Query 009468
Match_columns 534
No_of_seqs 290 out of 1287
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:51:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 7.2E-46 2.5E-50 374.8 13.8 258 210-527 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 4.6E-41 1.6E-45 344.3 13.9 252 211-520 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 7.7E-27 2.6E-31 241.8 12.5 226 210-521 4-254 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 2.7E-25 9.4E-30 223.2 10.9 137 329-507 82-224 (263)
5 1o7q_A N-acetyllactosaminide a 68.9 53 0.0018 32.9 12.4 127 338-475 133-261 (289)
6 2lse_A Four helix bundle prote 38.2 9.7 0.00033 30.7 0.0 53 91-149 7-61 (101)
7 3pmr_A Amyloid-like protein 1; 21.2 1.3E+02 0.0044 28.9 5.6 30 134-163 66-95 (219)
8 1p68_A De novo designed protei 19.7 63 0.0021 26.0 2.6 15 91-105 59-73 (102)
9 3ioh_A Histo-blood group ABO s 19.6 6.7E+02 0.023 25.0 14.3 124 339-475 143-270 (298)
10 1dip_A Delta-sleep-inducing pe 17.7 1.6E+02 0.0053 23.6 4.4 41 139-182 17-57 (78)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=7.2e-46 Score=374.78 Aligned_cols=258 Identities=16% Similarity=0.200 Sum_probs=179.5
Q ss_pred cceEEEEeCCcch--hHHHHHHHHhcCCCCCceEEEEEeCCCCcccchhhhhhcccccceeeeecccccccccccchhHH
Q 009468 210 FHHVVLLTDNVLA--ASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 287 (534)
Q Consensus 210 ~ihIv~~sDn~la--~sVvI~Sil~Ns~~p~~i~FHIvtD~~~~~am~~Wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl 287 (534)
.+|||+++|+.+. ++|+|+|++.|+++ ++++|||++++++.+..+..-..-.-.+..|++.
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~---------------- 67 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPI---------------- 67 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEE----------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEE----------------
Confidence 5999999998653 99999999999986 6799999999998543211110000001111111
Q ss_pred HHHHHHHHHHHHhhccCcccccccchhhhhhhcc-cCCCccchhhHHHHhhccccC-CCCeEEEEecCeeeccCchHHhc
Q 009468 288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEV-LSPSCLSLMNHLRIYIPELFP-DLNKILFLDDDVVVQHDLSSLLE 365 (534)
Q Consensus 288 ~~le~~~~i~~~y~~~~~~~~~~~p~~~~~~l~~-~~~~~~S~~~y~Rf~IPeilP-~ldKVLYLD~DvVV~~DLseLw~ 365 (534)
.++ +. .++. ...+++|..+|+||++|+++| +++||||||+|+||++||++||+
T Consensus 68 --------------------~~~-~~----~~~~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~ 122 (276)
T 3tzt_A 68 --------------------RAT-DD----LFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLR 122 (276)
T ss_dssp --------------------ECC------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHT
T ss_pred --------------------EeC-HH----HHhcCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhh
Confidence 110 00 0111 123578999999999999999 69999999999999999999999
Q ss_pred cCCCCceEEEEecCCCCCCCCCccccccccCCCCccccCCCCCCCCccccceeeeehHHHHHhhHHHHHHHHHHHhccCC
Q 009468 366 LDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSG 445 (534)
Q Consensus 366 iDL~g~~igAV~d~~~~~~~~~~~~~~~~Lnfs~p~i~~~~~~~~~yfNsGVmLiDL~~WR~~nitek~~~~l~~~~~~~ 445 (534)
+|++|+++|||+||.... ..+.... .+++...+|||||||||||++||+.++++++++|++++.. .
