Query 009465
Match_columns 534
No_of_seqs 74 out of 76
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3scy_A Hypothetical bacterial 93.7 4.3 0.00015 39.0 18.3 133 52-226 160-302 (361)
2 3u4y_A Uncharacterized protein 93.1 1.3 4.4E-05 41.7 13.2 125 52-228 133-263 (331)
3 3u4y_A Uncharacterized protein 92.9 0.76 2.6E-05 43.3 11.3 115 53-216 182-304 (331)
4 3hfq_A Uncharacterized protein 92.6 5.8 0.0002 37.7 17.1 131 52-226 146-281 (347)
5 3hfq_A Uncharacterized protein 92.3 4.3 0.00015 38.6 15.8 131 53-228 193-330 (347)
6 3scy_A Hypothetical bacterial 91.9 5 0.00017 38.5 15.9 127 53-224 217-346 (361)
7 1ri6_A Putative isomerase YBHE 91.0 5.4 0.00018 37.1 14.6 121 52-224 43-168 (343)
8 1l0q_A Surface layer protein; 90.9 5.2 0.00018 38.5 14.8 119 52-227 37-157 (391)
9 1jof_A Carboxy-CIS,CIS-muconat 89.6 4.9 0.00017 39.2 13.6 127 53-217 199-342 (365)
10 2vdu_B TRNA (guanine-N(7)-)-me 89.6 5.9 0.0002 39.7 14.4 124 53-227 202-352 (450)
11 1ri6_A Putative isomerase YBHE 89.6 6.5 0.00022 36.5 13.8 128 53-226 184-319 (343)
12 3vgz_A Uncharacterized protein 89.3 9.4 0.00032 35.7 14.9 77 124-228 236-314 (353)
13 1l0q_A Surface layer protein; 88.5 10 0.00035 36.4 14.8 114 52-222 121-238 (391)
14 2j04_A TAU60, YPL007P, hypothe 88.5 3.4 0.00012 45.6 12.6 122 52-227 135-263 (588)
15 1xfd_A DIP, dipeptidyl aminope 86.4 7.7 0.00026 41.1 13.5 26 52-77 178-203 (723)
16 1jof_A Carboxy-CIS,CIS-muconat 86.3 10 0.00034 37.0 13.4 138 48-226 42-186 (365)
17 1nir_A Nitrite reductase; hemo 86.3 6.4 0.00022 41.7 12.9 81 50-179 182-266 (543)
18 2hqs_A Protein TOLB; TOLB, PAL 85.7 13 0.00045 37.3 14.4 32 124-173 316-347 (415)
19 2gop_A Trilobed protease; beta 85.3 24 0.00083 33.2 15.2 50 124-173 109-164 (347)
20 4ery_A WD repeat-containing pr 84.9 15 0.00051 34.3 13.4 117 47-214 193-310 (312)
21 3vgz_A Uncharacterized protein 84.8 25 0.00087 32.7 15.3 125 53-228 95-226 (353)
22 2ecf_A Dipeptidyl peptidase IV 82.7 14 0.00046 39.4 13.5 74 121-219 290-370 (741)
23 4h5i_A Guanine nucleotide-exch 81.9 40 0.0014 32.9 16.1 26 52-77 139-165 (365)
24 4a11_B DNA excision repair pro 81.7 12 0.00041 35.5 11.4 27 52-78 192-218 (408)
25 2ojh_A Uncharacterized protein 81.5 27 0.00093 31.0 13.2 70 125-218 135-206 (297)
26 2z3z_A Dipeptidyl aminopeptida 81.1 30 0.001 36.6 15.3 32 124-171 263-294 (706)
27 2ojh_A Uncharacterized protein 80.7 11 0.00037 33.7 10.2 84 52-173 178-261 (297)
28 4h5i_A Guanine nucleotide-exch 80.2 28 0.00096 34.1 13.9 36 42-78 11-52 (365)
29 3bws_A Protein LP49; two-domai 79.7 46 0.0016 32.2 16.5 121 53-215 309-431 (433)
30 2aq5_A Coronin-1A; WD40 repeat 79.4 35 0.0012 33.2 14.2 121 51-225 181-309 (402)
31 3lrv_A PRE-mRNA-splicing facto 78.5 20 0.00069 34.2 12.0 118 51-219 175-295 (343)
32 3vu4_A KMHSV2; beta-propeller 78.0 24 0.00083 34.2 12.5 47 162-216 82-128 (355)
33 3fm0_A Protein CIAO1; WDR39,SG 77.9 34 0.0012 32.9 13.5 29 48-77 18-46 (345)
34 3azo_A Aminopeptidase; POP fam 77.0 17 0.00058 38.1 11.8 35 125-172 194-229 (662)
35 3azo_A Aminopeptidase; POP fam 76.8 27 0.00094 36.5 13.3 81 124-219 135-229 (662)
36 1pby_B Quinohemoprotein amine 76.5 46 0.0016 30.5 13.8 128 53-227 40-173 (337)
37 1nir_A Nitrite reductase; hemo 76.3 36 0.0012 36.0 14.2 25 53-77 228-256 (543)
38 1r5m_A SIR4-interacting protei 76.0 51 0.0017 31.2 13.9 24 51-75 113-136 (425)
39 3mkq_A Coatomer beta'-subunit; 75.8 19 0.00066 38.3 12.0 50 159-214 449-502 (814)
40 3bws_A Protein LP49; two-domai 75.1 62 0.0021 31.3 16.8 121 53-223 218-340 (433)
41 3dw8_B Serine/threonine-protei 75.0 18 0.00063 35.1 10.7 28 48-77 287-314 (447)
42 1k32_A Tricorn protease; prote 75.0 28 0.00094 39.5 13.6 18 50-67 56-73 (1045)
43 3fm0_A Protein CIAO1; WDR39,SG 74.8 25 0.00086 33.8 11.6 25 52-77 67-91 (345)
44 3pe7_A Oligogalacturonate lyas 74.3 39 0.0013 32.2 12.7 37 125-182 87-123 (388)
45 3mmy_A MRNA export factor; mRN 74.1 55 0.0019 30.2 13.8 51 160-217 150-200 (368)
46 4a5s_A Dipeptidyl peptidase 4 74.1 12 0.00043 40.5 10.1 25 53-77 177-201 (740)
47 1qks_A Cytochrome CD1 nitrite 73.7 35 0.0012 36.7 13.5 103 53-177 246-380 (567)
48 2ynn_A Coatomer subunit beta'; 73.4 24 0.00083 33.2 10.8 108 52-216 19-128 (304)
49 2vdu_B TRNA (guanine-N(7)-)-me 72.8 27 0.00092 34.8 11.6 27 51-77 107-133 (450)
50 3vu4_A KMHSV2; beta-propeller 72.7 47 0.0016 32.1 13.1 27 51-77 200-226 (355)
51 3o4h_A Acylamino-acid-releasin 72.7 8.6 0.00029 39.9 8.1 33 123-174 199-231 (582)
52 2pm7_B Protein transport prote 72.5 33 0.0011 32.1 11.6 24 53-77 16-39 (297)
53 4aow_A Guanine nucleotide-bind 72.0 61 0.0021 29.8 13.2 24 53-77 222-245 (340)
54 3zwl_B Eukaryotic translation 71.3 64 0.0022 29.8 15.5 111 51-216 37-151 (369)
55 1sq9_A Antiviral protein SKI8; 71.2 56 0.0019 31.0 12.9 27 51-77 238-266 (397)
56 1qks_A Cytochrome CD1 nitrite 70.9 67 0.0023 34.6 14.8 32 196-228 353-385 (567)
57 3pe7_A Oligogalacturonate lyas 70.5 55 0.0019 31.1 12.7 34 125-174 244-277 (388)
58 3c5m_A Oligogalacturonate lyas 69.0 13 0.00043 35.5 7.8 14 160-173 319-332 (396)
59 3ow8_A WD repeat-containing pr 68.9 49 0.0017 31.6 12.1 112 52-221 170-283 (321)
60 4ery_A WD repeat-containing pr 68.8 70 0.0024 29.6 12.8 43 466-518 256-298 (312)
61 1erj_A Transcriptional repress 68.5 81 0.0028 30.8 13.8 25 52-77 262-286 (393)
62 1jmx_B Amine dehydrogenase; ox 66.4 78 0.0027 29.2 12.6 133 54-227 155-335 (349)
63 2bkl_A Prolyl endopeptidase; m 65.2 55 0.0019 35.1 12.7 57 160-219 294-352 (695)
64 2hqs_A Protein TOLB; TOLB, PAL 64.8 26 0.0009 35.1 9.6 33 123-173 358-390 (415)
65 1erj_A Transcriptional repress 64.7 1.1E+02 0.0037 29.9 14.9 113 52-221 129-242 (393)
66 2mad_H Methylamine dehydrogena 63.2 1.3E+02 0.0043 30.1 15.5 60 162-228 299-362 (373)
67 3gre_A Serine/threonine-protei 63.1 1.1E+02 0.0039 29.6 15.0 129 52-223 117-251 (437)
68 2ecf_A Dipeptidyl peptidase IV 62.3 48 0.0017 35.1 11.5 28 51-78 41-73 (741)
69 2xdw_A Prolyl endopeptidase; a 61.9 1E+02 0.0035 33.0 14.1 76 125-220 292-371 (710)
70 2pbi_B Guanine nucleotide-bind 61.1 1.2E+02 0.0041 29.2 14.0 28 49-77 67-94 (354)
71 3sfz_A APAF-1, apoptotic pepti 59.6 1.4E+02 0.0048 33.8 15.2 25 52-77 663-687 (1249)
72 3mkq_A Coatomer beta'-subunit; 58.9 1.1E+02 0.0037 32.5 13.5 111 53-221 20-133 (814)
73 3sfz_A APAF-1, apoptotic pepti 58.4 1.1E+02 0.0037 34.7 14.1 60 159-225 721-782 (1249)
74 1yr2_A Prolyl oligopeptidase; 58.1 1.8E+02 0.006 31.5 15.2 71 127-219 324-396 (741)
75 4gqb_B Methylosome protein 50; 58.0 72 0.0025 31.1 11.2 15 52-66 36-50 (344)
76 3ow8_A WD repeat-containing pr 58.0 37 0.0013 32.4 8.9 25 52-77 212-236 (321)
77 1gxr_A ESG1, transducin-like e 56.5 1.2E+02 0.004 27.6 14.9 55 160-220 204-258 (337)
78 2iwa_A Glutamine cyclotransfer 56.3 11 0.00038 37.1 4.8 73 162-239 45-122 (266)
79 4g56_B MGC81050 protein; prote 56.0 36 0.0012 33.1 8.5 25 53-77 233-257 (357)
80 3vl1_A 26S proteasome regulato 55.1 1.3E+02 0.0044 28.8 12.2 25 52-77 145-169 (420)
81 2ymu_A WD-40 repeat protein; u 54.8 23 0.00078 36.0 7.1 24 53-77 515-538 (577)
82 3dw8_B Serine/threonine-protei 54.3 54 0.0018 31.7 9.4 25 51-77 182-206 (447)
83 2xdw_A Prolyl endopeptidase; a 53.9 1E+02 0.0036 32.9 12.5 31 124-170 238-268 (710)
84 3o4h_A Acylamino-acid-releasin 53.6 2E+02 0.0068 29.5 14.2 30 49-78 24-53 (582)
85 1pgu_A Actin interacting prote 53.1 1.2E+02 0.0041 30.6 12.1 120 51-225 165-291 (615)
86 4ggc_A P55CDC, cell division c 53.0 1.3E+02 0.0045 27.2 14.7 105 53-214 32-136 (318)
87 4e54_B DNA damage-binding prot 50.5 78 0.0027 31.3 10.1 26 52-77 256-281 (435)
88 4gqb_B Methylosome protein 50; 50.3 66 0.0023 31.4 9.4 24 53-77 134-157 (344)
89 3zwl_B Eukaryotic translation 49.9 1.6E+02 0.0053 27.1 15.2 129 51-223 120-255 (369)
90 4a11_B DNA excision repair pro 49.4 1.7E+02 0.0058 27.4 12.6 29 49-78 46-75 (408)
91 3iuj_A Prolyl endopeptidase; h 49.0 1.4E+02 0.0048 32.1 12.6 55 160-219 304-360 (693)
92 1pgu_A Actin interacting prote 47.4 2.3E+02 0.008 28.4 14.1 113 51-221 211-332 (615)
93 1gxr_A ESG1, transducin-like e 47.0 1.7E+02 0.0057 26.6 14.5 26 50-77 55-80 (337)
94 3ei3_B DNA damage-binding prot 46.1 95 0.0032 29.6 9.6 51 159-215 328-381 (383)
95 1got_B GT-beta; complex (GTP-b 44.9 1.6E+02 0.0054 28.0 11.0 26 51-77 102-127 (340)
96 1vyh_C Platelet-activating fac 43.8 1.4E+02 0.0047 29.4 10.7 43 467-519 358-400 (410)
97 2aq5_A Coronin-1A; WD40 repeat 43.7 2.3E+02 0.0078 27.3 13.8 125 51-228 225-353 (402)
98 3f3f_A Nucleoporin SEH1; struc 43.4 1.8E+02 0.0063 26.1 14.2 25 52-77 17-41 (351)
99 2z3z_A Dipeptidyl aminopeptida 43.1 74 0.0025 33.5 9.0 32 124-172 406-437 (706)
100 3vl1_A 26S proteasome regulato 42.9 2.3E+02 0.0078 27.0 12.3 26 51-77 252-277 (420)
101 3dsm_A Uncharacterized protein 42.7 1.9E+02 0.0066 27.6 11.3 119 53-227 178-311 (328)
102 2ece_A 462AA long hypothetical 42.7 81 0.0028 33.8 9.2 106 53-189 327-446 (462)
103 3gre_A Serine/threonine-protei 42.6 77 0.0027 30.8 8.5 24 53-77 221-244 (437)
104 3i2n_A WD repeat-containing pr 42.4 66 0.0023 29.7 7.6 28 51-78 264-291 (357)
105 3dwl_C Actin-related protein 2 41.9 1.6E+02 0.0056 27.6 10.5 24 53-77 153-176 (377)
106 1k32_A Tricorn protease; prote 41.4 97 0.0033 35.0 10.2 39 124-173 426-464 (1045)
107 1vyh_C Platelet-activating fac 41.3 1.4E+02 0.0048 29.4 10.3 25 52-77 114-138 (410)
108 3jro_A Fusion protein of prote 40.5 1.4E+02 0.0049 32.4 11.0 25 52-77 15-39 (753)
109 1k8k_C P40, ARP2/3 complex 41 39.6 2.3E+02 0.008 26.2 13.7 27 51-78 101-127 (372)
110 3mbr_X Glutamine cyclotransfer 38.8 76 0.0026 30.9 7.6 61 162-227 44-104 (243)
111 3dm0_A Maltose-binding peripla 38.0 3.3E+02 0.011 28.8 13.1 141 53-222 479-637 (694)
112 4aez_A CDC20, WD repeat-contai 37.9 2.8E+02 0.0097 26.7 14.1 122 52-226 223-345 (401)
113 3sjl_D Methylamine dehydrogena 37.8 95 0.0032 32.1 8.6 39 123-180 141-179 (386)
114 4g56_B MGC81050 protein; prote 37.6 21 0.00072 34.8 3.5 17 53-69 49-65 (357)
115 3jrp_A Fusion protein of prote 36.4 2.6E+02 0.0089 25.8 13.1 32 196-228 268-299 (379)
116 2oaj_A Protein SNI1; WD40 repe 35.0 3.6E+02 0.012 30.2 13.5 26 50-78 580-605 (902)
117 4ggc_A P55CDC, cell division c 33.6 2.7E+02 0.0091 25.1 12.3 28 49-77 153-180 (318)
118 2ynn_A Coatomer subunit beta'; 32.7 3E+02 0.01 25.4 12.5 104 51-205 189-301 (304)
119 1nr0_A Actin interacting prote 32.0 2.8E+02 0.0095 29.0 11.3 26 51-77 64-89 (611)
120 1pby_B Quinohemoprotein amine 31.8 2.9E+02 0.0099 25.0 10.1 84 124-228 39-135 (337)
121 3v7d_B Cell division control p 31.1 3.8E+02 0.013 26.1 14.2 25 52-77 316-340 (464)
122 4aow_A Guanine nucleotide-bind 30.1 36 0.0012 31.4 3.6 25 52-77 312-336 (340)
123 3frx_A Guanine nucleotide-bind 30.0 35 0.0012 32.3 3.6 25 52-77 292-316 (319)
124 2w18_A PALB2, fancn, partner a 29.8 34 0.0012 35.4 3.6 24 52-76 332-355 (356)
125 3nol_A Glutamine cyclotransfer 29.5 1.1E+02 0.0037 30.2 7.1 61 162-227 66-126 (262)
126 3lrv_A PRE-mRNA-splicing facto 29.1 42 0.0014 32.0 4.0 26 52-77 266-291 (343)
127 4gga_A P55CDC, cell division c 28.8 4.1E+02 0.014 25.8 12.3 29 48-77 232-260 (420)
128 3dr2_A Exported gluconolactona 27.8 3.7E+02 0.013 24.9 14.6 154 54-225 93-295 (305)
129 4gq1_A NUP37; propeller, trans 27.2 36 0.0012 33.5 3.2 26 53-80 366-391 (393)
130 3elq_A Arylsulfate sulfotransf 26.0 1.6E+02 0.0055 32.3 8.3 119 98-229 229-394 (571)
131 1sq9_A Antiviral protein SKI8; 25.4 4.2E+02 0.014 24.8 15.6 80 123-222 238-327 (397)
132 4aez_A CDC20, WD repeat-contai 25.1 4.6E+02 0.016 25.1 13.7 115 49-219 94-208 (401)
133 1r5m_A SIR4-interacting protei 25.1 44 0.0015 31.7 3.3 28 50-78 398-425 (425)
134 3v7d_B Cell division control p 24.0 5E+02 0.017 25.2 12.3 110 50-216 272-381 (464)
135 1yr2_A Prolyl oligopeptidase; 23.5 2.3E+02 0.0078 30.6 8.9 35 125-175 169-203 (741)
136 3i2n_A WD repeat-containing pr 22.8 67 0.0023 29.7 4.0 27 51-77 23-52 (357)
137 2ymu_A WD-40 repeat protein; u 21.7 59 0.002 32.9 3.6 25 53-78 64-88 (577)
138 2xdp_A Lysine-specific demethy 21.2 1.1E+02 0.0036 27.3 4.7 64 157-223 29-106 (123)
139 1nr0_A Actin interacting prote 20.8 7.1E+02 0.024 25.8 15.0 26 51-76 152-177 (611)
No 1
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.74 E-value=4.3 Score=39.01 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=74.2
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
-.|+|||++|++-+.....+.||+....+.... .+ ..... ...-...+..+.. . + ...|..||+
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~-~~----~l~~~--------~~~~~~~~~~~~~-~-~-~~~~spdg~ 223 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADN-KE----KFLTK--------GTPEAFKVAPGSG-P-R-HLIFNSDGK 223 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTT-CC----CCEEE--------EEEEEEECCTTCC-E-E-EEEECTTSS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCccc-cc----ceeec--------ccccceecCCCCC-C-e-EEEEcCCCC
Confidence 479999999988887778899998862110000 00 00000 0001112222221 1 1 356789999
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccc--------eEEeeecceeeeecceeeeee
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND--------FINLAHNMGVFLYDDLLAIVS 203 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D--------~I~LsHN~Gv~L~~dlLAILS 203 (534)
++.+++.. +=++.++|+.+|.+.-...+... -|.++.+ +..|++..
T Consensus 224 ~l~v~~~~--------------------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd------g~~l~v~~ 277 (361)
T 3scy_A 224 FAYLINEI--------------------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD------GKYLYASN 277 (361)
T ss_dssp EEEEEETT--------------------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT------SSEEEEEE
T ss_pred EEEEEcCC--------------------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC------CCEEEEEC
Confidence 98886422 12478889989976433333221 2333332 33455655
Q ss_pred ec-ccEEEEEEEc-cCCeEEEeeee
Q 009465 204 LR-YQTIHILQVR-DLGNLVDVRTI 226 (534)
Q Consensus 204 ~q-~QtIhi~qI~-~~G~fv~vrtI 226 (534)
.. .-+|.||.+. .+|++..+..+
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 55 6899999996 46887666554
No 2
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.10 E-value=1.3 Score=41.68 Aligned_cols=125 Identities=10% Similarity=0.063 Sum_probs=73.6
Q ss_pred eeeCCCCCeEEEeeCCCce-EEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCc
Q 009465 52 RKFTDDGQYLISFSRNHQD-LIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGN 130 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~-L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dg 130 (534)
-.|+|||++|++-+.+... +.+|+....+ . +. ... ...+..+... ...-|..||
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g------~-----------~~----~~~-~~~~~~~~~~---~~~~~spdg 187 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADG------V-----------LF----DTG-QEFISGGTRP---FNITFTPDG 187 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTC------C-----------EE----EEE-EEEECSSSSE---EEEEECTTS
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCC------c-----------Ee----ecC-CccccCCCCc---cceEECCCC
Confidence 3699999988877777566 9999986211 0 00 010 0111222221 345678899
Q ss_pred eEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeE---eeeeeeccceEEeeecceeeee--cceeeeeeec
Q 009465 131 QFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV---LDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLR 205 (534)
Q Consensus 131 ryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v---~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q 205 (534)
+++++++.. +-+++++|+++|.+ ..... .. ..-.++.+. +..|.+.+-.
T Consensus 188 ~~l~v~~~~--------------------~~~v~v~d~~~~~~~~~~~~~~--~~----~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 188 NFAFVANLI--------------------GNSIGILETQNPENITLLNAVG--TN----NLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp SEEEEEETT--------------------TTEEEEEECSSTTSCEEEEEEE--CS----SCCCCEEECTTSSEEEEECSS
T ss_pred CEEEEEeCC--------------------CCeEEEEECCCCcccceeeecc--CC----CCCceEEECCCCCEEEEEEcC
Confidence 998886432 12588999999987 43332 21 122244444 3456666666
Q ss_pred ccEEEEEEEccCCeEEEeeeeCC
Q 009465 206 YQTIHILQVRDLGNLVDVRTIGS 228 (534)
Q Consensus 206 ~QtIhi~qI~~~G~fv~vrtIG~ 228 (534)
.-+|+++.+. +|+...+.++..
