Query 009467
Match_columns 534
No_of_seqs 388 out of 1520
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oss_A HUNK1 protein, bromodom 100.0 2E-28 6.9E-33 220.3 12.5 105 150-254 19-123 (127)
2 3g0l_A Hwalp4, bromodomain adj 100.0 3.2E-28 1.1E-32 215.8 12.8 104 151-256 12-115 (117)
3 2ouo_A HUNK1 protein, bromodom 100.0 1.9E-28 6.6E-33 221.2 11.5 108 148-255 18-128 (130)
4 2d9e_A Peregrin; four-helix bu 99.9 9.4E-28 3.2E-32 214.2 13.5 108 151-260 6-113 (121)
5 3d7c_A General control of amin 99.9 7.7E-28 2.6E-32 211.8 12.6 103 150-254 5-107 (112)
6 3p1f_A CREB-binding protein; s 99.9 1.1E-27 3.9E-32 212.9 13.4 108 151-258 10-118 (119)
7 3jvl_A Bromodomain-containing 99.9 4.1E-28 1.4E-32 216.1 9.7 107 149-255 6-115 (120)
8 3q2e_A Bromodomain and WD repe 99.9 1.9E-27 6.6E-32 212.7 13.5 107 151-259 9-116 (123)
9 1e6i_A Transcriptional activat 99.9 8.1E-28 2.8E-32 214.6 10.4 103 152-256 13-115 (121)
10 3mb3_A PH-interacting protein; 99.9 3E-27 1E-31 214.7 13.4 107 151-259 20-127 (135)
11 4alg_A Bromodomain-containing 99.9 2E-27 6.9E-32 220.5 12.3 106 150-255 30-135 (154)
12 2i7k_A Bromodomain-containing 99.9 4.5E-27 1.5E-31 208.6 13.0 103 150-254 6-108 (117)
13 3fkm_X Signaling protein; brom 99.9 3.5E-27 1.2E-31 221.5 12.6 107 149-255 18-124 (166)
14 2dat_A Possible global transcr 99.9 3.4E-27 1.2E-31 211.1 11.8 103 150-254 11-119 (123)
15 3nxb_A CAT eye syndrome critic 99.9 4.6E-27 1.6E-31 208.1 12.1 101 151-253 15-115 (116)
16 3rcw_A Bromodomain-containing 99.9 1.1E-26 3.7E-31 211.0 14.4 108 151-260 12-119 (135)
17 2grc_A Probable global transcr 99.9 7.1E-27 2.4E-31 210.7 12.5 105 151-257 10-121 (129)
18 3mqm_A Probable histone-lysine 99.9 1.3E-26 4.4E-31 208.1 13.6 110 151-262 8-123 (126)
19 3hme_A Bromodomain-containing 99.9 1.4E-26 4.9E-31 207.1 12.6 103 151-255 12-114 (123)
20 3mb4_A Protein polybromo-1; PB 99.9 9.4E-27 3.2E-31 208.5 11.1 104 150-255 13-122 (124)
21 2yyn_A Transcription intermedi 99.9 1.9E-26 6.4E-31 209.5 13.2 104 150-256 18-123 (135)
22 3ljw_A Protein polybromo-1; al 99.9 2E-26 6.8E-31 205.3 12.6 105 151-257 7-117 (120)
23 3iu5_A Protein polybromo-1; PB 99.9 1.9E-26 6.4E-31 204.2 12.2 103 152-256 5-113 (116)
24 3k2j_A Protein polybromo-1; PB 99.9 3.8E-26 1.3E-30 206.2 13.0 106 150-257 15-126 (130)
25 3uv4_A Second bromodomain of h 99.9 1.5E-25 5E-30 208.7 12.4 108 153-262 30-138 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 3.1E-25 1.1E-29 209.3 10.5 103 150-254 70-172 (174)
27 3tlp_A Protein polybromo-1; PB 99.9 4.9E-25 1.7E-29 203.6 11.3 104 152-257 24-134 (150)
28 3dai_A ATPase family AAA domai 99.9 2E-24 6.7E-29 195.0 13.1 100 151-252 9-112 (130)
29 3o36_A Transcription intermedi 99.9 2.2E-24 7.4E-29 205.6 12.2 104 149-255 78-183 (184)
30 3uv5_A Transcription initiatio 99.9 7.6E-24 2.6E-28 212.8 12.9 109 151-261 13-121 (265)
31 3uv5_A Transcription initiatio 99.9 6.5E-24 2.2E-28 213.3 11.6 109 152-262 136-245 (265)
32 2dkw_A Hypothetical protein KI 99.9 1.9E-23 6.4E-28 188.8 12.1 95 151-252 11-109 (131)
