++++.+.. . + +..++++|+++|.+. +.++.... ..++- -++.|+.
T Consensus 312 ~wSpDG~~I~f~s~~--~-------g---------~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~Sp------DG~~l~~ 366 (448)
T PRK04792 312 SWHPDGKSLIFTSER--G-------G---------KPQIYRVNLASGKVS-RLTFEGEQNLGGSITP------DGRSMIM 366 (448)
T ss_pred EECCCCCEEEEEECC--C-------C---------CceEEEEECCCCCEE-EEecCCCCCcCeeECC------CCCEEEE
Confidence 366899999885422 0 1 136899999999752 23333221 11222 3456777
Q ss_pred eeecccEEEEEEEc-cCCeEEE
Q 009465 202 VSLRYQTIHILQVR-DLGNLVD 222 (534)
Q Consensus 202 LS~q~QtIhi~qI~-~~G~fv~ 222 (534)
.+......+|+.+. ++|....
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred EEecCCceEEEEEECCCCCeEE
Confidence 77665666666664 3455443
No 22
>PRK02889 tolB translocation protein TolB; Provisional
Probab=61.04 E-value=99 Score=33.36 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=38.5
Q ss_pred EecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeec
Q 009465 126 SMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLR 205 (534)
Q Consensus 126 ft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q 205 (534)
|..||++++++|-- . +. ..++.+|+.+|.+ .+.++..+... +-.++=-++.||..+-.
T Consensus 291 wSpDG~~l~f~s~~---------~----g~-----~~Iy~~~~~~g~~-~~lt~~g~~~~---~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 291 FSPDGRSIYFTSDR---------G----GA-----PQIYRMPASGGAA-QRVTFTGSYNT---SPRISPDGKLLAYISRV 348 (427)
T ss_pred EcCCCCEEEEEecC---------C----CC-----cEEEEEECCCCce-EEEecCCCCcC---ceEECCCCCEEEEEEcc
Confidence 88999999885321 0 11 2478888888753 22333322110 11122235556655543
Q ss_pred c--cEEEEEEEccCCeEEEe
Q 009465 206 Y--QTIHILQVRDLGNLVDV 223 (534)
Q Consensus 206 ~--QtIhi~qI~~~G~fv~v 223 (534)
. ..|+++.+. +|....+
T Consensus 349 ~g~~~I~v~d~~-~g~~~~l 367 (427)
T PRK02889 349 GGAFKLYVQDLA-TGQVTAL 367 (427)
T ss_pred CCcEEEEEEECC-CCCeEEc
Confidence 2 357777765 4654433
No 23
>PRK03629 tolB translocation protein TolB; Provisional
Probab=60.92 E-value=1e+02 Score=33.43 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=19.4
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 50 SFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.--.|||||++|+.-|.+.....||.+.
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 3457899999887766655455677653
No 24
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=60.29 E-value=5.4 Score=46.06 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=25.7
Q ss_pred cCCCeeEeeecCCCceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 35 IVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 35 i~P~~Tv~~Ve~P~~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
..=++||.-+ +|||||+||++.|+|-+ .-+|.=+
T Consensus 569 ~~HsLTVT~l--------~FSpdg~~LLsvsRDRt-~sl~~~~ 602 (764)
T KOG1063|consen 569 EGHSLTVTRL--------AFSPDGRYLLSVSRDRT-VSLYEVQ 602 (764)
T ss_pred cccceEEEEE--------EECCCCcEEEEeecCce-EEeeeee
Confidence 3446777644 79999999999999955 5667654
No 25
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=60.19 E-value=72 Score=35.10 Aligned_cols=139 Identities=16% Similarity=0.041 Sum_probs=82.4
Q ss_pred ccccccccCCCeeEeeecCCC-ceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhhe
Q 009465 28 ARRFYENIVPSFTVYDIECPD-HSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQ 106 (534)
Q Consensus 28 ~R~fYqni~P~~Tv~~Ve~P~-~~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~ 106 (534)
.|-||..+-...+-.-+..+. ...-+|||||++|+=-+..--...||-+---+....
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~---------------------- 275 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP---------------------- 275 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----------------------
Confidence 356777777777777677674 568899999977653333334445555431110111
Q ss_pred eeEEEcCCCCeeeeeeEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEe
Q 009465 107 LYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINL 186 (534)
Q Consensus 107 ~~~~~l~~~~e~L~refsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~L 186 (534)
.| .+++-++.+= -+.+||+++.++|... +.| -++++|++.+.+ .+.++.-..=.
T Consensus 276 ----~L-t~~~gi~~~P-s~spdG~~ivf~Sdr~-------------G~p-----~I~~~~~~g~~~-~riT~~~~~~~- 329 (425)
T COG0823 276 ----RL-TNGFGINTSP-SWSPDGSKIVFTSDRG-------------GRP-----QIYLYDLEGSQV-TRLTFSGGGNS- 329 (425)
T ss_pred ----ec-ccCCccccCc-cCCCCCCEEEEEeCCC-------------CCc-----ceEEECCCCCce-eEeeccCCCCc-
Confidence 01 0111111111 2568999999986552 233 589999999977 55555544222
Q ss_pred eecceeeeecceeeeeeec--ccEEEEEEEcc
Q 009465 187 AHNMGVFLYDDLLAIVSLR--YQTIHILQVRD 216 (534)
Q Consensus 187 sHN~Gv~L~~dlLAILS~q--~QtIhi~qI~~ 216 (534)
+-+++=.++.+++-+.. .+-|-++.+..
