Query 009466
Match_columns 534
No_of_seqs 277 out of 1594
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 13:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00403 HMA: Heavy-metal-asso 99.1 3.5E-10 7.6E-15 89.3 8.7 58 13-70 1-62 (62)
2 COG2608 CopZ Copper chaperone 99.0 1.6E-09 3.5E-14 89.2 9.1 65 10-74 2-70 (71)
3 KOG1603 Copper chaperone [Inor 98.8 1.7E-08 3.6E-13 83.5 8.7 68 8-75 3-71 (73)
4 KOG4656 Copper chaperone for s 98.7 5.2E-08 1.1E-12 95.1 8.9 71 9-79 6-76 (247)
5 PLN02957 copper, zinc superoxi 98.1 1.3E-05 2.9E-10 80.4 10.3 73 7-79 3-75 (238)
6 PRK10671 copA copper exporting 97.8 4.6E-05 9.9E-10 88.7 8.0 64 10-75 3-67 (834)
7 TIGR00003 copper ion binding p 97.7 0.00041 9E-09 50.4 8.9 61 11-71 3-67 (68)
8 COG2217 ZntA Cation transport 97.6 0.00013 2.7E-09 83.8 7.8 63 10-73 2-69 (713)
9 KOG0207 Cation transport ATPas 97.6 0.00014 3.1E-09 83.8 7.4 67 10-76 146-216 (951)
10 KOG0207 Cation transport ATPas 97.4 0.00031 6.7E-09 81.2 7.6 69 9-77 68-140 (951)
11 PRK10671 copA copper exporting 96.5 0.0059 1.3E-07 71.4 8.0 65 11-75 100-165 (834)
12 PRK11033 zntA zinc/cadmium/mer 95.9 0.022 4.8E-07 66.0 8.4 66 9-74 52-119 (741)
13 PF06524 NOA36: NOA36 protein; 95.2 0.013 2.7E-07 59.8 2.5 10 18-27 39-48 (314)
14 PF06524 NOA36: NOA36 protein; 94.3 0.027 5.9E-07 57.5 2.4 8 19-26 99-106 (314)
15 TIGR02052 MerP mercuric transp 93.5 0.87 1.9E-05 36.5 9.6 63 11-73 24-90 (92)
16 cd00371 HMA Heavy-metal-associ 92.0 1.4 3E-05 28.7 7.5 53 16-68 4-59 (63)
17 PRK13748 putative mercuric red 88.4 1.9 4.2E-05 47.8 9.0 65 13-77 3-70 (561)
18 PF05764 YL1: YL1 nuclear prot 86.3 0.58 1.3E-05 47.4 3.1 8 184-191 35-42 (240)
19 COG1888 Uncharacterized protei 83.9 5 0.00011 35.3 7.1 67 7-73 3-78 (97)
20 PF02680 DUF211: Uncharacteriz 83.5 7.5 0.00016 34.4 8.2 64 8-72 3-75 (95)
21 PTZ00415 transmission-blocking 81.9 0.85 1.8E-05 56.7 2.3 11 421-431 454-464 (2849)
22 PF04889 Cwf_Cwc_15: Cwf15/Cwc 80.9 0.78 1.7E-05 46.8 1.4 9 57-65 56-64 (244)
23 KOG1991 Nuclear transport rece 79.9 0.98 2.1E-05 53.5 1.9 17 56-72 802-818 (1010)
24 PF15243 ANAPC15: Anaphase-pro 75.8 4.3 9.2E-05 35.8 4.2 6 154-159 47-52 (92)
25 KOG3241 Uncharacterized conser 73.6 2.3 5E-05 41.7 2.2 14 19-32 44-57 (227)
26 KOG1991 Nuclear transport rece 73.5 1.7 3.8E-05 51.5 1.6 11 26-36 751-761 (1010)
27 PF01883 DUF59: Domain of unkn 68.6 8.8 0.00019 31.1 4.3 33 10-42 34-72 (72)
28 KOG1824 TATA-binding protein-i 68.1 2.7 5.9E-05 50.0 1.6 7 26-32 156-162 (1233)
29 PRK10553 assembly protein for 67.8 35 0.00076 29.7 8.0 47 21-67 16-63 (87)
30 PF01206 TusA: Sulfurtransfera 67.3 15 0.00032 29.5 5.3 54 13-75 2-58 (70)
31 PRK00058 methionine sulfoxide 66.7 15 0.00033 36.9 6.4 28 20-47 51-78 (213)
32 PRK14054 methionine sulfoxide 65.1 19 0.00041 35.1 6.5 28 21-48 10-37 (172)
33 PF09849 DUF2076: Uncharacteri 61.2 7 0.00015 40.1 2.9 12 26-37 8-19 (247)
34 PF02724 CDC45: CDC45-like pro 60.2 6 0.00013 45.5 2.5 25 14-38 4-29 (622)
35 PF02724 CDC45: CDC45-like pro 60.1 6.1 0.00013 45.4 2.6 20 12-31 28-48 (622)
36 PF03344 Daxx: Daxx Family; I 60.0 2.9 6.4E-05 48.7 0.0 9 58-66 299-307 (713)
37 PF14437 MafB19-deam: MafB19-l 59.2 18 0.00039 34.5 5.0 41 10-51 100-142 (146)
38 KOG2038 CAATT-binding transcri 58.3 5.5 0.00012 46.6 1.7 22 21-42 594-615 (988)
39 KOG2038 CAATT-binding transcri 57.3 5.8 0.00013 46.4 1.7 6 271-276 960-965 (988)
40 PF04050 Upf2: Up-frameshift s 56.9 3.6 7.7E-05 39.5 0.0 7 273-279 93-99 (170)
41 PF03927 NapD: NapD protein; 56.0 45 0.00098 28.2 6.5 46 21-67 14-60 (79)
42 PF14283 DUF4366: Domain of un 55.7 9 0.00019 38.6 2.6 18 53-70 103-120 (218)
43 cd04883 ACT_AcuB C-terminal AC 55.7 72 0.0016 25.0 7.4 60 13-72 3-69 (72)
44 KOG0127 Nucleolar protein fibr 54.8 6 0.00013 44.7 1.3 20 23-42 18-37 (678)
45 PF09849 DUF2076: Uncharacteri 54.2 12 0.00026 38.5 3.2 17 20-36 25-41 (247)
46 KOG0772 Uncharacterized conser 54.1 7 0.00015 43.9 1.6 7 63-69 43-49 (641)
47 PHA03346 US22 family homolog; 53.7 12 0.00026 42.3 3.4 10 21-30 235-244 (520)
48 cd04908 ACT_Bt0572_1 N-termina 53.2 86 0.0019 24.6 7.5 60 14-73 4-66 (66)
49 PRK05528 methionine sulfoxide 51.7 44 0.00096 32.0 6.5 27 21-47 8-34 (156)
50 PF13324 GCIP: Grap2 and cycli 51.2 5.6 0.00012 40.8 0.3 7 21-27 38-44 (275)
51 PF11702 DUF3295: Protein of u 50.0 8.7 0.00019 43.1 1.6 12 517-529 489-500 (507)
52 KOG0127 Nucleolar protein fibr 48.4 9.1 0.0002 43.3 1.4 28 24-51 57-88 (678)
53 cd02966 TlpA_like_family TlpA- 48.2 1.1E+02 0.0023 24.9 7.7 55 12-75 22-83 (116)
54 PF14492 EFG_II: Elongation Fa 48.0 66 0.0014 26.6 6.2 63 11-73 5-73 (75)
55 PF09580 Spore_YhcN_YlaJ: Spor 47.8 40 0.00086 31.9 5.5 34 19-52 72-105 (177)
56 PF10873 DUF2668: Protein of u 47.0 19 0.00041 34.3 3.1 21 486-506 109-137 (155)
57 PF13732 DUF4162: Domain of un 46.1 61 0.0013 26.6 5.8 47 31-78 26-73 (84)
58 PRK13014 methionine sulfoxide 45.8 43 0.00094 33.0 5.5 28 21-48 15-42 (186)
59 TIGR00993 3a0901s04IAP86 chlor 45.4 12 0.00027 43.6 2.0 6 274-279 553-558 (763)
60 KOG4364 Chromatin assembly fac 44.3 15 0.00032 42.5 2.3 19 18-36 366-384 (811)
61 KOG4032 Uncharacterized conser 43.5 15 0.00032 36.2 1.9 16 54-69 60-75 (184)
62 PTZ00482 membrane-attack compl 41.4 14 0.00031 43.9 1.7 14 30-43 15-28 (844)
63 PRK14425 acylphosphatase; Prov 40.9 1.6E+02 0.0034 25.7 7.7 55 11-66 7-66 (94)
64 PF11702 DUF3295: Protein of u 40.8 14 0.0003 41.6 1.4 6 470-475 446-451 (507)
65 TIGR01659 sex-lethal sex-letha 40.7 2.8E+02 0.006 29.8 11.1 54 13-67 195-255 (346)
66 PF01625 PMSR: Peptide methion 40.5 89 0.0019 29.8 6.6 27 21-47 7-33 (155)
67 PF08777 RRM_3: RNA binding mo 40.0 1E+02 0.0022 27.4 6.5 56 12-67 2-60 (105)
68 COG3076 Uncharacterized protei 38.7 16 0.00034 33.5 1.2 8 66-73 52-59 (135)
69 PTZ00329 eukaryotic translatio 38.5 20 0.00044 34.4 1.9 7 143-149 99-105 (155)
70 PRK11018 hypothetical protein; 38.4 89 0.0019 26.1 5.6 54 12-74 9-65 (78)
71 PRK05550 bifunctional methioni 38.2 76 0.0016 33.4 6.2 29 20-48 133-161 (283)
72 PRK12766 50S ribosomal protein 38.0 11 0.00024 38.3 0.1 7 63-69 18-24 (232)
73 KOG4364 Chromatin assembly fac 37.3 22 0.00047 41.2 2.2 12 463-475 739-750 (811)
74 TIGR03406 FeS_long_SufT probab 37.2 39 0.00084 32.9 3.7 35 11-45 114-154 (174)
75 PF00578 AhpC-TSA: AhpC/TSA fa 36.7 1E+02 0.0022 26.4 5.9 56 10-75 26-88 (124)
76 TIGR02300 FYDLN_acid conserved 35.9 27 0.00058 32.6 2.2 9 19-27 11-19 (129)
77 PHA03283 envelope glycoprotein 35.8 23 0.00051 39.9 2.2 12 178-189 442-453 (542)
78 PRK02048 4-hydroxy-3-methylbut 35.2 37 0.00081 39.1 3.7 26 14-39 514-550 (611)
79 KOG3540 Beta amyloid precursor 35.0 31 0.00067 38.7 2.9 10 56-65 79-88 (615)
80 cd02410 archeal_CPSF_KH The ar 34.8 83 0.0018 30.0 5.3 68 11-78 38-116 (145)
81 PRK02363 DNA-directed RNA poly 34.8 25 0.00053 32.8 1.8 10 56-65 21-30 (129)
82 PRK14440 acylphosphatase; Prov 34.7 1.7E+02 0.0036 25.3 6.9 56 10-66 3-63 (90)
83 COG1254 AcyP Acylphosphatases 34.6 2.2E+02 0.0048 25.0 7.6 58 9-67 3-65 (92)
84 KOG1924 RhoA GTPase effector D 34.3 46 0.00099 39.5 4.2 9 421-429 526-534 (1102)
85 cd04888 ACT_PheB-BS C-terminal 33.9 1E+02 0.0023 24.3 5.2 32 11-42 42-74 (76)
86 TIGR02945 SUF_assoc FeS assemb 33.3 32 0.00069 29.6 2.2 35 11-45 38-78 (99)
87 PRK14444 acylphosphatase; Prov 32.0 2.5E+02 0.0054 24.3 7.5 64 9-73 3-71 (92)
88 cd04906 ACT_ThrD-I_1 First of 31.7 3.1E+02 0.0066 22.9 8.2 63 13-76 3-74 (85)
89 KOG2548 SWAP mRNA splicing reg 31.0 34 0.00073 38.7 2.4 16 55-70 77-92 (653)
90 PRK07334 threonine dehydratase 30.8 1.6E+02 0.0035 31.9 7.5 64 11-74 326-402 (403)
91 cd03012 TlpA_like_DipZ_like Tl 30.5 1.6E+02 0.0034 25.9 6.3 61 11-75 25-91 (126)
92 KOG1189 Global transcriptional 30.2 30 0.00064 40.8 1.9 10 87-96 798-807 (960)
93 TIGR00993 3a0901s04IAP86 chlor 29.2 33 0.00071 40.3 2.0 6 68-73 201-206 (763)
94 PF08712 Nfu_N: Scaffold prote 29.1 1.2E+02 0.0025 26.2 4.9 41 25-67 37-79 (87)
95 cd04909 ACT_PDH-BS C-terminal 28.9 2.2E+02 0.0047 22.2 6.2 58 13-70 3-68 (69)
96 cd03420 SirA_RHOD_Pry_redox Si 28.6 1.4E+02 0.0031 24.1 5.2 53 14-75 2-57 (69)
97 cd03421 SirA_like_N SirA_like_ 28.5 1.2E+02 0.0026 24.1 4.7 50 15-74 3-55 (67)
98 COG4530 Uncharacterized protei 28.0 38 0.00082 31.0 1.8 19 9-27 15-36 (129)
99 PF05642 Sporozoite_P67: Sporo 27.9 43 0.00092 38.4 2.5 6 141-146 94-99 (727)
100 COG3076 Uncharacterized protei 27.6 31 0.00066 31.6 1.1 8 25-32 13-20 (135)
101 PRK14426 acylphosphatase; Prov 27.5 2.8E+02 0.0061 23.9 7.1 56 10-66 4-64 (92)
102 PF10628 CotE: Outer spore coa 27.4 34 0.00074 33.7 1.5 32 187-218 149-180 (182)
103 cd00291 SirA_YedF_YeeD SirA, Y 27.2 1.7E+02 0.0037 23.0 5.3 49 18-75 7-57 (69)
104 PRK11670 antiporter inner memb 27.1 1.4E+02 0.003 32.2 6.2 55 24-78 67-146 (369)
105 KOG3411 40S ribosomal protein 26.5 48 0.001 31.2 2.2 48 19-66 92-140 (143)
106 COG0225 MsrA Peptide methionin 26.4 1.7E+02 0.0036 28.8 6.0 28 21-48 13-40 (174)
107 PRK00694 4-hydroxy-3-methylbut 26.3 53 0.0011 37.8 2.9 25 14-38 506-541 (606)
108 PRK14441 acylphosphatase; Prov 26.3 4E+02 0.0086 23.1 7.8 58 8-66 3-65 (93)
109 TIGR02898 spore_YhcN_YlaJ spor 26.2 1.5E+02 0.0033 28.5 5.6 31 22-52 54-84 (158)
110 KOG1924 RhoA GTPase effector D 26.1 80 0.0017 37.6 4.3 7 423-429 522-528 (1102)
111 PRK14448 acylphosphatase; Prov 26.1 3.8E+02 0.0083 23.1 7.6 56 10-66 2-62 (90)
112 KOG0526 Nucleosome-binding fac 25.9 36 0.00079 38.6 1.6 10 143-152 418-427 (615)
113 PRK14429 acylphosphatase; Prov 25.9 3.5E+02 0.0076 23.2 7.4 55 11-66 3-62 (90)
114 KOG0339 ATP-dependent RNA heli 25.7 59 0.0013 37.1 3.1 54 19-78 447-502 (731)
115 cd04884 ACT_CBS C-terminal ACT 25.4 2.4E+02 0.0051 22.4 5.9 60 14-74 2-72 (72)
116 PF11491 DUF3213: Protein of u 24.8 1.2E+02 0.0026 26.6 4.1 58 14-72 3-64 (88)
117 COG2151 PaaD Predicted metal-s 24.7 94 0.002 28.3 3.7 33 12-44 51-89 (111)
118 cd01514 Elongation_Factor_C El 24.7 3.5E+02 0.0075 22.0 6.9 47 14-60 4-51 (79)
119 PF03958 Secretin_N: Bacterial 24.6 1.8E+02 0.004 23.5 5.2 54 13-67 3-76 (82)
120 KOG4730 D-arabinono-1, 4-lacto 24.5 44 0.00096 37.4 1.9 50 18-72 88-137 (518)
121 PF13291 ACT_4: ACT domain; PD 24.3 2E+02 0.0043 23.3 5.4 33 9-41 47-79 (80)
122 PF08534 Redoxin: Redoxin; In 24.0 2E+02 0.0044 25.6 5.9 54 10-74 29-90 (146)
123 TIGR00401 msrA methionine-S-su 23.8 2.3E+02 0.0051 26.9 6.4 28 21-48 7-34 (149)
124 PF10991 DUF2815: Protein of u 23.6 31 0.00066 33.9 0.4 8 58-65 45-52 (181)
125 COG0425 SirA Predicted redox p 23.4 2.1E+02 0.0046 24.1 5.4 53 11-72 5-61 (78)
126 PRK14424 acylphosphatase; Prov 23.3 4.3E+02 0.0092 23.1 7.4 64 9-73 6-74 (94)
127 PF09184 PPP4R2: PPP4R2; Inte 23.2 62 0.0013 33.9 2.6 13 25-37 115-127 (288)
128 PLN02925 4-hydroxy-3-methylbut 23.1 64 0.0014 37.9 2.9 25 14-38 630-665 (733)
129 PF15387 DUF4611: Domain of un 23.0 74 0.0016 28.3 2.6 6 147-152 35-40 (96)
130 TIGR02300 FYDLN_acid conserved 22.9 55 0.0012 30.6 1.9 17 13-29 19-38 (129)
131 PRK14437 acylphosphatase; Prov 22.8 4E+02 0.0086 24.0 7.3 56 10-66 23-83 (109)
132 COG3062 NapD Uncharacterized p 22.6 2.1E+02 0.0045 25.5 5.3 49 18-67 13-63 (94)
133 TIGR03675 arCOG00543 arCOG0054 22.3 1.4E+02 0.003 34.7 5.4 68 10-77 54-132 (630)
134 KOG3871 Cell adhesion complex 22.2 34 0.00075 37.1 0.5 28 186-213 94-121 (449)
135 COG5494 Predicted thioredoxin/ 21.8 1.8E+02 0.0039 29.7 5.3 55 10-65 9-85 (265)
136 PF14424 Toxin-deaminase: The 21.7 1.4E+02 0.003 27.8 4.3 29 11-39 98-127 (133)
137 TIGR00377 ant_ant_sig anti-ant 21.7 1.9E+02 0.004 24.4 4.9 67 10-78 12-85 (108)
138 PF15643 Tox-PL-2: Papain fold 21.6 70 0.0015 28.7 2.2 20 15-34 15-35 (100)
139 KOG2140 Uncharacterized conser 21.5 58 0.0013 37.2 2.1 36 56-95 291-326 (739)
140 smart00362 RRM_2 RNA recogniti 21.5 3.3E+02 0.0071 19.8 6.4 51 15-66 3-58 (72)
141 PRK14449 acylphosphatase; Prov 21.4 4.4E+02 0.0095 22.6 7.1 56 11-67 4-64 (90)
142 PF13740 ACT_6: ACT domain; PD 21.2 3.7E+02 0.008 21.9 6.4 56 11-66 2-64 (76)
143 cd03710 BipA_TypA_C BipA_TypA_ 21.1 2.8E+02 0.0061 22.8 5.7 47 14-60 4-51 (79)