33 2ro1_A Transcription intermedi 99.9 5.8E-24 2E-28 203.6 9.0 100 150-256 74-178 (189)
34 3u5n_A E3 ubiquitin-protein li 99.9 2.5E-23 8.6E-28 201.8 12.5 105 148-255 77-201 (207)
35 3aad_A Transcription initiatio 99.9 4.7E-23 1.6E-27 209.8 12.0 107 151-259 46-152 (292)
36 3aad_A Transcription initiatio 99.9 3.7E-22 1.3E-26 203.1 13.2 104 156-261 173-277 (292)
37 2r0y_A Chromatin structure-rem 99.9 5E-22 1.7E-26 203.7 14.1 87 166-254 177-263 (311)
38 2r10_A Chromatin structure-rem 99.8 2.1E-21 7E-26 203.1 9.8 86 167-254 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 6.6E-20 2.3E-24 191.7 8.8 100 151-254 77-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.3E-19 4.3E-24 185.9 8.6 100 151-254 27-129 (311)
41 2jns_A Bromodomain-containing 99.7 3.7E-19 1.3E-23 150.4 3.6 72 350-421 12-84 (90)
42 3iu6_A Protein polybromo-1; PB 99.7 1.6E-17 5.4E-22 151.5 13.6 101 151-257 6-112 (147)
43 3lqh_A Histone-lysine N-methyl 99.5 5.6E-15 1.9E-19 140.2 8.1 96 151-259 74-169 (183)
44 2lm0_A AF4/FMR2 family member 95.9 0.037 1.3E-06 48.3 9.0 62 355-417 58-120 (125)
45 1td6_A F10_ORF294, hypothetica 52.1 3 0.0001 40.5 0.0 13 408-420 263-275 (306)
46 1gk7_A Vimentin; intermediate 25.3 75 0.0026 22.0 3.6 24 92-115 5-28 (39)
47 2x1l_A Methionyl-tRNA syntheta 24.2 18 0.00061 38.7 0.3 23 15-37 4-26 (524)
No 1
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=2e-28 Score=220.29 Aligned_cols=105 Identities=32% Similarity=0.564 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhc
Q 009467 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~Y 229 (534)
..++...|..||..|++|+.+|+|.+|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999986779999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009467 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (534)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (534)
|+++|.||.+|..|++.|++.|+.+
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998765
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=3.2e-28 Score=215.83 Aligned_cols=104 Identities=32% Similarity=0.520 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
...++.|..||..|+.|+.+|+|..||++.. +||||++|++||||+||++||++|.|.++++|..||+|||.||++||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009467 231 PKDHEVHIIAEQFLARFEELFRPINE 256 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (534)
++++.||.+|..|++.|++.|++++.
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998763
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=1.9e-28 Score=221.24 Aligned_cols=108 Identities=43% Similarity=0.712 Sum_probs=101.3
Q ss_pred cCcHHHHHHHHHHHHHHHcCCC---CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 009467 148 QDNGKLMKNCGQILTKLMKHKL---GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (534)
Q Consensus 148 ~~~~~~~k~c~~iL~~L~~~k~---s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~ 224 (534)
......++.|..||..|+.+++ +|+|..|||+..+++||||+||++||||+||++||++|.|.++.+|.+||+|||.