T Consensus 330 --~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 330 --NPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred --CccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 56888899999999932 24455555554
No 26
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=60.14 E-value=1.1e+02 Score=31.86 Aligned_cols=33 Identities=6% Similarity=-0.106 Sum_probs=22.5
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEee
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLD 175 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D 175 (534)
-|..||+.+++++.. . .+..++++|+.+|...+
T Consensus 240 ~~spDg~~l~~~~~~--~----------------~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 240 AFSPDGSKLAVSLSK--D----------------GNPDIYVMDLDGKQLTR 272 (417)
T ss_pred EECCCCCEEEEEECC--C----------------CCccEEEEECCCCCEEE
Confidence 468899988875322 0 12468999999987543
No 27
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.95 E-value=23 Score=37.72 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=55.5
Q ss_pred eeeCCCCCeEEEeeCCC----ceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEe
Q 009465 52 RKFTDDGQYLISFSRNH----QDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSM 127 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq----~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft 127 (534)
--|||||++|-|=--|+ --|=||+.+ -++.-- + .|+++=-=-|. ...+
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrv-g------------E~~t~GiGpHe--------------v~lm 170 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRV-G------------EFSTHGIGPHE--------------VTLM 170 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecc-ccccee-c------------ccccCCcCcce--------------eEEe
Confidence 35899999999844443 446778776 111111 1 12221111122 2457
Q ss_pred cCceEEEEEeecccCC----CCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccc
Q 009465 128 EGNQFGLFATSTAQIH----DAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND 182 (534)
Q Consensus 128 ~dgryvivasa~~~~~----~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D 182 (534)
.|||-+++|--..-.+ .+.-|-++++| ++-|+|-.||.+..+.++..+
T Consensus 171 ~DGrtlvvanGGIethpdfgR~~lNldsMeP-------Slvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 171 ADGRTLVVANGGIETHPDFGRTELNLDSMEP-------SLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred cCCcEEEEeCCceecccccCccccchhhcCc-------cEEEEeccccchhhhccCchh
Confidence 7999999975432111 11124444443 588999999999988887765
No 28
>PRK04792 tolB translocation protein TolB; Provisional
Probab=59.71 E-value=1.5e+02 Score=32.44 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=39.3
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeec--cceEEeeecceeeeecceeeee
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH--NDFINLAHNMGVFLYDDLLAIV 202 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~--~D~I~LsHN~Gv~L~~dlLAIL 202 (534)
-+..||+++++++.. . .+..++++|+++|.+..--... .....++.+ +..|++.
T Consensus 268 ~wSPDG~~La~~~~~--~----------------g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpD------G~~I~f~ 323 (448)
T PRK04792 268 RFSPDGKKLALVLSK--D----------------GQPEIYVVDIATKALTRITRHRAIDTEPSWHPD------GKSLIFT 323 (448)
T ss_pred eECCCCCEEEEEEeC--C----------------CCeEEEEEECCCCCeEECccCCCCccceEECCC------CCEEEEE
Confidence 467899998875432 0 1246899999999754211111 111223322 3455555
Q ss_pred eecccEEEEEEEc-cCCeEEEe
Q 009465 203 SLRYQTIHILQVR-DLGNLVDV 223 (534)
Q Consensus 203 S~q~QtIhi~qI~-~~G~fv~v 223 (534)
|-+.-..+||.+. ++|+...+
T Consensus 324 s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 324 SERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred ECCCCCceEEEEECCCCCEEEE
Confidence 6544344455543 24665444
No 29
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=58.98 E-value=67 Score=34.65 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=53.3
Q ss_pred eCCCCCeEEEeeC---------CCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCe---eeee
Q 009465 54 FTDDGQYLISFSR---------NHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNE---LICK 121 (534)
Q Consensus 54 FTpDG~~LIaFS~---------dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e---~L~r 121 (534)
+||||+.|-.=+. +...|.||.-. + . +....+.+...-| --.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--t--~---------------------~~~~~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--T--H---------------------LPIADIELPEGPRFLVGTYP 107 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECc--c--C---------------------cEEeEEccCCCchhhccCcc
Confidence 8999998877777 77778888766 1 1 1223333333223 2345
Q ss_pred eEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeee
Q 009465 122 DFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF 179 (534)
Q Consensus 122 efsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f 179 (534)
..+-++.|||++.|+-.++ +=+.-+||+++|++..+..-
T Consensus 108 ~~~~ls~dgk~l~V~n~~p-------------------~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSP-------------------SPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred ceEEECCCCCEEEEecCCC-------------------CCEEEEEECCCCcEEEEEeC
Confidence 5677889999999975441 12356788888887776665
No 30
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=58.55 E-value=49 Score=35.46 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=17.0
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-+||||+|+++=......+.|..-.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETT
T ss_pred EEcCCCCEEEEEecCCCceeEeccc
Confidence 3688999888777777777777654
No 31
>PRK04922 tolB translocation protein TolB; Provisional
Probab=57.83 E-value=1.3e+02 Score=32.52 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=41.5
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeee
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSL 204 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~ 204 (534)
-|.+||++++++|-- . +. -.+|++|+.+|.+ .+.++..+.. .+-.++=-++.+|..+.
