Query 009469
Match_columns 534
No_of_seqs 600 out of 3092
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 05:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 4.9E-30 1.7E-34 267.6 31.6 276 204-494 23-329 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.9E-30 1E-34 270.2 26.1 287 203-492 24-322 (451)
3 2gfp_A EMRD, multidrug resista 99.9 1.3E-27 4.4E-32 244.5 13.9 262 210-489 3-264 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 5.6E-25 1.9E-29 233.1 23.6 277 215-493 21-352 (491)
5 4gc0_A D-xylose-proton symport 99.9 1.5E-23 5.2E-28 222.0 26.1 287 206-496 11-348 (491)
6 2cfq_A Lactose permease; trans 99.9 2.5E-21 8.7E-26 201.1 14.3 262 222-493 22-292 (417)
7 2xut_A Proton/peptide symporte 99.8 2.5E-19 8.7E-24 191.3 16.1 164 218-382 23-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 4.1E-14 1.4E-18 147.3 17.4 169 215-383 260-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 4.4E-12 1.5E-16 131.4 16.1 151 221-376 272-425 (438)
10 2cfq_A Lactose permease; trans 99.4 3.4E-12 1.2E-16 132.1 13.6 143 241-385 258-401 (417)
11 4gc0_A D-xylose-proton symport 99.2 4.3E-10 1.5E-14 118.3 20.7 182 209-390 279-469 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.2 7.4E-11 2.5E-15 124.3 13.4 159 227-386 303-474 (491)
13 2gfp_A EMRD, multidrug resista 98.9 3E-10 1E-14 115.2 2.2 151 216-369 208-362 (375)
14 2xut_A Proton/peptide symporte 98.7 2.2E-08 7.5E-13 106.2 8.7 143 243-385 336-504 (524)
15 2jln_A MHP1; hydantoin, transp 45.8 2E+02 0.0069 29.3 12.8 52 326-377 20-73 (501)
16 2g9p_A Antimicrobial peptide l 33.6 21 0.00073 19.3 1.5 14 261-274 2-15 (26)
17 4dve_A Biotin transporter BIOY 22.7 1.9E+02 0.0066 25.4 6.8 25 248-272 99-123 (198)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=4.9e-30 Score=267.61 Aligned_cols=276 Identities=14% Similarity=0.186 Sum_probs=236.1
Q ss_pred chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469 204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS 283 (534)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~ 283 (534)
++|..+..+++..+...+......+..|.+.+++|++..++|++.+++.++..++.+++|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 34666677777778888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---hhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q 009469 284 VATVLT---PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI-QK 359 (534)
Q Consensus 284 i~~~l~---~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~-~~ 359 (534)
++.+++ ++++ +++.+++.|++.|++.+...+...++++|++|+++|++++++.+.+..+|.+++|++++.+. +.
T Consensus 103 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 103 LGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998 7777 89999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred cC-------------------------chHHHHHHHHHHHHHHHHHHHhh-cCCCCCChhhhHHHHhhhhCCCccccccc
Q 009469 360 FG-------------------------WPSVFYSFGSLGSIWFALWLKKA-YSSPKEDPELRAEEKRHILGGSISKEAVS 413 (534)
Q Consensus 360 ~g-------------------------w~~~f~i~~~~~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (534)
.+ ||+.|++.+++.++..++.+... ++.+++.++ .+++...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------~~~~~~~ 247 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-------------DAKQGSF 247 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC-------------CSSTTSH
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc-------------cccccch
Confidence 54 99999888777766655544432 211111000 0111122
Q ss_pred cccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469 414 VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY-YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL 492 (534)
Q Consensus 414 ~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~-~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~ 492 (534)
..++++++++|.++...+..++..........++|.| +++.+|++..+++++.....++.++++++.|++.||+++|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 327 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3457788999999999999999888889999999999 888789999999999999999999999999999999999975
Q ss_pred hH
Q 009469 493 SI 494 (534)
Q Consensus 493 ~i 494 (534)
+.
