Query 009470
Match_columns 534
No_of_seqs 799 out of 3097
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 13:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8.7E-61 1.9E-65 509.1 56.5 414 112-533 373-789 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.2E-60 7E-65 504.8 58.2 403 125-533 419-847 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-56 2.6E-61 474.8 47.1 401 107-527 121-523 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.2E-55 2.6E-60 467.1 49.4 407 106-533 155-563 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.5E-54 5.3E-59 467.8 46.8 315 126-452 135-449 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 3E-53 6.5E-58 459.3 46.9 385 127-524 237-651 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-26 1.3E-30 250.6 51.8 386 126-525 513-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-25 1.1E-29 243.3 53.7 390 126-529 479-868 (899)
9 PRK11788 tetratricopeptide rep 99.9 3.1E-22 6.7E-27 198.9 37.1 297 230-533 47-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 2.2E-21 4.9E-26 192.8 37.4 301 156-462 43-353 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 3.2E-20 6.9E-25 176.9 34.9 366 147-528 115-486 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-18 2.8E-23 182.2 50.4 400 118-528 133-572 (615)
13 PRK15174 Vi polysaccharide exp 99.9 3.7E-19 7.9E-24 185.8 45.7 329 154-491 48-381 (656)
14 PRK11447 cellulose synthase su 99.9 1.1E-18 2.4E-23 194.6 51.8 394 125-531 282-745 (1157)
15 PRK11447 cellulose synthase su 99.9 5E-18 1.1E-22 189.3 53.6 368 153-528 274-701 (1157)
16 PRK15174 Vi polysaccharide exp 99.9 9.4E-19 2E-23 182.8 44.8 360 159-528 16-382 (656)
17 TIGR00990 3a0801s09 mitochondr 99.9 2E-17 4.3E-22 173.3 51.6 360 123-492 171-572 (615)
18 PRK10049 pgaA outer membrane p 99.9 1.8E-17 3.9E-22 176.8 50.7 409 104-527 10-456 (765)
19 KOG4626 O-linked N-acetylgluco 99.9 1.2E-18 2.6E-23 166.2 34.0 385 108-508 112-500 (966)
20 PRK10049 pgaA outer membrane p 99.8 1.2E-16 2.6E-21 170.6 44.1 375 144-528 11-423 (765)
21 PRK14574 hmsH outer membrane p 99.8 2.5E-15 5.3E-20 157.7 49.8 393 125-527 47-513 (822)
22 PRK14574 hmsH outer membrane p 99.8 2E-14 4.2E-19 151.0 48.3 375 146-527 32-479 (822)
23 KOG4422 Uncharacterized conser 99.8 3.2E-14 6.9E-19 130.8 39.0 397 127-530 130-593 (625)
24 PRK09782 bacteriophage N4 rece 99.8 1.8E-13 3.8E-18 146.9 50.8 218 301-528 490-707 (987)
25 KOG4422 Uncharacterized conser 99.8 4.6E-14 9.9E-19 129.8 37.3 373 149-529 117-553 (625)
26 PRK09782 bacteriophage N4 rece 99.8 2.5E-13 5.3E-18 145.7 48.5 355 160-528 354-741 (987)
27 KOG2002 TPR-containing nuclear 99.7 2.5E-14 5.4E-19 144.2 37.4 423 97-527 218-745 (1018)
28 KOG2002 TPR-containing nuclear 99.7 3.9E-13 8.6E-18 135.7 38.6 394 127-529 214-711 (1018)
29 PRK10747 putative protoheme IX 99.7 2.4E-13 5.1E-18 134.2 36.8 285 231-527 97-390 (398)
30 KOG2003 TPR repeat-containing 99.7 3.6E-14 7.8E-19 131.3 27.9 389 128-526 217-688 (840)
31 TIGR00540 hemY_coli hemY prote 99.7 3.3E-13 7.2E-18 133.9 35.5 289 230-526 96-398 (409)
32 KOG2076 RNA polymerase III tra 99.7 2.6E-12 5.7E-17 129.0 40.3 361 162-526 153-554 (895)
33 PRK10747 putative protoheme IX 99.7 1.1E-12 2.3E-17 129.6 36.2 290 161-489 97-388 (398)
34 KOG2076 RNA polymerase III tra 99.7 2.3E-12 4.9E-17 129.5 37.8 329 192-525 148-510 (895)
35 TIGR00540 hemY_coli hemY prote 99.7 1.3E-12 2.9E-17 129.6 36.2 132 356-490 262-398 (409)
36 PF13429 TPR_15: Tetratricopep 99.7 7.5E-16 1.6E-20 145.3 12.2 262 257-526 13-276 (280)
37 PF13429 TPR_15: Tetratricopep 99.6 4.1E-15 9E-20 140.2 13.9 261 153-419 13-275 (280)
38 COG2956 Predicted N-acetylgluc 99.6 4.2E-12 9.1E-17 113.1 30.8 289 196-491 48-347 (389)
39 KOG0495 HAT repeat protein [RN 99.6 2.6E-10 5.6E-15 110.8 44.4 349 128-485 422-776 (913)
40 KOG1915 Cell cycle control pro 99.6 1.7E-10 3.7E-15 108.0 40.7 391 126-528 87-537 (677)
41 KOG0495 HAT repeat protein [RN 99.6 2.6E-10 5.5E-15 110.8 43.0 362 150-527 518-880 (913)
42 COG2956 Predicted N-acetylgluc 99.6 9.1E-12 2E-16 111.0 30.7 290 231-530 48-350 (389)
43 KOG2003 TPR repeat-containing 99.6 1.5E-11 3.3E-16 114.1 33.4 377 127-513 252-709 (840)
44 KOG1155 Anaphase-promoting com 99.6 6.5E-11 1.4E-15 110.5 37.5 330 180-526 161-494 (559)
45 KOG1126 DNA-binding cell divis 99.6 1E-12 2.2E-17 128.0 26.3 283 198-490 334-619 (638)
46 KOG1126 DNA-binding cell divis 99.6 9.9E-13 2.1E-17 128.1 25.7 287 233-529 334-622 (638)
47 COG3071 HemY Uncharacterized e 99.6 3.8E-11 8.3E-16 110.4 34.3 293 196-527 97-390 (400)
48 KOG0547 Translocase of outer m 99.6 1.3E-10 2.7E-15 109.3 36.1 388 125-526 128-565 (606)
49 KOG1155 Anaphase-promoting com 99.6 1.8E-10 3.8E-15 107.7 36.5 288 193-489 237-534 (559)
50 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.7E-15 107.1 33.8 295 151-454 85-388 (400)
51 PRK12370 invasion protein regu 99.5 2E-10 4.3E-15 118.5 32.6 251 267-528 276-536 (553)
52 PRK12370 invasion protein regu 99.4 3.4E-10 7.4E-15 116.8 32.5 268 181-457 254-536 (553)
53 TIGR02521 type_IV_pilW type IV 99.4 1.9E-10 4.2E-15 105.2 27.7 197 184-383 32-229 (234)
54 KOG1156 N-terminal acetyltrans 99.4 1.3E-08 2.9E-13 99.3 38.3 390 125-529 20-470 (700)
55 TIGR02521 type_IV_pilW type IV 99.4 4.3E-10 9.3E-15 102.9 27.2 199 253-455 32-231 (234)
56 KOG1915 Cell cycle control pro 99.4 2.3E-08 5E-13 94.0 37.5 369 148-528 73-501 (677)
57 PF12569 NARP1: NMDA receptor- 99.4 2E-09 4.4E-14 107.5 32.9 130 359-490 196-333 (517)
58 KOG1174 Anaphase-promoting com 99.4 5.4E-08 1.2E-12 90.1 38.9 368 147-528 96-501 (564)
59 KOG0547 Translocase of outer m 99.4 1.2E-09 2.5E-14 103.0 28.7 355 150-528 117-533 (606)
60 KOG1173 Anaphase-promoting com 99.4 4.7E-09 1E-13 100.8 32.8 288 214-509 240-533 (611)
61 KOG4318 Bicoid mRNA stability 99.4 1.4E-10 3E-15 116.4 23.0 273 170-477 12-286 (1088)
62 PF12569 NARP1: NMDA receptor- 99.4 1.1E-08 2.3E-13 102.3 36.2 298 149-455 5-333 (517)
63 KOG1129 TPR repeat-containing 99.3 2.1E-10 4.6E-15 102.5 20.5 227 257-490 228-457 (478)
64 KOG1129 TPR repeat-containing 99.3 2.3E-10 5E-15 102.2 19.0 229 187-420 227-457 (478)
65 KOG4318 Bicoid mRNA stability 99.3 2E-10 4.3E-15 115.2 20.2 279 204-518 11-291 (1088)
66 KOG1840 Kinesin light chain [C 99.3 2.7E-09 5.9E-14 105.3 27.3 198 328-525 247-477 (508)
67 KOG1174 Anaphase-promoting com 99.3 2.1E-08 4.5E-13 92.8 30.3 296 192-498 205-504 (564)
68 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.5E-16 82.3 6.6 49 250-298 1-49 (50)
69 KOG1840 Kinesin light chain [C 99.3 3.8E-09 8.3E-14 104.3 26.0 242 248-489 195-477 (508)
70 KOG1173 Anaphase-promoting com 99.3 1.2E-08 2.5E-13 98.2 28.2 284 181-473 242-533 (611)
71 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.6E-16 81.5 6.5 50 285-334 1-50 (50)
72 cd05804 StaR_like StaR_like; a 99.2 1.3E-07 2.9E-12 92.7 35.1 302 185-490 8-335 (355)
73 cd05804 StaR_like StaR_like; a 99.2 1.3E-07 2.8E-12 92.7 34.7 306 218-528 6-337 (355)
74 KOG2047 mRNA splicing factor [ 99.2 5.3E-07 1.1E-11 88.2 36.8 375 148-531 102-582 (835)
75 KOG2376 Signal recognition par 99.2 1.6E-06 3.4E-11 84.3 39.5 395 114-524 14-517 (652)
76 KOG4340 Uncharacterized conser 99.2 1.5E-08 3.3E-13 89.7 22.8 292 150-452 12-335 (459)
77 COG3063 PilF Tfp pilus assembl 99.2 4.9E-08 1.1E-12 83.7 24.7 197 186-385 38-235 (250)
78 COG3063 PilF Tfp pilus assembl 99.2 6.3E-08 1.4E-12 83.1 25.3 208 289-503 37-245 (250)
79 PRK04841 transcriptional regul 99.2 4.1E-07 8.9E-12 100.9 39.7 378 149-528 342-761 (903)
80 KOG1156 N-terminal acetyltrans 99.2 1.9E-06 4.1E-11 84.6 38.4 367 147-524 74-508 (700)
81 PRK11189 lipoprotein NlpI; Pro 99.2 4.9E-08 1.1E-12 92.4 27.2 95 221-316 67-161 (296)
82 PRK11189 lipoprotein NlpI; Pro 99.2 4.7E-08 1E-12 92.5 26.8 218 162-387 40-266 (296)
83 KOG2047 mRNA splicing factor [ 99.1 4.9E-06 1.1E-10 81.6 39.7 372 147-526 168-614 (835)
84 KOG4162 Predicted calmodulin-b 99.1 1E-06 2.2E-11 88.2 35.6 378 144-528 319-784 (799)
85 KOG3785 Uncharacterized conser 99.1 7E-07 1.5E-11 81.2 30.9 385 127-531 37-494 (557)
86 KOG0548 Molecular co-chaperone 99.1 8.2E-07 1.8E-11 85.4 32.0 356 123-490 13-454 (539)
87 KOG2376 Signal recognition par 99.1 7.1E-06 1.5E-10 79.9 36.5 368 150-527 14-487 (652)
88 KOG0624 dsRNA-activated protei 99.0 8.8E-06 1.9E-10 74.0 34.3 309 106-422 32-371 (504)
89 KOG0548 Molecular co-chaperone 99.0 5.4E-06 1.2E-10 79.9 34.8 366 94-474 18-471 (539)
90 KOG4340 Uncharacterized conser 99.0 1.3E-06 2.7E-11 77.8 27.7 398 109-527 10-443 (459)
91 KOG3785 Uncharacterized conser 99.0 6E-06 1.3E-10 75.3 32.2 385 124-533 69-520 (557)
92 PRK04841 transcriptional regul 99.0 3E-06 6.5E-11 94.0 37.1 336 157-492 383-761 (903)
93 KOG0624 dsRNA-activated protei 99.0 4.6E-06 9.9E-11 75.8 29.6 313 171-491 26-370 (504)
94 PF04733 Coatomer_E: Coatomer 98.9 2.3E-08 4.9E-13 93.3 14.9 255 226-499 9-270 (290)
95 PF04733 Coatomer_E: Coatomer 98.9 6.5E-08 1.4E-12 90.3 17.3 149 296-455 111-264 (290)
96 KOG4162 Predicted calmodulin-b 98.9 2.9E-05 6.3E-10 78.1 35.5 346 177-529 317-751 (799)
97 KOG0985 Vesicle coat protein c 98.9 2.9E-05 6.3E-10 80.0 35.7 332 106-489 949-1306(1666)
98 KOG3617 WD40 and TPR repeat-co 98.8 7E-06 1.5E-10 82.6 28.1 240 147-419 725-994 (1416)
99 KOG1128 Uncharacterized conser 98.8 5E-07 1.1E-11 89.8 20.0 239 249-508 395-633 (777)
100 KOG0985 Vesicle coat protein c 98.8 5.9E-05 1.3E-09 77.9 34.7 331 146-524 950-1305(1666)
101 KOG1914 mRNA cleavage and poly 98.8 0.00015 3.3E-09 70.2 35.5 130 394-526 368-500 (656)
102 PLN02789 farnesyltranstransfer 98.8 1.4E-05 3E-10 75.8 28.8 142 185-329 39-183 (320)
103 KOG3616 Selective LIM binding 98.8 4.4E-06 9.5E-11 83.0 25.8 292 150-486 591-906 (1636)
104 PLN02789 farnesyltranstransfer 98.8 1E-05 2.2E-10 76.7 27.4 209 156-369 45-267 (320)
105 KOG3617 WD40 and TPR repeat-co 98.8 4.8E-05 1E-09 76.9 32.2 224 127-383 743-993 (1416)
106 KOG3616 Selective LIM binding 98.8 1.4E-05 3.1E-10 79.5 27.9 167 225-415 739-905 (1636)
107 KOG1125 TPR repeat-containing 98.8 1.7E-06 3.7E-11 84.0 20.8 217 159-382 296-523 (579)
108 KOG1125 TPR repeat-containing 98.7 1.2E-06 2.6E-11 85.0 19.1 218 297-525 295-525 (579)
109 KOG1070 rRNA processing protei 98.7 1.4E-05 3E-10 85.1 27.3 233 286-525 1457-1698(1710)
110 KOG1127 TPR repeat-containing 98.7 2.7E-05 5.8E-10 80.3 28.4 130 150-280 494-624 (1238)
111 KOG1128 Uncharacterized conser 98.7 8.3E-06 1.8E-10 81.4 23.7 241 142-402 392-633 (777)
112 PRK14720 transcript cleavage f 98.7 1.2E-05 2.7E-10 84.7 26.0 238 181-473 29-268 (906)
113 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.2E-13 58.9 4.0 32 282-313 2-33 (34)
114 KOG3081 Vesicle coat complex C 98.7 3E-05 6.5E-10 68.3 23.5 249 226-490 16-270 (299)
115 TIGR03302 OM_YfiO outer membra 98.6 8E-06 1.7E-10 74.9 21.4 189 145-351 30-232 (235)
116 TIGR03302 OM_YfiO outer membra 98.6 6.8E-06 1.5E-10 75.3 21.0 66 182-248 32-100 (235)
117 KOG2053 Mitochondrial inherita 98.6 0.00092 2E-08 68.8 41.8 220 126-352 23-256 (932)
118 KOG1070 rRNA processing protei 98.6 3.4E-05 7.4E-10 82.3 27.8 236 241-480 1447-1689(1710)
119 KOG3081 Vesicle coat complex C 98.6 5.2E-05 1.1E-09 66.9 24.5 250 191-456 16-271 (299)
120 PF12854 PPR_1: PPR repeat 98.6 6.6E-08 1.4E-12 57.6 4.2 32 457-488 2-33 (34)
121 PRK10370 formate-dependent nit 98.6 1.8E-05 3.8E-10 69.9 21.1 125 370-499 52-179 (198)
122 PRK10370 formate-dependent nit 98.6 1.7E-05 3.7E-10 69.9 21.0 155 190-359 23-180 (198)
123 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3E-10 70.5 19.8 160 187-349 70-229 (257)
124 PRK14720 transcript cleavage f 98.5 5E-05 1.1E-09 80.2 26.2 171 145-351 28-198 (906)
125 KOG1127 TPR repeat-containing 98.5 0.00018 3.8E-09 74.6 28.7 86 192-278 571-656 (1238)
126 COG5010 TadD Flp pilus assembl 98.5 4E-05 8.8E-10 67.6 20.5 159 222-383 70-228 (257)
127 KOG3060 Uncharacterized conser 98.5 0.00018 3.8E-09 63.2 23.5 188 196-386 25-220 (289)
128 PRK15179 Vi polysaccharide bio 98.5 4E-05 8.6E-10 80.1 23.4 184 143-335 81-268 (694)
129 PRK15179 Vi polysaccharide bio 98.5 0.0001 2.2E-09 77.2 26.3 213 150-371 51-269 (694)
130 COG4783 Putative Zn-dependent 98.5 7.8E-05 1.7E-09 71.5 22.5 140 157-317 315-455 (484)
131 COG4783 Putative Zn-dependent 98.5 0.00017 3.7E-09 69.3 24.7 148 330-501 314-462 (484)
132 PRK15359 type III secretion sy 98.4 2.8E-05 6E-10 64.8 16.7 95 395-491 27-121 (144)
133 PRK15359 type III secretion sy 98.4 3.8E-05 8.3E-10 64.0 16.6 101 153-255 29-129 (144)
134 KOG2053 Mitochondrial inherita 98.3 0.0033 7.1E-08 64.9 32.2 225 192-422 18-256 (932)
135 TIGR02552 LcrH_SycD type III s 98.3 6.6E-05 1.4E-09 62.0 15.5 95 185-280 19-113 (135)
136 KOG3060 Uncharacterized conser 98.2 0.0005 1.1E-08 60.4 20.7 164 150-316 54-220 (289)
137 TIGR02552 LcrH_SycD type III s 98.2 6.4E-05 1.4E-09 62.1 15.3 97 219-316 18-114 (135)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.3E-05 1.6E-09 72.4 16.3 122 187-314 173-295 (395)
139 KOG1914 mRNA cleavage and poly 98.2 0.0083 1.8E-07 58.6 39.3 396 110-515 21-527 (656)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00025 5.5E-09 59.3 15.5 21 260-280 56-76 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00018 3.8E-09 69.7 16.3 120 363-488 175-294 (395)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00026 5.7E-09 59.2 15.2 115 405-523 24-143 (145)
143 KOG2041 WD40 repeat protein [G 98.0 0.014 3.1E-07 58.6 28.5 132 128-277 679-821 (1189)
144 TIGR00756 PPR pentatricopeptid 98.0 8.4E-06 1.8E-10 49.2 4.1 33 254-286 2-34 (35)
145 TIGR00756 PPR pentatricopeptid 98.0 1.7E-05 3.6E-10 47.8 4.6 33 185-217 2-34 (35)
146 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 47.3 4.2 33 184-216 2-34 (34)
147 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 47.2 4.1 32 254-285 3-34 (34)
148 PF10037 MRP-S27: Mitochondria 97.9 0.00029 6.2E-09 68.6 14.0 123 213-335 61-186 (429)
149 KOG0550 Molecular chaperone (D 97.9 0.004 8.6E-08 58.8 20.1 240 154-420 55-315 (486)
150 PF10037 MRP-S27: Mitochondria 97.8 0.00025 5.5E-09 69.0 12.8 124 317-440 61-186 (429)
151 cd00189 TPR Tetratricopeptide 97.8 0.00038 8.2E-09 52.7 11.7 89 189-278 6-94 (100)
152 cd00189 TPR Tetratricopeptide 97.8 0.00038 8.2E-09 52.7 11.5 93 431-526 4-96 (100)
153 PRK10866 outer membrane biogen 97.8 0.01 2.2E-07 54.2 22.3 65 147-212 31-98 (243)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00093 2E-08 53.5 14.1 20 190-209 9-28 (119)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00072 1.6E-08 54.2 13.4 109 149-257 3-115 (119)
156 PF05843 Suf: Suppressor of fo 97.8 0.00046 1E-08 64.6 13.5 131 358-491 2-136 (280)
157 PF14938 SNAP: Soluble NSF att 97.8 0.0048 1E-07 58.0 20.2 26 149-174 36-61 (282)
158 KOG2280 Vacuolar assembly/sort 97.8 0.047 1E-06 55.7 27.3 358 145-524 380-796 (829)
159 PF08579 RPM2: Mitochondrial r 97.8 0.00048 1E-08 52.6 10.5 78 257-334 30-116 (120)
160 PLN03088 SGT1, suppressor of 97.7 0.0011 2.5E-08 64.4 15.5 89 400-490 10-98 (356)
161 KOG0553 TPR repeat-containing 97.7 0.00051 1.1E-08 62.1 11.7 96 367-466 91-186 (304)
162 PF05843 Suf: Suppressor of fo 97.7 0.001 2.2E-08 62.3 14.4 128 151-280 4-135 (280)
163 CHL00033 ycf3 photosystem I as 97.7 0.0011 2.3E-08 57.1 13.2 94 183-276 35-137 (168)
164 PF08579 RPM2: Mitochondrial r 97.7 0.00085 1.8E-08 51.3 10.6 74 329-402 32-114 (120)
165 PF01535 PPR: PPR repeat; Int 97.7 5.4E-05 1.2E-09 44.1 3.4 29 254-282 2-30 (31)
166 PRK10866 outer membrane biogen 97.7 0.011 2.4E-07 53.9 20.0 54 228-281 42-98 (243)
167 PRK15363 pathogenicity island 97.6 0.002 4.3E-08 53.2 13.2 99 392-492 35-133 (157)
168 PRK02603 photosystem I assembl 97.6 0.0042 9.2E-08 53.6 15.9 88 185-272 37-126 (172)
169 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.7E-09 53.8 6.1 81 440-523 2-83 (84)
170 PF01535 PPR: PPR repeat; Int 97.6 6.7E-05 1.5E-09 43.7 3.1 29 289-317 2-30 (31)
171 PF12895 Apc3: Anaphase-promot 97.6 0.00018 3.9E-09 53.7 6.0 17 259-275 65-81 (84)
172 PRK15363 pathogenicity island 97.6 0.0055 1.2E-07 50.6 14.9 96 358-455 36-131 (157)
173 COG3898 Uncharacterized membra 97.6 0.07 1.5E-06 50.3 32.2 286 230-530 96-395 (531)
174 PF12688 TPR_5: Tetratrico pep 97.6 0.0067 1.4E-07 48.2 14.7 105 189-297 7-116 (120)
175 PRK02603 photosystem I assembl 97.6 0.0056 1.2E-07 52.8 15.8 130 357-513 35-166 (172)
176 PF04840 Vps16_C: Vps16, C-ter 97.6 0.081 1.8E-06 50.3 24.7 109 393-522 178-286 (319)
177 PLN03088 SGT1, suppressor of 97.6 0.0029 6.3E-08 61.5 15.4 90 191-281 10-99 (356)
178 PF14938 SNAP: Soluble NSF att 97.6 0.027 5.8E-07 53.0 21.4 167 189-386 41-225 (282)
179 KOG2041 WD40 repeat protein [G 97.6 0.057 1.2E-06 54.5 23.9 75 159-243 745-821 (1189)
180 KOG0553 TPR repeat-containing 97.5 0.0049 1.1E-07 55.9 15.2 99 191-292 89-187 (304)
181 KOG1538 Uncharacterized conser 97.5 0.041 8.9E-07 55.0 22.0 202 270-489 618-844 (1081)
182 PRK10153 DNA-binding transcrip 97.5 0.012 2.5E-07 60.0 19.3 72 425-501 418-489 (517)
183 COG4700 Uncharacterized protei 97.5 0.045 9.8E-07 46.1 18.9 155 330-490 64-221 (251)
184 PF06239 ECSIT: Evolutionarily 97.5 0.003 6.5E-08 54.7 12.5 104 319-441 44-152 (228)
185 PF06239 ECSIT: Evolutionarily 97.5 0.0028 6.2E-08 54.8 12.3 105 354-477 44-153 (228)
186 KOG0550 Molecular chaperone (D 97.5 0.014 3.1E-07 55.2 17.4 260 226-492 57-351 (486)
187 KOG1130 Predicted G-alpha GTPa 97.4 0.0028 6E-08 59.6 12.7 130 324-453 197-341 (639)
188 CHL00033 ycf3 photosystem I as 97.4 0.0066 1.4E-07 52.2 14.6 81 252-333 35-117 (168)
189 PF13525 YfiO: Outer membrane 97.4 0.051 1.1E-06 48.2 19.8 169 329-519 12-199 (203)
190 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.17 3.6E-06 48.8 29.0 96 167-266 28-123 (660)
191 KOG2796 Uncharacterized conser 97.3 0.11 2.3E-06 46.5 22.6 141 359-503 179-324 (366)
192 PRK10153 DNA-binding transcrip 97.3 0.018 4E-07 58.6 18.4 63 322-386 420-482 (517)
193 KOG2796 Uncharacterized conser 97.3 0.11 2.4E-06 46.3 22.8 130 291-421 181-315 (366)
194 KOG1130 Predicted G-alpha GTPa 97.3 0.0057 1.2E-07 57.6 13.1 263 227-489 26-342 (639)
195 PF13525 YfiO: Outer membrane 97.3 0.034 7.3E-07 49.4 17.9 64 149-212 6-71 (203)
196 COG4700 Uncharacterized protei 97.3 0.084 1.8E-06 44.5 19.0 134 319-454 86-220 (251)
197 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.3E-08 47.1 6.5 50 231-280 4-53 (68)
198 PF13414 TPR_11: TPR repeat; P 97.2 0.002 4.4E-08 45.8 7.5 63 462-526 3-66 (69)
199 PF12688 TPR_5: Tetratrico pep 97.2 0.017 3.6E-07 46.0 13.1 91 398-490 7-103 (120)
200 PF13432 TPR_16: Tetratricopep 97.2 0.0021 4.5E-08 45.1 6.9 54 436-490 6-59 (65)
201 KOG1538 Uncharacterized conser 97.2 0.041 8.8E-07 55.1 17.7 217 291-528 602-847 (1081)
202 PF04840 Vps16_C: Vps16, C-ter 97.1 0.25 5.3E-06 47.0 28.9 109 359-487 179-287 (319)
203 COG4235 Cytochrome c biogenesi 97.1 0.026 5.7E-07 51.5 15.2 101 180-281 153-256 (287)
204 PF13414 TPR_11: TPR repeat; P 97.1 0.0023 5.1E-08 45.4 6.8 64 426-490 2-66 (69)
205 PF14559 TPR_19: Tetratricopep 97.1 0.0028 6E-08 44.9 7.1 51 160-211 3-53 (68)
206 PF13432 TPR_16: Tetratricopep 97.1 0.0032 7E-08 44.1 7.3 54 227-280 6-59 (65)
207 PRK10803 tol-pal system protei 97.1 0.011 2.4E-07 54.4 12.5 100 393-492 144-247 (263)
208 PF12921 ATP13: Mitochondrial 97.1 0.0096 2.1E-07 47.8 10.6 55 457-511 47-101 (126)
209 COG4235 Cytochrome c biogenesi 97.1 0.044 9.4E-07 50.2 15.8 101 390-492 154-257 (287)
210 PF07079 DUF1347: Protein of u 97.0 0.4 8.7E-06 46.4 37.7 395 121-525 15-522 (549)
211 PRK10803 tol-pal system protei 96.9 0.025 5.5E-07 52.1 13.1 96 221-316 146-246 (263)
212 COG3898 Uncharacterized membra 96.8 0.47 1E-05 45.0 32.2 291 185-491 84-392 (531)
213 PF03704 BTAD: Bacterial trans 96.8 0.14 3E-06 42.7 15.9 58 326-384 66-123 (146)
214 PF13281 DUF4071: Domain of un 96.8 0.44 9.5E-06 45.9 20.6 76 292-367 146-227 (374)
215 KOG2280 Vacuolar assembly/sort 96.7 0.91 2E-05 46.8 25.7 321 143-487 427-795 (829)
216 COG4105 ComL DNA uptake lipopr 96.7 0.44 9.5E-06 42.8 20.9 182 149-351 36-233 (254)
217 PF13371 TPR_9: Tetratricopept 96.7 0.014 3.1E-07 41.8 8.0 56 435-491 3-58 (73)
218 PF13424 TPR_12: Tetratricopep 96.6 0.0077 1.7E-07 44.0 6.5 64 463-526 6-74 (78)
219 KOG1920 IkappaB kinase complex 96.6 1 2.2E-05 49.0 23.9 40 240-280 779-820 (1265)
220 PF13371 TPR_9: Tetratricopept 96.4 0.017 3.7E-07 41.4 7.2 60 469-530 2-61 (73)
221 PRK15331 chaperone protein Sic 96.4 0.32 7E-06 40.6 15.0 85 334-420 49-133 (165)
222 PF03704 BTAD: Bacterial trans 96.4 0.024 5.2E-07 47.3 8.8 56 257-313 67-122 (146)
223 PRK15331 chaperone protein Sic 96.4 0.14 3.1E-06 42.6 12.8 89 400-490 45-133 (165)
224 PF13281 DUF4071: Domain of un 96.3 1.1 2.4E-05 43.2 22.7 70 227-296 150-226 (374)
225 PF04053 Coatomer_WDAD: Coatom 96.3 0.18 3.9E-06 50.3 15.7 158 156-347 269-427 (443)
226 PF08631 SPO22: Meiosis protei 96.3 0.96 2.1E-05 42.4 26.3 17 402-418 256-272 (278)
227 KOG1585 Protein required for f 96.3 0.75 1.6E-05 40.8 18.4 215 141-381 24-251 (308)
228 COG4105 ComL DNA uptake lipopr 96.3 0.82 1.8E-05 41.1 21.4 55 332-386 44-100 (254)
229 PRK11906 transcriptional regul 96.2 0.39 8.4E-06 47.1 16.8 145 338-487 274-432 (458)
230 PF10300 DUF3808: Protein of u 96.2 1.7 3.7E-05 44.1 23.8 83 267-351 248-334 (468)
231 COG0457 NrfG FOG: TPR repeat [ 96.2 0.86 1.9E-05 40.6 31.0 224 265-491 36-265 (291)
232 PF09205 DUF1955: Domain of un 96.2 0.48 1E-05 37.7 14.5 140 367-529 12-151 (161)
233 PF07079 DUF1347: Protein of u 96.2 1.4 3.1E-05 42.8 37.5 127 369-504 391-531 (549)
234 COG3118 Thioredoxin domain-con 96.1 1 2.2E-05 41.3 17.9 142 368-512 145-286 (304)
235 PF04053 Coatomer_WDAD: Coatom 96.1 0.34 7.4E-06 48.3 16.5 130 254-416 297-426 (443)
236 PF13424 TPR_12: Tetratricopep 96.1 0.019 4.2E-07 41.8 5.9 63 428-490 6-74 (78)
237 KOG0543 FKBP-type peptidyl-pro 96.0 0.15 3.2E-06 48.7 12.8 140 363-527 214-355 (397)
238 KOG2610 Uncharacterized conser 96.0 0.39 8.5E-06 44.5 14.9 116 195-312 115-234 (491)
239 COG1729 Uncharacterized protei 96.0 0.12 2.6E-06 46.7 11.5 98 394-492 144-245 (262)
240 COG3118 Thioredoxin domain-con 96.0 1.3 2.8E-05 40.7 18.1 52 228-279 144-195 (304)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.14 2.9E-06 50.1 12.1 62 392-455 75-140 (453)
242 smart00299 CLH Clathrin heavy 95.9 0.7 1.5E-05 38.1 15.2 14 147-160 40-53 (140)
243 KOG1920 IkappaB kinase complex 95.9 3.4 7.3E-05 45.2 23.0 313 133-488 695-1052(1265)
244 PF13512 TPR_18: Tetratricopep 95.8 0.36 7.9E-06 39.3 12.3 84 147-230 9-94 (142)
245 PF12921 ATP13: Mitochondrial 95.8 0.21 4.5E-06 40.2 10.9 97 356-472 1-98 (126)
246 KOG4555 TPR repeat-containing 95.6 0.48 1E-05 37.6 11.9 89 228-317 53-145 (175)
247 KOG0543 FKBP-type peptidyl-pro 95.6 0.24 5.2E-06 47.3 12.3 62 220-281 259-320 (397)
248 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.33 7.2E-06 47.5 13.6 66 180-247 72-141 (453)
249 KOG1585 Protein required for f 95.6 1.6 3.4E-05 38.9 20.0 52 432-484 195-249 (308)
250 KOG2114 Vacuolar assembly/sort 95.5 0.95 2.1E-05 47.3 17.0 180 221-418 337-516 (933)
251 PF09205 DUF1955: Domain of un 95.5 0.96 2.1E-05 36.0 15.1 60 292-352 91-150 (161)
252 KOG1941 Acetylcholine receptor 95.5 0.59 1.3E-05 43.9 14.0 229 262-490 16-274 (518)
253 KOG1941 Acetylcholine receptor 95.4 1.9 4E-05 40.7 17.0 227 228-455 16-274 (518)
254 PRK11906 transcriptional regul 95.4 1.1 2.4E-05 44.1 16.3 145 164-311 274-431 (458)
255 KOG4555 TPR repeat-containing 95.4 0.41 8.8E-06 38.0 10.9 91 401-492 52-145 (175)
256 COG0457 NrfG FOG: TPR repeat [ 95.4 1.8 3.9E-05 38.5 30.8 166 219-385 60-230 (291)
257 KOG1258 mRNA processing protei 95.4 3.6 7.8E-05 41.6 32.0 369 132-512 65-489 (577)
258 COG3629 DnrI DNA-binding trans 95.3 0.11 2.5E-06 47.6 9.0 97 130-227 133-236 (280)
259 PF08631 SPO22: Meiosis protei 95.3 2.6 5.6E-05 39.5 26.6 62 324-386 86-150 (278)
260 PF10300 DUF3808: Protein of u 95.3 3.9 8.4E-05 41.5 23.1 176 238-419 177-374 (468)
261 PF04184 ST7: ST7 protein; In 95.3 3.5 7.6E-05 40.8 21.2 150 257-420 173-323 (539)
262 smart00299 CLH Clathrin heavy 95.2 1.5 3.3E-05 36.1 15.8 41 154-195 13-53 (140)
263 PF13170 DUF4003: Protein of u 95.1 3 6.5E-05 39.3 18.0 127 199-327 78-222 (297)
264 PF04184 ST7: ST7 protein; In 95.1 0.51 1.1E-05 46.4 12.9 169 329-513 175-346 (539)
265 COG5107 RNA14 Pre-mRNA 3'-end 95.1 3.6 7.8E-05 40.1 33.0 129 392-525 397-529 (660)
266 KOG3941 Intermediate in Toll s 95.1 0.21 4.5E-06 45.1 9.5 88 284-371 64-172 (406)
267 PF13512 TPR_18: Tetratricopep 95.1 0.81 1.8E-05 37.3 12.1 73 227-299 19-94 (142)
268 KOG3941 Intermediate in Toll s 95.0 0.23 5E-06 44.8 9.6 83 162-244 86-185 (406)
269 COG1729 Uncharacterized protei 94.9 0.58 1.3E-05 42.4 12.1 104 150-254 144-251 (262)
270 KOG2114 Vacuolar assembly/sort 94.9 6 0.00013 41.7 25.7 141 156-313 376-516 (933)
271 COG4785 NlpI Lipoprotein NlpI, 94.8 2 4.3E-05 37.5 14.1 65 146-211 97-161 (297)
272 KOG2610 Uncharacterized conser 94.6 2.2 4.7E-05 39.9 14.9 154 298-453 114-273 (491)
273 KOG1550 Extracellular protein 94.6 6.7 0.00015 40.9 24.2 52 159-213 260-323 (552)
274 KOG1550 Extracellular protein 94.4 7.3 0.00016 40.6 24.9 245 234-491 228-504 (552)
275 COG1747 Uncharacterized N-term 94.3 6.3 0.00014 39.2 25.3 164 321-491 65-234 (711)
276 COG4649 Uncharacterized protei 94.0 3.3 7.1E-05 34.9 15.9 126 367-492 68-197 (221)
277 PF13428 TPR_14: Tetratricopep 93.8 0.21 4.6E-06 31.5 5.1 26 186-211 4-29 (44)
278 PF13428 TPR_14: Tetratricopep 93.8 0.31 6.7E-06 30.7 5.8 29 464-492 3-31 (44)
279 KOG1258 mRNA processing protei 93.7 8.8 0.00019 39.0 30.9 130 150-281 47-180 (577)
280 COG4649 Uncharacterized protei 93.7 3.7 8E-05 34.6 13.7 124 263-386 69-196 (221)
281 PF07035 Mic1: Colon cancer-as 93.3 4.6 9.9E-05 34.2 15.5 26 174-199 20-45 (167)
282 COG3629 DnrI DNA-binding trans 93.1 1.1 2.5E-05 41.2 10.5 73 220-292 155-232 (280)
283 COG1747 Uncharacterized N-term 93.0 11 0.00023 37.7 23.2 181 144-332 62-249 (711)
284 PF13170 DUF4003: Protein of u 92.7 9 0.0002 36.1 21.4 48 269-316 79-132 (297)
285 PF10602 RPN7: 26S proteasome 92.6 1.9 4.1E-05 37.1 10.8 62 149-210 37-100 (177)
286 PF02284 COX5A: Cytochrome c o 92.5 1.9 4.1E-05 32.6 8.9 60 201-260 28-87 (108)
287 COG2976 Uncharacterized protei 92.5 6.4 0.00014 34.0 14.6 92 434-528 96-189 (207)
288 KOG2396 HAT (Half-A-TPR) repea 92.5 12 0.00027 37.2 35.2 100 424-526 456-558 (568)
289 PF02259 FAT: FAT domain; Int 92.4 11 0.00025 36.5 24.6 66 355-420 144-212 (352)
290 PF04097 Nic96: Nup93/Nic96; 92.1 18 0.00039 38.2 19.8 59 153-212 116-181 (613)
291 PF13176 TPR_7: Tetratricopept 92.0 0.39 8.5E-06 28.7 4.2 25 465-489 2-26 (36)
292 KOG4570 Uncharacterized conser 91.9 0.98 2.1E-05 41.7 8.2 110 143-256 59-173 (418)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 91.8 3.2 6.9E-05 31.1 9.2 62 199-260 23-84 (103)
294 PF10602 RPN7: 26S proteasome 91.7 3.5 7.6E-05 35.5 11.3 59 290-348 39-99 (177)
295 PF00515 TPR_1: Tetratricopept 91.2 0.57 1.2E-05 27.4 4.3 28 463-490 2-29 (34)
296 PF09613 HrpB1_HrpK: Bacterial 91.1 5.8 0.00013 33.1 11.4 112 399-519 17-130 (160)
297 PF09613 HrpB1_HrpK: Bacterial 90.9 8.6 0.00019 32.1 13.8 19 262-280 54-72 (160)
298 PF13176 TPR_7: Tetratricopept 90.6 0.68 1.5E-05 27.6 4.3 25 185-209 1-25 (36)
299 PF07035 Mic1: Colon cancer-as 90.3 10 0.00022 32.1 15.6 30 309-338 16-45 (167)
300 PF07719 TPR_2: Tetratricopept 90.3 0.76 1.6E-05 26.7 4.3 27 464-490 3-29 (34)
301 PF02259 FAT: FAT domain; Int 90.1 19 0.00041 34.8 26.2 67 320-386 144-213 (352)
302 PRK09687 putative lyase; Provi 90.0 17 0.00037 34.1 28.3 233 251-509 36-278 (280)
303 COG2909 MalT ATP-dependent tra 89.6 33 0.00071 36.9 29.1 226 298-523 426-684 (894)
304 KOG4570 Uncharacterized conser 89.2 6.9 0.00015 36.3 11.1 49 407-455 115-163 (418)
305 PF13431 TPR_17: Tetratricopep 89.1 0.59 1.3E-05 27.5 3.0 26 247-272 8-33 (34)
306 PF13431 TPR_17: Tetratricopep 88.9 0.64 1.4E-05 27.4 3.1 31 486-518 3-33 (34)
307 KOG0991 Replication factor C, 88.8 10 0.00022 33.7 11.5 138 361-509 134-283 (333)
308 KOG0276 Vesicle coat complex C 87.9 4.6 9.9E-05 40.9 9.8 44 264-313 649-692 (794)
309 KOG0890 Protein kinase of the 87.5 75 0.0016 38.4 27.1 321 153-492 1388-1732(2382)
310 PRK15180 Vi polysaccharide bio 87.3 26 0.00057 34.7 14.2 128 187-317 293-421 (831)
311 PF13374 TPR_10: Tetratricopep 86.7 1.8 3.9E-05 26.4 4.5 28 463-490 3-30 (42)
312 PF00515 TPR_1: Tetratricopept 86.7 1.9 4.2E-05 25.0 4.4 29 184-212 2-30 (34)
313 PRK11619 lytic murein transgly 86.5 49 0.0011 35.2 31.6 323 149-489 35-373 (644)
314 KOG4234 TPR repeat-containing 86.4 21 0.00046 31.0 13.0 88 402-490 105-196 (271)
315 KOG0276 Vesicle coat complex C 86.3 13 0.00029 37.8 12.0 132 324-488 616-747 (794)
316 PF11207 DUF2989: Protein of u 86.0 7.2 0.00016 33.9 9.0 9 337-345 155-163 (203)
317 PRK11619 lytic murein transgly 86.0 51 0.0011 35.1 37.8 93 434-532 414-510 (644)
318 TIGR02561 HrpB1_HrpK type III 86.0 18 0.00039 29.8 12.4 19 262-280 54-72 (153)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 86.0 8.6 0.00019 28.9 8.0 60 445-506 25-84 (103)
320 COG4785 NlpI Lipoprotein NlpI, 85.8 24 0.00053 31.1 15.4 67 249-316 96-162 (297)
321 TIGR02561 HrpB1_HrpK type III 85.7 16 0.00034 30.2 10.2 51 403-457 21-74 (153)
322 KOG1464 COP9 signalosome, subu 85.5 29 0.00062 31.7 19.2 196 264-490 39-259 (440)
323 KOG4234 TPR repeat-containing 85.5 13 0.00028 32.3 10.0 89 436-528 104-198 (271)
324 KOG2471 TPR repeat-containing 85.2 43 0.00093 33.4 15.2 39 471-511 344-382 (696)
325 PF02284 COX5A: Cytochrome c o 85.0 6.7 0.00015 29.8 7.2 60 445-506 28-87 (108)
326 PF08424 NRDE-2: NRDE-2, neces 84.9 37 0.00081 32.5 17.4 80 354-435 16-107 (321)
327 PF13181 TPR_8: Tetratricopept 84.7 1.8 3.9E-05 25.1 3.5 27 464-490 3-29 (34)
328 KOG2297 Predicted translation 84.6 34 0.00074 31.8 17.3 75 368-447 266-341 (412)
329 TIGR02508 type_III_yscG type I 84.6 15 0.00032 27.9 8.7 52 260-317 47-98 (115)
330 PF07575 Nucleopor_Nup85: Nup8 84.6 56 0.0012 34.3 18.6 75 377-453 390-464 (566)
331 KOG4648 Uncharacterized conser 84.6 5.2 0.00011 37.5 7.9 52 366-418 106-157 (536)
332 PF06552 TOM20_plant: Plant sp 84.6 16 0.00035 31.2 10.2 44 478-530 96-139 (186)
333 PF13374 TPR_10: Tetratricopep 84.2 2.9 6.2E-05 25.5 4.6 26 254-279 4-29 (42)
334 COG3947 Response regulator con 84.1 35 0.00077 31.6 15.3 56 467-524 284-339 (361)
335 PF10345 Cohesin_load: Cohesin 83.3 67 0.0014 34.1 35.6 374 151-526 103-605 (608)
336 PF11207 DUF2989: Protein of u 82.7 15 0.00033 32.0 9.5 80 437-518 117-198 (203)
337 PRK13342 recombination factor 82.4 56 0.0012 32.7 19.3 24 266-289 244-267 (413)
338 PF07719 TPR_2: Tetratricopept 81.9 4.6 0.0001 23.2 4.6 29 499-527 2-30 (34)
339 PF13174 TPR_6: Tetratricopept 81.7 2.6 5.6E-05 24.0 3.4 24 468-491 6-29 (33)
340 KOG4077 Cytochrome c oxidase, 81.6 9.2 0.0002 30.3 7.0 53 204-256 70-122 (149)
341 COG3947 Response regulator con 80.6 49 0.0011 30.7 15.7 59 325-384 282-340 (361)
342 COG4455 ImpE Protein of avirul 80.5 14 0.00031 32.5 8.5 76 290-366 4-81 (273)
343 PRK09687 putative lyase; Provi 80.4 51 0.0011 30.9 29.7 201 251-472 67-277 (280)
344 KOG0890 Protein kinase of the 80.4 1.5E+02 0.0032 36.2 31.3 120 150-276 1422-1542(2382)
345 KOG4648 Uncharacterized conser 80.4 11 0.00023 35.6 8.2 88 192-280 106-193 (536)
346 PF13929 mRNA_stabil: mRNA sta 80.0 51 0.0011 30.6 17.0 64 283-346 198-262 (292)
347 KOG2063 Vacuolar assembly/sort 80.0 61 0.0013 35.4 14.8 115 289-403 506-637 (877)
348 TIGR02508 type_III_yscG type I 79.2 24 0.00052 26.8 8.2 52 295-352 47-98 (115)
349 COG0790 FOG: TPR repeat, SEL1 78.8 58 0.0013 30.6 21.6 53 160-215 89-145 (292)
350 COG4455 ImpE Protein of avirul 78.8 15 0.00033 32.4 8.1 50 191-241 9-58 (273)
351 COG2909 MalT ATP-dependent tra 78.6 1E+02 0.0023 33.4 29.6 264 154-417 366-684 (894)
352 KOG1464 COP9 signalosome, subu 78.4 54 0.0012 30.0 17.8 153 127-279 42-218 (440)
353 PF00637 Clathrin: Region in C 78.3 0.8 1.7E-05 37.9 0.4 83 363-452 13-95 (143)
354 PF07163 Pex26: Pex26 protein; 78.2 33 0.00072 31.6 10.4 88 221-310 86-181 (309)
355 PF07163 Pex26: Pex26 protein; 78.2 32 0.00069 31.7 10.3 88 258-345 89-181 (309)
356 KOG2471 TPR repeat-containing 78.1 58 0.0012 32.6 12.6 36 437-473 345-380 (696)
357 KOG2066 Vacuolar assembly/sort 77.5 1E+02 0.0023 32.8 26.1 101 155-264 363-467 (846)
358 PF10579 Rapsyn_N: Rapsyn N-te 77.4 13 0.00028 26.8 6.1 48 439-486 18-67 (80)
359 PF00637 Clathrin: Region in C 77.1 0.94 2E-05 37.4 0.6 53 294-346 14-66 (143)
360 PF13181 TPR_8: Tetratricopept 76.6 8.4 0.00018 22.1 4.5 29 499-527 2-30 (34)
361 TIGR03504 FimV_Cterm FimV C-te 76.6 5.3 0.00012 25.1 3.7 22 468-489 5-26 (44)
362 KOG0687 26S proteasome regulat 76.0 72 0.0016 30.2 15.7 22 362-383 109-130 (393)
363 PRK14700 recombination factor 76.0 70 0.0015 30.0 17.9 128 179-319 63-198 (300)
364 PF13929 mRNA_stabil: mRNA sta 75.9 68 0.0015 29.9 17.8 23 359-381 204-226 (292)
365 KOG3807 Predicted membrane pro 75.9 65 0.0014 30.4 11.8 108 369-491 228-340 (556)
366 KOG1498 26S proteasome regulat 75.9 80 0.0017 30.7 18.0 101 396-503 135-253 (439)
367 PF09986 DUF2225: Uncharacteri 75.8 57 0.0012 29.1 11.5 23 470-492 173-195 (214)
368 PHA02875 ankyrin repeat protei 75.7 83 0.0018 31.3 14.2 182 189-392 38-230 (413)
369 PF06552 TOM20_plant: Plant sp 74.3 37 0.00081 29.1 9.1 42 303-352 96-137 (186)
370 PF13174 TPR_6: Tetratricopept 74.2 6.4 0.00014 22.3 3.5 27 501-527 3-29 (33)
371 KOG4077 Cytochrome c oxidase, 74.1 27 0.00058 27.8 7.6 60 445-506 67-126 (149)
372 KOG1114 Tripeptidyl peptidase 73.8 1.4E+02 0.0031 32.6 15.9 83 443-526 1212-1294(1304)
373 PF07721 TPR_4: Tetratricopept 73.4 5.2 0.00011 21.6 2.8 18 258-275 7-24 (26)
374 COG5159 RPN6 26S proteasome re 73.3 78 0.0017 29.3 16.9 198 258-455 9-234 (421)
375 PF08424 NRDE-2: NRDE-2, neces 72.9 91 0.002 29.9 17.9 80 199-279 47-129 (321)
376 PRK10941 hypothetical protein; 72.7 66 0.0014 29.9 11.4 80 430-510 184-263 (269)
377 TIGR03504 FimV_Cterm FimV C-te 71.9 11 0.00023 23.8 4.2 23 258-280 5-27 (44)
378 PF14853 Fis1_TPR_C: Fis1 C-te 71.9 17 0.00036 24.0 5.3 36 467-505 6-41 (53)
379 PF09477 Type_III_YscG: Bacter 71.3 45 0.00098 25.7 8.7 16 299-314 81-96 (116)
380 PF11846 DUF3366: Domain of un 70.7 24 0.00052 30.8 7.9 53 439-491 120-173 (193)
381 KOG4507 Uncharacterized conser 69.9 35 0.00076 34.8 9.2 126 237-364 592-717 (886)
382 KOG1586 Protein required for f 69.7 85 0.0018 28.2 21.4 23 297-319 164-186 (288)
383 PF14689 SPOB_a: Sensor_kinase 69.6 13 0.00028 25.5 4.6 26 465-490 26-51 (62)
384 PF10345 Cohesin_load: Cohesin 69.5 1.6E+02 0.0034 31.3 40.4 184 129-313 38-251 (608)
385 smart00028 TPR Tetratricopepti 69.4 10 0.00022 20.5 3.7 26 465-490 4-29 (34)
386 PHA02875 ankyrin repeat protei 67.9 99 0.0021 30.8 12.7 77 227-310 8-88 (413)
387 PF04097 Nic96: Nup93/Nic96; 67.8 1.7E+02 0.0037 31.0 17.3 45 186-231 114-158 (613)
388 COG2976 Uncharacterized protei 66.7 88 0.0019 27.3 18.9 90 398-492 95-189 (207)
389 KOG0991 Replication factor C, 65.5 1E+02 0.0023 27.7 13.3 127 150-285 132-271 (333)
390 KOG1586 Protein required for f 63.3 1.2E+02 0.0025 27.5 22.2 27 330-356 162-188 (288)
391 KOG4507 Uncharacterized conser 63.2 34 0.00073 34.9 7.7 88 404-492 619-706 (886)
392 PF07575 Nucleopor_Nup85: Nup8 62.5 42 0.0009 35.2 9.0 29 144-173 145-173 (566)
393 PF13762 MNE1: Mitochondrial s 62.2 89 0.0019 25.8 10.3 81 290-370 42-128 (145)
394 PF09986 DUF2225: Uncharacteri 61.8 1.2E+02 0.0026 27.1 12.2 52 479-530 142-197 (214)
395 cd08819 CARD_MDA5_2 Caspase ac 61.7 63 0.0014 23.9 7.8 67 446-519 21-87 (88)
396 PF12862 Apc5: Anaphase-promot 61.6 48 0.001 24.9 6.9 24 468-491 47-70 (94)
397 KOG1498 26S proteasome regulat 61.5 1.6E+02 0.0036 28.6 15.7 24 255-278 134-157 (439)
398 KOG2297 Predicted translation 61.3 1.5E+02 0.0032 27.9 19.7 67 406-482 269-341 (412)
399 KOG1114 Tripeptidyl peptidase 61.2 2.6E+02 0.0057 30.8 14.7 80 373-453 1212-1292(1304)
400 KOG2908 26S proteasome regulat 60.9 1.3E+02 0.0028 28.7 10.5 80 227-306 84-176 (380)
401 KOG4521 Nuclear pore complex, 60.9 2.5E+02 0.0053 31.8 13.9 56 254-310 985-1044(1480)
402 PF14689 SPOB_a: Sensor_kinase 60.0 28 0.00061 23.8 4.8 22 363-384 29-50 (62)
403 PF14669 Asp_Glu_race_2: Putat 59.7 1.2E+02 0.0026 26.4 13.9 83 254-346 109-205 (233)
404 PRK12798 chemotaxis protein; R 59.4 1.9E+02 0.0041 28.6 20.3 223 308-533 98-330 (421)
405 COG5187 RPN7 26S proteasome re 59.2 1.5E+02 0.0033 27.5 14.1 25 358-382 116-140 (412)
406 COG0790 FOG: TPR repeat, SEL1 59.1 1.6E+02 0.0034 27.6 25.1 16 407-422 206-221 (292)
407 PF10366 Vps39_1: Vacuolar sor 58.9 53 0.0011 25.6 6.8 27 289-315 41-67 (108)
408 PF09670 Cas_Cas02710: CRISPR- 58.7 1.9E+02 0.0041 28.5 12.2 56 364-420 138-197 (379)
409 PRK09857 putative transposase; 58.6 99 0.0021 29.2 9.9 55 229-283 217-271 (292)
410 KOG2300 Uncharacterized conser 58.5 2.1E+02 0.0046 28.9 34.5 348 148-500 88-523 (629)
411 PRK10941 hypothetical protein; 58.4 90 0.002 29.0 9.3 57 224-280 187-243 (269)
412 PF12862 Apc5: Anaphase-promot 57.4 62 0.0014 24.2 6.9 56 472-527 8-70 (94)
413 PF10475 DUF2450: Protein of u 57.1 1.3E+02 0.0028 28.3 10.5 50 226-280 106-155 (291)
414 PF13762 MNE1: Mitochondrial s 57.0 1.1E+02 0.0023 25.4 8.4 82 150-231 41-128 (145)
415 PF10579 Rapsyn_N: Rapsyn N-te 56.9 33 0.00072 24.8 4.8 49 474-522 18-67 (80)
416 PF11817 Foie-gras_1: Foie gra 56.8 49 0.0011 30.3 7.4 60 466-525 182-245 (247)
417 PF09477 Type_III_YscG: Bacter 56.8 91 0.002 24.2 8.7 80 197-282 20-99 (116)
418 KOG0686 COP9 signalosome, subu 56.6 2.1E+02 0.0045 28.2 14.8 62 219-280 151-215 (466)
419 KOG0686 COP9 signalosome, subu 55.9 2.1E+02 0.0046 28.1 15.3 61 150-210 152-214 (466)
420 COG5187 RPN7 26S proteasome re 55.6 1.8E+02 0.0039 27.2 13.7 99 320-420 113-220 (412)
421 KOG2659 LisH motif-containing 54.4 1.6E+02 0.0035 26.3 10.2 23 188-210 69-91 (228)
422 cd00280 TRFH Telomeric Repeat 54.4 1E+02 0.0022 26.6 8.0 20 436-455 120-139 (200)
423 PF04190 DUF410: Protein of un 54.1 1.8E+02 0.004 26.8 21.3 26 250-275 88-113 (260)
424 PF11848 DUF3368: Domain of un 54.0 48 0.001 21.2 4.9 31 195-225 14-44 (48)
425 PF11846 DUF3366: Domain of un 53.9 69 0.0015 27.9 7.7 33 424-456 141-173 (193)
426 PRK10564 maltose regulon perip 53.9 30 0.00065 32.3 5.4 41 183-223 257-297 (303)
427 PRK09857 putative transposase; 53.3 85 0.0018 29.6 8.5 28 503-530 245-272 (292)
428 smart00386 HAT HAT (Half-A-TPR 52.9 29 0.00062 19.2 3.6 24 234-257 3-26 (33)
429 COG5159 RPN6 26S proteasome re 52.8 2E+02 0.0043 26.8 20.8 94 292-385 130-234 (421)
430 KOG4642 Chaperone-dependent E3 52.2 1.8E+02 0.004 26.3 10.5 81 196-278 23-104 (284)
431 COG0735 Fur Fe2+/Zn2+ uptake r 51.7 82 0.0018 26.0 7.3 61 171-232 9-69 (145)
432 PF11848 DUF3368: Domain of un 51.7 62 0.0013 20.7 5.3 25 301-325 16-40 (48)
433 PF10366 Vps39_1: Vacuolar sor 51.6 1E+02 0.0022 24.0 7.3 27 359-385 41-67 (108)
434 COG4941 Predicted RNA polymera 51.1 2.3E+02 0.005 27.1 11.8 115 303-421 272-394 (415)
435 KOG2005 26S proteasome regulat 50.8 3.3E+02 0.0071 28.8 22.4 79 150-238 180-259 (878)
436 PRK13342 recombination factor 50.5 2.7E+02 0.0059 27.8 19.7 19 371-389 244-262 (413)
437 PRK10564 maltose regulon perip 49.3 42 0.0009 31.4 5.5 37 253-289 258-294 (303)
438 PF04190 DUF410: Protein of un 49.2 2.2E+02 0.0047 26.3 16.8 144 155-316 17-170 (260)
439 COG2256 MGS1 ATPase related to 48.9 2.8E+02 0.006 27.4 19.6 105 182-301 191-298 (436)
440 PF11817 Foie-gras_1: Foie gra 48.2 1.3E+02 0.0027 27.6 8.7 21 258-278 184-204 (247)
441 KOG2066 Vacuolar assembly/sort 48.1 3.9E+02 0.0084 28.8 28.3 157 108-279 359-532 (846)
442 COG0735 Fur Fe2+/Zn2+ uptake r 47.1 1.3E+02 0.0027 24.9 7.7 62 274-336 8-69 (145)
443 KOG4567 GTPase-activating prot 47.1 2.5E+02 0.0055 26.5 9.9 70 412-486 263-342 (370)