T Consensus 242 ~~~i~~~d~~-~~~~~~~~~~~~ 263 (331)
T 3u4y_A 242 TVDVFNFNQL-SGTLSFVKSFGH 263 (331)
T ss_dssp EEEEEEEETT-TTEEEEEEEEEC
T ss_pred CCEEEEEECC-CCceeeeccccc
Confidence 7788988866 588866666544
No 3
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=92.93 E-value=0.76 Score=43.30 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=67.2
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceE
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgry 132 (534)
.|+|||++|++-+.....|.||+..... . .+....+.. ++.. ....|..||++
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~-------------~---------~~~~~~~~~--~~~~---~~~~~spdg~~ 234 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPE-------------N---------ITLLNAVGT--NNLP---GTIVVSRDGST 234 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTT-------------S---------CEEEEEEEC--SSCC---CCEEECTTSSE
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCc-------------c---------cceeeeccC--CCCC---ceEEECCCCCE
Confidence 5899999988888878888888865100 0 001122221 1111 13457889999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccc------eEEeeecceeee--ecceeeeeee
Q 009465 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND------FINLAHNMGVFL--YDDLLAIVSL 204 (534)
Q Consensus 133 vivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D------~I~LsHN~Gv~L--~~dlLAILS~ 204 (534)
+.+++.. +=+++++|+++|.+.--..+... .+..+ .++.+ -+..|+|-+-
T Consensus 235 l~v~~~~--------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 235 VYVLTES--------------------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA--NQMALNKTETKLFISAN 292 (331)
T ss_dssp EEEECSS--------------------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC--CCEEECTTSSEEEEEET
T ss_pred EEEEEcC--------------------CCEEEEEECCCCceeeecccccccccCCCCcccc--cceEECCCCCEEEEecC
Confidence 8885432 22488899999998333222221 00000 11222 2456777777
Q ss_pred cccEEEEEEEcc
Q 009465 205 RYQTIHILQVRD 216 (534)
Q Consensus 205 q~QtIhi~qI~~ 216 (534)
...+|.|+.+..
T Consensus 293 ~~~~v~v~d~~~ 304 (331)
T 3u4y_A 293 ISRELKVFTISG 304 (331)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCcEEEEEecC
Confidence 778999999863
No 4
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=92.59 E-value=5.8 Score=37.73 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=68.0
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
=.|+|||+ |++-+.....+.+|+... + +.. +..-...+..+... + ..-|..||+
T Consensus 146 ~~~spdg~-l~v~~~~~~~v~~~~~~~-~-----g~~----------------~~~~~~~~~~g~~p--~-~~~~spdg~ 199 (347)
T 3hfq_A 146 TDLTPDNR-LAVIDLGSDKVYVYNVSD-A-----GQL----------------SEQSVLTMEAGFGP--R-HLVFSPDGQ 199 (347)
T ss_dssp EEECTTSC-EEEEETTTTEEEEEEECT-T-----SCE----------------EEEEEEECCTTCCE--E-EEEECTTSS
T ss_pred EEECCCCc-EEEEeCCCCEEEEEEECC-C-----CcE----------------EEeeeEEcCCCCCC--c-eEEECCCCC
Confidence 36899999 766666677888887751 0 100 01111122222111 1 256789999
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceE---Eeeecceeeee--cceeeeeeecc
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFI---NLAHNMGVFLY--DDLLAIVSLRY 206 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I---~LsHN~Gv~L~--~dlLAILS~q~ 206 (534)
++++++... ..+.++-++..+|.+.-...+....- ....-.++.+- +..|.|.+-..
T Consensus 200 ~l~v~~~~~------------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~ 261 (347)
T 3hfq_A 200 YAFLAGELS------------------SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY 261 (347)
T ss_dssp EEEEEETTT------------------TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT
T ss_pred EEEEEeCCC------------------CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC
Confidence 988854330 12334434444677543332221100 00001123232 33566777778
Q ss_pred cEEEEEEEccCCeEEEeeee
Q 009465 207 QTIHILQVRDLGNLVDVRTI 226 (534)
Q Consensus 207 QtIhi~qI~~~G~fv~vrtI 226 (534)
.+|.+|.+.++|.+..+.++
T Consensus 262 ~~v~v~~~~~~g~~~~~~~~ 281 (347)
T 3hfq_A 262 NTLAVFAVTADGHLTLIQQI 281 (347)
T ss_dssp TEEEEEEECGGGCEEEEEEE
T ss_pred CEEEEEEECCCCcEEEeEEE
Confidence 89999999877876666554
No 5
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=92.32 E-value=4.3 Score=38.65 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=74.6
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCC---eeeeeeEEEEecC
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCN---ELICKDFFLSMEG 129 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~---e~L~refsLft~d 129 (534)
.|+|||++|++-+.....+.||++...+ +. ++....+.....+ ..-. .-..|..|
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~-----g~----------------~~~~~~~~~~~~~~~~~~~~-~~i~~spd 250 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQT-----GA----------------FTQLGIVKTIPADYTAHNGA-AAIRLSHD 250 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTT-----TE----------------EEEEEEEESSCTTCCSCCEE-EEEEECTT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCC-----Cc----------------eEEeeeeeecCCCCCCCCcc-eeEEECCC
Confidence 6999999998888888899999887311 00 0011111111111 0111 13457899
Q ss_pred ceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEcc-CCeEeeeeeeccceEEeeecceeeee--cceeeeeeecc
Q 009465 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLE-DGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRY 206 (534)
Q Consensus 130 gryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~-~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~ 206 (534)
|+++.++... +=++.++|+. +|.+.-...+... -..-.++.+- +..|++-+-..
T Consensus 251 G~~l~v~~~~--------------------~~~v~v~~~~~~g~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 251 GHFLYVSNRG--------------------YNTLAVFAVTADGHLTLIQQISTE---GDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp SCEEEEEEET--------------------TTEEEEEEECGGGCEEEEEEEECS---SSCCCEEEECTTSSEEEEEETTT
T ss_pred CCEEEEEeCC--------------------CCEEEEEEECCCCcEEEeEEEecC---CCCcCeEEECCCCCEEEEEEcCC
Confidence 9998875432 1146777775 4533222222210 0112244444 44677777777
Q ss_pred cEEEEEEEc-cCCeEEEeeeeCC
Q 009465 207 QTIHILQVR-DLGNLVDVRTIGS 228 (534)
Q Consensus 207 QtIhi~qI~-~~G~fv~vrtIG~ 228 (534)
.+|.+|.+. ++|++..+...+.
T Consensus 308 ~~v~v~~~d~~tg~l~~~~~~~~ 330 (347)
T 3hfq_A 308 DNATLYARDLTSGKLSLLQKDVT 330 (347)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEE
T ss_pred CcEEEEEEeCCCCeEEeccccee
Confidence 899999996 4689888876543
No 6
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=91.93 E-value=5 Score=38.52 Aligned_cols=127 Identities=12% Similarity=0.144 Sum_probs=70.0
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceE
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgry 132 (534)
.|+|||++|.+-+.....|.||++.. +.. +....+.....+..-. -..-|..||++
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~-------g~~----------------~~~~~~~~~~~~~~~~-~~i~~spdg~~ 272 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYAD-------GML----------------DEIQTVAADTVNAQGS-GDIHLSPDGKY 272 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEET-------TEE----------------EEEEEEESCSSCCCCE-EEEEECTTSSE
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecC-------Cce----------------EEeEEEecCCCCCCCc-ccEEECCCCCE
Confidence 69999999888887778899998861 100 0111111111110001 13457899999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeeecccEEE
Q 009465 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTIH 210 (534)
Q Consensus 133 vivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtIh 210 (534)
+.++.... -..+.++-+|.++|.+.-...+... ..-.++.+- +..|++-+-..-+|.
T Consensus 273 l~v~~~~~-----------------~~~i~v~~~~~~~g~~~~~~~~~~g----~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 273 LYASNRLK-----------------ADGVAIFKVDETNGTLTKVGYQLTG----IHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp EEEEECSS-----------------SCEEEEEEECTTTCCEEEEEEEECS----SCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred EEEECCCC-----------------CCEEEEEEEcCCCCcEEEeeEecCC----CCCceEEECCCCCEEEEEECCCCCEE
Confidence 87743220 1123444444467875433333321 111234443 446777776778999
Q ss_pred EEEEc-cCCeEEEee
Q 009465 211 ILQVR-DLGNLVDVR 224 (534)
Q Consensus 211 i~qI~-~~G~fv~vr 224 (534)
+|.+. .+|++..+.
T Consensus 332 v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 332 IFERDQATGLLTDIK 346 (361)
T ss_dssp EEEECTTTCCEEECS
T ss_pred EEEEECCCCcEeecc
Confidence 99996 468876654
No 7
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=91.01 E-value=5.4 Score=37.06 Aligned_cols=121 Identities=21% Similarity=0.182 Sum_probs=69.6
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
=.|+|||++|++-+.+...|.+|.....+ +. .+..-.+.. ++ . =...-|..||+
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~-----~~----------------~~~~~~~~~--~~-~--~~~~~~s~dg~ 96 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDD-----GA----------------LTFAAESAL--PG-S--LTHISTDHQGQ 96 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTT-----CC----------------EEEEEEEEC--SS-C--CSEEEECTTSS
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCC-----Cc----------------eeecccccc--CC-C--CcEEEEcCCCC
Confidence 36999999999999887899999875100 10 001111111 11 1 12344678999
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCe---EeeeeeeccceEEeeecceeeee--cceeeeeeecc
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGV---VLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRY 206 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~---v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~ 206 (534)
++++++.. +=++.++|+.+|. +.... ... .+-.++.+- +..|++-+...
T Consensus 97 ~l~~~~~~--------------------~~~i~~~d~~~~~~~~~~~~~--~~~----~~~~~~~~s~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 97 FVFVGSYN--------------------AGNVSVTRLEDGLPVGVVDVV--EGL----DGCHSANISPDNRTLWVPALKQ 150 (343)
T ss_dssp EEEEEETT--------------------TTEEEEEEEETTEEEEEEEEE--CCC----TTBCCCEECTTSSEEEEEEGGG
T ss_pred EEEEEecC--------------------CCeEEEEECCCCccccccccc--cCC----CCceEEEECCCCCEEEEecCCC
Confidence 98876432 1247778885553 22221 111 112233333 34677777677
Q ss_pred cEEEEEEEccCCeEEEee
Q 009465 207 QTIHILQVRDLGNLVDVR 224 (534)
Q Consensus 207 QtIhi~qI~~~G~fv~vr 224 (534)
.+|++|.+..+|++..+.
T Consensus 151 ~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp TEEEEEEECTTSCEEEEE
T ss_pred CEEEEEEecCCCceeeec
Confidence 899999998668776544
No 8
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=90.94 E-value=5.2 Score=38.50 Aligned_cols=119 Identities=9% Similarity=0.093 Sum_probs=71.9
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
-.|+|||++|++-+.....|.+|.... ++ ....+.. ++ .+ -..-|..||+
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~-------~~------------------~~~~~~~--~~-~v--~~~~~spdg~ 86 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTAT-------NN------------------VIATVPA--GS-SP--QGVAVSPDGK 86 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTT-------TE------------------EEEEEEC--SS-SE--EEEEECTTSS
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCC-------Ce------------------EEEEEEC--CC-Cc--cceEECCCCC
Confidence 369999999876665566788877641 10 1111111 11 11 2445778999
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeeecccEE
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTI 209 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtI 209 (534)
++++++.. +-+++++|+.+|.+.......... .++.+. +..|++..-...+|
T Consensus 87 ~l~~~~~~--------------------~~~v~v~d~~~~~~~~~~~~~~~~------~~~~~s~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 87 QVYVTNMA--------------------SSTLSVIDTTSNTVAGTVKTGKSP------LGLALSPDGKKLYVTNNGDKTV 140 (391)
T ss_dssp EEEEEETT--------------------TTEEEEEETTTTEEEEEEECSSSE------EEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEEECC--------------------CCEEEEEECCCCeEEEEEeCCCCc------ceEEECCCCCEEEEEeCCCCEE
Confidence 98876432 135899999999887655433322 133333 33565666667789
Q ss_pred EEEEEccCCeEEEeeeeC
Q 009465 210 HILQVRDLGNLVDVRTIG 227 (534)
Q Consensus 210 hi~qI~~~G~fv~vrtIG 227 (534)
+++.+. +|+.+..-..|
T Consensus 141 ~~~d~~-~~~~~~~~~~~ 157 (391)
T 1l0q_A 141 SVINTV-TKAVINTVSVG 157 (391)
T ss_dssp EEEETT-TTEEEEEEECC
T ss_pred EEEECC-CCcEEEEEecC
Confidence 998876 47776554444
No 9
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=89.59 E-value=4.9 Score=39.23 Aligned_cols=127 Identities=10% Similarity=0.011 Sum_probs=67.8
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEE-cCCC--Cee-------eeee
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVT-LASC--NEL-------ICKD 122 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~-l~~~--~e~-------L~re 122 (534)
.|||||++|..-+.+...+.||++..-+ +.. .. ....+. ++.+ +.. -..+
T Consensus 199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~-----g~~-------~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 199 AMHPTGNYLYALMEAGNRICEYVIDPAT-----HMP-------VY--------THHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTT-----CCE-------EE--------EEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEEeCCC-----CcE-------EE--------ccceEEcCCCCcCCccccccccccccc
Confidence 6999999988777777788898875100 100 00 000111 1111 111 2344
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEcc-CCeEeeeee-eccceEEeeecceeeee-----
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLE-DGVVLDEKV-FHNDFINLAHNMGVFLY----- 195 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~-~G~v~D~~~-f~~D~I~LsHN~Gv~L~----- 195 (534)
..+|..||+++.++.... .. . ..-++.++|+. +|.+.-... ... .-..-.++.+-
T Consensus 259 i~~~spdG~~l~v~~~~~-~~-------------~-~~~~i~v~~~~~~g~~~~~~~~~~~---~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 259 VCALTFSGKYMFASSRAN-KF-------------E-LQGYIAGFKLRDCGSIEKQLFLSPT---PTSGGHSNAVSPCPWS 320 (365)
T ss_dssp EEEECTTSSEEEEEEEES-ST-------------T-SCCEEEEEEECTTSCEEEEEEEEEC---SSCCTTCCCEEECTTC
T ss_pred EEEECCCCCEEEEECCCC-CC-------------C-CCCeEEEEEECCCCCEEEeeeeeec---CCCCcccceecCCCcC
Confidence 554889999998754431 00 0 11346677775 787543211 110 00011233332
Q ss_pred cceeeeeeecccEEEEEEEccC
Q 009465 196 DDLLAIVSLRYQTIHILQVRDL 217 (534)
Q Consensus 196 ~dlLAILS~q~QtIhi~qI~~~ 217 (534)
+..|++-+-...+|.||.+..+
T Consensus 321 g~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETT
T ss_pred CCEEEEEEcCCCeEEEEEEchh
Confidence 5678877766689999999753
No 10
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=89.56 E-value=5.9 Score=39.68 Aligned_cols=124 Identities=14% Similarity=0.100 Sum_probs=72.5
Q ss_pred eeCCC---CCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecC
Q 009465 53 KFTDD---GQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEG 129 (534)
Q Consensus 53 KFTpD---G~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~d 129 (534)
.|+|| |++|++=|.| ..|.||...... + + ......+.+...+ .-|. |
T Consensus 202 ~~sp~~~~~~~l~s~~~d-~~i~vwd~~~~~-------~------~------------~~~~~~h~~~v~~---~~~s-d 251 (450)
T 2vdu_B 202 HLIKDSDGHQFIITSDRD-EHIKISHYPQCF-------I------V------------DKWLFGHKHFVSS---ICCG-K 251 (450)
T ss_dssp EEEECTTSCEEEEEEETT-SCEEEEEESCTT-------C------E------------EEECCCCSSCEEE---EEEC-S
T ss_pred EEcCCCCCCcEEEEEcCC-CcEEEEECCCCc-------e------e------------eeeecCCCCceEE---EEEC-C
Confidence 79999 9898888877 568888876100 0 0 0000112222222 2334 8
Q ss_pred ceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeecc---ceEEeeec-----------------
Q 009465 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHN---DFINLAHN----------------- 189 (534)
Q Consensus 130 gryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~---D~I~LsHN----------------- 189 (534)
|++++.|+. +-++.|+|+.+|.......... ......|.
T Consensus 252 ~~~l~s~~~---------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 252 DYLLLSAGG---------------------DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp TTEEEEEES---------------------SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred CCEEEEEeC---------------------CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 999887642 2378999999998776655331 00000000
Q ss_pred ceeeee--cceeeeeeecccEEEEEEE--ccCCeEEEeeeeC
Q 009465 190 MGVFLY--DDLLAIVSLRYQTIHILQV--RDLGNLVDVRTIG 227 (534)
Q Consensus 190 ~Gv~L~--~dlLAILS~q~QtIhi~qI--~~~G~fv~vrtIG 227 (534)
.+|... +..|++-+-...+|+||.+ ...|++..+.+|.
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~ 352 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT 352 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec
Confidence 122222 5567777657899999999 5456776666653
No 11
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=89.56 E-value=6.5 Score=36.49 Aligned_cols=128 Identities=9% Similarity=0.071 Sum_probs=69.7
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEE-cCCC--CeeeeeeEEEEecC
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVT-LASC--NELICKDFFLSMEG 129 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~-l~~~--~e~L~refsLft~d 129 (534)
.|+|||++|++-+.....+.+|+....+ +. ++....+. +..+ +..-. ...-|..|
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~-----g~----------------~~~~~~~~~~~~~~~~~~~~-~~i~~s~d 241 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPH-----GN----------------IECVQTLDMMPENFSDTRWA-ADIHITPD 241 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTT-----SC----------------CEEEEEEECSCTTCCSCCCE-EEEEECTT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCC-----Cc----------------EEEEeeccccCccccccCCc-cceEECCC
Confidence 4899999998888777889999885211 00 00011111 1111 11111 13557889
Q ss_pred ceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEcc--CCeEeeeeeeccceEEeeecceeeee--cceeeeeeec
Q 009465 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLE--DGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLR 205 (534)
Q Consensus 130 gryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~--~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q 205 (534)
|++++++... +=++.++|+. +|...-...+.... .-.++.+- ++.|++-+-.
T Consensus 242 g~~l~v~~~~--------------------~~~i~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 242 GRHLYACDRT--------------------ASLITVFSVSEDGSVLSKEGFQPTET----QPRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp SSEEEEEETT--------------------TTEEEEEEECTTSCCEEEEEEEECSS----SCCCEEECTTSSEEEEECTT
T ss_pred CCEEEEEecC--------------------CCEEEEEEEcCCCCceEEeeeecCCC----ccceEEECCCCCEEEEecCC
Confidence 9998875322 1146777777 45332222222110 01233333 4556666656
Q ss_pred ccEEEEEEEcc-CCeEEEeeee
Q 009465 206 YQTIHILQVRD-LGNLVDVRTI 226 (534)
Q Consensus 206 ~QtIhi~qI~~-~G~fv~vrtI 226 (534)
..+|.||.+.. +|++..+..|
T Consensus 298 ~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 298 SHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp TCEEEEEEEETTTTEEEEEEEE
T ss_pred CCeEEEEEEcCCCceeeEcccc
Confidence 68999999864 5777666654
No 12
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=89.32 E-value=9.4 Score=35.74 Aligned_cols=77 Identities=8% Similarity=0.105 Sum_probs=50.9
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeee
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAI 201 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAI 201 (534)
.-+..||+++.+++.. +-+++++|+.+|.+....... +..++.+- ++.|.|
T Consensus 236 ~~~s~dg~~l~~~~~~--------------------~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~v 288 (353)
T 3vgz_A 236 ISLDTARQRAFITDSK--------------------AAEVLVVDTRNGNILAKVAAP-------ESLAVLFNPARNEAYV 288 (353)
T ss_dssp EEEETTTTEEEEEESS--------------------SSEEEEEETTTCCEEEEEECS-------SCCCEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEeCC--------------------CCEEEEEECCCCcEEEEEEcC-------CCceEEECCCCCEEEE
Confidence 4567899988775422 125889999999987665542 22345443 345666
Q ss_pred eeecccEEEEEEEccCCeEEEeeeeCC
Q 009465 202 VSLRYQTIHILQVRDLGNLVDVRTIGS 228 (534)
Q Consensus 202 LS~q~QtIhi~qI~~~G~fv~vrtIG~ 228 (534)
.+-...+|+++.+. +|+.+..-..|.
T Consensus 289 ~~~~~~~v~~~d~~-~~~~~~~~~~~~ 314 (353)
T 3vgz_A 289 THRQAGKVSVIDAK-SYKVVKTFDTPT 314 (353)
T ss_dssp EETTTTEEEEEETT-TTEEEEEEECCS
T ss_pred EECCCCeEEEEECC-CCeEEEEEecCC
Confidence 66667899999876 478776655554
No 13
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=88.55 E-value=10 Score=36.37 Aligned_cols=114 Identities=9% Similarity=0.120 Sum_probs=66.7
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
-.|+|||++|++-+.+...|.+|.... +. ....+.. +.. . ....|..||+
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~-------~~------------------~~~~~~~--~~~-~--~~~~~~~dg~ 170 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVT-------KA------------------VINTVSV--GRS-P--KGIAVTPDGT 170 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTT-------TE------------------EEEEEEC--CSS-E--EEEEECTTSS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCC-------Cc------------------EEEEEec--CCC-c--ceEEECCCCC
Confidence 358999998866666667777776541 10 1111111 111 1 3456788999
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeee--ccc
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSL--RYQ 207 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~--q~Q 207 (534)
++++++.. +-+++++|+.+|.+.......... .++.+. +..|++.+- ...
T Consensus 171 ~l~~~~~~--------------------~~~v~~~d~~~~~~~~~~~~~~~~------~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 171 KVYVANFD--------------------SMSISVIDTVTNSVIDTVKVEAAP------SGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEEEEETT--------------------TTEEEEEETTTTEEEEEEECSSEE------EEEEECTTSSEEEEEEECSSCC
T ss_pred EEEEEeCC--------------------CCEEEEEECCCCeEEEEEecCCCc------cceEECCCCCEEEEEecCcCCC
Confidence 98775332 125899999999876554432211 123332 446666665 557
Q ss_pred EEEEEEEccCCeEEE
Q 009465 208 TIHILQVRDLGNLVD 222 (534)
Q Consensus 208 tIhi~qI~~~G~fv~ 222 (534)
+|+++.+. +|+.+.