T Consensus 18 ~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~ 97 (130)
T 2ouo_A 18 SKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFS 97 (130)
T ss_dssp -CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3446788999999999999885 8999999999988899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009467 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (534)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (534)
||++||++++.||.+|..|++.|+..|+.+.
T Consensus 98 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 98 NCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999998653
No 4
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=9.4e-28 Score=214.19 Aligned_cols=108 Identities=27% Similarity=0.377 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
..+...|..||..|++++.+|+|.+||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4678999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009467 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQ 260 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (534)
++++.+|.+|..|++.|+.+|.++...+++
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887753
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=7.7e-28 Score=211.83 Aligned_cols=103 Identities=26% Similarity=0.411 Sum_probs=99.2
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhc
Q 009467 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~Y 229 (534)
...|...|..||..|++|+.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009467 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (534)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (534)
|++++.+|.+|..|++.|++.|+++
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998764
No 6
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=1.1e-27 Score=212.89 Aligned_cols=108 Identities=35% Similarity=0.551 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHc-CCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhc
Q 009467 151 GKLMKNCGQILTKLMK-HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~-~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~Y 229 (534)
.++++.|..+|..|++ ++.+|+|.+||++..+++||||++|++||||+||++||++|.|.++.+|..||+|||.||++|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998 679999999999987679999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009467 230 NPKDHEVHIIAEQFLARFEELFRPINEKL 258 (534)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 258 (534)
|+++|.||.+|..|++.|++.|..+...+
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887654
No 7
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=4.1e-28 Score=216.06 Aligned_cols=107 Identities=43% Similarity=0.718 Sum_probs=102.0
Q ss_pred CcHHHHHHHHHHHHHHHcCCC---CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 009467 149 DNGKLMKNCGQILTKLMKHKL---GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (534)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~k~---s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~N 225 (534)
...+++++|..||..|+.++. +|+|..||++..+++||||++|++||||+||++||++|.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999988 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009467 226 AMTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (534)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (534)
|++||++++.||.+|..|++.|++.|+.+.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999988664
No 8
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=212.67 Aligned_cols=107 Identities=35% Similarity=0.622 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
..|+++|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5699999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009467 231 PK-DHEVHIIAEQFLARFEELFRPINEKLM 259 (534)
Q Consensus 231 ~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (534)
++ ++.||.+|..|++.|++.|+.+...+.
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 999999999999999999999988774
No 9
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.95 E-value=8.1e-28 Score=214.57 Aligned_cols=103 Identities=35% Similarity=0.507 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcCC
Q 009467 152 KLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP 231 (534)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN~ 231 (534)
.+.+.|..||..|++|+.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 90 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNG 90 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 457899999999999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 009467 232 KDHEVHIIAEQFLARFEELFRPINE 256 (534)
Q Consensus 232 ~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (534)
+++.+|.+|..|++.|++.|+.+..
T Consensus 91 ~~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 91 ENTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999987743
No 10
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=3e-27 Score=214.67 Aligned_cols=107 Identities=31% Similarity=0.539 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
..|.+.|..||..|+.++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5699999999999999999999999999866 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009467 231 PK-DHEVHIIAEQFLARFEELFRPINEKLM 259 (534)
Q Consensus 231 ~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (534)
++ ++.||.+|..|++.|++.|..+...+.
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 127 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYK 127 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 999999999999999999999987774
No 11
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=2e-27 Score=220.49 Aligned_cols=106 Identities=29% Similarity=0.516 Sum_probs=101.1
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhc
Q 009467 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~Y 229 (534)
...+...|..||+.|++++.+|+|.+||++..+++||||+||++||||+||++||+++.|.++++|+.||+|||.||++|
T Consensus 30 t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~Y 109 (154)
T 4alg_A 30 TNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIY 109 (154)
T ss_dssp BHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 37788889999999999999999999999998789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009467 230 NPKDHEVHIIAEQFLARFEELFRPIN 255 (534)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (534)
|++++.||.+|..|+++|++.|+.+.
