Query 009466
Match_columns 534
No_of_seqs 277 out of 1594
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwl_A Copper transport protei 99.3 8.6E-12 2.9E-16 98.0 8.7 66 10-76 2-67 (68)
2 1cc8_A Protein (metallochapero 99.2 4.5E-11 1.5E-15 94.4 9.8 67 9-75 4-71 (73)
3 3dxs_X Copper-transporting ATP 99.2 4.6E-11 1.6E-15 94.3 9.5 67 9-75 1-71 (74)
4 4a4j_A Pacszia, cation-transpo 99.2 7.1E-11 2.4E-15 91.7 10.1 65 10-74 2-69 (69)
5 2crl_A Copper chaperone for su 99.2 1.3E-10 4.4E-15 98.7 9.8 71 7-77 16-86 (98)
6 3fry_A Probable copper-exporti 99.1 1.1E-10 3.8E-15 92.7 8.2 66 9-76 4-70 (73)
7 2xmw_A PACS-N, cation-transpor 99.0 1.9E-09 6.4E-14 82.3 10.2 65 10-74 3-70 (71)
8 1mwy_A ZNTA; open-faced beta-s 99.0 2.4E-09 8.1E-14 83.4 10.3 67 9-75 2-70 (73)
9 1aw0_A Menkes copper-transport 99.0 1.6E-09 5.6E-14 83.1 9.2 65 10-74 3-71 (72)
10 1osd_A MERP, hypothetical prot 99.0 1.5E-09 5E-14 83.4 8.9 66 9-74 2-71 (72)
11 2l3m_A Copper-ION-binding prot 99.0 2.5E-09 8.7E-14 82.0 9.8 63 9-71 4-70 (71)
12 2xmm_A SSR2857 protein, ATX1; 99.0 6E-10 2.1E-14 83.4 6.1 60 12-71 3-63 (64)
13 2roe_A Heavy metal binding pro 99.0 8E-10 2.7E-14 84.6 6.8 63 12-74 2-65 (66)
14 3cjk_B Copper-transporting ATP 99.0 3.1E-09 1.1E-13 82.8 10.1 66 10-75 2-71 (75)
15 2k2p_A Uncharacterized protein 99.0 6.9E-10 2.4E-14 91.7 6.2 64 8-71 20-84 (85)
16 1y3j_A Copper-transporting ATP 99.0 1.5E-09 5.3E-14 85.3 7.6 67 9-75 2-72 (77)
17 1q8l_A Copper-transporting ATP 98.9 1.7E-09 5.9E-14 87.3 8.0 69 8-76 7-79 (84)
18 2qif_A Copper chaperone COPZ; 98.9 4.5E-09 1.5E-13 78.7 9.8 62 10-71 2-67 (69)
19 1opz_A Potential copper-transp 98.9 3.6E-09 1.2E-13 81.6 9.2 66 9-74 5-74 (76)
20 2g9o_A Copper-transporting ATP 98.9 3.1E-09 1.1E-13 87.9 9.4 68 10-77 3-77 (90)
21 1kvi_A Copper-transporting ATP 98.9 2.1E-09 7.1E-14 84.7 7.9 68 8-75 6-77 (79)
22 2kt2_A Mercuric reductase; nme 98.9 2.4E-09 8E-14 81.9 7.8 62 13-74 3-67 (69)
23 1yjr_A Copper-transporting ATP 98.9 3.4E-09 1.1E-13 82.0 8.3 67 9-75 3-73 (75)
24 1fvq_A Copper-transporting ATP 98.9 4.2E-09 1.4E-13 80.8 8.7 65 11-75 3-70 (72)
25 1cpz_A Protein (COPZ); copper 98.9 4.4E-09 1.5E-13 79.6 8.2 61 13-73 3-67 (68)
26 1jww_A Potential copper-transp 98.9 6.6E-09 2.2E-13 81.5 9.1 68 9-76 2-73 (80)
27 2ldi_A Zinc-transporting ATPas 98.9 5.4E-09 1.9E-13 79.1 7.8 64 9-72 2-69 (71)
28 1qup_A Superoxide dismutase 1 98.9 4.1E-09 1.4E-13 102.9 8.7 71 10-80 6-76 (222)
29 1yg0_A COP associated protein; 98.9 5.2E-09 1.8E-13 78.7 7.2 61 11-71 2-65 (66)
30 2kkh_A Putative heavy metal tr 98.8 1.3E-08 4.3E-13 84.4 9.7 71 8-78 14-88 (95)
31 2kyz_A Heavy metal binding pro 98.8 4.3E-09 1.5E-13 80.9 5.8 61 12-74 3-64 (67)
32 2ofg_X Zinc-transporting ATPas 98.8 1.3E-08 4.5E-13 87.6 9.2 67 8-74 6-76 (111)
33 2ew9_A Copper-transporting ATP 98.8 1.7E-08 5.9E-13 88.6 8.8 65 10-74 80-148 (149)
34 1jk9_B CCS, copper chaperone f 98.8 9.4E-09 3.2E-13 102.2 7.9 70 10-79 7-76 (249)
35 1p6t_A Potential copper-transp 98.8 1.7E-08 5.9E-13 89.2 8.4 67 10-76 74-144 (151)
36 2rop_A Copper-transporting ATP 98.7 7.1E-08 2.4E-12 90.6 9.6 67 10-76 122-192 (202)
37 2aj0_A Probable cadmium-transp 98.6 4.6E-08 1.6E-12 75.7 6.5 60 10-73 3-63 (71)
38 2ew9_A Copper-transporting ATP 98.6 1.2E-07 4.2E-12 83.1 8.9 67 9-75 3-73 (149)
39 2rop_A Copper-transporting ATP 98.3 1.4E-06 4.8E-11 81.7 8.1 64 9-72 19-89 (202)
40 1p6t_A Potential copper-transp 98.2 3.1E-06 1.1E-10 74.5 9.0 64 8-71 4-71 (151)
41 3j09_A COPA, copper-exporting 98.2 3.1E-06 1.1E-10 95.1 9.9 65 11-75 3-71 (723)
42 3bpd_A Uncharacterized protein 84.0 4.5 0.00016 34.8 8.3 64 8-72 5-77 (100)
43 2x3d_A SSO6206; unknown functi 82.7 5.8 0.0002 33.9 8.4 64 8-72 3-76 (96)
44 2raq_A Conserved protein MTH88 82.3 6 0.00021 33.9 8.4 65 8-73 5-78 (97)
45 3cq1_A Putative uncharacterize 74.0 2.8 9.5E-05 35.4 3.9 36 11-46 42-83 (103)
46 1uwd_A Hypothetical protein TM 70.2 3.7 0.00013 34.6 3.9 36 11-46 43-84 (103)
47 2jsx_A Protein NAPD; TAT, proo 65.6 16 0.00053 30.9 6.8 47 21-67 16-63 (95)
48 2byk_A Chrac-16; nucleosome sl 62.2 1.6 5.5E-05 39.7 0.0 14 24-37 22-35 (140)
49 3lno_A Putative uncharacterize 60.2 5.1 0.00018 34.2 2.8 37 11-47 45-88 (108)
50 3iot_A Maltose-binding protein 58.8 1.9 6.5E-05 44.4 -0.2 11 22-32 42-52 (449)
51 4gwb_A Peptide methionine sulf 56.4 23 0.00079 33.1 6.7 47 21-67 9-73 (168)
52 1ff3_A Peptide methionine sulf 56.1 20 0.00067 34.7 6.4 27 21-47 49-75 (211)
53 1fvg_A Peptide methionine sulf 55.0 29 0.00099 33.3 7.3 28 21-48 50-77 (199)
54 3erw_A Sporulation thiol-disul 54.5 34 0.0012 28.0 7.1 58 11-74 36-99 (145)
55 1lu4_A Soluble secreted antige 54.0 33 0.0011 27.9 6.9 56 11-75 26-85 (136)
56 1zzo_A RV1677; thioredoxin fol 50.6 45 0.0015 26.9 7.1 50 11-69 27-80 (136)
57 1nwa_A Peptide methionine sulf 50.5 28 0.00095 33.5 6.4 46 21-66 32-95 (203)
58 1jdq_A TM006 protein, hypothet 50.2 31 0.0011 29.0 6.1 55 12-75 27-84 (98)
59 3bqh_A PILB, peptide methionin 47.6 33 0.0011 32.7 6.4 27 21-47 9-35 (193)
60 3lvj_C Sulfurtransferase TUSA; 47.4 35 0.0012 27.5 5.7 55 11-74 10-67 (82)
61 1ayz_A UBC2, ubiquitin-conjuga 44.5 4.9 0.00017 37.2 0.1 12 23-34 5-16 (169)
62 2nyt_A Probable C->U-editing e 43.4 42 0.0014 31.7 6.4 63 11-76 84-147 (190)
63 2j89_A Methionine sulfoxide re 43.1 42 0.0014 33.4 6.6 27 21-47 101-127 (261)
64 3ewl_A Uncharacterized conserv 43.0 82 0.0028 25.9 7.7 54 11-74 29-92 (142)
65 3kcm_A Thioredoxin family prot 42.7 44 0.0015 28.0 6.0 56 10-74 29-91 (154)
66 2kmw_A Uncharacterized protein 42.5 27 0.00094 31.6 4.8 18 36-53 24-42 (150)
67 1owx_A Lupus LA protein, SS-B, 41.6 72 0.0025 27.9 7.3 56 12-67 19-76 (121)
68 3e0m_A Peptide methionine sulf 38.8 50 0.0017 33.7 6.5 46 21-66 9-74 (313)
69 2b5x_A YKUV protein, TRXY; thi 37.9 59 0.002 26.7 6.0 59 11-73 31-94 (148)
70 3hz7_A Uncharacterized protein 37.2 50 0.0017 27.1 5.2 53 14-75 4-60 (87)
71 3ha9_A Uncharacterized thiored 36.5 78 0.0027 27.0 6.7 60 10-69 38-110 (165)
72 3gl3_A Putative thiol:disulfid 36.3 42 0.0014 28.1 4.8 56 11-75 30-91 (152)
73 3fkf_A Thiol-disulfide oxidore 34.0 1.1E+02 0.0037 25.1 7.0 57 10-75 34-97 (148)
74 3ia1_A THIO-disulfide isomeras 33.2 78 0.0027 26.5 6.1 57 11-75 32-92 (154)
75 1je3_A EC005, hypothetical 8.6 32.9 35 0.0012 28.7 3.7 54 12-74 28-84 (97)
76 2l5o_A Putative thioredoxin; s 32.4 80 0.0028 26.3 6.0 56 11-74 30-91 (153)
77 2f9s_A Thiol-disulfide oxidore 32.2 45 0.0016 28.0 4.4 55 10-73 27-87 (151)
78 2ytc_A PRE-mRNA-splicing facto 31.7 1.1E+02 0.0037 23.3 6.2 56 11-67 12-68 (85)
79 3iab_B Ribonucleases P/MRP pro 30.7 9.6 0.00033 34.7 -0.2 9 48-56 32-40 (140)
80 3kz5_E Protein SOPB; partition 30.6 35 0.0012 26.0 2.8 26 10-35 21-48 (52)
81 2cq3_A RNA-binding protein 9; 29.0 1.7E+02 0.0059 23.1 7.2 56 10-66 14-74 (103)
82 2cvb_A Probable thiol-disulfid 28.6 1.2E+02 0.004 26.6 6.6 61 11-73 35-100 (188)
83 3v4k_A DNA DC->DU-editing enzy 27.8 93 0.0032 29.8 6.0 60 12-75 102-162 (203)
84 1kng_A Thiol:disulfide interch 27.3 1.4E+02 0.0047 24.8 6.6 51 11-71 44-98 (156)
85 3lor_A Thiol-disulfide isomera 27.2 1.7E+02 0.0059 24.4 7.2 60 11-73 32-98 (160)
86 2kmw_A Uncharacterized protein 27.2 64 0.0022 29.1 4.6 7 11-17 15-21 (150)
87 2lxf_A Uncharacterized protein 27.0 1.1E+02 0.0039 26.7 6.1 58 8-66 32-94 (121)
88 3us3_A Calsequestrin-1; calciu 26.6 15 0.00051 37.1 0.3 11 55-65 110-120 (367)
89 2qn6_B Translation initiation 25.7 68 0.0023 26.9 4.1 24 11-34 5-30 (93)
90 3us3_A Calsequestrin-1; calciu 25.5 15 0.0005 37.2 0.0 13 56-68 214-226 (367)
91 4evm_A Thioredoxin family prot 25.1 2E+02 0.0068 22.7 7.0 56 10-69 23-83 (138)
92 2dgo_A Cytotoxic granule-assoc 25.0 2.2E+02 0.0076 22.9 7.3 57 10-67 14-77 (115)
93 2cph_A RNA binding motif prote 24.8 1.5E+02 0.0053 23.5 6.2 57 10-67 14-78 (107)
94 3hdc_A Thioredoxin family prot 24.0 54 0.0018 28.0 3.4 36 11-46 43-84 (158)
95 3eyt_A Uncharacterized protein 24.0 1.3E+02 0.0044 25.2 5.8 61 10-73 29-96 (158)
96 4fo5_A Thioredoxin-like protei 23.1 2.7E+02 0.0094 22.8 7.7 52 11-71 34-91 (143)
97 2k1h_A Uncharacterized protein 22.6 1.1E+02 0.0037 25.8 4.9 42 22-66 37-80 (94)
98 2w7v_A General secretion pathw 22.5 1.2E+02 0.0041 25.6 5.1 53 25-78 15-73 (95)
99 1x4c_A Splicing factor, argini 22.3 2.2E+02 0.0077 22.9 6.8 55 11-67 15-70 (108)
100 3oiz_A Antisigma-factor antago 22.2 46 0.0016 27.2 2.4 67 10-78 16-86 (99)
101 1d7q_A Translation initiation 21.6 79 0.0027 28.7 4.0 6 144-149 99-104 (143)
102 3eur_A Uncharacterized protein 21.6 3.1E+02 0.01 22.5 7.7 52 11-71 33-93 (142)
103 2lrn_A Thiol:disulfide interch 21.4 1.8E+02 0.0061 24.3 6.2 55 11-74 31-91 (152)
104 3ex7_B RNA-binding protein 8A; 21.2 2.4E+02 0.0082 23.1 6.9 55 11-66 22-83 (126)
105 1zyi_A Methylosome subunit pic 20.8 22 0.00074 33.3 0.1 8 30-37 25-32 (171)
106 2cpj_A Non-POU domain-containi 20.6 1.4E+02 0.0048 23.5 5.1 53 13-66 17-70 (99)
107 1wi8_A EIF-4B, eukaryotic tran 20.0 2.1E+02 0.0073 22.6 6.1 53 10-64 14-74 (104)
108 2ko1_A CTR148A, GTP pyrophosph 20.0 2.5E+02 0.0084 21.4 6.3 56 12-68 8-70 (88)
No 1