144 PRK11200 grxA glutaredoxin 1; 21.1 1.7E+02 0.0038 24.0 4.5 27 18-45 9-39 (85)
145 cd03011 TlpA_like_ScsD_MtbDsbE 21.0 2.8E+02 0.0061 23.7 6.0 53 11-73 22-77 (123)
146 KOG2236 Uncharacterized conser 20.9 69 0.0015 35.8 2.4 40 179-218 135-174 (483)
147 PRK00299 sulfur transfer prote 20.8 3.1E+02 0.0066 23.1 5.9 55 11-74 9-66 (81)
148 KOG3360 Acylphosphatase [Energ 20.6 3.8E+02 0.0082 24.1 6.5 66 9-74 7-76 (98)
149 PRK14450 acylphosphatase; Prov 20.5 5.2E+02 0.011 22.2 7.4 55 11-66 3-63 (91)
150 cd03423 SirA SirA (also known 20.3 2.7E+02 0.0059 22.4 5.3 49 18-75 7-57 (69)
151 PRK10026 arsenate reductase; P 20.2 3.2E+02 0.0069 25.8 6.4 50 12-69 4-53 (141)
152 TIGR02159 PA_CoA_Oxy4 phenylac 20.1 1.1E+02 0.0024 28.9 3.4 58 11-70 26-89 (146)
153 PF04459 DUF512: Protein of un 20.1 2.7E+02 0.0058 27.8 6.2 62 14-75 98-168 (204)
154 PF05046 Img2: Mitochondrial l 20.0 4.2E+02 0.0092 22.7 6.7 55 14-69 32-87 (87)
No 1
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.11 E-value=3.5e-10 Score=89.30 Aligned_cols=58 Identities=34% Similarity=0.596 Sum_probs=54.0
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCc
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKH 70 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~ 70 (534)
+|+|. |+|.+|+.+|+++|++++||.+++|++.+.+++|+.+ +++++|+++|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 58998 9999999999999999999999999999999999865 5679999999999985
No 2
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.6e-09 Score=89.20 Aligned_cols=65 Identities=32% Similarity=0.571 Sum_probs=58.3
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--e-cCCHHHHHHHHHhcCCceEEc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--G-NVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g-~v~peeIieaIekaG~~A~l~ 74 (534)
.+++|+|+ |+|.+|+.+|+++|++|+||.+++|+++.++++|+ . .++.++|+++|+++||.+..+
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 46789999 99999999999999999999999999999777776 3 379999999999999987754
No 3
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.7e-08 Score=83.47 Aligned_cols=68 Identities=60% Similarity=0.987 Sum_probs=62.6
Q ss_pred cceEEEEEEEeccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcC-CceEEcC
Q 009466 8 KIQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSG-KHAELWG 75 (534)
Q Consensus 8 ~~qtv~LkV~M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG-~~A~l~~ 75 (534)
..+++++.|.|+|+.|..+|++.|..++||++++++....+|+|.+.+++..|++.|++.+ .++++|.
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~ 71 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWK 71 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEec
Confidence 4577889999999999999999999999999999999999999999999999999999887 7777764
No 4
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.70 E-value=5.2e-08 Score=95.06 Aligned_cols=71 Identities=31% Similarity=0.502 Sum_probs=66.4
Q ss_pred ceEEEEEEEeccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcCcccc
Q 009466 9 IQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQKA 79 (534)
Q Consensus 9 ~qtv~LkV~M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~~~~~ 79 (534)
..+++|.|.|+|++|+..|+..|+.++||.+|+|+++...|.|...+.+.+|+.+|+.+|.+|.|.....+
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~p 76 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKP 76 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCch
Confidence 45778999999999999999999999999999999999999999999999999999999999999887554
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=98.13 E-value=1.3e-05 Score=80.36 Aligned_cols=73 Identities=25% Similarity=0.447 Sum_probs=65.0
Q ss_pred ccceEEEEEEEeccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcCcccc
Q 009466 7 MKIQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQKA 79 (534)
Q Consensus 7 ~~~qtv~LkV~M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~~~~~ 79 (534)
+..++++|.|.|+|..|+.+|++.|+++++|..+.+++...+++|+..+..++|+++|++++|.++++.....
T Consensus 3 ~~~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~ 75 (238)
T PLN02957 3 LPELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDP 75 (238)
T ss_pred CCcEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCc
Confidence 4466777888899999999999999999999999999999999998777889999999999999988876444
No 6
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.79 E-value=4.6e-05 Score=88.67 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=57.3
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
++++|+|+ |+|.+|+.+|+++|++++||..++|++. +++|+..++.+.|+++|+++||++++..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 57889999 9999999999999999999999999994 4566666789999999999999988754
No 7
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.67 E-value=0.00041 Score=50.42 Aligned_cols=61 Identities=18% Similarity=0.438 Sum_probs=51.2
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCce
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A 71 (534)
++.|.|. ++|..|..+|++.|..+++|..+.+++...++.|+.. +....|+..|+..+|.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 4568899 9999999999999999999999999999998888742 46677777777877753
No 8
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00013 Score=83.77 Aligned_cols=63 Identities=27% Similarity=0.524 Sum_probs=56.5
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CC-HHHHHHHHHhcCCceEE
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VD-PSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~-peeIieaIekaG~~A~l 73 (534)
.+++|.|. |+|..|+.+|| +|++++||.+++||+.+++++|+.+ ++ .++++.+|+.++|.++.
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 45779999 99999999999 9999999999999999999998853 34 78999999999998764
No 9
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00014 Score=83.85 Aligned_cols=67 Identities=25% Similarity=0.395 Sum_probs=61.8
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe---cCCHHHHHHHHHhcCCceEEcCc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g---~v~peeIieaIekaG~~A~l~~~ 76 (534)
.+++|.|. |+|.+|+.+|++.|.+++||.+++|++.++++.|.. .+.+++|++.|+++++.+.+...
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~ 216 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPY 216 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeec
Confidence 68889999 999999999999999999999999999999999874 38999999999999999887663
No 10
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00031 Score=81.18 Aligned_cols=69 Identities=25% Similarity=0.413 Sum_probs=63.0
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcCcc
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWGAQ 77 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~~~ 77 (534)
..++.|+|. |+|.+|+..|++.|++++||.++.|.+..++++|..+ ++++.|.+.|+++||.+++++..
T Consensus 68 ~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~ 140 (951)
T KOG0207|consen 68 ASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESV 140 (951)
T ss_pred cceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcc
Confidence 347889999 9999999999999999999999999999999999853 79999999999999999987653
No 11
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.52 E-value=0.0059 Score=71.38 Aligned_cols=65 Identities=25% Similarity=0.456 Sum_probs=57.7
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
+++|.|. |+|..|+.+|++.|.++++|.++++++.+.++.|+...++++|.+.|++++|.+.++.
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~~ 165 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIE 165 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCccccc
Confidence 5678899 9999999999999999999999999999999888766788889999999999876543
No 12
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.91 E-value=0.022 Score=65.98 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=55.3
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec-CCHHHHHHHHHhcCCceEEc
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN-VDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~-v~peeIieaIekaG~~A~l~ 74 (534)
..++.++|. |+|.+|..+|++.|.++++|..+++++.+.++.|..+ ...++|.++|++++|.+..+
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~ 119 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE 119 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence 456778899 9999999999999999999999999999999888643 12367778889999987654
No 13
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=95.16 E-value=0.013 Score=59.79 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=5.5
Q ss_pred eccHHHHHHH
Q 009466 18 IHCDGCKHKV 27 (534)
Q Consensus 18 M~C~sC~~kI 27 (534)
|.|..|..+-
T Consensus 39 MeCdkC~r~Q 48 (314)
T PF06524_consen 39 MECDKCQRKQ 48 (314)
T ss_pred ccchhhhhhc
Confidence 5566665444
No 14
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=94.29 E-value=0.027 Score=57.46 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=3.5
Q ss_pred ccHHHHHH
Q 009466 19 HCDGCKHK 26 (534)
Q Consensus 19 ~C~sC~~k 26 (534)
.|..|..-
T Consensus 99 iCDfCEaw 106 (314)
T PF06524_consen 99 ICDFCEAW 106 (314)
T ss_pred hhccchhh
Confidence 34444433
No 15
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=93.49 E-value=0.87 Score=36.47 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=47.2
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe---cCCHHHHHHHHHhcCCceEE
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g---~v~peeIieaIekaG~~A~l 73 (534)
++.+.+. +.|..|...++..+...++|..+.+.+...++.+.. ......+...++++++.+++
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 4566677 899999999999999999988888888877766652 23555565666777776543
No 16
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=91.96 E-value=1.4 Score=28.69 Aligned_cols=53 Identities=38% Similarity=0.720 Sum_probs=35.9
Q ss_pred EE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec--CCHHHHHHHHHhcC
Q 009466 16 VN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSG 68 (534)
Q Consensus 16 V~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~--v~peeIieaIekaG 68 (534)
+. +.|..|...++..+....+|....+.+...++.+... .....+...++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAG 59 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcC
Confidence 45 7899999999999888888877777777666555532 23444434444443
No 17
>PRK13748 putative mercuric reductase; Provisional
Probab=88.44 E-value=1.9 Score=47.84 Aligned_cols=65 Identities=29% Similarity=0.508 Sum_probs=52.0
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe--cCCHHHHHHHHHhcCCceEEcCcc
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAELWGAQ 77 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g--~v~peeIieaIekaG~~A~l~~~~ 77 (534)
.+.+. ++|..|..+++..+..+++|..+.+++...++.+.. ....+.+...++++++.++++...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~~ 70 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADAP 70 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCcc
Confidence 35677 999999999999999999999899998888877663 245666777788889887776664
No 18
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.29 E-value=0.58 Score=47.37 Aligned_cols=8 Identities=50% Similarity=0.841 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 009466 184 FNIPDDDE 191 (534)
Q Consensus 184 ~~~~~~dd 191 (534)
|.++++|+
T Consensus 35 f~Eee~D~ 42 (240)
T PF05764_consen 35 FQEEEDDE 42 (240)
T ss_pred ccccCCCc
Confidence 44444443
No 19
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.86 E-value=5 Score=35.35 Aligned_cols=67 Identities=25% Similarity=0.289 Sum_probs=44.0
Q ss_pred ccceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEE-----EecCCCeE--EEEe-cCCHHHHHHHHHhcCCceEE
Q 009466 7 MKIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTS-----IDSEQGKV--TVSG-NVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 7 ~~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~-----Vnl~~gkV--tV~g-~v~peeIieaIekaG~~A~l 73 (534)
...++++|.|. -+..-..-.+.+.|.+++||..|+ ++.++..+ +|++ +++.++|.+.|++.|-.+..