T Consensus 298 ~~spDG~~l~f~sd~--~-----------g~-----~~iy~~dl~~g~~-~~lt~~g~~~---~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 298 TWAPDGKSIYFTSDR--G-----------GR-----PQIYRVAASGGSA-ERLTFQGNYN---ARASVSPDGKKIAMVHG 355 (433)
T ss_pred EECCCCCEEEEEECC--C-----------CC-----ceEEEEECCCCCe-EEeecCCCCc---cCEEECCCCCEEEEEEC
Confidence 468899999986421 0 11 1588899998863 2333332211 01122223567777765
Q ss_pred cc--cEEEEEEEccCCeEEEe
Q 009465 205 RY--QTIHILQVRDLGNLVDV 223 (534)
Q Consensus 205 q~--QtIhi~qI~~~G~fv~v 223 (534)
.. ..|+++.+. +|....+
T Consensus 356 ~~~~~~I~v~d~~-~g~~~~L 375 (433)
T PRK04922 356 SGGQYRIAVMDLS-TGSVRTL 375 (433)
T ss_pred CCCceeEEEEECC-CCCeEEC
Confidence 43 256777654 4665543
No 32
>PRK03629 tolB translocation protein TolB; Provisional
Probab=54.86 E-value=1.8e+02 Score=31.52 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=22.2
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeE
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV 173 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v 173 (534)
.-+.+||++++++|.. + + ...++++|+.+|.+
T Consensus 292 ~~wSPDG~~I~f~s~~---------~----g-----~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQ---------A----G-----RPQVYKVNINGGAP 323 (429)
T ss_pred eEECCCCCEEEEEeCC---------C----C-----CceEEEEECCCCCe
Confidence 4578999999886532 0 1 12588999998864
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=54.03 E-value=1.2e+02 Score=33.31 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=72.2
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecC
Q 009465 50 SFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEG 129 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~d 129 (534)
.=-+|||||+++++-|.|.+ |.|++-.-.+.+. .++. .+.+.. =++-|.++
T Consensus 207 ~~~~fs~d~~~l~s~s~D~t-iriwd~~~~~~~~------------------------~~l~-gH~~~v---~~~~f~p~ 257 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKT-LRIWDLKDDGRNL------------------------KTLK-GHSTYV---TSVAFSPD 257 (456)
T ss_pred eeeEECCCCcEEEEecCCce-EEEeeccCCCeEE------------------------EEec-CCCCce---EEEEecCC
Confidence 34589999999999887754 6666653111010 1111 122222 26778889
Q ss_pred ceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEE-eeecceeeeecceeeeeeecccE
Q 009465 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFIN-LAHNMGVFLYDDLLAIVSLRYQT 208 (534)
Q Consensus 130 gryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~-LsHN~Gv~L~~dlLAILS~q~Qt 208 (534)
|+.++- .+ . |=|+.++|+.+|...-...-+.|.|. ++++ --+..|+.-|. -|+
T Consensus 258 g~~i~S--gs-~------------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~----~d~~~l~s~s~-d~~ 311 (456)
T KOG0266|consen 258 GNLLVS--GS-D------------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFS----PDGNLLVSASY-DGT 311 (456)
T ss_pred CCEEEE--ec-C------------------CCcEEEEeccCCeEEEeeeccCCceEEEEEC----CCCCEEEEcCC-Ccc
Confidence 954443 33 1 23688999999988877777777665 3333 22455666666 699
Q ss_pred EEEEEEccCCeEE
Q 009465 209 IHILQVRDLGNLV 221 (534)
Q Consensus 209 Ihi~qI~~~G~fv 221 (534)
|.|+-+.. |.+.
T Consensus 312 i~vwd~~~-~~~~ 323 (456)
T KOG0266|consen 312 IRVWDLET-GSKL 323 (456)
T ss_pred EEEEECCC-Ccee
Confidence 99999873 6654
No 34
>PRK00178 tolB translocation protein TolB; Provisional
Probab=53.36 E-value=1.6e+02 Score=31.38 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=17.6
Q ss_pred eeeeeCCCCCeEEEeeCCC--ceEEEEee
Q 009465 50 SFRKFTDDGQYLISFSRNH--QDLIVYRP 76 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq--~~L~vYry 76 (534)
.--+|||||++|+..|.+. ..|.++..
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l 230 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNL 230 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEEC
Confidence 3448999999988777554 34444443
No 35
>PTZ00421 coronin; Provisional
Probab=47.85 E-value=4.1e+02 Score=29.85 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=34.5
Q ss_pred eEEEEEEEccCCeEeeeeeeccceEE-eeecceeeeecceeeeeeecccEEEEEEEccCCeEE
Q 009465 160 KITFHLLRLEDGVVLDEKVFHNDFIN-LAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLV 221 (534)
Q Consensus 160 ~ytfhlVdL~~G~v~D~~~f~~D~I~-LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv 221 (534)
|-++.|+|+++|.......-+.+.|. ++-| --+++||.-| .-.+|+|+.++. |+.+
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s----pdG~lLatgs-~Dg~IrIwD~rs-g~~v 203 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWN----LDGSLLCTTS-KDKKLNIIDPRD-GTIV 203 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEE----CCCCEEEEec-CCCEEEEEECCC-CcEE
Confidence 45789999999986544433333331 2211 1255666655 458899999874 7654
No 36
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=46.97 E-value=3e+02 Score=28.72 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=17.3
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|+|||++|+.-|.......||.+.
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEE
Confidence 37899999988766544444566553
No 37
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=46.13 E-value=1e+02 Score=33.13 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=36.5
Q ss_pred EEEEEEEccCCeEeeeeeeccc-----eEEeeecceeeeecceeeeeeecccEEEEEEEccC
Q 009465 161 ITFHLLRLEDGVVLDEKVFHND-----FINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDL 217 (534)
Q Consensus 161 ytfhlVdL~~G~v~D~~~f~~D-----~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~ 217 (534)
.-+-|.|.++|.++-+..==.| .|..||| ...|||.| .++|+|||.+.+.