T Consensus 123 ~dl~~~~~aav~d~~~~~----~~~~~~~---------~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~-~ 188 (276)
T 3tzt_A 123 TDISDYILAAASHTGKTD----MANNVNR---------IRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHM-N 188 (276)
T ss_dssp CCCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----
T ss_pred cCCCCCeEEEEEecccch----HHHHHHH---------hcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccc-c
Confidence 999999999999997531 0111111 1233445999999999999999999999999999988753 5
Q ss_pred CCcCCCCCCChhhhhcCCceEecCC-cccccccCCCch-hh-------hhhhcCCCEEEEccCCCCCCccCCCCccHHHH
Q 009468 446 LELWQPGALPPALLALDGNVHPIDP-SWHVAELGQRSL-EA-------HEETLKSAAVLHFSGPAKPWLEIGLPEVRGLW 516 (534)
Q Consensus 446 ~~~~DQd~LN~~ll~F~~~i~~Lp~-~WN~~~lgy~~~-~~-------~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W 516 (534)
+.++|||+|| ++|++++++||. +||+++ |+... .. ..+..++|+||||+|+.|||...+.++|+++|
T Consensus 189 ~~~~DQd~LN---~~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w 264 (276)
T 3tzt_A 189 LLLPDQDILN---AMYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLY 264 (276)
T ss_dssp -----CHHHH---HHHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHH
T ss_pred ccCCChhHHH---HHHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHH
Confidence 6789999999 579999999998 999986 32210 00 12345789999999999999999999999999
Q ss_pred HHHHcccchhh
Q 009468 517 SGHVNFSNKFI 527 (534)
Q Consensus 517 ~~Yl~~~~~~l 527 (534)
|+|++..+++|
T Consensus 265 ~~Y~~~~~~~~ 275 (276)
T 3tzt_A 265 KHYMSLTKRYL 275 (276)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999999987
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=4.6e-41 Score=344.31 Aligned_cols=252 Identities=19% Similarity=0.277 Sum_probs=184.2
Q ss_pred ceEEEEeCCcc--hhHHHHHHH-HhcCCCCCceEEEEEeCCCCcccchhhhhhcccccceeeeecccccccccccchhHH
Q 009468 211 HHVVLLTDNVL--AASVVVSST-VQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 287 (534)
Q Consensus 211 ihIv~~sDn~l--a~sVvI~Si-l~Ns~~p~~i~FHIvtD~~~~~am~~Wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl 287 (534)
||||+++|+.+ .++|+++|+ +.|++ .+++|||++|+++.+..+..-..-...+..|++
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~----------------- 61 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRF----------------- 61 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEE-----------------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEE-----------------
Confidence 69999999855 389999999 99874 469999999999864321111000000011111
Q ss_pred HHHHHHHHHHHHhhccCcccccccchhhhhhhcccCCCccchhhHHHHhhccccCCCCeEEEEecCeeeccCchHHhccC
Q 009468 288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELD 367 (534)
Q Consensus 288 ~~le~~~~i~~~y~~~~~~~~~~~p~~~~~~l~~~~~~~~S~~~y~Rf~IPeilP~ldKVLYLD~DvVV~~DLseLw~iD 367 (534)
..++ +..+. .+. ...+++|..+|+||++|++||+++||||||+|+||++||++||++|
T Consensus 62 -------------------~~~~-~~~~~-~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~ 119 (311)
T 1g9r_A 62 -------------------IDVN-PEDFA-GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTD 119 (311)
T ss_dssp -------------------EECC-GGGGT-TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCC
T ss_pred -------------------EEcC-HHHHh-cCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccC
Confidence 1111 00010 011 1246889999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCCCCCCccccccccCCCCccccCCCCCCCCccccceeeeehHHHHHhhHHHHHHHHHHHhccCCCC
Q 009468 368 LNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLE 447 (534)
Q Consensus 368 L~g~~igAV~d~~~~~~~~~~~~~~~~Lnfs~p~i~~~~~~~~~yfNsGVmLiDL~~WR~~nitek~~~~l~~~~~~~~~ 447 (534)
++|+++|||+||.... ...+...++ +++..+||||||||||+++||+.++++++++|++++.. ...