T Consensus 3 ~~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHS 78 (97)
T COG1888 3 KGIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHS 78 (97)
T ss_pred ccceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeee
Confidence 34678888887 453333345667778888865554 33444444 4444 58999999999999975543
No 20
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=83.48 E-value=7.5 Score=34.44 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=43.9
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEE-----ecCCCeEEE--Ee-cCCHHHHHHHHHhcCCceE
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSI-----DSEQGKVTV--SG-NVDPSVLIKKLAKSGKHAE 72 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~V-----nl~~gkVtV--~g-~v~peeIieaIekaG~~A~ 72 (534)
..+|++|.|. -|-++-. .+.+.|.+++||..+++ +.++..+.| ++ .++.++|.++|++.|-.+.
T Consensus 3 ~irRlVLDVlKP~~p~i~-e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IH 75 (95)
T PF02680_consen 3 GIRRLVLDVLKPHEPSIV-ELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIH 75 (95)
T ss_dssp SEEEEEEEEEEESSS-HH-HHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEE
T ss_pred ceeEEEEEeecCCCCCHH-HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEE
Confidence 4678888888 6555554 67788999999877754 344444444 44 4899999999999986544
No 21
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=81.91 E-value=0.85 Score=56.67 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=5.4
Q ss_pred CCCCccCCCcc
Q 009466 421 SVPAVQGLPAA 431 (534)
Q Consensus 421 ~~pa~~glp~~ 431 (534)
.+|-+--|.|+
T Consensus 454 ~~pc~fqlnag 464 (2849)
T PTZ00415 454 KHPCVFKLNAG 464 (2849)
T ss_pred CCceEEEeccc
Confidence 34555555543
No 22
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=80.94 E-value=0.78 Score=46.80 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 009466 57 PSVLIKKLA 65 (534)
Q Consensus 57 peeIieaIe 65 (534)
..+|.+.|+
T Consensus 56 ~rdlr~eLe 64 (244)
T PF04889_consen 56 KRDLRAELE 64 (244)
T ss_pred HHHHHHHHH
Confidence 344444443
No 23
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.87 E-value=0.98 Score=53.55 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=9.1
Q ss_pred CHHHHHHHHHhcCCceE
Q 009466 56 DPSVLIKKLAKSGKHAE 72 (534)
Q Consensus 56 ~peeIieaIekaG~~A~ 72 (534)
.|...+..|++.++...
T Consensus 802 nP~ltL~iLe~~~~~~~ 818 (1010)
T KOG1991|consen 802 NPKLTLGILENQGFLNN 818 (1010)
T ss_pred CcHHHHHHHHHcCCccc
Confidence 44445556666666433
No 24
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=75.79 E-value=4.3 Score=35.76 Aligned_cols=6 Identities=33% Similarity=0.346 Sum_probs=2.7
Q ss_pred CCCCCC
Q 009466 154 QDLKLP 159 (534)
Q Consensus 154 ~d~k~p 159 (534)
|+.+|.
T Consensus 47 kd~nlv 52 (92)
T PF15243_consen 47 KDNNLV 52 (92)
T ss_pred hccCcC
Confidence 444443
No 25
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.65 E-value=2.3 Score=41.65 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.6
Q ss_pred ccHHHHHHHHHHHh
Q 009466 19 HCDGCKHKVKKILQ 32 (534)
Q Consensus 19 ~C~sC~~kIekaL~ 32 (534)
.|..|...|+..++
T Consensus 44 VCqRCkEqieWk~K 57 (227)
T KOG3241|consen 44 VCQRCKEQIEWKRK 57 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999988765
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.47 E-value=1.7 Score=51.54 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=4.5
Q ss_pred HHHHHHhcCCC
Q 009466 26 KVKKILQKIDG 36 (534)
Q Consensus 26 kIekaL~kI~G 36 (534)
.++-++....|
T Consensus 751 Lle~iiL~~kg 761 (1010)
T KOG1991|consen 751 LLEVIILNCKG 761 (1010)
T ss_pred HHHHHHHHhcC
Confidence 34444444444
No 27
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=68.59 E-value=8.8 Score=31.08 Aligned_cols=33 Identities=12% Similarity=0.437 Sum_probs=22.6
Q ss_pred eEEEEEEEeccHHH------HHHHHHHHhcCCCeeEEEE
Q 009466 10 QTYVLKVNIHCDGC------KHKVKKILQKIDGVFTTSI 42 (534)
Q Consensus 10 qtv~LkV~M~C~sC------~~kIekaL~kI~GV~sv~V 42 (534)
.++.|.|.+.++.| ...|+.+|+.+++|.+|+|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 45666666665555 5778899999999998876
No 28
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=68.07 E-value=2.7 Score=50.01 Aligned_cols=7 Identities=14% Similarity=0.339 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 009466 26 KVKKILQ 32 (534)
Q Consensus 26 kIekaL~ 32 (534)
.+...|.
T Consensus 156 il~d~ls 162 (1233)
T KOG1824|consen 156 ILADVLS 162 (1233)
T ss_pred HHHHHHH
Confidence 3333333
No 29
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=67.81 E-value=35 Score=29.65 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe-cCCHHHHHHHHHhc
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG-NVDPSVLIKKLAKS 67 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g-~v~peeIieaIeka 67 (534)
+.-...|.+.|.+++++.-...+.+.+|++|+- ..+.++++++|+.+
T Consensus 16 Pe~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~~I 63 (87)
T PRK10553 16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESV 63 (87)
T ss_pred hHHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHHHH
Confidence 555778999999999998877877888888773 35667666666543
No 30
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=67.28 E-value=15 Score=29.54 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=37.7
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEcC
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~~ 75 (534)
+|.+- ..|+.+.-+++++|.+++-= .+++|. ...+.++|.+.+++.|+.+..+.
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~ 58 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCEENGYEVVEVE 58 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 45555 79999999999999987332 233333 23567889999999999755543
No 31
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=66.71 E-value=15 Score=36.89 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHhcCCCeeEEEEecCCC
Q 009466 20 CDGCKHKVKKILQKIDGVFTTSIDSEQG 47 (534)
Q Consensus 20 C~sC~~kIekaL~kI~GV~sv~Vnl~~g 47 (534)
-..|-+-+|..+.+|+||.+++|-+..+
T Consensus 51 agGCFWg~E~~F~~l~GV~~t~vGYagG 78 (213)
T PRK00058 51 GMGCFWGAERLFWQLPGVYSTAVGYAGG 78 (213)
T ss_pred EccCcchhHHHHhcCCCEEEEEeeecCC
Confidence 3778888899999999999999887744
No 32
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=65.13 E-value=19 Score=35.07 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCe
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK 48 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gk 48 (534)
..|-.-+|..+.+|+||.+++|-.+.+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 6788888999999999999998777664
No 33
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=61.23 E-value=7 Score=40.09 Aligned_cols=12 Identities=0% Similarity=0.337 Sum_probs=5.0
Q ss_pred HHHHHHhcCCCe
Q 009466 26 KVKKILQKIDGV 37 (534)
Q Consensus 26 kIekaL~kI~GV 37 (534)
.|+..+.+|..|
T Consensus 8 LI~~lf~RL~~a 19 (247)
T PF09849_consen 8 LIDDLFSRLKQA 19 (247)
T ss_pred HHHHHHHHHHhc
Confidence 344444444333
No 34
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=60.16 E-value=6 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=17.6
Q ss_pred EEEEecc-HHHHHHHHHHHhcCCCee
Q 009466 14 LKVNIHC-DGCKHKVKKILQKIDGVF 38 (534)
Q Consensus 14 LkV~M~C-~sC~~kIekaL~kI~GV~ 38 (534)
|-|.+.| .-|+.+|-..|.+-+.|.
T Consensus 4 i~v~~dvDalcA~kiL~~Llk~d~I~ 29 (622)
T PF02724_consen 4 ILVALDVDALCACKILTSLLKSDNIQ 29 (622)
T ss_pred EEEcCChHHHHHHHHHHHHHHhcCCC
Confidence 3344555 678899988888877773
No 35
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=60.12 E-value=6.1 Score=45.43 Aligned_cols=20 Identities=5% Similarity=-0.089 Sum_probs=10.9
Q ss_pred EEEEEE-eccHHHHHHHHHHH
Q 009466 12 YVLKVN-IHCDGCKHKVKKIL 31 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL 31 (534)
|.|+|. +.+..+..++-..|
T Consensus 28 I~~~l~PV~gy~el~~~~~~~ 48 (622)
T PF02724_consen 28 IQYSLVPVSGYSELERAYEEL 48 (622)
T ss_pred CCeeEEEeCCHHHHHHHHHHH
Confidence 456655 66665555554444
No 36
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=59.96 E-value=2.9 Score=48.71 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHh
Q 009466 58 SVLIKKLAK 66 (534)
Q Consensus 58 eeIieaIek 66 (534)
.+|++.|++
T Consensus 299 ~Dvl~~v~~ 307 (713)
T PF03344_consen 299 HDVLQCVEK 307 (713)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 334444433
No 37
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=59.20 E-value=18 Score=34.46 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=32.4
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecC-CCeEEE
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE-QGKVTV 51 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~-~gkVtV 51 (534)
..+++.|. -.|..|..-|...++++ |+.+++|... ++++.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 45778888 89999999998888875 8888888766 665544
No 38
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=58.29 E-value=5.5 Score=46.62 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCCCeeEEEE
Q 009466 21 DGCKHKVKKILQKIDGVFTTSI 42 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~V 42 (534)
++|.-.|.++|+..+.+++..|
T Consensus 594 ~G~l~Llsel~Karp~l~~lv~ 615 (988)
T KOG2038|consen 594 CGILFLLSELLKARPTLRKLVV 615 (988)
T ss_pred HhHHHHHHHHHHhcchHHHHhh
Confidence 4566667777777766544433
No 39
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=57.25 E-value=5.8 Score=46.42 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.8
Q ss_pred CCCCCe
Q 009466 271 GGPMPV 276 (534)
Q Consensus 271 ~~~~p~ 276 (534)
..+.||
T Consensus 960 ~~d~pv 965 (988)
T KOG2038|consen 960 LNDSPV 965 (988)
T ss_pred cccchh
Confidence 444454
No 40
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=56.91 E-value=3.6 Score=39.53 Aligned_cols=7 Identities=43% Similarity=1.151 Sum_probs=0.0
Q ss_pred CCCeeee
Q 009466 273 PMPVQVN 279 (534)
Q Consensus 273 ~~p~~~~ 279 (534)
+||+.++
T Consensus 93 ~iP~~~~ 99 (170)
T PF04050_consen 93 PIPMNVK 99 (170)
T ss_dssp -------
T ss_pred ccCcccc
Confidence 4444444
No 41
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=55.97 E-value=45 Score=28.18 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE-ecCCHHHHHHHHHhc
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS-GNVDPSVLIKKLAKS 67 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~-g~v~peeIieaIeka 67 (534)
+.-...|++.|..++||.-..++.. ++++|+ ...+.+++++.|+.+
T Consensus 14 p~~~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~~i 60 (79)
T PF03927_consen 14 PERLEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLIDAI 60 (79)
T ss_dssp CCCHHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHHHH
Confidence 3446789999999999977677666 777776 345777777777654
No 42
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=55.69 E-value=9 Score=38.60 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=13.0
Q ss_pred ecCCHHHHHHHHHhcCCc
Q 009466 53 GNVDPSVLIKKLAKSGKH 70 (534)
Q Consensus 53 g~v~peeIieaIekaG~~ 70 (534)
..|+.++|+..+++....
T Consensus 103 n~VdE~DLl~l~e~~~~~ 120 (218)
T PF14283_consen 103 NQVDEADLLALMEEEEET 120 (218)
T ss_pred ccCCHHHHHHHHhccCCc
Confidence 347888999888765543
No 43
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.67 E-value=72 Score=25.00 Aligned_cols=60 Identities=12% Similarity=0.245 Sum_probs=33.9
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCC-CeeEEEEecC--CCe--EEEEec-CCHHHHHHHHHhcCCceE
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKID-GVFTTSIDSE--QGK--VTVSGN-VDPSVLIKKLAKSGKHAE 72 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~-GV~sv~Vnl~--~gk--VtV~g~-v~peeIieaIekaG~~A~ 72 (534)
+|+|. -..+....+|...|.+.. -|.++.+... .+. ++|+.+ .+.++++++|++.||.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 34444 234456667777766543 2444443332 122 334432 466799999999999654
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=54.82 E-value=6 Score=44.67 Aligned_cols=20 Identities=0% Similarity=0.159 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCCeeEEEE
Q 009466 23 CKHKVKKILQKIDGVFTTSI 42 (534)
Q Consensus 23 C~~kIekaL~kI~GV~sv~V 42 (534)
-...++...+.+-.|..+.|
T Consensus 18 ~~~qL~e~FS~vGPik~~~v 37 (678)
T KOG0127|consen 18 TGEQLEEFFSYVGPIKHAVV 37 (678)
T ss_pred chhHHHHhhhcccCcceeEE
Confidence 33444444454444444433
No 45
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=54.16 E-value=12 Score=38.46 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=10.6
Q ss_pred cHHHHHHHHHHHhcCCC
Q 009466 20 CDGCKHKVKKILQKIDG 36 (534)
Q Consensus 20 C~sC~~kIekaL~kI~G 36 (534)
-......|...|.+-+.