T Consensus 225 ~v~~~d~~-~~~~~~ 238 (391)
T 1l0q_A 225 TVSMIDTG-TNKITA 238 (391)
T ss_dssp EEEEEETT-TTEEEE
T ss_pred cEEEEECC-CCeEEE
Confidence 88888876 365443
No 14
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=88.48 E-value=3.4 Score=45.60 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=68.2
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCC---CeeeeeeEEEEec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASC---NELICKDFFLSME 128 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~---~e~L~refsLft~ 128 (534)
=.|||||++|.+=+.|.+ |.||...+-. .. +.. |-...++..... +... ..-|.+
T Consensus 135 vafSPDG~~LAsgs~DGt-VkIWd~~~~~--l~------------~~~----~i~l~ti~~~~~gh~~~V~---sVawSP 192 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGE-LQFFSIRKNS--EN------------TPE----FYFESSIRLSDAGSKDWVT---HIVWYE 192 (588)
T ss_dssp EEECSSSSCEEEEETTSE-EEEEECCCCT--TT------------CCC----CEEEEEEECSCTTCCCCEE---EEEEET
T ss_pred EEEcCCCCEEEEEcCCCE-EEEEECCCCc--cc------------ccc----ceeeeeeecccccccccEE---EEEEcC
Confidence 468999999988877764 8999987311 00 000 111222221121 1222 223447
Q ss_pred CceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEe---eee-eeccceEEeeecceeeeecceeeeeee
Q 009465 129 GNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVL---DEK-VFHNDFINLAHNMGVFLYDDLLAIVSL 204 (534)
Q Consensus 129 dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~---D~~-~f~~D~I~LsHN~Gv~L~~dlLAILS~ 204 (534)
|| |++++. |-+++++|+.++.+. .+. ..+.+.| .+|...|..||+.+
T Consensus 193 dg---Laass~--------------------D~tVrlWd~~~~~~~~~~~tL~~~h~~~V-----~svaFsg~~LASa~- 243 (588)
T 2j04_A 193 DV---LVAALS--------------------NNSVFSMTVSASSHQPVSRMIQNASRRKI-----TDLKIVDYKVVLTC- 243 (588)
T ss_dssp TE---EEEEET--------------------TCCEEEECCCSSSSCCCEEEEECCCSSCC-----CCEEEETTEEEEEC-
T ss_pred Cc---EEEEeC--------------------CCeEEEEECCCCccccceeeecccccCcE-----EEEEEECCEEEEEe-
Confidence 88 443333 446899999888732 111 1222222 23333478999888
Q ss_pred cccEEEEEEEccCCeEEEeeeeC
Q 009465 205 RYQTIHILQVRDLGNLVDVRTIG 227 (534)
Q Consensus 205 q~QtIhi~qI~~~G~fv~vrtIG 227 (534)
.++|+++.+.. |+...... |
T Consensus 244 -~~tIkLWd~~~-~~~~~~~~-g 263 (588)
T 2j04_A 244 -PGYVHKIDLKN-YSISSLKT-G 263 (588)
T ss_dssp -SSEEEEEETTT-TEEEEEEC-S
T ss_pred -CCeEEEEECCC-CeEEEEEc-C
Confidence 58999999884 67644443 6
No 15
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=86.37 E-value=7.7 Score=41.06 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.8
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|||||++|+.-+.|...+.+|...
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred EEECCCCCEEEEEEECCCccceEEee
Confidence 45999999999888887777777764
No 16
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=86.27 E-value=10 Score=36.97 Aligned_cols=138 Identities=7% Similarity=-0.027 Sum_probs=71.3
Q ss_pred CceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEe
Q 009465 48 DHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSM 127 (534)
Q Consensus 48 ~~~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft 127 (534)
+.++ -|+|||++|++-+.+ .+.+|+... + +.. ........++. .+ ...+.
T Consensus 42 ~~~~-a~spdg~~l~~~~~~--~v~~~~~~~-----~-g~~------------------~~~~~~~~~g~-~~--~~~~s 91 (365)
T 1jof_A 42 ISWM-TFDHERKNIYGAAMK--KWSSFAVKS-----P-TEI------------------VHEASHPIGGH-PR--ANDAD 91 (365)
T ss_dssp CSEE-EECTTSSEEEEEEBT--EEEEEEEEE-----T-TEE------------------EEEEEEECCSS-GG--GGCTT
T ss_pred CcEE-EECCCCCEEEEEccc--eEEEEEECC-----C-CCE------------------EEeeEeecCCC-Cc--cEEEC
Confidence 4444 599999999988887 788887630 0 100 00001111121 11 24567
Q ss_pred cCceEEEEEeecccCCCCCCCCCCCCCC--CCc-ceEEEEEEEcc-CCeEeeeeee-ccceEEeeecceeeee--cceee
Q 009465 128 EGNQFGLFATSTAQIHDAPTTGRAIQGV--PFI-EKITFHLLRLE-DGVVLDEKVF-HNDFINLAHNMGVFLY--DDLLA 200 (534)
Q Consensus 128 ~dgryvivasa~~~~~~~~~~n~av~~~--p~l-e~ytfhlVdL~-~G~v~D~~~f-~~D~I~LsHN~Gv~L~--~dlLA 200 (534)
.||++++++++. .+ ....+ +.+ .+=++.++++. +|.+...... ..+ .-.|-.++.+- +..|+
T Consensus 92 pdg~~l~~~~~~--~~-------~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 92 TNTRAIFLLAAK--QP-------PYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ--ENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp SCCEEEEEEECS--ST-------TCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC--TTCCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEec--CC-------cceeccceeecCCceEEEEccCCCCcCcceEeeEEeC--CCCcceEEEECCCCCEEE
Confidence 899976554332 00 00000 000 22356788886 6876543321 000 01223344444 34666
Q ss_pred eeeecccEEEEEEEccCCeEEEeeee
Q 009465 201 IVSLRYQTIHILQVRDLGNLVDVRTI 226 (534)
Q Consensus 201 ILS~q~QtIhi~qI~~~G~fv~vrtI 226 (534)
+-+....+|++|.+.++|++..+.++
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~ 186 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSV 186 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeE
Confidence 66666689999999745888666544
No 17
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=86.26 E-value=6.4 Score=41.74 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=51.6
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEec-
Q 009465 50 SFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSME- 128 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~- 128 (534)
..=.|||||++|.+-|.| ..|.+|+.. ... .+...++. .+... + ..-|..
T Consensus 182 ~~v~~spdg~~l~v~~~d-~~V~v~D~~--------~~t---------------~~~~~~i~--~g~~p--~-~va~sp~ 232 (543)
T 1nir_A 182 HISRMSASGRYLLVIGRD-ARIDMIDLW--------AKE---------------PTKVAEIK--IGIEA--R-SVESSKF 232 (543)
T ss_dssp EEEEECTTSCEEEEEETT-SEEEEEETT--------SSS---------------CEEEEEEE--CCSEE--E-EEEECCS
T ss_pred ceEEECCCCCEEEEECCC-CeEEEEECc--------CCC---------------CcEEEEEe--cCCCc--c-eEEeCCC
Confidence 345799999999999999 888888772 000 01122233 23221 2 334677
Q ss_pred ---CceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeee
Q 009465 129 ---GNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF 179 (534)
Q Consensus 129 ---dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f 179 (534)
||+++.+++.. +=++.++|..+|++..+...
T Consensus 233 ~~~dg~~l~v~~~~--------------------~~~v~v~D~~t~~~~~~i~~ 266 (543)
T 1nir_A 233 KGYEDRYTIAGAYW--------------------PPQFAIMDGETLEPKQIVST 266 (543)
T ss_dssp TTCTTTEEEEEEEE--------------------SSEEEEEETTTCCEEEEEEC
T ss_pred cCCCCCEEEEEEcc--------------------CCeEEEEeccccccceeecc
Confidence 99999987543 11467889999988776554
No 18
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=85.70 E-value=13 Score=37.30 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=24.4
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeE
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV 173 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v 173 (534)
.-|..||+++++++... .+.+++++|+++|.+
T Consensus 316 ~~~spdG~~l~~~~~~~------------------g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNG------------------GQQHIAKQDLATGGV 347 (415)
T ss_dssp EEECTTSSEEEEEEECS------------------SCEEEEEEETTTCCE
T ss_pred eEECCCCCEEEEEECcC------------------CceEEEEEECCCCCE
Confidence 45788999998865430 157899999999976
No 19
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=85.32 E-value=24 Score=33.17 Aligned_cols=50 Identities=18% Similarity=0.043 Sum_probs=25.0
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCC------CCCCcceEEEEEEEccCCeE
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQ------GVPFIEKITFHLLRLEDGVV 173 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~------~~p~le~ytfhlVdL~~G~v 173 (534)
.-+..||+++++++......+.+..-+.++ +...-..-.++++|+.+|..
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 346789999998764310000000000000 00012357899999999986
No 20
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=84.87 E-value=15 Score=34.28 Aligned_cols=117 Identities=19% Similarity=0.314 Sum_probs=64.3
Q ss_pred CCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEE
Q 009465 47 PDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLS 126 (534)
Q Consensus 47 P~~~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLf 126 (534)
++...-.|+|||++|++-+.|. .|.||.... +.+ . +.|. .+.++..+-.....
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~-------~~~------~--~~~~-----------~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 193 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSK-------GKC------L--KTYT-----------GHKNEKYCIFANFS 245 (312)
T ss_dssp CCEEEEEECTTSSEEEEEETTT-EEEEEETTT-------TEE------E--EEEC-----------SSCCSSSCCCEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCC-eEEEEECCC-------CcE------E--EEEE-----------ecCCceEEEEEEEE
Confidence 4455568999999999988775 788988761 100 0 0000 01111112223344
Q ss_pred ecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeee-c
Q 009465 127 MEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSL-R 205 (534)
Q Consensus 127 t~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~-q 205 (534)
..+|++++.|+. +=++.++|+++|.+..+..-+.|.|.-- -.+--+.+||.-|. .
T Consensus 246 ~~~~~~l~sg~~---------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~---~~~p~~~~l~s~~~~~ 301 (312)
T 4ery_A 246 VTGGKWIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVIST---ACHPTENIIASAALEN 301 (312)
T ss_dssp CSSSCEEEECCT---------------------TSCEEEEETTTCCEEEEECCCSSCEEEE---EECSSSSEEEEEECTT
T ss_pred eCCCcEEEEECC---------------------CCEEEEEECCCchhhhhhhccCCcEEEE---eecCcCCceEEEEccC
Confidence 467777665432 2248899999998876655444443211 01113456666555 3
Q ss_pred ccEEEEEEE
Q 009465 206 YQTIHILQV 214 (534)
Q Consensus 206 ~QtIhi~qI 214 (534)
-.+|.|++.
T Consensus 302 d~~i~~W~~ 310 (312)
T 4ery_A 302 DKTIKLWKS 310 (312)
T ss_dssp TCCEEEEEC
T ss_pred CccEEEecC
Confidence 566777663
No 21
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=84.78 E-value=25 Score=32.74 Aligned_cols=125 Identities=5% Similarity=-0.068 Sum_probs=72.9
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCC-----eeeeeeEEEEe
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCN-----ELICKDFFLSM 127 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~-----e~L~refsLft 127 (534)
.|+|||++|++-+.....|.+|.-.... ....+.+..+. ...+-....+.
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGE-------------------------VKGRLVLDDRKRTEEVRPLQPRELVAD 149 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCC-------------------------EEEEEESCCCCCCSSCCCCEEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCe-------------------------eEEEEecCCCccccccCCCCCceEEEC
Confidence 5889999888777777777777654110 11122221111 11222346678
Q ss_pred cCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeeec
Q 009465 128 EGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLR 205 (534)
Q Consensus 128 ~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q 205 (534)
.||+++.+++.. .+-+++++|+++|.+......... +-.|+.+. +..|++.+-
T Consensus 150 ~dg~~l~~~~~~-------------------~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~- 204 (353)
T 3vgz_A 150 DATNTVYISGIG-------------------KESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTTNA- 204 (353)
T ss_dssp TTTTEEEEEEES-------------------SSCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEECT-
T ss_pred CCCCEEEEEecC-------------------CCceEEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEEcC-
Confidence 899998886533 123588999999998766542221 11234443 345555554
Q ss_pred ccEEEEEEEccCCeEEEeeeeCC
Q 009465 206 YQTIHILQVRDLGNLVDVRTIGS 228 (534)
Q Consensus 206 ~QtIhi~qI~~~G~fv~vrtIG~ 228 (534)
...|+++.+. +|+.+..-.+|.
T Consensus 205 ~~~i~~~d~~-~~~~~~~~~~~~ 226 (353)
T 3vgz_A 205 DGELITIDTA-DNKILSRKKLLD 226 (353)
T ss_dssp TSEEEEEETT-TTEEEEEEECCC
T ss_pred CCeEEEEECC-CCeEEEEEEcCC
Confidence 5678888766 588777666643
No 22
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=82.74 E-value=14 Score=39.38 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=42.2
Q ss_pred eeEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccc-------eEEeeecceee
Q 009465 121 KDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND-------FINLAHNMGVF 193 (534)
Q Consensus 121 refsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D-------~I~LsHN~Gv~ 193 (534)
..++. .||+++++++... .-.+.+++++|+.+|...-...-..+ .+.++.+
T Consensus 290 ~~~~~--pDg~~l~~~~~~~----------------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd---- 347 (741)
T 2ecf_A 290 ARVNW--RDPQHLSFQRQSR----------------DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD---- 347 (741)
T ss_dssp EEEEE--EETTEEEEEEEET----------------TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT----
T ss_pred EEEEe--CCCCEEEEEEecc----------------cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC----
Confidence 44444 8999999876531 12468899999999975433222211 2222222
Q ss_pred eecceeeeeeecccEEEEEEEccCCe
Q 009465 194 LYDDLLAIVSLRYQTIHILQVRDLGN 219 (534)
Q Consensus 194 L~~dlLAILS~q~QtIhi~qI~~~G~ 219 (534)
+. +.+.+-...+++|+.+..+|.
T Consensus 348 --g~-~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 348 --GS-ILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp --SC-EEEEECTTSSCEEEEECSSSC
T ss_pred --Ce-EEEEecCCCccEEEEEcCCCC
Confidence 22 333444555677877764555
No 23
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=81.90 E-value=40 Score=32.92 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=19.5
Q ss_pred eeeCCCCCeEEEee-CCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFS-RNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS-~dq~~L~vYry~ 77 (534)
-+|||||++|+.-| .+...|.|+...
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECC
Confidence 37999999996544 455778888765
No 24
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=81.73 E-value=12 Score=35.53 Aligned_cols=27 Identities=4% Similarity=0.156 Sum_probs=21.9
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecC
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g 78 (534)
=.|+|||+++++.+.....|.+|..+.
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 369999999777777777899999873
No 25
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=81.45 E-value=27 Score=31.02 Aligned_cols=70 Identities=11% Similarity=-0.029 Sum_probs=39.6
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccc--eEEeeecceeeeecceeeee
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND--FINLAHNMGVFLYDDLLAIV 202 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D--~I~LsHN~Gv~L~~dlLAIL 202 (534)
-+..||+++++++.. . ..+.++.+|+.+|.+..-...... .+.++. -+..|++.
T Consensus 135 ~~spdg~~l~~~~~~--~----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~l~~~ 190 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIR--D----------------QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP------DGRWIYFN 190 (297)
T ss_dssp EECTTSSEEEEEEEE--T----------------TEEEEEEEETTTCCEEECCCSSSCEEEEEECT------TSSEEEEE
T ss_pred EECCCCCEEEEEECC--C----------------CceEEEEEECCCCcceEcccCCCccccceECC------CCCEEEEE
Confidence 467899998875443 1 235788888888875322111111 122222 23456666
Q ss_pred eecccEEEEEEEccCC
Q 009465 203 SLRYQTIHILQVRDLG 218 (534)
Q Consensus 203 S~q~QtIhi~qI~~~G 218 (534)
+-....+.|+.+..+|
T Consensus 191 ~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDG 206 (297)
T ss_dssp ECTTSSCEEEEEETTS
T ss_pred ecCCCCccEEEECCCC
Confidence 6556678888886333
No 26
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=81.14 E-value=30 Score=36.58 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=23.5
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCC
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDG 171 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G 171 (534)
.-|..||+++++++... .-...+++++|+.+|
T Consensus 263 ~~~spdg~~l~~~~~~~----------------~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNR----------------AQNECKVNAYDAETG 294 (706)
T ss_dssp EEECTTSSEEEEEEECT----------------TSCEEEEEEEETTTC
T ss_pred EEEECCCCEEEEEEeCC----------------CCCeeEEEEEECCCC
Confidence 45778999988865431 114578999999999
No 27
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=80.70 E-value=11 Score=33.71 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=48.3
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
-.|+|||++|+.-+.....+.||.+.-.+ + .. ..+......+ ...-|..||+
T Consensus 178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-----~-------~~--------------~~~~~~~~~~--~~~~~s~dg~ 229 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDG-----S-------SV--------------ERITDSAYGD--WFPHPSPSGD 229 (297)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTS-----S-------CE--------------EECCCCSEEE--EEEEECTTSS
T ss_pred ceECCCCCEEEEEecCCCCccEEEECCCC-----C-------Cc--------------EEEecCCccc--CCeEECCCCC
Confidence 36899999888777555677788775100 0 00 0011111111 1245678999
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeE
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV 173 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v 173 (534)
++++++...... ..+.-.+.+++++|+++|.+
T Consensus 230 ~l~~~~~~~~~~----------~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 230 KVVFVSYDADVF----------DHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEEEETTCC----------SCCSSEEEEEEEEETTSCSC
T ss_pred EEEEEEcCCCCC----------cccccCceEEEEEecCCCCc
Confidence 999876652110 12223457899999999864
No 28
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=80.23 E-value=28 Score=34.06 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=26.4
Q ss_pred eeecCCCceeeeeCCCCCeEEEeeCCCc------eEEEEeecC
Q 009465 42 YDIECPDHSFRKFTDDGQYLISFSRNHQ------DLIVYRPMW 78 (534)
Q Consensus 42 ~~Ve~P~~~lrKFTpDG~~LIaFS~dq~------~L~vYry~g 78 (534)
++|.-| .|=-.|+|||+.|++=+-|.. .|.+|+...
T Consensus 11 ~~~g~P-V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~ 52 (365)
T 4h5i_A 11 YNVGYP-AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDP 52 (365)
T ss_dssp EECSSC-EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECT
T ss_pred cCCCCC-EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcC
Confidence 455555 454579999999999776654 589998764
No 29
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=79.73 E-value=46 Score=32.23 Aligned_cols=121 Identities=9% Similarity=-0.005 Sum_probs=69.0
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceE
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgry 132 (534)
.|+|||++|++-+.....|.+|.... +. ....+. .++. . ...-|..||++
T Consensus 309 ~~~~~g~~l~~~~~~~~~v~v~d~~~-------~~------------------~~~~~~--~~~~-~--~~~~~s~dg~~ 358 (433)
T 3bws_A 309 VSGNTENKIYVSDMCCSKIEVYDLKE-------KK------------------VQKSIP--VFDK-P--NTIALSPDGKY 358 (433)
T ss_dssp EECSSTTEEEEEETTTTEEEEEETTT-------TE------------------EEEEEE--CSSS-E--EEEEECTTSSE
T ss_pred EECCCCCEEEEEecCCCEEEEEECCC-------Cc------------------EEEEec--CCCC-C--CeEEEcCCCCE
Confidence 68999998888777777888887751 10 011111 1111 1 14567789999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeeecccEEE
Q 009465 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTIH 210 (534)
Q Consensus 133 vivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtIh 210 (534)
+.+++...-. . ....+ +-.-++=+++++|+.+|.+.....-... + .++.+- +..|++-+-...+|+
T Consensus 359 l~~~~~~~~~---~-~~~~~--~~g~~dg~v~~~d~~~~~~~~~~~~~~~-~-----~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 359 LYVSCRGPNH---P-TEGYL--KKGLVLGKVYVIDTTTDTVKEFWEAGNQ-P-----TGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp EEEEECCCCC---T-TTCTT--SCCSSCCEEEEEETTTTEEEEEEECSSS-E-----EEEEECTTSCEEEEEETTTTEEE
T ss_pred EEEEecCCCc---c-ccccc--cccccceEEEEEECCCCcEEEEecCCCC-C-----ceEEEcCCCCEEEEEECCCCeEE
Confidence 9887654110 0 01110 0012455799999999998765443221 1 123332 345666555568888
Q ss_pred EEEEc
Q 009465 211 ILQVR 215 (534)
Q Consensus 211 i~qI~ 215 (534)
||.+.
T Consensus 427 v~~~~ 431 (433)
T 3bws_A 427 VYRRD 431 (433)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 88875
No 30
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=79.43 E-value=35 Score=33.17 Aligned_cols=121 Identities=11% Similarity=0.075 Sum_probs=67.7
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCc
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGN 130 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dg 130 (534)
-=.|+|||++|++-+.| ..|.||.... +. ....+...+.+..+ -...|..||
T Consensus 181 ~~~~~~~~~~l~~~~~d-~~i~iwd~~~-------~~------------------~~~~~~~~~~~~~~--~~~~~~~~~ 232 (402)
T 2aq5_A 181 SVDWSRDGALICTSCRD-KRVRVIEPRK-------GT------------------VVAEKDRPHEGTRP--VHAVFVSEG 232 (402)
T ss_dssp EEEECTTSSCEEEEETT-SEEEEEETTT-------TE------------------EEEEEECSSCSSSC--CEEEECSTT
T ss_pred EEEECCCCCEEEEEecC-CcEEEEeCCC-------Cc------------------eeeeeccCCCCCcc--eEEEEcCCC
Confidence 34689999999888877 4688887751 00 01111111111111 135577889
Q ss_pred eEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeE-eeeeeeccceEEeeecceee---ee--cceeeeeee
Q 009465 131 QFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV-LDEKVFHNDFINLAHNMGVF---LY--DDLLAIVSL 204 (534)
Q Consensus 131 ryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v-~D~~~f~~D~I~LsHN~Gv~---L~--~dlLAILS~ 204 (534)
+++++|... -.+-++.++|+.+|.. .-... +.|..++. .. +..|++.+-
T Consensus 233 ~~l~~g~~~------------------~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 233 KILTTGFSR------------------MSERQVALWDTKHLEEPLSLQE-------LDTSSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp EEEEEEECT------------------TCCEEEEEEETTBCSSCSEEEE-------CCCCSSCEEEEEETTTTEEEEEET
T ss_pred cEEEEeccC------------------CCCceEEEEcCccccCCceEEe-------ccCCCceeEEEEcCCCCEEEEEEc
Confidence 987775321 1245788999988753 22222 22333332 22 456666666
Q ss_pred cccEEEEEEEccCCe--EEEeee
Q 009465 205 RYQTIHILQVRDLGN--LVDVRT 225 (534)
Q Consensus 205 q~QtIhi~qI~~~G~--fv~vrt 225 (534)
.-.+|+||.+.. |+ +..+..