T Consensus 120 l~~~~~aav~d~~~~~----~~~~~~~~~---------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~-~~~ 185 (311)
T 1g9r_A 120 LGDNWLGASIDLFVER----QEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKD-VMQ 185 (311)
T ss_dssp CTTCSEEEEECHHHHT----STTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTT-TCS
T ss_pred CCCcEEEEEeccchhh----hHHHHHhcC---------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccC-cCc
Confidence 9999999999986320 112222332 44457899999999999999999999999999988753 577
Q ss_pred cCCCCCCChhhhhcCCceEecCCcccccccCCC---c--------hhh--hhhhcCCCEEEEccCCCCCCccCCCCccHH
Q 009468 448 LWQPGALPPALLALDGNVHPIDPSWHVAELGQR---S--------LEA--HEETLKSAAVLHFSGPAKPWLEIGLPEVRG 514 (534)
Q Consensus 448 ~~DQd~LN~~ll~F~~~i~~Lp~~WN~~~lgy~---~--------~~~--~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~ 514 (534)
+.|||+|| .+|.+++..||.+||++..++. . ... ..+..++++||||+|+.|||...+.+++.+
T Consensus 186 ~~DQd~lN---~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~ 262 (311)
T 1g9r_A 186 YQDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAE 262 (311)
T ss_dssp SHHHHHHH---HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTH
T ss_pred cCCcCHHH---HHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHH
Confidence 89999999 4799999999999999853210 0 000 112346889999999999999988888877
Q ss_pred HHHHHH
Q 009468 515 LWSGHV 520 (534)
Q Consensus 515 ~W~~Yl 520 (534)
+|..+.
T Consensus 263 ~~~~~~ 268 (311)
T 1g9r_A 263 RFTELA 268 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.94 E-value=7.7e-27 Score=241.77 Aligned_cols=226 Identities=17% Similarity=0.158 Sum_probs=149.7
Q ss_pred cceEEEEeCCcc-h-hHHHHHHHHhcCCCCCceEEEEEeCCCCcccchhhhhhcccccceeeeecccccccccccchhHH
Q 009468 210 FHHVVLLTDNVL-A-ASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 287 (534)
Q Consensus 210 ~ihIv~~sDn~l-a-~sVvI~Sil~Ns~~p~~i~FHIvtD~~~~~am~~Wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl 287 (534)
..+|++++|+.| . +.|++.|+..|+++ .++++ +++++++.+..+..-. ... .|..++..+.
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~---~~~---~v~~v~~l~~--------- 66 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEI---VFD---EVITVDILDS--------- 66 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHH---HCS---EEEECCTTST---------
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHH---hCC---EEEEEeecCC---------
Confidence 567888888744 3 88899999999865 45666 6777876543221111 110 1111111000
Q ss_pred HHHHHHHHHHHHhhccCcccccccchhhhhhhcccCCCccchhhHHHHhhccccCCCCeEEEEecCeeeccCchHHhccC
Q 009468 288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELD 367 (534)
Q Consensus 288 ~~le~~~~i~~~y~~~~~~~~~~~p~~~~~~l~~~~~~~~S~~~y~Rf~IPeilP~ldKVLYLD~DvVV~~DLseLw~iD 367 (534)
..+ ..+.... ...+..+|.||++|++ ++++||||||+|+||.+||++||+++
T Consensus 67 ----------------------~~~----~~~~~~~-~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~ 118 (333)
T 1ll2_A 67 ----------------------GDS----AHLTLMK-RPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE 118 (333)
T ss_dssp ----------------------TST----THHHHHH-CGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC
T ss_pred ----------------------cch----hhccccc-ccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC
Confidence 000 0010000 1123579999999996 78999999999999999999999986
Q ss_pred CCCceEEEEecCCCCCCCCCccccccccCCCCccccCCCCCCCCccccceeeeehHHHHHhhHHHHHHHHHHHhccCCCC
Q 009468 368 LNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLE 447 (534)
Q Consensus 368 L~g~~igAV~d~~~~~~~~~~~~~~~~Lnfs~p~i~~~~~~~~~yfNsGVmLiDL~~WR~~nitek~~~~l~~~~~~~~~ 447 (534)
.+|||+|.+ + .+||||||||||++. ...++++++++++. .+.