T Consensus 25 D~eAe~lI~~~~~~qP~ 41 (247)
T PF09849_consen 25 DPEAEALIAQALARQPD 41 (247)
T ss_pred CHHHHHHHHHHHHhCCc
Confidence 34456677777776654
No 46
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=54.11 E-value=7 Score=43.91 Aligned_cols=7 Identities=0% Similarity=-0.088 Sum_probs=3.1
Q ss_pred HHHhcCC
Q 009466 63 KLAKSGK 69 (534)
Q Consensus 63 aIekaG~ 69 (534)
+|+++-+
T Consensus 43 ti~~~~~ 49 (641)
T KOG0772|consen 43 TISDLQF 49 (641)
T ss_pred hhhhccc
Confidence 3544443
No 47
>PHA03346 US22 family homolog; Provisional
Probab=53.70 E-value=12 Score=42.29 Aligned_cols=10 Identities=10% Similarity=0.281 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 009466 21 DGCKHKVKKI 30 (534)
Q Consensus 21 ~sC~~kIeka 30 (534)
..|...|...
T Consensus 235 ~~~~~~i~~R 244 (520)
T PHA03346 235 AECRMYITLR 244 (520)
T ss_pred HHHHHHHHhh
Confidence 4444454444
No 48
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=53.23 E-value=86 Score=24.64 Aligned_cols=60 Identities=22% Similarity=0.132 Sum_probs=35.1
Q ss_pred EEEE-eccHHHHHHHHHHHhcCCC-eeEEEEecCCCeEEEE-ecCCHHHHHHHHHhcCCceEE
Q 009466 14 LKVN-IHCDGCKHKVKKILQKIDG-VFTTSIDSEQGKVTVS-GNVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 14 LkV~-M~C~sC~~kIekaL~kI~G-V~sv~Vnl~~gkVtV~-g~v~peeIieaIekaG~~A~l 73 (534)
|.|. -..+.-..+|.++|.+-.- |.++.+.....+++++ ...+++.+++.|++.||++.+
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHCCCEEEC
Confidence 4444 3455666677777765433 3444443332334433 224677999999999998653
No 49
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=51.72 E-value=44 Score=32.04 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQG 47 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~g 47 (534)
..|-.-+|..+.+|+||.+++|-...+
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG 34 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANG 34 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCC
Confidence 678888899999999999998876654
No 50
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=51.22 E-value=5.6 Score=40.80 Aligned_cols=7 Identities=0% Similarity=0.045 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 009466 21 DGCKHKV 27 (534)
Q Consensus 21 ~sC~~kI 27 (534)
..+...|
T Consensus 38 ~~~~~~l 44 (275)
T PF13324_consen 38 ESLFNAL 44 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 51
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=50.04 E-value=8.7 Score=43.07 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCC
Q 009466 517 PGYTHFFSDENTS 529 (534)
Q Consensus 517 ~~~~~~f~den~~ 529 (534)
.+++||| |+.++
T Consensus 489 ~swn~yf-~~~~~ 500 (507)
T PF11702_consen 489 SSWNQYF-DYGPW 500 (507)
T ss_pred cchhhhh-ccCCc
Confidence 4778999 65444
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=48.45 E-value=9.1 Score=43.29 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCC----eeEEEEecCCCeEEE
Q 009466 24 KHKVKKILQKIDG----VFTTSIDSEQGKVTV 51 (534)
Q Consensus 24 ~~kIekaL~kI~G----V~sv~Vnl~~gkVtV 51 (534)
..-++++|..+.. -+.++|+++..+.+.
T Consensus 57 ~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~ 88 (678)
T KOG0127|consen 57 EEDVQRALAETEQSKFEGRILNVDPAKKRARS 88 (678)
T ss_pred HhHHHHHHHHhhcCcccceecccccccccccc
Confidence 4455555555544 133445545444443
No 53
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=48.22 E-value=1.1e+02 Score=24.86 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=29.0
Q ss_pred EEEEEE-eccHHHHHHHHHHHh---cC--CCeeEEEEecCCCeEEEEecC-CHHHHHHHHHhcCCceEEcC
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQ---KI--DGVFTTSIDSEQGKVTVSGNV-DPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~---kI--~GV~sv~Vnl~~gkVtV~g~v-~peeIieaIekaG~~A~l~~ 75 (534)
+.|-+. .+|..|...+...-+ ++ ..|.-+ .|..+. +.+++.+.+++......++.
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~---------~v~~d~~~~~~~~~~~~~~~~~~~~~~ 83 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVV---------GVNVDDDDPAAVKAFLKKYGITFPVLL 83 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEE---------EEECCCCCHHHHHHHHHHcCCCcceEE
Confidence 344444 799999765433321 21 122222 233222 37888888887765554443
No 54
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=47.96 E-value=66 Score=26.63 Aligned_cols=63 Identities=24% Similarity=0.397 Sum_probs=40.9
Q ss_pred EEEEEEEeccHHHHHHHHHHHhcC---CCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHh-cCCceEE
Q 009466 11 TYVLKVNIHCDGCKHKVKKILQKI---DGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAK-SGKHAEL 73 (534)
Q Consensus 11 tv~LkV~M~C~sC~~kIekaL~kI---~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIek-aG~~A~l 73 (534)
.+.++|.-.-..-..++..+|.+| +=..++.++.+++.++|. +++..+.+++.|++ .+..+++
T Consensus 5 v~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~ 73 (75)
T PF14492_consen 5 VLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEF 73 (75)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEE
T ss_pred eEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEe
Confidence 345555533445556666666655 224478889999998887 46788888888874 4555543
No 55
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=47.75 E-value=40 Score=31.94 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE
Q 009466 19 HCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS 52 (534)
Q Consensus 19 ~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~ 52 (534)
.-..-+..|++.|.++++|..+.|-.....+.|.
T Consensus 72 ~~~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Va 105 (177)
T PF09580_consen 72 DRQQLADRIANRVKKVPGVEDATVVVTDDNAYVA 105 (177)
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEEEECCEEEEE
Confidence 3456688999999999999999998888888775
No 56
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=46.99 E-value=19 Score=34.31 Aligned_cols=21 Identities=38% Similarity=0.825 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCC--------CCCCCCCCC
Q 009466 486 MYARPPPAVNYM--------PQHPYPPYP 506 (534)
Q Consensus 486 ~Y~~pp~~~~y~--------pp~py~~y~ 506 (534)
+|..+||++.|- .||||++++
T Consensus 109 SyP~apPpysy~~e~~~~~d~PPpYsp~~ 137 (155)
T PF10873_consen 109 SYPAAPPPYSYDHEMEYPPDLPPPYSPTP 137 (155)
T ss_pred ccCCCCCCccccccccccCCCCcCCCCcc
Confidence 455445555552 245576653
No 57
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=46.05 E-value=61 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=32.9
Q ss_pred HhcCCCeeEEEEecCC-CeEEEEecCCHHHHHHHHHhcCCceEEcCccc
Q 009466 31 LQKIDGVFTTSIDSEQ-GKVTVSGNVDPSVLIKKLAKSGKHAELWGAQK 78 (534)
Q Consensus 31 L~kI~GV~sv~Vnl~~-gkVtV~g~v~peeIieaIekaG~~A~l~~~~~ 78 (534)
|..+++|.++...... -++.|.......+|++.|.+.++ +......+
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~~~ 73 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI-IRSFEEEE 73 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC-eeEEEEcC
Confidence 7888999988764332 33444455678899999999998 66555433
No 58
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=45.83 E-value=43 Score=33.05 Aligned_cols=28 Identities=25% Similarity=0.486 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCe
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK 48 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gk 48 (534)
..|-.-+|..+.+|+||.+++|-...+.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~ 42 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGH 42 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCC
Confidence 6777788889999999999998777663
No 59
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=45.42 E-value=12 Score=43.61 Aligned_cols=6 Identities=50% Similarity=0.650 Sum_probs=3.0
Q ss_pred CCeeee
Q 009466 274 MPVQVN 279 (534)
Q Consensus 274 ~p~~~~ 279 (534)
+-|||.
T Consensus 553 ~~~q~~ 558 (763)
T TIGR00993 553 VTVQVT 558 (763)
T ss_pred EEEEEe
Confidence 335555
No 60
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=44.33 E-value=15 Score=42.47 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=11.2
Q ss_pred eccHHHHHHHHHHHhcCCC
Q 009466 18 IHCDGCKHKVKKILQKIDG 36 (534)
Q Consensus 18 M~C~sC~~kIekaL~kI~G 36 (534)
..|..-...|.+.+.++.-
T Consensus 366 ~rkkr~~aei~Kffqk~~~ 384 (811)
T KOG4364|consen 366 LRKKRHEAEIGKFFQKIDN 384 (811)
T ss_pred HHHHHHHHHHHhhhccccc
Confidence 4455566666666666543
No 61
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.55 E-value=15 Score=36.17 Aligned_cols=16 Identities=13% Similarity=0.001 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHhcCC
Q 009466 54 NVDPSVLIKKLAKSGK 69 (534)
Q Consensus 54 ~v~peeIieaIekaG~ 69 (534)
.+..++|.+.|.+...
T Consensus 60 dV~~~eieE~L~~~l~ 75 (184)
T KOG4032|consen 60 DVKAREIEELLLELLG 75 (184)
T ss_pred chhHHHHHHHHHHHHH
Confidence 3667777777776554
No 62
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Probab=41.42 E-value=14 Score=43.90 Aligned_cols=14 Identities=21% Similarity=0.050 Sum_probs=6.2
Q ss_pred HHhcCCCeeEEEEe
Q 009466 30 ILQKIDGVFTTSID 43 (534)
Q Consensus 30 aL~kI~GV~sv~Vn 43 (534)
.|-+++-|...++.
T Consensus 15 ~~~~~~~~~~~~~~ 28 (844)
T PTZ00482 15 YLYEIPFVGSLRLG 28 (844)
T ss_pred hhhccccceeeeec
Confidence 34444444444443
No 63
>PRK14425 acylphosphatase; Provisional
Probab=40.93 E-value=1.6e+02 Score=25.70 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=35.8
Q ss_pred EEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHh
Q 009466 11 TYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (534)
Q Consensus 11 tv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIek 66 (534)
++.+.|. +.+-.....+.+...++ ++.-+.-|+..++|+|... ...+++++.|++
T Consensus 7 ~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 7 AVRVRITGRVQGVGFRDWTRDEAERL-GLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred EEEEEEEEeEecccchHHHHHHHHHh-CCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 5667777 55555555555554443 5767778899988887632 456777778875
No 64
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=40.82 E-value=14 Score=41.56 Aligned_cols=6 Identities=33% Similarity=0.302 Sum_probs=3.5
Q ss_pred HHHHHH
Q 009466 470 MMNQQR 475 (534)
Q Consensus 470 mm~~q~ 475 (534)
..+||.
T Consensus 446 werqqk 451 (507)
T PF11702_consen 446 WERQQK 451 (507)
T ss_pred HHHHhh
Confidence 566664
No 65
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=40.75 E-value=2.8e+02 Score=29.76 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=31.6
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCC------CeEEEEecCCHHHHHHHHHhc
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQ------GKVTVSGNVDPSVLIKKLAKS 67 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~------gkVtV~g~v~peeIieaIeka 67 (534)
+|-|. |.-......|++++++.-.|.+++|.... +.+.|+. .+.++..++|+.+
T Consensus 195 ~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F-~~~e~A~~Ai~~l 255 (346)
T TIGR01659 195 NLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRF-NKREEAQEAISAL 255 (346)
T ss_pred eeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEE-CCHHHHHHHHHHh
Confidence 34454 44444466788888887778777765432 1233432 3566666666654
No 66
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=40.52 E-value=89 Score=29.83 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQG 47 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~g 47 (534)
..|-..+|..+.+++||.+++|-.+.+
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG 33 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGG 33 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESS
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCC
Confidence 578888899999999999999875544
No 67
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=39.97 E-value=1e+02 Score=27.37 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=33.3
Q ss_pred EEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec--CCHHHHHHHHHhc
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKS 67 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~--v~peeIieaIeka 67 (534)
++|+|. ++-+.|...|+.+|+....|.-|++..-..+..|+-. .....+++++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 356666 6656669999999999999999888887777788743 3466777777665
No 68
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.68 E-value=16 Score=33.46 Aligned_cols=8 Identities=25% Similarity=0.136 Sum_probs=5.0
Q ss_pred hcCCceEE
Q 009466 66 KSGKHAEL 73 (534)
Q Consensus 66 kaG~~A~l 73 (534)
++||.++-
T Consensus 52 K~GyEV~e 59 (135)
T COG3076 52 KLGYEVTE 59 (135)
T ss_pred hhcceecc
Confidence 67776554
No 69
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=38.49 E-value=20 Score=34.42 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.5
Q ss_pred HHHHHHh
Q 009466 143 QLQHLQQ 149 (534)
Q Consensus 143 q~qq~qq 149 (534)
|...|..
T Consensus 99 evr~Lk~ 105 (155)
T PTZ00329 99 EARALKQ 105 (155)
T ss_pred HHHHHHH
Confidence 4555554
No 70
>PRK11018 hypothetical protein; Provisional
Probab=38.37 E-value=89 Score=26.12 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=38.8
Q ss_pred EEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEc
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~ 74 (534)
.+|.+. ..|+.-.-+.+++|+++.-- .+++|. ...+.+.|.+.+++.|+.+...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 456666 89999999999999987432 222332 2356778888899999987643
No 71
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=38.22 E-value=76 Score=33.35 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHhcCCCeeEEEEecCCCe
Q 009466 20 CDGCKHKVKKILQKIDGVFTTSIDSEQGK 48 (534)
Q Consensus 20 C~sC~~kIekaL~kI~GV~sv~Vnl~~gk 48 (534)
-..|-.-+|..+.+|+||.+++|-...+.
T Consensus 133 agGCFWg~E~~F~~~~GV~~t~vGYagG~ 161 (283)
T PRK05550 133 AGGCFWGVEYYFKKLPGVLSVESGYTGGD 161 (283)
T ss_pred ecCCchhhhhhHhhCcCEEEEEEeeCCCC
Confidence 47888889999999999999988766553
No 72
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=37.98 E-value=11 Score=38.33 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=3.0
Q ss_pred HHHhcCC
Q 009466 63 KLAKSGK 69 (534)
Q Consensus 63 aIekaG~ 69 (534)
+|.++||
T Consensus 18 kLl~~GF 24 (232)
T PRK12766 18 ALREAGF 24 (232)
T ss_pred HHHHcCC
Confidence 3444444
No 73
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=37.29 E-value=22 Score=41.21 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 009466 463 QQYMAAAMMNQQR 475 (534)
Q Consensus 463 qq~~~~~mm~~q~ 475 (534)
-++. +++.-||.