T Consensus 110 N~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 110 NKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999987653
No 12
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=4.5e-27 Score=208.59 Aligned_cols=103 Identities=26% Similarity=0.350 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhc
Q 009467 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~Y 229 (534)
...+.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999865 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009467 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (534)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (534)
|++++.+|.+|..|++.|+++|..+
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 13
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.5e-27 Score=221.49 Aligned_cols=107 Identities=33% Similarity=0.509 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhh
Q 009467 149 DNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 228 (534)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~ 228 (534)
....|.+.|..||..|++++.+++|..||++..+++||||+||++||||+||++||.+|.|.++.+|+.||+|||.||++
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSL 97 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009467 229 YNPKDHEVHIIAEQFLARFEELFRPIN 255 (534)
Q Consensus 229 YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (534)
||++++.||.+|..|+++|++.|+.+.
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 98 YNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999998763
No 14
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=3.4e-27 Score=211.08 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=97.7
Q ss_pred cHHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009467 150 NGKLMKNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k------~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif 223 (534)
...+.+.|..||+.|++++ .+|+|.+||+... +||||++|++||||+||++||++|.|.++++|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3779999999999999987 5899999999876 9999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009467 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPI 254 (534)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (534)
.||++||++++.||.+|..|++.|++.++++
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998754
No 15
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=4.6e-27 Score=208.09 Aligned_cols=101 Identities=27% Similarity=0.442 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
.++.+.|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++++|+.||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4488999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 009467 231 PKDHEVHIIAEQFLARFEELFRP 253 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~ 253 (534)
++++.||.+|..|++.|++.|..
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999863
No 16
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=211.02 Aligned_cols=108 Identities=26% Similarity=0.394 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
..+...|..||..|++|+.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 12 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYN 89 (135)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5699999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009467 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQ 260 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (534)
++++.+|.+|..|++.|+..|+.+...++.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~ 119 (135)
T 3rcw_A 90 ARDTVFYRAAVRLRDQGGVVLRQARREVDS 119 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877754
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=7.1e-27 Score=210.73 Aligned_cols=105 Identities=24% Similarity=0.374 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHcCC-------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009467 151 GKLMKNCGQILTKLMKHK-------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k-------~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif 223 (534)
..+.+.|..||..|++++ .+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 679999999999999886 4899999999776 9999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009467 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (534)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (534)
.||++||++++.||.+|..|++.|++.|+.+...
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999888654
No 18
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=208.11 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 009467 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~ 224 (534)
..+.+.|..|++.|++++. +|+|.+||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 6688999999999999764 999999999887 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009467 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQED 262 (534)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~~ 262 (534)
||++||++++.||.+|..|++.|++.|.++...++...
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i~ 123 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEIV 123 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998886543
No 19
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=207.07 Aligned_cols=103 Identities=31% Similarity=0.386 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
..+.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5688999999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 009467 231 PKDHEVHIIAEQFLARFEELFRPIN 255 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (534)
++++.||.+|..|++.|++.|.+..
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987553
No 20
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=9.4e-27 Score=208.49 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=97.8
Q ss_pred cHHHHHHHHHHHHHHHc------CCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009467 150 NGKLMKNCGQILTKLMK------HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~------~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif 223 (534)
...+.+.|..||+.|++ ++.+++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 36789999999999998 455799999999876 9999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009467 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (534)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (534)
.||++||++++.||.+|..|++.|++.|+++.
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 91 NNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998763
No 21
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=209.54 Aligned_cols=104 Identities=37% Similarity=0.652 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhhh
Q 009467 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK--NLYDSPASFAADVRLTFNNAM 227 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~--~~Y~s~~eF~~Dv~Lif~Na~ 227 (534)
....++.|..||..|++|+.+|+|..||+. .+||||++|++||||+||++||++ +.|.++.+|++||+|||.||+
T Consensus 18 ~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~ 94 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 94 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999997 399999999999999999999998 599999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009467 228 TYNPKDHEVHIIAEQFLARFEELFRPINE 256 (534)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (534)
+||++++.||.+|..|++.|+++|+++..