444 PF09454 Vps23_core: Vps23 cor 46.4 36 0.00079 23.6 3.6 49 147-196 7-55 (65)
445 cd08819 CARD_MDA5_2 Caspase ac 46.4 1.2E+02 0.0026 22.5 6.6 14 371-384 50-63 (88)
446 KOG0545 Aryl-hydrocarbon recep 45.7 2.2E+02 0.0047 26.0 9.0 96 395-491 181-293 (329)
447 KOG0292 Vesicle coat complex C 45.7 1.2E+02 0.0027 32.8 8.7 97 159-280 604-700 (1202)
448 PF04762 IKI3: IKI3 family; I 45.3 5E+02 0.011 29.3 17.6 27 325-351 815-843 (928)
449 COG2178 Predicted RNA-binding 45.3 2.1E+02 0.0045 25.0 10.1 17 297-313 39-55 (204)
450 PF04762 IKI3: IKI3 family; I 45.1 5E+02 0.011 29.3 17.9 30 287-316 812-843 (928)
451 PF11838 ERAP1_C: ERAP1-like C 44.4 2.8E+02 0.0062 26.3 17.8 189 155-347 45-262 (324)
452 PF03745 DUF309: Domain of unk 44.4 99 0.0022 21.2 5.5 18 368-385 10-27 (62)
453 PF14561 TPR_20: Tetratricopep 44.2 1.3E+02 0.0029 22.4 8.7 55 248-302 18-73 (90)
454 KOG2908 26S proteasome regulat 43.8 3E+02 0.0065 26.4 11.8 50 196-245 88-142 (380)
455 KOG1308 Hsp70-interacting prot 43.6 14 0.00029 35.0 1.5 121 402-528 124-245 (377)
456 KOG2034 Vacuolar sorting prote 43.5 4.8E+02 0.01 28.6 30.7 173 153-348 363-556 (911)
457 PF13934 ELYS: Nuclear pore co 43.4 2.5E+02 0.0054 25.3 15.3 54 398-454 114-167 (226)
458 PF10255 Paf67: RNA polymerase 42.9 3.5E+02 0.0075 26.9 11.0 134 286-419 38-191 (404)
459 PF02631 RecX: RecX family; I 42.8 1.7E+02 0.0036 23.1 11.5 99 409-513 9-107 (121)
460 PF09670 Cas_Cas02710: CRISPR- 42.6 3.5E+02 0.0075 26.7 13.2 54 192-246 140-197 (379)
461 KOG1308 Hsp70-interacting prot 42.6 19 0.0004 34.1 2.3 89 231-321 127-216 (377)
462 PF11123 DNA_Packaging_2: DNA 41.7 1.2E+02 0.0026 21.5 5.4 33 233-265 12-44 (82)
463 TIGR02710 CRISPR-associated pr 41.7 3.5E+02 0.0077 26.6 11.7 54 259-312 137-196 (380)
464 KOG0292 Vesicle coat complex C 41.4 2.3E+02 0.005 30.9 9.9 71 368-453 654-724 (1202)
465 PRK13800 putative oxidoreducta 41.0 5.7E+02 0.012 28.8 30.8 125 390-525 754-879 (897)
466 PF00244 14-3-3: 14-3-3 protei 40.8 2.8E+02 0.0061 25.2 12.0 59 257-315 6-65 (236)
467 KOG4642 Chaperone-dependent E3 40.4 2.9E+02 0.0062 25.2 11.2 118 297-418 20-143 (284)
468 PHA03100 ankyrin repeat protei 39.9 3.8E+02 0.0082 27.2 11.8 215 153-391 37-277 (480)
469 KOG0989 Replication factor C, 39.1 3.5E+02 0.0075 25.7 10.2 69 111-182 172-242 (346)
470 TIGR01228 hutU urocanate hydra 38.5 1.3E+02 0.0028 30.3 7.3 70 160-242 206-280 (545)
471 KOG0687 26S proteasome regulat 38.4 3.6E+02 0.0079 25.8 19.2 96 253-350 105-209 (393)
472 KOG0376 Serine-threonine phosp 38.2 73 0.0016 31.8 5.6 56 155-211 11-66 (476)
473 PF14929 TAF1_subA: TAF RNA Po 38.1 4.9E+02 0.011 27.2 25.1 135 370-511 322-468 (547)
474 PF09454 Vps23_core: Vps23 cor 37.9 1E+02 0.0022 21.4 4.8 45 286-331 7-51 (65)
475 KOG3364 Membrane protein invol 37.4 2.3E+02 0.005 23.2 9.9 66 425-491 30-100 (149)
476 PF08311 Mad3_BUB1_I: Mad3/BUB 37.3 2.2E+02 0.0047 22.9 9.9 81 443-525 46-126 (126)
477 cd00280 TRFH Telomeric Repeat 37.3 2.8E+02 0.006 24.1 12.4 22 259-280 118-139 (200)
478 PF11768 DUF3312: Protein of u 36.8 4.9E+02 0.011 26.9 11.1 123 398-528 414-537 (545)
479 KOG0376 Serine-threonine phosp 36.8 74 0.0016 31.7 5.4 101 190-294 11-112 (476)
480 PF02847 MA3: MA3 domain; Int 36.7 2E+02 0.0043 22.2 7.1 22 257-278 7-28 (113)
481 KOG4567 GTPase-activating prot 35.8 2.2E+02 0.0049 26.8 7.9 33 248-280 274-306 (370)
482 PF11663 Toxin_YhaV: Toxin wit 35.6 44 0.00096 27.0 3.1 21 301-321 109-129 (140)
483 PRK08691 DNA polymerase III su 35.5 5.1E+02 0.011 27.9 11.5 81 409-492 181-275 (709)
484 TIGR01228 hutU urocanate hydra 35.1 3.4E+02 0.0073 27.6 9.4 26 509-534 404-429 (545)
485 PF15297 CKAP2_C: Cytoskeleton 35.0 3.5E+02 0.0077 26.0 9.3 65 165-229 120-186 (353)
486 COG5108 RPO41 Mitochondrial DN 35.0 2.4E+02 0.0053 29.7 8.7 92 257-351 33-132 (1117)
487 PRK08691 DNA polymerase III su 34.8 6.2E+02 0.013 27.4 14.2 100 114-216 165-278 (709)
488 PRK11639 zinc uptake transcrip 34.5 2.2E+02 0.0048 24.2 7.5 58 175-233 18-75 (169)
489 PF04910 Tcf25: Transcriptiona 34.5 4.5E+02 0.0098 25.7 20.1 177 152-350 14-221 (360)
490 PF10475 DUF2450: Protein of u 34.0 4.1E+02 0.0088 25.0 12.8 54 256-315 102-155 (291)
491 PF12926 MOZART2: Mitotic-spin 33.9 2E+02 0.0042 21.3 8.0 41 169-209 29-69 (88)
492 PF15297 CKAP2_C: Cytoskeleton 33.8 4.4E+02 0.0096 25.4 9.9 62 303-366 119-184 (353)
493 COG2137 OraA Uncharacterized p 33.4 3.1E+02 0.0068 23.5 11.3 39 447-487 88-126 (174)
494 COG2178 Predicted RNA-binding 33.4 3.3E+02 0.0072 23.8 10.6 16 299-314 133-148 (204)
495 PF14561 TPR_20: Tetratricopep 33.2 2E+02 0.0044 21.4 10.0 55 459-513 19-73 (90)
496 PRK15180 Vi polysaccharide bio 33.0 5.3E+02 0.012 26.1 27.8 118 161-281 302-420 (831)
497 KOG0128 RNA-binding protein SA 33.0 6.8E+02 0.015 27.3 33.3 361 147-519 112-555 (881)
498 PRK13184 pknD serine/threonine 32.7 7.7E+02 0.017 27.8 30.4 184 336-525 670-867 (932)
499 PF08311 Mad3_BUB1_I: Mad3/BUB 32.6 2.6E+02 0.0056 22.4 12.6 113 117-243 10-124 (126)
500 PF08314 Sec39: Secretory path 32.6 5.8E+02 0.013 27.8 12.0 254 155-410 358-651 (715)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-61 Score=509.14 Aligned_cols=414 Identities=20% Similarity=0.335 Sum_probs=393.9
Q ss_pred HHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 112 VRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVR 191 (534)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 191 (534)
+..++..+. ..+++..|+++|++|....-..++...++.++..|.+.|.+++|+.+++.|.. |+..+|+.++.
T Consensus 373 ~~~~y~~l~---r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~ 445 (1060)
T PLN03218 373 YIDAYNRLL---RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS 445 (1060)
T ss_pred HHHHHHHHH---HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 344444443 34578999999999997655667777888999999999999999999999975 78999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ++.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999975 688999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE--VGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 578999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 009470 349 KRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428 (534)
Q Consensus 349 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (534)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 429 TYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 429 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.+ +.||..+|+.++.+|
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCC
Q 009470 509 RRAGQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 509 ~~~g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
++.|++++|.+++++|.+.|+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999874
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-60 Score=504.80 Aligned_cols=403 Identities=17% Similarity=0.306 Sum_probs=386.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVH 204 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 204 (534)
.+.+..|+.+|..+.. ++..+|+.++.+|++.|+++.|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 419 ~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred CCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3458899999998763 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--C
Q 009470 205 AFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM--A 281 (534)
Q Consensus 205 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 281 (534)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ++.||..+|+.||.+|++.|++++|.++|++|.+ .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999975 6899999999999999999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 282 GIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 282 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (534)
.+|.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----c------
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR----A------ 511 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------ 511 (534)
++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.+ +.||..+|+.++..|.+ .
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999987 89999999999876532 1
Q ss_pred -------------CCHHHHHHHHHHHHHcCCCCCC
Q 009470 512 -------------GQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 512 -------------g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
+..++|..+|++|++.|+.|+.
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 2346899999999999999974
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-56 Score=474.76 Aligned_cols=401 Identities=20% Similarity=0.284 Sum_probs=299.6
Q ss_pred CChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009470 107 ISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTF 186 (534)
Q Consensus 107 ~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 186 (534)
+++.++..++..|...+ .+..+..++..+.+. |+.++..+|+.++.+|++.|+++.|.++|++|.+ +|..+|
T Consensus 121 ~~~~t~~~ll~a~~~~~---~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~ 192 (697)
T PLN03081 121 LPASTYDALVEACIALK---SIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASW 192 (697)
T ss_pred CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeH
Confidence 44555556665554332 345566666665543 5666666666666666666666666666666653 345666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhc
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 265 (534)
+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+ ++.+|..+|++|+.+|++.
T Consensus 193 n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 666666666666666666666666666666666666666666666666666666665543 5667777788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY 345 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (534)
|++++|.++|++|.+ +|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 273 g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 888888888888753 5777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 009470 346 NQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP 425 (534)
Q Consensus 346 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (534)
..|.+.|+.+|..+|+.||.+|++.|++++|.++|++|.+ +|..+||.|+.+|++.|+.++|.++|++|.+.|+.|
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888888888888888888888888754 577788888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEE-NEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMV 504 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 504 (534)
|..||+.++.+|++.|.+++|.++|++|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~L 500 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAAL 500 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHH
Confidence 888888888888888888888888888865 578888888888888888888888888877665 257888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 009470 505 LQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 505 ~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+.+|...|+++.|.++++++.+.
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCC
Confidence 88888888888888888877643
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-55 Score=467.10 Aligned_cols=407 Identities=17% Similarity=0.291 Sum_probs=382.7
Q ss_pred CCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 009470 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDT 185 (534)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 185 (534)
.+++.+...++.... ..+.++.|.++|+.+.+ ++..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 155 ~~~~~~~n~Li~~y~---k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 155 EPDQYMMNRVLLMHV---KCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred CcchHHHHHHHHHHh---cCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 455666666765544 34568999999998863 4778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
|+.++.+|++.|+.+.+.+++..+.+.|+.+|..+|+.++.+|++.|++++|.++|++|.. +|..+||+++.+|++.
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999975 5999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY 345 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (534)
|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCC
Q 009470 346 NQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD-LKCE 424 (534)
Q Consensus 346 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 424 (534)
++|. .+|..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9997 4789999999999999999999999999999999999999999999999999999999999999975 6999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-CHHHHHH
Q 009470 425 PNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP-GSSVYEM 503 (534)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 503 (534)
|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|+..|+++.|.++++++.+. .| +..+|..
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~---~p~~~~~y~~ 533 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM---GPEKLNNYVV 533 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC---CCCCCcchHH
Confidence 99999999999999999999999998776 57899999999999999999999999999999864 45 4678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 009470 504 VLQQLRRAGQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 504 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
+++.|.+.|++++|.+++++|.++|+.+.|
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 999999999999999999999999998655
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-54 Score=467.80 Aligned_cols=315 Identities=17% Similarity=0.249 Sum_probs=218.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+.+..|+++|+.+.. ++..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.++++.+.++
T Consensus 135 g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 135 GELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred CChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 456677777777653 356678888888888888888888888888778888888877777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
+..|.+.|+.||..+++.++.+|++.|++++|.++|++|.. +|..+||+++.+|++.|++++|+++|++|.+.|+.|
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 77777777777777778888888888888888888888864 577888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.+|.
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~ 362 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMIS 362 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHH
Confidence 8777777777777777777777777777777777777777776666666666666666666654 345555666666
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666655555555555555555555555555555555555555554444444444444444444444
Q ss_pred HHHHHHH
Q 009470 446 VLKLKKE 452 (534)
Q Consensus 446 a~~l~~~ 452 (534)
|.++|++
T Consensus 443 A~~vf~~ 449 (857)
T PLN03077 443 ALEVFHN 449 (857)
T ss_pred HHHHHHh
Confidence 4444433
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-53 Score=459.33 Aligned_cols=385 Identities=18% Similarity=0.251 Sum_probs=265.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF 206 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 206 (534)
+++.|..+|+.+.. ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++
T Consensus 237 ~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 237 DVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred CHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 34555555555432 2445566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 207 NRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 207 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+||.++.+|++.|++++|+++|++|.+.|+.||
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 6666666666666666666666666666666666666653 4666677777777777777777777777766666667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 287 VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 287 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.+|.+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~ 464 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAG 464 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHH
Confidence 6677666666666666666666666666666666666666666666666666666666666642 445556666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------------------
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC----------------------- 423 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----------------------- 423 (534)
|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 465 ~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 6666666666666666654 3556666665555544444444444444444333332
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009470 424 -------EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP 496 (534)
Q Consensus 424 -------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 496 (534)
.+|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+..++.|
T Consensus 544 ~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 4577788888888888899999999999999989999999999999999999999999999999986666889
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 497 GSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
+..+|+.++++|.+.|++++|.+++++|
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 9999999999999999999999998887
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.9e-26 Score=250.60 Aligned_cols=386 Identities=12% Similarity=0.078 Sum_probs=231.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+++..|...|+.+.... +.+...+..+..++.+.|++++|..+++++.+.+ +.+...+..++..|.+.|++++|+++
T Consensus 513 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 34445555555544321 2234455555555555555555555555554443 23444555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
++++.+.. +.+...|..+...+...|++++|...|+++.+..+.+...+..++..+.+.|++++|..+++++.+.. +.
T Consensus 590 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 590 LNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 55555432 33445555555555556666666666655554444455555555566666666666666665555432 12
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+++.+.+ |+..++..++.
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 34555555566666666666666666665554 3345555556666666666666666666666543 33355555666
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
++.+.|++++|.+.++++.+... .+...+..+...+...|+.++|.+.|+++.+.. +.+...++.+...+...|+ ++
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HH
Confidence 66666666666666666665532 355666666666667777777777777776654 3456666666777777776 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
|+..++++.+.. +-+..++..+...+...|++++|.++++++++.+ +.+..++..+..++.+.|+.++|.+++++|+
T Consensus 822 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777666642 3345556667777777888888888888887765 3367777778888888888888888887775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=4.9e-25 Score=243.29 Aligned_cols=390 Identities=14% Similarity=0.145 Sum_probs=278.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+++.+|...|+.+.+.. +.+...+..+...+.+.|++++|.+.++.+.+.+ +.+..++..+...+.+.|++++|..+
T Consensus 479 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44556666666555432 2344455556666666666666666666666554 34556666666666667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
++++.+.+ +.+...+..++..+.+.|++++|.++++.+....+.+..+|..++..+.+.|++++|...|+++.+.+ +.
T Consensus 556 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 556 LEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 76665543 34455566667777777777777777777766666677777777777777777777777777776653 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
+...+..+...+.+.|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 45566677777777777777777777777654 3456677777777777777777777777777665 456667777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
.+...|++++|.+.++++...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 7888888888888888887764 344666777778888888888888888877654 3467777888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
|..+++++.+.. +.+...+..+...+...|+ .+|+.+++++.+.. +.+...+..+...+...|++++|.+.+++++
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888764 5677778888888888888 77888888888753 3455667778888888999999999999998
Q ss_pred HcCC
Q 009470 526 DRGF 529 (534)
Q Consensus 526 ~~g~ 529 (534)
+.+.
T Consensus 865 ~~~~ 868 (899)
T TIGR02917 865 NIAP 868 (899)
T ss_pred hhCC
Confidence 8764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=3.1e-22 Score=198.94 Aligned_cols=297 Identities=14% Similarity=0.178 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN---VYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A 306 (534)
..|++++|...|+++....+.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444443333444445555555555555555555555444321111 12344445555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHHcCChHHHHHHHHH
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD----TITYNFLIDCHCKDGKLEDAIKVLNS 382 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (534)
.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555555432 23444555555555555555555555555554331111 11234455555666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 383 MVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV 462 (534)
Q Consensus 383 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 462 (534)
+.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++++.+. .|+.
T Consensus 206 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 282 (389)
T PRK11788 206 ALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA 282 (389)
T ss_pred HHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 665431 2344555666666666666666666666665432222345566666777777777777777776664 3455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCC
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR---AGQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
..+..++..+.+.|++++|.++++++++. .|+...+..++..+.. .|+.+++..++++|.++++.|+|
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 55566666777777777777777776663 4666666666665553 34666777777777776666665
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.2e-21 Score=192.77 Aligned_cols=301 Identities=12% Similarity=0.072 Sum_probs=181.0
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 009470 156 NLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD---KIAFSIVISILCRKR 232 (534)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g 232 (534)
..+...|+++.|...|+++.+.+ +.+..++..+...+...|++++|+++++.+.+.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34556678888888888887765 34566777788888888888888888887776432111 234566667777777
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV----YTYSIVIDALCRCGQITRAHD 308 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~ 308 (534)
++++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++|.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777776655556667777777777777777777777777665432211 123445555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC 388 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 388 (534)
.++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|+..|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 666666543 223445555566666666666666666666554311113345555566666666666666666655542
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 009470 389 NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT---SKSTDMVLKLKKEMEENEVEPNV 462 (534)
Q Consensus 389 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~l~~~m~~~~~~p~~ 462 (534)
|+...+..++..+.+.|++++|.++++++.+. .|+...++.++..++. .|+.+++..++++|.++++.|+.
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33344455555556666666666666555543 3555555555554443 33555566666655554444433
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-20 Score=176.93 Aligned_cols=366 Identities=17% Similarity=0.215 Sum_probs=309.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI-VI 225 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll 225 (534)
-.++|..+..++-..|++++|+.+++.+.+.. +..++.|..+..++...|+.+.|.+.|....+. .|+.....+ +.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45689999999999999999999999999886 457889999999999999999999999998874 476654443 44
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 304 (534)
..+-..|++++|..-+.+..+..+--...|..|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 44556899999999988877766666788999999999999999999999999874 454 567888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD-TITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
+|+..|.+..... +.....+..+...|...|.+|.|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+++.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 9999999887764 335677888888899999999999999999886 344 678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 009470 384 VRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN-TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN- 461 (534)
Q Consensus 384 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~- 461 (534)
..... -.....+.+..++...|.+++|.++|....+.. |. ...++.|...|-+.|++++|+..+++... +.|+
T Consensus 347 L~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 347 LRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 88743 256788899999999999999999999988753 33 45688899999999999999999999887 4665
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 462 VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
...|+.+...|-..|+.+.|++.+.+++. +.|. .+.++.|...+...|+..+|.+-++..++..
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 46889999999999999999999999988 4455 4667889999999999999999999988753
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.3e-18 Score=182.21 Aligned_cols=400 Identities=11% Similarity=0.069 Sum_probs=285.2
Q ss_pred hhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009470 118 KSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG 197 (534)
Q Consensus 118 ~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 197 (534)
.+..+...+.+..|+..|+.+... .+++..|..+..+|.+.|+++.|++.++...+.+ +.+...|..+..+|...|
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 333444556788888888888754 3456778888888888888888888888887765 456778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--------------------------C
Q 009470 198 LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEP--------------------------D 251 (534)
Q Consensus 198 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~ 251 (534)
++++|+..|......+- .+......++..+........+...++.-....+. +
T Consensus 209 ~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 209 KYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 88888888876654321 12222222222211111112222222111000000 0
Q ss_pred H---HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 009470 252 V---IVYTNLVRG---WCRAGNISEAERVFREMKMAG-IQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSI 323 (534)
Q Consensus 252 ~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 323 (534)
. ..+..+... ....+++++|.+.|++..+.+ ..| ....|+.+...+...|++++|+..+++..+.. +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 0 000011100 122367999999999998764 223 45678888888999999999999999998874 33466
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 403 (534)
.|..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|...|++..+... .+...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHH
Confidence 88888899999999999999999998774 55678899999999999999999999999998753 35677888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhCCC
Q 009470 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVN------TYRILITMYCGMGH 477 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~------~~~~li~~~~~~g~ 477 (534)
+.|++++|+..+++..+.. +.+...|+.+...+...|++++|.+.+++..+..-..+.. .++..+..+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999998754 3367889999999999999999999999988753111111 11222223344799
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+++|.++++++++.. +.+...+..+...+.+.|++++|.+.+++..+..
T Consensus 524 ~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 524 FIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999999998853 2344568889999999999999999999987653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3.7e-19 Score=185.83 Aligned_cols=329 Identities=8% Similarity=0.007 Sum_probs=176.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
++..+.+.|++++|..+++...... +-+...+..++.+....|++++|++.|+++.+.. +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3344445566666666665555543 2334445555555555666666666666665532 2334455555555666666
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+++|...+++.....+.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 666666666655544555556666666666666666666666655443222 12222222 2355566666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHH----HHHHHHHHHHCCCC
Q 009470 314 LEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLED----AIKVLNSMVRKGCN 389 (534)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~ 389 (534)
.+....++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++ |...++++.+...
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P- 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS- 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-
Confidence 544322233333344455556666666666666655543 3345555555666666666554 5566666555432
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV-NTYRIL 468 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~~~~~l 468 (534)
.+...+..+...+.+.|++++|...+++..+... .+...+..+...+.+.|++++|...++.+.+. .|+. ..+..+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~ 358 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYA 358 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHH
Confidence 2445555666666666666666666666655432 23444555555666666666666666665553 2222 222233
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
..++...|++++|++.|+++++.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 44555666666666666666553
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.1e-18 Score=194.61 Aligned_cols=394 Identities=11% Similarity=0.049 Sum_probs=262.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CHHHH------------HHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEI-TVDTF------------SILVR 191 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~------------~~li~ 191 (534)
.+++.+|+..|+.+.+.. +.++..+..+..++.+.|++++|...|++..+..... ....| .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 456778888888887642 3467788888888888888888888888877654221 11112 12244
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.+.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|++.|+++....+.+...+..+...|. .++.++|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHH
Confidence 5677888888888888887753 3456677778888888888888888888877665666666655555543 2344555
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009470 272 ERVFREMKMAGIQ--------PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQ 343 (534)
Q Consensus 272 ~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 343 (534)
+.+++.+...... .....+..+...+...|++++|++.+++..+.. +-+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5554433211000 001123334445555666666666666665553 2234445555556666666666666
Q ss_pred HHHHHHHcCCCCChhhHHH--------------------------------------------HHHHHHHcCChHHHHHH
Q 009470 344 VYNQMKRLGCEADTITYNF--------------------------------------------LIDCHCKDGKLEDAIKV 379 (534)
Q Consensus 344 ~~~~~~~~g~~~~~~~~~~--------------------------------------------li~~~~~~g~~~~A~~~ 379 (534)
.++++.+.. +.+...+.. +...+...|+.++|.++
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 666655432 222222222 23445555666666665
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE 459 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 459 (534)
++. .+.+...+..+...+.+.|++++|++.|+++.+.. +.+...+..++..|...|++++|.+.++...+.. +
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 551 23455667788889999999999999999998875 3467888999999999999999999999887652 3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC
Q 009470 460 PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP----GSSVYEMVLQQLRRAGQLQKHEELVEKMVD-RGFTA 531 (534)
Q Consensus 460 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~g~~~ 531 (534)
.+...+..+..++...|++++|.+++++++....-.| +...+..+...+...|++++|.+.+++.+. .|+.|
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4556677788889999999999999999987542112 224566678888999999999999999864 34443
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5e-18 Score=189.31 Aligned_cols=368 Identities=11% Similarity=0.017 Sum_probs=279.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHH----------
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP-DKIAF---------- 221 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~---------- 221 (534)
.....+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|++.|++..+..-.. ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34566778999999999999998875 4578899999999999999999999999998754211 11111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 009470 222 --SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299 (534)
Q Consensus 222 --~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (534)
......+.+.|++++|++.|+++....+.+...+..+...+...|++++|++.|+++.+... .+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-
Confidence 12244677899999999999999888788889999999999999999999999999987632 24556666666664
Q ss_pred cCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 009470 300 CGQITRAHDVFAEMLEVGCE--------PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDG 371 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 371 (534)
.++.++|+.+++.+...... .....+..+...+...|++++|++.|++..+.. +.+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 56789999988765432100 012245566778889999999999999998875 446778888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------------------------------
Q 009470 372 KLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL------------------------------ 421 (534)
Q Consensus 372 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------------------------------ 421 (534)
++++|...++++.+.... +...+..+...+.+.|+.++|...++.+...
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999999876422 3333333333334444444444444332110
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 422 ---------KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 422 ---------~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
..+.+...+..+...+.+.|++++|++.+++..+.. +.+...+..++..+...|++++|++.++.+.+..
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 113455567778888999999999999999998864 5567888899999999999999999999888743
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 493 CLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 493 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+.+...+..+..++...|++++|.+++++++...
T Consensus 668 --p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 --NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred --CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 3345667778888899999999999999988753
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=9.4e-19 Score=182.79 Aligned_cols=360 Identities=9% Similarity=0.035 Sum_probs=286.0
Q ss_pred HccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSR--NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASE 236 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 236 (534)
.+..+++..--+|....+. .-..+..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 3445555444444433222 001123345567788889999999999999998764 3345566666677788999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|.+.++++....|.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999998888899999999999999999999999999998753 225677888999999999999999999988776
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009470 317 GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFN 396 (534)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 396 (534)
... +...+..+ ..+...|++++|...++.+.+..-.++...+..+..++.+.|++++|...++++.+... .+...+.
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRR 250 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 432 33344333 34788999999999999988764334455556667889999999999999999998753 3677888
Q ss_pred HHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 397 MIFRCISKLGDVNG----AHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 397 ~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
.+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 89999999999986 899999998865 3367889999999999999999999999999864 44566778888999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPGSS-VYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
.+.|++++|++.++++.+.. |+.. .+..+..++...|+.++|...++++.+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999854 5543 34445678899999999999999988763
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2e-17 Score=173.34 Aligned_cols=360 Identities=11% Similarity=0.009 Sum_probs=262.7
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 123 RHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEA 202 (534)
Q Consensus 123 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 202 (534)
...+++..|+..++.+.+.. +.....+..+..++...|++++|...|..+...+...+ .....++..+........+
T Consensus 171 ~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~ 247 (615)
T TIGR00990 171 NALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLKKFAESKA 247 (615)
T ss_pred HHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHH
Confidence 34467899999999998753 45677899999999999999999998877655532222 2222222222221111222
Q ss_pred HHHHHHHHHcCCCCCHH------------------------------HHHHHHHH---HHhcCCHHHHHHHHHHhhcc--
Q 009470 203 VHAFNRMEEYGCAPDKI------------------------------AFSIVISI---LCRKRRASEAQSFFDSLKDK-- 247 (534)
Q Consensus 203 ~~~~~~m~~~g~~~~~~------------------------------~~~~ll~~---~~~~g~~~~A~~~~~~~~~~-- 247 (534)
...++.-.. ..|... .+..+... ....+++++|.+.|++....
T Consensus 248 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 248 KEILETKPE--NLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred HHHHhcCCC--CCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 222111000 000000 00000000 01236789999999987653
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 248 -FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 248 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
.+.....|+.+...+...|++++|+..+++..+... -....|..+...+...|++++|...++++.+.. +.+...|.
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 403 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYY 403 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 244567889999999999999999999999987632 236678888999999999999999999998875 44678899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG 406 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 406 (534)
.+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +-+...++.+...+...|
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 99999999999999999999999875 4567778888999999999999999999998864 335788999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTV------TYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 480 (534)
++++|.+.|++..+.....+.. .++..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999988754221111 12222233445799999999999988764 3445678889999999999999
Q ss_pred HHHHHHHHHHcC
Q 009470 481 AYKYIREMIEEK 492 (534)
Q Consensus 481 A~~~~~~~~~~~ 492 (534)
|+++|+++.+..