T Consensus 739 cw~V-~~l~~Fq~ 750 (811)
T KOG4364|consen 739 CWKV-RELSDFQD 750 (811)
T ss_pred HHHH-HHHHhccc
Confidence 3345 45666664
No 74
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=37.21 E-value=39 Score=32.92 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=24.0
Q ss_pred EEEEEEEeccHHH------HHHHHHHHhcCCCeeEEEEecC
Q 009466 11 TYVLKVNIHCDGC------KHKVKKILQKIDGVFTTSIDSE 45 (534)
Q Consensus 11 tv~LkV~M~C~sC------~~kIekaL~kI~GV~sv~Vnl~ 45 (534)
++.|.|.++++.| ...|+.+|.++++|.+++|++.
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~ 154 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELV 154 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEE
Confidence 4555555554444 3558889999999998887643
No 75
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=36.69 E-value=1e+02 Score=26.41 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=30.8
Q ss_pred eEEEEEEE-e-ccHHHHHHHHHH---HhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 10 QTYVLKVN-I-HCDGCKHKVKKI---LQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 10 qtv~LkV~-M-~C~sC~~kIeka---L~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
..++|-+- . +|+.|...+... +.+++ +|.-+.|+. ...+++.+.+++..+...++.
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~----------d~~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIST----------DDPEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES----------SSHHHHHHHHHHHTCSSEEEE
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccc----------ccccchhhhhhhhcccccccc
Confidence 34455555 5 899998766443 33322 443332222 355677777777766555444
No 76
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.91 E-value=27 Score=32.64 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.1
Q ss_pred ccHHHHHHH
Q 009466 19 HCDGCKHKV 27 (534)
Q Consensus 19 ~C~sC~~kI 27 (534)
.|.+|..|.
T Consensus 11 ~Cp~cg~kF 19 (129)
T TIGR02300 11 ICPNTGSKF 19 (129)
T ss_pred cCCCcCccc
Confidence 355554433
No 77
>PHA03283 envelope glycoprotein E; Provisional
Probab=35.85 E-value=23 Score=39.91 Aligned_cols=12 Identities=25% Similarity=0.133 Sum_probs=5.8
Q ss_pred ccccccCCCCCC
Q 009466 178 NQKAVKFNIPDD 189 (534)
Q Consensus 178 ~~k~~k~~~~~~ 189 (534)
+=.+++-++++|
T Consensus 442 vytslptn~~~~ 453 (542)
T PHA03283 442 VYTSVPSNDPEV 453 (542)
T ss_pred ceeccCCCCCcc
Confidence 334555555433
No 78
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=35.21 E-value=37 Score=39.07 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=19.0
Q ss_pred EEEE-eccHHH----------HHHHHHHHhcCCCeeE
Q 009466 14 LKVN-IHCDGC----------KHKVKKILQKIDGVFT 39 (534)
Q Consensus 14 LkV~-M~C~sC----------~~kIekaL~kI~GV~s 39 (534)
.+.+ ++|++| ..+|+++...|+||.-
T Consensus 514 sKTEyISCPsCGRTLfDLq~tta~Ik~~t~HLkGlkI 550 (611)
T PRK02048 514 SKTEYISCPGCGRTLYDLQSTIARIKEATSHLKGLKI 550 (611)
T ss_pred ccceEEECCCCCcchhhHHHHHHHHHHHhCCCCCceE
Confidence 3455 899999 4567778888888643
No 79
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=35.03 E-value=31 Score=38.68 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=4.1
Q ss_pred CHHHHHHHHH
Q 009466 56 DPSVLIKKLA 65 (534)
Q Consensus 56 ~peeIieaIe 65 (534)
-|+..|..|.
T Consensus 79 YPelqitnV~ 88 (615)
T KOG3540|consen 79 YPELQITNVV 88 (615)
T ss_pred ChHHHHHHHH
Confidence 3344444443
No 80
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=34.84 E-value=83 Score=30.04 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=46.4
Q ss_pred EEEEEEE----eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec-------CCHHHHHHHHHhcCCceEEcCccc
Q 009466 11 TYVLKVN----IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN-------VDPSVLIKKLAKSGKHAELWGAQK 78 (534)
Q Consensus 11 tv~LkV~----M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~-------v~peeIieaIekaG~~A~l~~~~~ 78 (534)
+++++.+ +.-......|++++-+-.+|..+.++..++.|+|... ..-..+.+...++|+...+....+
T Consensus 38 RIvvR~dps~l~~~e~A~~~I~~ivP~ea~i~di~Fd~~tGEV~IeaeKPG~ViGk~g~~~reI~~~tgW~p~vvRtpP 116 (145)
T cd02410 38 RIVIRPDPSVLKPPEEAIKIILEIVPEEAGITDIYFDDDTGEVIIEAEKPGLVIGKGGSTLREITRETGWAPKVVRTPP 116 (145)
T ss_pred eEEEcCChhhcCCHHHHHHHHHHhCCCccCceeeEecCCCcEEEEEEcCCeEEEecCchhHHHHHHHhCCeeEEEecCC
Confidence 4555544 2235556677777766679999999999999998743 233334556668999888766543
No 81
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=34.76 E-value=25 Score=32.76 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=4.3
Q ss_pred CHHHHHHHHH
Q 009466 56 DPSVLIKKLA 65 (534)
Q Consensus 56 ~peeIieaIe 65 (534)
...+|+..|.
T Consensus 21 ~f~dL~~ev~ 30 (129)
T PRK02363 21 SFYDLVNEIQ 30 (129)
T ss_pred cHHHHHHHHH
Confidence 3444444443
No 82
>PRK14440 acylphosphatase; Provisional
Probab=34.69 E-value=1.7e+02 Score=25.32 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=36.5
Q ss_pred eEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHh
Q 009466 10 QTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (534)
Q Consensus 10 qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIek 66 (534)
.++.|.|. +.+-.....|.+...++ ++.-+.-|+..++|+|... ...+++++.|++
T Consensus 3 ~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 3 KRMYARVYGLVQGVGFRKFVQIHAIRL-GIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred EEEEEEEEEeEeccCchHHHHHHHHHc-CCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 46677777 56666666666665554 4666667788887877633 345666677764
No 83
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=34.60 E-value=2.2e+02 Score=24.99 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=38.5
Q ss_pred ceEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhc
Q 009466 9 IQTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKS 67 (534)
Q Consensus 9 ~qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIeka 67 (534)
+.++++.|. +-|-.-...+++...++ +|.-+.-|+..++|+|... ...+++++.|++-
T Consensus 3 ~~~~~~~V~GrVQGVGFR~~~~~~A~~l-gl~G~V~N~~DGsVeiva~G~~~~v~~~~~~l~~g 65 (92)
T COG1254 3 MVRARARVYGRVQGVGFRYFTRSEALRL-GLTGWVKNLDDGSVEIVAEGPDEAVEKFIEWLRKG 65 (92)
T ss_pred cEEEEEEEEEEeccccHHHHHHHHHHHC-CCEEEEEECCCCeEEEEEEcCHHHHHHHHHHHHhC
Confidence 466777787 66655555555555554 5877888899999988743 3355566666644
No 84
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.34 E-value=46 Score=39.53 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=4.1
Q ss_pred CCCCccCCC
Q 009466 421 SVPAVQGLP 429 (534)
Q Consensus 421 ~~pa~~glp 429 (534)
+||..-++|
T Consensus 526 ~iP~PP~~p 534 (1102)
T KOG1924|consen 526 GIPPPPPLP 534 (1102)
T ss_pred CCCCCCCCC
Confidence 444444444
No 85
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.86 E-value=1e+02 Score=24.28 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=22.6
Q ss_pred EEEEEEEeccHH-HHHHHHHHHhcCCCeeEEEE
Q 009466 11 TYVLKVNIHCDG-CKHKVKKILQKIDGVFTTSI 42 (534)
Q Consensus 11 tv~LkV~M~C~s-C~~kIekaL~kI~GV~sv~V 42 (534)
++.|.|+..-.. ....|-+.|+++++|.+|++
T Consensus 42 ~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 42 NVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 344555534343 77788889999999998875
No 86
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=33.32 E-value=32 Score=29.62 Aligned_cols=35 Identities=11% Similarity=0.314 Sum_probs=22.9
Q ss_pred EEEEEEEe---ccHHH---HHHHHHHHhcCCCeeEEEEecC
Q 009466 11 TYVLKVNI---HCDGC---KHKVKKILQKIDGVFTTSIDSE 45 (534)
Q Consensus 11 tv~LkV~M---~C~sC---~~kIekaL~kI~GV~sv~Vnl~ 45 (534)
++.+.|.+ .|..+ ...|+.+|..+++|.+++|++.
T Consensus 38 ~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 38 HVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred eEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 34444443 44433 3457888889999998888754
No 87
>PRK14444 acylphosphatase; Provisional
Probab=31.97 E-value=2.5e+02 Score=24.29 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=36.0
Q ss_pred ceEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEE
Q 009466 9 IQTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 9 ~qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l 73 (534)
+.++.+.|. +..-.....+.+...++ ++.-..-|+..++|+|... ...+++++.|++.-..|.+
T Consensus 3 m~~~~i~v~G~VQGVGFR~~v~~~A~~l-gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V 71 (92)
T PRK14444 3 MVRAHVFISGRVQGVNFRAYTRDRAREA-GVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYSGPSHARV 71 (92)
T ss_pred cEEEEEEEEEeeCCcCcHHHHHHHHHHh-CCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHhCCCCcEE
Confidence 446666676 44444444444444433 5555667788887776532 3456677777643333433
No 88
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.67 E-value=3.1e+02 Score=22.91 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=36.9
Q ss_pred EEEEEe-ccHHHHHHHHHHHhcCCCeeEEEEec---CCCeEEEE-ec----CCHHHHHHHHHhcCCceEEcCc
Q 009466 13 VLKVNI-HCDGCKHKVKKILQKIDGVFTTSIDS---EQGKVTVS-GN----VDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 13 ~LkV~M-~C~sC~~kIekaL~kI~GV~sv~Vnl---~~gkVtV~-g~----v~peeIieaIekaG~~A~l~~~ 76 (534)
+|+|.+ .-+.-..++-.+|. -..|..+.... ...++.|. .. ...++|+++|++.||.+.....
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~-~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~ 74 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG-PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLSD 74 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC-CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCC
Confidence 456663 44555556666666 23455555544 23334432 22 2367889999999998876543
No 89
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=30.97 E-value=34 Score=38.71 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHhcCCc
Q 009466 55 VDPSVLIKKLAKSGKH 70 (534)
Q Consensus 55 v~peeIieaIekaG~~ 70 (534)
++...+++.|..+.+.
T Consensus 77 FDvRAhLdhi~~vd~t 92 (653)
T KOG2548|consen 77 FDVRAHLDHIPEVDST 92 (653)
T ss_pred hhhHhhhccCCccCCC
Confidence 3444455555544443
No 90
>PRK07334 threonine dehydratase; Provisional
Probab=30.79 E-value=1.6e+02 Score=31.86 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=40.0
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCC-eeEEEEecC-----CCeEEEE--e----cCCHHHHHHHHHhcCCceEEc
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDG-VFTTSIDSE-----QGKVTVS--G----NVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~G-V~sv~Vnl~-----~gkVtV~--g----~v~peeIieaIekaG~~A~l~ 74 (534)
+++|+|. ..-..-...|.++|.+..- |.++++... ..+++|+ - ....+.|++.|++.||.+.++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~g~~~~~~ 402 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAAGFEARLV 402 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHcCCeeEeC
Confidence 4667777 5556667778778765532 455554322 3443332 1 134567899999999998875
No 91
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=30.47 E-value=1.6e+02 Score=25.87 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=31.5
Q ss_pred EEEEEEE-eccHHHHHHHHH---HHhcC--CCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 11 TYVLKVN-IHCDGCKHKVKK---ILQKI--DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIek---aL~kI--~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
.++|.+- .+|..|...+.. ..++. .+|.-+.|+... ...+.+++++.+.+++.++...+..
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPE----FAFERDLANVKSAVLRYGITYPVAN 91 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCc----cccccCHHHHHHHHHHcCCCCCEEE
Confidence 4445555 899999865533 22222 234333332210 0112357778888887776544443
No 92
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=30.22 E-value=30 Score=40.81 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=4.1
Q ss_pred cccccccccc
Q 009466 87 PNQFKNMQLD 96 (534)
Q Consensus 87 ~~q~k~l~i~ 96 (534)
++.|.-++|.
T Consensus 798 lKnfDmvfIf 807 (960)
T KOG1189|consen 798 LKNFDMVFIF 807 (960)
T ss_pred cccceEEEEe
Confidence 3344444444
No 93
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=29.18 E-value=33 Score=40.32 Aligned_cols=6 Identities=17% Similarity=-0.025 Sum_probs=2.5
Q ss_pred CCceEE
Q 009466 68 GKHAEL 73 (534)
Q Consensus 68 G~~A~l 73 (534)
+.++.|
T Consensus 201 gpDVVL 206 (763)
T TIGR00993 201 PPDIVL 206 (763)
T ss_pred CCCEEE
Confidence 344444
No 94
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=29.15 E-value=1.2e+02 Score=26.18 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhc
Q 009466 25 HKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKS 67 (534)
Q Consensus 25 ~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIeka 67 (534)
.-+-+.|-.|+||.+|-+.. .-|+|+ ..+++++|...|..+
T Consensus 37 spLA~~Lf~i~gV~~Vf~~~--dfItVtK~~~~~W~~l~~~I~~~ 79 (87)
T PF08712_consen 37 SPLAQALFAIPGVKSVFIGD--DFITVTKNPDADWEDLKPEIREV 79 (87)
T ss_dssp -HHHHHHHTSTTEEEEEEET--TEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CHHHHHhcCCCCEeEEEEEC--CEEEEeeCCCCCHHHHHHHHHHH
Confidence 44555666999999877654 456666 458999998888653
No 95
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.86 E-value=2.2e+02 Score=22.20 Aligned_cols=58 Identities=21% Similarity=0.122 Sum_probs=31.8
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCCC-eeEEEEecC----CCeEEEEe--cCCHHHHHHHHHhcCCc
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKIDG-VFTTSIDSE----QGKVTVSG--NVDPSVLIKKLAKSGKH 70 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~G-V~sv~Vnl~----~gkVtV~g--~v~peeIieaIekaG~~ 70 (534)
.|+|. -.-+....+|.+.|.+..- |..+.+... ...++|+. ..+.+++++.|++.||.