T Consensus 328 ~~ 329 (438)
T 3o7q_A 328 LA 329 (438)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=2.9e-30 Score=270.19 Aligned_cols=287 Identities=16% Similarity=0.253 Sum_probs=240.8
Q ss_pred CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469 203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW 282 (534)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~ 282 (534)
+.+|..+..+++..+...+....+.+.+|.+.+++ .+..++|++.+++.++..++.+++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34577778888888888899999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh----hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469 283 SVATVLTPV----AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358 (534)
Q Consensus 283 ~i~~~l~~~----~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~ 358 (534)
+++.+++++ ++ +++.++++|++.|++.+...++..+++.|++|+++|++++++...+..+|.+++|++++++.+
T Consensus 103 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 103 AAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 77 788899999999999999999999999999999999999999999999999999999999989
Q ss_pred ccC-chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHh-----hhhCCCccccccccccHHHhhcchhHHHHHHH
Q 009469 359 KFG-WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR-----HILGGSISKEAVSVIPWKLILSKAPVWALIIS 432 (534)
Q Consensus 359 ~~g-w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~ 432 (534)
..| ||+.|++.+++.++..++.++..++.++.......++.. .......+........++.+++++.++.+.+.
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 260 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence 898 999999999888777766666666544322111000000 00000000111111124677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh--hcccc
Q 009469 433 HFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL--VSKGL 492 (534)
Q Consensus 433 ~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~--g~r~~ 492 (534)
.++..++...+..++|.|+++.+|++..+++++.+...++.+++.++.|++.||+ ++|+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 9999999999999999999988899999999999999999999999999999999 88764
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=1.3e-27 Score=244.50 Aligned_cols=262 Identities=14% Similarity=0.185 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH
Q 009469 210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT 289 (534)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~ 289 (534)
+++++..+...+....+.+.+|.+.+++|.+..+++++.+++.++..++.+++|+++||+|||+++.++.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 44556667777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 009469 290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF 369 (534)
Q Consensus 290 ~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~ 369 (534)
++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..|||+.|++.
T Consensus 83 ~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 83 VTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 9988 78999999999999999999999999999999999999999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469 370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT 449 (534)
Q Consensus 370 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~ 449 (534)
+++.++..++.....+++++++++. +....++++++++|.++...+..++..........++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV 224 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766554444444433221110 011234566888999999999999988899999999999
Q ss_pred HHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469 450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS 489 (534)
Q Consensus 450 ~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~ 489 (534)
|+++.+|+++.+.+.+.....++.+++.++.+++.||+++
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998889999999999999999999999999999999987
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=5.6e-25 Score=233.15 Aligned_cols=277 Identities=14% Similarity=0.127 Sum_probs=200.9
Q ss_pred HHHHHHhhhhHHHH-hHHHHHhh-----hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hCCchHHHHHHHHHHHHHH
Q 009469 215 AFLLCNMDRVNMSI-AILPMSKE-----FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATV 287 (534)
Q Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~-----~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~g~~~~~i~~~ 287 (534)
..+...+..+.+.. ..+++.++ +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 33444444444433 34445555 99999999999999999999999999999999 8999999999999999999
Q ss_pred HHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHH
Q 009469 288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE--RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV 365 (534)
Q Consensus 288 l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~--rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~ 365 (534)
++++++ +++.++++|++.|++.+...+...++++|++|+++ |+.++++++.+..+|..++|.+++.+.+..||++.
T Consensus 101 ~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 178 (491)
T 4aps_A 101 VLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA 178 (491)
T ss_dssp HHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999988 88899999999999999999999999999999988 77888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCC-----ChhhhHHHHhhhh--------------------CCCcccc----------
Q 009469 366 FYSFGSLGSIWFALWLKKAYSSPKE-----DPELRAEEKRHIL--------------------GGSISKE---------- 410 (534)
Q Consensus 366 f~i~~~~~~i~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------------~~~~~~~---------- 410 (534)
|++.++..++..++.+...++..++ ......++..+.. +......