T Consensus 119 ----~~aAv~d~~----------------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~--~~~ 160 (333)
T 1ll2_A 119 ----ELSAAPDPG----------------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQG--SFD 160 (333)
T ss_dssp ----SSEEEECSS----------------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTC--CTT
T ss_pred ----ceeEEecCC----------------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcC--CCC
Confidence 478887742 1 158999999998753 34466777777653 467
Q ss_pred cCCCCCCChhhhhcCCce-----EecCCccccccc-CCCchhhhhhhcCCCEEEEccCCCCCCccCCCC-----------
Q 009468 448 LWQPGALPPALLALDGNV-----HPIDPSWHVAEL-GQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLP----------- 510 (534)
Q Consensus 448 ~~DQd~LN~~ll~F~~~i-----~~Lp~~WN~~~l-gy~~~~~~~~~i~~a~IIHy~G~~KPW~~~~~~----------- 510 (534)
++|||+||. +|.+.+ ..||.+||++.. +|..........++++||||+|..|||...+.+
T Consensus 161 ~~DQ~~LN~---~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~ 237 (333)
T 1ll2_A 161 GGDQGLLNT---FFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHD 237 (333)
T ss_dssp SSHHHHHHH---HTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC-----
T ss_pred CCCHHHHHH---HHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCcccccccccc
Confidence 899999995 676543 789999999853 232211012345789999999999999875321
Q ss_pred ------ccHHHHHHHHc
Q 009468 511 ------EVRGLWSGHVN 521 (534)
Q Consensus 511 ------~y~~~W~~Yl~ 521 (534)
++.+.||.+++
T Consensus 238 ~~~~~~~~~~~WW~~~~ 254 (333)
T 1ll2_A 238 PTMTHPQFLNVWWDIFT 254 (333)
T ss_dssp ---CCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 45778998865
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.92 E-value=2.7e-25 Score=223.21 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=108.6
Q ss_pred hhhHHHHhhccccCCCCeEEEEecCeeeccCchHHhccCCCCceEEEEecCCCCCCCCCccccccccCCCCccccCCCCC
Q 009468 329 LMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDH 408 (534)
Q Consensus 329 ~~~y~Rf~IPeilP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~~~~~~~Lnfs~p~i~~~~~~ 408 (534)
..+|.|+.++++. +++||||||+|++|.+||++||+++ .+|||.|.+.
T Consensus 82 ~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~--------------------------- 129 (263)
T 3u2u_A 82 GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW--------------------------- 129 (263)
T ss_dssp GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS---------------------------
T ss_pred hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEeccCCC---------------------------
Confidence 4688999999987 5999999999999999999999987 4788887421
Q ss_pred CCCccccceeeeehHHHHHhhHHHHHHHHHHHhccCCCCcCCCCCCChhhhhcCC-----ceEecCCcccccc-cCCCch
Q 009468 409 DHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDG-----NVHPIDPSWHVAE-LGQRSL 482 (534)
Q Consensus 409 ~~~yfNsGVmLiDL~~WR~~nitek~~~~l~~~~~~~~~~~DQd~LN~~ll~F~~-----~i~~Lp~~WN~~~-lgy~~~ 482 (534)
..||||||||||++. ++.++++++++++. .+.++|||+||. .|.+ .++.||..||++. ..|...
T Consensus 130 -~~~fNsGv~li~p~~----~~~~~l~~~~~~~~--~~~~~DQd~LN~---~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~ 199 (263)
T 3u2u_A 130 -PDCFNSGVFVYQPSV----ETYNQLLHLASEQG--SFDGGDQGILNT---FFSSWATTDIRKHLPFIYNLSSISIYSYL 199 (263)
T ss_dssp -TTSEEEEEEEECCCH----HHHHHHHHHHHHHC--CTTSSHHHHHHH---HTTTTTTSCGGGBCCGGGSEEHHHHHSSH
T ss_pred -CccccCeEEEEcccH----HHHHHHHHHHHhcC--CCCcccHHHHHH---HhccccccCeeEeCCcccccccchhcccc
Confidence 148999999999863 56777888887653 477899999995 6776 7899999999984 334322
Q ss_pred hhhhhhcCCCEEEEccCCCCCCccC
Q 009468 483 EAHEETLKSAAVLHFSGPAKPWLEI 507 (534)
Q Consensus 483 ~~~~~~i~~a~IIHy~G~~KPW~~~ 507 (534)
....+..++++||||+|+.|||...