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.29 E-value=8.6e-12 Score=98.00 Aligned_cols=66 Identities=29% Similarity=0.537 Sum_probs=62.0
Q ss_pred eEEEEEEEeccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcCc
Q 009466 10 QTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 10 qtv~LkV~M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~~ 76 (534)
.+++|+|.|+|.+|+.+|+++|++++|| +++|++.+++++|+..+++++|+++|+++||.+++|+.
T Consensus 2 ~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 2 PKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred ceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 4677888899999999999999999999 99999999999999889999999999999999998864
No 2
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.22 E-value=4.5e-11 Score=94.45 Aligned_cols=67 Identities=28% Similarity=0.488 Sum_probs=62.6
Q ss_pred ceEEEEEEEeccHHHHHHHHHHHhcCC-CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 9 IQTYVLKVNIHCDGCKHKVKKILQKID-GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 9 ~qtv~LkV~M~C~sC~~kIekaL~kI~-GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
+.+++|+|.|+|.+|+.+|+++|++++ ||.+++|++.+++++|+..+++++|+++|+++||.+++|.
T Consensus 4 m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 4 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred ceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 467788888999999999999999999 9999999999999999988899999999999999988875
No 3
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=99.22 E-value=4.6e-11 Score=94.26 Aligned_cols=67 Identities=22% Similarity=0.446 Sum_probs=61.8
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcC
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~ 75 (534)
+++++|+|. |+|.+|+.+|+++|++++||.+++|++.+.+++|+.+ +++++|+++|+++||.+++++
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA 71 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence 467889999 9999999999999999999999999999999999853 689999999999999998875
No 4
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=99.21 E-value=7.1e-11 Score=91.73 Aligned_cols=65 Identities=25% Similarity=0.557 Sum_probs=60.3
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~ 74 (534)
++++|.|. |+|.+|+.+|+++|++++||..++|++.+.+++|+ ..+++++|+++|+++||.++++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 69 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 69 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEEC
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEeC
Confidence 56789999 99999999999999999999999999999999998 4589999999999999998763
No 5
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=98.71 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=64.8
Q ss_pred ccceEEEEEEEeccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcCcc
Q 009466 7 MKIQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQ 77 (534)
Q Consensus 7 ~~~qtv~LkV~M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~~~ 77 (534)
+.+.+++|+|.|+|..|+.+|+++|++++||..++|++...+++|+..+++++|+++|+++||.+.++...
T Consensus 16 ~~~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~ 86 (98)
T 2crl_A 16 GTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG 86 (98)
T ss_dssp CCCEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESC
T ss_pred ccceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCC
Confidence 34567788888999999999999999999999999999999999998889999999999999999887654
No 6
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=99.14 E-value=1.1e-10 Score=92.70 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=61.8
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcCc
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~~ 76 (534)
+.+++|+|. |+|.+|+.+|+++|++ +||..++|++.+.+++|+.+ ++++|+++|+++||.++++..
T Consensus 4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~~ 70 (73)
T 3fry_A 4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRSS 70 (73)
T ss_dssp CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECCS
T ss_pred cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecCc
Confidence 567899999 9999999999999999 99999999999999999988 899999999999999988753
No 7
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=99.02 E-value=1.9e-09 Score=82.33 Aligned_cols=65 Identities=23% Similarity=0.504 Sum_probs=57.9
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec--CCHHHHHHHHHhcCCceEEc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~--v~peeIieaIekaG~~A~l~ 74 (534)
.+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.+ +++++|+++|+++||.+.++
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~ 70 (71)
T 2xmw_A 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 70 (71)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCceeC
Confidence 45789999 9999999999999999999999999999999999754 67889999999999987653
No 8
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=99.00 E-value=2.4e-09 Score=83.37 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=59.1
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecC-CHHHHHHHHHhcCCceEEcC
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNV-DPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v-~peeIieaIekaG~~A~l~~ 75 (534)
+.+++|+|. |+|..|+.+|+++|.+++||..++|++.+.+++|+.+. ..++|+++|+++||.+....
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~~~ 70 (73)
T 1mwy_A 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDEQ 70 (73)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEECC
T ss_pred CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCcccccc
Confidence 567789999 99999999999999999999999999999999998542 36789999999999877543
No 9
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=99.00 E-value=1.6e-09 Score=83.09 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=58.8
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~ 74 (534)
++++|+|. |+|..|+.+|+++|++++||..++|++...+++|+.. ++.++|+++|+++||.+.+.
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (72)
T 1aw0_A 3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS 71 (72)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEeC
Confidence 46789999 9999999999999999999999999999999999854 57889999999999987653
No 10
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=99.00 E-value=1.5e-09 Score=83.37 Aligned_cols=66 Identities=27% Similarity=0.395 Sum_probs=59.2
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEc
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~ 74 (534)
..+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.+ ++.++|+++|+++||.+.+.
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (72)
T 1osd_A 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK 71 (72)
T ss_dssp EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEec
Confidence 456789999 9999999999999999999999999999999999743 67889999999999987653
No 11
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=98.98 E-value=2.5e-09 Score=81.99 Aligned_cols=63 Identities=17% Similarity=0.436 Sum_probs=57.5
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCce
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A 71 (534)
+.+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.+ +++++|+++|+++||.+
T Consensus 4 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 70 (71)
T 2l3m_A 4 MEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV 70 (71)
T ss_dssp EEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 567889999 9999999999999999999999999999999999743 67889999999999965
No 12
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=98.98 E-value=6e-10 Score=83.42 Aligned_cols=60 Identities=28% Similarity=0.431 Sum_probs=56.2
Q ss_pred EEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCce
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A 71 (534)
++|+|. |+|..|+.+|+++|++++||..++|++.+.+++|+..++.++|+++|+++||.+
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~ 63 (64)
T 2xmm_A 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV 63 (64)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 568898 999999999999999999999999999999999987788999999999999975
No 13
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=98.98 E-value=8e-10 Score=84.63 Aligned_cols=63 Identities=33% Similarity=0.614 Sum_probs=57.4
Q ss_pred EEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEc
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~ 74 (534)
++|+|. |+|..|+.+|+++|++++||.+++|++...+++|...+++++|+++|+++||.+..+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~ 65 (66)
T 2roe_A 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL 65 (66)
T ss_dssp BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEEC
T ss_pred EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEec
Confidence 358899 999999999999999999999999999999999965578899999999999987653
No 14
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=98.97 E-value=3.1e-09 Score=82.76 Aligned_cols=66 Identities=18% Similarity=0.420 Sum_probs=59.5
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcC
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~ 75 (534)
.+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.+ +++++|+++|+++||.+.++.