T Consensus 179 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (491)
T 4aps_A 179 FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAI 258 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHH
Confidence 9998777666655554443321111 1100111111100 0000000
Q ss_pred -----------ccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHH
Q 009469 411 -----------AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 479 (534)
Q Consensus 411 -----------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i 479 (534)
...........+....+.+.+..++....+.....++|.|+.+..+.+....+.+.....++.+++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (491)
T 4aps_A 259 AIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPF 338 (491)
T ss_dssp HHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHH
Confidence 000000011111223455555555656666667778899999878888778888888999999999999
Q ss_pred HHHHHHHhhcccch
Q 009469 480 GGWIADTLVSKGLS 493 (534)
Q Consensus 480 ~g~l~dr~g~r~~~ 493 (534)
.+++.||++||+..
T Consensus 339 ~~~l~~r~~~r~~~ 352 (491)
T 4aps_A 339 FAWLWTAWKKNQPS 352 (491)
T ss_dssp HHHHHHHTTTC---
T ss_pred HHHHHHHHhccCCC
Confidence 99999999998653
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.92 E-value=1.5e-23 Score=221.99 Aligned_cols=287 Identities=18% Similarity=0.232 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCC--------CcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHH
Q 009469 206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNW--------NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF 277 (534)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~ 277 (534)
|.+.+++.++.++.+++...++.+++.+.++++. +..+.|++.+++.+|..++++++|+++||+|||+++++
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4455556667788888888888899998887743 23467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh------------------hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHH
Q 009469 278 GVIWWSVATVLTPV------------------AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY 339 (534)
Q Consensus 278 g~~~~~i~~~l~~~------------------~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~ 339 (534)
+.+++.++.+++++ ++ +++.++++|+++|+|.|+..+....+++|+.|+++|++..++.+
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~ 168 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ 168 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence 99999999999884 45 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccc--------CchHHHHHHHHHHHHHHHHHHHhhcCCCCC-----ChhhhHHHHhhhh---
Q 009469 340 SGMYLGSVTGLAVSPILIQKF--------GWPSVFYSFGSLGSIWFALWLKKAYSSPKE-----DPELRAEEKRHIL--- 403 (534)
Q Consensus 340 ~~~~lG~~igp~i~~~l~~~~--------gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~--- 403 (534)
.+..+|.++++.++..+.... +||+.+.+.++..++ .++..+..++.|+. +.+...+..+...
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 999999999999888776532 355555444444333 33333444544321 1000000000000
Q ss_pred -------C-CCccccccccccHHHhhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHH
Q 009469 404 -------G-GSISKEAVSVIPWKLILSKAPVWALIISH-FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA 474 (534)
Q Consensus 404 -------~-~~~~~~~~~~~~~~~ll~~~~~~~~~l~~-~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~i 474 (534)
. .....+..........++.+......... +....+.+.+..|.+.+.+. .+.+.........+..+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 326 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINL 326 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHH
Confidence 0 00000000111122233334443333333 33344456666677776666 68888888888888889999
Q ss_pred HHHHHHHHHHHHhhcccchHHH
Q 009469 475 VFANMGGWIADTLVSKGLSITA 496 (534)
Q Consensus 475 ig~~i~g~l~dr~g~r~~~i~~ 496 (534)
++.++.+++.||+|||+.++..
T Consensus 327 ~~~~~~~~l~dr~Grr~~~~~~ 348 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQIIG 348 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcchhccc
Confidence 9999999999999999866543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=2.5e-21 Score=201.14 Aligned_cols=262 Identities=13% Similarity=0.048 Sum_probs=171.4
Q ss_pred hhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHH---HHHhhhccCCh
Q 009469 222 DRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT---VLTPVAARIGL 297 (534)
Q Consensus 222 ~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~---~l~~~~~~~~~ 297 (534)
......+.+|. +.+++|+++.++|++.+++.++..++++++|+++||+|||++++++.++++++. +...+.... .