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsS-dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSS-DKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC------ccEEEEEc-CCCeEEEEEeecC
Confidence 3467889999988777554444 3566776 45778877 5699999999873
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=44.89 E-value=2e+02 Score=31.43 Aligned_cols=120 Identities=17% Similarity=0.056 Sum_probs=72.8
Q ss_pred CceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeee-eeeEEEE
Q 009465 48 DHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELI-CKDFFLS 126 (534)
Q Consensus 48 ~~~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L-~refsLf 126 (534)
+..---|++||++|++=|.| ..|.||...+-... ++..-.+.+.. .==++.|
T Consensus 290 ~is~~~f~~d~~~l~s~s~d-~~i~vwd~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~f 342 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYD-GTIRVWDLETGSKL--------------------------CLKLLSGAENSAPVTSVQF 342 (456)
T ss_pred ceEEEEECCCCCEEEEcCCC-ccEEEEECCCCcee--------------------------eeecccCCCCCCceeEEEE
Confidence 44445799999999999775 56788887732210 11111222211 2226778
Q ss_pred ecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecc
Q 009465 127 MEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRY 206 (534)
Q Consensus 127 t~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~ 206 (534)
.+||.|+++++.. =++-++|+..|.......-+..-+ ..+..=++.-+..+.+.+-..
T Consensus 343 sp~~~~ll~~~~d---------------------~~~~~w~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 343 SPNGKYLLSASLD---------------------RTLKLWDLRSGKSVGTYTGHSNLV-RCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred CCCCcEEEEecCC---------------------CeEEEEEccCCcceeeecccCCcc-eeEecccccCCCCeEEEEeCC
Confidence 8999999986433 246678888776555544443321 233222333356667777888
Q ss_pred cEEEEEEEcc
Q 009465 207 QTIHILQVRD 216 (534)
Q Consensus 207 QtIhi~qI~~ 216 (534)
.+|+++.+..
T Consensus 401 ~~v~~~~~~s 410 (456)
T KOG0266|consen 401 GSVYVWDSSS 410 (456)
T ss_pred ceEEEEeCCc
Confidence 8899888864
No 39
>PRK04043 tolB translocation protein TolB; Provisional
Probab=44.41 E-value=3.2e+02 Score=29.86 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=18.9
Q ss_pred ceeeeeCCCCCeEEEeeCCC-ceEEEEeec
Q 009465 49 HSFRKFTDDGQYLISFSRNH-QDLIVYRPM 77 (534)
Q Consensus 49 ~~lrKFTpDG~~LIaFS~dq-~~L~vYry~ 77 (534)
...-+|||||++++++++.. ..=.||.+-
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 34678999999888885443 233555553
No 40
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=43.83 E-value=1.7e+02 Score=31.89 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=76.2
Q ss_pred ecCCCcee--eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeee
Q 009465 44 IECPDHSF--RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICK 121 (534)
Q Consensus 44 Ve~P~~~l--rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~r 121 (534)
-.+|..|+ .|.||||.-+++-|.|+- |.+|.-- . +... ...+ =-..|+.+-++.+..++-..
T Consensus 45 tt~p~nf~kgckWSPDGSciL~~sedn~-l~~~nlP--~-----dlys-~~~~-----~~~~~~~~~~~r~~eg~tvy-- 108 (406)
T KOG2919|consen 45 TTKPLNFLKGCKWSPDGSCILSLSEDNC-LNCWNLP--F-----DLYS-KKAD-----GPLNFSKHLSYRYQEGETVY-- 108 (406)
T ss_pred cCCchhhhccceeCCCCceEEeecccCe-eeEEecC--h-----hhcc-cCCC-----CccccccceeEEeccCCEEE--
Confidence 45688887 499999999999999874 5666543 1 1111 0111 11346677777776665333
Q ss_pred eEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeee--ccceEEeeecc-----eeee
Q 009465 122 DFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF--HNDFINLAHNM-----GVFL 194 (534)
Q Consensus 122 efsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f--~~D~I~LsHN~-----Gv~L 194 (534)
|+|-+ -.+-|.- +.++-.+... .+=-+|++|--||.+.-+++- +.|-+--||.- |=+|
T Consensus 109 dy~wY------s~M~s~q-P~t~l~a~ss--------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql 173 (406)
T KOG2919|consen 109 DYCWY------SRMKSDQ-PSTNLFAVSS--------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL 173 (406)
T ss_pred EEEee------eccccCC-Cccceeeecc--------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE
Confidence 23332 2221111 1110001111 111289999999987544322 23444434321 3333
Q ss_pred ecceeeeeeecccEEEEEEEccCCeEEEeee
Q 009465 195 YDDLLAIVSLRYQTIHILQVRDLGNLVDVRT 225 (534)
Q Consensus 195 ~~dlLAILS~q~QtIhi~qI~~~G~fv~vrt 225 (534)
+-- -.-|||||.+..-|++-+|.+
T Consensus 174 faG-------ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 174 FAG-------YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred eec-------ccceEEEeeccCCCCCCcchh
Confidence 321 236999999955577766664
No 41
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=43.82 E-value=32 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=25.3
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeecC
Q 009465 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 49 ~~lrKFTpDG~~LIaFS~dq~~L~vYry~g 78 (534)
+-+-.++|.+. |||...+..+|.|||..|
T Consensus 14 v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 14 VSCMSWCPTMD-LIALGTEDGEVLVYRLNW 42 (47)
T ss_pred EEEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence 44778999987 899999999999999975
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=39.78 E-value=2.9e+02 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=20.0
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|+|||++|++-+.| ..+.+|...