T Consensus 200 ~~~~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 200 PAFKVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp HHHHHHGGGCSEEECCSSSCGGGSE
T ss_pred HHHHhhcCCeEEEEECCCCcCCCCC
Confidence 2112345789999999999999874
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=68.94 E-value=53 Score=32.87 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=73.9
Q ss_pred ccccCCCCeEEEEecCeeeccCchHHhccCCCCceEEEEecCCCCCCCCCccccccccCCCCccccCCCCCCCCccccce
Q 009468 338 PELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGM 417 (534)
Q Consensus 338 PeilP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~~~~~~~Lnfs~p~i~~~~~~~~~yfNsGV 417 (534)
.+++.++|-+.++|+|+++++++..= .| |..+|...--....... .-.|.+.- -|...| .++.+..|+.+|+
T Consensus 133 ~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~-~fpYERrp-~S~AyI--p~~eGdfYY~Ga~ 204 (289)
T 1o7q_A 133 AHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPN-DFTYERRK-ESAAYI--PFGEGDFYYHAAI 204 (289)
T ss_dssp HTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGG-GSCCCCCT-TSTTCC--CTTCCSCCEEEEE
T ss_pred HHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCCCC-CCCCCCCc-Cceeee--cCCCCCEEEEcee
Confidence 45566899999999999999998541 12 44666654322211000 00011100 111112 3566788999998
Q ss_pred eeeehHHHHHhhHHHHHHHHHHHhccCC--CCcCCCCCCChhhhhcCCceEecCCccccc
Q 009468 418 NVLDLEAWRRTNITATYHKWLKLNLKSG--LELWQPGALPPALLALDGNVHPIDPSWHVA 475 (534)
Q Consensus 418 mLiDL~~WR~~nitek~~~~l~~~~~~~--~~~~DQd~LN~~ll~F~~~i~~Lp~~WN~~ 475 (534)
+==-.++--+ +++.|.+-+.+-..++ -.+.|-.-||-.+ ..+...+.|++.|...
T Consensus 205 fGGt~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf-~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 205 FGGTPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNKYF-LLNKPTKILSPEYCWD 261 (289)
T ss_dssp EEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBC
T ss_pred eCCcHHHHHH--HHHHHHHHHHHHHhCCeEEEecchhhhhHHH-hhcCCCEEECHHHCCC
Confidence 8666665544 6777766654432222 2455777788753 3455678899998765
No 6
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.24 E-value=9.7 Score=30.69 Aligned_cols=53 Identities=30% Similarity=0.383 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHhc--cccCHHHHHHHHHHHHHHH
Q 009468 91 KLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTS--KRQDIKAFAFKTKAMLLKM 149 (534)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~kl~~~~~~~ 149 (534)
++.+.+.++|.|.++| .|+.+++ -++.+-...++ ..-|+++|+.|.|+-+.+|
T Consensus 7 klleklekildevtdg-apdeare-----rieklakdvkdeleegdaknmiekfrdemeqm 61 (101)
T 2lse_A 7 KLLEKLEKILDEVTDG-APDEARE-----RIEKLAKDVKDELEEGDAKNMIEKFRDEMEQM 61 (101)
Confidence 5777888888888877 3444442 23333333333 3468888888888655443
No 7
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=21.24 E-value=1.3e+02 Score=28.86 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009468 134 DIKAFAFKTKAMLLKMEHEVQSSRQRESIY 163 (534)
Q Consensus 134 ~~~~~~~kl~~~~~~~ee~~~~~~~~~~~~ 163 (534)
|-.+|.++..+++.++|++..+.|+|..-.