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (75)
T 3cjk_B 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 71 (75)
T ss_dssp EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence 46789999 9999999999999999999999999999999999753 578899999999999987754
No 15
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=98.96 E-value=6.9e-10 Score=91.73 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=58.6
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCce
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A 71 (534)
.+.+++|+|. |+|..|+.+|+++|++++||..++|++...+++|+..+++++|+++|+++||.+
T Consensus 20 ~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 20 QGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP 84 (85)
T ss_dssp --CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred cccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 4567889999 999999999999999999999999999999999998889999999999999975
No 16
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=98.95 E-value=1.5e-09 Score=85.29 Aligned_cols=67 Identities=18% Similarity=0.420 Sum_probs=60.6
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcC
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~ 75 (534)
+.+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.. +++++|+++|+++||.+.++.
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 72 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIE 72 (77)
T ss_dssp CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEES
T ss_pred CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECC
Confidence 567789999 9999999999999999999999999999999999753 578899999999999987764
No 17
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=98.95 E-value=1.7e-09 Score=87.31 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=61.9
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcCc
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~~ 76 (534)
...+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.+ +++++|+++|+++||.+.++..
T Consensus 7 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 79 (84)
T 1q8l_A 7 GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ 79 (84)
T ss_dssp SCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred CceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCC
Confidence 3567889999 9999999999999999999999999999999999853 5788999999999999877654
No 18
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=98.95 E-value=4.5e-09 Score=78.68 Aligned_cols=62 Identities=26% Similarity=0.458 Sum_probs=56.1
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCce
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A 71 (534)
.+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.+ +++++|+++|+++||.+
T Consensus 2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 67 (69)
T 2qif_A 2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 45679999 9999999999999999999999999999999999743 57889999999999975
No 19
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=98.94 E-value=3.6e-09 Score=81.56 Aligned_cols=66 Identities=20% Similarity=0.402 Sum_probs=59.5
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe---cCCHHHHHHHHHhcCCceEEc
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g---~v~peeIieaIekaG~~A~l~ 74 (534)
+.+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+. .+++++|+++|+++||.+.++
T Consensus 5 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 74 (76)
T 1opz_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE 74 (76)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence 567889999 999999999999999999999999999999999974 357889999999999987654
No 20
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=98.94 E-value=3.1e-09 Score=87.86 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=60.7
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe---cCCHHHHHHHHHhc---CCceEEcCcc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKS---GKHAELWGAQ 77 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g---~v~peeIieaIeka---G~~A~l~~~~ 77 (534)
.+++|+|. |+|..|+.+|+++|.+++||.+++|++.+.+++|+. .+++++|+++|+++ ||.+.++...
T Consensus 3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~~ 77 (90)
T 2g9o_A 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEV 77 (90)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCCC
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCCC
Confidence 45789999 999999999999999999999999999999999974 36788999999999 5988877654
No 21
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=98.94 E-value=2.1e-09 Score=84.75 Aligned_cols=68 Identities=18% Similarity=0.417 Sum_probs=61.0
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcC
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~ 75 (534)
...+++|+|. |+|..|+.+|+++|++++||..++|++.+.+++|+.+ ++.++|+++|+++||.+.+..
T Consensus 6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 77 (79)
T 1kvi_A 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 77 (79)
T ss_dssp TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECC
T ss_pred CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecC
Confidence 4567889999 9999999999999999999999999999999999753 578899999999999987654
No 22
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=98.93 E-value=2.4e-09 Score=81.93 Aligned_cols=62 Identities=29% Similarity=0.485 Sum_probs=56.4
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec--CCHHHHHHHHHhcCCceEEc
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~--v~peeIieaIekaG~~A~l~ 74 (534)
+|+|. |+|..|+.+|+++|++++||..++|++...+++|+.+ +++++|+++|+++||.+.+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 67 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLA 67 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEECC
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEeC
Confidence 58899 9999999999999999999999999999999998743 57889999999999987654
No 23
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=98.92 E-value=3.4e-09 Score=81.95 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=58.8
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcC
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~ 75 (534)
..+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.. +++++|+++|+++||.+.+..
T Consensus 3 ~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 73 (75)
T 1yjr_A 3 DGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVK 73 (75)
T ss_dssp CCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEESS
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCceeec
Confidence 345689999 9999999999999999999999999999999999854 466889999999999876543
No 24
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=98.91 E-value=4.2e-09 Score=80.76 Aligned_cols=65 Identities=18% Similarity=0.394 Sum_probs=58.9
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec--CCHHHHHHHHHhcCCceEEcC
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~--v~peeIieaIekaG~~A~l~~ 75 (534)
+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.+ ++.++|+++|+++||.+.++.
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~ 70 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence 5679999 9999999999999999999999999999999999753 678899999999999988764
No 25
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=98.90 E-value=4.4e-09 Score=79.58 Aligned_cols=61 Identities=20% Similarity=0.438 Sum_probs=56.0
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEE
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l 73 (534)
+|+|. |+|..|+.+|+++|++++||..++|++..++++|+.+ ++.++|+++|+++||.+++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 68899 9999999999999999999999999999999999853 6788999999999998765
No 26
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=98.89 E-value=6.6e-09 Score=81.47 Aligned_cols=68 Identities=26% Similarity=0.425 Sum_probs=60.4
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcCc
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~~ 76 (534)
+.+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|... +++++|+++|+++||.+.++..
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 73 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 73 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECCS
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecCc
Confidence 346789999 9999999999999999999999999999999999743 5788999999999999887653
No 27
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=98.87 E-value=5.4e-09 Score=79.09 Aligned_cols=64 Identities=22% Similarity=0.504 Sum_probs=57.4
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceE
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAE 72 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~ 72 (534)
+.+++|+|. |+|..|+.+|+++|+++++|..++|++...+++|+.+ ++.++|+++|+++||.+.
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 69 (71)
T 2ldi_A 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA 69 (71)
T ss_dssp CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence 456789999 9999999999999999999999999999999999743 577889999999999764
No 28
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.86 E-value=4.1e-09 Score=102.93 Aligned_cols=71 Identities=31% Similarity=0.564 Sum_probs=64.4
Q ss_pred eEEEEEEEeccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcCccccc
Q 009466 10 QTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQKAN 80 (534)
Q Consensus 10 qtv~LkV~M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~~~~~~ 80 (534)
.+++|+|+|+|..|+.+|+++|++++||.+++|++.+.+++|+..+++++|+++|+++||.++++.....+
T Consensus 6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~~~ 76 (222)
T 1qup_A 6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPN 76 (222)
T ss_dssp EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSCTT
T ss_pred eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCCcc
Confidence 45678888999999999999999999999999999999999998889999999999999999988765543
No 29
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=98.86 E-value=5.2e-09 Score=78.72 Aligned_cols=61 Identities=23% Similarity=0.453 Sum_probs=55.0
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec--CCHHHHHHHHHhcCCce
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~--v~peeIieaIekaG~~A 71 (534)
+++|+|. |+|..|+.+|+++|++++||..++|++...+++|+.+ ++.++|+++|+++||.+
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~ 65 (66)
T 1yg0_A 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV 65 (66)
T ss_dssp EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 4568899 9999999999999999999999999999999999853 47788999999999964
No 30
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=98.84 E-value=1.3e-08 Score=84.40 Aligned_cols=71 Identities=24% Similarity=0.296 Sum_probs=62.8
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcCccc
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWGAQK 78 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~~~~ 78 (534)
.+.+++|.|. |+|..|+.+|+++|.+++||..++|++...+++|+.. ++.+.|+++|+++||.+.++....
T Consensus 14 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~ 88 (95)
T 2kkh_A 14 KLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVNGE 88 (95)
T ss_dssp CSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCCCC
T ss_pred ceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecCCC
Confidence 3567889999 9999999999999999999999999999999999853 578899999999999988766543
No 31
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=98.82 E-value=4.3e-09 Score=80.88 Aligned_cols=61 Identities=33% Similarity=0.524 Sum_probs=54.9
Q ss_pred EEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEc
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~ 74 (534)
++|+|. |+|.+|+.+|+++|+++ ||..++|++...+++|+.+.. ++|+++|+++||.+.++
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~~~ 64 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVESY 64 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCCBC
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCceeeE
Confidence 568998 99999999999999999 999999999999999986655 88999999999986543
No 32
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=98.81 E-value=1.3e-08 Score=87.64 Aligned_cols=67 Identities=24% Similarity=0.441 Sum_probs=60.1
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEc
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~ 74 (534)
.+.+++|+|. |+|..|+.+|+++|+++++|..++|++.+.+++|+.+ +++++|+++|+++||.+.+.
T Consensus 6 ~~~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~~~ 76 (111)
T 2ofg_X 6 PLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAEP 76 (111)
T ss_dssp CCEEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEECC
T ss_pred cceEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeeeec
Confidence 3677889999 9999999999999999999999999999999999853 57789999999999987643
No 33
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.77 E-value=1.7e-08 Score=88.64 Aligned_cols=65 Identities=25% Similarity=0.451 Sum_probs=59.3
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~ 74 (534)
.+++|+|. |+|..|+.+|+++|++++||.+++|++.+++++|+.+ +++++|+++|+++||.+.++
T Consensus 80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 148 (149)
T 2ew9_A 80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLA 148 (149)
T ss_dssp SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEECC
T ss_pred ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEec
Confidence 56789999 9999999999999999999999999999999999853 68899999999999987653
No 34
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.77 E-value=9.4e-09 Score=102.16 Aligned_cols=70 Identities=30% Similarity=0.554 Sum_probs=63.5
Q ss_pred eEEEEEEEeccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcCcccc
Q 009466 10 QTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQKA 79 (534)
Q Consensus 10 qtv~LkV~M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~~~~~ 79 (534)
.+++|+|.|+|..|+.+|+++|++++||.+++|++.+.+++|+..+++++|+++|+++||.++++.....
T Consensus 7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~ 76 (249)
T 1jk9_B 7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP 76 (249)
T ss_dssp EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESST
T ss_pred eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCcc
Confidence 4567888899999999999999999999999999999999999888999999999999999988765544
No 35
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.76 E-value=1.7e-08 Score=89.19 Aligned_cols=67 Identities=27% Similarity=0.434 Sum_probs=61.2
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcCc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~~ 76 (534)
.+++|+|. |+|..|+.+|+++|.+++||.+++|++.+.+++|+.+ +++++|+++|+++||.+.++..