T Consensus 288 ~dg~i~i~d~~~-~~~~~~~l~~ 309 (402)
T 2aq5_A 288 GDSSIRYFEITS-EAPFLHYLSM 309 (402)
T ss_dssp TCSCEEEEEECS-STTCEEEEEE
T ss_pred CCCeEEEEEecC-CCcceEeecc
Confidence 678999999985 44 444443
No 31
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.53 E-value=20 Score=34.20 Aligned_cols=118 Identities=11% Similarity=0.020 Sum_probs=63.0
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCc
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGN 130 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dg 130 (534)
--.|+|||++|++=+.| ..|.||..+... . .. ..|+ ..+.+... +.-|.+||
T Consensus 175 ~~~~~pdg~~lasg~~d-g~i~iwd~~~~~-------~------~~-~~~~----------~~h~~~v~---~l~fs~~g 226 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPD-GILDVYNLSSPD-------Q------AS-SRFP----------VDEEAKIK---EVKFADNG 226 (343)
T ss_dssp EEEECTTSCEEEEECTT-SCEEEEESSCTT-------S------CC-EECC----------CCTTSCEE---EEEECTTS
T ss_pred EEEECCCCCEEEEEcCC-CEEEEEECCCCC-------C------Cc-cEEe----------ccCCCCEE---EEEEeCCC
Confidence 34799999988877766 478888876211 0 00 0010 01111111 34467889
Q ss_pred eEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeee-eccceEEeeecceeeee--cceeeeeeeccc
Q 009465 131 QFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKV-FHNDFINLAHNMGVFLY--DDLLAIVSLRYQ 207 (534)
Q Consensus 131 ryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~-f~~D~I~LsHN~Gv~L~--~dlLAILS~q~Q 207 (534)
++++.++ . + ++.++|+.++....+.. +......+.. ..+... +..||+-|-.-.
T Consensus 227 ~~l~s~~-~--------------------~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~s~~d~ 283 (343)
T 3lrv_A 227 YWMVVEC-D--------------------Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDIDDSGKNMIAYSNESN 283 (343)
T ss_dssp SEEEEEE-S--------------------S-BEEEEETTSSTTCBSSCCCBC-----CC-EEEEECTTSSEEEEEETTTT
T ss_pred CEEEEEe-C--------------------C-eEEEEEcCCCCcceeecccccccccccc-eEEEECCCCCEEEEecCCCC
Confidence 8877754 3 2 58889998886433211 1111111110 112222 456776666467
Q ss_pred EEEEEEEccCCe
Q 009465 208 TIHILQVRDLGN 219 (534)
Q Consensus 208 tIhi~qI~~~G~ 219 (534)
+|+||.+...++
T Consensus 284 ~i~v~~~~~~~~ 295 (343)
T 3lrv_A 284 SLTIYKFDKKTK 295 (343)
T ss_dssp EEEEEEECTTTC
T ss_pred cEEEEEEccccc
Confidence 899999965443
No 32
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=77.98 E-value=24 Score=34.25 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=34.2
Q ss_pred EEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEcc
Q 009465 162 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRD 216 (534)
Q Consensus 162 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~ 216 (534)
++.|+|+.+|...-+..+..... +|.+..+.+++.+ -.+|+|+.+..
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~~v~------~v~~~~~~~~~~~--~~~i~i~d~~~ 128 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIKVDAPVK------DLFLSREFIVVSY--GDVISVFKFGN 128 (355)
T ss_dssp EEEEEETTTTEEEEEEECSSCEE------EEEECSSEEEEEE--TTEEEEEESST
T ss_pred EEEEEECCCCcEEEEEECCCceE------EEEEcCCEEEEEE--cCEEEEEECCC
Confidence 89999999999888777665432 3445566666543 57899999875
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=77.92 E-value=34 Score=32.86 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=23.2
Q ss_pred CceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 48 DHSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 48 ~~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.+..-.|+|||++|++-|.|. .+.||...
T Consensus 18 ~v~~l~~sp~g~~las~~~D~-~i~iw~~~ 46 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDR-RIRIWGTE 46 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTS-CEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCC-eEEEEEcC
Confidence 355668999999998888774 68899876
No 34
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=76.99 E-value=17 Score=38.12 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=24.3
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEcc-CCe
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLE-DGV 172 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~-~G~ 172 (534)
-|..||+++.+++... + .-+....+++++|+. +|.
T Consensus 194 ~~SpDG~~la~~~~~~--~-----------~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 194 RLSPDGRQAVWLAWDH--P-----------RMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp EECTTSSEEEEEEECT--T-----------CCTTTCEEEEEEEECTTSC
T ss_pred eECCCCCEEEEEECCC--C-----------CCCCCCcEEEEEEECCCCc
Confidence 4779999998876441 1 112346789999999 683
No 35
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=76.80 E-value=27 Score=36.51 Aligned_cols=81 Identities=9% Similarity=-0.036 Sum_probs=45.1
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccC------CeEeeeee-eccceEEeeecceeeeec
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLED------GVVLDEKV-FHNDFINLAHNMGVFLYD 196 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~------G~v~D~~~-f~~D~I~LsHN~Gv~L~~ 196 (534)
.-|..||+++++++... .. ..+.-...+++++|+.+ |.+. ..+ -..+.+. .-.++=-+
T Consensus 135 ~~~spDg~~l~~~~~~~-~~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~---~~~~SpDG 199 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEF-TG----------EGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVT---GPRLSPDG 199 (662)
T ss_dssp EEEETTTTEEEEEEEEE-CS----------SSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEEC---CCEECTTS
T ss_pred cEECCCCCEEEEEEecc-cC----------CCCCCceeEEEEEECCCCccccCCcee-EEEecCCCccc---CceECCCC
Confidence 45778999998866431 11 01123457899999998 6531 111 1112110 00111224
Q ss_pred ceeeeeeecc-------cEEEEEEEccCCe
Q 009465 197 DLLAIVSLRY-------QTIHILQVRDLGN 219 (534)
Q Consensus 197 dlLAILS~q~-------QtIhi~qI~~~G~ 219 (534)
..||..|-.+ .+|+++.+..+|+
T Consensus 200 ~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 200 RQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5677777654 5899998874573
No 36
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=76.54 E-value=46 Score=30.50 Aligned_cols=128 Identities=11% Similarity=-0.013 Sum_probs=68.8
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCe-eeeeeEEEEecCce
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNE-LICKDFFLSMEGNQ 131 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e-~L~refsLft~dgr 131 (534)
.|+|||++|++-+.+...|.+|...... ....+.+...++ .-.=...-+..||+
T Consensus 40 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~s~dg~ 94 (337)
T 1pby_B 40 MVAPGGRIAYATVNKSESLVKIDLVTGE-------------------------TLGRIDLSTPEERVKSLFGAALSPDGK 94 (337)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTCC-------------------------EEEEEECCBTTEEEECTTCEEECTTSS
T ss_pred EEcCCCCEEEEEeCCCCeEEEEECCCCC-------------------------eEeeEEcCCcccccccccceEECCCCC
Confidence 4999999987777777788887654100 011111111000 00001345678999
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCC-c--ceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeeecc
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPF-I--EKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRY 206 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~-l--e~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~ 206 (534)
++.+++..... .+. . .+-+++++|+++|.+......... -.++.+- +..|++. .
T Consensus 95 ~l~~~~~~~~~------------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~---~ 153 (337)
T 1pby_B 95 TLAIYESPVRL------------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQ------ITMLAWARDGSKLYGL---G 153 (337)
T ss_dssp EEEEEEEEEEE------------CSSCEEECCCEEEEEETTTTEEEEEEECCSS------CCCEEECTTSSCEEEE---S
T ss_pred EEEEEeccccc------------ccccccccCceEEEEECCCCcEEEEEeCCCC------cceeEECCCCCEEEEe---C
Confidence 98887533100 011 1 245789999999987755433211 1123332 3344444 3
Q ss_pred cEEEEEEEccCCeEEEeeeeC
Q 009465 207 QTIHILQVRDLGNLVDVRTIG 227 (534)
Q Consensus 207 QtIhi~qI~~~G~fv~vrtIG 227 (534)
..|+++.+. +|+.+..-..|
T Consensus 154 ~~i~~~d~~-~~~~~~~~~~~ 173 (337)
T 1pby_B 154 RDLHVMDPE-AGTLVEDKPIQ 173 (337)
T ss_dssp SSEEEEETT-TTEEEEEECST
T ss_pred CeEEEEECC-CCcEeeeeecc
Confidence 678888876 47766444434
No 37
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=76.35 E-value=36 Score=36.00 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=19.8
Q ss_pred eeCC----CCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTD----DGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTp----DG~~LIaFS~dq~~L~vYry~ 77 (534)
-||| ||++|.+-+..-..+.|+...
T Consensus 228 a~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred EeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 3899 999998888766778888643
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=75.95 E-value=51 Score=31.19 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=19.1
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEe
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYR 75 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYr 75 (534)
--.|+|||++|++-+.|. .|.||.
T Consensus 113 ~~~~s~~~~~l~~~~~dg-~i~i~~ 136 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENG-ELRLWN 136 (425)
T ss_dssp EEEECTTSSEEEEEETTS-CEEEEE
T ss_pred EEEEcCCCCEEEEEeCCC-eEEEEe
Confidence 346999999998887774 688887
No 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=75.84 E-value=19 Score=38.32 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=34.7
Q ss_pred ceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeee----cccEEEEEEE
Q 009465 159 EKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSL----RYQTIHILQV 214 (534)
Q Consensus 159 e~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~----q~QtIhi~qI 214 (534)
.+=++.++|+++|.+..+...+...+.++.+ +..||+.+. -...+++++.
T Consensus 449 ~d~~v~~~d~~~~~~~~~~~~~~~~v~~s~d------g~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 449 SDGFVYFFDWDNGTLVRRIDVNAKDVIWSDN------GELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ETTEEEEECTTTCCEEEEESSCEEEEEECTT------SSEEEEEECCCSSCSCSEEEEEE
T ss_pred cCCEEEEEECCcCcEEEEEecCCCEEEEcCC------CCEEEEEEcCcccCCceEEEEEe
Confidence 3458999999999988777766666666654 477787743 2345666654
No 40
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=75.14 E-value=62 Score=31.30 Aligned_cols=121 Identities=6% Similarity=-0.031 Sum_probs=70.7
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceE
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgry 132 (534)
.|+|||++|++-+.....|.+|.... +.. ... +..++. =...-+..||++
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~-------~~~------------------~~~--~~~~~~---~~~~~~~~~g~~ 267 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKT-------KLE------------------IRK--TDKIGL---PRGLLLSKDGKE 267 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTT-------TEE------------------EEE--CCCCSE---EEEEEECTTSSE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCC-------CcE------------------EEE--ecCCCC---ceEEEEcCCCCE
Confidence 57888888876665556777776541 100 000 111111 134567789999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeeecccEEE
Q 009465 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTIH 210 (534)
Q Consensus 133 vivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtIh 210 (534)
+++++.... .+ .-++-+++++|+.+|.+......... -.++.+. ++.|.+.+-..-+|+
T Consensus 268 l~~~~~~~~---------~~----~~~dg~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 268 LYIAQFSAS---------NQ----ESGGGRLGIYSMDKEKLIDTIGPPGN------KRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp EEEEEEESC---------TT----CSCCEEEEEEETTTTEEEEEEEEEEC------EEEEEECSSTTEEEEEETTTTEEE
T ss_pred EEEEECCCC---------cc----ccCCCeEEEEECCCCcEEeeccCCCC------cceEEECCCCCEEEEEecCCCEEE
Confidence 988765410 00 02467899999999987665432221 1133333 335666666678899
Q ss_pred EEEEccCCeEEEe
Q 009465 211 ILQVRDLGNLVDV 223 (534)
Q Consensus 211 i~qI~~~G~fv~v 223 (534)
++.+. +|+.+..
T Consensus 329 v~d~~-~~~~~~~ 340 (433)
T 3bws_A 329 VYDLK-EKKVQKS 340 (433)
T ss_dssp EEETT-TTEEEEE
T ss_pred EEECC-CCcEEEE
Confidence 99987 4776543
No 41
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=75.04 E-value=18 Score=35.11 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.0
Q ss_pred CceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 48 DHSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 48 ~~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
+..-=.|+|||++|++-+. ..|.||...
T Consensus 287 ~v~~~~~s~~g~~l~~~~~--~~v~iwd~~ 314 (447)
T 3dw8_B 287 SISDVKFSHSGRYMMTRDY--LSVKVWDLN 314 (447)
T ss_dssp CEEEEEECTTSSEEEEEES--SEEEEEETT
T ss_pred eEEEEEECCCCCEEEEeeC--CeEEEEeCC
Confidence 3444589999999998776 899999987
No 42
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=75.04 E-value=28 Score=39.48 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=13.2
Q ss_pred eeeeeCCCCCeEEEeeCC
Q 009465 50 SFRKFTDDGQYLISFSRN 67 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~d 67 (534)
.--.|||||++|+.-|.+
T Consensus 56 ~~~~~SPDG~~la~~s~~ 73 (1045)
T 1k32_A 56 NNARFFPDGRKIAIRVMR 73 (1045)
T ss_dssp EEEEECTTSSEEEEEEEE
T ss_pred cCeEECCCCCEEEEEEee
Confidence 345799999987766654
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=74.84 E-value=25 Score=33.81 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=19.7
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
=.|+|||++|++-|.|. .+.||...
T Consensus 67 ~~~sp~g~~l~s~s~D~-~v~iw~~~ 91 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDA-TTCIWKKN 91 (345)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEEEC
T ss_pred EEECCCCCEEEEEECCC-cEEEEEcc
Confidence 46999999999888775 46777765
No 44
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=74.28 E-value=39 Score=32.21 Aligned_cols=37 Identities=3% Similarity=-0.131 Sum_probs=26.1
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccc
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND 182 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D 182 (534)
.|..||+++++++.. -+++++|+++|....-..++..
T Consensus 87 ~~spdg~~l~~~~~~---------------------~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 87 FLSPDDDALFYVKDG---------------------RNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp EECTTSSEEEEEETT---------------------TEEEEEETTTCCEEEEEECCTT
T ss_pred EEcCCCCEEEEEeCC---------------------CeEEEEECCCCcceeeeechhh
Confidence 478999998886521 2689999999976554444444
No 45
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=74.10 E-value=55 Score=30.23 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=34.6
Q ss_pred eEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccC
Q 009465 160 KITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDL 217 (534)
Q Consensus 160 ~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~ 217 (534)
+=++.++|+.+|........+...+.+... .+.+ ++.-...+|++|.+...
T Consensus 150 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~i~~~~~~~~ 200 (368)
T 3mmy_A 150 DKTLKFWDTRSSNPMMVLQLPERCYCADVI------YPMA-VVATAERGLIVYQLENQ 200 (368)
T ss_dssp TSEEEEECSSCSSCSEEEECSSCEEEEEEE------TTEE-EEEEGGGCEEEEECSSS
T ss_pred CCcEEEEECCCCcEEEEEecCCCceEEEec------CCee-EEEeCCCcEEEEEeccc
Confidence 446899999999887777776655554433 3333 34555678999988753
No 46
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=74.06 E-value=12 Score=40.48 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.1
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|||||++|+..|.|...+.+|.+.
T Consensus 177 ~wSpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 177 WWSPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEEE
T ss_pred EECCCCCEEEEEEEcccCCceEEEE
Confidence 5999999999888888877777765
No 47
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=73.66 E-value=35 Score=36.72 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=56.8
Q ss_pred eeC----CCCCeEEEeeCCCceEEEEeecCCCCCcCc-----cc-ccC---CCCCcccchhhhhhheeeEEEcCCCCeee
Q 009465 53 KFT----DDGQYLISFSRNHQDLIVYRPMWLSFSCKE-----ED-CCR---HDLPPKAKRFESFFTQLYSVTLASCNELI 119 (534)
Q Consensus 53 KFT----pDG~~LIaFS~dq~~L~vYry~g~~~~~~~-----~~-~~~---~~~~~r~~~F~~fF~~~~~~~l~~~~e~L 119 (534)
-|| |||++|+..+-....+.|+.-. +..... +. .+. +..+.-+.+..+-....+.+++...|+..
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~--t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGE--TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETT--TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECC--CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 488 7999999999888888888732 211000 00 000 01111112222222334455554444322
Q ss_pred eee-------------------EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeee
Q 009465 120 CKD-------------------FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK 177 (534)
Q Consensus 120 ~re-------------------fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~ 177 (534)
-=| ...|+.||||+++|+.. +=++.+||+++|.+....
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~--------------------sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA--------------------RNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG--------------------GTEEEEEETTTTEEEEEE
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC--------------------CCeEEEEECCCCcEEEEE
Confidence 111 23588999999997533 113778999999987654
No 48
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=73.35 E-value=24 Score=33.18 Aligned_cols=108 Identities=7% Similarity=0.091 Sum_probs=63.1
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
=.|+|||++|++=|.| ..+.||.... +.. ...+... .+. + -+.-|..||+
T Consensus 19 ~~fsp~~~~l~s~~~d-g~v~lWd~~~-------~~~------------------~~~~~~~-~~~-v--~~~~~~~~~~ 68 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYS-GRVELWNYET-------QVE------------------VRSIQVT-ETP-V--RAGKFIARKN 68 (304)
T ss_dssp EEECSSSSEEEEEETT-SEEEEEETTT-------TEE------------------EEEEECC-SSC-E--EEEEEEGGGT
T ss_pred EEECCCCCEEEEEcCC-CcEEEEECCC-------Cce------------------eEEeecc-CCc-E--EEEEEeCCCC
Confidence 3699999999998877 4688888751 100 0111111 111 1 1345778899
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeeecccEE
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTI 209 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtI 209 (534)
+++.|+. |-++.++|+++|...-...-+.+.|. .|.+. +.+||.-| .-.+|
T Consensus 69 ~l~s~s~---------------------d~~i~vwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~l~sgs-~D~~v 121 (304)
T 2ynn_A 69 WIIVGSD---------------------DFRIRVFNYNTGEKVVDFEAHPDYIR-----SIAVHPTKPYVLSGS-DDLTV 121 (304)
T ss_dssp EEEEEET---------------------TSEEEEEETTTCCEEEEEECCSSCEE-----EEEECSSSSEEEEEE-TTSCE
T ss_pred EEEEECC---------------------CCEEEEEECCCCcEEEEEeCCCCcEE-----EEEEcCCCCEEEEEC-CCCeE
Confidence 8877543 23688999999987655544444332 11121 23444333 44788
Q ss_pred EEEEEcc
Q 009465 210 HILQVRD 216 (534)
Q Consensus 210 hi~qI~~ 216 (534)
.|+.+..
T Consensus 122 ~lWd~~~ 128 (304)
T 2ynn_A 122 KLWNWEN 128 (304)
T ss_dssp EEEEGGG
T ss_pred EEEECCC
Confidence 8888764
No 49
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=72.77 E-value=27 Score=34.81 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.6
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
--.|+|||++|+|-+.....+.||...
T Consensus 107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~ 133 (450)
T 2vdu_B 107 NLRLTSDESRLIACADSDKSLLVFDVD 133 (450)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEECc
Confidence 347999999998777777889999986
No 50
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=72.70 E-value=47 Score=32.14 Aligned_cols=27 Identities=7% Similarity=0.226 Sum_probs=23.2
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-=.|+|||++|++=|.|.+-+.||...
T Consensus 200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp EEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 347999999999999998768999876
No 51
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=72.69 E-value=8.6 Score=39.94 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=22.5
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEe
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVL 174 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~ 174 (534)
..-|..||+++. ++. .. ...+++++|+++|...
T Consensus 199 ~~~~SpDG~~l~--~~~-~~----------------~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 199 SASISPGMKVTA--GLE-TA----------------REARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEECTTSCEEE--EEE-CS----------------SCEEEEEECTTTCCEE
T ss_pred cceECCCCCEEE--Ecc-CC----------------CeeEEEEEcCCCCcEE
Confidence 345778999876 222 01 1267999999999876
No 52
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=72.51 E-value=33 Score=32.06 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=20.5
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|+|||++|++-|.|. .+.||+..
T Consensus 16 ~~s~~g~~las~s~D~-~v~iw~~~ 39 (297)
T 2pm7_B 16 VMDYYGKRMATCSSDK-TIKIFEVE 39 (297)
T ss_dssp EECTTSSEEEEEETTS-CEEEEEBC
T ss_pred EECCCCCEEEEEeCCC-EEEEEecC
Confidence 5999999999988875 58899876
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=71.98 E-value=61 Score=29.80 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=19.1
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|+|||++|++=|.|. .+.||...
T Consensus 222 ~~s~~~~~l~s~s~Dg-~i~iwd~~ 245 (340)
T 4aow_A 222 TVSPDGSLCASGGKDG-QAMLWDLN 245 (340)
T ss_dssp EECTTSSEEEEEETTC-EEEEEETT
T ss_pred EECCCCCEEEEEeCCC-eEEEEEec
Confidence 5899999999888775 57777665
No 54
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=71.29 E-value=64 Score=29.78 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=62.6
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCc
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGN 130 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dg 130 (534)
-=+|+|||++|++-+.|. .|.||.... +.. ..++. .+.+... +.-|..||
T Consensus 37 ~~~~s~~~~~l~~~~~dg-~i~vwd~~~-------~~~------------------~~~~~-~h~~~v~---~~~~~~~~ 86 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKDS-SASVWYSLN-------GER------------------LGTLD-GHTGTIW---SIDVDCFT 86 (369)
T ss_dssp EEEECTTSCEEEEEESSS-CEEEEETTT-------CCE------------------EEEEC-CCSSCEE---EEEECTTS
T ss_pred EEEEcCCCCEEEEEeCCC-EEEEEeCCC-------chh------------------hhhhh-hcCCcEE---EEEEcCCC
Confidence 346999999999887765 678887541 100 00000 1112211 23456788
Q ss_pred eEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeec----c
Q 009465 131 QFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLR----Y 206 (534)
Q Consensus 131 ryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q----~ 206 (534)
++++.++.. =++.++|+.+|...-..........++-+. -+..|++.+-. .