T Consensus 15 ~~~~~~~~~l~~~~~~-g~i~i~~~~ 39 (289)
T cd00200 15 VAFSPDGKLLATGSGD-GTIKVWDLE 39 (289)
T ss_pred EEEcCCCCEEEEeecC-cEEEEEEee
Confidence 4689999998887764 578888886
No 43
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=39.09 E-value=77 Score=37.86 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=48.9
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeee
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSL 204 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~ 204 (534)
=|-+|||.+|.|++- =|+-++||-+|.+.|...+.+-.+.|+-+ ==+|.||...+
T Consensus 583 ~FS~DgrWlisasmD---------------------~tIr~wDlpt~~lID~~~vd~~~~sls~S----PngD~LAT~Hv 637 (910)
T KOG1539|consen 583 TFSPDGRWLISASMD---------------------STIRTWDLPTGTLIDGLLVDSPCTSLSFS----PNGDFLATVHV 637 (910)
T ss_pred EeCCCCcEEEEeecC---------------------CcEEEEeccCcceeeeEecCCcceeeEEC----CCCCEEEEEEe
Confidence 366788888776553 36889999999999999998888877732 23788888888
Q ss_pred cccEEEEEE
Q 009465 205 RYQTIHILQ 213 (534)
Q Consensus 205 q~QtIhi~q 213 (534)
-+=-||++-
T Consensus 638 d~~gIylWs 646 (910)
T KOG1539|consen 638 DQNGIYLWS 646 (910)
T ss_pred cCceEEEEE
Confidence 877777653
No 44
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=39.06 E-value=41 Score=33.00 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHhhhHHHHhHhhhheeh-----------ccccCeeeEeecccccccc-cCC-----CCCceEEEEEeeecceEEEEEeC
Q 009465 307 KFFFHFQDYVDLIIWKVQ-----------FLDRHHLLIKFGSVDGGVS-RNV-----DHHPAFFAVYNMETTEVVAFYQN 369 (534)
Q Consensus 307 ~Fy~~F~~~~~L~MWKmQ-----------lLD~~hLLIk~~s~D~~~~-r~~-----~~~~s~fvvYn~~t~eVl~vyen 369 (534)
+.|+.|..|+.|..=.+. +++.++|+.|+-+.=.+.- |.. .-..=+|+++|..+|+|-|.|=.
T Consensus 82 ~hW~kf~~f~~~~~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~~~~~i~GaSf~GFYYI~~~~~~G~I~G~Yyh 161 (176)
T PF09783_consen 82 EHWSKFPPFRPLSKDENLQKLSDDFDYEDLLNQRYIFMRWKERFLVPDHRVKSISGASFEGFYYICLDRSTGSIEGYYYH 161 (176)
T ss_pred HHHhcCCcchhhhhhhccccccCCccchhhcCCCcEEEEEEeEEEcccccCCCcCceeEeeEEEEEEEccCCeEEEEEEC
Confidence 577788888777776665 7788899999876622211 111 12356899999999999999943
No 45
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=38.71 E-value=1.4e+02 Score=33.86 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=48.4
Q ss_pred EEEEEEc---cCCeEeeeeeeccceEEeeecceeeeecceeeeeeecc------------------------cEEEEEEE
Q 009465 162 TFHLLRL---EDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRY------------------------QTIHILQV 214 (534)
Q Consensus 162 tfhlVdL---~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~------------------------QtIhi~qI 214 (534)
.+++||. ++-++..+..+... -+++||.+|.|.|++-.+ =.|.+|.|
T Consensus 32 ~l~Iida~p~~~~~~~s~I~~~~~------~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~vYDI 105 (521)
T PF09826_consen 32 RLYIIDAYPAEEMKVVSRIDLDGS------PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSSTKITVYDI 105 (521)
T ss_pred EEEEEECCCchhceEEEEEecCCC------hhheEEcCCEEEEEEeccccccccccccccccccccccCCceeEEEEEEC
Confidence 3778887 56678888888777 469999999999999443 25788876
Q ss_pred cc------------CCeEEEeeeeCCccC
Q 009465 215 RD------------LGNLVDVRTIGSFCR 231 (534)
Q Consensus 215 ~~------------~G~fv~vrtIG~fc~ 231 (534)
.+ +|.++.-|.||-.-+
T Consensus 106 sD~~~P~~~~~~~~~G~yvsSR~ig~~vy 134 (521)
T PF09826_consen 106 SDPSNPKLLREIEIEGSYVSSRKIGDYVY 134 (521)
T ss_pred CCCCCceEEEEEEeeeEEEeEEEECCEEE
Confidence 42 588888888887554
No 46
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=37.25 E-value=35 Score=41.10 Aligned_cols=25 Identities=20% Similarity=0.543 Sum_probs=21.9
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.||||||+|| |+.+|.+-+.|.++.