T Consensus 74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 144 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 144 (151)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCS
T ss_pred cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcCc
Confidence 56789999 9999999999999999999999999999999999843 6889999999999999887654
No 36
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.65 E-value=7.1e-08 Score=90.60 Aligned_cols=67 Identities=22% Similarity=0.468 Sum_probs=60.0
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcCc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~~ 76 (534)
.+++|+|. |+|..|+.+|+++|.+++||..++|++...+++|+.+ +++++|+++|+++||.+.++..
T Consensus 122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 192 (202)
T 2rop_A 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSE 192 (202)
T ss_dssp EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC--
T ss_pred eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCC
Confidence 56789999 9999999999999999999999999999999999753 6889999999999999888754
No 37
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=98.63 E-value=4.6e-08 Score=75.72 Aligned_cols=60 Identities=25% Similarity=0.579 Sum_probs=51.8
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEE
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l 73 (534)
.+++|.|. |+|..|+.+|+++|++++||..++|++...+++|+.... +++|+++||.+.+
T Consensus 3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~ 63 (71)
T 2aj0_A 3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHL 63 (71)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTC
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCccc
Confidence 35689999 999999999999999999999999999999999986543 5577888887544
No 38
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.60 E-value=1.2e-07 Score=83.10 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=60.2
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe---cCCHHHHHHHHHhcCCceEEcC
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g---~v~peeIieaIekaG~~A~l~~ 75 (534)
+++++|+|. |+|.+|+.+|+++|++++||.+++|++.+.+++|+. .+++++|+++|+++||.+.+..
T Consensus 3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 73 (149)
T 2ew9_A 3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME 73 (149)
T ss_dssp CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeec
Confidence 678899999 999999999999999999999999999999999874 3577899999999999887643
No 39
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.28 E-value=1.4e-06 Score=81.71 Aligned_cols=64 Identities=17% Similarity=0.376 Sum_probs=55.9
Q ss_pred ceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcC---CceE
Q 009466 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSG---KHAE 72 (534)
Q Consensus 9 ~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG---~~A~ 72 (534)
+.+++|+|. |+|.+|+.+|+++|.+++||..++|++...+++|+.+ +++++|+++|++++ |.+.
T Consensus 19 ~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~~gg~~v~ 89 (202)
T 2rop_A 19 VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVS 89 (202)
T ss_dssp -CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSSSSCSEEE
T ss_pred cEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhccCCeEEE
Confidence 467789999 9999999999999999999999999999999999743 67889999999883 6554
No 40
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.24 E-value=3.1e-06 Score=74.54 Aligned_cols=64 Identities=20% Similarity=0.445 Sum_probs=56.7
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCce
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A 71 (534)
.+.+++|.|. |+|.+|+.+|+++|.++++|..++|++...+++|+.. +++++|+++|+++||.+
T Consensus 4 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 71 (151)
T 1p6t_A 4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71 (151)
T ss_dssp CCEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred cceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence 4567789999 9999999999999999999999999999999988643 57788999999999865
No 41
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=98.19 E-value=3.1e-06 Score=95.09 Aligned_cols=65 Identities=11% Similarity=0.218 Sum_probs=58.9
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEec---CCHHHHHHHHHhcCCceEEcC
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~---v~peeIieaIekaG~~A~l~~ 75 (534)
+++|+|+ |+|.+|+.+||++|++++||.+++|++.+++++|+.+ +++++|+++|+++||++....
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~~~ 71 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVDEQ 71 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESSCC
T ss_pred eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCcccccc
Confidence 4679999 9999999999999999999999999999999999853 689999999999999876443
No 42
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=84.02 E-value=4.5 Score=34.78 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=46.6
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEE-----ecCCCeEEE--Ee-cCCHHHHHHHHHhcCCceE
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSI-----DSEQGKVTV--SG-NVDPSVLIKKLAKSGKHAE 72 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~V-----nl~~gkVtV--~g-~v~peeIieaIekaG~~A~ 72 (534)
..+|++|.|. -+-++-. .+.+.|.+++||..|++ |.++..+.| ++ +++.++|.++|++.|-.+.
T Consensus 5 ~iRRlVLDVlKPh~P~iv-dlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIH 77 (100)
T 3bpd_A 5 GLRRLVLDVLKPHEPKTI-VFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIH 77 (100)
T ss_dssp SEEEEEEEEEEESCSCHH-HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEE
T ss_pred cceEEEEEecCCCCCCHH-HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEE
Confidence 4688898888 6555554 67788899999877754 344554444 34 4999999999999986544
No 43
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=82.69 E-value=5.8 Score=33.94 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=47.2
Q ss_pred cceEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEe-----cCCCeEEE--Ee-cCCHHHHHHHHHhcCCceE
Q 009466 8 KIQTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSID-----SEQGKVTV--SG-NVDPSVLIKKLAKSGKHAE 72 (534)
Q Consensus 8 ~~qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vn-----l~~gkVtV--~g-~v~peeIieaIekaG~~A~ 72 (534)
..+|++|.|. +|-++-. .+.+.|.+++||..+++. .++..+.| ++ +++.++|.++|++.|-.+.
T Consensus 3 ~irRlVLDVlKP~h~P~iv-d~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IH 76 (96)
T 2x3d_A 3 AIRRLVLDVLKPIRGTSIV-DLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIH 76 (96)
T ss_dssp CEEEEEEEEEEESSSSCHH-HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEE
T ss_pred ceEEEEEEcccCCCCCCHH-HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEE
Confidence 4678888888 4777666 677888999998777643 44444444 44 4999999999999996544
No 44
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=82.26 E-value=6 Score=33.89 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=46.8
Q ss_pred cceEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEE-----EecCCCeEEEE--e-cCCHHHHHHHHHhcCCceEE
Q 009466 8 KIQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTS-----IDSEQGKVTVS--G-NVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 8 ~~qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~-----Vnl~~gkVtV~--g-~v~peeIieaIekaG~~A~l 73 (534)
..+|++|.|. -|-++-. .+.+.|.+++||..++ ++.++..+.|+ + .++.++|.++|++.|-.+.-
T Consensus 5 ~irRlVLDVlKPh~p~i~-d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHS 78 (97)
T 2raq_A 5 GLIRIVLDILKPHEPIIP-EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHS 78 (97)
T ss_dssp SEEEEEEEEECCSCSCHH-HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEecCCCCCCHH-HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEe
Confidence 4678888888 6555554 6677788888876665 44555555544 4 49999999999999965443
No 45
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=73.97 E-value=2.8 Score=35.41 Aligned_cols=36 Identities=17% Similarity=0.422 Sum_probs=27.1
Q ss_pred EEEEEEEeccHHH------HHHHHHHHhcCCCeeEEEEecCC
Q 009466 11 TYVLKVNIHCDGC------KHKVKKILQKIDGVFTTSIDSEQ 46 (534)
Q Consensus 11 tv~LkV~M~C~sC------~~kIekaL~kI~GV~sv~Vnl~~ 46 (534)
++.+.|.++|..| ...|+.+|++++||.+++|.+..
T Consensus 42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~ 83 (103)
T 3cq1_A 42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEec
Confidence 4556666777776 56789999999999998887443
No 46
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=70.21 E-value=3.7 Score=34.56 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=26.0
Q ss_pred EEEEEEEeccHHH------HHHHHHHHhcCCCeeEEEEecCC
Q 009466 11 TYVLKVNIHCDGC------KHKVKKILQKIDGVFTTSIDSEQ 46 (534)
Q Consensus 11 tv~LkV~M~C~sC------~~kIekaL~kI~GV~sv~Vnl~~ 46 (534)
++.+.|.+++..| ...|+.+|++++||.+++|.+..
T Consensus 43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~~ 84 (103)
T 1uwd_A 43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTF 84 (103)
T ss_dssp EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEec
Confidence 4556666665555 56688899999999998887443
No 47
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=65.56 E-value=16 Score=30.87 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe-cCCHHHHHHHHHhc
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG-NVDPSVLIKKLAKS 67 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g-~v~peeIieaIeka 67 (534)
+.-...|.+.|.++++|....++...++++|+- ..+.++|.+.|+++
T Consensus 16 p~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~I 63 (95)
T 2jsx_A 16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESV 63 (95)
T ss_dssp TTSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHHH
Confidence 444778999999999995555566677887763 35667776666543
No 48
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=62.17 E-value=1.6 Score=39.65 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=3.5
Q ss_pred HHHHHHHHhcCCCe
Q 009466 24 KHKVKKILQKIDGV 37 (534)
Q Consensus 24 ~~kIekaL~kI~GV 37 (534)
..+|+++++.-+.|
T Consensus 22 laRIKrIMK~dpdv 35 (140)
T 2byk_A 22 LSRVRTIMKSSMDT 35 (140)
T ss_dssp -------CCSSSSC
T ss_pred HHHHHHHHhcCccc
Confidence 35566666554444
No 49
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=60.24 E-value=5.1 Score=34.17 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=26.8
Q ss_pred EEEEEEEeccHHH------HHHHHHHH-hcCCCeeEEEEecCCC
Q 009466 11 TYVLKVNIHCDGC------KHKVKKIL-QKIDGVFTTSIDSEQG 47 (534)
Q Consensus 11 tv~LkV~M~C~sC------~~kIekaL-~kI~GV~sv~Vnl~~g 47 (534)
++.+.|.+++..| ...|+.+| .+++||.+|+|.+...
T Consensus 45 ~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~~~ 88 (108)
T 3lno_A 45 NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWN 88 (108)
T ss_dssp CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEECCS
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEEec
Confidence 4556666666666 56788888 8999999888765543
No 50
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=58.75 E-value=1.9 Score=44.44 Aligned_cols=11 Identities=9% Similarity=0.150 Sum_probs=4.7
Q ss_pred HHHHHHHHHHh
Q 009466 22 GCKHKVKKILQ 32 (534)
Q Consensus 22 sC~~kIekaL~ 32 (534)
.-..+|...|.
T Consensus 42 ~~~~kl~~~~~ 52 (449)
T 3iot_A 42 KLEEKFPQVAA 52 (449)
T ss_dssp THHHHHHHHGG
T ss_pred HHHHHHHHHhh
Confidence 33444444443
No 51
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=56.36 E-value=23 Score=33.07 Aligned_cols=47 Identities=15% Similarity=0.354 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC---------------eEEEEe---cCCHHHHHHHHHhc
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQG---------------KVTVSG---NVDPSVLIKKLAKS 67 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~g---------------kVtV~g---~v~peeIieaIeka 67 (534)
..|-.-+|..+.+|+||.++++-...+ .|.|+. .|+.++|++..-++
T Consensus 9 gGCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~isy~~LL~~F~~~ 73 (168)
T 4gwb_A 9 GGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQI 73 (168)
T ss_dssp ESCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTCCHHHHHHHHHHH
T ss_pred ccCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCCCHHHHHHHHHhh
Confidence 567777888999999999999876644 444553 37777887766543
No 52
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=56.13 E-value=20 Score=34.73 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQG 47 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~g 47 (534)
..|-+-+|..+.+|+||.+++|-...+
T Consensus 49 gGCFWg~E~~F~~l~GV~~t~vGYaGG 75 (211)
T 1ff3_A 49 MGXFWGVERLFWQLPGVYSTAAGYTGG 75 (211)
T ss_dssp CSSHHHHHHHHHTSTTEEEEEEEEESS
T ss_pred cCCeEEehhhHhcCCCeEEEEeeecCC
Confidence 567777788899999999998876644
No 53
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=54.98 E-value=29 Score=33.27 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCe
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK 48 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gk 48 (534)
..|-+-+|..+.+|+||.+++|-...+.