T Consensus 95 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 123 (135)
T 2yyn_A 95 EFNEPDSEVANAGIKLENYFEELLKNLYP 123 (135)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999887753
No 22
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=2e-26 Score=205.26 Aligned_cols=105 Identities=28% Similarity=0.344 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 009467 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~ 224 (534)
..|.+.|..||..|++++. +++|.+||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999887 999999999877 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009467 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (534)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (534)
||++||++++.||.+|..|++.|++.|+++..+
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999988754
No 23
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=204.21 Aligned_cols=103 Identities=23% Similarity=0.355 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 009467 152 KLMKNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (534)
Q Consensus 152 ~~~k~c~~iL~~L~~~k------~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~N 225 (534)
.++++|..||..|++++ .+++|.+||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999985 4999999999876 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009467 226 AMTYNPKDHEVHIIAEQFLARFEELFRPINE 256 (534)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (534)
|++||++++.||.+|..|++.|++.++++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988764
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=206.24 Aligned_cols=106 Identities=19% Similarity=0.284 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHHHHcCCC------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009467 150 NGKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTF 223 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif 223 (534)
...+..+|..+++.|.++.. +++|.+||+... +||||++|++||||+||++||++|.|.++.+|..||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 37799999999999998765 999999999876 9999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009467 224 NNAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (534)
Q Consensus 224 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (534)
.||++||++++.||.+|..|++.|++.|+++...
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988764
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=1.5e-25 Score=208.75 Aligned_cols=108 Identities=30% Similarity=0.460 Sum_probs=96.8
Q ss_pred HHHHHHHHHHH-HHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcCC
Q 009467 153 LMKNCGQILTK-LMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP 231 (534)
Q Consensus 153 ~~k~c~~iL~~-L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN~ 231 (534)
+...+..|+.. |+.++.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|+.||+|||.||++||+
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44444555543 666888999999999886 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009467 232 KDHEVHIIAEQFLARFEELFRPINEKLMQED 262 (534)
Q Consensus 232 ~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~~ 262 (534)
+++.||.+|..|.+.|+..|+++..++...+
T Consensus 108 ~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le 138 (158)
T 3uv4_A 108 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 138 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888776543
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=3.1e-25 Score=209.33 Aligned_cols=103 Identities=31% Similarity=0.528 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhc
Q 009467 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~Y 229 (534)
....++.|..||..|+.++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 70 ~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 147 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 147 (174)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36678899999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009467 230 NPKDHEVHIIAEQFLARFEELFRPI 254 (534)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i 254 (534)
|++++.||.+|..|+++|++.|+.+
T Consensus 148 N~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 148 NPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998754
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=203.56 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHcCCC-------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 009467 152 KLMKNCGQILTKLMKHKL-------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (534)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~-------s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~ 224 (534)
....+|..||..|+++.. +++|..||+... +||||++|++||||+||++||++|.|.++.+|+.||+|||.
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 446788888888887664 899999999876 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009467 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (534)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (534)
||++||++++.||.+|..|++.|++.|+++...
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999877543
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=2e-24 Score=194.97 Aligned_cols=100 Identities=27% Similarity=0.360 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
..+...|..+|..|+.++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYN 86 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5688899999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHH----HHHHHHHHHHHHHHHH
Q 009467 231 PKDHEV----HIIAEQFLARFEELFR 252 (534)
Q Consensus 231 ~~~s~v----~~~A~~L~~~Fe~~~~ 252 (534)
++++++ +.+|..|++.|..+++
T Consensus 87 ~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 87 PDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999876 6788888888887775
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=2.2e-24 Score=205.56 Aligned_cols=104 Identities=37% Similarity=0.639 Sum_probs=98.3
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhh
Q 009467 149 DNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK--NLYDSPASFAADVRLTFNNA 226 (534)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~--~~Y~s~~eF~~Dv~Lif~Na 226 (534)
....+++.|..||..|+.++.+++|..||+.. +|+||+||++||||+||++||++ |.|.++.+|++||+|||.||
T Consensus 78 l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na 154 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 154 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999853 89999999999999999999998 79999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009467 227 MTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (534)
Q Consensus 227 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (534)
++||++++.||.+|..|+++|+++|++++
T Consensus 155 ~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 155 AEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998763
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=7.6e-24 Score=212.84 Aligned_cols=109 Identities=29% Similarity=0.483 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
..|...|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|+.||+|||.||++||
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcC
Confidence 5789999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009467 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQE 261 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~ 261 (534)
++++.||.+|..|++.|++.|+++..++...