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~~G~~ 68 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKEAGYE 68 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHHcCCc
Confidence 34454 2345566677777765432 333332221 22333332 23568899999999985
No 96
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=28.64 E-value=1.4e+02 Score=24.08 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=37.3
Q ss_pred EEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEcC
Q 009466 14 LKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 14 LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~~ 75 (534)
|.+. +.|+.=+-+++++|+++.- ..+++|. ...+.++|.+-+++.|+......
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 3444 7899999999999998742 2223333 23567888899999999877443
No 97
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.49 E-value=1.2e+02 Score=24.06 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=34.0
Q ss_pred EEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEc
Q 009466 15 KVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 15 kV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~ 74 (534)
.+. +.|+.-.-+++++| ++.. .+.++|. ...+.+.|.+-+++.||.++..
T Consensus 3 D~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~ 55 (67)
T cd03421 3 DARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGYEVSVE 55 (67)
T ss_pred ccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCCEEEEE
Confidence 344 78999999999999 5422 1223332 2346678888999999988543
No 98
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.01 E-value=38 Score=31.02 Aligned_cols=19 Identities=11% Similarity=-0.032 Sum_probs=10.1
Q ss_pred ceEEEEEEE---eccHHHHHHH
Q 009466 9 IQTYVLKVN---IHCDGCKHKV 27 (534)
Q Consensus 9 ~qtv~LkV~---M~C~sC~~kI 27 (534)
+.+..|.++ +.|+.|-.+.
T Consensus 15 tg~KFYDLNrdPiVsPytG~s~ 36 (129)
T COG4530 15 TGKKFYDLNRDPIVSPYTGKSY 36 (129)
T ss_pred ccchhhccCCCccccCcccccc
Confidence 334445555 5666665544
No 99
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=27.93 E-value=43 Score=38.37 Aligned_cols=6 Identities=33% Similarity=0.446 Sum_probs=2.8
Q ss_pred HHHHHH
Q 009466 141 QQQLQH 146 (534)
Q Consensus 141 ~qq~qq 146 (534)
+||+|+
T Consensus 94 ~qEvq~ 99 (727)
T PF05642_consen 94 SQEVQP 99 (727)
T ss_pred hhhcch
Confidence 444544
No 100
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.64 E-value=31 Score=31.64 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 009466 25 HKVKKILQ 32 (534)
Q Consensus 25 ~kIekaL~ 32 (534)
..|+..|+
T Consensus 13 ~IIe~LL~ 20 (135)
T COG3076 13 LIIEELLE 20 (135)
T ss_pred HHHHHHHh
Confidence 34444443
No 101
>PRK14426 acylphosphatase; Provisional
Probab=27.47 E-value=2.8e+02 Score=23.94 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=35.4
Q ss_pred eEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHh
Q 009466 10 QTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (534)
Q Consensus 10 qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIek 66 (534)
.++.+.|. +..-.....|.+...++ +|.-+.-|+..++|+|... ...+++++.|++
T Consensus 4 ~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 4 VCIIAWVYGRVQGVGFRYHTQHEALKL-GLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred EEEEEEEEEeeCCcCchHHHHHHHHHh-CCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 45566777 56666666666555544 6666677888888877643 345556666654
No 102
>PF10628 CotE: Outer spore coat protein E (CotE); InterPro: IPR018901 CotE is a morphogenic protein that is required for the assembly of the outer coat of the endospore [] and spore resistance to lysozyme []. CotE also regulates the expression of cotA, cotB, cotC and other genes encoding spore outer coat proteins []. The timing of cotE expression has been shown in Bacillus subtilis to affect spore coat morphology but not lysozyme resistance [].
Probab=27.44 E-value=34 Score=33.67 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 009466 187 PDDDEDLSDFDDDEFDYDEYDDEYDDDLDEPL 218 (534)
Q Consensus 187 ~~~ddd~dd~~ddd~dddd~ddd~dd~~d~~~ 218 (534)
++..+||+|+.|.|++|++++|=+.|-..++.
T Consensus 149 ~~~~~dd~~~~d~~~~d~e~e~l~p~~l~~~~ 180 (182)
T PF10628_consen 149 PEGCEDDDDEWDFEIEDEEFEDLDPDFLDDEE 180 (182)
T ss_pred CCCCcccchhcccccccchhhhcChhhhcCcc
No 103
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.17 E-value=1.7e+02 Score=22.96 Aligned_cols=49 Identities=16% Similarity=0.037 Sum_probs=34.6
Q ss_pred eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe--cCCHHHHHHHHHhcCCceEEcC
Q 009466 18 IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 18 M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g--~v~peeIieaIekaG~~A~l~~ 75 (534)
+.|+.=.-++.++|++++. ...++|.. ..+...|.+.++..||.+..+.
T Consensus 7 ~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 7 LPCPLPVLKTKKALEKLKS---------GEVLEVLLDDPGAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred CcCCHHHHHHHHHHhcCCC---------CCEEEEEecCCcHHHHHHHHHHHcCCEEEEEE
Confidence 6798888889999887642 22333332 2467889999999999865543
No 104
>PRK11670 antiporter inner membrane protein; Provisional
Probab=27.09 E-value=1.4e+02 Score=32.23 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCeeEEEEecCC------------------CeEEEE------e-cCCHHHHHHHHHhcCCceEEcCccc
Q 009466 24 KHKVKKILQKIDGVFTTSIDSEQ------------------GKVTVS------G-NVDPSVLIKKLAKSGKHAELWGAQK 78 (534)
Q Consensus 24 ~~kIekaL~kI~GV~sv~Vnl~~------------------gkVtV~------g-~v~peeIieaIekaG~~A~l~~~~~ 78 (534)
...|+.+|+.+++|.+++|.+.. ..++|. + ++....|..++.+.|+++.++....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~ 146 (369)
T PRK11670 67 KEQCSAELLRITGAKAIDWKLSHNIATLKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADI 146 (369)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeehhhhccccccccCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 45688999999998877654332 122233 1 1344557778889999988877643
No 105
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=26.49 E-value=48 Score=31.22 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHhcCCCeeEEEEecCCCeEE-EEecCCHHHHHHHHHh
Q 009466 19 HCDGCKHKVKKILQKIDGVFTTSIDSEQGKVT-VSGNVDPSVLIKKLAK 66 (534)
Q Consensus 19 ~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVt-V~g~v~peeIieaIek 66 (534)
+|.+.-..++++|..|+.+..|+.+...++.+ -.+..++++|+..|..
T Consensus 92 ~~~as~~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~GqrdldrIa~~i~~ 140 (143)
T KOG3411|consen 92 FCDASGGIARKVLQALEKMGIVEKHPKGGRRLTEQGQRDLDRIAGQIRE 140 (143)
T ss_pred hhccccHHHHHHHHHHHhCCceeeCCCCcceeCcccchhHHHHHHHHHh
Confidence 45444444444455555555555555554433 3366788888887764
No 106
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=1.7e+02 Score=28.82 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCe
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK 48 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gk 48 (534)
..|-+=+|+.+.+++||.++++-.+.+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~ 40 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGH 40 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCC
Confidence 6677778889999999999988776664
No 107
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=26.32 E-value=53 Score=37.76 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=18.4
Q ss_pred EEEE-eccHHH----------HHHHHHHHhcCCCee
Q 009466 14 LKVN-IHCDGC----------KHKVKKILQKIDGVF 38 (534)
Q Consensus 14 LkV~-M~C~sC----------~~kIekaL~kI~GV~ 38 (534)
.+.+ ++|++| ..+|++....++||.
T Consensus 506 sKte~isCP~CgRtlfdlq~t~~~i~~~t~Hl~g~k 541 (606)
T PRK00694 506 VKTEYISCPGCGRTLFDLLEVTQRIRERTQHLPGLK 541 (606)
T ss_pred ccceEEECCCCCceeehHHHHHHHHHHHhccCCCce
Confidence 3455 899999 567777777788764
No 108
>PRK14441 acylphosphatase; Provisional
Probab=26.26 E-value=4e+02 Score=23.08 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=33.7
Q ss_pred cceEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ec-CCHHHHHHHHHh
Q 009466 8 KIQTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GN-VDPSVLIKKLAK 66 (534)
Q Consensus 8 ~~qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~-v~peeIieaIek 66 (534)
.+.++.|.|. +.--.....+.+...+ -++.-+.-|...++|+|. ++ ...+++++.|++
T Consensus 3 ~~~~~~i~v~G~VQGVGFR~~v~~~A~~-lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 3 DRVRARIVVSGRVQGVAFRQSAADEARR-LGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred ccEEEEEEEEEecCCccchHHHHHHHhh-cCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 4566777777 3323333344433333 366666678888878765 32 355667777764
No 109
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=26.20 E-value=1.5e+02 Score=28.52 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCeEEEE
Q 009466 22 GCKHKVKKILQKIDGVFTTSIDSEQGKVTVS 52 (534)
Q Consensus 22 sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~ 52 (534)
.-+.+|.+.+.++++|.++.+-.....+.|-
T Consensus 54 ~~A~~Ia~~v~~v~~V~dA~vvVtg~~A~Vg 84 (158)
T TIGR02898 54 DVADEIASEAAKVKGVKDATVVITGNYAYVG 84 (158)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECCEEEEE
Confidence 6788999999999999999998888887775
No 110
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.07 E-value=80 Score=37.63 Aligned_cols=7 Identities=43% Similarity=0.947 Sum_probs=2.8
Q ss_pred CCccCCC
Q 009466 423 PAVQGLP 429 (534)
Q Consensus 423 pa~~glp 429 (534)
|+-.+.|
T Consensus 522 ~~~~~iP 528 (1102)
T KOG1924|consen 522 PIDGGIP 528 (1102)
T ss_pred CCCCCCC
Confidence 3334444
No 111
>PRK14448 acylphosphatase; Provisional
Probab=26.06 E-value=3.8e+02 Score=23.06 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=33.4
Q ss_pred eEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHh
Q 009466 10 QTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (534)
Q Consensus 10 qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIek 66 (534)
.+++|.|. +.+-.=...|.....++ +|.-+.-|+..++|+|... ...+++++.|++
T Consensus 2 ~~~~~~v~G~VQGVGFR~~v~~~A~~l-gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 2 LKKQFIVYGHVQGVGFRYFTWQEATKI-GIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred eEEEEEEEEeecCcchHHHHHHHHHHh-CCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 35566776 45544444444444333 5666667888888877633 345666777764
No 112
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=25.91 E-value=36 Score=38.58 Aligned_cols=10 Identities=30% Similarity=0.415 Sum_probs=3.9
Q ss_pred HHHHHHhhhc
Q 009466 143 QLQHLQQIKG 152 (534)
Q Consensus 143 q~qq~qqmkg 152 (534)
.|-++-.-|+
T Consensus 418 ~L~~fl~sK~ 427 (615)
T KOG0526|consen 418 KLFDFLNSKG 427 (615)
T ss_pred HHHHHHhhcC
Confidence 3444333333
No 113
>PRK14429 acylphosphatase; Provisional
Probab=25.91 E-value=3.5e+02 Score=23.21 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=32.7
Q ss_pred EEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHh
Q 009466 11 TYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (534)
Q Consensus 11 tv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIek 66 (534)
+++|.|. +.+-.....|.+...++ ++.-..-|+..++|+|... ...+++++.|++
T Consensus 3 ~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 3 RVLIKLTGKVQGVGCRRATLTKARAL-GVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred EEEEEEEEeecCeeeHHHHHHHHHHh-CCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 4556666 44444444444443333 5666667889888887633 345666777764
No 114
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.72 E-value=59 Score=37.12 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHhcCCCeeEEEEecCCCeEE--EEecCCHHHHHHHHHhcCCceEEcCccc
Q 009466 19 HCDGCKHKVKKILQKIDGVFTTSIDSEQGKVT--VSGNVDPSVLIKKLAKSGKHAELWGAQK 78 (534)
Q Consensus 19 ~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVt--V~g~v~peeIieaIekaG~~A~l~~~~~ 78 (534)
.|.+-..|+.+.|+.|.... ..++|+ |+..++.++|.+.|.--+|.+.++....
T Consensus 447 V~~s~~~Kl~wl~~~L~~f~------S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdk 502 (731)
T KOG0339|consen 447 VCPSEEKKLNWLLRHLVEFS------SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDK 502 (731)
T ss_pred eccCcHHHHHHHHHHhhhhc------cCCcEEEEEeccCCHHHHHHHhccccceeeeecCch
Confidence 37778888888888875542 223333 4456889999999988899888776543
No 115
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.40 E-value=2.4e+02 Score=22.39 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=34.0
Q ss_pred EEEE-eccHHHHHHHHHHHhcCCC-eeEEEEecC-----CCeEEEEecC-C---HHHHHHHHHhcCCceEEc
Q 009466 14 LKVN-IHCDGCKHKVKKILQKIDG-VFTTSIDSE-----QGKVTVSGNV-D---PSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 14 LkV~-M~C~sC~~kIekaL~kI~G-V~sv~Vnl~-----~gkVtV~g~v-~---peeIieaIekaG~~A~l~ 74 (534)
|.|. -.++.-..+|..+|.+... |.++.+... ...++|+-.+ . .++|+++|++. |+.+.|
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~-~~~~~~ 72 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAK-FTVVYW 72 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCc-ccEEeC
Confidence 3444 4567777788888877644 444433322 2233443221 2 35888888777 876653
No 116
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=24.80 E-value=1.2e+02 Score=26.56 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=28.8
Q ss_pred EEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE---ecCCHHHHHHHHHhcCCceE
Q 009466 14 LKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS---GNVDPSVLIKKLAKSGKHAE 72 (534)
Q Consensus 14 LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~---g~v~peeIieaIekaG~~A~ 72 (534)
|++. ++-+. +..+.=.|++.+.|++|.+|--.....|. ..++.++|++.+++....+.