T Consensus 50 gGCFWg~E~~F~~l~GV~~t~vGYagG~ 77 (199)
T 1fvg_A 50 MGCFWGAERKFWTLKGVYSTQVGFAGGY 77 (199)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSS
T ss_pred cCCeeeeHHHHhhCCCeEEEEeeccCCC
Confidence 5666777888999999999988766553
No 54
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=54.48 E-value=34 Score=28.05 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=31.8
Q ss_pred EEEEEEE-eccHHHHHHH---HHHHhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEc
Q 009466 11 TYVLKVN-IHCDGCKHKV---KKILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kI---ekaL~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~ 74 (534)
.+.|.+- -+|..|...+ ++..+++. +|.-+.|+... ...+.+++.+.+++.++...++
T Consensus 36 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~------~~~~~~~~~~~~~~~~~~~~~~ 99 (145)
T 3erw_A 36 KTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN------SEQNQQVVEDFIKANKLTFPIV 99 (145)
T ss_dssp EEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGG------GSSCHHHHHHHHHHTTCCSCEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccC------CcCCHHHHHHHHHHcCCceeEE
Confidence 4455555 8999997643 33333333 34333333221 1137788888888777664443
No 55
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=54.00 E-value=33 Score=27.90 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=32.0
Q ss_pred EEEEEEE-eccHHHHHHH---HHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 11 TYVLKVN-IHCDGCKHKV---KKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kI---ekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
.+.+.+- -+|..|...+ ++..++.+.|.-+.|+ .+.+.+++.+.+++.++...++.
T Consensus 26 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~~~~~~~~~~~~ 85 (136)
T 1lu4_A 26 PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIA---------TRADVGAMQSFVSKYNLNFTNLN 85 (136)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEE---------CSSCHHHHHHHHHHHTCCSEEEE
T ss_pred EEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEE---------cCCCHHHHHHHHHHcCCCceEEE
Confidence 3445555 7899997644 3333344444433333 23357778888877776555443
No 56
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=50.56 E-value=45 Score=26.88 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=29.0
Q ss_pred EEEEEEE-eccHHHHHHH---HHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCC
Q 009466 11 TYVLKVN-IHCDGCKHKV---KKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK 69 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kI---ekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~ 69 (534)
.+.+.+- -+|..|...+ ++...+.+.|.-+.|+ .+.+.+++.+.+++.++
T Consensus 27 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~~~~~~ 80 (136)
T 1zzo_A 27 PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVA---------GLDQVPAMQEFVNKYPV 80 (136)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEE---------CSSCHHHHHHHHHHTTC
T ss_pred eEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEe---------CCCCHHHHHHHHHHcCC
Confidence 3445555 7999997544 3333334444433333 23456777777877776
No 57
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=50.50 E-value=28 Score=33.49 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC---------------eEEEEe---cCCHHHHHHHHHh
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQG---------------KVTVSG---NVDPSVLIKKLAK 66 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~g---------------kVtV~g---~v~peeIieaIek 66 (534)
..|-.-+|..+.+|+||.+++|-...+ .|.|+. .|+.++|++..-+
T Consensus 32 gGCFWg~E~~F~~l~GV~~t~vGYaGG~~~nPtYe~~G~HaEaV~V~yDp~~iSy~~LL~~Ff~ 95 (203)
T 1nwa_A 32 GGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQ 95 (203)
T ss_dssp ESCHHHHHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTCCHHHHHHHHHH
T ss_pred cCCeeeeHHHHhcCCCeEEEEeeecCCCCCCCChhhcCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 566666788899999999999876544 344543 3677788776644
No 58
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=50.19 E-value=31 Score=29.00 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=39.2
Q ss_pred EEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe--cCCHHHHHHHHHhcCCceEEcC
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g--~v~peeIieaIekaG~~A~l~~ 75 (534)
.+|.+- +.|+.-+-+++++|++++- .++++|.. ....+.|.+.+++.|+.+....
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---------Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e 84 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVLEIE 84 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 456666 8999999999999998732 12233332 2457888889999999876543
No 59
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=47.56 E-value=33 Score=32.74 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQG 47 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~g 47 (534)
..|-.-+|..+.+|+||.+++|-.+.+
T Consensus 9 gGCFWg~E~~F~~~~GV~~t~vGYagG 35 (193)
T 3bqh_A 9 GGCFWGLEAYFQRIDGVVDAVSGYANG 35 (193)
T ss_dssp ESCHHHHHHHHHTSTTEEEEEEEEESC
T ss_pred cCCeeehHHHHhcCCCEEEEEEeccCC
Confidence 566677788899999999998876655
No 60
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=47.37 E-value=35 Score=27.48 Aligned_cols=55 Identities=7% Similarity=-0.004 Sum_probs=38.8
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEc
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~ 74 (534)
.++|.+- +.|+.-+-+++++|.+++- ..+++|. .....+.|.+.+++.||.+...
T Consensus 10 ~~~lD~rGl~CP~Pvl~~kkal~~l~~---------G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 10 DHTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp SEEEECTTCCTTHHHHHHHHHHHTSCT---------TCEEEEEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 3456666 8999999999999998732 1223333 2345678888889999987654
No 61
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=44.49 E-value=4.9 Score=37.19 Aligned_cols=12 Identities=0% Similarity=0.404 Sum_probs=5.9
Q ss_pred HHHHHHHHHhcC
Q 009466 23 CKHKVKKILQKI 34 (534)
Q Consensus 23 C~~kIekaL~kI 34 (534)
+..+|.+.|+.|
T Consensus 5 a~~RL~kEl~~l 16 (169)
T 1ayz_A 5 ARRRLMRDFKRM 16 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 62
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=43.35 E-value=42 Score=31.70 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=42.6
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcCc
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGA 76 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~~ 76 (534)
.+++-|. --|..|+..|-.+|.+.++|..|.+-...- .. .+....+.++.|+++|..++....
T Consensus 84 g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~--~~-~~p~~~~g~~~L~~aGI~V~~~~~ 147 (190)
T 2nyt_A 84 NVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLF--MW-EEPEIQAALKKLKEAGCKLRIMKP 147 (190)
T ss_pred CeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecC--Cc-CChHHHHHHHHHHHCCCEEEEecH
Confidence 5677777 679999999999999999987765421100 00 011124667788999998886543
No 63
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=43.14 E-value=42 Score=33.41 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCC
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQG 47 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~g 47 (534)
..|-+-+|..+.+|+||.+++|-...+
T Consensus 101 gGCFWgvE~~F~~l~GV~~t~vGYaGG 127 (261)
T 2j89_A 101 AGCFWGVELAFQRVPGVTKTEVGYTQG 127 (261)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESS
T ss_pred cCCeeeeHHHHhhCCCeEEEEeeecCC
Confidence 567777788899999999998876655
No 64
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=43.01 E-value=82 Score=25.93 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=30.4
Q ss_pred EEEEEEE-eccHHHHHHH---------HHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEc
Q 009466 11 TYVLKVN-IHCDGCKHKV---------KKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kI---------ekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~ 74 (534)
.+.|.+- -+|..|...+ .+.+.. .+|.-+.|+ .+.+.+.+.+.+++.++...++
T Consensus 29 ~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~-~~~~~v~v~---------~d~~~~~~~~~~~~~~~~~~~~ 92 (142)
T 3ewl_A 29 YTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN-GTLRVLAIY---------PDENREEWATKAVYMPQGWIVG 92 (142)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH-TSEEEEEEE---------CSSCHHHHHHHHTTSCTTCEEE
T ss_pred EEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc-CCeEEEEEE---------ecCCHHHHHHHHHHcCCCccee
Confidence 3444455 7999998763 222221 234433333 2346677777787777654443
No 65
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=42.75 E-value=44 Score=27.99 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=29.8
Q ss_pred eEEEEEEE-eccHHHHHHHH---HHHhcCCC--eeEEEEecCCCeEEEEecCC-HHHHHHHHHhcCCceEEc
Q 009466 10 QTYVLKVN-IHCDGCKHKVK---KILQKIDG--VFTTSIDSEQGKVTVSGNVD-PSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIe---kaL~kI~G--V~sv~Vnl~~gkVtV~g~v~-peeIieaIekaG~~A~l~ 74 (534)
..+.|.+- -+|..|...+. +...++.. |.-+.|+ .+.. .+++.+.+++.++...++
T Consensus 29 k~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~---------~d~~~~~~~~~~~~~~~~~~~~~ 91 (154)
T 3kcm_A 29 QVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVS---------IDEGGKVAVEEFFRKTGFTLPVL 91 (154)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEE---------CCTTHHHHHHHHHHHHCCCCCEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEE---------cCCcchHHHHHHHHHcCCCeeEE
Confidence 34455555 79999986443 33333322 3332222 2222 666777777777654443
No 66
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=42.48 E-value=27 Score=31.55 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=12.2
Q ss_pred CeeEEEEecC-CCeEEEEe
Q 009466 36 GVFTTSIDSE-QGKVTVSG 53 (534)
Q Consensus 36 GV~sv~Vnl~-~gkVtV~g 53 (534)
.|..+.|++. ..++.|..