T Consensus 87 ~~l~s~~~d---------------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 87 KYCVTGSAD---------------------YSIKLWDVSNGQCVATWKSPVPVKRVEFSP----CGNYFLAILDNVMKNP 141 (369)
T ss_dssp SEEEEEETT---------------------TEEEEEETTTCCEEEEEECSSCEEEEEECT----TSSEEEEEECCBTTBC
T ss_pred CEEEEEeCC---------------------CeEEEEECCCCcEEEEeecCCCeEEEEEcc----CCCEEEEecCCccCCC
Confidence 888765432 268899999998877766444433333111 13334433322 2
Q ss_pred cEEEEEEEcc
Q 009465 207 QTIHILQVRD 216 (534)
Q Consensus 207 QtIhi~qI~~ 216 (534)
-+|+++.+..
T Consensus 142 g~i~~~d~~~ 151 (369)
T 3zwl_B 142 GSINIYEIER 151 (369)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEEEEecC
Confidence 6888888864
No 55
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=71.20 E-value=56 Score=31.04 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=21.2
Q ss_pred eeeeCCCCCeEEEeeCCC--ceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRNH--QDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq--~~L~vYry~ 77 (534)
--.|+|||++|++-+.|. ..|.||...
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 347899999998888773 678888876
No 56
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=70.86 E-value=67 Score=34.56 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=21.4
Q ss_pred cceeeeeeecccEEEEEEEccCCeEEEeeee-CC
Q 009465 196 DDLLAIVSLRYQTIHILQVRDLGNLVDVRTI-GS 228 (534)
Q Consensus 196 ~dlLAILS~q~QtIhi~qI~~~G~fv~vrtI-G~ 228 (534)
+..|.|-+...-+|.++... +|+++..-.+ |.
T Consensus 353 gr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg~ 385 (567)
T 1qks_A 353 HRYFITAANARNKLVVIDTK-EGKLVAIEDTGGQ 385 (567)
T ss_dssp SCEEEEEEGGGTEEEEEETT-TTEEEEEEECSSS
T ss_pred CCEEEEEeCCCCeEEEEECC-CCcEEEEEeccCc
Confidence 45566666667778887765 5887766666 43
No 57
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=70.46 E-value=55 Score=31.15 Aligned_cols=34 Identities=3% Similarity=-0.225 Sum_probs=24.1
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEe
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVL 174 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~ 174 (534)
.|..||+.+++++... + -.+.+++++|+++|...
T Consensus 244 ~~spdg~~l~~~~~~~--~--------------~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLK--G--------------SPDRFIYSADPETLENR 277 (388)
T ss_dssp EECTTSSCEEEEEEET--T--------------CCCEEEEEECTTTCCEE
T ss_pred eECCCCCEEEEEecCC--C--------------CCcceEEEEecCCCceE
Confidence 4889999988765431 0 12357999999999753
No 58
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=68.99 E-value=13 Score=35.49 Aligned_cols=14 Identities=7% Similarity=-0.016 Sum_probs=11.6
Q ss_pred eEEEEEEEccCCeE
Q 009465 160 KITFHLLRLEDGVV 173 (534)
Q Consensus 160 ~ytfhlVdL~~G~v 173 (534)
+..++++|+++|.+
T Consensus 319 ~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 319 DPFLYVLNTKAKSA 332 (396)
T ss_dssp CCEEEEEETTTTBC
T ss_pred CCcEEEEecccCce
Confidence 46799999999974
No 59
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=68.89 E-value=49 Score=31.58 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=62.2
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
-.|+|||++|++-+.|. .|.||.... +.. ..++. .+.+. + -+.-|..||+
T Consensus 170 ~~~spdg~~lasg~~dg-~i~iwd~~~-------~~~------------------~~~~~-~h~~~-v--~~l~~spd~~ 219 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDG-IINIFDIAT-------GKL------------------LHTLE-GHAMP-I--RSLTFSPDSQ 219 (321)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEETTT-------TEE------------------EEEEC-CCSSC-C--CEEEECTTSC
T ss_pred EEECCCCCEEEEEcCCC-eEEEEECCC-------CcE------------------EEEEc-ccCCc-e--eEEEEcCCCC
Confidence 37999999999888775 578887651 100 00000 00111 0 1345678898
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeeeeeecccEE
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTI 209 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtI 209 (534)
+++.|+.- -++.|+|+.+|....+..-+.+.|. .|... +..|+.-|- -.+|
T Consensus 220 ~l~s~s~d---------------------g~i~iwd~~~~~~~~~~~~h~~~v~-----~~~~sp~~~~l~s~s~-D~~v 272 (321)
T 3ow8_A 220 LLVTASDD---------------------GYIKIYDVQHANLAGTLSGHASWVL-----NVAFCPDDTHFVSSSS-DKSV 272 (321)
T ss_dssp EEEEECTT---------------------SCEEEEETTTCCEEEEECCCSSCEE-----EEEECTTSSEEEEEET-TSCE
T ss_pred EEEEEcCC---------------------CeEEEEECCCcceeEEEcCCCCceE-----EEEECCCCCEEEEEeC-CCcE
Confidence 87665332 2478899999887654433333221 11121 345554443 4688
Q ss_pred EEEEEccCCeEE
Q 009465 210 HILQVRDLGNLV 221 (534)
Q Consensus 210 hi~qI~~~G~fv 221 (534)
.|+.+. +|+.+
T Consensus 273 ~iwd~~-~~~~~ 283 (321)
T 3ow8_A 273 KVWDVG-TRTCV 283 (321)
T ss_dssp EEEETT-TTEEE
T ss_pred EEEeCC-CCEEE
Confidence 999876 36543
No 60
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=68.75 E-value=70 Score=29.56 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=30.3
Q ss_pred CCCCCeeeEecCCCCeeeEEEecCCCCCCCCCccceeEEEEecCCCceEEEEE
Q 009465 466 STDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQ 518 (534)
Q Consensus 466 ~~e~PIrF~sR~~p~~lkFki~~g~~~~~~~~~~rr~vaf~FHP~~PFaiSvq 518 (534)
+.|.-|++++-.+ +.+..++... .....+-.|||..++..|.-
T Consensus 256 ~~dg~i~vwd~~~-~~~~~~~~~h---------~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 256 SEDNLVYIWNLQT-KEIVQKLQGH---------TDVVISTACHPTENIIASAA 298 (312)
T ss_dssp CTTSCEEEEETTT-CCEEEEECCC---------SSCEEEEEECSSSSEEEEEE
T ss_pred CCCCEEEEEECCC-chhhhhhhcc---------CCcEEEEeecCcCCceEEEE
Confidence 3456699999888 6555555421 13477888999999988873
No 61
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=68.53 E-value=81 Score=30.77 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=19.8
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
=.|+|||++|++=|.|. .|.||...
T Consensus 262 v~~~~~g~~l~s~s~d~-~v~~wd~~ 286 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDR-SVKLWNLQ 286 (393)
T ss_dssp EEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred EEECCCCCEEEEEeCCC-EEEEEECC
Confidence 36999999998877775 68899876
No 62
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=66.41 E-value=78 Score=29.21 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred eCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccc-----------------chhhhhhheeeEEEcCCCC
Q 009465 54 FTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKA-----------------KRFESFFTQLYSVTLASCN 116 (534)
Q Consensus 54 FTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~-----------------~~F~~fF~~~~~~~l~~~~ 116 (534)
|+|||+ |++.+.+ |.++.-. ........+... ..-...|...+.+.+..++
T Consensus 155 ~s~dg~-l~~~~~~---i~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 155 AADDGS-LYVAGPD---IYKMDVK--------TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp ECTTSC-EEEESSS---EEEECTT--------TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred ECCCCc-EEEccCc---EEEEeCC--------CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Q ss_pred eee------------------------------eeeEEEEec-CceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEE
Q 009465 117 ELI------------------------------CKDFFLSME-GNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHL 165 (534)
Q Consensus 117 e~L------------------------------~refsLft~-dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhl 165 (534)
... .-....+.. ||+++.++ +-++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----------------------~~~v~~ 279 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----------------------LNRLAK 279 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----------------------ESEEEE
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----------------------cCeEEE
Q ss_pred EEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCeEEEeeeeC
Q 009465 166 LRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 227 (534)
Q Consensus 166 VdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG 227 (534)
+|+++|.+............++-+.. ++.|++ +-...+|.++.+. +|+.+..-.+|
T Consensus 280 ~d~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~~-~~~~~~v~v~d~~-~~~~~~~~~~~ 335 (349)
T 1jmx_B 280 YDLKQRKLIKAANLDHTYYCVAFDKK----GDKLYL-GGTFNDLAVFNPD-TLEKVKNIKLP 335 (349)
T ss_dssp EETTTTEEEEEEECSSCCCEEEECSS----SSCEEE-ESBSSEEEEEETT-TTEEEEEEECS
T ss_pred EECccCeEEEEEcCCCCccceEECCC----CCEEEE-ecCCCeEEEEecc-ccceeeeeecC
No 63
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=65.19 E-value=55 Score=35.07 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=33.1
Q ss_pred eEEEEEEEccCCeEee--eeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCe
Q 009465 160 KITFHLLRLEDGVVLD--EKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGN 219 (534)
Q Consensus 160 ~ytfhlVdL~~G~v~D--~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~ 219 (534)
+.+++++|+.+|...+ ..+-..+...| .++.+.++-|.+.....-+..|+.+..+|.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l---~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEIVPEDSSASL---LSVSIVGGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEEECCCSSCEE---EEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCEEEEEeCCCCCccCCeEEecCCCCCeE---EEEEEECCEEEEEEEECCEEEEEEEeCCCC
Confidence 5678999998885311 11111111112 256666777777777777777777754465
No 64
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=64.80 E-value=26 Score=35.10 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=23.5
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeE
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV 173 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v 173 (534)
..-|..||+++++++... ...+++++|+.+|.+
T Consensus 358 ~~~~spdg~~l~~~s~~~------------------~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 358 TPSLAPNGTMVIYSSSQG------------------MGSVLNLVSTDGRFK 390 (415)
T ss_dssp EEEECTTSSEEEEEEEET------------------TEEEEEEEETTSCCE
T ss_pred CeEEcCCCCEEEEEEcCC------------------CccEEEEEECCCCcE
Confidence 456789999998876441 135799999986643
No 65
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=64.65 E-value=1.1e+02 Score=29.87 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcC-CCCeeeeeeEEEEecCc
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLA-SCNELICKDFFLSMEGN 130 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~-~~~e~L~refsLft~dg 130 (534)
-.|+|||++|++=|.| ..|.||.... +.. . ..+. +.+... +.-|..||
T Consensus 129 v~~s~dg~~l~s~~~d-~~i~iwd~~~-------~~~------------------~--~~~~~h~~~v~---~~~~~p~~ 177 (393)
T 1erj_A 129 VCFSPDGKFLATGAED-RLIRIWDIEN-------RKI------------------V--MILQGHEQDIY---SLDYFPSG 177 (393)
T ss_dssp EEECTTSSEEEEEETT-SCEEEEETTT-------TEE------------------E--EEECCCSSCEE---EEEECTTS
T ss_pred EEECCCCCEEEEEcCC-CeEEEEECCC-------CcE------------------E--EEEccCCCCEE---EEEEcCCC
Confidence 3699999998877766 4688887651 100 0 0011 111111 33456788
Q ss_pred eEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEE
Q 009465 131 QFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIH 210 (534)
Q Consensus 131 ryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIh 210 (534)
++++.|+. |=++.++|+.+|...-..........++-+. --+.+||.-|. -.+|.
T Consensus 178 ~~l~s~s~---------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~s~-d~~v~ 232 (393)
T 1erj_A 178 DKLVSGSG---------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP---GDGKYIAAGSL-DRAVR 232 (393)
T ss_dssp SEEEEEET---------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECS---TTCCEEEEEET-TSCEE
T ss_pred CEEEEecC---------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEEC---CCCCEEEEEcC-CCcEE
Confidence 88765432 2368899999998654443332222221100 02345555443 46788
Q ss_pred EEEEccCCeEE
Q 009465 211 ILQVRDLGNLV 221 (534)
Q Consensus 211 i~qI~~~G~fv 221 (534)
|+.+. .|+.+
T Consensus 233 iwd~~-~~~~~ 242 (393)
T 1erj_A 233 VWDSE-TGFLV 242 (393)
T ss_dssp EEETT-TCCEE
T ss_pred EEECC-CCcEE
Confidence 88876 36544
No 66
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=63.22 E-value=1.3e+02 Score=30.12 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=42.8
Q ss_pred EEEEEEccCCeEeeeeeeccceEEeeecceeeeecc---eeeeeeecccEEEEEEEccCCeEEEe-eeeCC
Q 009465 162 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDD---LLAIVSLRYQTIHILQVRDLGNLVDV-RTIGS 228 (534)
Q Consensus 162 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~d---lLAILS~q~QtIhi~qI~~~G~fv~v-rtIG~ 228 (534)
++.+||++++++..+..... .-.|+.+-.| +|.+..-..-+|.|+... +|+.+.. -.+|+
T Consensus 299 ~V~VID~~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~-t~~vv~~i~~vG~ 362 (373)
T 2mad_H 299 EVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHIYDAG-AGDQDQSTVELGS 362 (373)
T ss_pred eEEEEECCCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCCCeEEEEECC-CCCEEeeecCCCC
Confidence 68999999999988775543 2345555544 666665556899999876 5888766 56776
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=63.15 E-value=1.1e+02 Score=29.61 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=70.5
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCC--CCeeeeeeEEEEecC
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLAS--CNELICKDFFLSMEG 129 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~--~~e~L~refsLft~d 129 (534)
=.|+|||++|++-|.|. .|.||+..... . +.+ .+ .+. ......+.+.+ .++.+..=..++.+|
T Consensus 117 ~~~~~~~~~l~s~s~dg-~i~vwd~~~~~---~-~~~------~~--~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 117 ITMIPNFDAFAVSSKDG-QIIVLKVNHYQ---Q-ESE------VK--FLN--CECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp EEECTTSSEEEEEETTS-EEEEEEEEEEE---E-TTE------EE--EEE--EEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred EEEeCCCCEEEEEeCCC-EEEEEEecccc---C-Cce------ee--ccc--cceeEEEEccCcccccCceEEEEEEcCC
Confidence 46999999999888874 68888773100 0 100 00 000 00223344433 333333333446778
Q ss_pred ceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeee--ccceEEeeecceeee--ecceeeeeeec
Q 009465 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF--HNDFINLAHNMGVFL--YDDLLAIVSLR 205 (534)
Q Consensus 130 gryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f--~~D~I~LsHN~Gv~L--~~dlLAILS~q 205 (534)
|.+++.|+.. =++.++|+.+|...-+..- +.+.|. .+.+ -+++||.-|-
T Consensus 182 ~~~l~~~~~d---------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~-----~~~~s~~~~~l~s~~~- 234 (437)
T 3gre_A 182 KSLLVALTNL---------------------SRVIIFDIRTLERLQIIENSPRHGAVS-----SICIDEECCVLILGTT- 234 (437)
T ss_dssp CEEEEEEETT---------------------SEEEEEETTTCCEEEEEECCGGGCCEE-----EEEECTTSCEEEEEET-
T ss_pred CCEEEEEeCC---------------------CeEEEEeCCCCeeeEEEccCCCCCceE-----EEEECCCCCEEEEEcC-
Confidence 8888776443 2688999999987665543 222221 1111 1445555444
Q ss_pred ccEEEEEEEccCCeEEEe
Q 009465 206 YQTIHILQVRDLGNLVDV 223 (534)
Q Consensus 206 ~QtIhi~qI~~~G~fv~v 223 (534)
--+|.|+.+.. |+.+..
T Consensus 235 dg~i~iwd~~~-~~~~~~ 251 (437)
T 3gre_A 235 RGIIDIWDIRF-NVLIRS 251 (437)
T ss_dssp TSCEEEEETTT-TEEEEE
T ss_pred CCeEEEEEcCC-ccEEEE
Confidence 36788888764 665543
No 68
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=62.31 E-value=48 Score=35.10 Aligned_cols=28 Identities=21% Similarity=0.148 Sum_probs=21.3
Q ss_pred eeeeCCCCCeEEEeeC-CC----ceEEEEeecC
Q 009465 51 FRKFTDDGQYLISFSR-NH----QDLIVYRPMW 78 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~-dq----~~L~vYry~g 78 (534)
--.|||||++|+.-+. |. ..|.++.-.+
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~ 73 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS 73 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTT
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCC
Confidence 4579999999988887 54 3777777653
No 69
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=61.88 E-value=1e+02 Score=33.00 Aligned_cols=76 Identities=13% Similarity=-0.019 Sum_probs=40.3
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEe--eeeeeccceEEeeecceeeee-cceeee
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVL--DEKVFHNDFINLAHNMGVFLY-DDLLAI 201 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~--D~~~f~~D~I~LsHN~Gv~L~-~dlLAI 201 (534)
.+..||+.+++.+.. .-.+..++++|+.+|... -..+-..|...+ .++... ++-|.+
T Consensus 292 ~~s~dg~~l~~~s~~-----------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNR-----------------HSPNYRLINIDFTDPEESKWKVLVPEHEKDVL---EWVACVRSNFLVL 351 (710)
T ss_dssp EEEEETTEEEEEECT-----------------TCTTCEEEEEETTSCCGGGCEEEECCCSSCEE---EEEEEETTTEEEE
T ss_pred EEeccCCEEEEEECC-----------------CCCCCEEEEEeCCCCCcccceeccCCCCCCeE---EEEEEEcCCEEEE
Confidence 467788888876432 012467889999888421 111111121111 145555 666666
Q ss_pred eeecccEEEEEEEcc-CCeE
Q 009465 202 VSLRYQTIHILQVRD-LGNL 220 (534)
Q Consensus 202 LS~q~QtIhi~qI~~-~G~f 220 (534)
.+...-..+|+.+.. +|+.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp EEEETTEEEEEEEETTTCCE
T ss_pred EEEECCEEEEEEEECCCCCE
Confidence 666655555555532 4653
No 70
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=61.12 E-value=1.2e+02 Score=29.20 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=21.5
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 49 ~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
..--.|+|||++|++=|.|. .+.||...
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg-~v~vWd~~ 94 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDG-KVIVWDSF 94 (354)
T ss_dssp EEEEEECTTSSEEEEEETTS-EEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCC-eEEEEECC
Confidence 34457999999999888876 57888743
No 71
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=59.59 E-value=1.4e+02 Score=33.79 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=20.5
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|+|||++|++-|.|. .|.||...
T Consensus 663 ~~~s~~~~~l~s~~~d~-~v~vwd~~ 687 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADK-KVKIWDSA 687 (1249)
T ss_dssp EEECTTSSEEEEEETTS-EEEEEETT
T ss_pred EEEecCCCEEEEEeCCC-eEEEEECC
Confidence 47999999999988775 58888765
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=58.94 E-value=1.1e+02 Score=32.55 Aligned_cols=111 Identities=8% Similarity=0.075 Sum_probs=64.7
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceE
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgry 132 (534)
.|+|||++|++-+.| ..|.||.... +.. ..++. .+.+.. -+.-|..||++
T Consensus 20 ~~sp~~~~la~~~~~-g~v~iwd~~~-------~~~------------------~~~~~-~~~~~v---~~~~~s~~~~~ 69 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYS-GRVEIWNYET-------QVE------------------VRSIQ-VTETPV---RAGKFIARKNW 69 (814)
T ss_dssp EECSSSSEEEEEETT-SEEEEEETTT-------TEE------------------EEEEE-CCSSCE---EEEEEEGGGTE
T ss_pred EECCCCCEEEEEeCC-CEEEEEECCC-------Cce------------------EEEEe-cCCCcE---EEEEEeCCCCE
Confidence 699999998887765 5788998751 100 00111 011111 14557789998
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEE---eeecceeeeecceeeeeeecccEE
Q 009465 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFIN---LAHNMGVFLYDDLLAIVSLRYQTI 209 (534)
Q Consensus 133 vivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~---LsHN~Gv~L~~dlLAILS~q~QtI 209 (534)
+++|+.. -++.++|+.+|...-+..-+.+.|. ++.+ +..|++-+ .-.+|
T Consensus 70 l~~~~~d---------------------g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~-~dg~i 121 (814)
T 3mkq_A 70 IIVGSDD---------------------FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT------KPYVLSGS-DDLTV 121 (814)
T ss_dssp EEEEETT---------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECSS------SSEEEEEE-TTSEE
T ss_pred EEEEeCC---------------------CeEEEEECCCCcEEEEEecCCCCEEEEEEeCC------CCEEEEEc-CCCEE
Confidence 8776432 3588999999987665554444332 1111 23444333 45788
Q ss_pred EEEEEccCCeEE
Q 009465 210 HILQVRDLGNLV 221 (534)
Q Consensus 210 hi~qI~~~G~fv 221 (534)
.|+.+...+..+
T Consensus 122 ~vw~~~~~~~~~ 133 (814)
T 3mkq_A 122 KLWNWENNWALE 133 (814)
T ss_dssp EEEEGGGTSEEE
T ss_pred EEEECCCCceEE
Confidence 888886533443
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=58.35 E-value=1.1e+02 Score=34.70 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=35.1
Q ss_pred ceEEEEEEEccCCeEeeeeeeccceEEeeecceeee--ecceeeeeeecccEEEEEEEccCCeEEEeee
Q 009465 159 EKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFL--YDDLLAIVSLRYQTIHILQVRDLGNLVDVRT 225 (534)
Q Consensus 159 e~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L--~~dlLAILS~q~QtIhi~qI~~~G~fv~vrt 225 (534)
.+-++.++|+.+|.......-+.+.|. ++.. -++.|+.-|-. .+|.++.+.. |+....-.