T Consensus 75 VR~S~dG~~l-AsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 75 VRFSPDGSYL-ASGSDDRLVMIWERA 99 (942)
T ss_pred EEECCCCCeE-eeccCcceEEEeeec
Confidence 5899999997 677777999999999
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=37.25 E-value=2.9e+02 Score=31.82 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=20.9
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCC
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLS 80 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~ 80 (534)
||+|||++++.-+.|.+ ||=|-|-+
T Consensus 197 RysPDG~~Fat~gsDgk---i~iyDGkt 221 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGK---IYIYDGKT 221 (603)
T ss_pred EECCCCCeEEEecCCcc---EEEEcCCC
Confidence 89999999999999987 56676534
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.14 E-value=24 Score=39.04 Aligned_cols=37 Identities=30% Similarity=0.498 Sum_probs=27.7
Q ss_pred CCCeeEeeec--CCCceeeeeCCCCCeEEEeeCCCceEE
Q 009465 36 VPSFTVYDIE--CPDHSFRKFTDDGQYLISFSRNHQDLI 72 (534)
Q Consensus 36 ~P~~Tv~~Ve--~P~~~lrKFTpDG~~LIaFS~dq~~L~ 72 (534)
+|+.|.-=++ +-..++-+||++|+||..=|+|++.++
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taii 250 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAII 250 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEE
Confidence 4565543222 445789999999999999999998853
No 49
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=36.77 E-value=1.6e+02 Score=31.18 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=30.1
Q ss_pred eeeeeEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeee
Q 009465 118 LICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDE 176 (534)
Q Consensus 118 ~L~refsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~ 176 (534)
+..-..+-+.+||++++++-+.. | =|.++++++|+++|..+..
T Consensus 123 ~~~~~~~~~Spdg~~la~~~s~~---------G-------~e~~~l~v~Dl~tg~~l~d 165 (414)
T PF02897_consen 123 YVSLGGFSVSPDGKRLAYSLSDG---------G-------SEWYTLRVFDLETGKFLPD 165 (414)
T ss_dssp -EEEEEEEETTTSSEEEEEEEET---------T-------SSEEEEEEEETTTTEEEEE
T ss_pred eEEeeeeeECCCCCEEEEEecCC---------C-------CceEEEEEEECCCCcCcCC
Confidence 44444555678999999864441 1 2779999999999986554
No 50
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=33.74 E-value=63 Score=37.21 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=57.7
Q ss_pred eecCCCc-eeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCc---ccc-------cCCC-----CCcccchhhhhhhe
Q 009465 43 DIECPDH-SFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKE---EDC-------CRHD-----LPPKAKRFESFFTQ 106 (534)
Q Consensus 43 ~Ve~P~~-~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~---~~~-------~~~~-----~~~r~~~F~~fF~~ 106 (534)
|.|-|.. -=-|-||||+|++|-.-=-..|.||.+--++.-.++ +|- ++.. ..-|.--|-.-.-.
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred hcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 4455643 345889999999999999999999999855533332 110 0000 01122334444556
Q ss_pred eeEEEcCCCCeeeeeeEEEEecCceEEEEEeec
Q 009465 107 LYSVTLASCNELICKDFFLSMEGNQFGLFATST 139 (534)
Q Consensus 107 ~~~~~l~~~~e~L~refsLft~dgryvivasa~ 139 (534)
+|.+.++.. +||+++=-..|.-.++||..
T Consensus 127 hy~~RIP~~----GRDm~y~~~scDly~~gsg~ 155 (703)
T KOG2321|consen 127 HYRTRIPKF----GRDMKYHKPSCDLYLVGSGS 155 (703)
T ss_pred eeeeecCcC----CccccccCCCccEEEeecCc
Confidence 777777664 56777766777777776544
No 51
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=33.42 E-value=19 Score=24.26 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=8.3
Q ss_pred eeeeeCCCCCe
Q 009465 50 SFRKFTDDGQY 60 (534)
Q Consensus 50 ~lrKFTpDG~~ 60 (534)
.+.-||||||-
T Consensus 4 ~~t~FSp~Grl 14 (23)
T PF10584_consen 4 SITTFSPDGRL 14 (23)
T ss_dssp STTSBBTTSSB
T ss_pred CceeECCCCeE
Confidence 34569999985
No 52
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=30.68 E-value=69 Score=24.67 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=23.0
Q ss_pred eeeCCCCC--eEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQ--YLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~--~LIaFS~dq~~L~vYry~ 77 (534)
.||||++- -|++|+-++--+.|+.-+
T Consensus 6 ~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 6 CKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred EEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 59998766 899999999999999877
No 53
>PTZ00421 coronin; Provisional
Probab=30.53 E-value=8.2e+02 Score=27.49 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=19.0
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|+|||+.|++=|.|. .|.||..+
T Consensus 174 la~spdG~lLatgs~Dg-~IrIwD~r 198 (493)
T PTZ00421 174 LEWNLDGSLLCTTSKDK-KLNIIDPR 198 (493)
T ss_pred EEEECCCCEEEEecCCC-EEEEEECC
Confidence 45889999888777665 57888876
No 54
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=29.47 E-value=64 Score=36.80 Aligned_cols=38 Identities=8% Similarity=0.336 Sum_probs=30.8
Q ss_pred EeeecCCCceeeeeCCCCCeEEEeeCC-----CceEEEEeecC
Q 009465 41 VYDIECPDHSFRKFTDDGQYLISFSRN-----HQDLIVYRPMW 78 (534)
Q Consensus 41 v~~Ve~P~~~lrKFTpDG~~LIaFS~d-----q~~L~vYry~g 78 (534)
|.+++++++.+..++|||+|++.=+=- ...+-||-|.|
T Consensus 349 i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 349 IAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 457888999999999999999875533 45688999985
No 55
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=28.72 E-value=1.3e+02 Score=32.50 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=43.1
Q ss_pred eecCCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeE---EEcCCCCee
Q 009465 43 DIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYS---VTLASCNEL 118 (534)
Q Consensus 43 ~Ve~P~~~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~---~~l~~~~e~ 118 (534)
+++.-..|=--||||+.+| |.|+|...|.|+.-++...+-. +....+....+-.+||..+|. ..|.++...