T Consensus 24 ~~~~v~V~~~~~~~l~~~~ 42 (150)
T 2kmw_A 24 DAKDISVKCEPQGLFSFSA 42 (150)
T ss_dssp SEEEEEECCCTTEEEEEEE
T ss_pred CCCceEEEEecCCEEEEEE
Confidence 3556778887 56777764
No 67
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.62 E-value=72 Score=27.90 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=41.9
Q ss_pred EEEEEE-eccH-HHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhc
Q 009466 12 YVLKVN-IHCD-GCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 67 (534)
Q Consensus 12 v~LkV~-M~C~-sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIeka 67 (534)
+.|.|. +... .+...|+.++++..-|..|++.....+..|+-....++-.++|+.+
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHh
Confidence 456777 6666 7899999999999999999998888888888653245555555553
No 68
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=38.80 E-value=50 Score=33.74 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCe-----------------EEEEe---cCCHHHHHHHHHh
Q 009466 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK-----------------VTVSG---NVDPSVLIKKLAK 66 (534)
Q Consensus 21 ~sC~~kIekaL~kI~GV~sv~Vnl~~gk-----------------VtV~g---~v~peeIieaIek 66 (534)
..|-.-+|..+.+|+||.+++|-.+.+. |.|+. .|+.++|++..-+
T Consensus 9 gGCFWg~E~~F~~l~GV~~t~~GYagG~~~nPtY~~Vc~TGHaEaV~V~yDp~~isy~~LL~~f~~ 74 (313)
T 3e0m_A 9 GGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLREILLYYFR 74 (313)
T ss_dssp CSCHHHHHHHHTTSTTEEEEEEEEESCSSSCCCTTTHHHHTCEEEEEEEECTTTSCHHHHHHHHHH
T ss_pred cCCchhhHHHHhhCCCeEEeecccCCCCCCCCChhhhccCCCeEEEEEEECCCcCCHHHHHHHHHh
Confidence 6777778899999999999998765443 44443 3677777765543
No 69
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=37.86 E-value=59 Score=26.66 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=30.3
Q ss_pred EEEEEEE-eccHHHHHHHHH---HHhcCCC-eeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEE
Q 009466 11 TYVLKVN-IHCDGCKHKVKK---ILQKIDG-VFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIek---aL~kI~G-V~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l 73 (534)
.+.+.+- -+|..|...+.. ..+++.. |.-+.|+..... ...+++++.+.+++.++...+
T Consensus 31 ~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 94 (148)
T 2b5x_A 31 PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSE----DDLDPGKIKETAAEHDITQPI 94 (148)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCST----TTSSHHHHHHHHHHTTCCSCE
T ss_pred EEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCc----cccCHHHHHHHHHHcCCCcce
Confidence 3445555 799999754332 2222222 433333322110 112678888888877765443
No 70
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=37.17 E-value=50 Score=27.06 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=37.3
Q ss_pred EEEE-eccHHHHHHHHHHHhcCC-CeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEcC
Q 009466 14 LKVN-IHCDGCKHKVKKILQKID-GVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 14 LkV~-M~C~sC~~kIekaL~kI~-GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~~ 75 (534)
|.+- +.|+.-+-+++++|.+++ . ..+++|. ...+.++|.+.+++.|+.+....
T Consensus 4 lD~rGl~CP~Pvl~~kkal~~l~~~---------G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~ 60 (87)
T 3hz7_A 4 IDALGQVCPIPVIRAKKALAELGEA---------GGVVTVLVDNDISRQNLQKMAEGMGYQSEYLE 60 (87)
T ss_dssp EECTTCCTTHHHHHHHHHHHTTGGG---------CCEEEEEESSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHhccCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 4455 899999999999999873 1 1223333 22466788888999999876543
No 71
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=36.53 E-value=78 Score=26.97 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=31.5
Q ss_pred eEEEEEEE-eccHHHHHHHH---HHHhcCCCeeEEEEecCCCe----EEE-----EecCCHHHHHHHHHhcCC
Q 009466 10 QTYVLKVN-IHCDGCKHKVK---KILQKIDGVFTTSIDSEQGK----VTV-----SGNVDPSVLIKKLAKSGK 69 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIe---kaL~kI~GV~sv~Vnl~~gk----VtV-----~g~v~peeIieaIekaG~ 69 (534)
+.++|.+- -+|..|...+. +..++.++|.-+.|+....+ +.+ ....+.+++.+.+++.++
T Consensus 38 k~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (165)
T 3ha9_A 38 DVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGD 110 (165)
T ss_dssp SEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSC
T ss_pred CEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCC
Confidence 34455555 79999976553 33334445554444433100 000 001467778888887776
No 72
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=36.28 E-value=42 Score=28.08 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=30.4
Q ss_pred EEEEEEE-eccHHHHHHHHHH---HhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 11 TYVLKVN-IHCDGCKHKVKKI---LQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIeka---L~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
.+.|.+- -+|..|...+... ..++. +|.-+. |..+...+++.+.+++.++...++.
T Consensus 30 ~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~---------v~~d~~~~~~~~~~~~~~~~~~~~~ 91 (152)
T 3gl3_A 30 VVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVA---------VNLDAKTGDAMKFLAQVPAEFTVAF 91 (152)
T ss_dssp EEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEE---------EECCSSHHHHHHHHHHSCCCSEEEE
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEE---------EECCCCHHHHHHHHHHcCCCCceeE
Confidence 4445555 7899997654332 22221 233222 2333456778888888776655443
No 73
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=34.03 E-value=1.1e+02 Score=25.05 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=32.1
Q ss_pred eEEEEEEE-eccHHHHHHHHH---HHhcC---CCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 10 QTYVLKVN-IHCDGCKHKVKK---ILQKI---DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIek---aL~kI---~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
..+.|.+- -+|..|...+.. ..+++ .+|.-+.| ..+...+++.+.+++.++...++.
T Consensus 34 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v---------~~d~~~~~~~~~~~~~~~~~~~~~ 97 (148)
T 3fkf_A 34 RYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGI---------SLDIDREAWETAIKKDTLSWDQVC 97 (148)
T ss_dssp SEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEE---------ECCSCHHHHHHHHHHTTCCSEEEC
T ss_pred cEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEE---------ECCCCHHHHHHHHHHcCCCceEEE
Confidence 44555555 789999765533 22232 22333323 223456778888888777655544
No 74
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=33.15 E-value=78 Score=26.48 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=32.1
Q ss_pred EEEEEEE-eccHHHHHHHHH---HHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 11 TYVLKVN-IHCDGCKHKVKK---ILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIek---aL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
.+.|.+- -+|..|...+.. ..++. .|.-+.|+.. ...+.+++.+.+++.++...++.
T Consensus 32 ~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d-------~~~~~~~~~~~~~~~~~~~~~~~ 92 (154)
T 3ia1_A 32 PAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISRE-------PRDTREVVLEYMKTYPRFIPLLA 92 (154)
T ss_dssp SEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECC-------TTCCHHHHHHHHTTCTTEEECBC
T ss_pred eEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCC-------CcccHHHHHHHHHHcCCCccccc
Confidence 3445555 799999765433 22333 4433333321 13467778888888877655544
No 75
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=32.90 E-value=35 Score=28.69 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=37.7
Q ss_pred EEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHhcCCceEEc
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIekaG~~A~l~ 74 (534)
.+|.+. +.|+.-+-+++++|++++-- ++++|. .....+.|.+.+++.|+.+...
T Consensus 28 ~~LD~rGl~CP~PvlktkkaL~~l~~G---------e~L~Vl~dd~~a~~dIp~~~~~~G~~v~~~ 84 (97)
T 1je3_A 28 YRLDMVGEPCPYPAVATLEAMPQLKKG---------EILEVVSDCPQSINNIPLDARNHGYTVLDI 84 (97)
T ss_dssp EEECSBCCSSSSSTHHHHHHTTTCCSS---------CEEEEEEBCSSSSCHHHHHHHHHTCSEEEE
T ss_pred eEEeCCCCCCCHHHHHHHHHHHcCCCC---------CEEEEEECCcchHHHHHHHHHHCCCEEEEE
Confidence 445555 89999999999999987321 122332 2245678888899999987654
No 76
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=32.44 E-value=80 Score=26.29 Aligned_cols=56 Identities=9% Similarity=0.120 Sum_probs=29.8
Q ss_pred EEEEEEE-eccHHHHHHHHH---HHhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEc
Q 009466 11 TYVLKVN-IHCDGCKHKVKK---ILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIek---aL~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~ 74 (534)
.+.|.+- -+|..|...+.. ...++. +|.-+.|+.. ..+.+++.+.+++.++...+.
T Consensus 30 ~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~--------~~~~~~~~~~~~~~~~~~~~~ 91 (153)
T 2l5o_A 30 VTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQP--------IDPIESVRQYVKDYGLPFTVM 91 (153)
T ss_dssp EEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECT--------TSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecC--------CCCHHHHHHHHHHcCCCceEE
Confidence 3444454 799999764433 222222 3433333221 135677777777777665443
No 77
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=32.19 E-value=45 Score=27.98 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=29.2
Q ss_pred eEEEEEEE-eccHHHHHHHHHH---HhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEE
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKI---LQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIeka---L~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l 73 (534)
..+.|.+- -+|..|...+... ..++. +|.-+.| ..+.+.+++.+.+++.++...+
T Consensus 27 k~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v---------~~d~~~~~~~~~~~~~~~~~~~ 87 (151)
T 2f9s_A 27 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAV---------NVGESKIAVHNFMKSYGVNFPV 87 (151)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEE---------EESCCHHHHHHHHHHHTCCSCE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEE---------ECCCCHHHHHHHHHHcCCCceE
Confidence 34455555 7999997554332 22221 2333322 2333567777777777665443
No 78
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.74 E-value=1.1e+02 Score=23.31 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=41.7
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhc
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 67 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIeka 67 (534)
..+|-|. +........|++.+.+.-.|..+.+....+-+.|+.. +.++..++|+.+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~-~~~~A~~a~~~l 68 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA-TRQAAEVAAEKS 68 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEES-SHHHHHHHHHTT
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEEC-CHHHHHHHHHHh
Confidence 3456677 7777778889999999888999998876666667653 667777777754
No 79
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=30.68 E-value=9.6 Score=34.69 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=3.6
Q ss_pred eEEEEecCC
Q 009466 48 KVTVSGNVD 56 (534)
Q Consensus 48 kVtV~g~v~ 56 (534)
.+-|...+.
T Consensus 32 ~iYV~skTp 40 (140)
T 3iab_B 32 TIFVKSTTP 40 (140)
T ss_dssp EEECCSSCC
T ss_pred eEEEecCCc
Confidence 344443333
No 80
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=30.58 E-value=35 Score=26.01 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=20.5
Q ss_pred eEEEEEEE--eccHHHHHHHHHHHhcCC
Q 009466 10 QTYVLKVN--IHCDGCKHKVKKILQKID 35 (534)
Q Consensus 10 qtv~LkV~--M~C~sC~~kIekaL~kI~ 35 (534)
..|+|.++ ..-..|..+||.+|+.+.