T Consensus 66 dkk~m~~rFQ~~v~aLE~E~~~ErqqL~et 95 (219)
T 3pmr_A 66 DRQALNEHFQSILQTLEEQVSGERQRLVET 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346889999999999999999988876543
No 8
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=19.72 E-value=63 Score=26.01 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhc
Q 009468 91 KLREELTRALIEAKD 105 (534)
Q Consensus 91 ~~~~~~~~~~~~~~~ 105 (534)
++|+|+++.|.|+++
T Consensus 59 emmkefqqvldelnn 73 (102)
T 1p68_A 59 EMMKEFQQVLDELNN 73 (102)
T ss_dssp HTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888888865
No 9
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=19.61 E-value=6.7e+02 Score=24.99 Aligned_cols=124 Identities=14% Similarity=0.167 Sum_probs=66.5
Q ss_pred cccCCCCeEEEEecCeeeccCchHHhccCCCCceEEEEecCCCCCCCCCcc--ccccccCCCCccccCCCCCCCCccccc
Q 009468 339 ELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGR--KYKDYLNFSYPIISSNFDHDHCAWLYG 416 (534)
Q Consensus 339 eilP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~igAV~d~~~~~~~~~~~--~~~~~Lnfs~p~i~~~~~~~~~yfNsG 416 (534)
.++.++|-+..+|.|+++++++.. + .| |..+|...--.-... .. .|.+.- -|...| .++.+..|+.+|
T Consensus 143 ~~~~EvDyLfc~dvd~~F~~~vG~--E-~L-g~lva~lHp~~y~~~---~~~FpYERrp-~S~AyI--p~~eGdfYY~ga 212 (298)
T 3ioh_A 143 RFLSEVDYLVCVDVDMEFRDHVGV--E-IL-TPLFGTLHPGFYGSS---REAFTYERRP-QSQAYI--PKDEGDFYYGGA 212 (298)
T ss_dssp THHHHCSEEEEEESSEEECSCBCG--G-GC-SSEEEEBCTTTTTSC---GGGSCCCCCT-TSTTCC--CTTCCSCCBCTT
T ss_pred HHhhcCCEEEEecCCCeeccCccH--H-Hh-HhhHhhcChhhhcCC---cccCcccCCc-cccccc--cCCCCCeEEeee
Confidence 345579999999999999998753 0 11 234444322111100 00 011000 011111 245667788888
Q ss_pred eeeeehHHHHHhhHHHHHHHHHHHhccCC--CCcCCCCCCChhhhhcCCceEecCCccccc
Q 009468 417 MNVLDLEAWRRTNITATYHKWLKLNLKSG--LELWQPGALPPALLALDGNVHPIDPSWHVA 475 (534)
Q Consensus 417 VmLiDL~~WR~~nitek~~~~l~~~~~~~--~~~~DQd~LN~~ll~F~~~i~~Lp~~WN~~ 475 (534)
++==-..+-.+ +++.|++-+.+-..++ -.+.|-.-||-.+ ..+.-++.|++.|+.-
T Consensus 213 ~fGGt~~~vl~--Lt~~C~~~i~~D~~n~IeA~WhDESHLNKYf-l~hKPtKvLSPEY~Wd 270 (298)
T 3ioh_A 213 FFGGSVQEVQR--LTRACHQAMMVDQANGIEAVWHDESHLNKYL-LRHKPTKVLSPEYLWD 270 (298)
T ss_dssp EEEEEHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBC
T ss_pred ecCCcHHHHHH--HHHHHHHHHHHHHhCCceEeccchhhhhhhh-hhcCCCceeCHHHcCC
Confidence 77544444333 5666665544332222 2455777788753 3455678899988754
No 10
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=17.73 E-value=1.6e+02 Score=23.59 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCCcccchhHHHH
Q 009468 139 AFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKL 182 (534)
Q Consensus 139 ~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl 182 (534)
+.-||..|..+||++.......++++++|+ |..+-=++.++
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~as---pEql~q~q~~l 57 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLAS---PEQLEKFQSRL 57 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHhcc
Confidence 346899999999999999999999999998 44444444444
Done!