T Consensus 561 Ai~~~e~A~~l~ 572 (615)
T TIGR00990 561 ALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHh
Confidence 999999998853
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.8e-17 Score=176.84 Aligned_cols=409 Identities=11% Similarity=0.058 Sum_probs=312.8
Q ss_pred CCCCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 009470 104 AHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITV 183 (534)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 183 (534)
...++|..|...+.... ..++..+|+..+..+... -+.+...+..+...+.+.|++++|..++++..+.. +.+.
T Consensus 10 ~~~~~~~~~~d~~~ia~---~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~ 83 (765)
T PRK10049 10 KSALSNNQIADWLQIAL---WAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQND 83 (765)
T ss_pred ccCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 34567777777665543 345678899888888752 23456679999999999999999999999988875 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++....|.+...+..++..+.
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888899999999999999999999998763 44556 8888889999999999999999999988889999889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HH--
Q 009470 264 RAGNISEAERVFREMKMAGIQPNV------YTYSIVIDALC-----RCGQI---TRAHDVFAEMLEV-GCEPNSI-TF-- 325 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~-- 325 (534)
..|+.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 162 ~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 162 NNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 99999999999986653 2221 11122222222 22334 7788899988864 2223221 11
Q ss_pred --HHHHHHHHHcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 009470 326 --NNLMRVHVKASRTEKVLQVYNQMKRLGCE-ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP---NASTFNMIF 399 (534)
Q Consensus 326 --~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~l~ 399 (534)
...+..+...|++++|+..|+++.+.+.. |+ .....+...|...|++++|...|+++.+..... .......+.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11134556789999999999999987632 22 222335778999999999999999988753221 134566677
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKC-----------EPN---TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTY 465 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~ 465 (534)
.++.+.|++++|.+.++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 788999999999999999987531 123 2345667788899999999999999998863 6667888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 466 RILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
..+...+...|++++|++.++++++.. +.+...+...+..+.+.|++++|+.+++++++.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999853 334566777778899999999999999999875
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-18 Score=166.25 Aligned_cols=385 Identities=16% Similarity=0.118 Sum_probs=314.1
Q ss_pred ChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 009470 108 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS 187 (534)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 187 (534)
.|..-+..-.....++..+.+..|+..+..+.+.. +...+.|-.+..++...|+.+.|.+.|.+..+.+ +.......
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s 188 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARS 188 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhc
Confidence 34333333333344556678899999999998753 2356789999999999999999999999988875 22333444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN 267 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (534)
.+...+-..|+.++|...|.+..+.. +--..+|..|...+-..|+.-.|++.|++...-.+.-...|-.|...|-..+.
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 55556666899999999998887743 22356788888889999999999999999887666667899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 268 ISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 268 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
+++|...|.+.... .|+ ...+..+...|...|.++-|+..|++.++.. +.-...|+.|..++-..|+..+|.+.|.
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999998765 344 6678888888999999999999999999874 3347899999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 009470 347 QMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN 426 (534)
Q Consensus 347 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (534)
+..... +.-....+.|...|...|.+++|..+|....+-... -...++.+...|-+.|++++|+..|++..+. .|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 998764 445678899999999999999999999998876321 3567899999999999999999999999875 455
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 009470 427 -TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS-SVYEM 503 (534)
Q Consensus 427 -~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ 503 (534)
...|+.+...|-..|+++.|++.+.+.+.. .|. ...++.|...|-..|++.+|++-+++.++ ++||. ..|..
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk---lkPDfpdA~cN 495 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK---LKPDFPDAYCN 495 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc---cCCCCchhhhH
Confidence 568899999999999999999999999875 443 56788999999999999999999999998 45653 45666
Q ss_pred HHHHH
Q 009470 504 VLQQL 508 (534)
Q Consensus 504 l~~~~ 508 (534)
++.++
T Consensus 496 llh~l 500 (966)
T KOG4626|consen 496 LLHCL 500 (966)
T ss_pred HHHHH
Confidence 65554
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.2e-16 Score=170.64 Aligned_cols=375 Identities=13% Similarity=0.051 Sum_probs=287.8
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 144 FVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI 223 (534)
Q Consensus 144 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 223 (534)
.+.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.++|++..+.. +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 35677778888889999999999999999988743 4566789999999999999999999999988753 445677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQI 303 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 303 (534)
+...+...|+.++|+..++++....+.+.. +..+...+...|+.++|+..++++.+.... +...+..+...+...|..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 888999999999999999999888888888 999999999999999999999999986433 455666778888889999
Q ss_pred HHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----HcCCh---hHHHHHHHHHHHc-CCCCChh-hHH----HH
Q 009470 304 TRAHDVFAEMLEVGCEPNS------ITFNNLMRVHV-----KASRT---EKVLQVYNQMKRL-GCEADTI-TYN----FL 363 (534)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-g~~~~~~-~~~----~l 363 (534)
++|++.++.... .|+. .....+++... ..+++ ++|++.++.+.+. ...|+.. .+. ..
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999998886654 2221 11122222222 22234 7788888888754 2223221 111 11
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHh
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRKGCN-PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP---NTVTYNILMQMFAT 439 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~ 439 (534)
+..+...|++++|...|+.+.+.+.. |+. ....+...+...|++++|+..|+++.+..... .......+..++.+
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 34556779999999999999987532 332 22335778999999999999999987653211 13456667778899
Q ss_pred cCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 440 SKSTDMVLKLKKEMEENE-----------VEPN---VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 440 ~g~~~~a~~l~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
.|++++|.++++.+.+.. -.|+ ...+..+...+...|++++|+++++++.... +.+...+..+.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA 400 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYA 400 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 999999999999998752 1123 2345667778899999999999999999864 55677888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 009470 506 QQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 506 ~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
..+...|++++|++.++++++..
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999998753
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.5e-15 Score=157.72 Aligned_cols=393 Identities=11% Similarity=0.073 Sum_probs=278.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHS-PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
.+++..|+..|+.+.+..+ .+ +.++ .++.+++..|+.++|+..+++..... +........+...|...|++++|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCCHHHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566788888888876432 22 2334 77778888888888888888877322 233444444566888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI 283 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 283 (534)
++|+++.+.. +-+...+..++..+...++.++|++.++++....+ +...+..++..+...++..+|++.++++.+.+.
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 8888888754 34456666777788888888888888888876543 344444444444445666668888888887642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH------------------------------------------------HHHHHHHHHH
Q 009470 284 QPNVYTYSIVIDALCRCGQITR------------------------------------------------AHDVFAEMLE 315 (534)
Q Consensus 284 ~p~~~~~~~ll~~~~~~g~~~~------------------------------------------------A~~~~~~m~~ 315 (534)
. +...+..++..+.+.|-... |+.-++.+..
T Consensus 201 ~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 T-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred C-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 2 34444444444444443332 3333333332
Q ss_pred c-CCCCCH-HH----HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--
Q 009470 316 V-GCEPNS-IT----FNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG-- 387 (534)
Q Consensus 316 ~-~~~~~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 387 (534)
. +-.|.. .. ..-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|..+++++....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 111321 11 223345778899999999999999998877677788999999999999999999999987653
Q ss_pred ---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 009470 388 ---CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC-------------EPNTV-TYNILMQMFATSKSTDMVLKLK 450 (534)
Q Consensus 388 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~a~~l~ 450 (534)
..++......|.-++...+++++|..+++++.+... .||-. .+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122444467889999999999999999999987321 12222 3345677788899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 451 KEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 451 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+++.... +-|......+...+...|.+.+|.+.++.+.... +-+..+....+..+...|++++|..+.+.+.+.
T Consensus 440 e~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~--P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 440 EDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA--PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC--CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9998764 7788899999999999999999999998777643 334566777888889999999999999887654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=2e-14 Score=151.02 Aligned_cols=375 Identities=10% Similarity=0.058 Sum_probs=278.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
..+.+...-+-...+.|+++.|++.|++..+.+..-....+ .++..+...|+.++|+..+++.... .+.....+..+.
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA 109 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAA 109 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHH
Confidence 34555555666778999999999999999887632112233 8888889999999999999998721 122334444446
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
..+...|++++|+++|+++.+..+.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 68888999999999999999988889999999999999999999999999999875 4565566445444445667767
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH----------------------------------------
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY---------------------------------------- 345 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~---------------------------------------- 345 (534)
|++.++++.+.. +-+...+..++.++.+.|-...|.++.
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999999885 335555566666665555443333332
Q ss_pred --------HHHHHc-CCCCCh-hhH----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009470 346 --------NQMKRL-GCEADT-ITY----NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGA 411 (534)
Q Consensus 346 --------~~~~~~-g~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 411 (534)
+.+... +-.|.. ..| .-.+.++...|++.++.+.++.+...+.+.-..+-..+..+|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 222221 111221 112 234456788899999999999999888665666888999999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHHHHHHHH
Q 009470 412 HRMYGKMKDLK-----CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-------------VEPNV-NTYRILITMY 472 (534)
Q Consensus 412 ~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-------------~~p~~-~~~~~li~~~ 472 (534)
+.+|+.+.... ..++......|.-+|...+++++|..+++.+.+.. ..||- ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999986543 12234445778889999999999999999998731 11222 2344566778
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
...|+..+|.+.++++.... +-|......+.+.+...|++.+|++.++.+...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 89999999999999998875 567888889999999999999999999776554
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=3.2e-14 Score=130.80 Aligned_cols=397 Identities=13% Similarity=0.203 Sum_probs=287.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc--CChH-HHHHHHHHHHhCC-------------------CCCCHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKV--RQFD-LAWHFIDLMKSRN-------------------VEITVD 184 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~-~A~~~~~~m~~~~-------------------~~~~~~ 184 (534)
.+.++.-+++.+... +.+.++.+-..+++.-+-. .++. .-|+.|-.|...| .+-+..
T Consensus 130 EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e 208 (625)
T KOG4422|consen 130 EVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE 208 (625)
T ss_pred ccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence 455666777777744 6677777666655543322 2211 1223333333221 234567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~ 263 (534)
++..||.++++--..+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|.. +..||..|+|+++.+..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 9999999999999999999999999887779999999999987553322 566677654 68999999999999999
Q ss_pred hcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc----CCC----CCHHHHHHHHH
Q 009470 264 RAGNISE----AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR-AHDVFAEMLEV----GCE----PNSITFNNLMR 330 (534)
Q Consensus 264 ~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~~----~~~----~~~~~~~~li~ 330 (534)
+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... .++ -|...|...+.
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 9998765 56788999999999999999999999999887644 44555554432 222 25666778888
Q ss_pred HHHHcCChhHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 331 VHVKASRTEKVLQVYNQMKRLG----CEAD---TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403 (534)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 403 (534)
.|.+..+.+-|.++..-+.... +.++ ..-|..+..+.|+....+.-...|+.|.-.-+-|+..+...++++..
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD 444 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence 8989999999988877665321 2232 23466788888999999999999999999888899999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHH-------HHHHHHCCCCCCH
Q 009470 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK-ST--------DM-----VLKL-------KKEMEENEVEPNV 462 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----a~~l-------~~~m~~~~~~p~~ 462 (534)
-.|.++-.-+++..++..|..-+...-.-++..+++.+ .. .. |..+ -.+|.+. ....
T Consensus 445 v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~ 522 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPA 522 (625)
T ss_pred hcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCCh
Confidence 99999999999999998875555555555555555544 11 10 1111 1223333 4455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYE---MVLQQLRRAGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 530 (534)
...+.+.-.+.+.|++++|.++|....+++.--|.....+ .+++.-.+..+.-.|...++.|...++.
T Consensus 523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 6667777788999999999999999876654444444444 5666677889999999999999877654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=1.8e-13 Score=146.86 Aligned_cols=218 Identities=8% Similarity=0.039 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 009470 301 GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVL 380 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (534)
|+.++|+..+.+.... .|+......+...+...|++++|...|+++... .++...+..+..++.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555566655555544 344433333444456778888888888876544 344445566677778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP 460 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 460 (534)
++..+.+. .+...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|...+++..+.. +.
T Consensus 566 ~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 88877642 23333333344444568899999999888876 3567888888888999999999999999988864 55
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 461 NVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 461 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+...+..+..++...|++++|+..++++++.. +-+...+..+..++...|++++|+..+++.++..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66778888888999999999999999998854 3456778888889999999999999999988754
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4.6e-14 Score=129.79 Aligned_cols=373 Identities=15% Similarity=0.218 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHH-HHHHHHHHHHcC------------
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYV--RAGLAAE-AVHAFNRMEEYG------------ 213 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~-A~~~~~~m~~~g------------ 213 (534)
++-|.++.+. ..|.+.++.-+|+.|...|++.+...-..|++.-+ ...++-- -.+.|-.|...|
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3455555544 56889999999999999999988877766665432 2222221 123344443332
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 214 -------CAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 214 -------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
.+.+..++..+|.++|+--..+.|.+++++-.. +.+.+..+||.+|.+-.-..+ .+++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 355678999999999999999999999998764 467789999999876543322 68899999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHH----cCCC--
Q 009470 286 NVYTYSIVIDALCRCGQITR----AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK-VLQVYNQMKR----LGCE-- 354 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~----~g~~-- 354 (534)
|..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++.. ..+.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998765 56788899999999999999999999999888754 4444444432 2222
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 009470 355 --ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG----CNPN---ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP 425 (534)
Q Consensus 355 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (534)
.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 245556777777888889998988877665431 1222 2345667778888889999999999998777788
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CH--------HH-----HHHHH------
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMG-HW--------NN-----AYKYI------ 485 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~------ 485 (534)
+..+...++++..-.|.++-.-++|..++..|...+...-.-+...+|+.. +. .. |..++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999886666666666666666654 11 11 11111
Q ss_pred -HHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 486 -REMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 486 -~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.++.+ ..-.....+..+-.+.+.|+.++|.+++..+.++|-
T Consensus 512 ~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 512 PIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 11221 123344567777788999999999999999977653
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=2.5e-13 Score=145.74 Aligned_cols=355 Identities=12% Similarity=0.098 Sum_probs=268.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC---H
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY--GCAPDKIAFSIVISILCRKRR---A 234 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~---~ 234 (534)
..+...++...++.|.+.. +-+.....-+.-...+.|+.++|.++|+..... +...+.....-++..|.+.+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 3466777777777777663 335566666777778899999999999887652 112344445567777776655 2
Q ss_pred HHHHHH-------------------------HHHhhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 235 SEAQSF-------------------------FDSLKDKFEP--DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV 287 (534)
Q Consensus 235 ~~A~~~-------------------------~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 287 (534)
.++..+ +.......++ +...|..+..++.. ++.++|...+.+.... .|+.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~ 509 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDA 509 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCch
Confidence 223222 2222222355 78889999988887 8999999988888765 3565
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009470 288 YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCH 367 (534)
Q Consensus 288 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 367 (534)
.....+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+.. +.+...+..+....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 54444455557899999999999998665 4455556677888899999999999999998765 33333444444455
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
.+.|++++|...+++..+.. |+...+..+..++.+.|+.++|+..+++..+.. +.+...++.+...+...|+.++|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 56699999999999999874 578889999999999999999999999999876 336778888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS-SVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
..+++..+.. +-+...+..+..++...|++++|+..++++++. .|+. .+.........+..+++.+.+-+++...
T Consensus 664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998863 556788999999999999999999999999984 4554 5566667777777888888887777655
Q ss_pred cC
Q 009470 527 RG 528 (534)
Q Consensus 527 ~g 528 (534)
.+
T Consensus 740 ~~ 741 (987)
T PRK09782 740 FS 741 (987)
T ss_pred cC
Confidence 43
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.5e-14 Score=144.16 Aligned_cols=423 Identities=14% Similarity=0.134 Sum_probs=248.0
Q ss_pred hhhccccCCCCChHHHHHHHHhhh---cccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 009470 97 GFSQISTAHSISPSTVRHVIEKSC---GVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDL 173 (534)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 173 (534)
+...+..+.+++|..+..++...- .......+..++..+..+-.. ...+|.+.+.+...+.-.|+++.++.+...
T Consensus 218 a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 218 ALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 333444445667766665554431 112223344555555555442 235666777777777777777777777766
Q ss_pred HHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 174 MKSRNV--EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI--AFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 174 m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
+..... ..-...|--+.++|-..|++++|...|.+..+. .++.+ .+..+.+.+.+.|+++.+...|+.+....+
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 655421 112345666777777777777777777655543 23332 233456666677777777666666655555
Q ss_pred CCHHHHHHHHHHHHhcC----CHHHH---------------------------------HHHHHHHH----HCCCCCCHH
Q 009470 250 PDVIVYTNLVRGWCRAG----NISEA---------------------------------ERVFREMK----MAGIQPNVY 288 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g----~~~~A---------------------------------~~~~~~m~----~~g~~p~~~ 288 (534)
.+..+...|...|...+ ..+.| +.+|.... ..+..+...
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 55555555555444443 22333 33333222 223334455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hh
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEV---GCEPNS------ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD-TI 358 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~ 358 (534)
..|.+...+...|++++|...|...... ...++. .+-..+.+.+-..++.+.|.++|..+.+.. |. ..
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHH
Confidence 5555666666667777777776665543 111222 122223444445555666666665555431 22 11
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------------------------------CCCCHHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKG-----------------------------------CNPNASTFNMIFRCIS 403 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------------------------------~~~~~~~~~~l~~~~~ 403 (534)
.|--++......+...+|...+++....+ ..+|......|.+.|.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 12222211122234444544444443221 1133333344444332
Q ss_pred ------------hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 404 ------------KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 404 ------------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
..+..++|+++|.++.+... -|...-|.+.-.++..|++++|..+|.+..+.. .-...+|-.+.++
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHH
Confidence 23456778888888887653 377777888888889999999999999998864 3345678888899
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 472 YCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
|...|+|..|++.|+...++..-..+..+...|.+++.+.|++.+|.+.+...+..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999998887755567788889999999999999999988877664
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.9e-13 Score=135.66 Aligned_cols=394 Identities=12% Similarity=0.121 Sum_probs=245.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKV---RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
....|+..|..+.+..+ -+..++-.|..+-... ..+..+..++...-..+ ..++...+.|...|.-.|+++.+.
T Consensus 214 ~~~~a~~a~~ralqLdp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred chhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHH
Confidence 34578888888876432 2233333333333333 34556666666665554 456789999999999999999999
Q ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 204 HAFNRMEEYGC--APDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPD-VIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 204 ~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
++...+..... ..-...|-.+.++|-..|++++|...|.+.....+.+ +..+.-+.+.|.+.|+++++...|+...+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 99998876432 1224568889999999999999999999877654444 55667789999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----HHcC
Q 009470 281 AGIQPNVYTYSIVIDALCRCG----QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM----KRLG 352 (534)
Q Consensus 281 ~g~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~g 352 (534)
.. +-+..+..+|...|...+ ..++|..++.+..+.- +.|...|-.+...+....-+ .++..|... ...+
T Consensus 371 ~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 371 QL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKG 447 (1018)
T ss_pred hC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcC
Confidence 53 224566666666666554 4455666665555443 33555555555544433322 224444332 2334
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhc------------------
Q 009470 353 CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK---GCNPNA------STFNMIFRCISKL------------------ 405 (534)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~l~~~~~~~------------------ 405 (534)
-.+.....|.+...+...|++++|...|+..... ...++. .+-..+...+-..
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 4455566666666666666666666666655443 111111 1111122222222
Q ss_pred ----------------CChhHHHHHHHHHHhCC-CCC----------------------------------CHHHHHHHH
Q 009470 406 ----------------GDVNGAHRMYGKMKDLK-CEP----------------------------------NTVTYNILM 434 (534)
Q Consensus 406 ----------------g~~~~A~~~~~~m~~~~-~~p----------------------------------~~~~~~~li 434 (534)
+...+|...++...+.. -.| |..+...|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 33444444444433211 111 222222222
Q ss_pred HHHH------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 009470 435 QMFA------------TSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYE 502 (534)
Q Consensus 435 ~~~~------------~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 502 (534)
..|. ..+..++|+++|.+..... +-|...-+.+...++..|++.+|..+|.+..+.. .....+|-
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~l 684 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWL 684 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceee
Confidence 2222 1234567777777777653 5566666777778888999999999999988864 34556788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 503 MVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 503 ~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.+.++|...|++-.|.++|+...+.-+
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999998877644
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=2.4e-13 Score=134.24 Aligned_cols=285 Identities=11% Similarity=0.090 Sum_probs=174.9
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYS--IVIDALCRCGQITRAHD 308 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A~~ 308 (534)
.|++++|++.+....+..+.....|........+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666665555433321111222222233445666666666666666543 23322221 22445566666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHHcCChHHHHHHHH
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT-------ITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666554 334555566666666666666666666666665433211 122222333333344455555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 382 SMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN 461 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 461 (534)
.+.+. .+.+......+...+...|+.++|.+++++..+. .+|.... ++.+.+..++.+++.+..+...+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 55433 2346777778888888888888888888887763 3454322 2334445688888888888887763 555
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 462 VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
...+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+...+.+.|+.++|.+.+++....
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66677888888888888888888888887 4688888888888888888888888888877654
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=3.6e-14 Score=131.28 Aligned_cols=389 Identities=17% Similarity=0.203 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 009470 128 LLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEI----TVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 128 ~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 203 (534)
..+|+..++.+.+..-|+..-..--.+..++.+.+++.+|+++|+.....-... .+...+.+...+.+.|++++|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 345555555555443343333333344556667777788888776655442111 2344555556677788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-------------CCCCHHHHHH-----HHHHHHhc
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK-------------FEPDVIVYTN-----LVRGWCRA 265 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~~-----li~~~~~~ 265 (534)
..|+...+. .|+..+-..|+-++.-.|+.++..+.|.+|..- ..|+....+. .+.-+-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 888877664 366655444555555677777777777776421 1223222222 12222222
Q ss_pred CCHHHHHHHH---HHHHHCCCCCCHHH-------------HHH--------HHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 009470 266 GNISEAERVF---REMKMAGIQPNVYT-------------YSI--------VIDALCRCGQITRAHDVFAEMLEVGCEPN 321 (534)
Q Consensus 266 g~~~~A~~~~---~~m~~~g~~p~~~~-------------~~~--------ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 321 (534)
++ ..|++.+ -+++.--+.|+... +.- -...|.+.|+++.|++++.-+....-+.-
T Consensus 375 ~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 375 NK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 11 1111111 11111111121100 000 01234556666666665555443321110
Q ss_pred HHHHHHH------------------------------------HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 322 SITFNNL------------------------------------MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 322 ~~~~~~l------------------------------------i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
...-+.+ .+.....|++++|.+.|++.....-.- ....-.+.-
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfnigl 532 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGL 532 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcc
Confidence 0000000 001112345555555555555432111 111111222
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
.+-..|+.++|++.|-++...- .-+..+...+...|....+...|++++.+.... ++.|+....-|...|-+.|+-.+
T Consensus 533 t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 3445556666665555443221 124444555555555555555555555554332 23345555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL-RRAGQLQKHEELVEKM 524 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 524 (534)
|.+.+-+--.. ++-+..+...|...|....-+++|+.+|+++.- +.|+..-|..++..| .+.|++++|.++++..
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55544333322 344555555555555555555555555555443 455555555544332 4445555555555554
Q ss_pred HH
Q 009470 525 VD 526 (534)
Q Consensus 525 ~~ 526 (534)
.+
T Consensus 687 hr 688 (840)
T KOG2003|consen 687 HR 688 (840)
T ss_pred HH
Confidence 43
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=3.3e-13 Score=133.93 Aligned_cols=289 Identities=10% Similarity=0.073 Sum_probs=160.4
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
..|+++.|.+.+.+..+..+.....+-.....+.+.|+.+.|.+.+.+..+....+.....-.....+...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555555443322223333444455555566666666665554432111111222234445555666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH-HHHHHHH---HHcCChHHHHHHHHHHHH
Q 009470 310 FAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITY-NFLIDCH---CKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 310 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~---~~~g~~~~A~~~~~~m~~ 385 (534)
++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+ ..-..++ ...+..+++.+.+..+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66665554 224445555555666666666666666666555432 22222 1111111 222233333334444444
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 386 KGC---NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVT---YNILMQMFATSKSTDMVLKLKKEMEENEVE 459 (534)
Q Consensus 386 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 459 (534)
... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+.. +
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 321 1266667777777777777777777777777653 33221 1111122233466777777777776642 3
Q ss_pred CCH--HHHHHHHHHHHhCCCHHHHHHHHHH--HHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 460 PNV--NTYRILITMYCGMGHWNNAYKYIRE--MIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 460 p~~--~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
-|. .....+.+.+.+.|++++|.++|+. ..+ ..|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344 5666788888888888888888884 444 468888888888888888888888888887644
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.6e-12 Score=129.00 Aligned_cols=361 Identities=12% Similarity=0.129 Sum_probs=160.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFF 241 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 241 (534)
|++++|.+++.++.+.. +.....|..|...|-..|+.+++...+-..--.. +-|...|..+.....+.|.+++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 44444444444444443 2233444444444444444444444332222111 223344444444444444444444444
Q ss_pred HHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 242 DSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTY----SIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 242 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
.+..+..|++...+---+..|-+.|+...|..-|.++.....+.|..-+ -.++..|...++.+.|.+.++.....+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 4444444444444444444444444444444444444443211111111 112233333344444444444433311
Q ss_pred -CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---------------------------CCCCChhhHHHHHHHHHH
Q 009470 318 -CEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL---------------------------GCEADTITYNFLIDCHCK 369 (534)
Q Consensus 318 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------------g~~~~~~~~~~li~~~~~ 369 (534)
-..+...++.++..+.+...++.|......+... ++.++..+ --++-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 1122333444444444444444444444433331 01111111 112222333
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 370 DGKLEDAIKVLNSMVRKG--CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 370 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
....+....+.....+.. +.-+...|.-+..++...|++.+|.++|..+......-+...|-.+..+|...|.+++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 333333333333333333 223344555566666666666666666666655443344555666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK-------CLKPGSSVYEMVLQQLRRAGQLQKHEEL 520 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 520 (534)
+.++...... +-+...--.|...+.+.|+.++|.+.+..+..-+ .+.|+........+.+...|+.++-...
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6666665532 2233333444445556666666666665543111 1334444444455556666666665555
Q ss_pred HHHHHH
Q 009470 521 VEKMVD 526 (534)
Q Consensus 521 ~~~~~~ 526 (534)
...|+.
T Consensus 549 ~~~Lv~ 554 (895)
T KOG2076|consen 549 ASTLVD 554 (895)
T ss_pred HHHHHH
Confidence 555543
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.1e-12 Score=129.57 Aligned_cols=290 Identities=10% Similarity=0.073 Sum_probs=137.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 009470 161 VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFS--IVISILCRKRRASEAQ 238 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~A~ 238 (534)
.|+++.|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 36666666555554433111 1122323333345666666666666666542 23332221 2244555666666666
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC 318 (534)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 318 (534)
+.++++.+..|.+...+..+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 6666666555556666666666666666666666666666655433111 111000
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMI 398 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 398 (534)
..+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. .++.... +
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 001112222222222333333333333221 1234444455555555555555555555555443 2222111 1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 009470 399 FRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHW 478 (534)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 478 (534)
+.+.+..++.+++.+..+...+.. +-|...+..+.+.+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 222223355555555555554433 224444555555555555555555555555543 45555555555555555555
Q ss_pred HHHHHHHHHHH
Q 009470 479 NNAYKYIREMI 489 (534)
Q Consensus 479 ~~A~~~~~~~~ 489 (534)
++|.+++++..
T Consensus 378 ~~A~~~~~~~l 388 (398)
T PRK10747 378 EEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=2.3e-12 Score=129.45 Aligned_cols=329 Identities=13% Similarity=0.136 Sum_probs=260.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
...-.|+.++|.+++.+..+.. +-....|.+|...|-..|+.+++...+-......|.|...|..+.....+.|+++.|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3344599999999999998864 567889999999999999999999988887777788999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHH
Q 009470 272 ERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSI----TFNNLMRVHVKASRTEKVLQVYNQ 347 (534)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~ 347 (534)
.-.|.+.++... ++...+---+..|-+.|+...|.+-|.++.+...+.|.. ..-.+++.+...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998743 355555566778899999999999999999875322322 233345667778888999998887
Q ss_pred HHHc-CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHHHH
Q 009470 348 MKRL-GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC---------------------------NPNASTFNMIF 399 (534)
Q Consensus 348 ~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~~~~~~~~~l~ 399 (534)
.... +-..+...++.++..+.+...++.|......+..... .++..+ ..++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 7652 2355677889999999999999999999888876211 122222 2334
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLK--CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
-++...+..+....+.....+.. +.-+...|.-+..+|...|++.+|+.++..+......-+...|..+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 44556666666666666665554 3445678889999999999999999999999987656677899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
+++|++.++.++... +.+...--.|...+.+.|+.++|.+.++.+.
T Consensus 465 ~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999964 3344556678888999999999999998865
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=1.3e-12 Score=129.64 Aligned_cols=132 Identities=9% Similarity=-0.020 Sum_probs=71.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHH
Q 009470 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST---FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT--VTY 430 (534)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 430 (534)
+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.+++..+.. +-|. ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 45555555556666666666666666655542 22211 0111111223355566666666655442 1133 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 431 NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 431 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666666777777777666433333356666666666666777777777766666543
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=7.5e-16 Score=145.29 Aligned_cols=262 Identities=15% Similarity=0.208 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAG-IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA 335 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 335 (534)
.+...+.+.|++++|++++++..... ..-|..-|..+.......|++++|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 34555666666666666664443332 122333334444445556666666666666665542 244455555555 566
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG-CNPNASTFNMIFRCISKLGDVNGAHRM 414 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 414 (534)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655443 2444555566666666777777777776665432 234556666677777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCL 494 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 494 (534)
+++..+... -|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|++++|+.++++..+..
T Consensus 169 ~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-- 244 (280)
T PF13429_consen 169 YRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-- 244 (280)
T ss_dssp HHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--
Confidence 777766531 246666677777777777777777776666542 4455566677777777777777777777777653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 495 KPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 495 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
+.|+.+...+.+++...|+.++|.++..++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44666667777777777777777777666543
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=4.1e-15 Score=140.21 Aligned_cols=261 Identities=12% Similarity=0.153 Sum_probs=98.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRN-VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 231 (534)
.+..++.+.|++++|+++++...... .+.+...|..+.......|+++.|++.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45777778888888888885544333 244566677777777778888888888888876552 345566666666 677
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 232 RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG-IQPNVYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 232 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
+++++|.++++..-+.. ++...+..++..+.+.++++++.++++++.... ...+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888877654432 456667777778888888888888888876532 3446667777777888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009470 311 AEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390 (534)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 390 (534)
++..+.. +-|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 8887764 2256667777778888888888777777776654 4556667777888888888888888888877754 23
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
|..+...+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 67777777788888888888887777654
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=4.2e-12 Score=113.14 Aligned_cols=289 Identities=13% Similarity=0.204 Sum_probs=172.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC----CCHHHHHHHHHHHHhcCCHHHH
Q 009470 196 AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE----PDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 271 (534)
.++.++|+++|-+|.+.. +-+..+--+|.+.|-+.|..+.|+.+...+.+.-. .-..+.-.|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455666666666666532 22333444555666666666666666666554311 1123344566667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHH
Q 009470 272 ERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS----ITFNNLMRVHVKASRTEKVLQVYNQ 347 (534)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~ 347 (534)
+++|..+.+.|.. -......|+..|-...+|++|++.-+++...+-.+.. ..|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7777777664322 3445666777777777777777777777766544331 2344455555556677777777777
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 009470 348 MKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT 427 (534)
Q Consensus 348 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (534)
..+.+ +..+..--.+.+.+...|++++|.+.++...+.+..--..+...+..+|.+.|+.++...++.++.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 76653 233334444556677777777777777777776555455666777777777777777777777776653 233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC---GMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~ 491 (534)
..-..+.+.-....-.+.|...+.+-... .|+...+..++..-. ..|...+-+..++.|+.+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33334444434444445555555444443 677777777776443 234566666666666653
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=2.6e-10 Score=110.79 Aligned_cols=349 Identities=10% Similarity=0.090 Sum_probs=213.9
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 128 LLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDL----MKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 128 ~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
++.|..+.+.+.+ .++-++..|-....+--.+|+.+....++++ +...|+..+...|-.=...|-..|..-.+.
T Consensus 422 YenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 4455556666554 3566777887777777888888888887764 445688888888888888888888888888
Q ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 204 HAFNRMEEYGCAPD--KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 204 ~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
.+.......|+.-. ..||..-.+.|.+.+.++-|..+|....+-++.+...|...+..--..|..++...++++....
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888777776432 4577777778888888888888888777777777777777777666777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 282 GIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 282 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
++-....|-.....+-..|++..|..++....+.. +-+...|-..+.......++++|..+|.+.... .++..+|.
T Consensus 580 -~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~m 655 (913)
T KOG0495|consen 580 -CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWM 655 (913)
T ss_pred -CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhH
Confidence 23344555555666666777777777777776664 235666666667777777777777777766654 35555555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (534)
--+...--.+..++|.+++++..+. ++--...|..+.+.+-+.++++.|.+.|..-.+. ++-....|-.|.+.=-+.|
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence 5555555566666676666666554 1112334444555555555555555444433221 1112223333333333334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
.+-.|..+++...-++ +-+...|...|+.=.+.|+.+.|..++
T Consensus 734 ~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 734 QLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred chhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444433332 223333444444444444444443333
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.7e-10 Score=107.96 Aligned_cols=391 Identities=15% Similarity=0.165 Sum_probs=285.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+++.+|..+|+.++... ..+..+|-.-++.-.+++.+..|..++++....-...| ..|-..+..=-..|+...|.++
T Consensus 87 ~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 45778889999888643 33556788888999999999999999999887632222 4565666666678999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA-GI- 283 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~- 283 (534)
|++-.+ ..|+...|.+.|+.=.+.+..+.|..++++..- +.|++.+|--.++.-.+.|++..|..+|+...+. |-
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 998776 579999999999999999999999999998764 3489999999999999999999999999887653 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------------------------HcCCC
Q 009470 284 QPNVYTYSIVIDALCRCGQITRAHDVFAEML--------------------------------------------EVGCE 319 (534)
Q Consensus 284 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--------------------------------------------~~~~~ 319 (534)
.-+...+.+....=.++..++.|.-+|.-.+ ..+ +
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 0112222222222222333333333333222 121 3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHH-----HH---HHcCChHHHHHHHHHHHHCCCC
Q 009470 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT--ITYNFLID-----CH---CKDGKLEDAIKVLNSMVRKGCN 389 (534)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~-----~~---~~~g~~~~A~~~~~~m~~~~~~ 389 (534)
-|-.+|-..++.-...|+.+...++|++....- +|-. ..|.-.|. ++ ....+++.+.++++...+. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 355666667777777888888888888887652 3311 11222221 11 3467888888888888874 33
Q ss_pred CCHHHHHHHH----HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009470 390 PNASTFNMIF----RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTY 465 (534)
Q Consensus 390 ~~~~~~~~l~----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~ 465 (534)
-...||..+- ....++.++..|.+++...+ |..|-..++...|..=.+.+++|.+..+++...+-+ +-+..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence 3445554443 33456788999999998876 457889999999999999999999999999999975 6677888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 466 RILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
......=...|+.+.|..+|.-++....+......|...|+.=...|.+++|..+++++++..
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 888888888999999999999999866454555678888888889999999999999998753
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=2.6e-10 Score=110.82 Aligned_cols=362 Identities=11% Similarity=0.104 Sum_probs=211.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
+|..-.+.|.+.+-++-|+.+|....+-. +.+...|...+..=-..|..+....+|++.... ++-....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 44444555555555555555555544432 334455555555555556666666666665543 2333344444445555
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
..|+...|..++...-+..+.+..+|-.-+.....+..+++|..+|.+.... .|+...|..-+..---.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 5566666666666655555555666666666666666666666666665543 34444554444444455666666666
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009470 310 FAEMLEVGCEPN-SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC 388 (534)
Q Consensus 310 ~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 388 (534)
+++.++. .|+ ...|-.+...+-+.++++.|.+.|..-.+. ++.....|-.|...--+.|.+-.|..++++..-++.
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 6665554 233 334444555566666666666665544432 233344455555555556666666666666665543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 389 NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRIL 468 (534)
Q Consensus 389 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~l 468 (534)
. +...|...++.-.+.|..+.|..++.+..+. ++-+...|..-|...-+.++-......+ .+ ..-|......+
T Consensus 751 k-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---kk--ce~dphVllai 823 (913)
T KOG0495|consen 751 K-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KK--CEHDPHVLLAI 823 (913)
T ss_pred C-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---Hh--ccCCchhHHHH
Confidence 3 5556666666666666666666666655542 3334455555555554444433333222 22 24466666777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
...+....++++|.+.|.+.++.+ +.+..+|.-+...+.+.|.-++-.+++.+....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 777888889999999999999865 345677888888889999888888888877653
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=9.1e-12 Score=111.02 Aligned_cols=290 Identities=14% Similarity=0.192 Sum_probs=229.0
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN------VYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~ 304 (534)
.++.++|.+.|-+|.+..+.+..+--+|.+.|-+.|..|.|+++.+.+.++ || ......|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 568899999999998876777778888999999999999999999999875 34 233456677888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHcCChHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT----ITYNFLIDCHCKDGKLEDAIKVL 380 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 380 (534)
.|+.+|..+.+.| .--.....-++..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999865 334567788999999999999999999999887644332 34566666677788999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP 460 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 460 (534)
.+..+.+.+ .+..-..+.+.....|++++|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+. .+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NT 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cC
Confidence 999987543 455566678889999999999999999998865555677889999999999999999999999886 33
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCC
Q 009470 461 NVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR---AGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 461 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~ 530 (534)
+...-..+...-....-.+.|..++.+-+.+ +|+...+..+++.-.. .|...+-..+++.|+..-++
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 4444445555444455567787877777774 6999999999986533 35677777778888765443
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1.5e-11 Score=114.13 Aligned_cols=377 Identities=11% Similarity=0.121 Sum_probs=255.1
Q ss_pred ChHHHHHHHHHHHhCC-CCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 127 PLLQVLSFFNWVTARP-EFVHS--PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~-~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
.+..|+.|+..++.+- .+..+ ....+.+...+.+.|++++|+.-|+.+.+.. |+..+-..|+-++.--|+.++..
T Consensus 252 ~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmk 329 (840)
T KOG2003|consen 252 EFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMK 329 (840)
T ss_pred hHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHH
Confidence 4678899998887542 11111 1245666667789999999999999988764 45444444445555678999999
Q ss_pred HHHHHHHHcCCCC------------CHHHHHHHHH-----HHHhcC--CHHHHHHHHHHhhc-cCCCCHHH---------
Q 009470 204 HAFNRMEEYGCAP------------DKIAFSIVIS-----ILCRKR--RASEAQSFFDSLKD-KFEPDVIV--------- 254 (534)
Q Consensus 204 ~~~~~m~~~g~~~------------~~~~~~~ll~-----~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~--------- 254 (534)
+.|.+|......+ +....+..+. ..-+.+ +.++++-.--++.. -+.|+-..
T Consensus 330 eaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l 409 (840)
T KOG2003|consen 330 EAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL 409 (840)
T ss_pred HHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH
Confidence 9999997643322 3333333322 111111 12222221112111 11222110
Q ss_pred ----H--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----------------------------
Q 009470 255 ----Y--------TNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVI---------------------------- 294 (534)
Q Consensus 255 ----~--------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll---------------------------- 294 (534)
+ -.-...|.+.|+++.|.++++-+.+..-+.-...-+.|.
T Consensus 410 k~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn 489 (840)
T KOG2003|consen 410 KASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN 489 (840)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC
Confidence 0 112345788999999999888776542221111111110
Q ss_pred --------HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 295 --------DALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 295 --------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
......|++++|.+.|++.......-....|| +.-.+-..|+.++|++.|-++... +..+..+...+.+.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qiani 567 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANI 567 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence 00112578999999999998664221222232 333567899999999999887643 23567778888899
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
|-...+..+|.+++.+.... ++.|+.+...+...|-+.|+-..|.+.+-+--+ -++-+..+...|...|....-++++
T Consensus 568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999887765 456889999999999999999999987765443 2456888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMY-CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQ 513 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 513 (534)
+..|++..- +.|+..-|..+|..| .+.|++.+|.+++++.-.+ ++.|.....-|++.+...|-
T Consensus 646 i~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 646 INYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc
Confidence 999998765 589999999998855 5689999999999999886 57788888888888876663
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.5e-11 Score=110.53 Aligned_cols=330 Identities=13% Similarity=0.103 Sum_probs=235.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHH--HHH
Q 009470 180 EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIV--YTN 257 (534)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~ 257 (534)
..|...+-.....+.+.|....|++.|...... -+..|...+...--.-+.+ ....+..+.+.|... --.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e----~~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIE----ILSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHH----HHHHHHhcCcccchHHHHHH
Confidence 334444444445556667777777777666542 1122333222221122222 222222222222111 123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHc
Q 009470 258 LVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCE--PNSITFNNLMRVHVKA 335 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~ 335 (534)
+..++-...+.+++.+-.+.....|+.-+...-+....+.....++++|+.+|+++.+...- -|..+|..++-+ +.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hh
Confidence 44566666788888888888888887766666666667777889999999999999987411 256777766633 32
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
.+..-+. +-......+ +-.+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-|
T Consensus 311 ~~skLs~-LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLSY-LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHHH-HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2222111 111111111 445678888889999999999999999999998643 5678899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 009470 416 GKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLK 495 (534)
Q Consensus 416 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 495 (534)
++..+.. +-|...|-.|.++|.-.+...=|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|+.++.-+ .
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--d 463 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--D 463 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--c
Confidence 9999876 4589999999999999999999999999998864 6788999999999999999999999999999876 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 496 PGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 496 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
.+...+..|.+.+.+.++.++|...+++-++
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4667899999999999999999999988776
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1e-12 Score=128.00 Aligned_cols=283 Identities=13% Similarity=0.093 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 198 LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKF---EPDVIVYTNLVRGWCRAGNISEAERV 274 (534)
Q Consensus 198 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (534)
+..+|+..|+++.+. +.-...+...+..+|...+++++|+++|+.+.... ..+..+|.+.+-.+-+.=... -+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HH
Confidence 455666666664443 22233555666667777777777777777665431 234555655544332221111 11
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009470 275 FREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE 354 (534)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 354 (534)
-+++.+.. +-...+|.++.++|.-+++.+.|++.|++.++.+ +....+|+.+..-+....++|.|...|+...... +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 12222211 2245667777777777777777777777766653 2256666666666666666777777776665321 1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009470 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM 434 (534)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (534)
-+...|.-+.-.|.+.++++.|+-.|+.+.+.+.. +.+....+...+-+.|+.|+|+++++++...... |+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 12223333455566777777777777766665432 4555556666666667777777777766655433 333333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|--|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4455566777777777776664 233445566666666677777777666666665
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=9.9e-13 Score=128.07 Aligned_cols=287 Identities=14% Similarity=0.132 Sum_probs=225.6
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG--IQPNVYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
+..+|...|+++.+...-+..+...+.++|...+++++|+++|+.+.+.. ..-+...|.+.+..+-+.- +---+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHHH
Confidence 56789999999877777777888899999999999999999999998753 1225677887775443321 111223
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009470 311 AEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390 (534)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 390 (534)
+++.... +-.+.+|.++.++|.-.++.+.|++.|++..+.+ +-...+|+.+..-+....++|.|...|+.......+
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 3344433 4568899999999999999999999999999864 337889999999999999999999999998875322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+-..|..+...|.+.++++.|+-.|+++.+.+. -+.+....+...+-+.|+.|+|+.+++++.... +-|...--..+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHH
Confidence 334455567789999999999999999998763 367777888888999999999999999998765 334444445566
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 471 MYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.+...+++++|++.++++.+. .+.+..+|..+...|.+.|+.+.|..-|.-+.+..-
T Consensus 566 il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 778889999999999999884 333456677888999999999999988888776543
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=3.8e-11 Score=110.41 Aligned_cols=293 Identities=12% Similarity=0.123 Sum_probs=159.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 196 AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERV 274 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (534)
.|+|.+|.++..+-.+.+- -....|.....+.-..|+.+.+-.++.++.+. ..++...+-+..+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4666666666666555442 22333444445555556666666666555443 233444555555555556666666655
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009470 275 FREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE 354 (534)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 354 (534)
++++.+.+.. +.........+|.+.|++.+...++..|.+.|.--+...-.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 5555554332 33444555555666666666666666655555333221100
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009470 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM 434 (534)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (534)
....+|..+++-....+..+.-...+++...+ .+-++..-..++.-+.++|+.++|.++.++..+.+..|. .. ..