T Consensus 721 ~d~~v~vwd~~~~~~~~~~~~h~~~v~-----~~~~sp~~~~l~s~s~d-g~v~vwd~~~-~~~~~~~~ 782 (1249)
T 3sfz_A 721 NDFFLKLWDLNQKECRNTMFGHTNSVN-----HCRFSPDDELLASCSAD-GTLRLWDVRS-ANERKSIN 782 (1249)
T ss_dssp TTSCEEEEETTSSSEEEEECCCSSCEE-----EEEECSSTTEEEEEESS-SEEEEEEGGG-TEEEEEEE
T ss_pred CCCeEEEEECCCcchhheecCCCCCEE-----EEEEecCCCEEEEEECC-CeEEEEeCCC-Ccccceec
Confidence 455689999999987655443333221 1111 24466665544 6899999874 55544433
No 74
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=58.14 E-value=1.8e+02 Score=31.45 Aligned_cols=71 Identities=11% Similarity=-0.083 Sum_probs=41.7
Q ss_pred ecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCe--EeeeeeeccceEEeeecceeeeecceeeeeee
Q 009465 127 MEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGV--VLDEKVFHNDFINLAHNMGVFLYDDLLAIVSL 204 (534)
Q Consensus 127 t~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~--v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~ 204 (534)
..||+.+++.|.. .-.+..++++|+.+|. ... .+-..+.+ + .++...++-|.+.+.
T Consensus 324 ~~dg~~l~~~s~~-----------------~~~~~~l~~~d~~~~~~~~~~-l~~~~~~~-l---~~~~~~~~~lv~~~~ 381 (741)
T 1yr2_A 324 DGVGDQLWFVSGD-----------------GAPLKKIVRVDLSGSTPRFDT-VVPESKDN-L---ESVGIAGNRLFASYI 381 (741)
T ss_dssp EEETTEEEEEECT-----------------TCTTCEEEEEECSSSSCEEEE-EECCCSSE-E---EEEEEEBTEEEEEEE
T ss_pred eccCCEEEEEECC-----------------CCCCCEEEEEeCCCCccccEE-EecCCCCe-E---EEEEEECCEEEEEEE
Confidence 4788888775432 1124678999998862 221 11112221 2 256666787777777
Q ss_pred cccEEEEEEEccCCe
Q 009465 205 RYQTIHILQVRDLGN 219 (534)
Q Consensus 205 q~QtIhi~qI~~~G~ 219 (534)
..-..+|+.+..+|.
T Consensus 382 ~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 382 HDAKSQVLAFDLDGK 396 (741)
T ss_dssp ETTEEEEEEEETTSC
T ss_pred ECCEEEEEEEeCCCC
Confidence 777777777754455
No 75
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=57.99 E-value=72 Score=31.08 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.6
Q ss_pred eeeCCCCCeEEEeeC
Q 009465 52 RKFTDDGQYLISFSR 66 (534)
Q Consensus 52 rKFTpDG~~LIaFS~ 66 (534)
-+|+|||+.|++=|.
T Consensus 36 ~~fs~dG~~l~~~sd 50 (344)
T 4gqb_B 36 ARYRSDGALLLGASS 50 (344)
T ss_dssp EEECTTSCEEEEEEC
T ss_pred EEECCCCCEEEEEeC
Confidence 479999999988773
No 76
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=57.97 E-value=37 Score=32.44 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=20.0
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
=.|+|||++|++-|.|. .|.||...
T Consensus 212 l~~spd~~~l~s~s~dg-~i~iwd~~ 236 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDG-YIKIYDVQ 236 (321)
T ss_dssp EEECTTSCEEEEECTTS-CEEEEETT
T ss_pred EEEcCCCCEEEEEcCCC-eEEEEECC
Confidence 36999999988877765 58888876
No 77
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=56.49 E-value=1.2e+02 Score=27.63 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=32.6
Q ss_pred eEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCeE
Q 009465 160 KITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNL 220 (534)
Q Consensus 160 ~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~f 220 (534)
+=+++++|+.+|...-..........++-+ --++.|++-+ ...+|+++.+.. ++.
T Consensus 204 dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~-~~~~i~~~~~~~-~~~ 258 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYC----PTGEWLAVGM-ESSNVEVLHVNK-PDK 258 (337)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEEC----TTSSEEEEEE-TTSCEEEEETTS-SCE
T ss_pred CCcEEEEECCCCceEeeecCCCceEEEEEC----CCCCEEEEEc-CCCcEEEEECCC-CCe
Confidence 446899999999877665544333222211 1134555544 446788888764 443
No 78
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=56.31 E-value=11 Score=37.14 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=53.2
Q ss_pred EEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCeEEEeeeeC-C----ccCcchHH
Q 009465 162 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG-S----FCREDDEL 236 (534)
Q Consensus 162 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG-~----fc~eDD~l 236 (534)
+++.||+++|++..+..+... .+-.|+.+.++.|-++.-+..+|.++... +++.+..=..| + .|+++..+
T Consensus 45 ~v~~iD~~tg~v~~~i~l~~~----~fgeGi~~~g~~lyv~t~~~~~v~viD~~-t~~v~~~i~~g~~~g~glt~Dg~~l 119 (266)
T 2iwa_A 45 SVRQVALQTGKVENIHKMDDS----YFGEGLTLLNEKLYQVVWLKNIGFIYDRR-TLSNIKNFTHQMKDGWGLATDGKIL 119 (266)
T ss_dssp EEEEEETTTCCEEEEEECCTT----CCEEEEEEETTEEEEEETTCSEEEEEETT-TTEEEEEEECCSSSCCEEEECSSSE
T ss_pred EEEEEECCCCCEEEEEecCCC----cceEEEEEeCCEEEEEEecCCEEEEEECC-CCcEEEEEECCCCCeEEEEECCCEE
Confidence 599999999999988776432 23358999999999999999999998865 56666544446 2 34444444
Q ss_pred HHh
Q 009465 237 FLI 239 (534)
Q Consensus 237 ~~~ 239 (534)
+++
T Consensus 120 ~vs 122 (266)
T 2iwa_A 120 YGS 122 (266)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 79
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=55.97 E-value=36 Score=33.11 Aligned_cols=25 Identities=0% Similarity=0.020 Sum_probs=19.7
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|+|||..++|.+.....|.||..+
T Consensus 233 ~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 233 TWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp EECTTSTTEEEEEESSSCEEEEESS
T ss_pred hhhhcccceEEEeecccceeEEECC
Confidence 5899988877777666778888876
No 80
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=55.06 E-value=1.3e+02 Score=28.82 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=19.8
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
=.|+|||++|++-|.|. .|.||...
T Consensus 145 ~~~~~~~~~l~s~s~d~-~i~iwd~~ 169 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDM-QLKIWSVK 169 (420)
T ss_dssp EEECTTSSEEEEEETTS-EEEEEETT
T ss_pred EEECCCCCEEEEEeCCC-eEEEEeCC
Confidence 46999999888877775 68888765
No 81
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=54.79 E-value=23 Score=35.97 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=19.7
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|||||++|++-|.|. .|.||.+.
T Consensus 515 ~~s~dg~~l~s~~~dg-~v~lwd~~ 538 (577)
T 2ymu_A 515 AFSPDGQTIASASDDK-TVKLWNRN 538 (577)
T ss_dssp EECTTSSCEEEEETTS-EEEEECTT
T ss_pred EEcCCCCEEEEEECcC-EEEEEeCC
Confidence 5999999999888775 68888754
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=54.25 E-value=54 Score=31.74 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=20.2
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-=.|+|||++|++ + +...|.||...
T Consensus 182 ~~~~~~~~~~l~s-~-~d~~i~iwd~~ 206 (447)
T 3dw8_B 182 SISINSDYETYLS-A-DDLRINLWHLE 206 (447)
T ss_dssp EEEECTTSSEEEE-E-CSSEEEEEETT
T ss_pred EEEEcCCCCEEEE-e-CCCeEEEEECC
Confidence 3469999999887 5 57789999876
No 83
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=53.92 E-value=1e+02 Score=32.92 Aligned_cols=31 Identities=6% Similarity=-0.006 Sum_probs=21.1
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccC
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLED 170 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~ 170 (534)
.-++.||+++++++..... .+-.++++|+.+
T Consensus 238 ~~~SpDg~~l~~~~~~~~~----------------~~~~l~~~d~~~ 268 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCD----------------PVNRLWYCDLQQ 268 (710)
T ss_dssp EEECTTSCEEEEEEECSSS----------------SCCEEEEEEGGG
T ss_pred EEEcCCCCEEEEEEEccCC----------------CccEEEEEECcc
Confidence 3478999999987653100 144688999987
No 84
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=53.63 E-value=2e+02 Score=29.54 Aligned_cols=30 Identities=13% Similarity=-0.045 Sum_probs=21.9
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeecC
Q 009465 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 49 ~~lrKFTpDG~~LIaFS~dq~~L~vYry~g 78 (534)
++-=.|||||++|+.-|.....+.||...|
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~ 53 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDG 53 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcC
Confidence 555569999998866565356788998654
No 85
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=53.08 E-value=1.2e+02 Score=30.60 Aligned_cols=120 Identities=12% Similarity=-0.038 Sum_probs=65.4
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCC-CeeeeeeEEEEecC
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASC-NELICKDFFLSMEG 129 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~-~e~L~refsLft~d 129 (534)
--.|+|||+++++.......+.||+... +.. ..++.-..+ +..+ -+.-|..|
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~-------~~~------------------~~~~~~~~~~~~~v--~~~~~~~~ 217 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPP-------FKF------------------SASDRTHHKQGSFV--RDVEFSPD 217 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTT-------BEE------------------EEEECSSSCTTCCE--EEEEECST
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCC-------cce------------------eeeecccCCCCceE--EEEEECCC
Confidence 3469999997666666667888887541 100 011110000 0011 13456677
Q ss_pred -ceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeee-e---eccceEEeeecceeee-ecceeeeee
Q 009465 130 -NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK-V---FHNDFINLAHNMGVFL-YDDLLAIVS 203 (534)
Q Consensus 130 -gryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~-~---f~~D~I~LsHN~Gv~L-~~dlLAILS 203 (534)
|++++.++.. =++.++|+.+|...... . -+.+.|. ++.. -++.|+.-+
T Consensus 218 ~~~~l~~~~~d---------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~l~~~~ 271 (615)
T 1pgu_A 218 SGEFVITVGSD---------------------RKISCFDGKSGEFLKYIEDDQEPVQGGIF-----ALSWLDSQKFATVG 271 (615)
T ss_dssp TCCEEEEEETT---------------------CCEEEEETTTCCEEEECCBTTBCCCSCEE-----EEEESSSSEEEEEE
T ss_pred CCCEEEEEeCC---------------------CeEEEEECCCCCEeEEecccccccCCceE-----EEEEcCCCEEEEEc
Confidence 8988876543 14788999999876554 1 1222221 1112 344555555
Q ss_pred ecccEEEEEEEccCCeEEEeee
Q 009465 204 LRYQTIHILQVRDLGNLVDVRT 225 (534)
Q Consensus 204 ~q~QtIhi~qI~~~G~fv~vrt 225 (534)
- --+|.++.+. .|+.+..-.
T Consensus 272 ~-d~~i~~wd~~-~~~~~~~~~ 291 (615)
T 1pgu_A 272 A-DATIRVWDVT-TSKCVQKWT 291 (615)
T ss_dssp T-TSEEEEEETT-TTEEEEEEE
T ss_pred C-CCcEEEEECC-CCcEEEEEc
Confidence 3 3678999887 466655433
No 86
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=52.98 E-value=1.3e+02 Score=27.17 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=60.4
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCceE
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgry 132 (534)
-||||| +||.+.|. .|.|+... + ++ ...++.+...+..+. +.-|..+|++
T Consensus 32 ~WS~~~--~lAvg~D~-tV~iWd~~--t-----g~------------------~~~~~~~~~~~~~V~--~v~~~~~~~~ 81 (318)
T 4ggc_A 32 DWSSGN--VLAVALDN-SVYLWSAS--S-----GD------------------ILQLLQMEQPGEYIS--SVAWIKEGNY 81 (318)
T ss_dssp EECTTS--EEEEEETT-EEEEEETT--T-----CC------------------EEEEEECCSTTCCEE--EEEECTTSSE
T ss_pred EECCCC--EEEEEeCC-EEEEEECC--C-----CC------------------EEEEEEecCCCCeEE--EEEECCCCCE
Confidence 489987 78888875 58888764 1 11 111222222222221 4567889998
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEE
Q 009465 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHIL 212 (534)
Q Consensus 133 vivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~ 212 (534)
++.|+.- -++.|+|+++|...-...-+.+.+.- +...+++|+.-+-. -++.+.
T Consensus 82 l~sgs~D---------------------g~v~iw~~~~~~~~~~~~~h~~~~~~-----~~~~~~~l~s~~~~-~~~~~~ 134 (318)
T 4ggc_A 82 LAVGTSS---------------------AEVQLWDVQQQKRLRNMTSHSARVGS-----LSWNSYILSSGSRS-GHIHHH 134 (318)
T ss_dssp EEEEETT---------------------SEEEEEETTTTEEEEEEECCSSCEEE-----EEEETTEEEEEETT-SEEEEE
T ss_pred EEEEECC---------------------CcEEEeecCCceeEEEecCccceEEE-----eecCCCEEEEEecC-CceEee
Confidence 8765432 36889999999887766655554432 33345566554443 334444
Q ss_pred EE
Q 009465 213 QV 214 (534)
Q Consensus 213 qI 214 (534)
..
T Consensus 135 ~~ 136 (318)
T 4ggc_A 135 DV 136 (318)
T ss_dssp ET
T ss_pred ec
Confidence 43
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=50.45 E-value=78 Score=31.31 Aligned_cols=26 Identities=4% Similarity=0.096 Sum_probs=20.7
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|+|+|+++++-+..-..+.||..+
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETT
T ss_pred eeecCCCceEEEEecCcceeeEEecc
Confidence 36999999888777666778898876
No 88
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=50.26 E-value=66 Score=31.35 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.9
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|+|||++|++=|.|. .|.|+...
T Consensus 134 ~~spdg~~l~sgs~d~-~i~iwd~~ 157 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDI-CIKVWDLA 157 (344)
T ss_dssp EECTTSSEEEEEETTS-CEEEEETT
T ss_pred EECCCCCEEEEEeCCC-eEEEEECC
Confidence 5899999999888776 57777654
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=49.91 E-value=1.6e+02 Score=27.11 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=67.8
Q ss_pred eeeeCCCCCeEEEeeCC----CceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEE
Q 009465 51 FRKFTDDGQYLISFSRN----HQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLS 126 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~d----q~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLf 126 (534)
--.|+|||++|++-+.+ ...|.+|.......... -... ... ....+....+... --+.-|
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~-~~~~-~~~------------~~~~~~~~~~~~~--~~~~~~ 183 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE-LTKV-SEE------------PIHKIITHEGLDA--ATVAGW 183 (369)
T ss_dssp EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC-EEEE-CSS------------CSEEEECCTTCCC--EEEEEE
T ss_pred EEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee-eccc-ccc------------eeeeccCCcCccc--eeEEEE
Confidence 34699999999998877 36788888874221111 0000 000 0111111111111 124456
Q ss_pred ecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccC-CeEeeeeeeccceEEeeecceeee--ecceeeeee
Q 009465 127 MEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLED-GVVLDEKVFHNDFINLAHNMGVFL--YDDLLAIVS 203 (534)
Q Consensus 127 t~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~-G~v~D~~~f~~D~I~LsHN~Gv~L--~~dlLAILS 203 (534)
..||+++++|+.. =++.++|+.+ +.......-+.+.|. ++.+ -++.|++-+
T Consensus 184 ~~~~~~l~~~~~d---------------------g~i~i~d~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 184 STKGKYIIAGHKD---------------------GKISKYDVSNNYEYVDSIDLHEKSIS-----DMQFSPDLTYFITSS 237 (369)
T ss_dssp CGGGCEEEEEETT---------------------SEEEEEETTTTTEEEEEEECCSSCEE-----EEEECTTSSEEEEEE
T ss_pred cCCCCEEEEEcCC---------------------CEEEEEECCCCcEeEEEEecCCCcee-----EEEECCCCCEEEEec
Confidence 7789988776432 2578889988 666555444333322 1111 134454444
Q ss_pred ecccEEEEEEEccCCeEEEe
Q 009465 204 LRYQTIHILQVRDLGNLVDV 223 (534)
Q Consensus 204 ~q~QtIhi~qI~~~G~fv~v 223 (534)
.--+|+|+.+.. |+.+..
T Consensus 238 -~d~~i~v~d~~~-~~~~~~ 255 (369)
T 3zwl_B 238 -RDTNSFLVDVST-LQVLKK 255 (369)
T ss_dssp -TTSEEEEEETTT-CCEEEE
T ss_pred -CCceEEEEECCC-Cceeee
Confidence 446888988864 655544
No 90
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=49.36 E-value=1.7e+02 Score=27.39 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=22.8
Q ss_pred ceeeeeCC-CCCeEEEeeCCCceEEEEeecC
Q 009465 49 HSFRKFTD-DGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 49 ~~lrKFTp-DG~~LIaFS~dq~~L~vYry~g 78 (534)
..--.|+| ||++|++-+.|. .|.||....
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg-~i~iw~~~~ 75 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDG-VIVLYDLEN 75 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTS-CEEEEECCC
T ss_pred EEEEEEecCCCCEEEEEcCCC-eEEEEECCC
Confidence 33446999 999999988875 589998873
No 91
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=49.00 E-value=1.4e+02 Score=32.09 Aligned_cols=55 Identities=11% Similarity=-0.019 Sum_probs=32.4
Q ss_pred eEEEEEEEccCCeEee--eeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCe
Q 009465 160 KITFHLLRLEDGVVLD--EKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGN 219 (534)
Q Consensus 160 ~ytfhlVdL~~G~v~D--~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~ 219 (534)
+..++.+|+.+|..-+ ..+-..+.+ + ++...++.|++.+...-.-.|+.+.-+|.
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~-~----~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQV-L----TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSC-E----EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCE-E----EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 4678999999885421 122222222 2 78888998888877764434444433344
No 92
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=47.43 E-value=2.3e+02 Score=28.41 Aligned_cols=113 Identities=8% Similarity=0.127 Sum_probs=62.8
Q ss_pred eeeeCCC-CCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEc---CCCCeeeeeeEEEE
Q 009465 51 FRKFTDD-GQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTL---ASCNELICKDFFLS 126 (534)
Q Consensus 51 lrKFTpD-G~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l---~~~~e~L~refsLf 126 (534)
-=.|+|| |++|++-+.|. .|.||.... +.. ...+.- .+.+...+ .-|
T Consensus 211 ~~~~~~~~~~~l~~~~~dg-~i~vwd~~~-------~~~------------------~~~~~~~~~~~~~~v~~---~~~ 261 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGSDR-KISCFDGKS-------GEF------------------LKYIEDDQEPVQGGIFA---LSW 261 (615)
T ss_dssp EEEECSTTCCEEEEEETTC-CEEEEETTT-------CCE------------------EEECCBTTBCCCSCEEE---EEE
T ss_pred EEEECCCCCCEEEEEeCCC-eEEEEECCC-------CCE------------------eEEecccccccCCceEE---EEE
Confidence 3478999 99888887764 677877641 100 000000 12222222 223
Q ss_pred ecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeecc-----ceEEeeecceeeeecceeee
Q 009465 127 MEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHN-----DFINLAHNMGVFLYDDLLAI 201 (534)
Q Consensus 127 t~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~-----D~I~LsHN~Gv~L~~dlLAI 201 (534)
. +|++++.++.. =++.++|+.+|...-...... ..+.+.. --++.|++
T Consensus 262 ~-~~~~l~~~~~d---------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~ 314 (615)
T 1pgu_A 262 L-DSQKFATVGAD---------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-----TGNGRIIS 314 (615)
T ss_dssp S-SSSEEEEEETT---------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-----EETTEEEE
T ss_pred c-CCCEEEEEcCC---------------------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-----CCCCeEEE
Confidence 3 88888876432 258899999998876666551 1222221 14455555
Q ss_pred eeecccEEEEEEEccCCeEE
Q 009465 202 VSLRYQTIHILQVRDLGNLV 221 (534)
Q Consensus 202 LS~q~QtIhi~qI~~~G~fv 221 (534)
-+ ...+|+++.+.. |+.+
T Consensus 315 ~~-~~g~i~~~d~~~-~~~~ 332 (615)
T 1pgu_A 315 LS-LDGTLNFYELGH-DEVL 332 (615)
T ss_dssp EE-TTSCEEEEETTE-EEEE
T ss_pred EE-CCCCEEEEECCC-CcEE
Confidence 44 357788888764 4443
No 93
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=46.99 E-value=1.7e+02 Score=26.59 Aligned_cols=26 Identities=4% Similarity=-0.059 Sum_probs=20.8
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 50 SFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.--.|+|||++|++-+ ...+.||...
T Consensus 55 ~~~~~~~~~~~l~~~~--dg~i~iw~~~ 80 (337)
T 1gxr_A 55 CAVTISNPTRHVYTGG--KGCVKVWDIS 80 (337)
T ss_dssp CEEEECSSSSEEEEEC--BSEEEEEETT
T ss_pred EEEEEecCCcEEEEcC--CCeEEEEECC
Confidence 3446999999988877 4789999886
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=46.08 E-value=95 Score=29.56 Aligned_cols=51 Identities=20% Similarity=0.110 Sum_probs=30.2
Q ss_pred ceEEEEEEEccCCeEeeeeeec--cceEEe-eecceeeeecceeeeeeecccEEEEEEEc
Q 009465 159 EKITFHLLRLEDGVVLDEKVFH--NDFINL-AHNMGVFLYDDLLAIVSLRYQTIHILQVR 215 (534)
Q Consensus 159 e~ytfhlVdL~~G~v~D~~~f~--~D~I~L-sHN~Gv~L~~dlLAILS~q~QtIhi~qI~ 215 (534)
++=+++++|+.+|....+..-. ...+.. +- +--+.+||.-| -.+|.|+.+.
T Consensus 328 ~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~----s~~g~~l~s~s--d~~i~iw~~~ 381 (383)
T 3ei3_B 328 DKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF----SPTGDVLASGM--GFNILIWNRE 381 (383)
T ss_dssp CCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE----CTTSSEEEEEE--TTEEEEEECC
T ss_pred CCCeEEEEecCCCceeeeecCCCCCceEEEEEE----ecCccEEEEec--CCcEEEEecC
Confidence 4567999999999886554431 111211 10 00245666665 5788888875
No 95
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=44.95 E-value=1.6e+02 Score=27.95 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=20.8
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
--.|+|||++|++=+.| ..+.||...