T Consensus 21 d~Vsf~Ld~~~iP~~~IeKIE~lL~e~~ 48 (52)
T 3kz5_E 21 DKMVLNLDRSRVPTECIEKIEAILKELE 48 (52)
T ss_dssp TEEEEEEETTTSCHHHHHHHHHHHHHHC
T ss_pred CeEEEEeccccCCHHHHHHHHHHHHHHh
Confidence 35677777 567999999999998653
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.04 E-value=1.7e+02 Score=23.12 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=39.1
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecC----CCeEEEEecCCHHHHHHHHHh
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE----QGKVTVSGNVDPSVLIKKLAK 66 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~----~gkVtV~g~v~peeIieaIek 66 (534)
...+|-|. +........|+..+.+.--|.++.|... ...+.|+. .+.++..++|+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f-~~~~~a~~A~~~ 74 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF-ENSADADRAREK 74 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEE-SCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEE-CCHHHHHHHHHH
Confidence 34456677 7777778889999999988998888755 33444553 356666667764
No 82
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=28.64 E-value=1.2e+02 Score=26.61 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=30.0
Q ss_pred EEEEEEE-eccHHHHHH---HHHHHhcCCC-eeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEE
Q 009466 11 TYVLKVN-IHCDGCKHK---VKKILQKIDG-VFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~k---IekaL~kI~G-V~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l 73 (534)
.++|.+- -+|..|... +++...++.. |.-+.|+....+. ....+.+++.+.+++.++...+
T Consensus 35 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~--~~~d~~~~~~~~~~~~~~~~~~ 100 (188)
T 2cvb_A 35 LLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEK--YPEDAPEKMAAFAEEHGIFFPY 100 (188)
T ss_dssp EEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTT--CGGGSHHHHHHHHHHHTCCSCE
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCcccc--ccccCHHHHHHHHHHhCCCceE
Confidence 4445555 789999753 3444444433 3333232211000 0013567777777777665443
No 83
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=27.84 E-value=93 Score=29.85 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=35.5
Q ss_pred EEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEcC
Q 009466 12 YVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (534)
Q Consensus 12 v~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~~ 75 (534)
|+.-|. --|..|+.+|.+-|.+-+.|+ ++|- ..++--. +..-++=+..|.++|..+.+..
T Consensus 102 vTwy~SWSPC~~CA~~v~~FL~~~~~v~-L~If--~aRLY~~-~~~~~~gLr~L~~aG~~v~iM~ 162 (203)
T 3v4k_A 102 VTCFTSWSPCFSCAQEMAKFISKNKHVS-LCIK--TARIYDD-QGRCQEGLRTLAEAGAKISIMT 162 (203)
T ss_pred EEEEEeCCChHHHHHHHHHHHhhCCCeE-EEEE--EEeeccc-CchHHHHHHHHHHCCCeEEecC
Confidence 344444 569999999999999888774 2221 1111111 2233444556667787766654
No 84
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=27.33 E-value=1.4e+02 Score=24.80 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=28.1
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcC---CCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCce
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKI---DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI---~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A 71 (534)
.+.|.+- -+|..|...+. .|+++ ..|.-+. |..+.+.+.+.+.+++.++..
T Consensus 44 ~~ll~f~~~~C~~C~~~~~-~l~~l~~~~~v~~v~---------v~~~~~~~~~~~~~~~~~~~~ 98 (156)
T 1kng_A 44 VSLVNVWASWCVPCHDEAP-LLTELGKDKRFQLVG---------INYKDAADNARRFLGRYGNPF 98 (156)
T ss_dssp CEEEEEECTTCHHHHHHHH-HHHHHTTCTTSEEEE---------EEESCCHHHHHHHHHHHCCCC
T ss_pred EEEEEEEcccCHhHHHHHH-HHHHHHhcCCeEEEE---------EECCCCHHHHHHHHHHcCCCC
Confidence 3445555 89999975443 33333 1233322 333345677777777766543
No 85
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=27.23 E-value=1.7e+02 Score=24.38 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=31.1
Q ss_pred EEEEEEE-eccHHHHHH-H---HHHHhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEE
Q 009466 11 TYVLKVN-IHCDGCKHK-V---KKILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~k-I---ekaL~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l 73 (534)
.+.|.+- -+|..|... + ++..++.. +|.-+.|+..... ....+.+++.+.+++.++...+
T Consensus 32 ~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T 3lor_A 32 VVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEH---HDVMTPEALKVFIDEFGIKFPV 98 (160)
T ss_dssp EEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSC---GGGSCHHHHHHHHHHTTCCSCE
T ss_pred EEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccc---cccCCHHHHHHHHHHcCCCCcE
Confidence 4455555 799999873 3 23333332 3443333321000 0024678888888887765433
No 86
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=27.19 E-value=64 Score=29.08 Aligned_cols=7 Identities=29% Similarity=0.244 Sum_probs=3.4
Q ss_pred EEEEEEE
Q 009466 11 TYVLKVN 17 (534)
Q Consensus 11 tv~LkV~ 17 (534)
.|+|+|.
T Consensus 15 ~V~ltI~ 21 (150)
T 2kmw_A 15 KVYLTVA 21 (150)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 3455554
No 87
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=26.96 E-value=1.1e+02 Score=26.74 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=33.9
Q ss_pred cceEEEEEEE--eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEe--c-CCHHHHHHHHHh
Q 009466 8 KIQTYVLKVN--IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--N-VDPSVLIKKLAK 66 (534)
Q Consensus 8 ~~qtv~LkV~--M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g--~-v~peeIieaIek 66 (534)
.+.++.|+|. +..-.-...+.+...++ ++.-+.-|+..++|+|.. + ...+++++.|++
T Consensus 32 di~t~~frV~G~VQGVGFR~~v~~~A~~l-gL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~ 94 (121)
T 2lxf_A 32 DVTTLCYRVTGKVQGVFFRKYTKKEADAL-SLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK 94 (121)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHH-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEeeCCcCchHHHHHHHHHc-CCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 3567888888 33322222222222222 677777888888787653 2 456667777764
No 88
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=26.62 E-value=15 Score=37.12 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.9
Q ss_pred CCHHHHHHHHH
Q 009466 55 VDPSVLIKKLA 65 (534)
Q Consensus 55 v~peeIieaIe 65 (534)
.+.+.|++.|+
T Consensus 110 ~~~~~i~~~i~ 120 (367)
T 3us3_A 110 FSADTLVEFLL 120 (367)
T ss_dssp CSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666766664
No 89
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=25.72 E-value=68 Score=26.93 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=17.2
Q ss_pred EEEEEEEeccHHH--HHHHHHHHhcC
Q 009466 11 TYVLKVNIHCDGC--KHKVKKILQKI 34 (534)
Q Consensus 11 tv~LkV~M~C~sC--~~kIekaL~kI 34 (534)
++...|+++|..+ +.+|+++|.+.
T Consensus 5 kIra~iel~c~~~dGIe~IK~AL~~a 30 (93)
T 2qn6_B 5 KMSGLITVRTNEPLGVEKIKEVISKA 30 (93)
T ss_dssp EEEEEEEEEECCTTTHHHHHHHHHHH
T ss_pred EEEEEEEEEeCCCchHHHHHHHHHHH
Confidence 3445566889665 88999999754
No 90
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=25.51 E-value=15 Score=37.18 Aligned_cols=13 Identities=0% Similarity=0.092 Sum_probs=5.9
Q ss_pred CHHHHHHHHHhcC
Q 009466 56 DPSVLIKKLAKSG 68 (534)
Q Consensus 56 ~peeIieaIekaG 68 (534)
+.++|++-|...-
T Consensus 214 ~~~~l~~fi~~~~ 226 (367)
T 3us3_A 214 SEEEIVNFVEEHR 226 (367)
T ss_dssp CHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcC
Confidence 4444554444433
No 91
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=25.13 E-value=2e+02 Score=22.68 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=28.7
Q ss_pred eEEEEEEE-eccHHHHHHHHH---HHhcCC-CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCC
Q 009466 10 QTYVLKVN-IHCDGCKHKVKK---ILQKID-GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK 69 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIek---aL~kI~-GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~ 69 (534)
..+.|.+- -+|..|...+.. ..++.+ .|.-+.|+.... ....+.+++.+.+++.++
T Consensus 23 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~----~~~~~~~~~~~~~~~~~~ 83 (138)
T 4evm_A 23 KKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGH----KGEQSEADFKNWYKGLDY 83 (138)
T ss_dssp SEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTS----TTCCCHHHHHHHHTTCCC
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCC----CchhhHHHHHHHHhhcCC
Confidence 34555555 799999755433 233322 343333321110 022466777777776665
No 92
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=25.05 E-value=2.2e+02 Score=22.94 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=39.2
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecC--CC----eEEEEecCCHHHHHHHHHhc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE--QG----KVTVSGNVDPSVLIKKLAKS 67 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~--~g----kVtV~g~v~peeIieaIeka 67 (534)
...+|-|. |........|+..+...--|..+.|... +. -+.|+. .+.++..++|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l 77 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF-FNKWDAENAIQQM 77 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE-SSHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEE-CCHHHHHHHHHHh
Confidence 34556677 8777778889999999888988887654 22 233433 4677777777653
No 93
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.82 E-value=1.5e+02 Score=23.45 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=38.3
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecC-------CCeEEEEecCCHHHHHHHHHhc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE-------QGKVTVSGNVDPSVLIKKLAKS 67 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~-------~gkVtV~g~v~peeIieaIeka 67 (534)
...+|-|. +....-...|+..+...-.|.++.+... .+-+.|+. .+.++..++|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l 78 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF-ITKQDAKKAFNAL 78 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEE-SSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEE-CCHHHHHHHHHHh
Confidence 34456666 6666667789999999988988888654 23445553 3566666777654
No 94
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=24.04 E-value=54 Score=27.97 Aligned_cols=36 Identities=8% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEEE-eccHHHHHHH---HHHHhcCC--CeeEEEEecCC
Q 009466 11 TYVLKVN-IHCDGCKHKV---KKILQKID--GVFTTSIDSEQ 46 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kI---ekaL~kI~--GV~sv~Vnl~~ 46 (534)
.+.|.+- -+|..|...+ ++...+++ +|.-+.|+...
T Consensus 43 ~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~ 84 (158)
T 3hdc_A 43 IVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK 84 (158)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH
Confidence 4455555 7999997543 33344443 55555555443
No 95
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=23.98 E-value=1.3e+02 Score=25.20 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=32.3
Q ss_pred eEEEEEEE-eccHHHHHH-H---HHHHhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEE
Q 009466 10 QTYVLKVN-IHCDGCKHK-V---KKILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAEL 73 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~k-I---ekaL~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l 73 (534)
..+.|.+- -+|..|... + ++..++.. +|.-+.|+..... ....+.+++.+.+++.++...+
T Consensus 29 k~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 96 (158)
T 3eyt_A 29 KVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEH---HEAMTPISLKAFLHEYRIKFPV 96 (158)
T ss_dssp SEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSC---GGGSCHHHHHHHHHHTTCCSCE
T ss_pred CEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccc---cccCCHHHHHHHHHHcCCCceE
Confidence 34555555 799999873 3 22233332 4544444322100 0023678888888887765433
No 96
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=23.05 E-value=2.7e+02 Score=22.82 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=29.4
Q ss_pred EEEEEEE-eccHHHHHHH---HHHHhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCce
Q 009466 11 TYVLKVN-IHCDGCKHKV---KKILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kI---ekaL~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A 71 (534)
.+.|.+- -+|..|...+ ++..++.. +|.-+.|+ .+.+.+++.+.+++.++..