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~ 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RL 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HH
Confidence 00112333333333333333333333333322 223455555666666677777777777776666554433 11 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQL 514 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 514 (534)
-.+.+-++.+.-++..++-.+. .+-+...+.+|...|.+.+.|.+|.+.|+..++ ..|+..+|..+.+++.+.|+.
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCCh
Confidence 2334556665555555554443 233446677777777777777777777777766 457777777777777777777
Q ss_pred HHHHHHHHHHHHc
Q 009470 515 QKHEELVEKMVDR 527 (534)
Q Consensus 515 ~~a~~~~~~~~~~ 527 (534)
++|.++.++....
T Consensus 378 ~~A~~~r~e~L~~ 390 (400)
T COG3071 378 EEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776643
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.3e-10 Score=109.32 Aligned_cols=388 Identities=13% Similarity=0.119 Sum_probs=251.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHS-PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
.+.+++|+.+++|+++. .|+ +..|......|...|+|+...+.--+..+.+ +--+..+..-..++-..|++.+|+
T Consensus 128 ~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred cccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHHHH
Confidence 45789999999999964 345 7788999999999999999988887777765 223566777777888888888887
Q ss_pred HHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH---------------------
Q 009470 204 HAFNRME-EYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG--------------------- 261 (534)
Q Consensus 204 ~~~~~m~-~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~--------------------- 261 (534)
.-..-.- -.|+ .+..+--.+=+.+-+.+ ..++.+-+..=....-|......+....
T Consensus 204 ~D~tv~ci~~~F-~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 204 FDVTVLCILEGF-QNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred HhhhHHHHhhhc-ccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH
Confidence 5433221 1111 11111111111111111 1112211110000011222221111111
Q ss_pred --HH--hcC---CHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 009470 262 --WC--RAG---NISEAERVFREMKMA---GIQPN---------VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS 322 (534)
Q Consensus 262 --~~--~~g---~~~~A~~~~~~m~~~---g~~p~---------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (534)
+- ..+ .+..|...+.+-... ....+ ..+.......+.-.|+...|..-|+..+..... +.
T Consensus 282 ~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~ 360 (606)
T KOG0547|consen 282 EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FN 360 (606)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cc
Confidence 11 011 233333333222111 00111 112222223344568888999999999887533 33
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 323 ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCI 402 (534)
Q Consensus 323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 402 (534)
..|..+...|....+.++..+.|.+..+.+ +.|..+|..-.+.+.-.+++++|..-|++.+..... +...|..+..+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCAL 438 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHH
Confidence 337777888999999999999999998876 667888888888888899999999999999887533 566777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHH--HHHHHHHHhC
Q 009470 403 SKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-----VEPNVNTY--RILITMYCGM 475 (534)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-----~~p~~~~~--~~li~~~~~~ 475 (534)
.+.++++++...|++.++. ++--+..|+...+.+...++++.|.+.|+..++.. +..+...+ -.++ .+.-.
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk 516 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchh
Confidence 8889999999999999875 34467889999999999999999999999887742 11122221 1111 22245
Q ss_pred CCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 476 GHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 476 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
+++..|.++++++++. .|. ...|..|.....+.|+.++|.++|++...
T Consensus 517 ~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 EDINQAENLLRKAIEL---DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHHcc---CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999999984 453 45688899999999999999999998654
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-10 Score=107.71 Aligned_cols=288 Identities=14% Similarity=0.131 Sum_probs=175.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHhcCCHH
Q 009470 193 YVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE---PDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 269 (534)
+-...+.+++++-.+.....|++-....-+....+.-...++++|+.+|+++....| .|..+|..++..--...++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 334445556666666666666544444444444445556677777777777665422 24455555443322211111
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 270 -EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 270 -~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
-|..++. . . +--..|+.++.+.|.-.++.++|...|++..+.+ +-....|+.|..-|....+...|.+-|+..
T Consensus 317 ~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 317 YLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1111111 1 1 1123455566667777777778888887777765 335566777777777777777888877777
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 009470 349 KRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428 (534)
Q Consensus 349 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (534)
++.. +.|...|-.|.++|.-.+...=|+-.|++..+... -|...|.+|..+|.+.++.++|++.|.+....|- .+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchH
Confidence 7664 56777777777888777777777777777776642 3677777778888888888888888877776652 3556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 429 TYNILMQMFATSKSTDMVLKLKKEMEE----NEVEPN--VNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 429 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
.+..|.+.|-+.++.++|...+++..+ .|...+ ...-.-|..-+.+.+++++|..+.....
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 777777777777777777777766544 222212 1111223444556666766655544443
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.2e-10 Score=107.08 Aligned_cols=295 Identities=10% Similarity=0.052 Sum_probs=188.9
Q ss_pred HHHHHHHHH--ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 151 YHEMINLAG--KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 151 ~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
-..+.+++. -.|+|.+|.++..+-.+.+ +.....|..-+++.-+.|+.+.+-.++.+..+..-.++...+-+.....
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 334445554 3499999999999977776 3445677777888889999999999999998863356677788888899
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcC
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV-------YTYSIVIDALCRCG 301 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g 301 (534)
...|+...|..-.+++.+..+..........++|.+.|++.+...++.+|.+.|.--+. .+|..+++-....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888889999999999999999999999999999998865443 23444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
..+.-...++..... .+.++..-..++.-+.+.|+.++|.++.++..+.+..+. -...-.+.+-++.+.-.+..+
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHH
Confidence 444444444444332 122344444555555666666666666666555544333 111112333444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 382 SMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
+..+.. +-++..+.++...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.++.++..
T Consensus 319 ~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 319 KWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 433331 113344555555555555555555555544433 3555555555555555555555555555443
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=2e-10 Score=118.54 Aligned_cols=251 Identities=14% Similarity=0.157 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALC---------RCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
++++|...|++..+.... +...|..+..++. ..+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 356777777777664221 2344444444333 2234677888888777765 3356677777777777888
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009470 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (534)
+++|...|++..+.+ +.+...+..+..++...|++++|...++++.+.+.. +...+..++..+...|++++|.+.+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888877764 445666777777788888888888888888776433 222333344445567778888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009470 418 MKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP 496 (534)
Q Consensus 418 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 496 (534)
+.+...+-+...+..+...+...|+.++|...++++... .|+ ....+.+...|+..| ++|...++.+.+.....+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765432224445666677777788888888888776554 333 334445555666666 466666666655432233
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 497 GSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
....+..+ .+.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 33333333 33344555555555 6666654
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=3.4e-10 Score=116.84 Aligned_cols=268 Identities=8% Similarity=0.026 Sum_probs=185.1
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHhhc
Q 009470 181 ITVDTFSILVRRYVR-----AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC---------RKRRASEAQSFFDSLKD 246 (534)
Q Consensus 181 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~ 246 (534)
.+...|...+++... .+..++|++.|++..+.. +-+...|..+..++. ..++.++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 455666666665322 234678999999888753 223455655554443 23457899999999888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 247 KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
..+.+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|+..+++..+.... +...+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 77888999999999999999999999999999886422 4667888888899999999999999999887522 333334
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG 406 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 406 (534)
.++..+...|++++|...++++.+..-+.+...+..+..++...|++++|...+.++.... ..+....+.+...++..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence 4455567789999999999988765423345567778888889999999999998876652 123444555666667777
Q ss_pred ChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 407 DVNGAHRMYGKMKDLK-CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47777777665421 12222222 33344556777666655 7777654
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.9e-10 Score=105.18 Aligned_cols=197 Identities=11% Similarity=0.071 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 444445555555555555555555554432 2233444445555555555555555555544444444455555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009470 264 RAGNISEAERVFREMKMAGI-QPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVL 342 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (534)
..|++++|.+.+++...... ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555544211 1122334444445555555555555555554442 123334444455555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
..+++..+.. +.+...+..++..+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555544431 223334444444444555555555544444
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=1.3e-08 Score=99.26 Aligned_cols=390 Identities=12% Similarity=0.127 Sum_probs=263.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVH 204 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 204 (534)
.+++...+.+.+.+.+ .++...++.....-.+...|+-++|.+....-...+ .-+...|..+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 3456677888888876 344556666666666778899999988887766654 3466789999988988999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 009470 205 AFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG-I 283 (534)
Q Consensus 205 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 283 (534)
.|......+ +.|...+.-+.-.-++.|+++........+.+..+.....|..++.++.-.|+...|..++++..+.. -
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999988765 45667777777666778888887777777766666677889999999999999999999999887754 2
Q ss_pred CCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009470 284 QPNVYTYSIVI------DALCRCGQITRAHDVFAEMLEVGCEPNSI-TFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD 356 (534)
Q Consensus 284 ~p~~~~~~~ll------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 356 (534)
.|+...|.... ....+.|..++|++.+..-... ..|.. .-.+-...+.+.++.++|..++..+... .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 45555554332 3345677888888777665433 22322 2334556778888999999999988877 366
Q ss_pred hhhHHHH-HHHHHHcCChHHHH-HHHHHHH----------------------------------HCCCCCCHHHHHHHHH
Q 009470 357 TITYNFL-IDCHCKDGKLEDAI-KVLNSMV----------------------------------RKGCNPNASTFNMIFR 400 (534)
Q Consensus 357 ~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~----------------------------------~~~~~~~~~~~~~l~~ 400 (534)
..-|... ..++.+-.+.-++. .+|.... ++|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 5555444 34443333333333 4443333 233221 1222222
Q ss_pred HHHhcCChhHHHHHHHHHH----hCC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 009470 401 CISKLGDVNGAHRMYGKMK----DLK----------CEPNTVTY--NILMQMFATSKSTDMVLKLKKEMEENEVEPNV-N 463 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~~~--~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~ 463 (534)
.|-.-...+-..++.-.+. ..| -+|....| -.+++.|-+.|+++.|...++...++ .|+. .
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 2211111111111111111 111 13444444 45778889999999999999999986 5554 4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.|.+-.+.+...|++++|..++++..+.. .+|..+-..-+.-..++.+.++|.++..+..+.|.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 56666788999999999999999998865 46665555677778899999999999999888875
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=4.3e-10 Score=102.88 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVH 332 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (534)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444444555555555554444332 1123344444444445555555555555444433 22333444444455
Q ss_pred HHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009470 333 VKASRTEKVLQVYNQMKRLGC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGA 411 (534)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 411 (534)
...|++++|.+.+++..+... ......+..+..++...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443211 11233444455555556666666666665555432 1344555555666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 412 HRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
.+.+++..+.. ..+...+..++..+...|+.++|..+++.+..
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666655542 23444455555555566666666666555543
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.3e-08 Score=94.00 Aligned_cols=369 Identities=11% Similarity=0.141 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK-IAFSIVIS 226 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~ 226 (534)
...|-.-..--...+++..|..+|++....+ .-+...|..-+..=.++.....|..++++.... -|.+ ..|--.+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 3344444445556788999999999998876 346678888899999999999999999998874 3433 34444555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
.=-..|++..|.++|++-.+ ..|+...|.+.|..-.+-+.++.|..+|++..- +.|++.+|-.....=.+.|++.-|
T Consensus 150 mEE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 55568999999999998665 578999999999999999999999999999976 469999999888888899999999
Q ss_pred HHHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------------------------C--------
Q 009470 307 HDVFAEMLEV-GC-EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL------------------------G-------- 352 (534)
Q Consensus 307 ~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------------------g-------- 352 (534)
..+|+..++. |- ..+...+.+....-.++..++.|.-+|+-..+. |
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999887654 20 112334444444444455556555555544432 0
Q ss_pred -----------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-H------HHHH---HHHHHHhcCChhHH
Q 009470 353 -----------CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA-S------TFNM---IFRCISKLGDVNGA 411 (534)
Q Consensus 353 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~------~~~~---l~~~~~~~g~~~~A 411 (534)
-+.|..+|--.+..-...|+.+...++|++++..- +|-. . +|.- .+-.-....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 12344555555666666677777777777777652 3311 1 1111 11111345677777
Q ss_pred HHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 412 HRMYGKMKDLKCEPNTVTY----NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
.++|+...+. ++-...|+ -...+--.++.++..|.+++...+. ..|...+|...|..=.+.+++|...+++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777662 22233333 3333344566778888888777664 478888888888888888889999999998
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 488 MIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 488 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
.++-+ +-+-.+|......=...|+.+.|..+|+-+++..
T Consensus 463 fle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 463 FLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 88843 3355667777777777889999998888877653
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=2e-09 Score=107.50 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFA 438 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (534)
++..+...|-..|++++|++++++.+++.. ..+..|..-.+.+-+.|++++|.+.++.....+.. |...=+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 445556667777777777777777777632 13566777777777777777777777777766533 6666666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPNVN------TY--RILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
++|++++|.+++......+..|-.. .| .-...+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777776654322221 11 2234567777777777776665544
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.4e-08 Score=90.06 Aligned_cols=368 Identities=10% Similarity=0.071 Sum_probs=248.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-C-HHH-------------HHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-L-AAE-------------AVHAFNRMEE 211 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~-~~~-------------A~~~~~~m~~ 211 (534)
+.+.-...+..|...++-+.|...+......-.. .-.+.++..+.+.| + .+. |++.+.-..+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~---p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS---PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccc---hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 4556677888888899999998888766544222 22333333333322 1 111 1122222222
Q ss_pred cC---------------CCCCHHHHHHHHHHHHh--cCCHHHHHH--HHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 212 YG---------------CAPDKIAFSIVISILCR--KRRASEAQS--FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAE 272 (534)
Q Consensus 212 ~g---------------~~~~~~~~~~ll~~~~~--~g~~~~A~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (534)
.+ ++|...+....+.++.. .++...|.. ++-+....++.|+.....+...+...|+.++|+
T Consensus 173 l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~ 252 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAE 252 (564)
T ss_pred HhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHH
Confidence 22 22333333334444433 344444433 344445678889999999999999999999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 273 RVFREMKMAGIQPNV-YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 273 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
..|++..-. .|+. .......-.+.+.|+++....+...+.... +-....|-.-........+++.|+.+-++.++.
T Consensus 253 ~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 253 DIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 999988754 2322 222222333567888988888888877543 223344444455566778889999988888766
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 009470 352 GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYN 431 (534)
Q Consensus 352 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 431 (534)
. +.+...|-.-...+...|++++|.-.|+...... +-+...|..++..|...|+..+|.-+-....+. ...+..+..
T Consensus 330 ~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 330 E-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred C-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 4 4455566666678889999999999999988764 247789999999999999999988777665542 133556665
Q ss_pred HHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 432 ILM-QMFA-TSKSTDMVLKLKKEMEENEVEPNV-NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 432 ~li-~~~~-~~g~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
.+. ..+. ...--++|.++++..... .|+. ...+.+...|...|++++++.++++.+.. .||....+.|.+.+
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIM 481 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHH
Confidence 552 2222 233457788888877664 5554 45667777888999999999999999884 58999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 009470 509 RRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 509 ~~~g~~~~a~~~~~~~~~~g 528 (534)
...+.+++|.+.|..+++.+
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999887754
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.2e-09 Score=103.00 Aligned_cols=355 Identities=15% Similarity=0.086 Sum_probs=228.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT-VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-KIAFSIVISI 227 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~ 227 (534)
.+....+-+.++|++++|++.|....+.. |+ ...|.....+|...|+|+++++.-.+..+. .|+ .-.+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 45555666778888888888888877763 34 567778888888888888888877777664 455 3455566666
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHCC--CCCCHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFRE---------MKMAG--IQPNVYTYSIVIDA 296 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~g--~~p~~~~~~~ll~~ 296 (534)
+-..|++++|+.-... ..+..++....-.-.+.+++.+ |.+.+ +.|.....++....
T Consensus 193 ~E~lg~~~eal~D~tv------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTV------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred HHhhccHHHHHHhhhH------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 6677777776533222 1222222222212222222221 11111 22333332222221
Q ss_pred HH-----------------------H--cC---CHHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHHHHcC
Q 009470 297 LC-----------------------R--CG---QITRAHDVFAEMLEV---GCEP---N------SITFNNLMRVHVKAS 336 (534)
Q Consensus 297 ~~-----------------------~--~g---~~~~A~~~~~~m~~~---~~~~---~------~~~~~~li~~~~~~g 336 (534)
+- . .+ .+.+|...+.+-... .... | ..+...-...+.-.|
T Consensus 261 F~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 261 FHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred ccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 11 0 01 223333332221110 0001 1 111111122344578
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG 416 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 416 (534)
+.-.|.+-|+..++... .+...|--+..+|....+.++.++.|++..+.+.. +..+|..-.+.+.-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988753 23333777778899999999999999999998754 77788888888888899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009470 417 KMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP 496 (534)
Q Consensus 417 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 496 (534)
+.+.... -+...|..+.-+..+.+++++++..|++.+++ ++--...|+.....+...++++.|.+.|+.+++. .|
T Consensus 419 Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~ 493 (606)
T KOG0547|consen 419 KAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EP 493 (606)
T ss_pred HHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---cc
Confidence 9998652 25566666666777889999999999999987 5667789999999999999999999999999984 44
Q ss_pred C-------H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 497 G-------S--SVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 497 ~-------~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+ . .+...++ .+.-.+++..|.+++.++++.+
T Consensus 494 ~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD 533 (606)
T ss_pred ccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC
Confidence 4 1 1112222 2223489999999999988754
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.7e-09 Score=100.80 Aligned_cols=288 Identities=11% Similarity=0.034 Sum_probs=217.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 214 CAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIV 293 (534)
Q Consensus 214 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 293 (534)
..-+......-.+-+...+++.+..++++.+.+..++....+..-|.++...|+..+-..+=.+|.+.- +-...+|-.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 344555566666677788899999999999888888888888888888899998888888888887763 3357788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCh
Q 009470 294 IDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKL 373 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 373 (534)
.-.|.-.|+..+|.+.|.+....+ +.-...|-.+...|.-.|..|+|+..|...-+.- +-...-+--+.--|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 888888899999999998877654 2235578888888888999999998888776541 11111222333447778899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC--CCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 374 EDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL----KC--EPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 374 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~--~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
+-|.+.|.+..... +-|+..++-+.-.....+.+.+|..+|+...+. +. .--..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999888764 347777888877777788899999988877521 10 113456788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLR 509 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 509 (534)
..++...... +-+..++..+.-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCccHHHHHHHHHHH
Confidence 9999888763 66888888888888899999999999998887 5687766666665443
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=1.4e-10 Score=116.35 Aligned_cols=273 Identities=17% Similarity=0.204 Sum_probs=142.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 170 FIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 170 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
++-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|+-...+.+...|+.++......++.+.+. .
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------C
Confidence 3455666677777777777777777777777776 7777665555666677777777766666666654 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHH
Q 009470 250 PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE-VGCEPNSITFNNL 328 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l 328 (534)
|...+|..|..+|...||+.. ++..++ ..-.+...+...|.-..-..++..+.- .+.-||..+ .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 566777777777777777654 121221 011122223333333333333322211 112223222 2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD-GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGD 407 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 407 (534)
+....-.|-++.+++++..+-........ ..+++-+... ..+++-..+.+...+ .++..+|..++.+-...|+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~---~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPF---QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchH---HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 23333444455555544433221100000 0012211111 112222222222222 3566666666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 408 VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
.+.|..++.+|++.|++.+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666666666666666666655555544 55666666666666666666666666666666555444
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=1.1e-08 Score=102.34 Aligned_cols=298 Identities=11% Similarity=0.126 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI-VISI 227 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~ 227 (534)
++.-....++...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+...|.. +..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 34444556678889999999999775444 34446677888899999999999999999999876 56655544 4444
Q ss_pred HHh-----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 228 LCR-----KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI-SEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 228 ~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
..- ..+.+...++++++...+|... ....+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~-~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSD-APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPE 157 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCcccc-chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChh
Confidence 422 2356778888998877664322 222222222222223 3455666677777765 24555666666566
Q ss_pred CHHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 302 QITRAHDVFAEMLEV----G----------CEPNSI--TFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
+.+-..+++...... + -.|... ++..+...|...|++++|++.+++.++.. +..+..|..-..
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 666666666665432 1 123333 44556778889999999999999998873 334778888899
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV------TY--NILMQMF 437 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~ 437 (534)
.+-+.|++++|.+.++.....+.. |...-+..+..+.+.|++++|.+++......+..|-.. .| .....+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654 77777888889999999999999999887665433221 12 3345678
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009470 438 ATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~m~~ 455 (534)
.+.|++..|++-+..+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 889999888877665543
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=2.1e-10 Score=102.47 Aligned_cols=227 Identities=15% Similarity=0.156 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHc
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITF-NNLMRVHVKA 335 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~ 335 (534)
.+.++|.+.|.+.+|.+.++.-.+. .|-+.||-.|-..|.+..+.+.|+.++.+-.+. .|..+|| ..+.+.+-..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 4445555555555555555444433 233344444455555555555555555444433 2222222 2344444445
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+++++...|+. +...|+.+.-+|...+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555544432 333444444444444455555555555555555443 4444555554555555555555544
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 416 GKMKDLKCEPN--TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 416 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
++....--.|+ ...|..+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..++..+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 44433221122 1234344444444455555555554444432 22344444444444445555555555444433
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.3e-10 Score=102.21 Aligned_cols=229 Identities=14% Similarity=0.146 Sum_probs=150.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (534)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..+.+.|+.++.+..+.+|-|+....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 56677777888888888877776653 4666777777778888888888888877777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
+.++|.++|++..+.. ..++.....+...|.-.++.+-|+.+++++.+.|+. +...|+.+.-+|.-.+++|-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777777776642 224555555666666777777777777777777744 66667777667777777777777776
Q ss_pred HHHHcCCCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 347 QMKRLGCEAD--TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 347 ~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
+....--.|+ ..+|..+.......|++..|.+.|+-....+.. +...++.+.-.-.+.|++++|..++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6654432222 234555555555556666666666655554322 445555555555556666666666555543
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=2e-10 Score=115.25 Aligned_cols=279 Identities=16% Similarity=0.166 Sum_probs=200.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
.++..+...|+.|+..||..+|.-||..|+.+.|- +|.-|+- ..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667888999999999999999999999999998 8888875 36677889999999999999887776
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCCChhhHH
Q 009470 283 IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMK-RLGCEADTITYN 361 (534)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~ 361 (534)
.|-..+|..|..+|...|++.- |+...+ -...+...+...|.-.....++..+. ..+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 5788999999999999999876 333222 12233445556665555555555433 223334433
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (534)
..+......|-++.+.+++..+...... .. +..+++-+... ..-.+++....+...-.|+..+|..++..-...|
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 3444455667778888877666433111 11 11123333222 2233344443333222589999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHE 518 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 518 (534)
+.+.|..++.+|.+.|++.+..-|..++-+ .|+..-+..+++-|.+.| +.|+.+|+...+-.+...|....+.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~ 291 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGE 291 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhcc
Confidence 999999999999999999999988888866 788888888888888877 8999999998888777766544443
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=2.7e-09 Score=105.30 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=102.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCC-CCH-H
Q 009470 328 LMRVHVKASRTEKVLQVYNQMKRL-----G--CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK-----GCN-PNA-S 393 (534)
Q Consensus 328 li~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~~-~ 393 (534)
+...|...+++++|..+|+++... | .+--..+++.|..+|++.|++++|...+++..+- |.. +.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344455555555555555554321 1 0111233444445555555555555555544321 111 111 2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CC
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKD-----LKCE--PNTVTYNILMQMFATSKSTDMVLKLKKEMEEN-----E--VE 459 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~--~~ 459 (534)
.++.+...++..+++++|..++++..+ .|.. --..+++.|...|...|++++|.+++++.... | ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 234455556666666666666665432 1111 11345666777777777777777777665432 1 11
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 460 PNVNTYRILITMYCGMGHWNNAYKYIREMIE----EKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 460 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
-....++.+...|.+.+++.+|.++|.+... -|.-.|+ ..+|..|...|.+.|++++|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234556666667777777766666665432 1111222 2456667777777777777777766654
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.1e-08 Score=92.75 Aligned_cols=296 Identities=13% Similarity=0.087 Sum_probs=224.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEY-GCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
+.+..++...|...+-.+... -++-|......+...+...|+.++|+..|++...-.+.+..........+.+.|+++.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 344456666666666555432 3466778889999999999999999999999876555555566666677788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
...+...+.... +-....|-.-+......++++.|+.+-++.++.. +.+...|..-.+.+...++.++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 988888886532 1233444444555667889999999999988775 34566666666788899999999999998887
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCChhHHHHHHHHHHhCCCCCC-H
Q 009470 351 LGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIF-RCI-SKLGDVNGAHRMYGKMKDLKCEPN-T 427 (534)
Q Consensus 351 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~m~~~~~~p~-~ 427 (534)
.. +-+...|.-|+.+|...|++.+|..+-+...+. ...+..+...+. ..+ ..-..-++|.+++++.... .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 64 567889999999999999999999888877665 223555555542 222 2233457899999988765 454 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 498 (534)
...+.+...+...|..+.++.+++..... .||....+.|...+...+.+.+|++.|..++.. .|+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---Cccc
Confidence 55677888899999999999999998774 789999999999999999999999999999884 4554
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.2e-11 Score=82.30 Aligned_cols=49 Identities=51% Similarity=1.120 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 250 PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=3.8e-09 Score=104.29 Aligned_cols=242 Identities=18% Similarity=0.242 Sum_probs=173.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 009470 248 FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA-----GI-QPNVY-TYSIVIDALCRCGQITRAHDVFAEMLEV---- 316 (534)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~---- 316 (534)
.|.-..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3334456666888999999999999998887653 21 22332 2344677888899999999999988653
Q ss_pred -CC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 317 -GC-EP-NSITFNNLMRVHVKASRTEKVLQVYNQMKRL-----GC-EADT-ITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 317 -~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
|- .| -..+++.|...|++.|++++|...++...+. |. .+.. ..++.++..++..+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 21 11 2346677777899999999888877765432 21 1222 33566777888999999999998876543
Q ss_pred -----CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 387 -----GCN--PNASTFNMIFRCISKLGDVNGAHRMYGKMKDL----KCE--P-NTVTYNILMQMFATSKSTDMVLKLKKE 452 (534)
Q Consensus 387 -----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~l~~~ 452 (534)
|.. .-..+++.+...|.+.|++++|+++++++... +.. + ....++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 111 12467899999999999999999999987542 111 1 244678888899999999999998877
Q ss_pred HHH----CCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 453 MEE----NEV-EPN-VNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 453 m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
... .|. .|+ ..+|..|...|...|++++|.++.+.+.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 543 221 223 4678999999999999999999988776
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-08 Score=98.18 Aligned_cols=284 Identities=13% Similarity=0.084 Sum_probs=229.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
-+.+....-.+.+...+++.+..++++.+.+.. ++....+..-|..+...|+..+-..+=.++.+..|..+.+|-++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 345666677778888999999999999998764 6677777778889999999998888888899999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCh
Q 009470 261 GWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV--GCEPNSITFNNLMRVHVKASRT 338 (534)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 338 (534)
.|.-.|+..+|.+.|.+....+.. =...|-.....|.-.|..++|+..+...-+. |+. ..+--+.--|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHhccH
Confidence 999999999999999988654211 2456888888999999999999998877654 321 1122334457889999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCChhHHH
Q 009470 339 EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----G--CNPNASTFNMIFRCISKLGDVNGAH 412 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~ 412 (534)
+.|.+.|.+....- +.|+.+++-+.-.....+.+.+|..+|+..... + ...-..+++.+..++.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999988764 678888888888888899999999999987732 1 1123456889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
..+++..... +-+..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999998865 44889999999999999999999999999886 4777766666665443
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.7e-11 Score=81.55 Aligned_cols=50 Identities=36% Similarity=0.663 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009470 285 PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK 334 (534)
Q Consensus 285 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 334 (534)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777766653
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=1.3e-07 Score=92.71 Aligned_cols=302 Identities=12% Similarity=0.078 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGC-APDK-IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
.|..+...+...|+.+.+.+.+.+..+... ..+. .........+...|++++|.+.+++.....|.|...+.. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444444455555555444444332211 1111 111122223445566666666666655544444444432 1122
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 263 CR----AGNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 263 ~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
.. .+..+.+.+.+... .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22 23333333333331 111222 2233344455566666666666666666654 3344555566666666666
Q ss_pred hhHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhH
Q 009470 338 TEKVLQVYNQMKRLGC-EADT--ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC-NPNASTF-N--MIFRCISKLGDVNG 410 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~ 410 (534)
+++|...+++..+..- .++. ..|..+...+...|++++|..+++++..... .+..... + .++..+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 6666666666554321 1121 2344556666677777777777766643321 1111111 1 22222233333333
Q ss_pred HHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHhCCCH
Q 009470 411 AHRM--Y-GKMKDLKC-EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE---P-----NVNTYRILITMYCGMGHW 478 (534)
Q Consensus 411 A~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~---p-----~~~~~~~li~~~~~~g~~ 478 (534)
+.++ . ........ ............++...|+.++|..+++.+...... - .....-....++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3332 1 11111100 011112224555667778888888888777653211 0 111112222345577888
Q ss_pred HHHHHHHHHHHH
Q 009470 479 NNAYKYIREMIE 490 (534)
Q Consensus 479 ~~A~~~~~~~~~ 490 (534)
++|.+.+.+.+.
T Consensus 324 ~~A~~~L~~al~ 335 (355)
T cd05804 324 ATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.3e-07 Score=92.74 Aligned_cols=306 Identities=9% Similarity=0.013 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDV---IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVI 294 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 294 (534)
...|..+...+...|+.+.+.+.+.......+.+. .........+...|++++|.+.+++..+... .+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 44566666777777888887777776654433332 2233345567788999999999999887632 23434442 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 009470 295 DALCR----CGQITRAHDVFAEMLEVGCEPN-SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCK 369 (534)
Q Consensus 295 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 369 (534)
..+.. .|..+.+.+.++. ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 23333 3455555555544 1122333 3444556678899999999999999999875 5567788889999999
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCC
Q 009470 370 DGKLEDAIKVLNSMVRKGCN-PNA--STFNMIFRCISKLGDVNGAHRMYGKMKDLKC-EPNTVTY-N--ILMQMFATSKS 442 (534)
Q Consensus 370 ~g~~~~A~~~~~~m~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~ 442 (534)
.|++++|...+++....... ++. ..|..+...+...|++++|.+++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998876321 232 3456788889999999999999999864332 1112111 1 23333344454
Q ss_pred HHHHHHH--HHHHHHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----CC--CHHHHHHHHHHHHHc
Q 009470 443 TDMVLKL--KKEMEENEVE--PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCL-----KP--GSSVYEMVLQQLRRA 511 (534)
Q Consensus 443 ~~~a~~l--~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~p--~~~~~~~l~~~~~~~ 511 (534)
.+.+.++ +........+ ...........++...|+.++|.++++.+.....- .. .........-++.+.
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 4433333 1111111111 11122235666788999999999999988663311 00 111222233345788
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009470 512 GQLQKHEELVEKMVDRG 528 (534)
Q Consensus 512 g~~~~a~~~~~~~~~~g 528 (534)
|+.++|.+.+...+..+
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=5.3e-07 Score=88.19 Aligned_cols=375 Identities=12% Similarity=0.161 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSR-NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
|..|-.-+..+.+.|+...-+..|+..... .+......|...+.-....|-++-+++++++..+. ++..-+.-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 446666666677777777777777765543 33334456777777777777777777777777653 2333555666
Q ss_pred HHHhcCCHHHHHHHHHHhhcc-------CCCCHHH--------------------------------------HHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDK-------FEPDVIV--------------------------------------YTNLVRG 261 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~--------------------------------------~~~li~~ 261 (534)
.+++.++.++|.+.+..+... .+.+-.. |++|+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 667777777777766654321 2223333 4444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHH----
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSIT-------FNNLMR---- 330 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~li~---- 330 (534)
|.+.|.++.|..+|++.... ..++.-|..+-+.|..-..-.-+..+=-.-.+.|-.-+... +..+++
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 55555555555555444432 12333334444444332211111100000000111111111 111111
Q ss_pred ----HHH----------------HcCChhHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 331 ----VHV----------------KASRTEKVLQVYNQMKRLGCEA------DTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 331 ----~~~----------------~~g~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
.++ ..|+..+....|.+..+. +.| -...|..+...|-..|+.+.|..+|++..
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 011 122233444444444432 111 12346677778888888888888888887
Q ss_pred HCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----------CCC------CHHHHHHHHHHHHhcCCHH
Q 009470 385 RKGCNPN---ASTFNMIFRCISKLGDVNGAHRMYGKMKDLK-----------CEP------NTVTYNILMQMFATSKSTD 444 (534)
Q Consensus 385 ~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----------~~p------~~~~~~~li~~~~~~g~~~ 444 (534)
+...+-- ..+|..-...-.+..+++.|.++.++....- .++ +...|..+++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7644322 2344444555556777888888777664311 011 2234555555555567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR---AGQLQKHEELV 521 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~ 521 (534)
....+++.+.+..+. +..........+-.+.-++++.+++++-+.....+.-..+|+..+.-+.+ .-+++.|+.+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 778888887775433 22222222223444555677777777666654222223455555554433 24567777777
Q ss_pred HHHHHcCCCC
Q 009470 522 EKMVDRGFTA 531 (534)
Q Consensus 522 ~~~~~~g~~~ 531 (534)
+++++ |+.|
T Consensus 574 EqaL~-~Cpp 582 (835)
T KOG2047|consen 574 EQALD-GCPP 582 (835)
T ss_pred HHHHh-cCCH
Confidence 77777 5554
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.6e-06 Score=84.28 Aligned_cols=395 Identities=13% Similarity=0.126 Sum_probs=232.6
Q ss_pred HHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 114 HVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRY 193 (534)
Q Consensus 114 ~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 193 (534)
.++.......+.+.+.+|+...+.+... .+.+...+..-+-++.+.+.|++|+.+.+.-... ..+...+---..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 3444444445667788899888888753 3556777888888888999999998555432211 11111112223444
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC----------------------
Q 009470 194 VRAGLAAEAVHAFNRMEEYGCAP-DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEP---------------------- 250 (534)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------------------- 250 (534)
.+.++.++|+..++ |+.+ +..+...-.+.+.+.|++++|.++|+.+.....+
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 57888999998887 3333 3446667777888899999999999877322111
Q ss_pred ---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHHcCCHHHHH
Q 009470 251 ---------DVIVYTNLVRGWCRAGNISEAERVFREMKMAG-------------IQPNVY-TYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 251 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~-~~~~ll~~~~~~g~~~~A~ 307 (534)
+-..+......+...|++.+|+++++...+.+ +.-+.. .-..+.-.+...|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 11122233455677889999999988873211 010111 1223445566789999999
Q ss_pred HHHHHHHHcCCCCCHHH----HHHHHHHHHHcCChh-------------HHHHHHHHHHH--------------------
Q 009470 308 DVFAEMLEVGCEPNSIT----FNNLMRVHVKASRTE-------------KVLQVYNQMKR-------------------- 350 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~-------------~a~~~~~~~~~-------------------- 350 (534)
.++...++.. .+|... -|.++..-....-++ -+..+...+..
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9998888875 334322 122221100000000 00000000000
Q ss_pred ---------c-CCCCChhhHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--
Q 009470 351 ---------L-GCEADTITYNFLIDCH--CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG-- 416 (534)
Q Consensus 351 ---------~-g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-- 416 (534)
. +..|. ..+.+++..+ ++...+.+|.+++...-+....-...+.-.++......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0 11122 2233333332 2223466777777776665433234566667778889999999999999
Q ss_pred ------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhCCCHHHHHHH
Q 009470 417 ------KMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN--EVEPNVN----TYRILITMYCGMGHWNNAYKY 484 (534)
Q Consensus 417 ------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~ 484 (534)
.+.+.+..|- +...+...+.+.++.+.|..++.+.... .-.+... ++...+..-.+.|+.++|..+
T Consensus 403 ~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 5555554444 4455666777878777777777666431 0111222 333344444567999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 485 IREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 485 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
++++++.. +++..+...++.+|++. +.+.|..+-.++
T Consensus 481 leel~k~n--~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFN--PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999965 67888888899888875 467777665543
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.5e-08 Score=89.68 Aligned_cols=292 Identities=12% Similarity=0.096 Sum_probs=179.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI-VISIL 228 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~ 228 (534)
-+..++..+.+..++++|++++....+++ +-+......+..+|.+..++..|-+.++++-.. .|...-|.. -.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46677777788888888888888777775 336677888888888888888888888888663 455555543 34556
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLV--RGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
.+.+.+..|+++...|.+. ++...-..-+ ......+++..+..++++....| +..+.+...-...+.|++++|
T Consensus 89 Y~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 6778888888888877653 1111111112 22345677777877777765332 334444444445678888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChh----------------------------
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTI---------------------------- 358 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---------------------------- 358 (534)
++-|+...+.+--.....|+..+ +..+.|+.+.|++...+++++|+...+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 88888887765444556676555 4456788888888888888888653111
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRK-GCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF 437 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (534)
.+|.-...+.+.|+++.|.+.+.+|.-+ ....|+.|...+.-.- ..+++.+..+-+.-+.+... -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 0122222234566666666666666433 2234555554433221 12334444444444444432 3445666666667
Q ss_pred HhcCCHHHHHHHHHH
Q 009470 438 ATSKSTDMVLKLKKE 452 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~ 452 (534)
|++.-++.|..++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 776666666666544
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=4.9e-08 Score=83.72 Aligned_cols=197 Identities=16% Similarity=0.092 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
..-|.-.|...|++..|.+-+++..+.. +-+..++..+...|.+.|+.+.|.+.|++.....+.+..+.|...-.+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3334455555555555555555555543 223445555555555555555555555555554455555555555555666
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 009470 266 GNISEAERVFREMKMAGIQ-PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQV 344 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 344 (534)
|++++|...|++....-.- -...+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.+...+.|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666555543111 113345555555555556666665555555543 12233444555555555555555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 345 YNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 345 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
++.....+. ++....-..|..--..|+.+.+.+.=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555542 5555555555555555555555554444443
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=6.3e-08 Score=83.07 Aligned_cols=208 Identities=13% Similarity=0.115 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC 368 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 368 (534)
+...|.-+|...|+...|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456667777888888888888877764 3356677777777888888888888888777664 455667777777778
Q ss_pred HcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 369 KDGKLEDAIKVLNSMVRKG-CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|++..+.... ...+...+.+...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888777652 1223456777777777888888888888887776522 4455666777777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEM 503 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 503 (534)
..++.....+ .++.......|+.--+.|+.+.+-++=.++... -|...-|..
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~---fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL---FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHh
Confidence 8888777765 377777777777777788888777766666654 355444443
No 79
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=4.1e-07 Score=100.87 Aligned_cols=378 Identities=10% Similarity=0.050 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
..+......+...|++..|...+....... .-..............|+++.+.++++.+.......+..........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 345555566667777777665554432211 001112223344556788888777777653211112222333444555
Q ss_pred HhcCCHHHHHHHHHHhhccCC-------CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFE-------PD--VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN----VYTYSIVID 295 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~ 295 (534)
...|++++|...++....... +. ......+...+...|++++|...+++..+.-...+ ....+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 678999999998887643211 11 12223344556789999999999998876311112 134455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCC--C-ChhhHHHH
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGC---EP--NSITFNNLMRVHVKASRTEKVLQVYNQMKRL----GCE--A-DTITYNFL 363 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l 363 (534)
.+...|++++|...+++.....- .+ ...++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 77889999999999988764311 11 1234455667788899999999998876542 211 1 22345556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHH-----HHH
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRK----GCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP-NTVTY-----NIL 433 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~-----~~l 433 (534)
...+...|++++|...+.+.... +.......+..+...+...|+.++|.+.+++........ ....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66778889999999999887653 111123344556677888999999999998875421110 11111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC-CHHHHHHHHH
Q 009470 434 MQMFATSKSTDMVLKLKKEMEENEVEPNV---NTYRILITMYCGMGHWNNAYKYIREMIEEK---CLKP-GSSVYEMVLQ 506 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~ 506 (534)
+..+...|+.+.|.+++............ ..+..+..++...|++++|...++++.+.. +... ...+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24445678999999887775542211111 123456677889999999999999887632 1111 1234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC
Q 009470 507 QLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 507 ~~~~~g~~~~a~~~~~~~~~~g 528 (534)
++.+.|+.++|.+.+.++++..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8899999999999999987753
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=1.9e-06 Score=84.64 Aligned_cols=367 Identities=14% Similarity=0.105 Sum_probs=190.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
+...|+.+.-++...+++++|+..|......+ +.|...|.-+.-.-++.|+++.....-..+.+.. +-....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 44455555555555566666666666555544 3445555555555555555555555554444421 122334444444
Q ss_pred HHHhcCCHHHHHHHHHHhhccC--CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKF--EPDVIVYTNLV------RGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
++.-.|+...|..+.+...+.. .|+...|.... ....+.|..++|.+.+..-... +.-....-.+-...+.
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~ 230 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHH
Confidence 5555555555555555544322 23443333222 2233444455554444433221 1101111122334445
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCh-----------------------------------hHHH
Q 009470 299 RCGQITRAHDVFAEMLEVGCEPNSITFNNLM-RVHVKASRT-----------------------------------EKVL 342 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~~-----------------------------------~~a~ 342 (534)
+.+++++|..++..++.. .||...|...+ .++.+-.+. +...
T Consensus 231 kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHH
Confidence 555555555555555554 23333333222 222211111 2233
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--C------------CCCCHH--HHHHHHHHHHhcC
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK--G------------CNPNAS--TFNMIFRCISKLG 406 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~------------~~~~~~--~~~~l~~~~~~~g 406 (534)
+++..+.+.|+++ ++..+...|-.-...+--.++...+... | -+|... ++..++..+-+.|
T Consensus 309 kyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 309 KYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 3344444444432 2333333332222222111222222111 1 134443 4456778888999
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPN-TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
+++.|...++...+. .|+ ...|..-.+.+...|++++|..++++..+.. .+|...-..-+.-..++++.++|.++.
T Consensus 386 ~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 386 DYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred cHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHH
Confidence 999999999999875 344 3455566688899999999999999999876 566665556667777889999999999
Q ss_pred HHHHHcCC-CCCC----HHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 009470 486 REMIEEKC-LKPG----SSVYEMV--LQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 486 ~~~~~~~~-~~p~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 524 (534)
....+.|. ..-+ .-.|..+ ..+|.++|++-+|.+-+..+
T Consensus 463 skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 463 SKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 88877651 1011 1123222 34677777777776655544
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=4.9e-08 Score=92.37 Aligned_cols=95 Identities=17% Similarity=-0.002 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
|..+...+...|+.++|...|++..+..+.+...|+.+...+...|++++|...|++..+.... +...|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 3334444444455555555554444444444455555555555555555555555555443211 233444444444455
Q ss_pred CCHHHHHHHHHHHHHc
Q 009470 301 GQITRAHDVFAEMLEV 316 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~ 316 (534)
|++++|++.++...+.