T Consensus 102 ~~~~s~~~~~l~s~~~d-~~v~iw~~~ 127 (340)
T 1got_B 102 TCAYAPSGNYVACGGLD-NICSIYNLK 127 (340)
T ss_dssp EEEECTTSSEEEEEETT-CEEEEEETT
T ss_pred EEEECCCCCEEEEEeCC-CeEEEEECc
Confidence 34699999999988877 567888765
No 96
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=43.85 E-value=1.4e+02 Score=29.44 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=27.5
Q ss_pred CCCCeeeEecCCCCeeeEEEecCCCCCCCCCccceeEEEEecCCCceEEEEEe
Q 009465 467 TDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQ 519 (534)
Q Consensus 467 ~e~PIrF~sR~~p~~lkFki~~g~~~~~~~~~~rr~vaf~FHP~~PFaiSvq~ 519 (534)
.|.=|++++-.+ +.....+..- .....+..|||..++++|...
T Consensus 358 ~D~~i~vwd~~~-~~~~~~~~~h---------~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 358 DDKTLRVWDYKN-KRCMKTLNAH---------EHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp TTTEEEEECCTT-SCCCEEEECC---------SSCEEEEEECSSSSCEEEEET
T ss_pred CCCeEEEEECCC-CceEEEEcCC---------CCcEEEEEEcCCCCEEEEEeC
Confidence 345577777666 5444444321 134778889999999988743
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=43.68 E-value=2.3e+02 Score=27.25 Aligned_cols=125 Identities=8% Similarity=0.103 Sum_probs=67.6
Q ss_pred eeeeCCCCCeEEEe-e-CCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEec
Q 009465 51 FRKFTDDGQYLISF-S-RNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSME 128 (534)
Q Consensus 51 lrKFTpDG~~LIaF-S-~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~ 128 (534)
--.|+|||++|++= + .....|.||....... +. ....+...+... ...|..
T Consensus 225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~------------~~------------~~~~~~~~~~v~---~~~~s~ 277 (402)
T 2aq5_A 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEE------------PL------------SLQELDTSSGVL---LPFFDP 277 (402)
T ss_dssp EEEECSTTEEEEEEECTTCCEEEEEEETTBCSS------------CS------------EEEECCCCSSCE---EEEEET
T ss_pred EEEEcCCCcEEEEeccCCCCceEEEEcCccccC------------Cc------------eEEeccCCCcee---EEEEcC
Confidence 34589999877763 2 4567788888762111 00 011111222221 345778
Q ss_pred CceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCe--EeeeeeeccceEEeeecceeeeecceeeeeeecc
Q 009465 129 GNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGV--VLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRY 206 (534)
Q Consensus 129 dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~--v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~ 206 (534)
||+++++++.. +=+++++|+.+|. +.--..++.+ ..-.++....|-..+++ ..
T Consensus 278 ~~~~l~~~g~~--------------------dg~i~i~d~~~~~~~~~~l~~~~~~----~~v~~~~~sp~~~~~~s-~~ 332 (402)
T 2aq5_A 278 DTNIVYLCGKG--------------------DSSIRYFEITSEAPFLHYLSMFSSK----ESQRGMGYMPKRGLEVN-KC 332 (402)
T ss_dssp TTTEEEEEETT--------------------CSCEEEEEECSSTTCEEEEEEECCS----SCCSEEEECCGGGSCGG-GT
T ss_pred CCCEEEEEEcC--------------------CCeEEEEEecCCCcceEeecccccC----CcccceEEeccccccee-cc
Confidence 99998775432 1247888888887 3222222211 11123333333333334 44
Q ss_pred cEEEEEEEccCCeEEEeeeeCC
Q 009465 207 QTIHILQVRDLGNLVDVRTIGS 228 (534)
Q Consensus 207 QtIhi~qI~~~G~fv~vrtIG~ 228 (534)
.+|.+|.+.. |....+..+.+
T Consensus 333 ~~~~~~~l~~-~~~~~i~~~~p 353 (402)
T 2aq5_A 333 EIARFYKLHE-RKCEPIAMTVP 353 (402)
T ss_dssp EEEEEEEEET-TEEEEEEEECC
T ss_pred eeEEEEEcCC-CcEEEEEEEcc
Confidence 5999999985 78777765554
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=43.42 E-value=1.8e+02 Score=26.06 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.9
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
=.|+|||++|++-+.|. .+.||+..
T Consensus 17 ~~~~~~~~~l~~~~~dg-~i~iw~~~ 41 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQ-HIKVFKLD 41 (351)
T ss_dssp EEECSSSSEEEEEETTS-EEEEEEEC
T ss_pred EEEcCCCCEEEEeeCCC-eEEEEECC
Confidence 36999999998888774 78999887
No 99
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=43.13 E-value=74 Score=33.49 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=22.3
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCe
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGV 172 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~ 172 (534)
.-|..||++++++++... .| -+++++|+.+|.
T Consensus 406 ~~~spdg~~l~~~~~~~~-------------~p----~~i~l~d~~~~~ 437 (706)
T 2z3z_A 406 TQLSPDGSAIIDIFQSPT-------------VP----RKVTVTNIGKGS 437 (706)
T ss_dssp EEECTTSSEEEEEEECSS-------------CS----CEEEEEESSSCE
T ss_pred EEECCCCCEEEEEecCCC-------------CC----cEEEEEECCCCe
Confidence 457789999988655521 11 257889998887
No 100
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=42.86 E-value=2.3e+02 Score=27.01 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=20.0
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
--.|+|||++|++=+.|. .|.||...
T Consensus 252 ~~~~s~~~~~l~~~~~dg-~i~i~d~~ 277 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSG-VITVHNVF 277 (420)
T ss_dssp TTCSSCTTEEEEEEETTS-CEEEEETT
T ss_pred ceEEcCCCCEEEEEcCCC-eEEEEECC
Confidence 346899999998877665 48888876
No 101
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=42.68 E-value=1.9e+02 Score=27.56 Aligned_cols=119 Identities=8% Similarity=0.002 Sum_probs=0.0
Q ss_pred eeCCCCCeEEEeeCC---------CceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeE
Q 009465 53 KFTDDGQYLISFSRN---------HQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDF 123 (534)
Q Consensus 53 KFTpDG~~LIaFS~d---------q~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~ref 123 (534)
.|+|||+.+++=..+ ...|.++.... .+...++.+..+. .=..
T Consensus 178 ~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-------------------------~~v~~~~~~~~g~---~p~~ 229 (328)
T 3dsm_A 178 VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-------------------------FTVEKQFKFKLGD---WPSE 229 (328)
T ss_dssp EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-------------------------TEEEEEEECCTTC---CCEE
T ss_pred EEcCCCCEEEEECCCccCCccccCCceEEEEECCC-------------------------CeEEEEEecCCCC---Ccee
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeee--ecceeee
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFL--YDDLLAI 201 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L--~~dlLAI 201 (534)
.-+..||+++.++..+ ++++|+++|.+.....+... ...-.|+.+ -+..|-|
T Consensus 230 la~~~d~~~lyv~~~~-----------------------v~~~d~~t~~~~~~~~~~~~---~~~p~gi~vdp~~g~lyv 283 (328)
T 3dsm_A 230 VQLNGTRDTLYWINND-----------------------IWRMPVEADRVPVRPFLEFR---DTKYYGLTVNPNNGEVYV 283 (328)
T ss_dssp EEECTTSCEEEEESSS-----------------------EEEEETTCSSCCSSCSBCCC---SSCEEEEEECTTTCCEEE
T ss_pred EEEecCCCEEEEEccE-----------------------EEEEECCCCceeeeeeecCC---CCceEEEEEcCCCCeEEE
Q ss_pred ee----ecccEEEEEEEccCCeEEEeeeeC
Q 009465 202 VS----LRYQTIHILQVRDLGNLVDVRTIG 227 (534)
Q Consensus 202 LS----~q~QtIhi~qI~~~G~fv~vrtIG 227 (534)
-. ...-+|++|... |+++..=.+|
T Consensus 284 a~~~~y~~~~~V~v~d~~--g~~~~~i~~G 311 (328)
T 3dsm_A 284 ADAIDYQQQGIVYRYSPQ--GKLIDEFYVG 311 (328)
T ss_dssp EECTTSSSEEEEEEECTT--CCEEEEEEEE
T ss_pred EcccccccCCEEEEECCC--CCEEEEEEec
No 102
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=42.67 E-value=81 Score=33.76 Aligned_cols=106 Identities=14% Similarity=-0.043 Sum_probs=59.8
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCC--------CCeee---ee
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLAS--------CNELI---CK 121 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~--------~~e~L---~r 121 (534)
.+|||||+|-+=....-+|.||+-..+. .. ++.-++.+-. .|..+ =|
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~-~~---------------------~lv~~I~tGG~~~~~~~~~G~~~~ggPr 384 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPF-KP---------------------VLTGKVKLGGIFHRADHPAGHKLTGAPQ 384 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTT-SC---------------------EEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCC-Cc---------------------EEEEEEEeCCeeccccccccccCCCCCC
Confidence 3999999999999999999999875211 00 0111111100 11111 23
Q ss_pred eEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEE--EccCCeEeeeeeeccceE-Eeeec
Q 009465 122 DFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLL--RLEDGVVLDEKVFHNDFI-NLAHN 189 (534)
Q Consensus 122 efsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlV--dL~~G~v~D~~~f~~D~I-~LsHN 189 (534)
+|. ++.||++++||.+- +.. .... =+|.=.+.++..+ |-++| +.....|..|+- .++|.
T Consensus 385 ~~~-lSpDGk~LyVaNsl-~~~--wd~Q----fyp~~~~~~~~~~~vd~~~G-L~~~~~f~vdf~~~~~h~ 446 (462)
T 2ece_A 385 MLE-ISRDGRRVYVTNSL-YST--WDNQ----FYPEGLKGWMVKLNANPSGG-LEIDKEFFVDFGEARSHQ 446 (462)
T ss_dssp CEE-ECTTSSEEEEECCC-CHH--HHHH----HSTTCCCCEEEEEEECTTSC-EEEEEEEEEECTTSEEEE
T ss_pred EEE-EcCCCCEEEEEcCC-ccc--cccc----ccCCCCceEEEEEEecCCCC-ceeCCCEEeecccCccee
Confidence 444 56799999997631 000 0000 0222234555544 77899 888888888874 45553
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=42.58 E-value=77 Score=30.82 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=19.5
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|+|||++|++=|.| ..|.||..+
T Consensus 221 ~~s~~~~~l~s~~~d-g~i~iwd~~ 244 (437)
T 3gre_A 221 CIDEECCVLILGTTR-GIIDIWDIR 244 (437)
T ss_dssp EECTTSCEEEEEETT-SCEEEEETT
T ss_pred EECCCCCEEEEEcCC-CeEEEEEcC
Confidence 589999999988887 468888776
No 104
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=42.41 E-value=66 Score=29.71 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=20.3
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecC
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~g 78 (534)
--.|+|||+++++-+.....+.||+...
T Consensus 264 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 264 QVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 3469999995555555556899999874
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=41.94 E-value=1.6e+02 Score=27.65 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=20.4
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
.|+|||++|++-|.| ..|.||...
T Consensus 153 ~~~~~~~~l~~~~~d-~~i~iwd~~ 176 (377)
T 3dwl_C 153 DWHPNNVLLAAGCAD-RKAYVLSAY 176 (377)
T ss_dssp EECTTSSEEEEEESS-SCEEEEEEC
T ss_pred EEcCCCCEEEEEeCC-CEEEEEEEE
Confidence 599999999988887 568899885
No 106
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=41.43 E-value=97 Score=35.01 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=23.8
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeE
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV 173 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v 173 (534)
.-|..||+++++++....-+ ...-.+-+++++|+++|.+
T Consensus 426 ~~~SpDG~~la~~~~~~~~~-----------~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGE-----------TDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp EEECTTSCEEEEEEEECSST-----------TCSCCEEEEEEEETTTTEE
T ss_pred eEECCCCCeEEEEecCcccc-----------ccCCCCCeEEEEECCCCcE
Confidence 45789999998865541000 0012346788888888863
No 107
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=41.33 E-value=1.4e+02 Score=29.40 Aligned_cols=25 Identities=16% Similarity=0.075 Sum_probs=20.6
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|+|||++|++=|.|. .|.||.+.
T Consensus 114 ~~~~p~~~~l~s~s~Dg-~i~vwd~~ 138 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDA-TIKVWDYE 138 (410)
T ss_dssp EEECSSSSEEEEEESSS-CEEEEETT
T ss_pred EEEcCCCCEEEEEeCCC-eEEEEECC
Confidence 36999999999888876 68888875
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=40.49 E-value=1.4e+02 Score=32.38 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=20.5
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
=.|+|||++|++-+.| ..|.||...
T Consensus 15 l~~s~dg~~latg~~d-g~I~vwd~~ 39 (753)
T 3jro_A 15 AVLDYYGKRLATCSSD-KTIKIFEVE 39 (753)
T ss_dssp ECCCSSSCCEEEEETT-TEEEEEEEE
T ss_pred EEECCCCCeEEEEECC-CcEEEEecC
Confidence 3599999998888776 578999876
No 109
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=39.63 E-value=2.3e+02 Score=26.18 Aligned_cols=27 Identities=4% Similarity=-0.081 Sum_probs=20.9
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecC
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~g 78 (534)
--.|+|||++|++-+.| ..+.+|.+..
T Consensus 101 ~~~~~~~~~~l~~~~~d-~~v~i~d~~~ 127 (372)
T 1k8k_C 101 CVRWAPNEKKFAVGSGS-RVISICYFEQ 127 (372)
T ss_dssp EEEECTTSSEEEEEETT-SSEEEEEEET
T ss_pred EEEECCCCCEEEEEeCC-CEEEEEEecC
Confidence 34799999998888766 5688888773
No 110
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=38.85 E-value=76 Score=30.90 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=47.8
Q ss_pred EEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCeEEEeeeeC
Q 009465 162 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 227 (534)
Q Consensus 162 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG 227 (534)
++..||+++|++..+..+.... .+ .|+.+.++.|-+|.-+..+|++|... +++.+..=+.|
T Consensus 44 ~v~~vD~~tgkv~~~~~l~~~~--fg--eGi~~~~~~ly~ltw~~~~v~v~D~~-tl~~~~ti~~~ 104 (243)
T 3mbr_X 44 SVRKVDLETGRILQRAEVPPPY--FG--AGIVAWRDRLIQLTWRNHEGFVYDLA-TLTPRARFRYP 104 (243)
T ss_dssp EEEEEETTTCCEEEEEECCTTC--CE--EEEEEETTEEEEEESSSSEEEEEETT-TTEEEEEEECS
T ss_pred eEEEEECCCCCEEEEEeCCCCc--ce--eEEEEeCCEEEEEEeeCCEEEEEECC-cCcEEEEEeCC
Confidence 5889999999999988776542 22 48999999999999999999999865 46655544444
No 111
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=38.01 E-value=3.3e+02 Score=28.75 Aligned_cols=141 Identities=14% Similarity=0.053 Sum_probs=0.0
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeee----------
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKD---------- 122 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~re---------- 122 (534)
.|+|||++|++=|.| ..|.||...+............+......-.|..-=.....+.-..++..-.=|
T Consensus 479 ~~s~~~~~l~s~s~D-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 557 (694)
T 3dm0_A 479 AFSLDNRQIVSASRD-RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557 (694)
T ss_dssp EECTTSSCEEEEETT-SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEeCCCCEEEEEeCC-CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE
Q ss_pred --------EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeee
Q 009465 123 --------FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFL 194 (534)
Q Consensus 123 --------fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L 194 (534)
+.-|..||++++.|+.- =++.|+|+.+|...-+..-....-.++-+..
T Consensus 558 ~~h~~~v~~v~~spdg~~l~sg~~D---------------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~--- 613 (694)
T 3dm0_A 558 AGHTGYVSTVAVSPDGSLCASGGKD---------------------GVVLLWDLAEGKKLYSLEANSVIHALCFSPN--- 613 (694)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETT---------------------SBCEEEETTTTEEEECCBCSSCEEEEEECSS---
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCC---------------------CeEEEEECCCCceEEEecCCCcEEEEEEcCC---
Q ss_pred ecceeeeeeecccEEEEEEEccCCeEEE
Q 009465 195 YDDLLAIVSLRYQTIHILQVRDLGNLVD 222 (534)
Q Consensus 195 ~~dlLAILS~q~QtIhi~qI~~~G~fv~ 222 (534)
+.+|+.-+ ...|+|+.+. +|+.+.
T Consensus 614 -~~~l~~~~--~~~i~iwd~~-~~~~~~ 637 (694)
T 3dm0_A 614 -RYWLCAAT--EHGIKIWDLE-SKSIVE 637 (694)
T ss_dssp -SSEEEEEE--TTEEEEEETT-TTEEEE
T ss_pred -CcEEEEEc--CCCEEEEECC-CCCChh
No 112
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.88 E-value=2.8e+02 Score=26.69 Aligned_cols=122 Identities=10% Similarity=0.029 Sum_probs=67.1
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecCce
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr 131 (534)
=.|+|||++|++-+.|. .|.||...... . .+. +......+ .+.-|..+|.
T Consensus 223 ~~~~~~~~~l~s~~~d~-~v~iwd~~~~~-------~------------------~~~--~~~~~~~v--~~~~~~p~~~ 272 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDN-VVQIWDARSSI-------P------------------KFT--KTNHNAAV--KAVAWCPWQS 272 (401)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEETTCSS-------E------------------EEE--ECCCSSCC--CEEEECTTST
T ss_pred EEEcCCCCEEEEEeCCC-eEEEccCCCCC-------c------------------cEE--ecCCcceE--EEEEECCCCC
Confidence 46899999998887775 67888766200 0 000 00111111 1334556677
Q ss_pred EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeee-ecccEEE
Q 009465 132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVS-LRYQTIH 210 (534)
Q Consensus 132 yvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS-~q~QtIh 210 (534)
++++.+.. -.+=+++++|+.+|...-..........++-+ --+..|++.+ -..-+|+
T Consensus 273 ~ll~~~~g------------------s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 273 NLLATGGG------------------TMDKQIHFWNAATGARVNTVDAGSQVTSLIWS----PHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp TEEEEECC------------------TTTCEEEEEETTTCCEEEEEECSSCEEEEEEC----SSSSEEEEEECTTTCEEE
T ss_pred CEEEEecC------------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEEEC----CCCCeEEEEeecCCCcEE
Confidence 76664321 02346899999999876655433332222211 1234444442 2567899
Q ss_pred EEEEccCCeEEEeeee
Q 009465 211 ILQVRDLGNLVDVRTI 226 (534)
Q Consensus 211 i~qI~~~G~fv~vrtI 226 (534)
||.+.. |....+..+
T Consensus 331 v~~~~~-~~~~~~~~~ 345 (401)
T 4aez_A 331 IWSYSS-SGLTKQVDI 345 (401)
T ss_dssp EEEEET-TEEEEEEEE
T ss_pred EEecCC-ccceeEEEe
Confidence 999874 666666544
No 113
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=37.77 E-value=95 Score=32.10 Aligned_cols=39 Identities=10% Similarity=-0.055 Sum_probs=27.6
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeec
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH 180 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~ 180 (534)
-..|+.||+++.|+.... +=++.+||++++++..+....
T Consensus 141 ~~a~spDGk~lyVan~~~-------------------~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSP-------------------APAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp GEEECTTSSEEEEEECSS-------------------SCEEEEEETTTTEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEcCC-------------------CCeEEEEECCCCcEEEEEECC
Confidence 467889999999964331 125777888888888776553
No 114
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=37.60 E-value=21 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=15.1
Q ss_pred eeCCCCCeEEEeeCCCc
Q 009465 53 KFTDDGQYLISFSRNHQ 69 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~ 69 (534)
+|||||++|++=|.|..
T Consensus 49 ~fSpDG~~las~s~d~~ 65 (357)
T 4g56_B 49 RYRRDGALLLAASSLSS 65 (357)
T ss_dssp EECSSSCEEEEEECSSS
T ss_pred EECCCCCEEEEEcCCCC
Confidence 79999999999998754
No 115
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=36.39 E-value=2.6e+02 Score=25.78 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=23.4
Q ss_pred cceeeeeeecccEEEEEEEccCCeEEEeeeeCC
Q 009465 196 DDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGS 228 (534)
Q Consensus 196 ~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG~ 228 (534)
+..||+-+- -.+|+||.+..+|++..+..+..
T Consensus 268 g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 268 GNVLALSGG-DNKVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp SCCEEEEES-SSSEEEEEEEETTEEEEEEEEC-
T ss_pred CCEEEEecC-CCcEEEEeCCCCCccccccceec
Confidence 345666665 57899999987788888777654
No 116
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=35.04 E-value=3.6e+02 Score=30.21 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=19.8
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeecC
Q 009465 50 SFRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq~~L~vYry~g 78 (534)
.+. ||||| +||...+...+.||.-.+
T Consensus 580 sva-fSpdG--~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 580 AIN-NSNIG--FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp EEE-ECBTS--EEEEEETTSEEEEEETTT
T ss_pred EEE-ecCCc--EEEEEeCCCcEEEEECCC
Confidence 355 99999 666677778899998653
No 117
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=33.63 E-value=2.7e+02 Score=25.08 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=22.0
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 49 ~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
...-.|+++|++|++-+.|. .+.||...
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~-~i~iwd~~ 180 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDN-LVNVWPSA 180 (318)
T ss_dssp EEEEEECTTSSEEEEEETTS-CEEEEESS
T ss_pred eEEEEEcCCCCEEEEEecCc-ceeEEECC
Confidence 45667999999999888775 57888765
No 118
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=32.67 E-value=3e+02 Score=25.44 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=57.5
Q ss_pred eeeeCC--CCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEec
Q 009465 51 FRKFTD--DGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSME 128 (534)
Q Consensus 51 lrKFTp--DG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~ 128 (534)
.-.|+| ||++|++-|.|. .|.||.... +.+ ..++. .+.+. + -+..|.+
T Consensus 189 ~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~-------~~~------------------~~~~~-~h~~~-v--~~~~~~p 238 (304)
T 2ynn_A 189 YVDYYPLPDKPYMITASDDL-TIKIWDYQT-------KSC------------------VATLE-GHMSN-V--SFAVFHP 238 (304)
T ss_dssp EEEECCSTTCCEEEEEETTS-EEEEEETTT-------TEE------------------EEEEE-CCSSC-E--EEEEECS
T ss_pred EEEEEEcCCCCEEEEEcCCC-eEEEEeCCC-------Ccc------------------ceeeC-CCCCC-E--EEEEECC
Confidence 335554 888988888775 688887751 111 00110 11111 1 1355778
Q ss_pred CceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEE-ee-ecce-----eeeecceeee
Q 009465 129 GNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFIN-LA-HNMG-----VFLYDDLLAI 201 (534)
Q Consensus 129 dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~-Ls-HN~G-----v~L~~dlLAI 201 (534)
+|++++-|+. |=++.|+|+.+|.+..+.....+.++ ++ |..| +.=++|-+.|
T Consensus 239 ~~~~l~s~s~---------------------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSE---------------------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEET---------------------TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcC---------------------CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 8886554322 22588999999998877766666553 33 3322 2224555555
Q ss_pred eeec
Q 009465 202 VSLR 205 (534)
Q Consensus 202 LS~q 205 (534)
+++.