T Consensus 91 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ 121 (265)
T 3uv5_A 91 GPKHSLTQISQSMLDLCDEKLKEKEDKLARL 121 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999887766543
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=6.5e-24 Score=213.32 Aligned_cols=109 Identities=29% Similarity=0.454 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHH-HHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 152 KLMKNCGQILTK-LMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 152 ~~~k~c~~iL~~-L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
.+...|..++.. |+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 136 ~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN 213 (265)
T 3uv5_A 136 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 213 (265)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345556666654 788999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009467 231 PKDHEVHIIAEQFLARFEELFRPINEKLMQED 262 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~~ 262 (534)
+++|.||.+|..|+..|+..|+.+...+...+
T Consensus 214 ~~~s~~~~~A~~l~~~~~~~~~~~~~~~~~~e 245 (265)
T 3uv5_A 214 GPESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 245 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887775433
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=188.77 Aligned_cols=95 Identities=29% Similarity=0.459 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
.++...|..||..|+.++.+++|..| +||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN 83 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYN 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57889999999999999999999998 79999999999999999999999999999999999999999999999
Q ss_pred CCCCH----HHHHHHHHHHHHHHHHH
Q 009467 231 PKDHE----VHIIAEQFLARFEELFR 252 (534)
Q Consensus 231 ~~~s~----v~~~A~~L~~~Fe~~~~ 252 (534)
+++|+ |+.+|..|++.|...++
T Consensus 84 ~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 84 PDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99985 57899999998888764
No 33
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=5.8e-24 Score=203.58 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHHHHh
Q 009467 150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIK--NPMDLGTVKSKLSKN---LYDSPASFAADVRLTFN 224 (534)
Q Consensus 150 ~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk--~PMDL~tIk~KL~~~---~Y~s~~eF~~Dv~Lif~ 224 (534)
....+++|..||..|+.|+.+|+|.+||+ |+||+||+ +||||+||++||++| .|.++++|++||+|||+
T Consensus 74 ~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~ 147 (189)
T 2ro1_A 74 SPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFK 147 (189)
T ss_dssp CHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHH
Confidence 35667899999999999999999999998 57999998 899999999999999 99999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009467 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINE 256 (534)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (534)
||++|| +++.||.+|..|+++|+++|+++..
T Consensus 148 N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 148 QFNKLT-EDKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp HHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999 5899999999999999999988754
No 34
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=2.5e-23 Score=201.81 Aligned_cols=105 Identities=38% Similarity=0.590 Sum_probs=99.0
Q ss_pred cCcHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHh
Q 009467 148 QDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK---NLYDSPASFAADVRLTFN 224 (534)
Q Consensus 148 ~~~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~---~~Y~s~~eF~~Dv~Lif~ 224 (534)
.....+++.|..||..|+.++.+++|..||+. ++|+||+||++||||+||++||++ |.|.++.+|+.||+|||.
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~ 153 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFK 153 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHH
Confidence 34478899999999999999999999999986 399999999999999999999997 799999999999999999
Q ss_pred hhhhcCC-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Q 009467 225 NAMTYNP-----------------KDHEVHIIAEQFLARFEELFRPIN 255 (534)
Q Consensus 225 Na~~YN~-----------------~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (534)
||++||+ +++.|+.+|..|+.+|+.+|++++
T Consensus 154 Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 154 NCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999 999999999999999999998775
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.88 E-value=4.7e-23 Score=209.81 Aligned_cols=107 Identities=30% Similarity=0.496 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
..+...|..||..|+.++.+|+|..||++.. +||||+||++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHc
Confidence 4578899999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009467 231 PKDHEVHIIAEQFLARFEELFRPINEKLM 259 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (534)
++++.||.+|..|++.|++.|+.+..++.