T Consensus 146 g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 146 GRYELAQDDLLAFYQD 161 (296)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555554443
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=4.7e-08 Score=92.52 Aligned_cols=218 Identities=14% Similarity=0.051 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRN---VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 238 (534)
+..+.++.-+.++.... .......|..+...|...|++++|+..|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555331 11123456666667777777777777777776643 334566777777777777777777
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC 318 (534)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 318 (534)
+.|++..+..+.+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...+++.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777666555566777777777777777777777777776643 322211122222334566777777776544332
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---C---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009470 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG---C---EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 387 (534)
.++...+ .......|+...+ +.+..+.+.. . +.....|..+...+.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 1222234444433 2333333210 0 1123456666666666677777777766666554
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=4.9e-06 Score=81.64 Aligned_cols=372 Identities=11% Similarity=0.162 Sum_probs=224.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN------VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC--APDK 218 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~ 218 (534)
+|..-+--|..+.+.+++++|-+.+....... .+-+...|..+-+...++-+.-..+.+=.-| +.|+ -+|.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii-R~gi~rftDq 246 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII-RGGIRRFTDQ 246 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH-HhhcccCcHH
Confidence 55566777788888888888888887665431 1334556777766666665544433332222 2222 2343
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHH
Q 009470 219 --IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG----------------------NISEAERV 274 (534)
Q Consensus 219 --~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~ 274 (534)
..|++|.+-|.+.|.+++|..+|++....+ .++.-|+.+-..|..-. +++-.+.-
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 468899999999999999999999876531 12333444444443221 12222333
Q ss_pred HHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCC
Q 009470 275 FREMKMAGI-----------QPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP------NSITFNNLMRVHVKASR 337 (534)
Q Consensus 275 ~~~m~~~g~-----------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~ 337 (534)
|+.+.+.+. .-++..|..-+. +..|+..+-...+.+..+. +.| -...|..+.+.|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 333332210 112222222221 2346667777777777654 122 23467888899999999
Q ss_pred hhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------C------CHHHHHH
Q 009470 338 TEKVLQVYNQMKRLGCEAD---TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-----------P------NASTFNM 397 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~------~~~~~~~ 397 (534)
.+.|..+|++..+...+.- ..+|..-...-.+..+++.|+++++......-. + +...|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999999987643322 455666666667788899999988877543111 1 2234556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh--
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV-NTYRILITMYCG-- 474 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~-- 474 (534)
.++..-..|-++....+|+++.+..+. ++.........+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 666666788899999999999887754 4444333444455666778888888776654334443 456665554443
Q ss_pred -CCCHHHHHHHHHHHHHcCCCCCCHH-H-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 475 -MGHWNNAYKYIREMIEEKCLKPGSS-V-YEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 475 -~g~~~~A~~~~~~~~~~~~~~p~~~-~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
....+.|..+|+++++ +| +|... + |......=.+-|-...|..+++++..
T Consensus 562 gg~klEraRdLFEqaL~-~C-pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GC-PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3467889999999988 43 34322 1 21222222344777777777777543
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=1e-06 Score=88.23 Aligned_cols=378 Identities=12% Similarity=0.082 Sum_probs=253.1
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 009470 144 FVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP-DKIAFS 222 (534)
Q Consensus 144 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~ 222 (534)
+.-++.+|..+.-.+...|+++.+-+.|++....-+ .....|..+...|...|.-..|+.+++.-....-.| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 445788999999999999999999999998765532 345789999999999999999999988765432224 344444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCC-
Q 009470 223 IVISILCR-KRRASEAQSFFDSLKDK-----FEPDVIVYTNLVRGWCRA-----------GNISEAERVFREMKMAGIQ- 284 (534)
Q Consensus 223 ~ll~~~~~-~g~~~~A~~~~~~~~~~-----~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~- 284 (534)
..-..|.+ .+..++++.+-.++... ..-....|-.+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444443 46666666666554431 112334444444444322 2346788888888776433
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC---------
Q 009470 285 PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL-GCE--------- 354 (534)
Q Consensus 285 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~--------- 354 (534)
|++.- .+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 478 p~~if--~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIF--YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHH--HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 33333 334457788889999999998888865678888888888888888998888888765442 210
Q ss_pred ---------CChhhHHHHHHHHHH------c-----------------CChHHHHHHHHHHH--------HCC-------
Q 009470 355 ---------ADTITYNFLIDCHCK------D-----------------GKLEDAIKVLNSMV--------RKG------- 387 (534)
Q Consensus 355 ---------~~~~~~~~li~~~~~------~-----------------g~~~~A~~~~~~m~--------~~~------- 387 (534)
.-..|...++..+-. . ++..+|......+. ..|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222221110 0 01111111111110 001
Q ss_pred --C--CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 388 --C--NPN------ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 388 --~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
. .|+ ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0 011 1234455566777888888888888876643 3456667777777888899999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 458 VEPNVNTYRILITMYCGMGHWNNAYK--YIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 458 ~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+-+......+...+.+.|+..-|.. ++.++++.+ +.+...|..+...+.+.|+.+.|-+.|....+..
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 4456678899999999998887777 999999976 5678899999999999999999999999887753
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=7e-07 Score=81.24 Aligned_cols=385 Identities=11% Similarity=0.064 Sum_probs=218.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF 206 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 206 (534)
++.-|+.+.+....... .-...+-..+...+...|++++|...+..+.+.. .++...+..+...+.-.|.+.+|..+.
T Consensus 37 DytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 45667777776653221 2223455567778889999999999999887765 456678888888888899999998876
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 207 NRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 207 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
.+. +.++..-..++..--+.|+-++-..+.+.+.+. ..---+|.......-.+++|++++.+....+ |+
T Consensus 115 ~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~e 183 (557)
T KOG3785|consen 115 EKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PE 183 (557)
T ss_pred hhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hh
Confidence 543 234444555666666778887777777766542 2333455555555667899999999988753 44
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH--------------HHHc
Q 009470 287 VYTYSIV-IDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQ--------------MKRL 351 (534)
Q Consensus 287 ~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------~~~~ 351 (534)
-...|.- .-+|.+..-++-+.++++-..+.- +-+....|.......+.=.-..|.+-.+. +.+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 4444443 345677888888888888776652 22334444333322221111111111111 1111
Q ss_pred C------------CCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCChh
Q 009470 352 G------------CEA-----DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCI-----SKLGDVN 409 (534)
Q Consensus 352 g------------~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-----~~~g~~~ 409 (534)
+ +-| =+..--.|+-.|.+.+++.+|..+.+++.-. .|.......+..+- .....+.
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 1 001 1122334555678999999999998876532 23332222222221 1111233
Q ss_pred HHHHHHHHHHhCCCC----CCHH----------------HH---------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 410 GAHRMYGKMKDLKCE----PNTV----------------TY---------------NILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 410 ~A~~~~~~m~~~~~~----p~~~----------------~~---------------~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
-|.+.|+..-+.+.. |... +| -.+.++++..|++.+|.++|-.+.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 455555544333221 1111 11 234566666777777777776665
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 009470 455 ENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTA 531 (534)
Q Consensus 455 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 531 (534)
...++.+..-...+.++|.+.|+.+-|++++-++-. +.+ ......+.+-|.+.+++--|.+.|+.+...+..|
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 544333333334445567777777777665433321 111 2233444556777777777777777666554433
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.2e-07 Score=85.37 Aligned_cols=356 Identities=14% Similarity=0.113 Sum_probs=190.0
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 123 RHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEA 202 (534)
Q Consensus 123 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 202 (534)
-..+++..|+..|..++... +++...|..-...|.+.|++++|++--.+-.+.+ |.-...|.....++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHH
Confidence 35678999999999998754 3477899999999999999999987777766664 44578899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------Hhhcc----CCCCHHHHHHHHHHHHhc-------
Q 009470 203 VHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFD------SLKDK----FEPDVIVYTNLVRGWCRA------- 265 (534)
Q Consensus 203 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~------~~~~~----~~~~~~~~~~li~~~~~~------- 265 (534)
+..|.+-.+.. +-+...+..+..++.... .+.+.|. .+... .......|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988754 445666777777762111 1111111 11110 000111222222222111
Q ss_pred ---CCHHHHHHHHHHH-----HHCC-------CCCC----------------------HHHHHHHHHHHHHcCCHHHHHH
Q 009470 266 ---GNISEAERVFREM-----KMAG-------IQPN----------------------VYTYSIVIDALCRCGQITRAHD 308 (534)
Q Consensus 266 ---g~~~~A~~~~~~m-----~~~g-------~~p~----------------------~~~~~~ll~~~~~~g~~~~A~~ 308 (534)
.++..|...+... ...| ..|. ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111121111100 0001 1110 1113445666667777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH-------HHHHHHHcCChHHHHHHHH
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF-------LIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~ 381 (534)
-+....+.. -+..-++....+|...|.+.+....-....+.|- -...-|+. +..+|.+.++++.|...|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777777654 3444555566677777777766666665555541 11122222 3335556677777777777
Q ss_pred HHHHCCCCCCHHHHH-------------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009470 382 SMVRKGCNPNASTFN-------------------------MIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQM 436 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~-------------------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 436 (534)
+.......|+...-. .-...+.+.|++..|++.|.+++... +-|...|....-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 765543332221110 01122334445555555555544443 2244445444445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
|.+.|.+..|++-.+...+.. ++....|..=..++....+|++|++.|++.++
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555544444444431 22222233333333334445555555554444
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=7.1e-06 Score=79.90 Aligned_cols=368 Identities=15% Similarity=0.144 Sum_probs=216.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
..-.=++.+.+.|++++|.+..+.+...+ +.+...+..-+.+.++.+++++|+.+.+.-.. ...+...+-.-..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHH
Confidence 33445677889999999999999998876 67888899999999999999999966544321 1112222112233444
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----------------------
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP-N---------------------- 286 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~---------------------- 286 (534)
+.+..++|+..++-... .|..+...-.+.+.+.|++++|+++|+.+.+.+.+- +
T Consensus 91 rlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 78999999998883332 355677777889999999999999999986553210 0
Q ss_pred ----HHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCC------CCC---HHHH-----HHHHHHHHHcCChhHHHHHH
Q 009470 287 ----VYTYSIV---IDALCRCGQITRAHDVFAEMLEVGC------EPN---SITF-----NNLMRVHVKASRTEKVLQVY 345 (534)
Q Consensus 287 ----~~~~~~l---l~~~~~~g~~~~A~~~~~~m~~~~~------~~~---~~~~-----~~li~~~~~~g~~~~a~~~~ 345 (534)
..+|..+ ...+...|++.+|+++++...+.+. ..+ ...= .-+.-++-..|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1122222 2334567888888888887733210 111 1111 11233566788888888888
Q ss_pred HHHHHcCCCCChhhH----HHHHHHHHHcCChH----------------HHHHHH-------------------------
Q 009470 346 NQMKRLGCEADTITY----NFLIDCHCKDGKLE----------------DAIKVL------------------------- 380 (534)
Q Consensus 346 ~~~~~~g~~~~~~~~----~~li~~~~~~g~~~----------------~A~~~~------------------------- 380 (534)
....+.. .+|.... |.|+..-....-++ .+...+
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 8888765 3333221 11111100000000 000000
Q ss_pred HHHHHC--CCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----
Q 009470 381 NSMVRK--GCNPNASTFNMIFRCIS--KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKK----- 451 (534)
Q Consensus 381 ~~m~~~--~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~----- 451 (534)
++.... +..|.. .+..++..+. +.....+|.+++...-+....-.....-.+++.....|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 327 RELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 000000 111222 2223332222 222355666666666554322234455667778888999999999998
Q ss_pred ---HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 452 ---EMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKC-LKPGS----SVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 452 ---~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
.+.+.+..|. +...++..+.+.++.+.|..++.++++.-. -.+.. .++..++..=.+.|+-++|..++++
T Consensus 406 ~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 406 WKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 5555544444 445566667777777767777766654210 01111 2233334444667999999999999
Q ss_pred HHHc
Q 009470 524 MVDR 527 (534)
Q Consensus 524 ~~~~ 527 (534)
+.+.
T Consensus 484 l~k~ 487 (652)
T KOG2376|consen 484 LVKF 487 (652)
T ss_pred HHHh
Confidence 9884
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=8.8e-06 Score=73.98 Aligned_cols=309 Identities=11% Similarity=0.044 Sum_probs=214.6
Q ss_pred CCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-H
Q 009470 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITV-D 184 (534)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~ 184 (534)
..+|..+..-+.....+...+++..||.-|..+.+. -+.+-.++..-...|...|+-..|+.-+.+..+.. ||- .
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ 107 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMA 107 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHH
Confidence 356777777777776666667788899988888753 12233355555678888999999988888887763 432 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHH------------HHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP--DKIA------------FSIVISILCRKRRASEAQSFFDSLKDKFEP 250 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~------------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 250 (534)
+...-...+.+.|.+++|..-|+...+....- .... ....+..+...|+...|+.+...+.+-.+.
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence 22223346789999999999999998764211 1111 122334456678999999999999998899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNL-- 328 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-- 328 (534)
|+..|..-..+|...|++..|+.-++...+..- -+..++..+-..+...|+.+.++...++..+. .||...+-..
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 999999999999999999999887777665432 25666667778888999999999999998876 4554433221
Q ss_pred -----------HHHHHHcCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009470 329 -----------MRVHVKASRTEKVLQVYNQMKRLGCEADT---ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394 (534)
Q Consensus 329 -----------i~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 394 (534)
+......++|.++++..+...+..-.... ..+..+-.++...|++.+|++...+..+.. +-|+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHH
Confidence 11234456666777776666655322112 233445566677788888888888877653 224777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 009470 395 FNMIFRCISKLGDVNGAHRMYGKMKDLK 422 (534)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 422 (534)
+.--..+|.-..+++.|+.-|+...+.+
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777778887788888888888877654
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.4e-06 Score=79.93 Aligned_cols=366 Identities=13% Similarity=0.086 Sum_probs=223.6
Q ss_pred hhhhhhccccCCCCChHHHHHHHHhhhc--ccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 009470 94 LSLGFSQISTAHSISPSTVRHVIEKSCG--VRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFI 171 (534)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 171 (534)
+..+...++.+..++|. .|||...+. +...+++..|+.--....+ -.+.-+..|+.....+.-.|++++|+.-|
T Consensus 18 ~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred HHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 33445555566677776 566644332 2222344444432222221 12334568999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHcC---CCCCHHHHHHHHHHHH----------hcC
Q 009470 172 DLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF------NRMEEYG---CAPDKIAFSIVISILC----------RKR 232 (534)
Q Consensus 172 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~g---~~~~~~~~~~ll~~~~----------~~g 232 (534)
.+=.+.. +.+...++.+..++.... .+.+.| ..+...- .......|..++..+- ...
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 9887775 456677777777772111 011111 1111000 0001112222222211 111
Q ss_pred CHHHHHHHHHHhh------c-------cCCC----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 233 RASEAQSFFDSLK------D-------KFEP----------------------DVIVYTNLVRGWCRAGNISEAERVFRE 277 (534)
Q Consensus 233 ~~~~A~~~~~~~~------~-------~~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (534)
++..|.-.+.... . ...| -..-+..+.....+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1222222211100 0 0011 112245677888888899999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHH
Q 009470 278 MKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNL-------MRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 278 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~~ 350 (534)
..+.. -+..-++....+|...|.+.+.....+...+.|.. ...-|+.+ ..+|.+.++++.++..|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 88764 35666777888899999998888888887776622 33333333 3356667788888888887655
Q ss_pred cCCCCChhh-------------------------HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009470 351 LGCEADTIT-------------------------YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 351 ~g~~~~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 405 (534)
....|+... ...-.+.+.+.|++..|.+.|.+++++. +-|...|....-+|.+.
T Consensus 327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL 405 (539)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Confidence 433332221 1222456778999999999999999997 34789999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009470 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG 474 (534)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 474 (534)
|.+..|++--+..++.. ++....|..=..++.-..+++.|.+.|.+..+. .|+..-+..-+.-|..
T Consensus 406 ~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 99999999988888764 334455655566666778999999999999886 4554444333333333
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.3e-06 Score=77.79 Aligned_cols=398 Identities=12% Similarity=0.093 Sum_probs=250.9
Q ss_pred hHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH-
Q 009470 109 PSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS- 187 (534)
Q Consensus 109 ~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~- 187 (534)
..-...++.++- +..++.+|++....-.++. +.+....+.+...|....++..|-+.++.+-... |...-|.
T Consensus 10 EGeftaviy~lI---~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl 82 (459)
T KOG4340|consen 10 EGEFTAVVYRLI---RDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL 82 (459)
T ss_pred CCchHHHHHHHH---HHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH
Confidence 344667776553 3345777887777666543 2366788889999999999999999999987764 3333332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI--LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
--...+.+.+.+.+|+++...|... ++...-..-+.+ ....+++..+..+.+++... .+..+.+.......+.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeecc
Confidence 3456677899999999999888642 232222222222 23467888888888887632 2666777777788899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------CH----------
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP-------------NS---------- 322 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~---------- 322 (534)
|++++|.+-|+...+-+---....|+..+. ..+.|+++.|++...++++.|++. |+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 999999999999988654446678886664 556789999999999999998762 21
Q ss_pred -----HHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009470 323 -----ITFNNLMRVHVKASRTEKVLQVYNQMKRL-GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFN 396 (534)
Q Consensus 323 -----~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 396 (534)
..+|.-...+.+.|+++.|.+.+..|.-+ ....|+.|...+.-. -..+++.+..+-+.-+...+. .-..||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHH
Confidence 12333334567889999999988888532 235677776655432 224566666776777766654 4567899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 009470 397 MIFRCISKLGDVNGAHRMYGKMKDLKC-EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGM 475 (534)
Q Consensus 397 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 475 (534)
.++-.||+..-++.|-+++.+-..... -.+...|+.|=......-..+++.+-++.+... +.-......+-+.--...
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 999999999999999888865432211 123444443333233345677777776666542 000111111112211122
Q ss_pred CC---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 476 GH---WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 476 g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
++ ...|++-+++..+.. ..+.......+.+..++..++++|..-.+.
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~Y-----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKY-----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22 122333333333322 112223344566778899999999876653
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=6e-06 Score=75.33 Aligned_cols=385 Identities=13% Similarity=0.096 Sum_probs=223.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--------------C---------
Q 009470 124 HGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNV--------------E--------- 180 (534)
Q Consensus 124 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--------------~--------- 180 (534)
|.+++.+|+..+..+.+.. .++.+.+-.+.-.+.-.|.+.+|..+.....+... +
T Consensus 69 hLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred hhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3457899999999888744 34455555555555566777777766654332210 0
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 181 --ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI-SILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 181 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
.+..--.++.......-.+++|++++.+....+ |+-...|.-+ -+|.+..-++-+.++++.....++.++.+.|.
T Consensus 147 LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NL 224 (557)
T KOG3785|consen 147 LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNL 224 (557)
T ss_pred HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHH
Confidence 000111122222222334667777777776532 5555555433 34456666777777777766667777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--C--------C---------------------HHHHHHHHHHHHHcCCHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKMAGIQ--P--------N---------------------VYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~--p--------~---------------------~~~~~~ll~~~~~~g~~~~A 306 (534)
.+....+.=+-..|++-..++.+.+-. | + +..--.|+-.|.+.+++.+|
T Consensus 225 kacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 225 KACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred HHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHH
Confidence 666666544434444444555443210 0 0 00011223345667777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHcCChHHHHH
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASR-------TEKVLQVYNQMKRLGCEADT-ITYNFLIDCHCKDGKLEDAIK 378 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~ 378 (534)
..+.+++. +.++.-|..-.-.+...|+ ..-|.+.|+..-+.+..-|. ..-..+..++.-..++++.+.
T Consensus 305 ~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 305 ISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 77766654 2223222222222233332 23344444444444433332 234556666666777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 379 VLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTY-NILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 379 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
.++.+..--..-|...+ .+.++.+..|.+.+|+++|-++....++ |..+| ..|.++|.+++..+.|+.++-++..
T Consensus 381 YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-- 456 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-- 456 (557)
T ss_pred HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--
Confidence 88777665333333333 4788899999999999999988766555 44555 5567789999999999877665532
Q ss_pred CCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 009470 458 VEPNVNTYR-ILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 458 ~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
+.+..... .+.+-|.+.+++=-|-+.|+.+.. +.|+++.|..- .-....+|..+....-+|.|
T Consensus 457 -~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnWeGK---------RGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 457 -PSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENWEGK---------RGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccccCCc---------cchHHHHHHHHHcCCCCCCc
Confidence 33444444 445578889998888888988766 57888887632 22333455555555444544
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=3e-06 Score=94.05 Aligned_cols=336 Identities=11% Similarity=0.058 Sum_probs=214.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHH
Q 009470 157 LAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC------APD--KIAFSIVISIL 228 (534)
Q Consensus 157 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~ll~~~ 228 (534)
.+...|+++.+..+++.+.......+..........+...|++++|..+++.....-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445577777777766653221111222334455566788999999999988754210 111 11222333455
Q ss_pred HhcCCHHHHHHHHHHhhccCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEP-D----VIVYTNLVRGWCRAGNISEAERVFREMKMA----GI-QPNVYTYSIVIDALC 298 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~ll~~~~ 298 (534)
...|++++|...++......+. + ....+.+...+...|++++|...+++.... |. ......+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999886543222 2 234566777788899999999999888643 11 111234556677788
Q ss_pred HcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCC--ChhhHHHHHHHH
Q 009470 299 RCGQITRAHDVFAEMLEV----GCE--P-NSITFNNLMRVHVKASRTEKVLQVYNQMKRLG--CEA--DTITYNFLIDCH 367 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~--~~~~~~~li~~~ 367 (534)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886543 211 1 22334555667788899999999998875431 112 233445566778
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNP-NASTF-----NMIFRCISKLGDVNGAHRMYGKMKDLKCEPN---TVTYNILMQMFA 438 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 438 (534)
...|++++|.+.+.++....... ....+ ...+..+...|+.+.|.+++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 89999999999998875431111 11111 1122444568899999999877654221111 112345667788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 439 TSKSTDMVLKLKKEMEEN----EVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
..|+.++|...+++..+. |...+ ..+...+..++.+.|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999887653 32222 2456667778899999999999999998864
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=4.6e-06 Score=75.78 Aligned_cols=313 Identities=12% Similarity=0.124 Sum_probs=188.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 171 IDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-KIAFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 171 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
|+-....+-+.++.-..-+...+...|++.+|+.-|....+.+ |+ -.++-.-...|...|+-..|+.-++++.+. +
T Consensus 26 ~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-K 102 (504)
T KOG0624|consen 26 LEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-K 102 (504)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-C
Confidence 3333333433455556677788888899999998888887632 33 233444455677788888888888877663 4
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHH------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 250 PDVI-VYTNLVRGWCRAGNISEAERVFREMKMAGIQPN--VYTY------------SIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 250 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~------------~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
||-. .--.-...+.+.|.+++|..-|+...+....-+ ...+ ...+..+.-.|+...|++....++
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 4432 233345567888999999999988887642111 1111 122334455677777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009470 315 EVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 394 (534)
+.. +.|...|..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++..+++..+.+ ||...
T Consensus 183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~ 258 (504)
T KOG0624|consen 183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKL 258 (504)
T ss_pred hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhh
Confidence 664 4466666666777777777777777666665554 3445555556667777777777777777777653 44322
Q ss_pred HHH----H---------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 395 FNM----I---------FRCISKLGDVNGAHRMYGKMKDLKCEPNTVT---YNILMQMFATSKSTDMVLKLKKEMEENEV 458 (534)
Q Consensus 395 ~~~----l---------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 458 (534)
.-. + +......+++.++.+-.+...+......... +..+-.++...+++.+|++...+..+..
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d- 337 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID- 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-
Confidence 111 1 1112334555555555555554432211222 2333445555667777777777766642
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+.|..++.--..+|.-...|++|+.-|+.+.+.
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 233666666666776667777777777777663
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=2.3e-08 Score=93.33 Aligned_cols=255 Identities=13% Similarity=0.093 Sum_probs=162.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKF-EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 304 (534)
+.+.-.|++..++.-.+ ..... ..+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888886665 32221 223445667788899999877554 3443332 566666655554444334555
Q ss_pred HHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITF-NNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
.++.-+++....+...+..++ ......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555544433323222233 23334566788999998887642 45667777889999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 384 VRKGCNPNASTFNMIFRCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE 459 (534)
Q Consensus 384 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 459 (534)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. +.++..+.+.+..++...|++++|.+++++..+.+ +
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8763 33444445444432 34689999999998664 45788888889999999999999999999887654 4
Q ss_pred CCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCCHH
Q 009470 460 PNVNTYRILITMYCGMGHW-NNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 460 p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~p~~~ 499 (534)
-+..++..+|.+....|+. +.+.+++.++... .|+..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~---~p~h~ 270 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS---NPNHP 270 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH---TTTSH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh---CCCCh
Confidence 4566777777777788877 6677888888774 35543
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=6.5e-08 Score=90.25 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=74.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH----HcC
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC----KDG 371 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g 371 (534)
.+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455555555555431 234444455555666666666666666655432 22 22222333322 223
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 009470 372 KLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKST-DMVLKLK 450 (534)
Q Consensus 372 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~l~ 450 (534)
.+.+|..+|+++.++ ..+++.+.+.+..+....|++++|.+++.+..+.+. -+..+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466666666665544 334556666666666666666666666666554432 2444555555555555554 4455566
Q ss_pred HHHHH
Q 009470 451 KEMEE 455 (534)
Q Consensus 451 ~~m~~ 455 (534)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 66554
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=2.9e-05 Score=78.09 Aligned_cols=346 Identities=12% Similarity=0.092 Sum_probs=234.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC--CCCHHH
Q 009470 177 RNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKF--EPDVIV 254 (534)
Q Consensus 177 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 254 (534)
..+..+...|..+.-+..+.|+++.+.+.|++.... .--....|..+...|...|.-..|..+++.-...- ++|...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344457788999999999999999999999998754 23456778888889999999999999988754432 555666
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcC-
Q 009470 255 YTNLVRGWCR-AGNISEAERVFREMKMA--GI--QPNVYTYSIVIDALCRC-----------GQITRAHDVFAEMLEVG- 317 (534)
Q Consensus 255 ~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~m~~~~- 317 (534)
+-.....|.+ -+.+++++++-.+.... |. ......|..+.-+|... ....++++.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 6555555554 47788888777777652 11 12344555555555432 23467888888888775
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC-------
Q 009470 318 CEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK-GCN------- 389 (534)
Q Consensus 318 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~------- 389 (534)
-.|++..| +.--|...++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...+. |..
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 23333333 34456778999999999999998865788899999999999999999999999877654 210
Q ss_pred -----------CCHHHHHHHHHHHHh-----------------------cCChhHHHHHHHHH--------HhCC-----
Q 009470 390 -----------PNASTFNMIFRCISK-----------------------LGDVNGAHRMYGKM--------KDLK----- 422 (534)
Q Consensus 390 -----------~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~m--------~~~~----- 422 (534)
-...|...++..+-. .++..+|.+....+ +..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 011122222222210 00111111111111 0011
Q ss_pred ----C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 423 ----C--EPN------TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 423 ----~--~p~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
. .|+ ...|......+.+.+..++|...+.+..... +.....|......+...|++++|.+.|..+..
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0 111 1234455667788888899998888887652 44556677777778889999999999999988
Q ss_pred cCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCC
Q 009470 491 EKCLKPG-SSVYEMVLQQLRRAGQLQKHEE--LVEKMVDRGF 529 (534)
Q Consensus 491 ~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~g~ 529 (534)
- .|+ +.....+...+.+.|+...|.. ++..+++.+.
T Consensus 713 l---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 713 L---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred c---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 4 454 5667889999999998888888 8888888764
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.9e-05 Score=80.04 Aligned_cols=332 Identities=14% Similarity=0.160 Sum_probs=195.3
Q ss_pred CCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CC
Q 009470 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTA-RPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE--IT 182 (534)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--~~ 182 (534)
+.++.++..||..-..++ ..+.+.+.. .-+...+|+..+..+.++...+-..+.+++++++.-.+.. -+
T Consensus 949 R~D~~LW~~VL~e~n~~r--------RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~ 1020 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYR--------RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN 1020 (1666)
T ss_pred ccChHHHHHHHhccChHH--------HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc
Confidence 468888999986543322 223333332 2233457888888899999999999999999988754322 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC-----------------------APDKIAFSIVISILCRKRRASEAQS 239 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------------------~~~~~~~~~ll~~~~~~g~~~~A~~ 239 (534)
...-|.|+-...+. +..+..+..+++...+. ..+..+.+.++. ..+.++.|.+
T Consensus 1021 ~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1021 RNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred hhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHH
Confidence 33344455444433 33445555555544331 111222222221 1233444444
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 240 FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCE 319 (534)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (534)
+-++.. ....|..+..+-.+.|.+.+|++-|-+.. |...|.-+++...+.|.|++-.+++....+..-.
T Consensus 1097 fAe~~n-----~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1097 FAERCN-----EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred HHHhhC-----ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 433332 35677778888888888877777665432 5667777888888888888888777766665544
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIF 399 (534)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 399 (534)
|.+. +.+|-+|++.++..+.++.+ ..||......+.+-|...|.++.|.-+|... .-|..+.
T Consensus 1166 ~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La 1227 (1666)
T KOG0985|consen 1166 PYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLA 1227 (1666)
T ss_pred ccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHH
Confidence 4443 35677777777776655543 1466666666777777777777776666533 3466666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
..+...|++..|.+.-++. .+..||..+-.+|...+.+.-| +|-..++.....-..-++..|...|-++
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 7777777777776654433 2555666666666555444322 2222223334445556666666666666
Q ss_pred HHHHHHHHHH
Q 009470 480 NAYKYIREMI 489 (534)
Q Consensus 480 ~A~~~~~~~~ 489 (534)
+-+.+++..+
T Consensus 1297 ElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1297 ELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHhhh
Confidence 6666665543
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=7e-06 Score=82.64 Aligned_cols=240 Identities=17% Similarity=0.188 Sum_probs=158.6
Q ss_pred CHHHHHHHH--HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC--------C
Q 009470 147 SPDLYHEMI--NLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY-GC--------A 215 (534)
Q Consensus 147 ~~~~~~~li--~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~ 215 (534)
++.+-.+++ ..|..-|++|.|.+-.+.++.. .+|..|...|.+..+.+-|.-.+..|... |. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 444555555 3456779999998777665543 58999999999988888777766666421 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 216 PDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVID 295 (534)
Q Consensus 216 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 295 (534)
++ .+-..+.-.....|.+++|+.+|++-+. |..|=..|...|.+++|+++-+.--+ +. =..||.....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAK 866 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHH
Confidence 22 2222233344677889999999887654 55666677788999999887654322 11 1245656666
Q ss_pred HHHHcCCHHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009470 296 ALCRCGQITRAHDVFAEM----------LEVG---------CEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD 356 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 356 (534)
.+-..++++.|++.|++. .... -..|...|.-....+-..|+.+.|+.+|....+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 666778888888877653 1111 012444455555555667777777777766653
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
|-.+++..|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|.+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456677777888888888876653 266677778888889999999998887764
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=5e-07 Score=89.79 Aligned_cols=239 Identities=15% Similarity=0.138 Sum_probs=183.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 249 EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNL 328 (534)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 328 (534)
+|--..-..+...+...|-..+|..+++++. .|.-++.+|+..|+..+|..+.....++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444455667888889999999999998775 4667888899999999999988888774 7888888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDV 408 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 408 (534)
.+......-+++|.++.++.... .-..+.....+.++++++.+.++.-.+.+ .....+|-....+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888765433 12222233345789999999999877764 23567888888888899999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 409 NGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
+.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999888754 3356789999999999999999999999999877 556677888888888999999999999988
Q ss_pred HHcCCCCCCHHHHHHHHHHH
Q 009470 489 IEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 489 ~~~~~~~p~~~~~~~l~~~~ 508 (534)
.+.....-|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 76443233444444444433
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=5.9e-05 Score=77.87 Aligned_cols=331 Identities=12% Similarity=0.170 Sum_probs=185.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYG--CAPDKIAF 221 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~ 221 (534)
.+++.|+.++.- .-..-+++.+...+.+++ -|.......+.++...+-+.+-+++++++.-.. +.-+...-
T Consensus 950 ~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 467788877631 112234566666666544 356778888999999999999999999986322 11222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------------
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG------------------- 282 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------------- 282 (534)
|.++-...+ -+..+..+..+++..-..|+ +.......+-+++|+.+|++....+
T Consensus 1025 nLLiLtAik-ad~trVm~YI~rLdnyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~ef 1097 (1666)
T KOG0985|consen 1025 NLLILTAIK-ADRTRVMEYINRLDNYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEF 1097 (1666)
T ss_pred hhHHHHHhh-cChHHHHHHHHHhccCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHH
Confidence 444433333 34555666666665432232 2233444455566666555432100
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 009470 283 --IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITY 360 (534)
Q Consensus 283 --~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 360 (534)
-.-....|..+..+-.+.|.+.+|++-|-+. -|+..|..+++...+.|.+++..+.+....+..-.|.. =
T Consensus 1098 Ae~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d 1169 (1666)
T KOG0985|consen 1098 AERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--D 1169 (1666)
T ss_pred HHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--h
Confidence 0002334555555555556666555544322 24555666666666666666666666555554433332 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009470 361 NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS 440 (534)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (534)
..||-+|++.++..+-.+.+. -|+......+.+-|...|.++.|.-+|... ..|..|...+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHH
Confidence 455666666666555443331 255555566666666666666665555433 3355666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 441 KSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEEL 520 (534)
Q Consensus 441 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 520 (534)
|++..|...-++. .+..||..+-.+|...+.+.-| +|...+ +-....-...++..|...|-+++...+
T Consensus 1234 geyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~-iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLN-IIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred HHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCce-EEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence 7777666544433 2557788777788777766544 222222 223444566677777777777777766
Q ss_pred HHHH
Q 009470 521 VEKM 524 (534)
Q Consensus 521 ~~~~ 524 (534)
++..
T Consensus 1302 ~Ea~ 1305 (1666)
T KOG0985|consen 1302 LEAG 1305 (1666)
T ss_pred HHhh
Confidence 6643
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=0.00015 Score=70.18 Aligned_cols=130 Identities=12% Similarity=0.208 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP-NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
+|...++...+...++.|..+|.+..+.+..+ +...+++++..|| .++.+-|.++|+--.++ +.-+..--...+..+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 45555555555566666666666666655444 4555566666555 35556666666654433 122233334555555
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPG--SSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
...++-..|..+|++.+... +.++ ..+|..+++.=..-|+++.+.++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~-l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSV-LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhcc-CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666652 3333 35566666666666666666666555543
No 102
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=1.4e-05 Score=75.79 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR-RASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
++..+-..+...++.++|+.+.+++.+.. +-+..+|+..-.++...| ++++++..++++....+.+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 44444445555566666666666666532 222334444444444444 3566666666655555555555555544444
Q ss_pred hcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 264 RAGNI--SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329 (534)
Q Consensus 264 ~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 329 (534)
+.|+. ++++.+++++.+...+ +..+|+.....+.+.|+++++++.++++++.+. -|...|+...
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~ 183 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRY 183 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHH
Confidence 44442 4455555555544322 455555555555555555555555555555542 2444444433
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=4.4e-06 Score=83.02 Aligned_cols=292 Identities=17% Similarity=0.183 Sum_probs=159.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.-...+..+...|+-++|-++- ... .--.+.|..|.+.|.+.+|......-.. +..|......+..++.
T Consensus 591 lk~sy~q~l~dt~qd~ka~elk----~sd-----gd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali 659 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAELK----ESD-----GDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI 659 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhhc----ccc-----CccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH
Confidence 4445556666677776665432 221 1112457778888888777765432222 2345555555555555
Q ss_pred hcCCHHHHHHHHHHhhcc-----------------------CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 230 RKRRASEAQSFFDSLKDK-----------------------FEPDVIVY-TNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
+..-+++|-.+|+++..- +|..+++. ......+...|+++.|..-|-+..
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------ 733 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------ 733 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------
Confidence 544445555555444320 11111111 122223333444444444443321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
.....+.+......|.+|+.+++.+.... .-..-|..+...|...|+++.|.++|.+.- .++-.|.
T Consensus 734 ---~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~ 799 (1636)
T KOG3616|consen 734 ---CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAID 799 (1636)
T ss_pred ---hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHH
Confidence 12233455556677888888888777653 233456667778888888888888876542 2455677
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
.|.+.|++++|.++-.+... .......|.+-..-+-+.|++.+|+++|-.+. .|+ ..|++|-+.|..+.
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDD 868 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchH
Confidence 78888888888887766543 34455666666666777777777777764443 233 23566667777666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIR 486 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 486 (534)
.+++.++-.... -..|...+..-|-..|+..+|...|-
T Consensus 869 mirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 869 MIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 666655432110 11233344444445555555554443
No 104
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=1e-05 Score=76.65 Aligned_cols=209 Identities=8% Similarity=0.004 Sum_probs=138.6
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009470 156 NLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234 (534)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 234 (534)
.++.+.++.++|+.+.+++.+.+ +-+..+|+.....+...| +++++++.++++.+.. +.+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445567778888888777765 345567776666666677 5788888888887654 34455666555455555553
Q ss_pred --HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCH----HH
Q 009470 235 --SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC---GQI----TR 305 (534)
Q Consensus 235 --~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~----~~ 305 (534)
++++.+++++.+..+.+..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56778887877777778888888888888888899999999988887654 566666665555443 222 45
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKA----SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCK 369 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 369 (534)
.++...+++... +-|...|+.+...+... ++..+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666666666654 34666777777666652 33455767666665543 3455666667776664
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=4.8e-05 Score=76.86 Aligned_cols=224 Identities=15% Similarity=0.202 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CC-------CCCHHHHHHHHHHHHHcCC
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR-NV-------EITVDTFSILVRRYVRAGL 198 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~-------~~~~~~~~~li~~~~~~g~ 198 (534)
..+.|.+-...+. +..+|..|..++.+.++.|-|.-.+-.|... |. ..+...=..........|.
T Consensus 743 ~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 743 SMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred cHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 4555555555443 4569999999999999999988777666432 11 0111222223334456788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
.++|..+|++-++.+ .|=..|-..|.+++|.++-+.-. ++. -..||......+-..++++.|++.|++.
T Consensus 816 lEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~D-RiH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKD-RIH-LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcc-cee-hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 999999998887643 44456667888888888765421 111 2345666677777778888888777653
Q ss_pred H----------HCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 009470 279 K----------MAG---------IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTE 339 (534)
Q Consensus 279 ~----------~~g---------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (534)
. ... -..|...|..-...+-..|+.+.|+.+|..... |-.+++..|-.|+.+
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTD 955 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCch
Confidence 1 111 011333344444444456777777777766542 444555666666666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 340 KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 340 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
+|-++-++- -|......|.+.|-..|++.+|...|.+.
T Consensus 956 kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 956 KAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666554432 24445555666666666666666666544
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=1.4e-05 Score=79.53 Aligned_cols=167 Identities=18% Similarity=0.229 Sum_probs=95.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 304 (534)
+.+......+.+|+.+++.+..+ +.-...|..+...|...|+++.|+++|.+.- .++-.|.+|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 33444556677777777766543 1223446677778888888888888876542 3455677788888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
.|.++-++... .......|.+-..-+-+.|++.+|.++|-.+. .|+. .|..|-+.|..+...++..+-.
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 88877766542 23344555555555666777777766654332 2322 3455666666665555554332
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 385 RKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
.. .-..|...+..-+...|++..|+.-|
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 11 11223334444444455555554444
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.7e-06 Score=83.97 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=95.6
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 238 (534)
.+.|+...|.-.|+...+.+ |-+...|..|......+++-..|+..+++..+.. +-+..++-.|.-.|...|.-.+|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 34555555555555555554 3345555555555555555555555555555532 223444555555555555555555
Q ss_pred HHHHHhhccCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 239 SFFDSLKDKFEP---------DVIVYTNLVRGWCRAGNISEAERVFREMK-MAGIQPNVYTYSIVIDALCRCGQITRAHD 308 (534)
Q Consensus 239 ~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 308 (534)
+.++.-...-++ +...-+. ..+.....+....++|-++. ..+..+|...+..|.-.|.-.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555443211000 0000000 01111111222233333332 22222344444444444555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD-TITYNFLIDCHCKDGKLEDAIKVLNS 382 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (534)
.|+..+... +-|...||.|...+....+.++|+..|.+..+. .|+ +.+...|.-+|...|.+++|.+.|-.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 555554443 224444555555555555555555555555443 222 22333334444555555555544443
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.2e-06 Score=84.97 Aligned_cols=218 Identities=11% Similarity=0.124 Sum_probs=143.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDA 376 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 376 (534)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 556777888877777777764 3366777777777777777777777777777764 45566777777778888877788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009470 377 IKVLNSMVRKGCNPNASTFNMIF-----------RCISKLGDVNGAHRMYGKM-KDLKCEPNTVTYNILMQMFATSKSTD 444 (534)
Q Consensus 377 ~~~~~~m~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (534)
+++++.-+...++ |..+. ..+.....+....++|-++ .+.+-.+|......|.-.|.-.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8777776554211 00000 0111111233344444444 33443466777777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS-SVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
+|...|+.+.... +-|..+||.|...+....+.++|+..++++++ +.|+. .....|.-.|...|.+++|.+.+-.
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 8888888877753 55667788888888888888888888888877 45653 3444566677777888877776655
Q ss_pred HH
Q 009470 524 MV 525 (534)
Q Consensus 524 ~~ 525 (534)
++
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 44
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=1.4e-05 Score=85.12 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEV-GCEP---NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
....|-..|......++.++|.++.++.... ++.. -...|.++++....-|.-+...++|+++.+. .....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4566888888889999999999999998753 1111 2346777788778888888999999999875 34456788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN---TVTYNILMQMFA 438 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 438 (534)
.|...|.+.+.+++|.++++.|.++- ......|...+..+.+.++-+.|.+++.+..+. -|. .....-.++.-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 99999999999999999999999872 357788999999999999999999999998764 333 334455666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS--SVYEMVLQQLRRAGQLQK 516 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 516 (534)
+.|+.+.+..+|+..... .+-....|+.+|+.=.++|+.+.+..+|++++..+ +.|.. ..|..++..=...|+-+.
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhHhHHHHHHHHHHHHhcCchhh
Confidence 899999999999998875 35567889999999999999999999999999977 65543 456677766666677666
Q ss_pred HHHHHHHHH
Q 009470 517 HEELVEKMV 525 (534)
Q Consensus 517 a~~~~~~~~ 525 (534)
++.+=.++.
T Consensus 1690 vE~VKarA~ 1698 (1710)
T KOG1070|consen 1690 VEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHH
Confidence 655544443
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=2.7e-05 Score=80.34 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYG-CAPDKIAFSIVISIL 228 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~ 228 (534)
.|..|...|....+...|...|+...+.+ .-+...+....+.|++..+++.|..+.-..-+.. .......|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 56666666666666666666666666654 3355566666666666666666666522221110 000111122223334
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.+.++...|...|+....-.|.|...|..+..+|.+.|++..|.++|.+...