T Consensus 223 G~d~A~iy~iaFSp~~s~L-avsSdKgTlHiF~l~~~~~~~~----~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~ 296 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWL-AVSSDKGTLHIFSLRDTENTED----ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQC 296 (346)
T ss_pred CCchheEEEEEeCCCccEE-EEEcCCCeEEEEEeecCCCCcc----ccccccccccccchhcccceeEEEEEccCCCcE
Confidence 3444444545699999875 6789999999999996442222 111333333466667766543 556655433
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=27.25 E-value=3e+02 Score=29.64 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=56.2
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEe-ecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEe
Q 009465 49 HSFRKFTDDGQYLISFSRNHQDLIVYR-PMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSM 127 (534)
Q Consensus 49 ~~lrKFTpDG~~LIaFS~dq~~L~vYr-y~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft 127 (534)
.+--||+|||.+|+.=+.|++ +.+++ |. +|+ .|. .+....+ .... .=+|
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~-I~LWnv~g---------dce---------N~~-------~lkgHsg-AVM~---l~~~ 99 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRA-IVLWNVYG---------DCE---------NFW-------VLKGHSG-AVME---LHGM 99 (338)
T ss_pred EEEEEECCCCCeEeecCCcce-EEEEeccc---------ccc---------cee-------eeccccc-eeEe---eeec
Confidence 467899999999999988876 44454 43 332 111 1112222 1111 1256
Q ss_pred cCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEee
Q 009465 128 EGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLA 187 (534)
Q Consensus 128 ~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~Ls 187 (534)
.||+.++=+ ++ |-|+..+|.++|...=+..-+.++++.=
T Consensus 100 ~d~s~i~S~-gt--------------------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 100 RDGSHILSC-GT--------------------DKTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred cCCCEEEEe-cC--------------------CceEEEEecccceeeehhccccceeeec
Confidence 778776542 22 5689999999999888888888877654
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=27.06 E-value=2.8e+02 Score=26.15 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=15.2
Q ss_pred eEEEEEEEccCCeEeeeeeecc
Q 009465 160 KITFHLLRLEDGVVLDEKVFHN 181 (534)
Q Consensus 160 ~ytfhlVdL~~G~v~D~~~f~~ 181 (534)
+-.++.+|+++|.+.-+.....
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESST
T ss_pred cCcEEEEecCCCcEEEEeecCC
Confidence 4567788888887766666643
No 58
>PRK02889 tolB translocation protein TolB; Provisional
Probab=26.45 E-value=1.4e+02 Score=32.20 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=15.3
Q ss_pred eeCCCCCeEEEeeCCCceEEEEee
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRP 76 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry 76 (534)
.|||||++++..+.+...-.||.+
T Consensus 334 ~~SpDG~~Ia~~s~~~g~~~I~v~ 357 (427)
T PRK02889 334 RISPDGKLLAYISRVGGAFKLYVQ 357 (427)
T ss_pred EECCCCCEEEEEEccCCcEEEEEE
Confidence 589999998766655443334443
No 59
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=25.52 E-value=1.1e+03 Score=27.28 Aligned_cols=139 Identities=14% Similarity=0.228 Sum_probs=87.6
Q ss_pred ccccccccccCCCeeEeeecCCCc-eeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhh
Q 009465 26 HCARRFYENIVPSFTVYDIECPDH-SFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFF 104 (534)
Q Consensus 26 ~~~R~fYqni~P~~Tv~~Ve~P~~-~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF 104 (534)
.+...|-++..-+..|- |..|.- --+++.-|++.++-=..|...|.||.+.| ++. +.++.=+
T Consensus 339 SRGkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-------~e~---------kr~e~~l 401 (668)
T COG4946 339 SRGKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-------GEV---------KRIEKDL 401 (668)
T ss_pred ecCcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC-------ceE---------EEeeCCc
Confidence 33456777766666655 777754 47899999999999999999999999985 221 1233333
Q ss_pred heeeEEEcCCCCeeeeeeEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCe--Eeeee-----
Q 009465 105 TQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGV--VLDEK----- 177 (534)
Q Consensus 105 ~~~~~~~l~~~~e~L~refsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~--v~D~~----- 177 (534)
-..+.+-+. .||.+++||- .+..+++||+.+|. +.|+.
T Consensus 402 g~I~av~vs--------------~dGK~~vvaN---------------------dr~el~vididngnv~~idkS~~~lI 446 (668)
T COG4946 402 GNIEAVKVS--------------PDGKKVVVAN---------------------DRFELWVIDIDNGNVRLIDKSEYGLI 446 (668)
T ss_pred cceEEEEEc--------------CCCcEEEEEc---------------------CceEEEEEEecCCCeeEeccccccee
Confidence 333344333 4678888751 23558899999985 34432
Q ss_pred ---eeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCeEEEeeeeC
Q 009465 178 ---VFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 227 (534)
Q Consensus 178 ---~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG 227 (534)
+.+.+.=++|-. +- =+.-.|.||+|.+. .|+..++-|=-
T Consensus 447 tdf~~~~nsr~iAYa-----fP-----~gy~tq~Iklydm~-~~Kiy~vTT~t 488 (668)
T COG4946 447 TDFDWHPNSRWIAYA-----FP-----EGYYTQSIKLYDMD-GGKIYDVTTPT 488 (668)
T ss_pred EEEEEcCCceeEEEe-----cC-----cceeeeeEEEEecC-CCeEEEecCCc
Confidence 233333333311 00 23335999999998 48998887643
No 60
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=25.04 E-value=91 Score=33.80 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=20.8
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.||.||+||..-+.| ++++|+.-+
T Consensus 92 ~~FsSdGK~lat~~~D-r~Ir~w~~~ 116 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGD-RSIRLWDVR 116 (420)
T ss_pred eEEcCCCceeEEEeCC-ceEEEEecc
Confidence 3699999999998876 678888776
No 61
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.30 E-value=3.4e+02 Score=32.17 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=56.0
Q ss_pred CceeeeeCCCCCeEEEeeCCC----------ceEEEEeecCCCCC------cCccccc---CCCCCcccchhhhhhheee
Q 009465 48 DHSFRKFTDDGQYLISFSRNH----------QDLIVYRPMWLSFS------CKEEDCC---RHDLPPKAKRFESFFTQLY 108 (534)
Q Consensus 48 ~~~lrKFTpDG~~LIaFS~dq----------~~L~vYry~g~~~~------~~~~~~~---~~~~~~r~~~F~~fF~~~~ 108 (534)
|.|=.+|+||-+|||.=|-|. .-+++|+ |.... ++.|.++ ++|.++|-=..+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~------ 524 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH------ 524 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEec--CCCcceeeEEecCCceEEEecCCCceeeeeeccc------
Confidence 566679999999999999874 4566666 43311 0223221 3444443211111
Q ss_pred EEEcCC-CCeeeeeeEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeE
Q 009465 109 SVTLAS-CNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV 173 (534)
Q Consensus 109 ~~~l~~-~~e~L~refsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v 173 (534)
.-++-- -|+.=.=||..|-.|+-||-=||+ |=|.-+||..+|..