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 100 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL-Q 100 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33444455665 456689999999999999999999999999999999999999998888765532 111222100 0
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHhhhccC--CcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHH
Q 009469 298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV--SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI 375 (534)
Q Consensus 298 ~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~--~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i 375 (534)
..++..+++.|++.+..++.....+.++.++ ++++.+++.......+|..++|.+++++.+ .+|++.|++.++..++
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALI 179 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence 1123455666665555444444444444433 456777888888889999999999999886 5899999877666443
Q ss_pred HHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469 376 WFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL 455 (534)
Q Consensus 376 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~ 455 (534)
..++.+...+++++..+.. +. .....+......+++++++|.++.+.+..++....+.....++|.|+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (417)
T 2cfq_A 180 LAVLLFFAKTDAPSSATVA---NA-----VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF 251 (417)
T ss_dssp HHHHSCSSCCCCSCSSCSS---SS-----SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCcccccccccc---cc-----cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222222221110000 00 000011112234567888999888777666655566666677888887754
Q ss_pred CC---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469 456 KF---NLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS 493 (534)
Q Consensus 456 g~---s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~ 493 (534)
+. +....+++..+..++.+++.++.++++||+|+|+.+
T Consensus 252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l 292 (417)
T 2cfq_A 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 42 234456777777788889999999999999999753
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.80 E-value=2.5e-19 Score=191.25 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=140.3
Q ss_pred HHHhhhhHHHHhH-HHHHhhhC------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHHHHHHHHHHH
Q 009469 218 LCNMDRVNMSIAI-LPMSKEFN------WNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLT 289 (534)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~~~~g------~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~g~~~~~i~~~l~ 289 (534)
+..+..+.....+ +++.+++| ++..+++++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++
T Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (524)
T 2xut_A 23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL 102 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3333333344444 44677889 9999999999999999999999999999999 99999999999999999888
Q ss_pred hhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHH---HHHHHHHHHHHHHHHHHHhhcccCchHHH
Q 009469 290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAF---VYSGMYLGSVTGLAVSPILIQKFGWPSVF 366 (534)
Q Consensus 290 ~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi---~~~~~~lG~~igp~i~~~l~~~~gw~~~f 366 (534)
++++ .+++.+++.|++.|++.+...+...+++.|++|+++|+++.++ ++.+..+|.+++|.+++.+.+..||++.|
T Consensus 103 ~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 103 AIFE-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp HHTS-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred HHhc-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 8775 2578899999999999999999999999999999999877666 88999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009469 367 YSFGSLGSIWFALWLK 382 (534)
Q Consensus 367 ~i~~~~~~i~~i~~~~ 382 (534)
++.+++.++..++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 182 GIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888877665555444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=4.1e-14 Score=147.34 Aligned_cols=169 Identities=15% Similarity=0.093 Sum_probs=141.9
Q ss_pred HHHHHHhhhhHHHHhHHHHHhh-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--CCchHHHHHHHHHH-HHHHHHh
Q 009469 215 AFLLCNMDRVNMSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVLGFGVIWWS-VATVLTP 290 (534)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~--Grr~~l~~g~~~~~-i~~~l~~ 290 (534)
..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |+|+.+.++.++.. ++.+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3344444555556667776555 899999999999999999999999999999999 99999888877776 6777766
Q ss_pred hhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCchHHHHHH
Q 009469 291 VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFGWPSVFYSF 369 (534)
Q Consensus 291 ~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~l-G~~igp~i~~~l~~~~gw~~~f~i~ 369 (534)
+.+..+.+.+++..++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.+.+.+..||++.|++.
T Consensus 340 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 419 (451)
T 1pw4_A 340 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 419 (451)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 664336777888888999988888888899999999999999999999999999 9999999999999999999999988
Q ss_pred HHHHHHHHHHHHHh
Q 009469 370 GSLGSIWFALWLKK 383 (534)
Q Consensus 370 ~~~~~i~~i~~~~~ 383 (534)
+++.++..++.+..