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 4556666666666655554555566666666666666666666666655544
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=8.3e-06 Score=81.42 Aligned_cols=241 Identities=13% Similarity=0.127 Sum_probs=184.3
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009470 142 PEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAF 221 (534)
Q Consensus 142 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 221 (534)
++++|-...-..+.+.+.+.|-...|..+++++ ..|.-+|..|...|+..+|..+..+..+ -+||...|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly 460 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY 460 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH
Confidence 345556667778888999999999999999875 4677799999999999999998887776 36888999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
..+.+......-+++|.++++....+ +-..+.......++++++.+.|+.-.+.+ ..-..+|-.+..+..+.+
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 99888888777888999888876443 22333333445789999999998876653 225667878888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
+++.|.+.|....... +-+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-...+.|.+++|.+.+.
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999888764 3357789999999999999999999999998877 5566677777777889999999999998
Q ss_pred HHHHCCC-CCCHHHHHHHHHHH
Q 009470 382 SMVRKGC-NPNASTFNMIFRCI 402 (534)
Q Consensus 382 ~m~~~~~-~~~~~~~~~l~~~~ 402 (534)
++..... ..|..+...++...
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHH
Confidence 8765311 12444444444443
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=1.2e-05 Score=84.68 Aligned_cols=238 Identities=14% Similarity=0.163 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009470 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK-IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLV 259 (534)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 259 (534)
.+...|..|+..|...|++++|.++.+...+. .|+. ..|-.+...+...++.+++.-+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh----------------hhh
Confidence 35678889999999999999999998876664 3443 3333333356666665554433 333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 009470 260 RGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTE 339 (534)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (534)
.......++.....+...|.+.+ -+-..+..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 34444455544555555555532 234467778888889999999999999998887 55788888888888888 889
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 340 KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 340 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
+|.+++.+.... +...+++.++..+|.++....+. +...+. ++.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHH
Confidence 998888887764 56667888888888888776322 222222 2222222
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 420 DL-KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 420 ~~-~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
.. |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 11 112233455556666777778888888888887764 335555555665554
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.3e-08 Score=58.94 Aligned_cols=32 Identities=41% Similarity=0.922 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 282 GIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 282 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3e-05 Score=68.32 Aligned_cols=249 Identities=10% Similarity=0.071 Sum_probs=146.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
+-+.-.|.+..++..-+..... +.+...-.-+.++|...|.+..... ++.... .|.......+......-++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 3444567777766655544322 1345555556677777776654433 332222 3444444444444444455444
Q ss_pred HHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 306 AHD-VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 306 A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
.+. +.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 33344433333333333334456778888888887776522 22333333455667778888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 385 RKGCNPNASTFNMIFRCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP 460 (534)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 460 (534)
+.. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..++++...+. .-
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 753 55666666666553 34577788888888663 36777788888888888888888888888887764 44
Q ss_pred CHHHHHHHHHHHHhCCCHHHH-HHHHHHHHH
Q 009470 461 NVNTYRILITMYCGMGHWNNA-YKYIREMIE 490 (534)
Q Consensus 461 ~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 490 (534)
+..+...+|-.-...|.-.++ .+.+.+...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 566666666555555654443 445555555
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=8e-06 Score=74.87 Aligned_cols=189 Identities=15% Similarity=0.076 Sum_probs=129.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHH
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCA-PD-KIA 220 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~ 220 (534)
......+......+.+.|+++.|...|+++...... ....++..+...+...|++++|+..++++.+.... +. ..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 446677888888899999999999999988776421 11357788889999999999999999999865321 11 124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009470 221 FSIVISILCRK--------RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSI 292 (534)
Q Consensus 221 ~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 292 (534)
+..+..++... |+.++|.+.|+.+....+.+...+..+..... .... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------HH--------HHHHH
Confidence 44445555544 67888888888887766655544433322111 0000 00 01124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEVGC--EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
+...|.+.|++++|+..+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678888999999999998887631 223567888888999999999999988887764
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=6.8e-06 Score=75.31 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK---IAFSIVISILCRKRRASEAQSFFDSLKDKF 248 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 248 (534)
....+..+...+...|++++|...|+++.+.. +.+. .++..+..++...|++++|...++++.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 44556666666666666666666666665432 1111 244455555566666666666666655443
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.65 E-value=0.00092 Score=68.81 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=156.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINL--AGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
+.+.+|+.-.+.+.++.+.. .|..++.+ +.+.|+.++|..+++.....+. .|..+...+-..|...|+.++|.
T Consensus 23 ~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 45778888888888765433 34444444 4588999999999988877763 48899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC----------CHHHHHH
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG----------NISEAER 273 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~ 273 (534)
.+|++.... -|+......+..+|++.+.+.+-.+.--++-+.++.+...+=+++..+...- -..-|.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999999874 4778888889999999988887666555555555556665555555554332 1334666
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 274 VFREMKMAG-IQPNVYTYSIVIDALCRCGQITRAHDVFA-EMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 274 ~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
.++.+.+.+ ..-+..-...-...+-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 777776654 21122222233344557889999999994 4444433445555667778888999999999999999888
Q ss_pred C
Q 009470 352 G 352 (534)
Q Consensus 352 g 352 (534)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 6
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=3.4e-05 Score=82.27 Aligned_cols=236 Identities=11% Similarity=0.107 Sum_probs=180.1
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 241 FDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA-GIQP---NVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|+++....|-....|-..+......++.++|.++.++.... ++.- -...|.++++.-..-|.-+...++|+++.+.
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 34444445666778888899999999999999999998753 1111 1345777777777778888889999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHH
Q 009470 317 GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-PNASTF 395 (534)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ 395 (534)
- -.-..|..|...|.+.+..++|.++++.|.+.- ......|...+..+.+..+-++|..++.++.+.-.+ -.....
T Consensus 1527 c--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1527 C--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred c--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 2 234467788999999999999999999998763 356788999999999999999999999998876322 134555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV--NTYRILITMYC 473 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~ 473 (534)
...+..-.+.|+.+.+..+|+.......+ -...|+.++++-.++|+.+.+..+|++....++.+.. ..|...+..=-
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 66677778899999999999998876433 5678999999999999999999999999998877654 34444444434
Q ss_pred hCCCHHH
Q 009470 474 GMGHWNN 480 (534)
Q Consensus 474 ~~g~~~~ 480 (534)
..|+-+.
T Consensus 1683 ~~Gde~~ 1689 (1710)
T KOG1070|consen 1683 SHGDEKN 1689 (1710)
T ss_pred hcCchhh
Confidence 4455433
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=5.2e-05 Score=66.87 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=146.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 191 RRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
+-+.-.|++..++..-+..... +.+...-..+.++|...|..... ...++.+-.+.......+.......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---ccccccccCChHHHHHHHHHHhhCcchhHH
Confidence 3444456666666554444322 13344444455666666654332 233333333333444444444444444444
Q ss_pred HH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 271 AE-RVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 271 A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
-+ .+.+.+......-+......-...|++.|++++|++...... +......=..++.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 334444443333333333444556788888888888776622 22222223445667778888888888888
Q ss_pred HcCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 009470 350 RLGCEADTITYNFLIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP 425 (534)
Q Consensus 350 ~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (534)
+. .+..+.+-|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++........
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 64 355666666666543 45788888888888875 4678888888888888889999999999888876543
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 009470 426 NTVTYNILMQMFATSKST-DMVLKLKKEMEEN 456 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~ 456 (534)
++.+...++-.-...|.- +...+.+.+++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 566665555544444543 4445566666553
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=6.6e-08 Score=57.64 Aligned_cols=32 Identities=41% Similarity=0.737 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 457 EVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 457 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
|+.||..+|+.+|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=1.8e-05 Score=69.85 Aligned_cols=125 Identities=13% Similarity=0.163 Sum_probs=84.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 009470 370 DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF-ATSKS--TDMV 446 (534)
Q Consensus 370 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a 446 (534)
.++.+++...++...+.+. .+...|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666666542 3667777777777777777777777777776653 2566666666653 55565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
.+++++..+.+ +-+...+..+...+.+.|++++|+..|+++++.. +|+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~--~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN--SPRVN 179 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcc
Confidence 77777777764 4456677777777777788888888887777754 44443
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=1.7e-05 Score=69.91 Aligned_cols=155 Identities=9% Similarity=0.121 Sum_probs=97.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH
Q 009470 190 VRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (534)
+..|...|+++.+....+.+.. |. ..+...++.+++...++......+.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3456667776665544433221 10 01112455566666666666666777777777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 270 EAERVFREMKMAGIQPNVYTYSIVIDA-LCRCGQ--ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 270 ~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
+|...|++..+.... +...+..+..+ +...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765432 55566666655 355565 477777777777765 3356667777777777777777777777
Q ss_pred HHHHcCCCCChhh
Q 009470 347 QMKRLGCEADTIT 359 (534)
Q Consensus 347 ~~~~~g~~~~~~~ 359 (534)
++.+.. +|+..-
T Consensus 169 ~aL~l~-~~~~~r 180 (198)
T PRK10370 169 KVLDLN-SPRVNR 180 (198)
T ss_pred HHHhhC-CCCccH
Confidence 777664 344433
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.4e-05 Score=70.46 Aligned_cols=160 Identities=14% Similarity=0.034 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (534)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...|.+....-++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 45555666667766666666664432 23455556667777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
++++|..-|.+..+.... +...++.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777777765322 44556666666777777777777777776664 3355556666667777777777777665
Q ss_pred HHH
Q 009470 347 QMK 349 (534)
Q Consensus 347 ~~~ 349 (534)
+-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 544
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=5e-05 Score=80.20 Aligned_cols=171 Identities=6% Similarity=0.053 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
+.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++..++.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 3455789999999999999999999999777664 34455666666688888887776665 3322
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 304 (534)
......++.-...+...+.. ...+..++..++.+|-+.|+.++|..+|+++.+... -|....|.+...|... +++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --hcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHH
Confidence 22222223222222222222 333455777788888888888888888888887763 3677788888888877 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
+|.+++.+.... +...+++..+.++|.++...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 888887776643 44555666666666666654
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.54 E-value=0.00018 Score=74.58 Aligned_cols=86 Identities=16% Similarity=0.000 Sum_probs=36.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.|.+.++...|+..|+...+.. +-|...|..+..+|.+.|++..|.++|.+...--|.+...-.-..-..|..|.+.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 3444444444444444444332 223344444444555555555555555444332222222222233333444444444
Q ss_pred HHHHHHH
Q 009470 272 ERVFREM 278 (534)
Q Consensus 272 ~~~~~~m 278 (534)
+..+...
T Consensus 650 ld~l~~i 656 (1238)
T KOG1127|consen 650 LDALGLI 656 (1238)
T ss_pred HHHHHHH
Confidence 4444443
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=4e-05 Score=67.59 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
..+-..+...|+-+....+........+.|....+.++....+.|++.+|...+++.... -++|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 444555556666666666666655555556666666777777777777777777776554 2446667777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
++++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777776666653 2245556666666666777777777776666554 3355556666666666677766666655
Q ss_pred HH
Q 009470 382 SM 383 (534)
Q Consensus 382 ~m 383 (534)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00018 Score=63.15 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 196 AGLAAEAVHAFNRMEE---YG-CAPDKIA-FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~---~g-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
..+.++.++++..+.. .| ..++..+ |..++-+....|+.+.|...++.+..+++.+..+-..-.-.+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3456777777777642 23 4455543 44555566677888888888888777775555544444444555777788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
|+++++.+.+.+ +.|.++|.--+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888777765 335666666666666667766777777666654 245777777777777777777777777777765
Q ss_pred cCCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHC
Q 009470 351 LGCEADTITYNFLIDCHCKDG---KLEDAIKVLNSMVRK 386 (534)
Q Consensus 351 ~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 386 (534)
.. +.+...+..+...+.-.| +.+-|.++|.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 43 344444555555443333 455566666666654
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=4e-05 Score=80.12 Aligned_cols=184 Identities=9% Similarity=0.048 Sum_probs=129.9
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 143 EFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFS 222 (534)
Q Consensus 143 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 222 (534)
.+.++++.+-.+..+..+.|.+++|..+++...+.. +.+...+..++..+.+.+++++|+..+++..... +-+.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 456778888888888888888888888888888775 4567778888888888888888888888888754 34566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 009470 223 IVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ 302 (534)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 302 (534)
.+..++.+.|++++|..+|+++....+.+..++..+...+.+.|+.++|...|++..+.. .+....|+.++ ++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 777788888888888888888877656668888888888888888888888888887642 23444554433 23
Q ss_pred HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHc
Q 009470 303 ITRAHDVFAEMLEVG----CEPNSITFNNLMRVHVKA 335 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~ 335 (534)
+..-..+++++.-.+ .+.......-+|.-+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 344445555554332 222334444455544443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=0.0001 Score=77.16 Aligned_cols=213 Identities=11% Similarity=0.082 Sum_probs=157.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKS--RNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI 227 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 227 (534)
+...+=..+.+.+.+..+..-+-++.. +..+.+...+..|.....+.|.+++|..+++...+.. +-+......+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~ 129 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRG 129 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHH
Confidence 444444555555555554444443332 2445678999999999999999999999999998853 3345677888899
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 307 (534)
+.+.+++++|+..+++.....+.+....+.+..++.+.|++++|..+|+++...+. -+..++..+...+-+.|+.++|.
T Consensus 130 L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999998888999999999999999999999999999998432 35788888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCCChhhHHHHHHHHHHcC
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG----CEADTITYNFLIDCHCKDG 371 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g 371 (534)
..|+...+.. .+....|+..+ ++...-...++.+.-.+ .+........+|..|.+..
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 209 DVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 9999998764 34555665544 23444455666654433 3333445566666565443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=7.8e-05 Score=71.50 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=108.1
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 009470 157 LAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-KIAFSIVISILCRKRRAS 235 (534)
Q Consensus 157 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~ 235 (534)
.+...|+++.|+..++.+...- +.|...+....+.+.+.|+..+|.+.++++... .|+ ....-.+..+|.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3446788888888888876653 567778888888888888888888888888774 355 555666778888888888
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 236 EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 236 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
+|+.+++......+.|...|..|.++|...|+..++.....++ |...|++++|+..+....+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 8888888888778888888888888888888888777665543 4557888888888877766
Q ss_pred cC
Q 009470 316 VG 317 (534)
Q Consensus 316 ~~ 317 (534)
..
T Consensus 454 ~~ 455 (484)
T COG4783 454 QV 455 (484)
T ss_pred hc
Confidence 53
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00017 Score=69.27 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=112.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 009470 330 RVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN-ASTFNMIFRCISKLGDV 408 (534)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~ 408 (534)
-.+...|++++|+..++.+...- +-|..........+.+.++.++|.+.++.+.... |+ ......+..++.+.|+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCCh
Confidence 34557888899999998887763 4445555566688889999999999999988874 44 56667778888999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 409 NGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
.+|++++++..... +-|...|..|.++|...|+..++..-..+ +|...|++++|+..+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 99999998887654 45888899999999999988777654443 466678999998888888
Q ss_pred HHcCCCCCCHHHH
Q 009470 489 IEEKCLKPGSSVY 501 (534)
Q Consensus 489 ~~~~~~~p~~~~~ 501 (534)
.+.. +.+...|
T Consensus 452 ~~~~--~~~~~~~ 462 (484)
T COG4783 452 SQQV--KLGFPDW 462 (484)
T ss_pred HHhc--cCCcHHH
Confidence 7764 3444333
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.42 E-value=2.8e-05 Score=64.84 Aligned_cols=95 Identities=9% Similarity=-0.121 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009470 395 FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG 474 (534)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 474 (534)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...++...+.. +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666777788888888888777665 3366777777777888888888888888887754 5566777777777888
Q ss_pred CCCHHHHHHHHHHHHHc
Q 009470 475 MGHWNNAYKYIREMIEE 491 (534)
Q Consensus 475 ~g~~~~A~~~~~~~~~~ 491 (534)
.|++++|+..|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888888774
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=3.8e-05 Score=63.99 Aligned_cols=101 Identities=8% Similarity=-0.095 Sum_probs=52.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR 232 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 232 (534)
.....+...|++++|...|+.....+ +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444555555555555555555443 3345555555555555555555555555555432 334445555555555555
Q ss_pred CHHHHHHHHHHhhccCCCCHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVY 255 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~ 255 (534)
+.++|...|+......+.+...|
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHH
Confidence 55555555555544444444444
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.0033 Score=64.94 Aligned_cols=225 Identities=11% Similarity=0.126 Sum_probs=149.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI--LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (534)
.....+++.+|++...++.+.. |+.. |..++.+ +.+.|+.++|..+++......+.|..|...+-.+|...|+.+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3446788999999988876542 4432 2233333 468899999998888877655668899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-h---------h
Q 009470 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR-T---------E 339 (534)
Q Consensus 270 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~---------~ 339 (534)
+|..+|+..... .|+......+..+|.+.+++.+-.+.--+|-+. .+-+...+-.++..+.+.-. . .
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999998765 466777777778888888877655554444443 23355555566666554321 1 2
Q ss_pred HHHHHHHHHHHcC-CCCChhhHHHHHHHHHHcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009470 340 KVLQVYNQMKRLG-CEADTITYNFLIDCHCKDGKLEDAIKVL-NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417 (534)
Q Consensus 340 ~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (534)
-|.+.++.+.+.+ -..+..-.-.-...+-..|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566655443 1111111222223345678899999988 4444444444555556777888888999998888888
Q ss_pred HHhCC
Q 009470 418 MKDLK 422 (534)
Q Consensus 418 m~~~~ 422 (534)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88876
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=6.6e-05 Score=62.01 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
....+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...++......+.+...+..+...+..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33444444444555555555554444432 22344444444444444555555555544444334444444444455555
Q ss_pred cCCHHHHHHHHHHHHH
Q 009470 265 AGNISEAERVFREMKM 280 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~ 280 (534)
.|++++|.+.|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0005 Score=60.41 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=107.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
+|..++-+....|+.+.|...++.+..+- +-+..+-..-...+-..|++++|+++++.+.+.+ +.|..++..-+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 55666666667778888888887777663 4344444444444556677888888888777655 455666666666666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG---QITRA 306 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A 306 (534)
..|+--+|++-+....+.+..|...|.-+...|...|+++.|.-.++++.-... -+...+..+.+.+.-.| +++-+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP-FNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 677777777777777777777788888888888888888888777777765421 13334444444444433 45556
Q ss_pred HHHHHHHHHc
Q 009470 307 HDVFAEMLEV 316 (534)
Q Consensus 307 ~~~~~~m~~~ 316 (534)
.++|.+..+.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.25 E-value=6.4e-05 Score=62.07 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
.....+...+...|++++|.+.|+.+....+.+...|..+...+.+.|++++|..++++..+.+ +.+...+..+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 4455556666677777777777777666556667777777777777777777777777766553 224555666666777
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 009470 299 RCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~ 316 (534)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776665
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=7.3e-05 Score=72.38 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (534)
..++..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+.....+.+......-+..+.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 334444444555555666655555432 33 22234455555555555555555555544555555555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 267 NISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
+++.|+++.+++.+. .| +..+|..|..+|.+.|++++|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666665553 22 33456666666666666666665555544
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.18 E-value=0.0083 Score=58.62 Aligned_cols=396 Identities=12% Similarity=0.146 Sum_probs=222.1
Q ss_pred HHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009470 110 STVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSIL 189 (534)
Q Consensus 110 ~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 189 (534)
..+..+++.. +..+++++..+++.+.. .|+.++..|..-|....+.++++....+|.+....- .+.+.|..-
T Consensus 21 ~sw~~lire~----qt~~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 21 DSWSQLIREA----QTQPIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred HHHHHHHHHH----ccCCHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 3445555543 23478899999998875 477888999999999999999999999999988763 356777777
Q ss_pred HHHHHHc-CCH----HHHHHHHHHH-HHcCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHhhccCCC---
Q 009470 190 VRRYVRA-GLA----AEAVHAFNRM-EEYGCAPD-KIAFSIVISI---------LCRKRRASEAQSFFDSLKDKFEP--- 250 (534)
Q Consensus 190 i~~~~~~-g~~----~~A~~~~~~m-~~~g~~~~-~~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~~~~--- 250 (534)
+..-.+. |+. +...+.|+-. .+.|+.+- -..|+..+.. +....+++...+++.++...--.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6644432 222 2333444443 34454332 2334444432 23344566666677665432000
Q ss_pred ----CHHHHHHHHHH-----H--HhcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHH-------
Q 009470 251 ----DVIVYTNLVRG-----W--CRAGNISEAERVFREMKM--AGIQPNVYT---------------YSIVID------- 295 (534)
Q Consensus 251 ----~~~~~~~li~~-----~--~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~ll~------- 295 (534)
|-..|..=|.. + -+...+..|.++++++.. .|...+..+ |..+|.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11111111111 1 112234455555555432 121111100 111110
Q ss_pred ---------------------H--------------HHHcCC--------------HHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 296 ---------------------A--------------LCRCGQ--------------ITRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 296 ---------------------~--------------~~~~g~--------------~~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
. +...++ -+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111 233333333333222122233333
Q ss_pred HHHHHHHHcC---ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 009470 327 NLMRVHVKAS---RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP-NASTFNMIFRCI 402 (534)
Q Consensus 327 ~li~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~ 402 (534)
.+...--..- ..+.....++++...-...-..+|..+++.-.+..-+..|..+|.++.+.+..+ ++.++++++..+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3222111111 244455555555544323334567777777778888888888888888876665 677777788776
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHH
Q 009470 403 SKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV--NTYRILITMYCGMGHWNN 480 (534)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 480 (534)
| .++.+-|.++|+--...- .-++.--...+.-+...++-..+..+|+.....++.++. ..|..++.-=..-|+...
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 467788888887654431 223444456677777788888888888888877655553 678888887788888888
Q ss_pred HHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHH
Q 009470 481 AYKYIREMIEEKC--LKPGSSVYEMVLQQLRRAGQLQ 515 (534)
Q Consensus 481 A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 515 (534)
++++-+++..... ..+....-..+++-|.-.+...
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 8888888777542 2233344455555555544443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00025 Score=59.26 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=8.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009470 260 RGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~ 280 (534)
..+...|++++|...|+....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333333444444444444333
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00018 Score=69.74 Aligned_cols=120 Identities=16% Similarity=0.279 Sum_probs=58.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS 442 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 442 (534)
|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..... +-+...+..-.+.+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3344444455555555555555542 22 22334444444555555555555554332 2234444444444555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
++.|..+.+++.+.. +-+..+|..|..+|.+.|++++|+-.++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555531 223345555555555555555555554433
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00026 Score=59.18 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=55.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHH
Q 009470 405 LGDVNGAHRMYGKMKDLKCEPN---TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV--NTYRILITMYCGMGHWN 479 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 479 (534)
.++...+.+.++.+.+.... + ....-.+...+...|++++|...|+...+....++. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555555555543211 1 112222334555556666666666665554311111 12333445555666666
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 480 NAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 480 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
+|+..++..... ......+....+++.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666543221 22333455555666666666666666554
No 143
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.014 Score=58.62 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHHcCC
Q 009470 128 LLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR-NVEI--------TVDTFSILVRRYVRAGL 198 (534)
Q Consensus 128 ~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~ 198 (534)
+++|.+|.+ + .|.+..|..+.+...+.-.++.|...|-+...- |++. +...-.+=+.+ --|.
T Consensus 679 ledA~qfiE----d---nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIE----D---NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGE 749 (1189)
T ss_pred hHHHHHHHh----c---CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcc
Confidence 556666654 2 357889999999999989999999888776543 3321 11111122222 2488
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK--FEPDVIVYTNLVRGWCRAGNISEAERVFR 276 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 276 (534)
+++|.++|-+|.++. ..+..+.+.|++-...++++.-..+ ...-..+|+.+...+.....|++|.+.|.
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988776543 3455566677776666665542211 11123556667666666666776666665
Q ss_pred H
Q 009470 277 E 277 (534)
Q Consensus 277 ~ 277 (534)
.
T Consensus 821 ~ 821 (1189)
T KOG2041|consen 821 Y 821 (1189)
T ss_pred h
Confidence 4
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=8.4e-06 Score=49.18 Aligned_cols=33 Identities=42% Similarity=0.895 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.96 E-value=1.7e-05 Score=47.85 Aligned_cols=33 Identities=36% Similarity=0.602 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD 217 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 217 (534)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.9e-05 Score=47.29 Aligned_cols=33 Identities=33% Similarity=0.610 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP 216 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 216 (534)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777778888888888888888777777765
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2e-05 Score=47.16 Aligned_cols=32 Identities=38% Similarity=0.704 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.89 E-value=0.00029 Score=68.63 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009470 213 GCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK---FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYT 289 (534)
Q Consensus 213 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 289 (534)
+.+.+......+++.+....+++.+..++.+.... ...-..|..++++.|.+.|..++++.+++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777788888887777643 222234556889999999999999999988888899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA 335 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 335 (534)
+|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888777666777777777766665
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.004 Score=58.75 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=112.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-KIAFSIVISILCRKR 232 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g 232 (534)
....+.+..++..|+..+....+.. +.+...|..-...+...|++++|.--.+.-.+. ++. .......-+++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhH
Confidence 3445556666666666666666554 334555555555666666666665555444332 111 112222333333333
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI-QPNVYTYSIV-IDALCRCGQITRAHDVF 310 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l-l~~~~~~g~~~~A~~~~ 310 (534)
+..+|.+.++ +...| ....|+..++....... +|...++..+ ..++.-.|++++|...-
T Consensus 132 ~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 132 DLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 3333433333 11111 11222222333322221 1333333333 24455677888887777
Q ss_pred HHHHHcCCCCCHHHHHHHHH--HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH-------------HHHHcCChHH
Q 009470 311 AEMLEVGCEPNSITFNNLMR--VHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID-------------CHCKDGKLED 375 (534)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~-------------~~~~~g~~~~ 375 (534)
-..++.. ....+...++ ++.-.++.+.+..-|++.+..+ |+...-..+-. -..+.|++.+
T Consensus 193 ~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 193 IDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 7666553 1222333333 3334667777777777777653 44333222111 1134455555
Q ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 376 AIKVLNSMVRK---GCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 376 A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
|.+.|.+.+.. +..++...|........+.|+.++|+.--++..+
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 55555555543 2233444444444455555555555555554443
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.85 E-value=0.00025 Score=68.99 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=101.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009470 317 GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL--GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394 (534)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 394 (534)
+.+.+...+..+++.+....+.+.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667778888888888888888899988888765 2333455667999999999999999999999889999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009470 395 FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS 440 (534)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (534)
+|.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888777666777777666666655
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.85 E-value=0.00038 Score=52.73 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=38.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (534)
+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.++......+.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3444444444555554444444322 112233334444444444444444444444333333334444444444444444
Q ss_pred HHHHHHHHHH
Q 009470 269 SEAERVFREM 278 (534)
Q Consensus 269 ~~A~~~~~~m 278 (534)
++|...+.+.
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00038 Score=52.73 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 009470 431 NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR 510 (534)
Q Consensus 431 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 510 (534)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHH
Confidence 334445555566666666666555432 2233445555555555666666666666655543 2233455555556666
Q ss_pred cCCHHHHHHHHHHHHH
Q 009470 511 AGQLQKHEELVEKMVD 526 (534)
Q Consensus 511 ~g~~~~a~~~~~~~~~ 526 (534)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655544
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.01 Score=54.18 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDT---FSILVRRYVRAGLAAEAVHAFNRMEEY 212 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (534)
++..+......+.+.|++++|.+.|+.+..... -+... .-.++.++.+.|++++|+..+++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344444455555667888888888888776532 22222 245566777788888888888887764
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00093 Score=53.49 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=7.7
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 009470 190 VRRYVRAGLAAEAVHAFNRM 209 (534)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m 209 (534)
+..+.+.|++++|.+.|+++
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAF 28 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00072 Score=54.17 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNV--EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC--APDKIAFSIV 224 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l 224 (534)
+++......+.+.|++++|.+.|+.+..... +.....+..+...+.+.|++++|++.|+.+..... ......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4667778888899999999999999887642 12245677788999999999999999999876431 1124567777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
..++.+.|+.++|.+.++++....+.+..+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 778888899999999988888776666655544
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00046 Score=64.63 Aligned_cols=131 Identities=8% Similarity=0.049 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK-LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQM 436 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 436 (534)
.+|..+++..-+.+..+.|..+|.++.+.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777776432 2233344433333222 34555577777766553 23456666666676
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNV---NTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+...|+.+.|..+|+..... +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654 22222 36666666666667777777777666663
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.79 E-value=0.0048 Score=58.04 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLM 174 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m 174 (534)
+.|......|-..|++++|.+.|.+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHH
Confidence 35555556666666666666666553
No 158
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.047 Score=55.66 Aligned_cols=358 Identities=13% Similarity=0.147 Sum_probs=203.4
Q ss_pred CCCHHHHHHHHHHH------HccCChHHHHHHHHHHH--------hCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHH
Q 009470 145 VHSPDLYHEMINLA------GKVRQFDLAWHFIDLMK--------SRNVEITVDTFS-----ILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 145 ~~~~~~~~~li~~~------~~~~~~~~A~~~~~~m~--------~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~ 205 (534)
...|+....|+++. .+..++++-.++..+++ ..|++.+..-|. .++..+...+.+..|+++
T Consensus 380 ef~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQv 459 (829)
T KOG2280|consen 380 EFQPEEQKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQV 459 (829)
T ss_pred ccCHHHHHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHH
Confidence 34455555555432 34456666655554432 347777766664 567778888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRR---ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
-..+...-..- ..+|.....-+.+..+ .+.+..+-+++.... -....|..+++-...+|+.+-|.++++.=...+
T Consensus 460 a~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~ 537 (829)
T KOG2280|consen 460 AKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSG 537 (829)
T ss_pred HHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCcc
Confidence 88775322222 5677777777776632 222333333333321 356778888998999999999988876422221
Q ss_pred CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHH--------HHHHcCChh
Q 009470 283 IQ----PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG-----------CEPNSITFNNLMR--------VHVKASRTE 339 (534)
Q Consensus 283 ~~----p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~~~~~li~--------~~~~~g~~~ 339 (534)
.. .+..-+...+.-..+.|+.+-...++-.+.+.- .+.....|.-+++ .+.+.++-.
T Consensus 538 ~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~ 617 (829)
T KOG2280|consen 538 EQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH 617 (829)
T ss_pred chhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccch
Confidence 11 112223444555566777776666665554321 0111111211111 001111111
Q ss_pred HHHHHH--HHHHHcC-CCCChhhHHHHHHHHHHcCChH---HH-------HHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 009470 340 KVLQVY--NQMKRLG-CEADTITYNFLIDCHCKDGKLE---DA-------IKVLNSMVRK-GCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 340 ~a~~~~--~~~~~~g-~~~~~~~~~~li~~~~~~g~~~---~A-------~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~ 405 (534)
++..-| +...... +.+-........+.+.+..... +| +++.+.+... |......+.+--+.-+...
T Consensus 618 ~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~ 697 (829)
T KOG2280|consen 618 QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILI 697 (829)
T ss_pred hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHc
Confidence 111111 1100000 0111112223333444433311 11 1122222221 3333444556666667788
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
|+..+|.++-.+.+ .||...|..-+.+++..+++++-+++-+.+.. ..-|.-++.+|.+.|+.+||.+++
T Consensus 698 g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 698 GQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred cchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhh
Confidence 99999999888776 58999999999999999999988777665542 345778889999999999999988
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 486 REMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
-+.-. . ...+.+|.+.|++.+|.++.-+-
T Consensus 768 prv~~---l-------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 768 PRVGG---L-------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccCC---h-------HHHHHHHHHhccHHHHHHHHHHh
Confidence 65422 1 15678888889999888765543
No 159
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.78 E-value=0.00048 Score=52.61 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGI-QPNVYTYSIVIDALCRCG--------QITRAHDVFAEMLEVGCEPNSITFNN 327 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (534)
..|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|++|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777777666542 23345566666666666666666666
Q ss_pred HHHHHHH
Q 009470 328 LMRVHVK 334 (534)
Q Consensus 328 li~~~~~ 334 (534)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.0011 Score=64.35 Aligned_cols=89 Identities=13% Similarity=-0.009 Sum_probs=53.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
..+...|++++|++.|+++++... -+...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 334455666666666666665442 245555566666666666666666666666542 334555666666666666666
Q ss_pred HHHHHHHHHHH
Q 009470 480 NAYKYIREMIE 490 (534)
Q Consensus 480 ~A~~~~~~~~~ 490 (534)
+|+..|+++++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666666
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00051 Score=62.07 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=57.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
+.+.+++++|+..|.+.++.... |.+.|..-..+|++.|.++.|++--+..+..+. -...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHH
Confidence 55566666666666666665422 555556666666666666666666666555431 1345566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q 009470 447 LKLKKEMEENEVEPNVNTYR 466 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~ 466 (534)
++.|++..+ +.|+..+|.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666655 355555443
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.001 Score=62.35 Aligned_cols=128 Identities=9% Similarity=0.130 Sum_probs=51.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR-AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
|-.++....+.+..+.|+.+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 3334444444444445555554444322 1222333333222112 33333344444444332 2334444444444444
Q ss_pred hcCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDV---IVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+.|+.+.|..+|++.....+.+. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444443322222 3444444444444444444444444443
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.0011 Score=57.06 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP--DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
...|..+...+...|++++|+..|++.......+ ...++..+...+...|+.++|++.+++.....+.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3455556666666666666666666665432111 12355556666666666666666666655444444444555554
Q ss_pred HHH-------hcCCHHHHHHHHH
Q 009470 261 GWC-------RAGNISEAERVFR 276 (534)
Q Consensus 261 ~~~-------~~g~~~~A~~~~~ 276 (534)
.+. +.|++++|+..++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 4455554444333
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.69 E-value=0.00085 Score=51.30 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=36.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcC--------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLGC-EADTITYNFLIDCHCKDG--------KLEDAIKVLNSMVRKGCNPNASTFNMIF 399 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 399 (534)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555544332 1223344445555555555555555555
Q ss_pred HHH
Q 009470 400 RCI 402 (534)
Q Consensus 400 ~~~ 402 (534)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 444
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.4e-05 Score=44.09 Aligned_cols=29 Identities=41% Similarity=0.886 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.011 Score=53.92 Aligned_cols=54 Identities=7% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVY---TNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
+...|++++|.+.|+.+....|-+.... -.++.++.+.+++++|...+++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445555555555555555444333332 23445555556666666666555554
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.65 E-value=0.002 Score=53.18 Aligned_cols=99 Identities=9% Similarity=-0.009 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 392 ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
....-.+...+...|++++|.++|+.+..... -+..-|-.|.-++-..|++++|+..+....... +-|...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34444555667788888888888888776543 356667777777778888888888888887765 4567777778888
Q ss_pred HHhCCCHHHHHHHHHHHHHcC
Q 009470 472 YCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+...|+.+.|.+.|+.++...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 888888888888888887754
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0042 Score=53.59 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD--KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
.+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 444455555555555555555555543321111 234445555555555555555555555444444455555555555
Q ss_pred HhcCCHHHHH
Q 009470 263 CRAGNISEAE 272 (534)
Q Consensus 263 ~~~g~~~~A~ 272 (534)
...|+...+.
T Consensus 117 ~~~g~~~~a~ 126 (172)
T PRK02603 117 HKRGEKAEEA 126 (172)
T ss_pred HHcCChHhHh
Confidence 5555544333
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=0.00017 Score=53.83 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 440 SKSTDMVLKLKKEMEENEVE-PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHE 518 (534)
Q Consensus 440 ~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 518 (534)
.|+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|+.++++ .+.+ ..+......+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666654211 1333444456666666666666666665 2211 112233334456666666666666
Q ss_pred HHHHH
Q 009470 519 ELVEK 523 (534)
Q Consensus 519 ~~~~~ 523 (534)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 170
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=6.7e-05 Score=43.69 Aligned_cols=29 Identities=45% Similarity=0.773 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666666554
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=0.00018 Score=53.69 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=6.4
Q ss_pred HHHHHhcCCHHHHHHHH
Q 009470 259 VRGWCRAGNISEAERVF 275 (534)
Q Consensus 259 i~~~~~~g~~~~A~~~~ 275 (534)
..++.+.|++++|++++
T Consensus 65 a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33344444444444433
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.59 E-value=0.0055 Score=50.61 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF 437 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (534)
...-.+..-+...|++++|.++|+.+...++. +..-|..|..++...|++++|+..|.......+ -|+..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 34444555567778888888888877776533 556666777777778888888888887777663 4677777777778
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009470 438 ATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~m~~ 455 (534)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888887776655
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.58 E-value=0.07 Score=50.29 Aligned_cols=286 Identities=13% Similarity=0.086 Sum_probs=166.5
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG--WCRAGNISEAERVFREMKMAGIQPNVYT--YSIVIDALCRCGQITR 305 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~ 305 (534)
..|+-..|.++-.+-...+..|....-.++.+ -.-.|+++.|.+-|+.|.+. |.... ...|.-.-.+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35666667666665544444454444444433 34467888888888888752 22211 1122222345677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCChhh--HHHHHHHHH---HcCChHHHHHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG-CEADTIT--YNFLIDCHC---KDGKLEDAIKV 379 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~--~~~li~~~~---~~g~~~~A~~~ 379 (534)
|..+-++.-... +--.-.+...+...|..|+|+.|+++++.-.... +.++..- -..|+.+-. -.-+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 777777665543 2234456677777788888888888887655432 2233211 112222211 12345556665
Q ss_pred HHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 009470 380 LNSMVRKGCNPNAST-FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN-E 457 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~ 457 (534)
-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+... .+..+... .+.+.|+. ++.-++..... .
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~ia~lY--~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDIALLY--VRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHHHHHH--HHhcCCCc--HHHHHHHHHHHHh
Confidence 5555554 344322 22345677888888899899988887654 44333322 23344543 33333332210 1
Q ss_pred C-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC
Q 009470 458 V-EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA-GQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 458 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~ 530 (534)
+ +.+......+..+-...|++..|..--+...+ ..|....|..|.+.-... |+-.++..++.+.++.--.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 2 33556677777888888888888877777766 468888888888776554 8888888888887765333
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.0067 Score=48.23 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=66.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPD--KIAFSIVISILCRKRRASEAQSFFDSLKDKFEP---DVIVYTNLVRGWC 263 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~ 263 (534)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++....++. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566677888888888888777765443 234555666777778888888888776665444 3344444555667
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDAL 297 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (534)
..|+.++|+.++-..... +...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 777888777777665432 333444444444
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0056 Score=52.84 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009470 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM 434 (534)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (534)
...+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+... -+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34456666666777777777777777765432221 34566666666777777777777776665431 2344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQ 513 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 513 (534)
..+...|+...+..-++... +.+++|.++++++.+. .|+. |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~---~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRL---APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhh---Cchh--HHHHHHHHHhcCc
Confidence 56666665554443332221 1256777777777663 3443 4445554444443
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.081 Score=50.25 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
.+.+..+.-+...|+...|.++-.+.. .||...|...+.+++..+++++-.++... +. .+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHH
Confidence 345556677788899988888877664 58999999999999999999988776542 21 336788999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVE 522 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 522 (534)
.+.|+..+|..++.++ + +..-+..|.+.|++.+|.+..-
T Consensus 248 ~~~~~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999888762 1 2345667778888888766543
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0029 Score=61.53 Aligned_cols=90 Identities=8% Similarity=-0.057 Sum_probs=52.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 191 RRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
..+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..++++....+.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445566666666666665543 23445555555566666666666666666555555555566666666666666666
Q ss_pred HHHHHHHHHHC
Q 009470 271 AERVFREMKMA 281 (534)
Q Consensus 271 A~~~~~~m~~~ 281 (534)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666553
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.027 Score=53.02 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=79.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCA---PD--KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~---~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
....|...|++++|.+.|.+..+.... +. ...|......| +.+++++|.+.+ ...+..|.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~--------------~~A~~~y~ 105 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY--------------EKAIEIYR 105 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH--------------HHHHHHHH
Confidence 455666677777777777665321100 00 01122222222 222444444333 33344555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcC
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC-GQITRAHDVFAEMLEV----GCEP--NSITFNNLMRVHVKAS 336 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g 336 (534)
..|++..|-+.+.++- ..|-.. |++++|++.|++..+. | .+ -...+..+...+.+.|
T Consensus 106 ~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred hcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 6666666555554443 234444 6777777777665432 2 11 1233445566677777
Q ss_pred ChhHHHHHHHHHHHcCCCC-----Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 337 RTEKVLQVYNQMKRLGCEA-----DT-ITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~-----~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
++++|.++|+++....... +. ..|-..+-++...||...|.+.+++....
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777777765542211 11 11222333555566777777777766654
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.057 Score=54.54 Aligned_cols=75 Identities=11% Similarity=0.025 Sum_probs=44.2
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC--APDKIAFSIVISILCRKRRASE 236 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~ 236 (534)
+--|+|++|.++|-+|..++. .|..+.+.|+|-...++++.--. +. .--..+++.+...+.....+++
T Consensus 745 ~~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334889999999988777654 56666777777766666543110 10 0112345555555555555666
Q ss_pred HHHHHHH
Q 009470 237 AQSFFDS 243 (534)
Q Consensus 237 A~~~~~~ 243 (534)
|.+.|..
T Consensus 815 A~~yY~~ 821 (1189)
T KOG2041|consen 815 AAKYYSY 821 (1189)
T ss_pred HHHHHHh
Confidence 6555543
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.0049 Score=55.89 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=70.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 191 RRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
.-+.+.+++++|++.|.+..+.. +-|.+-|..-..+|++.|.++.|++-.+....-.+....+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567778888888888877753 45666677777788888888888777777666555566777888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSI 292 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ 292 (534)
|++.|++..+ +.|+-.+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 8888777765 3566555543
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.50 E-value=0.041 Score=55.03 Aligned_cols=202 Identities=14% Similarity=0.164 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHHcCChhHHHHH
Q 009470 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFN-----NLMRVHVKASRTEKVLQV 344 (534)
Q Consensus 270 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~ 344 (534)
+...-++++++.|-.|+... +...++-.|++.||.++|.+--..+- -...|+ -...-+...|..++-..+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 33444566666666666543 33445556666666666654221100 000010 012223333333333333
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 345 YNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN------SMVRKGC---NPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 345 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
.++-.+. .-+..--.+....+...|+.++|..+.- -+.+-+. ..+..+...+...+.+...+..|.++|
T Consensus 693 ~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF 770 (1081)
T KOG1538|consen 693 IRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIF 770 (1081)
T ss_pred HHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHH
Confidence 3222111 1111111223344455666666655432 1111111 224445555556666677777788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhCCCHHHHHHH
Q 009470 416 GKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVN-----------TYRILITMYCGMGHWNNAYKY 484 (534)
Q Consensus 416 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~A~~~ 484 (534)
..|-+. ..+++.....+++++|..+-+...+. .+|.. -|.-.-.+|-+.|+-.||.++
T Consensus 771 ~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~v 839 (1081)
T KOG1538|consen 771 LKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQV 839 (1081)
T ss_pred HHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHH
Confidence 877531 35677778888888888887766543 33321 112223456666666666666
Q ss_pred HHHHH
Q 009470 485 IREMI 489 (534)
Q Consensus 485 ~~~~~ 489 (534)
++++.
T Consensus 840 LeQLt 844 (1081)
T KOG1538|consen 840 LEQLT 844 (1081)
T ss_pred HHHhh
Confidence 66654
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.012 Score=60.05 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 009470 425 PNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVY 501 (534)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 501 (534)
.+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++... .|...+|
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L---~P~~pt~ 489 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL---RPGENTL 489 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCchH
Confidence 355667766666666788888888888888763 57778888888888888888888888888874 4544443
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.045 Score=46.09 Aligned_cols=155 Identities=8% Similarity=0.042 Sum_probs=102.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009470 330 RVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVN 409 (534)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 409 (534)
.+..+.=+.+...+-..+-. ...|+...-..|..++.+.|+..+|...|++....-+.-|....-.+.++....++..