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs---------------------D~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSS---------------------DRTVRLWDVSTGNS 569 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCC---------------------CceEEEEEcCCCcE
Confidence 111111 123333478888888888765532 35678999999987
No 62
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=23.48 E-value=69 Score=21.87 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=16.8
Q ss_pred eeeCCCCCeEEEeeCCCceEEEE
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVY 74 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vY 74 (534)
=.|+|+|++|++=|.|. .|.||
T Consensus 17 i~~~~~~~~~~s~~~D~-~i~vw 38 (39)
T PF00400_consen 17 IAWSPDGNFLASGSSDG-TIRVW 38 (39)
T ss_dssp EEEETTSSEEEEEETTS-EEEEE
T ss_pred EEEecccccceeeCCCC-EEEEE
Confidence 36899999999999775 44554
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.09 E-value=45 Score=39.15 Aligned_cols=16 Identities=44% Similarity=0.779 Sum_probs=0.0
Q ss_pred eeCCCCCeEEEeeCCC
Q 009465 53 KFTDDGQYLISFSRNH 68 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq 68 (534)
|||+||+||..=+.|.
T Consensus 274 KFS~DGKyLAsaGeD~ 289 (712)
T KOG0283|consen 274 KFSHDGKYLASAGEDG 289 (712)
T ss_pred EeCCCCceeeecCCCc
No 64
>PTZ00420 coronin; Provisional
Probab=21.57 E-value=1.3e+03 Score=26.70 Aligned_cols=27 Identities=7% Similarity=0.053 Sum_probs=20.7
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
--.|+|+|.+++|-+..-..|.||...
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 347999999887765555788888876
No 65
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.52 E-value=3.6e+02 Score=29.26 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=62.7
Q ss_pred eeeEEEcCCC-C--eeeeeeEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeec-c
Q 009465 106 QLYSVTLASC-N--ELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH-N 181 (534)
Q Consensus 106 ~~~~~~l~~~-~--e~L~refsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~-~ 181 (534)
.+..+.++.. . -...+=-.-++.||||++|.-+||. -+..+|||+.+++..+.... |
T Consensus 79 ~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa-------------------~SVtVVDl~~~kvv~ei~~PGC 139 (342)
T PF06433_consen 79 PTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA-------------------TSVTVVDLAAKKVVGEIDTPGC 139 (342)
T ss_dssp EEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS-------------------EEEEEEETTTTEEEEEEEGTSE
T ss_pred ccceEecCCcchheecccccceEEccCCcEEEEEccCCC-------------------CeEEEEECCCCceeeeecCCCE
Confidence 3444555543 1 1123334456789999999988842 24889999999998877765 4
Q ss_pred ceEEeeecceee-eecceeeeeeecccEEEEEEEccCCeEEEeeeeCCccCcchHHHHhhc
Q 009465 182 DFINLAHNMGVF-LYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISN 241 (534)
Q Consensus 182 D~I~LsHN~Gv~-L~~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG~fc~eDD~l~~~~~ 241 (534)
=-|+-+-|+|.+ |.+|= .+++ +.+.++|+....++ --|=.+||.++....
T Consensus 140 ~~iyP~~~~~F~~lC~DG-sl~~--------v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~ 190 (342)
T PF06433_consen 140 WLIYPSGNRGFSMLCGDG-SLLT--------VTLDADGKEAQKST-KVFDPDDDPLFEHPA 190 (342)
T ss_dssp EEEEEEETTEEEEEETTS-CEEE--------EEETSTSSEEEEEE-EESSTTTS-B-S--E
T ss_pred EEEEecCCCceEEEecCC-ceEE--------EEECCCCCEeEeec-cccCCCCcccccccc
Confidence 455666667755 33331 2222 24577899884333 455557777777654
No 66
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=20.92 E-value=89 Score=33.84 Aligned_cols=24 Identities=17% Similarity=0.481 Sum_probs=22.6
Q ss_pred eCCCCCeEEEeeCCCceEEEEeec
Q 009465 54 FTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 54 FTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
|+|+|++|||-.+|...|.||+=-
T Consensus 298 i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 298 INPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred eCCCCCEEEEEccCCCcEEEEEEc
Confidence 689999999999999999999976
Done!