T Consensus 34 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs---------~d~~~~~~~~~~~~~~~~~ 91 (143)
T 4fo5_A 34 YTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSIS---------MDEKESIFTETVKIDKLDL 91 (143)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEE---------CCSCHHHHHHHHHHHTCCG
T ss_pred EEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEE---------ccCCHHHHHHHHHHhCCCC
Confidence 4445555 7899998764 33333332 34333333 2335677888888766653
No 97
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=22.59 E-value=1.1e+02 Score=25.76 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCeEEEE--ecCCHHHHHHHHHh
Q 009466 22 GCKHKVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAK 66 (534)
Q Consensus 22 sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~--g~v~peeIieaIek 66 (534)
.|+- +-+.|-.|+||.+|-+. ..-|+|+ ..+++++|...|..
T Consensus 37 ~~SP-LA~~LF~i~gVk~Vf~g--~dFITVtK~~~~dW~~ikp~I~~ 80 (94)
T 2k1h_A 37 GQPE-FINRLFEIEGVKSIFYV--LDFISIDKEDNANWNELLPQIEN 80 (94)
T ss_dssp TSCH-HHHHHHTSTTEEEEEEE--TTEEEEEECTTCCHHHHHHHHHH
T ss_pred cCCH-HHHHhhCCCCeeEEEEe--CCEEEEecCCCCCHHHHHHHHHH
Confidence 3443 45555589999987765 4467776 34789998887764
No 98
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=22.45 E-value=1.2e+02 Score=25.62 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCe--eEEEEecCCCeEEEEe---c-CCHHHHHHHHHhcCCceEEcCccc
Q 009466 25 HKVKKILQKIDGV--FTTSIDSEQGKVTVSG---N-VDPSVLIKKLAKSGKHAELWGAQK 78 (534)
Q Consensus 25 ~kIekaL~kI~GV--~sv~Vnl~~gkVtV~g---~-v~peeIieaIekaG~~A~l~~~~~ 78 (534)
..+..+|..+++| .++++|....+++|.. + ...+.+...|.+ +|.++.-....
T Consensus 15 ~~L~~~l~~vp~l~~~sLryD~~R~ELrlq~~A~dF~~~E~lr~~l~~-gf~Ve~Gs~~~ 73 (95)
T 2w7v_A 15 AALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAE-KFNVEQGQLNR 73 (95)
T ss_dssp GGHHHHHHTSTTCEEEEEEEETTTTEEEEEEEESSSHHHHHHHHHHHT-TEEEEECCCEE
T ss_pred HHHHHHhccCCCceEEEEeecCCCCeEEEEEecCCHHHHHHHHHHhhc-CcEEehhhhcc
Confidence 3466778888886 4555666777787752 2 356777888865 99988766543
No 99
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.29 E-value=2.2e+02 Score=22.86 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=39.8
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHhc
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKS 67 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIeka 67 (534)
.++|-|. |.-......|+..+.+.--|..+.|... .-+.|+. .+.++..++|+.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f-~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEF-VRKEDMTYAVRKL 70 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEE-SSHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEE-CCHHHHHHHHHHH
Confidence 3456666 7666678889999999888998888665 5555654 3677777788754
No 100
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=22.16 E-value=46 Score=27.23 Aligned_cols=67 Identities=9% Similarity=0.120 Sum_probs=41.0
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEE---ecCCHHHHHHHHHhcCCceEEcCccc
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS---GNVDPSVLIKKLAKSGKHAELWGAQK 78 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~---g~v~peeIieaIekaG~~A~l~~~~~ 78 (534)
.+++|+|. --.-..+..+++.|...+....+.+++.. |... +.....++++.+++.+....++...+
T Consensus 16 ~~~v~~l~G~L~f~~a~~~~~~l~~~~~~~~vvlDls~--v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 86 (99)
T 3oiz_A 16 RERIYRVEGQLFYASVEDFMAAFDFREALDRVVIDVSR--AHIWDISSVQALDMAVLKFRREGAEVRIVGMNE 86 (99)
T ss_dssp SEEEEEEEEEECGGGHHHHHHTCCTTSCCSEEEEEEEE--EEECSHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred CEEEEEEeeEEehhhHHHHHHHHhhcCCCCEEEEECCC--CCccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 46778888 44555667788877655555555555442 2221 11244556667778888888877543
No 101
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.62 E-value=79 Score=28.73 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=2.5
Q ss_pred HHHHHh
Q 009466 144 LQHLQQ 149 (534)
Q Consensus 144 ~qq~qq 149 (534)
...|..
T Consensus 99 vk~L~k 104 (143)
T 1d7q_A 99 ARSLKA 104 (143)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 102
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=21.61 E-value=3.1e+02 Score=22.48 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=27.8
Q ss_pred EEEEEEE-eccHHHHHHHHHHHh------cC--CCeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCce
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQ------KI--DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 71 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~------kI--~GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A 71 (534)
.+.|.+- -+|..|...+....+ +. .+|.-+.|+. +...+.+.+.|++..+..
T Consensus 33 ~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~---------d~~~~~~~~~~~~~~~~~ 93 (142)
T 3eur_A 33 YTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYP---------DEELDEWKKHRNDFAKEW 93 (142)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEEC---------SSCHHHHHHHGGGSCTTS
T ss_pred EEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEc---------CCCHHHHHHHHHhccccc
Confidence 3444444 789999765433211 11 3444443332 335566777777766543
No 103
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=21.41 E-value=1.8e+02 Score=24.32 Aligned_cols=55 Identities=7% Similarity=0.087 Sum_probs=28.8
Q ss_pred EEEEEEE-eccHHHHHHHHH---HHhcCC--CeeEEEEecCCCeEEEEecCCHHHHHHHHHhcCCceEEc
Q 009466 11 TYVLKVN-IHCDGCKHKVKK---ILQKID--GVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELW 74 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIek---aL~kI~--GV~sv~Vnl~~gkVtV~g~v~peeIieaIekaG~~A~l~ 74 (534)
.+.|.+- -+|..|...+.. ...++. +|.-+.|+ .+.+.+++.+.+++.++...++
T Consensus 31 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~---------~d~~~~~~~~~~~~~~~~~~~~ 91 (152)
T 2lrn_A 31 YVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVS---------TDRREEDWKKAIEEDKSYWNQV 91 (152)
T ss_dssp EEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEE---------CCSCHHHHHHHHHHHTCCSEEE
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEE---------ccCCHHHHHHHHHHhCCCCeEE
Confidence 4445555 789999754432 222222 24333333 2235667777777666554433
No 104
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=21.21 E-value=2.4e+02 Score=23.12 Aligned_cols=55 Identities=9% Similarity=0.158 Sum_probs=38.2
Q ss_pred EEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecC------CCeEEEEecCCHHHHHHHHHh
Q 009466 11 TYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE------QGKVTVSGNVDPSVLIKKLAK 66 (534)
Q Consensus 11 tv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~------~gkVtV~g~v~peeIieaIek 66 (534)
..+|-|. |........|+..+.+.--|..+.|... .+.+.|+. .+.++..++|+.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~~~ 83 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY-ETYKEAQAAMEG 83 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEE-SSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEE-CCHHHHHHHHHH
Confidence 4566777 7777778889999999988988887544 33445553 356666666654
No 105
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=20.78 E-value=22 Score=33.30 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=2.6
Q ss_pred HHhcCCCe
Q 009466 30 ILQKIDGV 37 (534)
Q Consensus 30 aL~kI~GV 37 (534)
++.+.+.|
T Consensus 25 v~~~~~~v 32 (171)
T 1zyi_A 25 LRQQQPET 32 (171)
T ss_dssp --CBCSSE
T ss_pred eEEEcCCE
Confidence 33444444
No 106
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.60 E-value=1.4e+02 Score=23.52 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=38.0
Q ss_pred EEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCCeEEEEecCCHHHHHHHHHh
Q 009466 13 VLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAK 66 (534)
Q Consensus 13 ~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~gkVtV~g~v~peeIieaIek 66 (534)
+|-|. +.-......|++.+.+.-.|..+.+.....-+.|+.. +.++..++|+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~-~~~~a~~a~~~ 70 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLE-TRTLAEIAKVE 70 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECS-SSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEEC-CHHHHHHHHHH
Confidence 45566 7666667889999999888999998877777777743 44555555544
No 107
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.04 E-value=2.1e+02 Score=22.63 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=35.8
Q ss_pred eEEEEEEE-eccHHHHHHHHHHHhcCCCeeEEEEecCCC-------eEEEEecCCHHHHHHHH
Q 009466 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSEQG-------KVTVSGNVDPSVLIKKL 64 (534)
Q Consensus 10 qtv~LkV~-M~C~sC~~kIekaL~kI~GV~sv~Vnl~~g-------kVtV~g~v~peeIieaI 64 (534)
...+|-|. |.-......|+..+.... |.++.|-.... -+.|+. .+.++..++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f-~~~~~a~~A~ 74 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEF-EDLDSLLSAL 74 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEE-SSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEE-CCHHHHHHHH
Confidence 44566677 766666788999999885 98888764432 244443 4667777777
No 108
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=20.03 E-value=2.5e+02 Score=21.39 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=28.5
Q ss_pred EEEEEEeccHHHHHHHHHHHhcCCC-eeEEEEecCCCeEEE--Ee-c---CCHHHHHHHHHhcC
Q 009466 12 YVLKVNIHCDGCKHKVKKILQKIDG-VFTTSIDSEQGKVTV--SG-N---VDPSVLIKKLAKSG 68 (534)
Q Consensus 12 v~LkV~M~C~sC~~kIekaL~kI~G-V~sv~Vnl~~gkVtV--~g-~---v~peeIieaIekaG 68 (534)
+++.+. .-.....+|..+|.+... |.++++......+.+ +. . ...++|++.|++..
T Consensus 8 l~v~~~-Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~ 70 (88)
T 2ko1_A 8 IRIVGE-DKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQ 70 (88)
T ss_dssp EEEEEE-CCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCT
T ss_pred EEEEEE-CCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 334433 345566778888877755 666665533224332 21 1 23344555555443
Done!