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 33344444444433322222 2356777777788888888888888888888776655567777777888888888888
Q ss_pred HHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009470 410 GAHRMYGKMKDLK---CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIR 486 (534)
Q Consensus 410 ~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 486 (534)
.|...++++.+.. -.|| +.-.+.+.+...|++.+|..-|+..... -|+...-......+.+.|+.++|..-+.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 8888888777643 1233 3445677788888888888888888775 5555554445556677777777665555
Q ss_pred HHHH
Q 009470 487 EMIE 490 (534)
Q Consensus 487 ~~~~ 490 (534)
++.+
T Consensus 218 ~v~d 221 (251)
T COG4700 218 AVVD 221 (251)
T ss_pred HHHH
Confidence 5544
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.48 E-value=0.003 Score=54.68 Aligned_cols=104 Identities=21% Similarity=0.329 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009470 319 EPNSITFNNLMRVHVK-----ASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS 393 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 393 (534)
..+..+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 3456666666666654 34555666666677777777777777777766543 2211 1111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (534)
+-.+..- .-.+-+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 108 -fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 -FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1111110 11223445666666666666666666666666654443
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0028 Score=54.82 Aligned_cols=105 Identities=18% Similarity=0.314 Sum_probs=65.3
Q ss_pred CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 009470 354 EADTITYNFLIDCHCKD-----GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428 (534)
Q Consensus 354 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (534)
..+..+|..+++.|.+. |.++=....+..|.+-|+.-|..+|+.|++.+-+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 45566666666666533 4555555666666666666666666666665543 2221 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 429 TYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 429 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
.- .-.+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00 123456789999999999999999999999999977664
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.014 Score=55.15 Aligned_cols=260 Identities=10% Similarity=0.052 Sum_probs=152.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 304 (534)
..+.+..++.+|+..+....+-++.+..-|..-+..+...|++++|.--.+.-++. ++. ...+.-.-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 46677778888888888887777778778888888888888888887666555443 222 224444555556666666
Q ss_pred HHHHHHHHHHHc---C-------------CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009470 305 RAHDVFAEMLEV---G-------------CEPNSITFNNL-MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCH 367 (534)
Q Consensus 305 ~A~~~~~~m~~~---~-------------~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 367 (534)
+|.+.++.-... + -+|.-.++..+ ..++.-.|+.++|..+--...+.. ..+......-..++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccc
Confidence 776666633210 0 01112222222 134555677777777666666543 22222222222344
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHH---H----------HHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNM---I----------FRCISKLGDVNGAHRMYGKMKDLK---CEPNTVTYN 431 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---l----------~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 431 (534)
.-.++.+.|...|++..+.+ |+...-.. . ..-..+.|.+..|.+.|.+.+... ..++...|.
T Consensus 214 yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 55677788888888777764 33222111 1 112346777888888888776532 344555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 432 ILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 432 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
....+..+.|+..+|+.--++..+.. +. ...|..-..++...++|++|.+.++++.+..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666777788888887777766531 11 1122222334445677888888888777743
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.0028 Score=59.64 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHH
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMK----RLGCE-ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GC-NPNAS 393 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~ 393 (534)
.|..+.+.|.-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555667777665544321 22211 12345666677777777777777766654322 21 12233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKD----LK-CEPNTVTYNILMQMFATSKSTDMVLKLKKEM 453 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 453 (534)
....+...|.-..++++|+..+.+-.. .+ ..-....|.+|..+|...|..++|+.+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 445566666666667777766654321 11 1123456667777777777777776655443
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0066 Score=52.17 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP--NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 329 (534)
...|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|++.++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445666666666777777777777765542221 12356666666777777777777777666542 22334444444
Q ss_pred HHHH
Q 009470 330 RVHV 333 (534)
Q Consensus 330 ~~~~ 333 (534)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.37 E-value=0.051 Score=48.24 Aligned_cols=169 Identities=13% Similarity=0.178 Sum_probs=86.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLG--CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL- 405 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~- 405 (534)
...+...|++++|.+.|+.+.... -+--....-.++.++.+.|++++|...+++.++.-..-...-+...+.+.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 334455666666666666665542 11112334445566666666666666666666542211111122222222111
Q ss_pred ------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 406 ------------GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 406 ------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
+...+|.. .+..++.-|=...-..+|...+..+.+. .- ..--.+...|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHH
Confidence 11122222 3344455555555666666655555432 00 11123566789
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 009470 474 GMGHWNNAYKYIREMIEEKCLKPGS----SVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~ 519 (534)
+.|.+..|..-++.+++.. |+. .....++.++.+.|..+.+..
T Consensus 153 ~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999975 433 344667788899998875543
No 190
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.34 E-value=0.17 Score=48.79 Aligned_cols=96 Identities=8% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 009470 167 AWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 167 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 246 (534)
-+++=+++++. +.|+.+|-.||..+...|..++..+++++|..- .+--..+|..-+.+-...+++...+.+|.+-..
T Consensus 28 ~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 33555555554 678999999999999999999999999999753 344456777777777777889999999987554
Q ss_pred cCCCCHHHHHHHHHHHHhcC
Q 009470 247 KFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g 266 (534)
+ ..+...|...+..--+.+
T Consensus 105 k-~l~ldLW~lYl~YIRr~n 123 (660)
T COG5107 105 K-SLNLDLWMLYLEYIRRVN 123 (660)
T ss_pred h-hccHhHHHHHHHHHHhhC
Confidence 3 224667777666554443
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.11 Score=46.48 Aligned_cols=141 Identities=11% Similarity=0.151 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM---- 434 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li---- 434 (534)
+.+.++.++...|.+.-...++.+.++...+.++.....+++.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666677777777777777776656677777777777777777777777777665433333433333332
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 009470 435 -QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEM 503 (534)
Q Consensus 435 -~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 503 (534)
..|.-.+++..|...+.+....+ +-|....|.-.-+..-.|+..+|++.++.|++. .|...+-+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ---DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc---CCccchhhh
Confidence 23445566777777777666543 334444444333444467777788887777763 455544443
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.018 Score=58.59 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 322 SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444556666666666655553 35555555556666666666666666655554
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.11 Score=46.32 Aligned_cols=130 Identities=13% Similarity=0.201 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH-----H
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLI-----D 365 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~ 365 (534)
+.++..+.-.|.+.-.+..+.+.++...+.+......+.+.-.+.||.+.|...|++..+..-..|..+.+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34445555556666666677777666555566666777777777777777777777665443233333333332 2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
.|.-.+++.+|...++++...+.. +....|.-.-+....|+..+|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455666666666666555422 4444444444455556666666666666654
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.31 E-value=0.0057 Score=57.64 Aligned_cols=263 Identities=16% Similarity=0.140 Sum_probs=120.5
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH--HHHC--CC-CCCHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPD----VIVYTNLVRGWCRAGNISEAERVFRE--MKMA--GI-QPNVYTYSIVIDAL 297 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~--g~-~p~~~~~~~ll~~~ 297 (534)
-+|+.|+......+|+...+-...| ..+|..|..+|.-.+++++|+++... .... |- .-...+...|...+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 4677888888888887765532223 23455666666666777777765421 1110 10 01223333444555
Q ss_pred HHcCCHHHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHHcCCh--------------------hHHHHHHHHHH---
Q 009470 298 CRCGQITRAHDVFAE----MLEVGCE-PNSITFNNLMRVHVKASRT--------------------EKVLQVYNQMK--- 349 (534)
Q Consensus 298 ~~~g~~~~A~~~~~~----m~~~~~~-~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~--- 349 (534)
--.|.+++|+-...+ ..+.|-. .....+..+...|...|+- +.|.+.|.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556677776654332 2222211 1233444455666555431 22233332211
Q ss_pred -HcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH---
Q 009470 350 -RLGC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMVR----KGCN-PNASTFNMIFRCISKLGDVNGAHRMYGKMK--- 419 (534)
Q Consensus 350 -~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--- 419 (534)
+.|- -.....|..|.+.|.-.|++++|+...+.-.. -|-+ .....+..+..++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1110 01123344555555555566666554443221 1211 112344555555555666666666555432
Q ss_pred -hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 420 -DLKCE-PNTVTYNILMQMFATSKSTDMVLKLKKEMEE----NE-VEPNVNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 420 -~~~~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
+.|-+ .....+.+|...|.-..++++|+..+.+-.. .+ ..-....+..|..++...|..++|+.+.+...
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22211 1223344455555555555555555433211 00 11233445555555555555555555544443
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.034 Score=49.39 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRN--VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY 212 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (534)
...-.....+...|++++|...|+.+.... .+-.....-.++.++.+.|++++|...+++..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555566777777777777777652 1223455666777777777777777777776653
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.29 E-value=0.084 Score=44.52 Aligned_cols=134 Identities=11% Similarity=0.041 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHH
Q 009470 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC-NPNASTFNM 397 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 397 (534)
.|++..-..+..++.+.|+..+|...|.+...--+.-|......+.++....+++.+|...++++.+... .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5666666677777788888888888888777655566777777777788888888888888887776531 012234455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
+.+.+...|++.+|+.-|+..... .|+...-......+.+.|+.+++..-+.++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777888888888888887764 4555555555566777787776665444443
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.0011 Score=47.05 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.|++++|++.|+++....|.+..++..++.+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.002 Score=45.77 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 009470 462 VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG-QLQKHEELVEKMVD 526 (534)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 526 (534)
...|..+...+...|++++|+..|++.++.. +.+...|..+..++.+.| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666643 234455666666666666 56666666666654
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.20 E-value=0.017 Score=45.96 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=61.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPN--TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN----VNTYRILITM 471 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~----~~~~~~li~~ 471 (534)
+..++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++.... .|+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 45566678888888888888888775543 335556667778888888888888887764 233 2222223346
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 009470 472 YCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~ 490 (534)
+...|+.++|++.+-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6777888888887766554
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.16 E-value=0.0021 Score=45.09 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+...|++++|.+.++++.+.. +-+...+..+..++.+.|++++|..+|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555442 22344444444455555555555555555544
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.15 E-value=0.041 Score=55.05 Aligned_cols=217 Identities=11% Similarity=0.167 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH-----HH
Q 009470 291 SIVIDALCRCGQ--ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYN-----FL 363 (534)
Q Consensus 291 ~~ll~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-----~l 363 (534)
+..-++|.+-.+ +-+.+.-+++|.+.|-.|+.... ...++-.|++.+|-++|.+--..+ --...|+ -+
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~ 676 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDY 676 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHH
Confidence 333444444333 34455567788888877876543 334455666777766665432110 0001111 12
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH------HHhCCC---CCCHHHHHH
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRK--GCNPNASTFNMIFRCISKLGDVNGAHRMYGK------MKDLKC---EPNTVTYNI 432 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------m~~~~~---~p~~~~~~~ 432 (534)
.+-+...|..++-..+.++-.+- +++. -.+....+...|+.++|..+..+ +.+.+. ..+..+...
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~WAr~~ke----PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~ 752 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADWARNIKE----PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL 752 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHhhhcCC----cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence 23344455544444443322111 1110 12234445567777777664321 122111 235566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH-----------HH
Q 009470 433 LMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS-----------VY 501 (534)
Q Consensus 433 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-----------~~ 501 (534)
+...+.+...+..|.++|..|-+. ..+++.....++|++|..+-+..-+ +.|+.. -|
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhH
Confidence 666777778888899999888653 3567788899999999998876655 344432 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 502 EMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 502 ~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
...-.+|.++|+..||.++++++..+.
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 445568899999999999999886543
No 202
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.15 E-value=0.25 Score=47.04 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFA 438 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (534)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++-.++... +-.+.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445556667777777777765552 35777777778888888888766655332 113456777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
+.|+..+|..++..+ + +..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888877777776652 1 13445667777888777665443
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.026 Score=51.54 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhccCCCCHHHHH
Q 009470 180 EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK---RRASEAQSFFDSLKDKFEPDVIVYT 256 (534)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 256 (534)
+-|...|-.|...|...|+++.|...|.+..+.. .++...+..+..++... ....++..+|+++....+.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4566777777777777777777777777766542 34455555555444432 2344566667766666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6777777777777777777777665
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.10 E-value=0.0023 Score=45.44 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMG-HWNNAYKYIREMIE 490 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 490 (534)
+...|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45567777777777788888888887777753 345566777777777777 67888888777776
No 205
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.0028 Score=44.89 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=24.5
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
+.|++++|.++|+.+.... +.+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555554443 23444444555555555555555555555444
No 206
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.08 E-value=0.0032 Score=44.07 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=27.4
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.+.+.|++++|.+.|+++....+.+...+..+..++...|++++|..+|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555544444555555555555555555555555555543
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.07 E-value=0.011 Score=54.41 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN--TVTYNILMQMFATSKSTDMVLKLKKEMEENE--VEPNVNTYRIL 468 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~~~~~~~l 468 (534)
..|...+..+.+.|++++|...|+.+.+...... ...+..+...|...|++++|...|+.+.+.- -+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555444566777777777777776532111 2455666777777777777777777776541 11123444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+..+...|++++|.++++++++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 556667777777777777777753
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.06 E-value=0.0096 Score=47.83 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 457 EVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 457 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
...|+..+..+++.+|+..|++..|+++++...+..+++-+...|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999888888888898888755443
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.044 Score=50.15 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS---KSTDMVLKLKKEMEENEVEPNVNTYR 466 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~~~~p~~~~~~ 466 (534)
-|...|..|..+|...|+...|..-|.+..+.. .++...+..+..++... ....++..+++++.... +-|.....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 367778888888888888888888888777654 23556666666554433 23456777888887764 44566666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 467 ILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 467 ~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
.|...+...|++.+|...|+.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 67777888888888888888888753
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.97 E-value=0.4 Score=46.40 Aligned_cols=395 Identities=14% Similarity=0.159 Sum_probs=193.5
Q ss_pred cccCCCChHHHHHHHHHHHhCCC---CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 009470 121 GVRHGIPLLQVLSFFNWVTARPE---FVHSPD-LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRR--YV 194 (534)
Q Consensus 121 ~~~~~~~~~~al~~f~~~~~~~~---~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~ 194 (534)
.++..+...++-.+|..+..... +-...+ ..+.++++|.. ++.+.....+.+..+... . ..|-.+..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~--s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-K--SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-C--chHHHHHHHHHHH
Confidence 34445566777777777765321 111112 23455566553 445555555555554421 1 234444333 34
Q ss_pred HcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-----CCCCHHHH
Q 009470 195 RAGLAAEAVHAFNRMEEY--GCAP------------DKIAFSIVISILCRKRRASEAQSFFDSLKDK-----FEPDVIVY 255 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ 255 (534)
+.|.+.+|++.+..-.+. +..+ |-..=+..+..+...|++.++..+++++... ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 677788888777655433 2211 1111244566777888888888888877653 33677778
Q ss_pred HHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 009470 256 TNLVRGWCRAGN---------------ISEAERVFREMKMA------GIQPNVYTYSIVIDALCRC--GQITRAHDVFAE 312 (534)
Q Consensus 256 ~~li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~ 312 (534)
+.++-.+.+.-- ++.+.-...+|... .+.|.......++....-. .+..--+++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 776655554311 11122222222111 1122222222222222111 111112222222
Q ss_pred HHHcCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009470 313 MLEVGCEPNSIT-FNNLMRVHVKASRTEKVLQVYNQMKRLGC----EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 313 m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 387 (534)
-...-+.|+-.. ...+...+.+ +.+++..+-+.+....+ ..=..++..++....+.++...|.+.+.-+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 222333444222 2223333332 34444443333322211 1123456666666677777777777666554332
Q ss_pred CCC-------------------CHHHHHH------------------------HH---HHHHhcCC-hhHHHHHHHHHHh
Q 009470 388 CNP-------------------NASTFNM------------------------IF---RCISKLGD-VNGAHRMYGKMKD 420 (534)
Q Consensus 388 ~~~-------------------~~~~~~~------------------------l~---~~~~~~g~-~~~A~~~~~~m~~ 420 (534)
... |...++. ++ .-+-+.|. -++|+++++.+.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 110 1111111 11 11123343 5667777777765
Q ss_pred CCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH--HHHhCCCHHHHHHHHHH
Q 009470 421 LKCEPNTVTYNILM----QMFAT---SKSTDMVLKLKKEMEENEVEPNV----NTYRILIT--MYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 421 ~~~~p~~~~~~~li----~~~~~---~g~~~~a~~l~~~m~~~~~~p~~----~~~~~li~--~~~~~g~~~~A~~~~~~ 487 (534)
.. .-|..+-|.+. +.|.. ...+.+-..+-+-+.+.|++|-. ..-|.+.. -+...|++.++.-+-.-
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 43 22433333322 12222 22333444444445566766633 33344433 34568999998777666
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 488 MIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 488 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
..+ +.|++.+|..+.-++....++++|.+.+.++.
T Consensus 488 L~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 488 LTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 666 67899999999888889999999998887653
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.87 E-value=0.025 Score=52.09 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPD---VIVYTNLVRGWCRAGNISEAERVFREMKMAGI--QPNVYTYSIVID 295 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~ 295 (534)
|...+..+.+.|++++|...|+.+...+|.+ ..++..+...|...|++++|...|+.+.+.-. ......+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555544443333 23444455555555555555555555543210 011222333334
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 009470 296 ALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~ 316 (534)
.+...|+.++|.+.|+.+++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555554443
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.82 E-value=0.47 Score=45.00 Aligned_cols=291 Identities=14% Similarity=0.142 Sum_probs=164.1
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 185 TFSILVRRYV--RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI--LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 185 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
.|..|-.++. -.|+-..|.++-.+-.+. +.-|...+..++.+ -.-.|+.+.|.+-|+.|.. |..+-..=++
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHH
Confidence 3444444443 345666666655544321 23344444444432 2345777777777777765 3333322222
Q ss_pred H----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHH-
Q 009470 261 G----WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG-CEPNSIT--FNNLMRVH- 332 (534)
Q Consensus 261 ~----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~- 332 (534)
+ .-+.|+.+.|.++-++.-+.-.. =...+...+...|..|+|+.|+++++.-.+.. +.+++.- -..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2 23567777777766666543211 23456667777777788888887777654432 2233221 11122211
Q ss_pred --HHcCChhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009470 333 --VKASRTEKVLQVYNQMKRLGCEADTITY-NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVN 409 (534)
Q Consensus 333 --~~~g~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 409 (534)
.-..+...|...-.+..+. .||..-- -.-..++.+.|+..++-.+++.+.+....|+. .... ...+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY--~~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALLY--VRARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHHH--HHhcCCC--
Confidence 1122344555554444443 4553322 23346788999999999999999988544443 2222 2234443
Q ss_pred HHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHH
Q 009470 410 GAHRMYGKMKDL-KC-EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC-GMGHWNNAYKYIR 486 (534)
Q Consensus 410 ~A~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~ 486 (534)
.+..-+++.... .. +.+....-.+.++-...|++..|..--+.... ..|....|..|...-. ..|+-.++..++-
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 344434433221 11 23556666777888888998888776666655 3778888888777544 4599999999998
Q ss_pred HHHHc
Q 009470 487 EMIEE 491 (534)
Q Consensus 487 ~~~~~ 491 (534)
+.++.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 88774
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.14 Score=42.67 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 326 NNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
..++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444555555555555555555543 4455555555555555555555555555443
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.75 E-value=0.44 Score=45.89 Aligned_cols=76 Identities=9% Similarity=-0.039 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLEVG---CEPNSITFNNLMRVHVK---ASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
.++-.|....+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777888888887777642 11111111222334455 6777777777777555444666677766665
Q ss_pred HH
Q 009470 366 CH 367 (534)
Q Consensus 366 ~~ 367 (534)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.91 Score=46.82 Aligned_cols=321 Identities=10% Similarity=0.101 Sum_probs=187.8
Q ss_pred CCCCCHHHHH-----HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCC
Q 009470 143 EFVHSPDLYH-----EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLA--AEAVHAFNRMEEYGCA 215 (534)
Q Consensus 143 ~~~~~~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~ 215 (534)
|.+.+.+-|. .+++-+...+.+..|+++-..+...-... ..+|......+.+..+. +++++..++=.+...
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 4555555443 45778888899999999988876553222 46777777777777432 233333333222222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------
Q 009470 216 PDKIAFSIVISILCRKRRASEAQSFFDSLKDK---F--EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG-------- 282 (534)
Q Consensus 216 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------- 282 (534)
.....|..+.+-....|+.+-|..+++.=... + --+..-+..-+.-..+.|+.+-...++-.+...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777899999999888743221 0 0122234455666677777777776666654420
Q ss_pred ---CCCCHHHHHHHHH--------HHHHcCCHHHHHHHHH--HHH----HcCCCCCHHHHHHHHHHHHHcCChh------
Q 009470 283 ---IQPNVYTYSIVID--------ALCRCGQITRAHDVFA--EML----EVGCEPNSITFNNLMRVHVKASRTE------ 339 (534)
Q Consensus 283 ---~~p~~~~~~~ll~--------~~~~~g~~~~A~~~~~--~m~----~~~~~~~~~~~~~li~~~~~~g~~~------ 339 (534)
.+.....|..+++ .+...++-.++...|. ... ..|..|+ .....+.+.+.....
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 1111122222221 1111122112221111 100 0121222 222333444433311
Q ss_pred ----HHHHHHHHHH-HcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009470 340 ----KVLQVYNQMK-RLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRM 414 (534)
Q Consensus 340 ----~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 414 (534)
+-+++.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1122222222 12334444556666677888999999999888765 47888999999999999999987777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
-+.++ .+.-|.-.+.+|.+.|+.++|.+.+-+.... .-.+.+|.+.|++.+|.++--+
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 66554 2455778889999999999999988765321 1467789999999999876543
No 216
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.69 E-value=0.44 Score=42.80 Aligned_cols=182 Identities=15% Similarity=0.168 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRN--VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY-GCAPDKIAFSIVI 225 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll 225 (534)
..|+..+ .-.+.|++++|.+.|+.+..+. -+-...+.-.++.++.+.+++++|+..+++..+. +-.|| ..|..-|
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 3455444 4457799999999999998763 2345677778888899999999999999998754 33333 3444445
Q ss_pred HHHHh-------cCCHHHHHHH---HHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 226 SILCR-------KRRASEAQSF---FDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVID 295 (534)
Q Consensus 226 ~~~~~-------~g~~~~A~~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 295 (534)
.+++. .+|...+.+. |+.+..++|-+..+- .|...+..+... . ...=..+.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~--------------dA~~~i~~~~d~---L-A~~Em~Iar 175 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP--------------DAKARIVKLNDA---L-AGHEMAIAR 175 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh--------------hHHHHHHHHHHH---H-HHHHHHHHH
Confidence 44442 1233333333 333334443322211 111111111110 0 000012345
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGCEPN---SITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
.|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|.+.|-.++|.+.-.-+...
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 566777777777777777665 1222 233444556677777777776665555443
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.66 E-value=0.014 Score=41.85 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=37.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
..|.+.+++++|.++++.+...+ +.+...+......+.+.|++++|.+.|++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566677777777777776653 445556666666777777777777777777764
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.64 E-value=0.0077 Score=43.97 Aligned_cols=64 Identities=22% Similarity=0.407 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKC-LK---PG-SSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
.+|+.+...|...|++++|+.+|+++++... .. |+ ..++..+...+...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555566666666666666665553210 11 11 23445555566666666666666665543
No 219
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.63 E-value=1 Score=49.01 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 009470 240 FFDSLKDKFEPDVIVYTNLVRGWCRAG--NISEAERVFREMKM 280 (534)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 280 (534)
..+....+..|+ ...-.++..|.+.+ .+++|++...+...
T Consensus 779 ~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 779 AVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 333333445555 44556777788777 67777777777764
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.44 E-value=0.017 Score=41.41 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 530 (534)
-..|.+.+++++|+++++.+++.. +.+...+.....++.+.|++++|.+.++..++.+-.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356889999999999999999965 456677888899999999999999999999987543
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.39 E-value=0.32 Score=40.59 Aligned_cols=85 Identities=6% Similarity=-0.027 Sum_probs=37.7
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009470 334 KASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHR 413 (534)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 413 (534)
..|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|......+. -|...+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555554444333 22333334444444444555555555444433321 133333344444555555555555
Q ss_pred HHHHHHh
Q 009470 414 MYGKMKD 420 (534)
Q Consensus 414 ~~~~m~~ 420 (534)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5544443
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.38 E-value=0.024 Score=47.34 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
.++..+...|++++|.++.+.+.... +.+...|..+|.+|...|+..+|.+.|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444444444444444444432 123444444444444444444444444443
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.37 E-value=0.14 Score=42.64 Aligned_cols=89 Identities=10% Similarity=-0.108 Sum_probs=67.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
--+...|++++|..+|+-+.-.+. -+..-|..|..++-..+++++|+..+......+ .-|...+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 345678999999999988876553 366667778888888889999999888776544 234444556677888889999
Q ss_pred HHHHHHHHHHH
Q 009470 480 NAYKYIREMIE 490 (534)
Q Consensus 480 ~A~~~~~~~~~ 490 (534)
.|+..|...++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988887
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.32 E-value=1.1 Score=43.21 Aligned_cols=70 Identities=9% Similarity=0.048 Sum_probs=30.3
Q ss_pred HHHhcCCHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDK----FEPDVIVYTNLVRGWCR---AGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (534)
.|....+++...++++.+..- ......+-...+-++.+ .|+.++|++++..+......++..+|..+...
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344455555555555554432 11122222233333444 45555555555554333333444454444433
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.31 E-value=0.18 Score=50.29 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=100.6
Q ss_pred HHHHccCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009470 156 NLAGKVRQFDLAWHFIDL-MKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234 (534)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 234 (534)
....-.|+++.+.++.+. -.-..+ .....+.++.-+.+.|.++.|+++-+.-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 334456778887666641 111112 24567888888889999999988753321 224456678999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 235 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
+.|.++.+++. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+...
T Consensus 335 ~~A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 335 DIALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 98887765443 677899999999999999999998887653 5566777888888888888887777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 009470 315 EVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQ 347 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (534)
..| + ++....++.-.|+.++..+++.+
T Consensus 401 ~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 665 2 44555556666777777666544
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.31 E-value=0.96 Score=42.37 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=11.8
Q ss_pred HHhcCChhHHHHHHHHH
Q 009470 402 ISKLGDVNGAHRMYGKM 418 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m 418 (534)
+.+.++++.|.++|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45677778887777643
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.75 Score=40.83 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=100.7
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009470 141 RPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIA 220 (534)
Q Consensus 141 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 220 (534)
.+++..-...|.....+|...++|++|...+.+..+- .+.+...|. - ..-++.|.-+.++|.+. .--...
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHH
Confidence 3455556678888889999999999999888776532 111111111 1 12233344444444331 112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCCCHHHHHHHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM---AG--IQPNVYTYSIVID 295 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g--~~p~~~~~~~ll~ 295 (534)
|+-....|...|..+.|-..+++... ..+..++++|+++|++... .+ ...-...|...-.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 44455556666666665555554321 1112233333333333211 00 0111222333344
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCChhhHHHHHHHH
Q 009470 296 ALCRCGQITRAHDVFAEMLEV----GCEPN-SITFNNLMRVHVKASRTEKVLQVYNQMKRLG---CEADTITYNFLIDCH 367 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~ 367 (534)
.+.+..++++|-..+.+-... .-.++ -..|...|-.+.-..++..|.+.++.-.+.+ -..+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 455555555554433322111 00111 1234444555555666666666666643332 123445555555554
Q ss_pred HHcCChHHHHHHHH
Q 009470 368 CKDGKLEDAIKVLN 381 (534)
Q Consensus 368 ~~~g~~~~A~~~~~ 381 (534)
..|+.+++.+++.
T Consensus 239 -d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 -DEGDIEEIKKVLS 251 (308)
T ss_pred -ccCCHHHHHHHHc
Confidence 3456666555543
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.27 E-value=0.82 Score=41.13 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 332 HVKASRTEKVLQVYNQMKRLG--CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.+++++|...+++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 346677777777777776542 1122344445556667777777777777777665
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.21 E-value=0.39 Score=47.11 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHc-CCCCC-hhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009470 338 TEKVLQVYNQMKRL-GCEAD-TITYNFLIDCHCKD---------GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG 406 (534)
Q Consensus 338 ~~~a~~~~~~~~~~-g~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 406 (534)
.+.|+.+|.+.... ...|+ ...|..+..++... .+..+|.++.+...+.+. -|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 35667777776621 12333 44555555444322 234455666666666653 36666666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN---VNTYRILITMYCGMGHWNNAYK 483 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~ 483 (534)
+++.|..+|++....+. ....+|......+.-.|+.++|.+.+++..+. .|. .......+..|+..+ .++|++
T Consensus 353 ~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 67777777777766541 13344444444555567777777777775543 232 223333344555543 466666
Q ss_pred HHHH
Q 009470 484 YIRE 487 (534)
Q Consensus 484 ~~~~ 487 (534)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 5543
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.19 E-value=1.7 Score=44.08 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCChhHHH
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIV-IDALCRCGQITRAHDVFAEMLEVG---CEPNSITFNNLMRVHVKASRTEKVL 342 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~ 342 (534)
+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++..... .+.....+-.+.-.+.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 444555555555443 2343333222 223334455555555555433210 0111222233333444555555555
Q ss_pred HHHHHHHHc
Q 009470 343 QVYNQMKRL 351 (534)
Q Consensus 343 ~~~~~~~~~ 351 (534)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.19 E-value=0.86 Score=40.63 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=142.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHH
Q 009470 265 AGNISEAERVFREMKMAGIQ-PNVYTYSIVIDALCRCGQITRAHDVFAEMLEV-GCEPNSITFNNLMRVHVKASRTEKVL 342 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (534)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654322 13566677777788888888888888777652 22445556666677777778888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHH-HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 343 QVYNQMKRLGCEADTITYNFLID-CHCKDGKLEDAIKVLNSMVRKGC--NPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
+.+.......... ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877654222 222222333 67788888888888888755321 1233334444444566778888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 420 DLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
..........+..+...+...++++.+...+...... .|+ ...+..+...+...|.++++...+.+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6432113566667777777777788888888777764 232 344444444444666778888777777764
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.18 E-value=0.48 Score=37.66 Aligned_cols=140 Identities=11% Similarity=0.208 Sum_probs=80.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
..-.|.+++..+++.+.... .+..-+|-++--....-+-+-..+.++.+-. ..|.. .+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHH
Confidence 34567778888888777765 2555566555544444444444444444322 22322 23444433
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
...+-.+ ..+....+..+..+...|+-+.-.++++++.+.+ .+++.....+..+|.+.|+..++.+++.++.+
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3333322 2244556667778888899888888888887643 68888888899999999999999999999999
Q ss_pred cCC
Q 009470 527 RGF 529 (534)
Q Consensus 527 ~g~ 529 (534)
+|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 886
No 233
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.15 E-value=1.4 Score=42.80 Aligned_cols=127 Identities=14% Similarity=0.260 Sum_probs=80.7
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 009470 369 KDGK-LEDAIKVLNSMVRKGCNPNASTFNMIF----RCISK---LGDVNGAHRMYGKMKDLKCEPN----TVTYNILMQM 436 (534)
Q Consensus 369 ~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~ 436 (534)
+.|. -++|..+++.+.+-. .-|...-|.+. .+|.+ ...+..-.++-+-+.+.|+.|- ...-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 3444 677777777776542 12333333222 22221 2233344444445556776653 3444555543
Q ss_pred --HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 009470 437 --FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMV 504 (534)
Q Consensus 437 --~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 504 (534)
+...|++.++.-.-..+.+ +.|+..+|..+.-++....++++|.+++.. ++|+..+++.=
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~dsk 531 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRDSK 531 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHHHH
Confidence 4568999998876666665 689999999999999999999999999875 47887777653
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=1 Score=41.34 Aligned_cols=142 Identities=11% Similarity=0.185 Sum_probs=56.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
...|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+-...-.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3444445555544444443221 233334444455555555555555544432111111111111122222333333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG 512 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 512 (534)
.+-.+.... +-|...-..+...+...|+.++|.+.+-.++++..-.-|...-..++..+.-.|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333221 224444444455555555555555555444443212233344444555544444
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.11 E-value=0.34 Score=48.34 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHV 333 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 333 (534)
-.+.++..+-+.|..+.|+++..+-. .-.+...+.|+++.|.++.++. .+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35555555555565555555533211 1122334555555555443322 24455666666666
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009470 334 KASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHR 413 (534)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 413 (534)
+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+|- ++....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666655555432 33444455555555555555555544431 3444444444555555555
Q ss_pred HHH
Q 009470 414 MYG 416 (534)
Q Consensus 414 ~~~ 416 (534)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 236
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.07 E-value=0.019 Score=41.83 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEEN----EV-EPN-VNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+|+.+...|...|++++|+..+++..+. |- .++ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666667777777777777777666532 10 111 34567777777888888888888877665
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.15 Score=48.65 Aligned_cols=140 Identities=13% Similarity=0.115 Sum_probs=88.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS 442 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 442 (534)
-.+.|.+.|++..|...|+++...= . +...-+.++..... ..-..++..+..+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-E------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-h------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 3477888899999988888866530 0 00111111111111 1123356677778888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHcCCH-HHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEM-VLQQLRRAGQL-QKHEEL 520 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~-~~a~~~ 520 (534)
+.+|+...+...+.+ +.|....-.=..+|...|+++.|+..|+++++ +.|+...... |+..-.+..+. +...++
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888875 66777777777888888899999999998888 4565544443 43333333333 334677
Q ss_pred HHHHHHc
Q 009470 521 VEKMVDR 527 (534)
Q Consensus 521 ~~~~~~~ 527 (534)
|..|..+
T Consensus 349 y~~mF~k 355 (397)
T KOG0543|consen 349 YANMFAK 355 (397)
T ss_pred HHHHhhc
Confidence 7777654
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.39 Score=44.55 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=63.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHhcCCHHH
Q 009470 195 RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVI----VYTNLVRGWCRAGNISE 270 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~ 270 (534)
..|+..+|-..++++.+. .+.|...+...=.++...|+.+.-...++++.....+|.. +-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345555555555555543 3455555555556666666666666666665544333332 22334444556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAE 312 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 312 (534)
|++.-++..+.+. -|...-.++...+-..|++.++.++..+
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666666655432 2445555555555666666666665544
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.12 Score=46.73 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCE--PNTVTYNILMQMFATSKSTDMVLKLKKEMEEN-EVEP-NVNTYRILI 469 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p-~~~~~~~li 469 (534)
.|+.-+.. .+.|++..|...|...++.... -....+-.|.+.+...|++++|..+|..+.+. +-.| -...+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 3455677777777666654311 01223445666666777777777766666553 1111 124555566
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcC
Q 009470 470 TMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
....+.|+.++|+..|+++++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 66666777777777777776654
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=1.3 Score=40.70 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=27.2
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
....|++.+|...|.......+.+...--.++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445555555555555544444444445555555555555555555555543
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.90 E-value=0.14 Score=50.08 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 392 ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT----VTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
...++.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555432 221 2345555555555555555555555544
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.88 E-value=0.7 Score=38.06 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHHc
Q 009470 147 SPDLYHEMINLAGK 160 (534)
Q Consensus 147 ~~~~~~~li~~~~~ 160 (534)
++..++.++..|++
T Consensus 40 ~~~~~~~li~ly~~ 53 (140)
T smart00299 40 NPALQTKLIELYAK 53 (140)
T ss_pred chhHHHHHHHHHHH
Confidence 33344444444443
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.87 E-value=3.4 Score=45.22 Aligned_cols=313 Identities=13% Similarity=0.134 Sum_probs=147.4
Q ss_pred HHHHHHHhCCC-----CCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC----HH
Q 009470 133 SFFNWVTARPE-----FVHSPDLYHEMINLAGKV-RQFDLAWHFIDLMKSRNVEITV--DTFSILVRRYVRAGL----AA 200 (534)
Q Consensus 133 ~~f~~~~~~~~-----~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~----~~ 200 (534)
.+|.|+.++.. +.+++..|-.-+.++.+. ++.+-...++-.+...++.-+. .++.+-...|..... ..
T Consensus 695 ~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv~ 774 (1265)
T KOG1920|consen 695 EAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKVN 774 (1265)
T ss_pred HHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEeccchhhHHH
Confidence 56778876432 345566666666666644 4455555555555543321110 111111112222222 22
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhc-cCC--------------CCHHHHHHH-----
Q 009470 201 EAVHAFNRMEEYGCAPDKIAFSIVISILCRKR--RASEAQSFFDSLKD-KFE--------------PDVIVYTNL----- 258 (534)
Q Consensus 201 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~-~~~--------------~~~~~~~~l----- 258 (534)
...+++...... ..|+ .....+|..|.+.+ .++.|++...++.. ... +....|+.-
T Consensus 775 ~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYD 852 (1265)
T KOG1920|consen 775 SVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYD 852 (1265)
T ss_pred HHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccc
Confidence 223333333322 2355 44556777888877 67777776666553 100 111112211
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 259 -----VRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHV 333 (534)
Q Consensus 259 -----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 333 (534)
+-+...+.|+.+-+-+++++.+. +++..-| .|+ ...|+++.|+.-+.++. ...|.-.++.--
T Consensus 853 l~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID--~~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~ 919 (1265)
T KOG1920|consen 853 LDLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KID--DYLKRYEDALSHLSECG-------ETYFPECKNYIK 919 (1265)
T ss_pred hHHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHH--HHHHHHHHHHHHHHHcC-------ccccHHHHHHHH
Confidence 11112223333333333333321 1111100 011 11234444544444332 112333444444
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhh----HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009470 334 KASRTEKVLQVYNQMKRLGCEADTIT----YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVN 409 (534)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 409 (534)
+.|-+++|+.++ .++... |.+....+...+.+++|--.|+..-+ ....+.+|...|++.
T Consensus 920 kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 920 KHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred hcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 556666666555 334333 33344444556667777666665432 123456677777777
Q ss_pred HHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 410 GAHRMYGKMKDLKCEPNTVT--YNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 410 ~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
+|..+..++... -|... -..|+.-+...++.-+|-++..+.... ..-.+..||+...|++|+++...
T Consensus 983 ~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 983 EALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 777777766531 12221 245566666777777777777666442 12233456666677777666544
Q ss_pred H
Q 009470 488 M 488 (534)
Q Consensus 488 ~ 488 (534)
.
T Consensus 1052 ~ 1052 (1265)
T KOG1920|consen 1052 A 1052 (1265)
T ss_pred c
Confidence 3
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.78 E-value=0.36 Score=39.30 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN--VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
++..+..-.....+.|+++.|.+.|+.+..+- -+-...+--.++.+|.+.|++++|+..+++..+....--..-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34444444555667899999999998888772 1335567778888999999999999999988875432222345444
Q ss_pred HHHHHh
Q 009470 225 ISILCR 230 (534)
Q Consensus 225 l~~~~~ 230 (534)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 544443
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.76 E-value=0.21 Score=40.21 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=65.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQ 435 (534)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 435 (534)
|..++..+|.++++.|+.+....+++....-++ +.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 455677777777777777777777765543221 110 00000 1123345788899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEE-NEVEPNVNTYRILITMY 472 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~ 472 (534)
+|+..|++..|+++++...+ .+++.+..+|..|++-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999988765 57788888888888733
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.62 E-value=0.48 Score=37.56 Aligned_cols=89 Identities=16% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHHcCCH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA-GIQPNV---YTYSIVIDALCRCGQI 303 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~ 303 (534)
+...|+++.|++.|.+...-.|.....||.-.+++--.|+.++|++-+++..+. |.+ .. ..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCch
Confidence 344555555555555555545555555666666665566666665555555443 211 11 1222333345555666
Q ss_pred HHHHHHHHHHHHcC
Q 009470 304 TRAHDVFAEMLEVG 317 (534)
Q Consensus 304 ~~A~~~~~~m~~~~ 317 (534)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.24 Score=47.29 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
.++.+.-++.+.+++..|++.-++....-+.|+....--.+++...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34455555666666666666666655555556666666666666666666666666666653
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.62 E-value=0.33 Score=47.47 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 009470 180 EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK----IAFSIVISILCRKRRASEAQSFFDSLKDK 247 (534)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 247 (534)
+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999998875 4553 35888899999999999999999987653
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=1.6 Score=38.88 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009470 432 ILMQMFATSKSTDMVLKLKKEMEENE---VEPNVNTYRILITMYCGMGHWNNAYKY 484 (534)
Q Consensus 432 ~li~~~~~~g~~~~a~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~ 484 (534)
..|-.+.-..++..|.++++.--+.+ -.-+..+...|+.+| ..|+.+++.++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 33334444455666666665533211 122344555555544 33555554443
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.95 Score=47.30 Aligned_cols=180 Identities=15% Similarity=0.148 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
...-+..+++...++-|..+.+.-......-..........+.+.|++++|...|-+-+.. +.|. .++.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4455666677777777776655432211111122333444556778888888777766532 2222 244556666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 009470 301 GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVL 380 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (534)
.++.+-..+++.+.+.|.. +...-..|+.+|.+.++.++..+..+... .|.. ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 6777777778888888754 55555678888888888887777666554 2211 112344555566666666666665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKM 418 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 418 (534)
..... +......++ -..+++++|.+.+..+
T Consensus 487 ~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 54432 233333333 3567788888777655
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.53 E-value=0.96 Score=36.05 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
..++.+...|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444555555555555555554322 4455555555555555555555555555555555
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.51 E-value=0.59 Score=43.90 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=140.2
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---CCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKMA--GIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV--GCE---PNSITFNNLMRVHVK 334 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~---~~~~~~~~li~~~~~ 334 (534)
+....+.+.|+..+.+-... +..--..+|..+..+.++.|.+++++..--.-++. ... .--..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888776543 11223456777888889999988877653322211 001 112344445555555
Q ss_pred cCChhHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc
Q 009470 335 ASRTEKVLQVYNQMKRL-GCEA---DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG-----CNPNASTFNMIFRCISKL 405 (534)
Q Consensus 335 ~g~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~ 405 (534)
..++.+++.+-+.-... |..+ .......+..++...+.++++++.|+...+-. ......++..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554443322 2222 22344556678888889999999998877542 122346788888889999
Q ss_pred CChhHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHH----HHHHHHH
Q 009470 406 GDVNGAHRMYGKMKD----LKCEPNTVTYN-----ILMQMFATSKSTDMVLKLKKEMEENEV-EPNVNT----YRILITM 471 (534)
Q Consensus 406 g~~~~A~~~~~~m~~----~~~~p~~~~~~-----~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~~~~----~~~li~~ 471 (534)
.|+++|.-+..+..+ .++..-..-|. .+.-++...|+...|.+.-++..+..+ .-|..+ ...+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999998877766543 23221112222 334466778888888888777654211 124443 3456677
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 009470 472 YCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~ 490 (534)
|...|+.+.|+.-+++++.
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 8888999998888877765
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.45 E-value=1.9 Score=40.73 Aligned_cols=227 Identities=10% Similarity=0.079 Sum_probs=141.2
Q ss_pred HHhcCCHHHHHHHHHHhhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKF---EPDVIVYTNLVRGWCRAGNISEAERVFREMKMA--GIQPN---VYTYSIVIDALCR 299 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~ 299 (534)
+....+.++|+..+.+...+. .....+|..+..+.++.|.+++++..--.-++. ...-. ...|-.+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888887755431 223467788889999999988877643222110 01111 2234444455555
Q ss_pred cCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHHc
Q 009470 300 CGQITRAHDVFAEMLEV-GCEP---NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC-----EADTITYNFLIDCHCKD 370 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~ 370 (534)
..++.+++.+-..-... |..+ .-....++.+++...+.++++++.|+...+.-. -....+|-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554433322 2222 123344577788888899999999998765321 12346788999999999
Q ss_pred CChHHHHHHHHHHHHC----CCCCCH-HHH-----HHHHHHHHhcCChhHHHHHHHHHH----hCCCCC-CHHHHHHHHH
Q 009470 371 GKLEDAIKVLNSMVRK----GCNPNA-STF-----NMIFRCISKLGDVNGAHRMYGKMK----DLKCEP-NTVTYNILMQ 435 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~----~~~~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p-~~~~~~~li~ 435 (534)
.|+++|.-+..+..+. ++. |. .-| ..|.-++...|++..|.+.-++.. +.|-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999999888776553 322 22 122 234456777888888888777664 344221 2233456777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~ 455 (534)
.|...|+.|.|+.-|+....