T Consensus 3 lkfg~It~ee-A~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 3 LKFGNITPEE-AMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVI 64 (88)
T ss_dssp EE--S-TTTT-THHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS
T ss_pred cccCCCCHHH-HHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhhe
Confidence 4444 44333 33566678999999999999777666654 34789999999999887644
No 117
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=24.74 E-value=94 Score=28.30 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=23.1
Q ss_pred EEEEEEeccHHH------HHHHHHHHhcCCCeeEEEEec
Q 009466 12 YVLKVNIHCDGC------KHKVKKILQKIDGVFTTSIDS 44 (534)
Q Consensus 12 v~LkV~M~C~sC------~~kIekaL~kI~GV~sv~Vnl 44 (534)
+.+++.++...| ...|+.+|+.+++|..++|++
T Consensus 51 v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V~l 89 (111)
T COG2151 51 VKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEVEL 89 (111)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEEEE
Confidence 344444444444 678899999999998887753
No 118
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=24.73 E-value=3.5e+02 Score=21.96 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=29.5
Q ss_pred EEEEecc-HHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHH
Q 009466 14 LKVNIHC-DGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVL 60 (534)
Q Consensus 14 LkV~M~C-~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeI 60 (534)
++|+++| ..+..+|...|.+..|.........+..+.|+..+..+++
T Consensus 4 ~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~ 51 (79)
T cd01514 4 MKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEM 51 (79)
T ss_pred EEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHH
Confidence 4455445 5677788888888877543333334466777776655554
No 119
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=24.57 E-value=1.8e+02 Score=23.52 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=31.5
Q ss_pred EEEEE-eccHHHHHHHHHHHhcC------------------CCeeEEEEecCCCeEEEEec-CCHHHHHHHHHhc
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKI------------------DGVFTTSIDSEQGKVTVSGN-VDPSVLIKKLAKS 67 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI------------------~GV~sv~Vnl~~gkVtV~g~-v~peeIieaIeka 67 (534)
+|+|. ..-..-+..|+..+... ..+ ++.++..+.+++|++. ...+.|.+.|+++
T Consensus 3 v~~L~~~~A~~v~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~d~~tNsliv~g~~~~~~~i~~li~~L 76 (82)
T PF03958_consen 3 VYPLKYASAEEVASVLQQLLGGGSGSSSGSGGSSGSGSSGSSSG-RIVADERTNSLIVRGTPEDLEQIRELIKQL 76 (82)
T ss_dssp EEE-SSS-HHHHHHHHHHHH----------------S-HHHTTT-EEEEECTTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHhhhhcccccccccccccccCCCCCe-EEEEECCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 45555 55555666666666321 233 7888889999999854 4455555555543
No 120
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=24.51 E-value=44 Score=37.38 Aligned_cols=50 Identities=30% Similarity=0.366 Sum_probs=35.5
Q ss_pred eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceE
Q 009466 18 IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAE 72 (534)
Q Consensus 18 M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~ 72 (534)
|.|..-. ---|..+.-| ++++.+..+|+|.+-++.+.|+++|++.|+...
T Consensus 88 l~ctdg~---lisl~~lnkV--v~~dpe~~tvTV~aGirlrQLie~~~~~GlsL~ 137 (518)
T KOG4730|consen 88 LVCTDGL---LISLDKLNKV--VEFDPELKTVTVQAGIRLRQLIEELAKLGLSLP 137 (518)
T ss_pred ceecccc---EEEhhhhccc--eeeCchhceEEeccCcCHHHHHHHHHhcCcccc
Confidence 6676652 2223334445 445778888899888999999999999998643
No 121
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=24.31 E-value=2e+02 Score=23.31 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=23.5
Q ss_pred ceEEEEEEEeccHHHHHHHHHHHhcCCCeeEEE
Q 009466 9 IQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTS 41 (534)
Q Consensus 9 ~qtv~LkV~M~C~sC~~kIekaL~kI~GV~sv~ 41 (534)
..+++|.|++.-..-...|-+.|+++++|.+|+
T Consensus 47 ~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 47 TARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 345666666555555667888899999998764
No 122
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=24.03 E-value=2e+02 Score=25.57 Aligned_cols=54 Identities=22% Similarity=0.403 Sum_probs=29.8
Q ss_pred eEEEEEEE-e-ccHHHHHHHHHHHhcC------CCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEc
Q 009466 10 QTYVLKVN-I-HCDGCKHKVKKILQKI------DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 10 qtv~LkV~-M-~C~sC~~kIekaL~kI------~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~ 74 (534)
..+++.+- - +|..|...+. .|.++ .+|.-+.| ....+.. +.+.+++.++...+.
T Consensus 29 k~~vv~f~~~~~Cp~C~~~~p-~l~~l~~~~~~~~v~~v~v---------~~~~~~~-~~~~~~~~~~~~~~~ 90 (146)
T PF08534_consen 29 KPVVVNFWASAWCPPCRKELP-YLNELQEKYKDKGVDVVGV---------SSDDDPP-VREFLKKYGINFPVL 90 (146)
T ss_dssp SEEEEEEESTTTSHHHHHHHH-HHHHHHHHHHTTTCEEEEE---------EESSSHH-HHHHHHHTTTTSEEE
T ss_pred CeEEEEEEccCCCCcchhhhh-hHHhhhhhhccCceEEEEe---------cccCCHH-HHHHHHhhCCCceEE
Confidence 34455555 5 8999987775 33333 34443333 2222333 777777776655543
No 123
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=23.81 E-value=2.3e+02 Score=26.89 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCe
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK 48 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gk 48 (534)
..|-.-+|..+.+++||.+++|-...+.
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~ 34 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGY 34 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCC
Confidence 5788888999999999999988766553
No 124
>PF10991 DUF2815: Protein of unknown function (DUF2815); InterPro: IPR022595 This entry is represented by Bacteriophage APSE-1, protein 50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.62 E-value=31 Score=33.91 Aligned_cols=8 Identities=0% Similarity=0.164 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 009466 58 SVLIKKLA 65 (534)
Q Consensus 58 eeIieaIe 65 (534)
+.|.++|+
T Consensus 45 ~~I~~Ai~ 52 (181)
T PF10991_consen 45 AAIKAAIE 52 (181)
T ss_pred HHHHHHHH
Confidence 34444444
No 125
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=23.36 E-value=2.1e+02 Score=24.10 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=35.9
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe--cCCHHHHHHHHHhcC-CceE
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSG-KHAE 72 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g--~v~peeIieaIekaG-~~A~ 72 (534)
..+|.+. ..|+.=+-.++++|++++- .+.++|.. ..+.++|..-+++.+ +...
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~~---------Ge~LeV~~ddp~~~~dIp~~~~~~~~~~ll 61 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLKP---------GEILEVIADDPAAKEDIPAWAKKEGGHELL 61 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCCC---------CCEEEEEecCcchHHHHHHHHHHcCCcEEE
Confidence 5577888 9999999999999998843 23333432 245677777777555 4433
No 126
>PRK14424 acylphosphatase; Provisional
Probab=23.26 E-value=4.3e+02 Score=23.13 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=35.7
Q ss_pred ceEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEE
Q 009466 9 IQTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 9 ~qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l 73 (534)
+.+++|.|. +.+-.-...|.+...++ +|.-+.-|+..++|+|... ...+++++.|+..-..+.+
T Consensus 6 m~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~gp~~a~V 74 (94)
T PRK14424 6 IETYYVRVRGVVQGVGFRHATVREAHAL-GLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRHGPPAARV 74 (94)
T ss_pred cEEEEEEEEEeecCCchHHHHHHHHHHc-CCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHhCCCCcEE
Confidence 457777777 44433344444333333 5555556888887776532 3456677777643333333
No 127
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=23.22 E-value=62 Score=33.92 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=5.9
Q ss_pred HHHHHHHhcCCCe
Q 009466 25 HKVKKILQKIDGV 37 (534)
Q Consensus 25 ~kIekaL~kI~GV 37 (534)
..+.+.|++|+-|
T Consensus 115 ~~~~k~~~alek~ 127 (288)
T PF09184_consen 115 KTLDKFLRALEKV 127 (288)
T ss_pred ccHHHHHHHHhee
Confidence 3444444444443
No 128
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.10 E-value=64 Score=37.89 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEE-eccHHH----------HHHHHHHHhcCCCee
Q 009466 14 LKVN-IHCDGC----------KHKVKKILQKIDGVF 38 (534)
Q Consensus 14 LkV~-M~C~sC----------~~kIekaL~kI~GV~ 38 (534)
++.+ ++|++| ..+|++....++||.
T Consensus 630 ~kte~isCPgCGRT~~dlq~~~~~I~~~~~hl~Gvk 665 (733)
T PLN02925 630 TKTEYVSCPSCGRTLFDLQEVSAEIREKTSHLPGVS 665 (733)
T ss_pred cCCeEEECCCCCCccccHHHHHHHHHHHhhcCCCce
Confidence 4455 899999 567788888889873
No 129
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=23.01 E-value=74 Score=28.27 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.5
Q ss_pred HHhhhc
Q 009466 147 LQQIKG 152 (534)
Q Consensus 147 ~qqmkg 152 (534)
+.||+.
T Consensus 35 vaqm~e 40 (96)
T PF15387_consen 35 VAQMRE 40 (96)
T ss_pred HHHHHH
Confidence 344443
No 130
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.86 E-value=55 Score=30.62 Aligned_cols=17 Identities=6% Similarity=-0.037 Sum_probs=10.9
Q ss_pred EEEEE---eccHHHHHHHHH
Q 009466 13 VLKVN---IHCDGCKHKVKK 29 (534)
Q Consensus 13 ~LkV~---M~C~sC~~kIek 29 (534)
.|.++ +.|+.|...+..
T Consensus 19 FYDLnk~p~vcP~cg~~~~~ 38 (129)
T TIGR02300 19 FYDLNRRPAVSPYTGEQFPP 38 (129)
T ss_pred ccccCCCCccCCCcCCccCc
Confidence 45555 788888765533
No 131
>PRK14437 acylphosphatase; Provisional
Probab=22.79 E-value=4e+02 Score=24.02 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=33.5
Q ss_pred eEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHh
Q 009466 10 QTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (534)
Q Consensus 10 qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIek 66 (534)
.++.|.|. +..-.....+.+...++ +|.-+.-|+..++|+|... ...+++++.|++
T Consensus 23 ~~~~i~V~G~VQGVGFR~fv~~~A~~l-gL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~~ 83 (109)
T PRK14437 23 TCIHATVSGKVQGVFFRESVRKKAEEL-QLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 83 (109)
T ss_pred EEEEEEEEEecCCcCchHHHHHHHHHh-CCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 45566676 44444444444443333 6667778889888887632 345666777764
No 132
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=22.59 E-value=2.1e+02 Score=25.51 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=35.8
Q ss_pred ecc-HHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE-ecCCHHHHHHHHHhc
Q 009466 18 IHC-DGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS-GNVDPSVLIKKLAKS 67 (534)
Q Consensus 18 M~C-~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~-g~v~peeIieaIeka 67 (534)
++| +.-...|...|..|++++-...+.+ ++++|. ...+.+.|.++|+.+
T Consensus 13 v~~~pe~l~av~~~L~~ip~~EV~~~d~~-GKlVVVie~~~~~~l~~tie~i 63 (94)
T COG3062 13 VQAKPERLSAVKTALLAIPGCEVYGEDAE-GKLVVVIEAEDSETLLETIESI 63 (94)
T ss_pred eecCHHHHHHHHHHHhcCCCcEeeccCCC-ceEEEEEEcCchHHHHHHHHHH
Confidence 344 6667899999999999976666655 667655 345778888888764
No 133
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=22.30 E-value=1.4e+02 Score=34.71 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=47.4
Q ss_pred eEEEEEEE----eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec-------CCHHHHHHHHHhcCCceEEcCcc
Q 009466 10 QTYVLKVN----IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN-------VDPSVLIKKLAKSGKHAELWGAQ 77 (534)
Q Consensus 10 qtv~LkV~----M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~-------v~peeIieaIekaG~~A~l~~~~ 77 (534)
.++++|.+ +.-+....+|++++-+..+|..+.++..++.|.|+.. ..-..+.+...++|....++...
T Consensus 54 ~r~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~v~i~~~~p~~~~~~~~~~~~~i~~~~~w~~~~~~~~ 132 (630)
T TIGR03675 54 KRIVIRPDPSVLLPPEEAIEKIKEIVPEEAGITDIYFDDVTGEVIIEAEKPGLVIGKGGSTLREITAETGWTPKVVRTP 132 (630)
T ss_pred ceEEEecChhhcCCHHHHHHHHHHhCCCcCCceeEEecCCCceEEEEEcCCeEEEecCcchHHHHHHHhCCeeeEEecC
Confidence 35566644 2345666778888877789999999999999998743 13344556667889887775543
No 134
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=22.22 E-value=34 Score=37.08 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCC
Q 009466 186 IPDDDEDLSDFDDDEFDYDEYDDEYDDD 213 (534)
Q Consensus 186 ~~~~ddd~dd~~ddd~dddd~ddd~dd~ 213 (534)
++++.+++|+||.||||.++||-+++|+
T Consensus 94 ee~~i~~~~eddi~D~~~~~d~~~eed~ 121 (449)
T KOG3871|consen 94 EEDEIEEEDEDDIDDFEMEEDDKEEEDE 121 (449)
T ss_pred cccccccchhcccccccccccchhhhhh
No 135
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.83 E-value=1.8e+02 Score=29.75 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=31.7
Q ss_pred eEEEEEEE--eccHHHHHHHHHHHhc---CCCeeEEEEe-----------------cCCCeEEEEecCCHHHHHHHHH
Q 009466 10 QTYVLKVN--IHCDGCKHKVKKILQK---IDGVFTTSID-----------------SEQGKVTVSGNVDPSVLIKKLA 65 (534)
Q Consensus 10 qtv~LkV~--M~C~sC~~kIekaL~k---I~GV~sv~Vn-----------------l~~gkVtV~g~v~peeIieaIe 65 (534)
+.++++|- -+|.+|.... +.|+. +++|..+... +..+++.....+++++|..+|+
T Consensus 9 ~~~~VkI~~HktC~ssy~Lf-~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 9 IEMEVKIFTHKTCVSSYMLF-EYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred hheEEEEEEecchHHHHHHH-HHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 44445555 6899998554 45565 5666555443 2222222223478888877775
No 136
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=21.68 E-value=1.4e+02 Score=27.84 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=23.0
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeE
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFT 39 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~s 39 (534)
+++|-.+ -.|.+|...|+.-...-+.|..