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~~~~~~~ 152 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKEKEDKLA 152 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGGSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhhcchhhhh
Confidence 99999999999999999999988766553
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=203.15 Aligned_cols=104 Identities=31% Similarity=0.475 Sum_probs=94.8
Q ss_pred HHHHHH-HHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcCCCCC
Q 009467 156 NCGQIL-TKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 234 (534)
Q Consensus 156 ~c~~iL-~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN~~~s 234 (534)
.+..++ ..|+.++.+|+|..||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||++++
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344444 34788899999999999876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009467 235 EVHIIAEQFLARFEELFRPINEKLMQE 261 (534)
Q Consensus 235 ~v~~~A~~L~~~Fe~~~~~i~~~~~~~ 261 (534)
.||.+|..|++.|+..+..+..++...
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~~l~~l 277 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDEHLTQL 277 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988777543
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=5e-22 Score=203.71 Aligned_cols=87 Identities=31% Similarity=0.398 Sum_probs=83.5
Q ss_pred cCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHH
Q 009467 166 KHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLA 245 (534)
Q Consensus 166 ~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~ 245 (534)
.|+.+|+|.+||+... +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3567999999999886 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 009467 246 RFEELFRPI 254 (534)
Q Consensus 246 ~Fe~~~~~i 254 (534)
.|+.+|+.+
T Consensus 255 ~f~~~~~~~ 263 (311)
T 2r0y_A 255 YFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999873
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.84 E-value=2.1e-21 Score=203.13 Aligned_cols=86 Identities=30% Similarity=0.391 Sum_probs=83.1
Q ss_pred CCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHH
Q 009467 167 HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLAR 246 (534)
Q Consensus 167 ~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~ 246 (534)
|+.+|+|.+||+... +||||+||++||||+||++||++|.|.++.+|+.||+|||.||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567999999999886 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 009467 247 FEELFRPI 254 (534)
Q Consensus 247 Fe~~~~~i 254 (534)
|+.+|+.+
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=6.6e-20 Score=191.73 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHcCC--CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhhh
Q 009467 151 GKLMKNCGQILTKLMKHK--LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD-SPASFAADVRLTFNNAM 227 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k--~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~-s~~eF~~Dv~Lif~Na~ 227 (534)
..+...|..+|..|.+.. .+++|..||+... +||||+||++||||+||++|| +.|. ++++|+.||+|||.||+
T Consensus 77 ~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~ 152 (361)
T 2r10_A 77 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 152 (361)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHh
Confidence 446778999999987643 4899999999877 999999999999999999999 5555 89999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009467 228 TYNPKDHEVHIIAEQFLARFEELFRPI 254 (534)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (534)
+||++++.||.+|..|+++|+..|...
T Consensus 153 ~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 153 AYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988754
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.78 E-value=1.3e-19 Score=185.94 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHcCC--CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhhh
Q 009467 151 GKLMKNCGQILTKLMKHK--LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD-SPASFAADVRLTFNNAM 227 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k--~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~-s~~eF~~Dv~Lif~Na~ 227 (534)
..|...|..+|..+.+.- .+++|.+||+... +||||+||++||||+||++|| +.|. ++++|+.||+|||.||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 456777777777777633 4899999999877 999999999999999999999 5565 89999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009467 228 TYNPKDHEVHIIAEQFLARFEELFRPI 254 (534)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (534)
+||++++.||.+|..|+++|++.|.+.