T Consensus 420 ~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 420 IGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88877766665554
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.38 E-value=4.4e-12 Score=131.40 Aligned_cols=151 Identities=10% Similarity=0.028 Sum_probs=122.8
Q ss_pred hhhhHHHHhHHHH-H-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChH
Q 009469 221 MDRVNMSIAILPM-S-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298 (534)
Q Consensus 221 ~~~~~~~~~~~~~-~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~ 298 (534)
.....+....|.+ . +.+|.+..+.+++.++..++..++.++.|+++||+|||+++.++.++.+++.++..+.+ +.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 349 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHV 349 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--HHH
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--CcH
Confidence 3334444455554 4 44599999999999999999999999999999999999999999999988888887776 444
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHH
Q 009469 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIW 376 (534)
Q Consensus 299 ~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i~~~~~~i~ 376 (534)
.+ +.-++.|++.+...+...++..+.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++.++..++.
T Consensus 350 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 350 GL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 43 3447888999999999999999999765 888888877 566999999999999999998 999888765544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=3.4e-12 Score=132.10 Aligned_cols=143 Identities=9% Similarity=0.038 Sum_probs=119.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHH
Q 009469 241 STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 320 (534)
Q Consensus 241 ~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 320 (534)
...++++.++..++..++.++.|+++||+|||+++.++.++.+++.++.++.+ +.+.+++..++.+++.+...+....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888888899999999999999999999999888888877777666 6677777777788877766777789
Q ss_pred HHhhhccCCcchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhc
Q 009469 321 MLSKWIPVSERSRSLAF-VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY 385 (534)
Q Consensus 321 ~i~~~~~~~~rg~~~gi-~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 385 (534)
+++|.+|++.|+++.++ ++....+|..++|.++|++.+..|+...|.+.+++.++..++.+...+
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999 477888999999999999999888888888888777766665544444
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.23 E-value=4.3e-10 Score=118.35 Aligned_cols=182 Identities=15% Similarity=0.066 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH
Q 009469 209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL 288 (534)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l 288 (534)
........+......+.+....+.+.+..+.+.........+..+...++.++.+++.||+|||+.++.+.....++.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence 33334444444455556666777788888888888888888888899999999999999999999999998888887766
Q ss_pred Hhhhc--cCChHHHHHHHHHHhh-cccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc------c
Q 009469 289 TPVAA--RIGLPFLLIMRAFMGI-GEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ------K 359 (534)
Q Consensus 289 ~~~~~--~~~~~~ll~~r~l~Gi-g~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~------~ 359 (534)
.+... .......++.-++... ......+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+ .
T Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~ 438 (491)
T 4gc0_A 359 LGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH 438 (491)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55432 1122222222222222 1223346678899999999999999999999999999999888776654 3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009469 360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKE 390 (534)
Q Consensus 360 ~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~ 390 (534)
.++.+.|++.++++++..++.+++.||++.+
T Consensus 439 ~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 439 FHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 4677788999998888888888888876544
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.20 E-value=7.4e-11 Score=124.29 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=122.7
Q ss_pred HHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH-----HHHHHHHHHHHHHhhhc-------
Q 009469 227 SIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG-----FGVIWWSVATVLTPVAA------- 293 (534)
Q Consensus 227 ~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-----~g~~~~~i~~~l~~~~~------- 293 (534)
...++.+ .+.++.+....+++.+...++..++.++.|++.||+|||+... ++.++.+++.++..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3334443 4456777678888889999999999999999999999987655 77777777766665532
Q ss_pred cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 009469 294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLG 373 (534)
Q Consensus 294 ~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~ 373 (534)
..+.+.+++.-++.|++.+...+....++.|.+|+++|++++|+......+|..++|.+.+.+.+ .++.+.|++.+++.