T Consensus 298 ~~~~ 301 (304)
T 2ynn_A 298 LSLG 301 (304)
T ss_dssp EECC
T ss_pred EEec
Confidence 5554
No 119
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=32.05 E-value=2.8e+02 Score=28.96 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=21.0
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
--+|||||++|++=|.|. .+.|+...
T Consensus 64 ~~~~spdg~~lasg~~d~-~v~lWd~~ 89 (611)
T 1nr0_A 64 VAKTSPSGYYCASGDVHG-NVRIWDTT 89 (611)
T ss_dssp EEEECTTSSEEEEEETTS-EEEEEESS
T ss_pred EEEECCCCcEEEEEeCCC-CEEEeECC
Confidence 358999999999888875 58888864
No 120
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=31.85 E-value=2.9e+02 Score=25.02 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=49.6
Q ss_pred EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeee--cceeee
Q 009465 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAI 201 (534)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAI 201 (534)
.-|..||+++++++.. +-+++++|+.+|.+..+..+.....+-.+-.++.+- ++.|++
T Consensus 39 ~~~s~dg~~l~v~~~~--------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 39 PMVAPGGRIAYATVNK--------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp EEECTTSSEEEEEETT--------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred eEEcCCCCEEEEEeCC--------------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence 4577899988875422 125889999999987766553211111122344443 445666
Q ss_pred eee-----------cccEEEEEEEccCCeEEEeeeeCC
Q 009465 202 VSL-----------RYQTIHILQVRDLGNLVDVRTIGS 228 (534)
Q Consensus 202 LS~-----------q~QtIhi~qI~~~G~fv~vrtIG~ 228 (534)
.+- ...+|+++.+. +|+.+..-..|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~ 135 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFEAPR 135 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEECCS
T ss_pred EecccccccccccccCceEEEEECC-CCcEEEEEeCCC
Confidence 642 24788888875 577665544443
No 121
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=31.15 E-value=3.8e+02 Score=26.08 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=20.3
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|+|||++|++-|.|. .|.||...
T Consensus 316 ~~~~~~~~~l~sg~~dg-~i~vwd~~ 340 (464)
T 3v7d_B 316 TIYDHERKRCISASMDT-TIRIWDLE 340 (464)
T ss_dssp EEEETTTTEEEEEETTS-CEEEEETT
T ss_pred EEEcCCCCEEEEEeCCC-cEEEEECC
Confidence 46899999999888875 58888875
No 122
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=30.13 E-value=36 Score=31.38 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.5
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
=.|+|||++|++=|.|. .|.||+-.
T Consensus 312 l~~s~dg~~l~sgs~Dg-~v~iW~~~ 336 (340)
T 4aow_A 312 LAWSADGQTLFAGYTDN-LVRVWQVT 336 (340)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEEEE
T ss_pred EEECCCCCEEEEEeCCC-EEEEEeCC
Confidence 36999999999988885 58888754
No 123
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=30.03 E-value=35 Score=32.34 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=20.0
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|||||++|++=|.|. .|.||+-.
T Consensus 292 ~~~spdg~~l~sg~~Dg-~i~vWd~~ 316 (319)
T 3frx_A 292 LAWSADGQTLFAGYTDN-VIRVWQVM 316 (319)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEEEE
T ss_pred EEECCCCCEEEEeecCc-eEEEEEEe
Confidence 47999999999988886 47777653
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=29.79 E-value=34 Score=35.41 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=19.9
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEee
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRP 76 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry 76 (534)
=.|||||++|++=|.| ..+.||++
T Consensus 332 vafSPDG~~LaSGS~D-~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKD-GNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTT-SCEEEEEE
T ss_pred EEECCCCCEEEEEECC-CcEEEecC
Confidence 3799999999988877 57888876
No 125
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=29.45 E-value=1.1e+02 Score=30.21 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=47.3
Q ss_pred EEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEEEEccCCeEEEeeeeC
Q 009465 162 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 227 (534)
Q Consensus 162 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG 227 (534)
++..||+++|++..+..+.... .+ .|+.+.+|.|-++.-+..++.+|... +++.+..=..|
T Consensus 66 ~v~~vD~~Tgkv~~~~~l~~~~--Fg--eGit~~g~~ly~ltw~~~~v~v~D~~-t~~~~~ti~~~ 126 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIELGKRY--FG--EGISDWKDKIVGLTWKNGLGFVWNIR-NLRQVRSFNYD 126 (262)
T ss_dssp EEEEECTTTCCEEEEEECCTTC--CE--EEEEEETTEEEEEESSSSEEEEEETT-TCCEEEEEECS
T ss_pred eEEEEECCCCcEEEEEecCCcc--ce--eEEEEeCCEEEEEEeeCCEEEEEECc-cCcEEEEEECC
Confidence 5889999999999988775431 22 48999999999999999999999875 46665544444
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=29.09 E-value=42 Score=31.95 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.8
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 52 rKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
-.|+|||++|++-|.+...+.||++.
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEc
Confidence 46999999999999856679999996
No 127
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=28.83 E-value=4.1e+02 Score=25.78 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=21.7
Q ss_pred CceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 009465 48 DHSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (534)
Q Consensus 48 ~~~lrKFTpDG~~LIaFS~dq~~L~vYry~ 77 (534)
....-+++|+|++|++-+.|. .+.|+...
T Consensus 232 ~~~~~~~~~~g~~l~s~~~D~-~v~i~~~~ 260 (420)
T 4gga_A 232 EVCGLRWAPDGRHLASGGNDN-LVNVWPSA 260 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTS-CEEEEESS
T ss_pred ceeeeeecCCCCeeeeeeccc-cceEEeec
Confidence 345668999999999988875 45666654
No 128
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=27.78 E-value=3.7e+02 Score=24.94 Aligned_cols=154 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred eCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhh----hh----------------------hee
Q 009465 54 FTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFES----FF----------------------TQL 107 (534)
Q Consensus 54 FTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~----fF----------------------~~~ 107 (534)
++|||+ |++.+.....|.+|...|--..............+.+-.++. +| ...
T Consensus 93 ~d~dG~-l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 93 VDAQQR-LVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp ECTTSC-EEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred ECCCCC-EEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeE
Q ss_pred eEEEcCCCC-eeeeeeE-----EEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeee--
Q 009465 108 YSVTLASCN-ELICKDF-----FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF-- 179 (534)
Q Consensus 108 ~~~~l~~~~-e~L~ref-----sLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f-- 179 (534)
|.+....+. ..+. ++ ..|..||+.+.++... ...-.+-.++.+|+..|.+...+.|
T Consensus 172 ~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~---------------~~~~~~~~i~~~~~~~~~l~~~~~~~~ 235 (305)
T 3dr2_A 172 YRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTP---------------EQGHGSVEITAFAWRDGALHDRRHFAS 235 (305)
T ss_dssp EEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECC---------------C---CCCEEEEEEEETTEEEEEEEEEC
T ss_pred EEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecC---------------CcCCCCCEEEEEEecCCCccCCeEEEE
Q ss_pred ------------ccceEEeeecceeeee---cceeeeeeecccEEEEEEEccCCeEEEeee
Q 009465 180 ------------HNDFINLAHNMGVFLY---DDLLAIVSLRYQTIHILQVRDLGNLVDVRT 225 (534)
Q Consensus 180 ------------~~D~I~LsHN~Gv~L~---~dlLAILS~q~QtIhi~qI~~~G~fv~vrt 225 (534)
+...|+++.+.||+++ +.++..+.+.. .+.=....++|+-+-+-+
T Consensus 236 ~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 236 VPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITG 295 (305)
T ss_dssp CSSSCCCSEEECTTSCEEECCSSEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEE
T ss_pred CCCCCCCeEEECCCCCEEEecCCcEEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEc
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=27.23 E-value=36 Score=33.51 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=20.4
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCC
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMWLS 80 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g~~ 80 (534)
.|+|||++|++=|.| .+.++|-.|.+
T Consensus 366 afspdG~~LA~as~~--Gv~lvrL~gf~ 391 (393)
T 4gq1_A 366 CWHQDGSHLAIATEG--SVLLTRLMGFT 391 (393)
T ss_dssp EECTTSSEEEEEESS--EEEEEEEGGGC
T ss_pred EEcCCCCEEEEEeCC--CeEEEEEeCcc
Confidence 699999999877654 57788888654
No 130
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=25.99 E-value=1.6e+02 Score=32.29 Aligned_cols=119 Identities=14% Similarity=0.003 Sum_probs=70.8
Q ss_pred chhhhhhheeeEEEcCCCCeeeeeeEEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeee
Q 009465 98 KRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK 177 (534)
Q Consensus 98 ~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~ 177 (534)
..++..-+..|.+.+..+-...+-||-. +++|..+|++..... ...++. ....+++ .|.-|| .+|.|+.+-
T Consensus 229 ~elD~~Gkvv~~~~lp~g~~~~HHD~~~-l~nGn~Lv~v~~~d~----~~~dG~--~~~~vdD-~I~EVD-~tGeVv~eW 299 (571)
T 3elq_A 229 YEFDMMGQVLEDHKLPRGFADATHESIE-TPNGTVLLRVGKSNY----RRDDGV--HVTTIRD-HILEVD-KSGRVVDVW 299 (571)
T ss_dssp EEECTTCCEEEEEECCTTEECBCSCEEE-CTTSCEEEEEEETTE----ECTTSC--EECCCSC-EEEEEC-TTSCEEEEE
T ss_pred EEECCCCcEEEEEECCCCccccccceEE-cCCCcEEEEEecccc----cCCCCc--ccceecc-EEEEEC-CCCCEEEEE
Confidence 4556666667777776554556777654 899999988643211 111221 1123566 488999 999988765
Q ss_pred eeccc----------------------------------------------eEEeeecceeeeec-ceeeeeeecccEEE
Q 009465 178 VFHND----------------------------------------------FINLAHNMGVFLYD-DLLAIVSLRYQTIH 210 (534)
Q Consensus 178 ~f~~D----------------------------------------------~I~LsHN~Gv~L~~-dlLAILS~q~QtIh 210 (534)
.+..- --.+.|...|..-. |=-.|+|.|||+
T Consensus 300 ~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~liSsR~~~-- 377 (571)
T 3elq_A 300 DLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIILSSRHQG-- 377 (571)
T ss_dssp EHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEEEETTTE--
T ss_pred EhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEEECCccE--
Confidence 53110 01334555665432 335789999995
Q ss_pred EEEEccCCeEEEeeeeCCc
Q 009465 211 ILQVRDLGNLVDVRTIGSF 229 (534)
Q Consensus 211 i~qI~~~G~fv~vrtIG~f 229 (534)
|+.|..+|+.+- .+|..
T Consensus 378 I~~Id~tG~V~W--~LGg~ 394 (571)
T 3elq_A 378 VVKIGRDKQVKW--ILAPS 394 (571)
T ss_dssp EEEEETTSCEEE--EESCS
T ss_pred EEEEcCCCcEEE--EECCC
Confidence 566765786433 45654
No 131
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=25.40 E-value=4.2e+02 Score=24.78 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=43.4
Q ss_pred EEEEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeec--cceEEe---eeccee---ee
Q 009465 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH--NDFINL---AHNMGV---FL 194 (534)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~--~D~I~L---sHN~Gv---~L 194 (534)
+.-|..||+++++|+... ..-++.++|+.+|...-...-. .+...+ +|+..| ..
T Consensus 238 ~i~~~~~~~~l~~~~~d~------------------~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSN------------------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp EEEECSSTTEEEEEEEET------------------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred eEEECCCCCEEEEEecCC------------------CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE
Confidence 344567888887764320 0146899999999766544320 000000 022222 22
Q ss_pred e--cceeeeeeecccEEEEEEEccCCeEEE
Q 009465 195 Y--DDLLAIVSLRYQTIHILQVRDLGNLVD 222 (534)
Q Consensus 195 ~--~dlLAILS~q~QtIhi~qI~~~G~fv~ 222 (534)
. +.+||.-+ .--+|+|+.+.. |+.+.
T Consensus 300 ~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~ 327 (397)
T 1sq9_A 300 NDSGETLCSAG-WDGKLRFWDVKT-KERIT 327 (397)
T ss_dssp CSSSSEEEEEE-TTSEEEEEETTT-TEEEE
T ss_pred CCCCCEEEEEe-CCCeEEEEEcCC-CceeE
Confidence 2 45666666 456899999874 65443
No 132
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.13 E-value=4.6e+02 Score=25.15 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=67.9
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEec
Q 009465 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSME 128 (534)
Q Consensus 49 ~~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~ 128 (534)
.++-.++++|..+++.+.|. .|.||.... +.. .......+.+... +.-|..
T Consensus 94 ~~~~~~~~s~~~l~~~~~d~-~v~lw~~~~-------~~~------------------~~~~~~~~~~~v~---~v~~s~ 144 (401)
T 4aez_A 94 YYLNLLDWSNLNVVAVALER-NVYVWNADS-------GSV------------------SALAETDESTYVA---SVKWSH 144 (401)
T ss_dssp TTCBCEEECTTSEEEEEETT-EEEEEETTT-------CCE------------------EEEEECCTTCCEE---EEEECT
T ss_pred ceEEEEeecCCCEEEEECCC-eEEEeeCCC-------CcE------------------eEeeecCCCCCEE---EEEECC
Confidence 44666788889999988765 588887652 100 0111111222221 344667
Q ss_pred CceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccE
Q 009465 129 GNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQT 208 (534)
Q Consensus 129 dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~Qt 208 (534)
||+++++|+.. -++.++|+++|...-...-+.+.|. .+...+++|+.-|-. -+
T Consensus 145 ~~~~l~~~~~d---------------------g~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~l~~~~~d-g~ 197 (401)
T 4aez_A 145 DGSFLSVGLGN---------------------GLVDIYDVESQTKLRTMAGHQARVG-----CLSWNRHVLSSGSRS-GA 197 (401)
T ss_dssp TSSEEEEEETT---------------------SCEEEEETTTCCEEEEECCCSSCEE-----EEEEETTEEEEEETT-SE
T ss_pred CCCEEEEECCC---------------------CeEEEEECcCCeEEEEecCCCCceE-----EEEECCCEEEEEcCC-CC
Confidence 89988876543 1478899999987665543333332 233456666666544 68
Q ss_pred EEEEEEccCCe
Q 009465 209 IHILQVRDLGN 219 (534)
Q Consensus 209 Ihi~qI~~~G~ 219 (534)
|+++.+...+.
T Consensus 198 i~i~d~~~~~~ 208 (401)
T 4aez_A 198 IHHHDVRIANH 208 (401)
T ss_dssp EEEEETTSSSC
T ss_pred EEEEecccCcc
Confidence 88888874343
No 133
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=25.13 E-value=44 Score=31.68 Aligned_cols=28 Identities=11% Similarity=-0.224 Sum_probs=21.7
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeecC
Q 009465 50 SFRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq~~L~vYry~g 78 (534)
.-=.|+|||++|++-+.| ..|.||+..|
T Consensus 398 ~~~~~s~~~~~l~~~~~d-g~i~iw~~~g 425 (425)
T 1r5m_A 398 FDLSWNCAGNKISVAYSL-QEGSVVAIPG 425 (425)
T ss_dssp EEEEECTTSSEEEEEESS-SCCEEEECCC
T ss_pred EEEEccCCCceEEEEecC-ceEEEEeecC
Confidence 344699999999887766 4688998765
No 134
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=24.00 E-value=5e+02 Score=25.16 Aligned_cols=110 Identities=20% Similarity=0.258 Sum_probs=65.7
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCcccchhhhhhheeeEEEcCCCCeeeeeeEEEEecC
Q 009465 50 SFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEG 129 (534)
Q Consensus 50 ~lrKFTpDG~~LIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~d 129 (534)
.+..++|||++|++-+.|. .|.||.... +.+ ..+.. .+.+.. -+..|..+
T Consensus 272 ~v~~~~~~~~~l~~~~~d~-~i~vwd~~~-------~~~------------------~~~~~-~~~~~v---~~~~~~~~ 321 (464)
T 3v7d_B 272 SVRTVSGHGNIVVSGSYDN-TLIVWDVAQ-------MKC------------------LYILS-GHTDRI---YSTIYDHE 321 (464)
T ss_dssp CEEEEEEETTEEEEEETTS-CEEEEETTT-------TEE------------------EEEEC-CCSSCE---EEEEEETT
T ss_pred eEEEEcCCCCEEEEEeCCC-eEEEEECCC-------CcE------------------EEEec-CCCCCE---EEEEEcCC
Confidence 3556789999998888776 477877641 100 00110 011111 13446778
Q ss_pred ceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEE
Q 009465 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTI 209 (534)
Q Consensus 130 gryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtI 209 (534)
|++++.|+.. =+++++|+.+|...-+..-+.+.|. .+.+-++.|+.-|-- .+|
T Consensus 322 ~~~l~sg~~d---------------------g~i~vwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~l~s~s~d-g~v 374 (464)
T 3v7d_B 322 RKRCISASMD---------------------TTIRIWDLENGELMYTLQGHTALVG-----LLRLSDKFLVSAAAD-GSI 374 (464)
T ss_dssp TTEEEEEETT---------------------SCEEEEETTTTEEEEEECCCSSCEE-----EEEECSSEEEEEETT-SEE
T ss_pred CCEEEEEeCC---------------------CcEEEEECCCCcEEEEEeCCCCcEE-----EEEEcCCEEEEEeCC-CcE
Confidence 8888765433 2488999999987766544444332 233446677666654 679
Q ss_pred EEEEEcc
Q 009465 210 HILQVRD 216 (534)
Q Consensus 210 hi~qI~~ 216 (534)
+|+.+..
T Consensus 375 ~vwd~~~ 381 (464)
T 3v7d_B 375 RGWDAND 381 (464)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9998874
No 135
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=23.54 E-value=2.3e+02 Score=30.57 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=26.2
Q ss_pred EEecCceEEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEee
Q 009465 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLD 175 (534)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D 175 (534)
-+..||+++.+++... + -|.++++++|+++|....
T Consensus 169 ~~SPDG~~la~~~~~~--G--------------~e~~~i~v~dl~tg~~~~ 203 (741)
T 1yr2_A 169 AASDDGRLLAYSVQDG--G--------------SDWRTVKFVGVADGKPLA 203 (741)
T ss_dssp EECTTSSEEEEEEEET--T--------------CSEEEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEEEcCC--C--------------CceEEEEEEECCCCCCCC
Confidence 4568999999876541 1 146899999999998654
No 136
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=22.75 E-value=67 Score=29.66 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=22.0
Q ss_pred eeeeCCCCCeEEEeeCC---CceEEEEeec
Q 009465 51 FRKFTDDGQYLISFSRN---HQDLIVYRPM 77 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~d---q~~L~vYry~ 77 (534)
==+|+|||.+|++.+.. ...|.||...
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~ 52 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQ 52 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEEC
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCC
Confidence 34699999999988876 7889999887
No 137
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=21.66 E-value=59 Score=32.89 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=20.6
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecC
Q 009465 53 KFTDDGQYLISFSRNHQDLIVYRPMW 78 (534)
Q Consensus 53 KFTpDG~~LIaFS~dq~~L~vYry~g 78 (534)
.|||||++|++-|.| ..|.||...|
T Consensus 64 ~fspdg~~las~~~d-~~i~vWd~~~ 88 (577)
T 2ymu_A 64 AFSPDGQTIASASDD-KTVKLWNRNG 88 (577)
T ss_dssp EECTTSSEEEEEETT-SCEEEEETTS
T ss_pred EECCCCCEEEEEeCC-CEEEEEECCC
Confidence 699999999998877 4688888654
No 138
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=21.15 E-value=1.1e+02 Score=27.31 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=42.1
Q ss_pred CcceEEEEEEEccCCeEeeeeeeccceEEeeecc---eeeeecceeeeeee----------cccEEEEEEE-ccCCeEEE
Q 009465 157 FIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNM---GVFLYDDLLAIVSL----------RYQTIHILQV-RDLGNLVD 222 (534)
Q Consensus 157 ~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~---Gv~L~~dlLAILS~----------q~QtIhi~qI-~~~G~fv~ 222 (534)
.++.-|||.|+..||..||- .+..|- ++|+- |-...|.++-|.=- -..++++||| -+||.-+.
T Consensus 29 ~~~~~~~y~V~F~DgS~s~d-l~PedI--vs~dc~~~GpP~~G~~V~V~W~DG~~y~a~f~g~~~~~~YtV~FeDgs~~~ 105 (123)
T 2xdp_A 29 AVTSQTFYEVMFDDGSFSRD-TFPEDI--VSRDCLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIA 105 (123)
T ss_dssp EEEEEEEEEEEETTSCEEEE-ECGGGB--CSSCHHHHCCCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEECTTSCEEE
T ss_pred EEeeEEEEEEEcCCCCccCC-CCHhHc--ccccccccCCCCCCCEEEEEcCCCCEEeEEEeeeeeEEEEEEEECCCCeEE
Confidence 46788999999999999996 344442 23220 66666666665543 3357889999 36776444
Q ss_pred e
Q 009465 223 V 223 (534)
Q Consensus 223 v 223 (534)
+
T Consensus 106 ~ 106 (123)
T 2xdp_A 106 M 106 (123)
T ss_dssp E
T ss_pred e
Confidence 3
No 139
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=20.82 E-value=7.1e+02 Score=25.76 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=19.1
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEee
Q 009465 51 FRKFTDDGQYLISFSRNHQDLIVYRP 76 (534)
Q Consensus 51 lrKFTpDG~~LIaFS~dq~~L~vYry 76 (534)
-=.|+|||.++|+-+.+...+.+|.-
T Consensus 152 ~v~f~p~~~~~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSDDNTVAIFEG 177 (611)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEET
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 34699999976666666677888874
Done!