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988765
No 41
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=3.7e-19 Score=150.42 Aligned_cols=72 Identities=40% Similarity=0.709 Sum_probs=67.6
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhcCCCCC-CCCceEEeCCCCCHHHHHHHHHHHHHHHH
Q 009467 350 DPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQ-DEDEIELDIEALDTETLWELDRFVTNYKK 421 (534)
Q Consensus 350 ~~~~r~mT~eEK~~Ls~~I~~Lp~ekl~~VIqIIk~~~p~~~~-~~dEIELDID~Ld~~TL~eL~rfV~~~~k 421 (534)
++.+++||++||++|+.+|+.||+++|.+||+||++++|.+.+ +++|||||||.|++.|||+|++||..|++
T Consensus 12 e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~ 84 (90)
T 2jns_A 12 EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLR 84 (90)
T ss_dssp TSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999874 68999999999999999999999999975
No 42
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=151.51 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 009467 151 GKLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFN 224 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~ 224 (534)
..+...+..|+..|+.++. +.+|.+.++.. |+||. ++||+|.+|++||..|.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3577888999999999875 78999988865 68998 999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009467 225 NAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (534)
Q Consensus 225 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (534)
||++||.+||.||.+|..|+++|.+.+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999887665
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.55 E-value=5.6e-15 Score=140.21 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhcC
Q 009467 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (534)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lif~Na~~YN 230 (534)
.++...+..||..|..++.+++|+. |. ++.||||.||++||+.|.|.++.+|..||+|||+||+.||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~-----------y~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLR-----------YR--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHT-----------CC--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhh-----------hh--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 5677778999999999999999976 22 5999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009467 231 PKDHEVHIIAEQFLARFEELFRPINEKLM 259 (534)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (534)
..++.+..++..|+.+|+++++.++.++.
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999988774
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=95.88 E-value=0.037 Score=48.26 Aligned_cols=62 Identities=18% Similarity=0.427 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHhcCCC-hhhHHHHHHHHHhhcCCCCCCCCceEEeCCCCCHHHHHHHHHHHH
Q 009467 355 EMSMEEKHKLGIGLQSLP-QEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVT 417 (534)
Q Consensus 355 ~mT~eEK~~Ls~~I~~Lp-~ekl~~VIqIIk~~~p~~~~~~dEIELDID~Ld~~TL~eL~rfV~ 417 (534)
.=-.+|-+.|...|-.|. .+.|.+||++|.+ .+++...+..+.+|+.+||..|+++|..|+.
T Consensus 58 ~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~-tG~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 58 KAYLDELVELHRRLMTLRERHILQQIVNLIEE-TGHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp CSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHT-SCCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHh-cCceeeecccccceeeccCHHHHHHHHHHHH
Confidence 345689999999999996 5559999999977 4666667889999999999999999999973
No 45
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=52.06 E-value=3 Score=40.49 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 009467 408 TLWELDRFVTNYK 420 (534)
Q Consensus 408 TL~eL~rfV~~~~ 420 (534)
--..+..||.+|.
T Consensus 263 LA~~I~QYv~n~~ 275 (306)
T 1td6_A 263 LAAKIYEYVSQIV 275 (306)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 3467888887764
No 46
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=25.30 E-value=75 Score=21.99 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 009467 92 KKELFELKNRLISELEQIRQLKNR 115 (534)
Q Consensus 92 ~~e~~~l~~Rl~~eLe~vr~l~~k 115 (534)
+.++..|-.||...+++||.|...
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~ 28 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQ 28 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999988653
No 47
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=24.21 E-value=18 Score=38.67 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=13.8
Q ss_pred CCccCCCCCcccccCCCCCCCCC
Q 009467 15 PMQTKGSGPKFMGKAPNPNPKKR 37 (534)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (534)
||||+||...|.+-.|-||||.+
T Consensus 4 ~~~~~~~~~~~~i~t~~P~~ng~ 26 (524)
T 2x1l_A 4 HHHHHGGSEPFYITTAIAYPNGV 26 (524)
T ss_dssp -------CCEEEEEECCBCCSSC
T ss_pred cccccCCCCCEEEeeCCCCCCCC
Confidence 35778888999999999999855
Done!