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~ 461 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGS 461 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH
Confidence 12566677788899999999889999999999999999999999999999999999999888765 46777888888777
Q ss_pred HHHHHHHHHhhcC
Q 009469 374 SIWFALWLKKAYS 386 (534)
Q Consensus 374 ~i~~i~~~~~~~~ 386 (534)
++..++.+...++
T Consensus 462 ~~~~~~~~~~~~~ 474 (491)
T 4aps_A 462 VVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHH
Confidence 7766666555443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.90 E-value=3e-10 Score=115.17 Aligned_cols=151 Identities=14% Similarity=0.016 Sum_probs=112.9
Q ss_pred HHHHHhhhhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHH-HHHHHH--HHhh
Q 009469 216 FLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIW-WSVATV--LTPV 291 (534)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~-~~i~~~--l~~~ 291 (534)
.++.......+....|.+ .+.+|.++.+.+++.+...++..++.++.+++.||+|++ +..+..+ ...+.. ....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 344444445555566665 445899999999999999999999999999999999883 2333332 222222 1222
Q ss_pred hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 009469 292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF 369 (534)
Q Consensus 292 ~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~ 369 (534)
....+.+.+++..++.|++.+...+...+++.|.+| ++|++++|+.+....+|..++|.+.+.+.+..+|...+++.
T Consensus 286 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 286 FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 111145667777888899999889999999999997 89999999999999999999999999998877777666653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.70 E-value=2.2e-08 Score=106.24 Aligned_cols=143 Identities=10% Similarity=0.093 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----hhhCCc----hHHHHHHHHHHHHHHHHhhhc-------cCChHHHHHHHHHH
Q 009469 243 TVGLIQSSFFWGYLLTQIVGGIWA----DKFGGK----PVLGFGVIWWSVATVLTPVAA-------RIGLPFLLIMRAFM 307 (534)
Q Consensus 243 ~~g~i~s~~~l~~~~~~~~~G~l~----Dr~Grr----~~l~~g~~~~~i~~~l~~~~~-------~~~~~~ll~~r~l~ 307 (534)
..+++.....++..++.++.+++. +|.|+| +.+.++.++.+++.++.++.. ..+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666666677777766654 555432 456677788887777766642 12566677788999
Q ss_pred hhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc--Cc---------hHHHHHHHHHHHHH
Q 009469 308 GIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--GW---------PSVFYSFGSLGSIW 376 (534)
Q Consensus 308 Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~--gw---------~~~f~i~~~~~~i~ 376 (534)
|++.+...+...+++.+.+|+++||+++|+++....+|..++|.+.+.+.+.. +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988742 23 33366666666655
Q ss_pred HHHHHHhhc
Q 009469 377 FALWLKKAY 385 (534)
Q Consensus 377 ~i~~~~~~~ 385 (534)
.++.+...+
T Consensus 496 ~~~~~~~~~ 504 (524)
T 2xut_A 496 AIVFALYAR 504 (524)
T ss_dssp HHHHC----
T ss_pred HHHHHHHHH
Confidence 555444433
No 15
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=45.79 E-value=2e+02 Score=29.29 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=24.3
Q ss_pred ccCCcc-hhHHHHHHHHHHHHHHHHHH-HHHHhhcccCchHHHHHHHHHHHHHH
Q 009469 326 IPVSER-SRSLAFVYSGMYLGSVTGLA-VSPILIQKFGWPSVFYSFGSLGSIWF 377 (534)
Q Consensus 326 ~~~~~r-g~~~gi~~~~~~lG~~igp~-i~~~l~~~~gw~~~f~i~~~~~~i~~ 377 (534)
.|+++| .....++....+....++.. +++.+....+|.+.++...+-.++..
T Consensus 20 vp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~ 73 (501)
T 2jln_A 20 TRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAV 73 (501)
T ss_dssp CCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHH
Confidence 455666 44455544433333333333 33334444566666654444444333
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.56 E-value=21 Score=19.32 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=11.5
Q ss_pred HHHHHHhhhCCchH
Q 009469 261 VGGIWADKFGGKPV 274 (534)
Q Consensus 261 ~~G~l~Dr~Grr~~ 274 (534)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.70 E-value=1.9e+02 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCc
Q 009469 248 QSSFFWGYLLTQIVGGIWADKFGGK 272 (534)
Q Consensus 248 ~s~~~l~~~~~~~~~G~l~Dr~Grr 272 (534)
..-|.+++.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888889999999999997643
Done!