T Consensus 98 ~i~l~te~~pC~SC~~vi~qF~~~~pni~~ 127 (133)
T PF14424_consen 98 TIDLFTELPPCESCSNVIEQFKKDFPNIKV 127 (133)
T ss_pred eEEEEecCCcChhHHHHHHHHHHHCCCcEE
Confidence 5555555 6899999999999998888753
No 137
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=21.66 E-value=1.9e+02 Score=24.43 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=36.3
Q ss_pred eEEEEEEE--e---ccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEcCccc
Q 009466 10 QTYVLKVN--I---HCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELWGAQK 78 (534)
Q Consensus 10 qtv~LkV~--M---~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~~~~~ 78 (534)
..++|++. + ++..+...+...+.. +.+..+.+++..-+. |. +.....++++.+++.+....++...+
T Consensus 12 ~~~vi~~~G~l~~~~~~~~~~~l~~~~~~-~~~~~vvidls~v~~-iDssgl~~L~~~~~~~~~~~~~~~l~~~~~ 85 (108)
T TIGR00377 12 GVVIVRLSGELDAHTAPLLREKVTPAAER-TGPRPIVLDLEDLEF-MDSSGLGVLLGRYKQVRRVGGQLVLVSVSP 85 (108)
T ss_pred CEEEEEEecccccccHHHHHHHHHHHHHh-cCCCeEEEECCCCeE-EccccHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34556666 3 345555555555443 466777777664222 22 22234445555666777777766543
No 138
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=21.62 E-value=70 Score=28.70 Aligned_cols=20 Identities=20% Similarity=0.630 Sum_probs=16.7
Q ss_pred EEE-eccHHHHHHHHHHHhcC
Q 009466 15 KVN-IHCDGCKHKVKKILQKI 34 (534)
Q Consensus 15 kV~-M~C~sC~~kIekaL~kI 34 (534)
++. ..|..|+..|++.|.+.
T Consensus 15 ~f~~~qC~~cA~Al~~~L~~~ 35 (100)
T PF15643_consen 15 RFKIFQCVECASALKQFLKQA 35 (100)
T ss_pred ccCceehHHHHHHHHHHHHHC
Confidence 445 79999999999999853
No 139
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=21.55 E-value=58 Score=37.19 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=19.1
Q ss_pred CHHHHHHHHHhcCCceEEcCccccccccCCCccccccccc
Q 009466 56 DPSVLIKKLAKSGKHAELWGAQKANNNQNNLPNQFKNMQL 95 (534)
Q Consensus 56 ~peeIieaIekaG~~A~l~~~~~~~~~~~~~~~q~k~l~i 95 (534)
+.+..|..|+.||.....++.. ....++.+|+.|+.
T Consensus 291 SvevaI~flkecGakL~~VSpr----~~n~IfErlR~ILh 326 (739)
T KOG2140|consen 291 SVEVAIAFLKECGAKLAEVSPR----ALNGIFERLRYILH 326 (739)
T ss_pred hHHHHHHHHHHHHHHHHHhChH----HHhHHHHHHHHHHh
Confidence 4445566666777654444332 12346666666654
No 140
>smart00362 RRM_2 RNA recognition motif.
Probab=21.48 E-value=3.3e+02 Score=19.79 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=33.6
Q ss_pred EEE-eccHHHHHHHHHHHhcCCCeeEEEEecCC----CeEEEEecCCHHHHHHHHHh
Q 009466 15 KVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQ----GKVTVSGNVDPSVLIKKLAK 66 (534)
Q Consensus 15 kV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~----gkVtV~g~v~peeIieaIek 66 (534)
.|. +.+......|++.|+....|..+.+.... ..+.|+.. +.++..++|+.
T Consensus 3 ~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~-~~~~a~~a~~~ 58 (72)
T smart00362 3 FVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFE-SEEDAEKAIEA 58 (72)
T ss_pred EEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeC-CHHHHHHHHHH
Confidence 355 66666778899999988888888777654 44555533 44555555544
No 141
>PRK14449 acylphosphatase; Provisional
Probab=21.43 E-value=4.4e+02 Score=22.60 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=35.0
Q ss_pred EEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhc
Q 009466 11 TYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKS 67 (534)
Q Consensus 11 tv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIeka 67 (534)
++++.|. +..-.....|.+...++ +|.-..-|+..++|+|... ...+++++.|++-
T Consensus 4 ~~~i~v~G~VQGVGFR~fv~~~A~~l-gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 4 TVHLRITGHVQGVGLRYSVYQKAVSL-GITGYAENLYDGSVEVVAEGDEENIKELINFIKTG 64 (90)
T ss_pred EEEEEEEEeecCcChHHHHHHHHHHc-CCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 5566666 55555566665555544 5666667888888887633 3456666667653
No 142
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=21.22 E-value=3.7e+02 Score=21.85 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=34.0
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCC-eeEEEEecCCCeEEEE--ec---CCHHHHHHHHHh
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDG-VFTTSIDSEQGKVTVS--GN---VDPSVLIKKLAK 66 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~G-V~sv~Vnl~~gkVtV~--g~---v~peeIieaIek 66 (534)
.+.+.|. ..++..+..|.++|.+..+ |..++.....+..+.. -+ .+.++|.++|++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEE 64 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHH
Confidence 4567777 7889999999999998866 5556555555555432 11 244455555544
No 143
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=21.11 E-value=2.8e+02 Score=22.80 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=27.7
Q ss_pred EEEEecc-HHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHH
Q 009466 14 LKVNIHC-DGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVL 60 (534)
Q Consensus 14 LkV~M~C-~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeI 60 (534)
++|++.| ..|..+|-..|.+..|...-........++|+..+..+++
T Consensus 4 ~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~ 51 (79)
T cd03710 4 EELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGL 51 (79)
T ss_pred EEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHH
Confidence 3444333 6677788888888877433222223356777776666555
No 144
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=21.08 E-value=1.7e+02 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=17.3
Q ss_pred eccHHHHHHHHHHHhcC----CCeeEEEEecC
Q 009466 18 IHCDGCKHKVKKILQKI----DGVFTTSIDSE 45 (534)
Q Consensus 18 M~C~sC~~kIekaL~kI----~GV~sv~Vnl~ 45 (534)
-+|..|. ++++.|.++ .+|.-..++..
T Consensus 9 ~~C~~C~-~a~~~L~~l~~~~~~i~~~~idi~ 39 (85)
T PRK11200 9 PGCPYCV-RAKELAEKLSEERDDFDYRYVDIH 39 (85)
T ss_pred CCChhHH-HHHHHHHhhcccccCCcEEEEECC
Confidence 6899998 666777765 45544444433
No 145
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=20.98 E-value=2.8e+02 Score=23.70 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=26.7
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcC-CCeeEEEEecCCCeEEEEec-CCHHHHHHHHHhcCCceEE
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKI-DGVFTTSIDSEQGKVTVSGN-VDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI-~GV~sv~Vnl~~gkVtV~g~-v~peeIieaIekaG~~A~l 73 (534)
.+.|.+- -+|..|...+... .++ +.+ ..+.|..+ .+.+++.+.+++..+...+
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l-~~~~~~~---------~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTV-NQLAADY---------PVVSVALRSGDDGAVARFMQKKGYGFPV 77 (123)
T ss_pred EEEEEEECCcChhhhhhChHH-HHHHhhC---------CEEEEEccCCCHHHHHHHHHHcCCCccE
Confidence 3444444 6899998664333 222 111 12233322 2467777777776654443
No 146
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.94 E-value=69 Score=35.81 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 009466 179 QKAVKFNIPDDDEDLSDFDDDEFDYDEYDDEYDDDLDEPL 218 (534)
Q Consensus 179 ~k~~k~~~~~~ddd~dd~~ddd~dddd~ddd~dd~~d~~~ 218 (534)
..+.+++......++.|.+-|..+||++++|+|||+-+..
T Consensus 135 ~sds~~~~~S~g~~d~d~~s~~~~~de~~~d~dddd~~e~ 174 (483)
T KOG2236|consen 135 DSDSAGSSSSSGKEDLDKDSDKISEDEDDSDFDDDDVKED 174 (483)
T ss_pred ccccccccccccccccccccccccCCcccccccccccccc
No 147
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=20.81 E-value=3.1e+02 Score=23.06 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=38.2
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEc
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~ 74 (534)
.++|.+. +.|+.=.-+++++|++++-- ++++|. ...+.++|..-.++.|++...+
T Consensus 9 ~~~lD~~Gl~CP~Pll~~kk~l~~l~~G---------~~l~V~~dd~~~~~di~~~~~~~G~~~~~~ 66 (81)
T PRK00299 9 DHTLDALGLRCPEPVMMVRKTVRNMQPG---------ETLLIIADDPATTRDIPSFCRFMDHELLAQ 66 (81)
T ss_pred CeEEecCCCCCCHHHHHHHHHHHcCCCC---------CEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 3456666 89999999999999987422 122332 2346777888888999987653
No 148
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=20.59 E-value=3.8e+02 Score=24.10 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=43.3
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEE--EEec-CCHHHHHHHHHhcCCceEEc
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVT--VSGN-VDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVt--V~g~-v~peeIieaIekaG~~A~l~ 74 (534)
+.+|.|.|- .-=..|..+......+.-||.-+.-|...++|. +++. ...+++.+-|+..|..+..+
T Consensus 7 i~s~dfEvfGRVQGv~fr~~t~~~a~~lGlrGWv~Nt~~GtvkG~leGp~~~vd~mk~wl~~~gsP~s~I 76 (98)
T KOG3360|consen 7 IKSCDFEVFGRVQGVCFRKHTLDEAKKLGLRGWVMNTSEGTVKGQLEGPPEKVDEMKEWLLTRGSPVSAI 76 (98)
T ss_pred eEEEeEEEEeeeccchhhHHHHHHHHhhcceEEEEecCCceEEEEEeCCHHHHHHHHHHHHhcCChhHhe
Confidence 445566666 455677777666666667998888888888776 3433 34566777777677654443
No 149
>PRK14450 acylphosphatase; Provisional
Probab=20.48 E-value=5.2e+02 Score=22.16 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=30.6
Q ss_pred EEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCe-EEEE--ec-CCHHHHHHHHHh
Q 009466 11 TYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGK-VTVS--GN-VDPSVLIKKLAK 66 (534)
Q Consensus 11 tv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gk-VtV~--g~-v~peeIieaIek 66 (534)
++.|.|. +..-.....+.+...++ +|.-+.-|+..++ |+|. ++ ...+++++.|++
T Consensus 3 ~~~~~v~G~VQGVGFR~~v~~~A~~~-~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 3 CLKAIVKGKVQGVYFRDFTRTQATRL-GLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred EEEEEEEEEecCcCcHHHHHHHHHHc-CCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 4455666 44444444444443333 5656667777774 7665 32 356677777764
No 150
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.35 E-value=2.7e+02 Score=22.42 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=35.4
Q ss_pred eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEcC
Q 009466 18 IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 18 M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~~ 75 (534)
..|+.=.-+++++|.+++- .++++|. ...+.+.|.+-+++.|+.+....
T Consensus 7 ~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~ 57 (69)
T cd03423 7 LRCPEPVMMLHKKVRKMKP---------GDTLLVLATDPSTTRDIPKFCTFLGHELLAQE 57 (69)
T ss_pred CcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCCchHHHHHHHHHHcCCEEEEEE
Confidence 6899999999999998742 1222332 33577889999999999876543
No 151
>PRK10026 arsenate reductase; Provisional
Probab=20.16 E-value=3.2e+02 Score=25.78 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=29.0
Q ss_pred EEEEEEeccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCC
Q 009466 12 YVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK 69 (534)
Q Consensus 12 v~LkV~M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~ 69 (534)
++|-..-+|.+|...++. |.+ .+|.-..+++. +...+.++|...|++++.
T Consensus 4 i~iY~~p~Cst~RKA~~w-L~~-~gi~~~~~d~~------~~ppt~~eL~~~l~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEM-IRN-SGTEPTIIHYL------ETPPTRDELVKLIADMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHH-HHH-CCCCcEEEeee------CCCcCHHHHHHHHHhCCC
Confidence 343334789999866654 332 24433333322 233577888888888775
No 152
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=20.13 E-value=1.1e+02 Score=28.92 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=31.3
Q ss_pred EEEEEEEeccHHH------HHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCc
Q 009466 11 TYVLKVNIHCDGC------KHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKH 70 (534)
Q Consensus 11 tv~LkV~M~C~sC------~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~ 70 (534)
++++.|.++...| ...|+.+|+.+ ||..|+|++.-.-+.- .+--.++-.++|+..|+.
T Consensus 26 ~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~Wt-~d~it~~gr~~l~~~gia 89 (146)
T TIGR02159 26 GVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSLDPPWT-TDWITEDAREKLREYGIA 89 (146)
T ss_pred EEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEeeCCCCC-hHHCCHHHHHHHHhcCcc
Confidence 4556666555444 34577888876 8877777532221111 111224456677777753
No 153
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=20.12 E-value=2.7e+02 Score=27.83 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=38.9
Q ss_pred EEEEe-ccHHHHHHHHHHHhcC---CC----eeEEEEecCCCeEEEEecCCHHHHHHHHHhcCC-ceEEcC
Q 009466 14 LKVNI-HCDGCKHKVKKILQKI---DG----VFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK-HAELWG 75 (534)
Q Consensus 14 LkV~M-~C~sC~~kIekaL~kI---~G----V~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~-~A~l~~ 75 (534)
.+|.+ |-..-+..|+++++++ ++ |..|+=++-.++|+|++.++-++|++.|+.... +..+++
T Consensus 98 ~~v~ivTG~la~~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP 168 (204)
T PF04459_consen 98 RRVTIVTGVLAYPFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLP 168 (204)
T ss_pred eeEEEEeeHHHHHHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEEC
Confidence 34443 3333444555555555 44 344444577889999999999999999986444 344444
No 154
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=20.02 E-value=4.2e+02 Score=22.74 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=37.4
Q ss_pred EEEEeccHHHHHHHHHHHhcCCC-eeEEEEecCCCeEEEEecCCHHHHHHHHHhcCC
Q 009466 14 LKVNIHCDGCKHKVKKILQKIDG-VFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK 69 (534)
Q Consensus 14 LkV~M~C~sC~~kIekaL~kI~G-V~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~ 69 (534)
=+|+=.-..|...++..|..... -..+.|+..+++|.|.+. ..++|.+-|.+.||
T Consensus 32 rkI~GD~~aL~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~-~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 32 RKIEGDIWALKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGD-HVEEVKKWLLEKGF 87 (87)
T ss_pred EeecCCHHHHHHHHHHHhhhhcCCCcceEEeecCCEEEEcCc-cHHHHHHHHHHCcC
Confidence 33443446667777777765433 236778889999999987 36777777777765
Done!