BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009466
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 18 IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75
+HC+ C + +K L+ + G+ + + D EQ ++V +V PS +I L GK A + G
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRG 72
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 19 HCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75
HC+ C + +K L+ + G+ + + D EQ +V +V PS +I L GK A + G
Sbjct: 15 HCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGKDAIIRG 71
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 20 CDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 73
C+ C V K L+K+ GV + E+G+ V G DP L++ + + G AE+
Sbjct: 11 CNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEV 64
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 32.0 bits (71), Expect = 0.93, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 7 MKIQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 66
M IQ V I C+ C V K +Q D T +D KVT++ + L +A
Sbjct: 1 MTIQLTV--PTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIAS 58
Query: 67 SGKHAE 72
+G E
Sbjct: 59 AGHEVE 64
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 18 IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAE 72
I C+ C V K +Q D T +D KVT++ + L +A +G E
Sbjct: 9 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 7 MKIQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 66
M IQ V I C+ C V K +Q D T +D KVT++ + L +A
Sbjct: 1 MTIQLTV--PTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIAS 58
Query: 67 SGKHAE 72
+G E
Sbjct: 59 AGYEVE 64
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 8 KIQTYVLKVNIHCDGCKHKVKKILQKID-GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 66
+I+ Y V + C GC V K+L K++ V I E+ V V + +++K+ K
Sbjct: 3 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKK 62
Query: 67 SGK 69
+GK
Sbjct: 63 TGK 65
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 18 IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 67
+ C C V+ + ++DGV ++ E GKV VS + D V +K +A +
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDAD-KVSVKDIADA 59
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 18 IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 67
+ C C V+ + ++DGV ++ E GKV VS + D V +K +A +
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDAD-KVSVKDIADA 59
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 8 KIQTYVLKVNIHCDGCKHKVKKILQKID-GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 66
+I+ Y V + C GC V K+L K++ V I E+ V V + +++K+ K
Sbjct: 3 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKK 62
Query: 67 SGKHA 71
+GK
Sbjct: 63 TGKEV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,960,488
Number of Sequences: 62578
Number of extensions: 132785
Number of successful extensions: 295
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 14
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)