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 88889999998888877643
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=95.43 E-value=1.1 Score=44.09 Aligned_cols=145 Identities=11% Similarity=0.078 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009470 164 FDLAWHFIDLMK---SRNVEITVDTFSILVRRYVR---------AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231 (534)
Q Consensus 164 ~~~A~~~~~~m~---~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 231 (534)
.+.|..+|.+.. +.+ +.....|..+..++.. .....+|.++.++..+.+ +-|..+...+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456777787777 332 1224444444443332 123445555565655554 45566666666666666
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 232 RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI-QPNVYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 232 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
++++.|...|++.....|....+|....-...-.|+.++|.+.+++..+... ..........++.|+..+ .++|++++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 6677777777776665555566666666666666777777777776544321 111222233333444433 45555554
Q ss_pred H
Q 009470 311 A 311 (534)
Q Consensus 311 ~ 311 (534)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.42 E-value=0.41 Score=37.95 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=53.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhCCC
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNT---YRILITMYCGMGH 477 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~---~~~li~~~~~~g~ 477 (534)
++...|+++.|++.|.+....- +-....||.-.+++.-.|+.++|+.=+++..+..-.-.... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556677777777777666543 23556677777777777777777776666665321112222 2222224555666
Q ss_pred HHHHHHHHHHHHHcC
Q 009470 478 WNNAYKYIREMIEEK 492 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~ 492 (534)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 677777776666654
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.41 E-value=1.8 Score=38.45 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKD--KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVID- 295 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~- 295 (534)
..+......+...++...+...+..... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 4444455555555555555555555443 233344445555555555555555655555555432221 111111112
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCh
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGC--EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKL 373 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 373 (534)
.+...|++++|...+.+...... ......+......+...++.+.+...+....+.........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555555533211 0112222222222334444555555444444332110233344444444444444
Q ss_pred HHHHHHHHHHHH
Q 009470 374 EDAIKVLNSMVR 385 (534)
Q Consensus 374 ~~A~~~~~~m~~ 385 (534)
++|...+.....
T Consensus 219 ~~a~~~~~~~~~ 230 (291)
T COG0457 219 EEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.37 E-value=3.6 Score=41.63 Aligned_cols=369 Identities=9% Similarity=0.052 Sum_probs=189.2
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 009470 132 LSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYV-RAGLAAEAVHAFNRME 210 (534)
Q Consensus 132 l~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 210 (534)
...++.++. .++.--.-|......=.+.|..+.+..+|++-... ++.++..|.....-+. ..|+.+...+.|+...
T Consensus 65 r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 65 REVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 334444442 23444456666777777788888888888876654 4566666665555443 4467777777777776
Q ss_pred Hc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHH--
Q 009470 211 EY-GCA-PDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA------GNISEAERVFREMKM-- 280 (534)
Q Consensus 211 ~~-g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~------g~~~~A~~~~~~m~~-- 280 (534)
.. |.. -....|...|..-..+++......+++++.+--.....-|-.--..+.+. ...+++.++-....+
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 43 321 12344555666556677777777777776542111111111111111111 122222222221111
Q ss_pred ------------------CCCCCCHH--HHHHHH-------HHHHHcCCHHHHHHHHHHHHHcC---C----CCCHHHHH
Q 009470 281 ------------------AGIQPNVY--TYSIVI-------DALCRCGQITRAHDVFAEMLEVG---C----EPNSITFN 326 (534)
Q Consensus 281 ------------------~g~~p~~~--~~~~ll-------~~~~~~g~~~~A~~~~~~m~~~~---~----~~~~~~~~ 326 (534)
.+-+-+.. ..+.+- ..+-......+....+++-+..- + .++..+|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 00000000 001110 11111112222222233222211 1 23456788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN--PNASTFNMIFRCISK 404 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l~~~~~~ 404 (534)
.-+..-.+.|+.+.+.-+|+...-. +..=...|--.+.-....|+.+-|..++....+--.+ |....+.+. ..-.
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~ 378 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR--FEES 378 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHh
Confidence 8888888889999888888876532 1111233333444444558888888877766655333 222223322 2345
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHH----H-HHHhC
Q 009470 405 LGDVNGAHRMYGKMKDLKCEPNTVT-YNILMQMFATSKSTDMVLK---LKKEMEENEVEPNVNTYRILI----T-MYCGM 475 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~---l~~~m~~~~~~p~~~~~~~li----~-~~~~~ 475 (534)
.|++..|..+++.+.+.- |+..- -..-+....+.|+.+.+.. ++....+. .-+..+...+. + .+.-.
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHh
Confidence 679999999999987653 44322 2223344556777777773 33333221 11212222222 1 12235
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 009470 476 GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG 512 (534)
Q Consensus 476 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 512 (534)
++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 455 ~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI--LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCC
Confidence 7788999999998885 4566677777777765554
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.35 E-value=0.11 Score=47.63 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 130 QVLSFFNWVTARPEFV--HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFN 207 (534)
Q Consensus 130 ~al~~f~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (534)
.-..|++|+......- .-..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+
T Consensus 133 ~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 133 GDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3345777776532211 112367778888888888888888888888876 5677888888888888888888888888
Q ss_pred HHHH-----cCCCCCHHHHHHHHHH
Q 009470 208 RMEE-----YGCAPDKIAFSIVISI 227 (534)
Q Consensus 208 ~m~~-----~g~~~~~~~~~~ll~~ 227 (534)
++.+ .|+.|...+.......
T Consensus 212 ~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 212 QLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHhhhhcCCCccHHHHHHHHHH
Confidence 7754 5777777666555544
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.29 E-value=2.6 Score=39.51 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 324 TFNNLMRVHVKASRTE---KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
++..++.+|...+..+ +|..+++.+.... .-...++-.-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555555443 3333444443221 222334444444455556666666666666654
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.28 E-value=3.9 Score=41.52 Aligned_cols=176 Identities=17% Similarity=0.250 Sum_probs=113.3
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHH----cCCHHHHH
Q 009470 238 QSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG-IQPN-----VYTYSIVIDALCR----CGQITRAH 307 (534)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~ll~~~~~----~g~~~~A~ 307 (534)
.-+|.-+..-+||. +..++...+-.||-+.+++.+.+..+.+ +.-. ...|+.++..++. ..+.+.|.
T Consensus 177 ~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 177 FGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 34455555545553 4456666677788888888888876542 2211 1234444444443 45678899
Q ss_pred HHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHcC---CCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 308 DVFAEMLEVGCEPNSITFNNL-MRVHVKASRTEKVLQVYNQMKRLG---CEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
++++.+.+. -|+...|... .+.+...|+.++|.+.|++..... -+.....+--+.-++.-.+++++|.+.+..+
T Consensus 254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 999999887 5776666543 356777899999999999765321 1223344555666778889999999999999
Q ss_pred HHCCCCCCHHHHHHHHH-HHHhcCCh-------hHHHHHHHHHH
Q 009470 384 VRKGCNPNASTFNMIFR-CISKLGDV-------NGAHRMYGKMK 419 (534)
Q Consensus 384 ~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~m~ 419 (534)
.+..- -+..+|.-+.. ++...|+. ++|.++|.++.
T Consensus 332 ~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 332 LKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred Hhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88642 24444444433 34456666 77888887764
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.25 E-value=3.5 Score=40.85 Aligned_cols=150 Identities=16% Similarity=0.212 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
.++.-.-+..+.+.-.+.-++..+. .||..+.-+++ +--....+.+|++++++..+.|- ..+. +..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg-------~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLG-------KSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhc-------hhh
Confidence 4445555666666666666666653 34432222221 12234557788888887766531 0110 000
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-PNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
..+..-..++....+...+-..+-..+..++-+.|+.++|.+.+++|.+.... -...+...|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00111111122222222223333345666777788888888888888765322 13345667788888888888888888
Q ss_pred HHHHh
Q 009470 416 GKMKD 420 (534)
Q Consensus 416 ~~m~~ 420 (534)
.+..+
T Consensus 319 ~kYdD 323 (539)
T PF04184_consen 319 AKYDD 323 (539)
T ss_pred HHhcc
Confidence 77654
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.16 E-value=1.5 Score=36.07 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR 195 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 195 (534)
++..+.+.+.......+++.+...+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444444444444444443 1333444444444443
No 263
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.12 E-value=3 Score=39.29 Aligned_cols=127 Identities=13% Similarity=0.269 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHhcCC-
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCR--KR----RASEAQSFFDSLKDK----FEPDVIVYTNLVRGWCRAGN- 267 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~- 267 (534)
+++.+.+++.|.+.|+.-+..+|-+..-.... .. ...+|..+|+.|++. ..++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887777666554433332 11 244567777777654 23344445444433 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 268 ---ISEAERVFREMKMAGIQPNVY--TYSIVIDALCRCG--QITRAHDVFAEMLEVGCEPNSITFNN 327 (534)
Q Consensus 268 ---~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (534)
.+.++.+|+.+.+.|+..+-. ....++...-... .+.++.++++.+.+.|++.....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 345566666666655543321 1222222111111 13456666666666666655555443
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.11 E-value=0.51 Score=46.43 Aligned_cols=169 Identities=12% Similarity=0.154 Sum_probs=91.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDV 408 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 408 (534)
|.-.-+..+.+.-.+.-++..+. .||..+.-.++ +--......+|.+++++..+.|-. .+..- ......|
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g-- 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHG-- 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhccc--
Confidence 33334555565555555555543 34332221111 122344577888888887765311 11000 0000111
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 409 NGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-VEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
..++........+-..+-..+..++.+.|+.++|++.+++|.+.. ..-+......|+.++...+.+.++..++.+
T Consensus 245 ----~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 245 ----HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ----chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111112222212223333456777788999999999999998642 222345778899999999999999999998
Q ss_pred HHHcCCCCCCHH--HHHHHHHHHHHcCC
Q 009470 488 MIEEKCLKPGSS--VYEMVLQQLRRAGQ 513 (534)
Q Consensus 488 ~~~~~~~~p~~~--~~~~l~~~~~~~g~ 513 (534)
.-+.. -|... .|+..+-.....|+
T Consensus 321 YdDi~--lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 321 YDDIS--LPKSATICYTAALLKARAVGD 346 (539)
T ss_pred hcccc--CCchHHHHHHHHHHHHHhhcc
Confidence 75432 24433 34544433343443
No 265
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.10 E-value=3.6 Score=40.11 Aligned_cols=129 Identities=12% Similarity=0.189 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 009470 392 ASTFNMIFRCISKLGDVNGAHRMYGKMKDLK-CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNT-YRILI 469 (534)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~-~~~li 469 (534)
..+|...+..-.+...++.|..+|-+..+.+ ..++...+++++..++ .|+...|..+|+--..+ .||... ....+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455566666666666666777776666665 4455666666666555 35556666666654433 233322 23444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 470 TMYCGMGHWNNAYKYIREMIEEKCLKPG--SSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
..+...++-+.|..+|+..+++ +..+ ..+|..+++.-..-|++..+..+-+++.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 5555666666666666655543 2222 4556666666666666666655555544
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.09 E-value=0.21 Score=45.14 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------------hhHHH
Q 009470 284 QPNVYTYSIVIDALCR-----CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR----------------TEKVL 342 (534)
Q Consensus 284 ~p~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------------~~~a~ 342 (534)
+.|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3456666666666543 34566666667777777777777777777776544321 12244
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDCHCKDG 371 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g 371 (534)
+++++|...|+.||..+-..|++++.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 55555555555555555555555554444
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.06 E-value=0.81 Score=37.32 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPD---VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (534)
...+.|++++|.+.|+.+..+++.. ..+.-.++.+|.+.+++++|...+++.++....-.-.-|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3456778888888888887765543 344556778888888888888888888776443333445555555443
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.00 E-value=0.23 Score=44.84 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG----------------LAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
+.++-....++.|.+-|+.-|..+|+.|+..+-+.. +-+-+++++++|+..|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 334444445677778888888888888887654332 3345788899999999999999988899
Q ss_pred HHHHhcCCHH-HHHHHHHHh
Q 009470 226 SILCRKRRAS-EAQSFFDSL 244 (534)
Q Consensus 226 ~~~~~~g~~~-~A~~~~~~~ 244 (534)
+++.+.+-.- +..++.-.|
T Consensus 166 n~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhccccccHHHHHHHHHhh
Confidence 8888776532 334444343
No 269
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=0.58 Score=42.44 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=62.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNV--EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY-GCAP-DKIAFSIVI 225 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~-~~~~~~~ll 225 (534)
.|+.-++.+ +.|++..|.+.|....+... ......+--|...+...|++++|..+|..+.+. +-.| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555544 45557777777777666521 123344555677777777777777777776542 1112 235566666
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIV 254 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 254 (534)
....+.|+.++|...|+++.+++|....+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66677777777777777777666655443
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=6 Score=41.73 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=65.6
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009470 156 NLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRAS 235 (534)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 235 (534)
+.+.+.|++++|.+.|-+-... +.| ..+|.-|....+..+-..+++.+.+.|+ .+..--..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchH
Confidence 3344555566555555433221 111 1234444444444455555555555554 23333445666666666666
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 236 EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 236 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+-.++.+....+.- ..-....+..+.+.+-.++|..+-.+... .......+ +-..|++++|++.+..+
T Consensus 449 kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 65555554432200 00123344444455555555444433321 22222222 33467777777777655
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.76 E-value=2 Score=37.54 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
.-+++||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +---|++.-|.+-|...-+
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 3456777777777777777777777777666653322222222222 2235666666666555544
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=2.2 Score=39.89 Aligned_cols=154 Identities=8% Similarity=-0.028 Sum_probs=109.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCChhhHHHHHHHHHHcCChH
Q 009470 298 CRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL---GCEADTITYNFLIDCHCKDGKLE 374 (534)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~ 374 (534)
--.|+..+|-..++++.+.- +.|...+...=++|.-.|+.+.-...++++... +++-...+-..+..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34788888888999888763 557778888888899999998888888887654 22222333344556677889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 375 DAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC---EPNTVTYNILMQMFATSKSTDMVLKLKK 451 (534)
Q Consensus 375 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~l~~ 451 (534)
+|++.-++..+.+ +.|...-.++...+.-.|+..++.++..+-...-- -.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988875 34778888888888889999999888776543210 0011223333445566789999999987
Q ss_pred HH
Q 009470 452 EM 453 (534)
Q Consensus 452 ~m 453 (534)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 64
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.61 E-value=6.7 Score=40.85 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=25.4
Q ss_pred HccCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcC
Q 009470 159 GKVRQFDLAWHFIDLMKS-------RNVEITVDTFSILVRRYVRAG-----LAAEAVHAFNRMEEYG 213 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g 213 (534)
+...+.+.|..+|+.+.+ .+ ......-+...|.+.. +.+.|+.++.+..+.|
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 345566666666666544 22 1123344444444432 3444555555555544
No 274
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.45 E-value=7.3 Score=40.59 Aligned_cols=245 Identities=14% Similarity=0.103 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHH--HHH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC--
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNL--VRG-WCRAGNISEAERVFREMKM-------AGIQPNVYTYSIVIDALCRCG-- 301 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g-- 301 (534)
...|.++++...............+ ..+ +....|.+.|+.+++.+.+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4456666666544211111111111 222 3455677777777777755 33 2234445555565532
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH----HcCCh
Q 009470 302 ---QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK-ASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC----KDGKL 373 (534)
Q Consensus 302 ---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g~~ 373 (534)
+.+.|..++...-+.| .|+....-..+..... ..+...|.++|....+.|. .+. +-.+..+|. -..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A--~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILA--IYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHH--HHHHHHHHHhCCCcCCCH
Confidence 5566788887777776 3344333222222111 2356778888888777763 222 222222221 23367
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HH---Hh----cCCHHH
Q 009470 374 EDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQ-MF---AT----SKSTDM 445 (534)
Q Consensus 374 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~---~~----~g~~~~ 445 (534)
+.|..++++..++| .|...--...+..+.. ++.+.+.-.+..+.+.|.. ...+-...+. .. .. ..+.+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhH
Confidence 77888888887776 2222222222223333 6667776666666665533 2222221111 11 00 124455
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGM----GHWNNAYKYIREMIEE 491 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~ 491 (534)
+..++......| +......+...|... .+++.|...+.....+
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 666666665544 334444444433322 2466666666665553
No 275
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.26 E-value=6.3 Score=39.15 Aligned_cols=164 Identities=13% Similarity=0.200 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 321 NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFR 400 (534)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 400 (534)
|.....+++..+.....+.-+..+-.+|...| .+...|..++++|... ..++-..+|+++.+..+. |++.-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44444555555555555555555555665553 4455566666666555 445555566655555432 3333333444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCE-----PNTVTYNILMQMFATSKSTDMVLKLKKEMEE-NEVEPNVNTYRILITMYCG 474 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~ 474 (534)
.|.+ ++...+..+|.++...-++ .-...|.-+...- ..+.|....+...+.. .|..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 5555666666555432111 0112333333211 2445555555555543 2333333444555555666
Q ss_pred CCCHHHHHHHHHHHHHc
Q 009470 475 MGHWNNAYKYIREMIEE 491 (534)
Q Consensus 475 ~g~~~~A~~~~~~~~~~ 491 (534)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66677777766666554
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.99 E-value=3.3 Score=34.87 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=81.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCC
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNAS-TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV-TYNIL--MQMFATSKS 442 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~ 442 (534)
+.+.+..++|+.-|.++.+.|...-+. ....+.....+.|+...|...|+++-.....|-.. -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677777888888777776542221 22233445667888888888888886544333322 11111 123567888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
++....-.+-+...+-+.....-..|.-+-.+.|++..|.++|..+....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 88888877777665544444555667777778999999999999988765
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.81 E-value=0.21 Score=31.49 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
|..+...|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.78 E-value=0.31 Score=30.73 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
++..+...|.+.|++++|+++|+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667777777788888888888777753
No 279
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.75 E-value=8.8 Score=38.98 Aligned_cols=130 Identities=9% Similarity=0.112 Sum_probs=91.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+|.---.....+.+..+++.+... .|.--..|......=.+.|..+.+.++|++-.. |++.....|......++
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh
Confidence 3444443333334446667777777655 244455677777777888999999999999876 46666666766665544
Q ss_pred -hcCCHHHHHHHHHHhhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 230 -RKRRASEAQSFFDSLKDKF---EPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 230 -~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
..|+.+.....|+....-+ -.....|...|..-...+++.....++++.++.
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4578888888888876532 224567888888888899999999999999864
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.74 E-value=3.7 Score=34.58 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=61.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHHcCCh
Q 009470 263 CRAGNISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSI-TFNNL--MRVHVKASRT 338 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l--i~~~~~~g~~ 338 (534)
.+.+..++|+.-|.++.+.|..- .+.............|+..+|...|+++-.....|-.. -...+ .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556666666666666654331 11111222334455666666666666665543223221 11111 1124455666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 339 EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
+.+....+.+...+-+.....-..|.-+-.+.|++.+|...|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666665555554443333444455555556666666666666665543
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.25 E-value=4.6 Score=34.18 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=12.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 174 MKSRNVEITVDTFSILVRRYVRAGLA 199 (534)
Q Consensus 174 m~~~~~~~~~~~~~~li~~~~~~g~~ 199 (534)
+.+.+++++...+..+++.+.+.|++
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33344444444555555555555544
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.12 E-value=1.1 Score=41.23 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM-----AGIQPNVYTYSI 292 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 292 (534)
++..++..+...|+.+.+...++++....+-+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3444555556666666666666666665566666666666666666666666666665543 355555544433
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.02 E-value=11 Score=37.70 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=128.3
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 144 FVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI 223 (534)
Q Consensus 144 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 223 (534)
...+....-+++.+++.+........+..+|..-| -+.-.|..++..|..+ ..++-..+++++.+..+ -|.+.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34566678889999999999999999999999876 3567899999999988 66788899999988754 23333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEP------DVIVYTNLVRGWCRAGNISEAERVFREMKMA-GIQPNVYTYSIVIDA 296 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~ 296 (534)
|... ...++.+.+..+|.++..++-| -...|.-+...- ..+.+..+.+..++... |...-.+.+.-+-.-
T Consensus 138 La~~-yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADK-YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHH-HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444 4558899999999987765433 123455554421 35677777777777543 444455666667778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVH 332 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (534)
|....++++|++++..+.+.+ .-|+..-..++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 888999999999999887765 33555555555433
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.69 E-value=9 Score=36.11 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHc
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCR--CG----QITRAHDVFAEMLEV 316 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~A~~~~~~m~~~ 316 (534)
++...+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666555444332222111 11 234556666666654
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.62 E-value=1.9 Score=37.15 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEI--TVDTFSILVRRYVRAGLAAEAVHAFNRME 210 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (534)
..+..+.+.|.+.|+.+.|.+.|.++.+....+ -...+-.+|+.....|++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 356666777777777777777777766653222 24555666666666777776666666654
No 286
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.52 E-value=1.9 Score=32.64 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 201 EAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 201 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
+..+.++.+....+.|++.+....+++|.+.+++..|.++|+.++.+.......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455666666666777888888888888888888888888888777665544445655544
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.51 E-value=6.4 Score=33.95 Aligned_cols=92 Identities=16% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 434 MQMFATSKSTDMVLKLKKEMEENEVEPN--VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
...+...|++++|..-++........-+ ..+--.|.+.....|.+|+|+..++...+.+ + .......-.+++...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w--~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-W--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H--HHHHHHHhhhHHHHc
Confidence 3456666777777776666554311111 1111233445566677777777776665432 1 222233445667777
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009470 512 GQLQKHEELVEKMVDRG 528 (534)
Q Consensus 512 g~~~~a~~~~~~~~~~g 528 (534)
|+-++|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777776664
No 288
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.49 E-value=12 Score=37.15 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCCCCCHHH
Q 009470 424 EPNTVTY-NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC--GMGHWNNAYKYIREMIEEKCLKPGSSV 500 (534)
Q Consensus 424 ~p~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~p~~~~ 500 (534)
.++..++ +.+++.+.+.|-+.+|...+..+.... +|+...|..+|+.=. ..-+..-+.++++.|....| .++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3454444 567777788899999999999998873 677888888876321 22337788899999998876 67777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 501 YEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 501 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
|...+..=...|+.+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 87777766788999988888777654
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.36 E-value=11 Score=36.45 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP---NASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
....++..++..+.+.|.++.|...+..+...+... .......-+..+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667778888888999999999888887753211 344455556667778888888888887776
No 290
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.11 E-value=18 Score=38.23 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHc
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL-------AAEAVHAFNRMEEY 212 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 212 (534)
.+|-.|.++|++++|.++..+....- ......+-..+..|....+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 45667778899999988885554432 2333566667777765432 23444455555443
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.00 E-value=0.39 Score=28.68 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 465 YRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
|..|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666777777777666643
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.87 E-value=0.98 Score=41.65 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 009470 143 EFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN---VE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD 217 (534)
Q Consensus 143 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 217 (534)
|.+++..+....+.......+++.+...+-+++... .. -+..+|-.++. .-++++++.++..=...|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 555666677777777777888899888887776541 11 12333333333 3367799999988889999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYT 256 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 256 (534)
.++++.+++.+.+.+++.+|.++...|..+..-+....+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~nell~ 173 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENELLQ 173 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999988877654333333333
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.78 E-value=3.2 Score=31.12 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
.-++.+.++.+....+.|++.+....+++|-+.+++..|.++|+.++.+...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 34566667777777778888888888888888888888888888777655444455655443
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.66 E-value=3.5 Score=35.53 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEVGCEPN--SITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
+..+.+.|++.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555555555555555555444322221 222334444455555555555544444
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.21 E-value=0.57 Score=27.36 Aligned_cols=28 Identities=25% Similarity=0.524 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+|..+...|...|++++|+..|+++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3556666677777777777777777766
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.11 E-value=5.8 Score=33.14 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=62.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCC
Q 009470 399 FRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYN-ILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC-GMG 476 (534)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~-~~g 476 (534)
+..-.+.++.+++..+++.+.-. .|...... .-...+...|++++|..+++++.+.. |....-..|+..|. ..|
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC
Confidence 33445778999999999988765 34433322 22345678899999999999987753 33222233333232 333
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 477 HWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 519 (534)
+. +=..+-+++.+.+ +|..+ ..++..+....+...|.+
T Consensus 93 D~-~Wr~~A~evle~~---~d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DP-SWRRYADEVLESG---ADPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred Ch-HHHHHHHHHHhcC---CChHH-HHHHHHHHHhccccchhh
Confidence 32 2223344455543 33333 335555555555544443
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.86 E-value=8.6 Score=32.14 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKM 280 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.62 E-value=0.68 Score=27.62 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRM 209 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m 209 (534)
+|..|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556667777777777777777664
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.32 E-value=10 Score=32.10 Aligned_cols=30 Identities=3% Similarity=0.078 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRT 338 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 338 (534)
+++.+.+.+++++...+..+++.+.+.|++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333444445555555555555555555543
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.29 E-value=0.76 Score=26.67 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.|..+...+...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666677777777777776666
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.06 E-value=19 Score=34.84 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA---DTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
....+|..+++.+.+.|.++.|...+..+...+... +..+.-.-+..+...|+..+|...+++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355678889999999999999999999988754222 4455555677788899999999999988873
No 302
>PRK09687 putative lyase; Provisional
Probab=89.96 E-value=17 Score=34.05 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQI----TRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
|..+....+..+...|.. ++...+..+... +|...-...+.++...|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 444444445555544432 222233333322 2444444445555555542 3455555555333 33444444
Q ss_pred HHHHHHHHcCCh-----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 327 NLMRVHVKASRT-----EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRC 401 (534)
Q Consensus 327 ~li~~~~~~g~~-----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 401 (534)
..+.++...+.. ..+...+..... .++..+-...+.++.+.|+ ++|...+-.+.+. ++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443321 122333322222 3355555566666666665 4555666555553 344555555555
Q ss_pred HHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009470 402 ISKLG-DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 402 ~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 480 (534)
+.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+. .|...+-+..+.+ + .....+.++.+.|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 55543 23455555555554 34666666777777777774 4555544444433 2 234566777777774 6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 009470 481 AYKYIREMIEEKCLKPGSSVYEMVLQQLR 509 (534)
Q Consensus 481 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 509 (534)
|+..+.++.+. .||..+-...+.+|.
T Consensus 253 a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 77888887764 356666555555543
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.63 E-value=33 Score=36.90 Aligned_cols=226 Identities=10% Similarity=0.076 Sum_probs=119.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHHcCChhHHHHHHHHHHHc----CCCCChhhHHHHHH
Q 009470 298 CRCGQITRAHDVFAEMLEVGCEPNS-------ITFNNLMR-VHVKASRTEKVLQVYNQMKRL----GCEADTITYNFLID 365 (534)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~li~ 365 (534)
....++++|..++.++...-..|+. ..++.+-. .....|+++++.++.+..... -.......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4568899999988887654222221 13333322 234578888888887766543 23345666777788
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHhcCCh--hHHHHHHHHHHhCC--CC----CCHHHHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMI-----FRCISKLGDV--NGAHRMYGKMKDLK--CE----PNTVTYNI 432 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-----~~~~~~~g~~--~~A~~~~~~m~~~~--~~----p~~~~~~~ 432 (534)
+..-.|++++|..+..+..+..-+-+...+... ...+...|+. .+.+..|....... -. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999988877654222333333222 2335566633 23333333332210 01 12234444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCCHHHHHHHHH
Q 009470 433 LMQMFATS-KSTDMVLKLKKEMEENEVEPNVNT--YRILITMYCGMGHWNNAYKYIREMIEEKC---LKPGSSVYEMVLQ 506 (534)
Q Consensus 433 li~~~~~~-g~~~~a~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~p~~~~~~~l~~ 506 (534)
+..++.+. +...++..-++--......|-... +..|+......|+.++|...++++..... ..++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555442 122222222222222222222222 23567778889999999999888876431 1122222222222
Q ss_pred HH--HHcCCHHHHHHHHHH
Q 009470 507 QL--RRAGQLQKHEELVEK 523 (534)
Q Consensus 507 ~~--~~~g~~~~a~~~~~~ 523 (534)
.. ...|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 22 446888877776655
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=6.9 Score=36.35 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=26.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
+.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555545555555555555555555555555555555554443
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.10 E-value=0.59 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=15.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 247 KFEPDVIVYTNLVRGWCRAGNISEAE 272 (534)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (534)
..|.+..+|+.+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555666666666666666666554
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.86 E-value=0.64 Score=27.37 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=17.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 486 REMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHE 518 (534)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 518 (534)
+++++.. +-+...|..+...|...|++++|+
T Consensus 3 ~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4444432 334555666666666666666654
No 307
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.80 E-value=10 Score=33.75 Aligned_cols=138 Identities=12% Similarity=0.131 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009470 361 NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS 440 (534)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (534)
..-+..|.+.-++.-|....+++.+- ...-.+++ -|.+..+..--.++.+-....++.-+.....+++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhh-----HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 33444555555555555555444431 12222222 2444444444444444444455554555555544 4567
Q ss_pred CCHHHHHHHHHHHHH-CCC-----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 441 KSTDMVLKLKKEMEE-NEV-----------EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 441 g~~~~a~~l~~~m~~-~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
|+..+|+..++.-.. .|. .|.......++..| ..+++++|.+.+.++-+.| +.|.. ..+.+.+.+
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lg-ysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLG-YSPED-IITTLFRVV 282 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcC-CCHHH-HHHHHHHHH
Confidence 888888887776543 221 35555566666654 4578999999999988877 55543 344444444
Q ss_pred H
Q 009470 509 R 509 (534)
Q Consensus 509 ~ 509 (534)
.
T Consensus 283 K 283 (333)
T KOG0991|consen 283 K 283 (333)
T ss_pred H
Confidence 3
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.90 E-value=4.6 Score=40.89 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3455555544443332 3344555555555555555555544443
No 309
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.51 E-value=75 Score=38.42 Aligned_cols=321 Identities=10% Similarity=0.047 Sum_probs=151.1
Q ss_pred HHHHHHHccCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 153 EMINLAGKVRQFDLAWHFIDLM----KSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
.+..+-.+++.+.+|...++.- .+... ....|..+...|+..++++....+...-. .+...+ .-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~--~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKET--EEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHH--HHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHH
Confidence 3444555777888888877773 22211 12233344447888888877776665311 111222 233345
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSI-VIDALCRCGQITRAH 307 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~A~ 307 (534)
...|++..|..-|+.+.+..++....++-++......|.++.+....+-.... ..+....++. =+.+--+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 66788888888888888776666777887777777777777776655544432 1222222222 223335566666665
Q ss_pred HHHHHHHHcCCCCCHHHHHHH--HHHHHHcC--ChhHHHHHHHHHHHc--------CCCC-ChhhHHHHHHHHHHcCChH
Q 009470 308 DVFAEMLEVGCEPNSITFNNL--MRVHVKAS--RTEKVLQVYNQMKRL--------GCEA-DTITYNFLIDCHCKDGKLE 374 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g--~~~~a~~~~~~~~~~--------g~~~-~~~~~~~li~~~~~~g~~~ 374 (534)
.... .. +..+|... .....+.. +.-.-.+..+.+.+. +..- -...|..++..+.-..--.
T Consensus 1539 ~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5544 11 22223222 22222211 111111222222221 1111 0123333333322111111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 375 DAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAH-RMYGKMKDL----KC-EPNTVTYNILMQMFATSKSTDMVLK 448 (534)
Q Consensus 375 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~ 448 (534)
....+...=......-+..-|..-+..-....+..+-+ .+-+-+... +. .--..+|-...+...++|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11000000000000011111111111110111111111 111111111 11 1124567777777778899998888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 449 LKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 449 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
.+-...+.+ .| ..+--...-+...|+...|+.++++.++..
T Consensus 1692 all~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 777766654 22 334455566778899999999998888654
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.27 E-value=26 Score=34.69 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 187 SILVRRYVRAGLAAEAV-HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
..-|..-...|+.-.|- +++.-++...-.|+...+...| ....|+++.+.+.+.....-+.....+...+++...+.
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhch
Confidence 33344445567766554 4555566554456655544444 46789999998888776665555677888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
|++++|...-+.|....++ +...........-..|-++++.-.|+++....
T Consensus 371 ~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999998888876665 33333333333445677889988888887654
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.73 E-value=1.8 Score=26.41 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+++.+...|...|++++|.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777665
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.66 E-value=1.9 Score=24.98 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEY 212 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (534)
.+|..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666777777777777777777776653
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.46 E-value=49 Score=35.22 Aligned_cols=323 Identities=11% Similarity=0.067 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
..|....+++ +.|++..+.++...+..... .....|..+..... ...+++....+++-. +.+.....-...+..+
T Consensus 35 ~~f~~A~~a~-~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 35 QRYQQIKQAW-DNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 3455544444 56788888888777653322 12223333332221 224554444443322 1222223334455566
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH- 307 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~- 307 (534)
.+.+++....+++. ..+.+.......+.+....|+.++|......+=..|.. ....++.++..+.+.|.+....
T Consensus 110 a~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 110 ARREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HHccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHH
Confidence 67777776666332 23557777778888888999988887777777555433 4567788888888777665432
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH---------cCCCCChhhHHHHHHHH--HHcCChHH
Q 009470 308 -DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKR---------LGCEADTITYNFLIDCH--CKDGKLED 375 (534)
Q Consensus 308 -~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~g~~~~~~~~~~li~~~--~~~g~~~~ 375 (534)
+-++.+...| +...-..+...+. .+.....+.+..+.+ ..+.++...-..++.++ ....+.+.
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHH
Confidence 2233333333 3333333333221 111111111111111 11112221112122222 23345577
Q ss_pred HHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 376 AIKVLNSMVRKG-CNPN--ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKE 452 (534)
Q Consensus 376 A~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 452 (534)
|..++....... ..+. ..+...+.......+...+|...++...... .+......-+..-...++++.+...+..
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~ 337 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLAR 337 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 777777664442 1111 1223333333333322455666665543322 2444444445555567777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 453 MEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 453 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
|.... .-...-.--+.+++...|+.++|..+|+++.
T Consensus 338 L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 338 LPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 64422 2233333445556566777777777777764
No 314
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.42 E-value=21 Score=31.02 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 402 ISKLGDVNGAHRMYGKMKDLKCEPN----TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
+.+.|++++|..-|.+.++.-.... ...|..-..++.+.+.++.|+.-..+.++.+ +-....+..-..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 3445555555555555554321111 1223333344555556666655555555432 1111222222345556666
Q ss_pred HHHHHHHHHHHHH
Q 009470 478 WNNAYKYIREMIE 490 (534)
Q Consensus 478 ~~~A~~~~~~~~~ 490 (534)
+++|+.-++++.+
T Consensus 184 ~eealeDyKki~E 196 (271)
T KOG4234|consen 184 YEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666666
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.30 E-value=13 Score=37.77 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 403 (534)
.-+.++..+.+.|..++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3455666666777777766542 22211 1223456788888887776643 5567888999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 009470 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYK 483 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 483 (534)
+.|++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|. . |...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHH
Confidence 99999999988887764 44566667777887766666666666652 2 333346677888888888
Q ss_pred HHHHH
Q 009470 484 YIREM 488 (534)
Q Consensus 484 ~~~~~ 488 (534)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 77543
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.03 E-value=7.2 Score=33.94 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=3.4
Q ss_pred ChhHHHHHH
Q 009470 337 RTEKVLQVY 345 (534)
Q Consensus 337 ~~~~a~~~~ 345 (534)
+.+++..++
T Consensus 155 D~~Kt~~ll 163 (203)
T PF11207_consen 155 DPEKTIQLL 163 (203)
T ss_pred CHHHHHHHH
Confidence 333333333
No 317
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.01 E-value=51 Score=35.05 Aligned_cols=93 Identities=3% Similarity=-0.013 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHH
Q 009470 434 MQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK----CLKPGSSVYEMVLQQLR 509 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~p~~~~~~~l~~~~~ 509 (534)
+..+...|+...|...|..+... .+......+.....+.|.++.++.......... .+ |. .|...+..+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~--~~~~~~~~~a 487 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-PL--AWNDEFRRYT 487 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-Cc--chHHHHHHHH
Confidence 34456678888888888887764 244455556666667788887776654332210 01 21 2444555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC
Q 009470 510 RAGQLQKHEELVEKMVDRGFTAR 532 (534)
Q Consensus 510 ~~g~~~~a~~~~~~~~~~g~~~~ 532 (534)
+.-.++.+.-.--.-.+.+|.|+
T Consensus 488 ~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 488 SGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHcCCCHHHHHHHHHHhcCCCCC
Confidence 54455555443333445666664
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.00 E-value=18 Score=29.81 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKM 280 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++++|.++|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3344555555555555444
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.99 E-value=8.6 Score=28.90 Aligned_cols=60 Identities=8% Similarity=0.152 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
++.+-++.+....+.|+.....+.+++|.+.+++..|+++|+-...+. ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHHH
Confidence 455555556666667777777777777777777777777776665443 123445555543
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.76 E-value=24 Score=31.10 Aligned_cols=67 Identities=21% Similarity=0.097 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 249 EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|.-+.+||-|.-.+...|+++.|.+.|+...+....-+-...|.-| ++.--|++.-|.+-+-..-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 3345566666666677777777777777666543221211112111 122345666666555544443
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.67 E-value=16 Score=30.17 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=32.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 403 SKLGDVNGAHRMYGKMKDLKCEPNT---VTYNILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
...++.+++..+++.|.-. .|+. .++. ...+...|++++|.++++++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467777888888777654 2332 2333 233566788888888888877654
No 322
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.50 E-value=29 Score=31.68 Aligned_cols=196 Identities=11% Similarity=0.122 Sum_probs=96.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHHc
Q 009470 264 RAGNISEAERVFREMKMAGIQPN---VYTYSIVIDALCRCGQITRAHDVFAEMLEV---GC--EPNSITFNNLMRVHVKA 335 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~ 335 (534)
+..++++|+.-|++..+....-. ......++..+.+.|++++..+.+.+|..- .+ .-+..+.|.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34467777777777665422212 233445566677777777777766666421 00 11223334444333333
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
.+.+-..+.|+.- ++.+++.... +.--.|-..+...|...|++.+-.+++
T Consensus 119 ~~m~LLQ~FYeTT----------------------------L~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIl 168 (440)
T KOG1464|consen 119 KNMDLLQEFYETT----------------------------LDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKIL 168 (440)
T ss_pred hhhHHHHHHHHHH----------------------------HHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHH
Confidence 3332222222211 1111111111 111112233445555555666656666
Q ss_pred HHHHhC-----CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhCCCH
Q 009470 416 GKMKDL-----KC------EPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN-EVEPNVNTYRILITMY-----CGMGHW 478 (534)
Q Consensus 416 ~~m~~~-----~~------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~-----~~~g~~ 478 (534)
+++... |- .-=...|..-|++|...++-.....++++...- .--|..... .+|+-| .+.|++
T Consensus 169 kqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~f 247 (440)
T KOG1464|consen 169 KQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEF 247 (440)
T ss_pred HHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchH
Confidence 555321 10 011345777788888888888788888876542 223444433 334433 467888
Q ss_pred HHHHHHHHHHHH
Q 009470 479 NNAYKYIREMIE 490 (534)
Q Consensus 479 ~~A~~~~~~~~~ 490 (534)
++|-.-|-++-+
T Consensus 248 e~AhTDFFEAFK 259 (440)
T KOG1464|consen 248 EKAHTDFFEAFK 259 (440)
T ss_pred HHHHhHHHHHHh
Confidence 888655544443
No 323
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.45 E-value=13 Score=32.27 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEENEVEPN-----VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLR 509 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 509 (534)
-+.+.|++++|..-|.+..+. +++. ...|..-..++.+.+.++.|++-..+.++.+ |+ ......-..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHHHHHH
Confidence 356789999999999999886 2332 2344445567788999999999999998853 43 233344456788
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 009470 510 RAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 510 ~~g~~~~a~~~~~~~~~~g 528 (534)
+..++++|.+-++++.+..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 8999999999999988764
No 324
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.24 E-value=43 Score=33.45 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 471 MYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
.|...|++-.|.+.|.+.+.. +.-++..|..+..+|...
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 567889999999999988886 467788899998888543
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.04 E-value=6.7 Score=29.77 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
+..+-++.+....+.|+..+..+.+++|.+.+++..|+++|+....+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455555556666777777777777777777777777777777766542 22225665554
No 326
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.93 E-value=37 Score=32.52 Aligned_cols=80 Identities=9% Similarity=0.023 Sum_probs=36.1
Q ss_pred CCChhhHHHHHHHHHHcCC------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 354 EADTITYNFLIDCHCKDGK------------LEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
+-|..+|-.++..--..-. .+.-+.+++++.+.+. -+......++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666666643222111 2233344455444422 23444444455555555555555555555443
Q ss_pred CCCCCHHHHHHHHH
Q 009470 422 KCEPNTVTYNILMQ 435 (534)
Q Consensus 422 ~~~p~~~~~~~li~ 435 (534)
.. -+...|...+.
T Consensus 95 ~~-~~~~LW~~yL~ 107 (321)
T PF08424_consen 95 NP-GSPELWREYLD 107 (321)
T ss_pred CC-CChHHHHHHHH
Confidence 21 13444444444
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.71 E-value=1.8 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666777777777766665
No 328
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=84.65 E-value=34 Score=31.84 Aligned_cols=75 Identities=11% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK-MKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
.+...+++.....++-.++.--|+..+...+-.+.+...++.+-.++..+ ..+ ...+|..|+.++|..|+.+..
T Consensus 266 s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHH
Confidence 34445566655555444443345665444444444444444433332221 111 344688888888888887754
Q ss_pred H
Q 009470 447 L 447 (534)
Q Consensus 447 ~ 447 (534)
+
T Consensus 341 L 341 (412)
T KOG2297|consen 341 L 341 (412)
T ss_pred H
Confidence 3
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.62 E-value=15 Score=27.85 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=24.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 260 RGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
..+...|++++|..+.+.+ +.||...|-.|.. .+.|..+++...+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3444555555555544433 2455555444332 24455555555555555444
No 330
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.61 E-value=56 Score=34.28 Aligned_cols=75 Identities=8% Similarity=0.114 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 377 IKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEM 453 (534)
Q Consensus 377 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 453 (534)
...++++..+-.-.+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+.+.+..+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444443333445556666666666666666666665533211 1223344444455555555444444333
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.60 E-value=5.2 Score=37.54 Aligned_cols=52 Identities=17% Similarity=0.032 Sum_probs=25.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKM 418 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 418 (534)
-|.+.|.+++|...|...+... +-+.+++..-..+|.+.+.+..|+.--...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 3555555555555555554432 114455555555555555555444443333
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.59 E-value=16 Score=31.16 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 530 (534)
+++|.++|+++.+ ..|+..+|+.-+.... +|-++..++.++|..
T Consensus 96 F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVD---EDPNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHh---cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 6777788888877 4689888888776653 466666666666543
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.23 E-value=2.9 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.14 E-value=35 Score=31.59 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 467 ILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 467 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
.....|...|.+.+|.++.++.+.-. +.+...+..++..|...|+--.+..-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445555566666666555555532 233444455555555555544444444443
No 335
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.27 E-value=67 Score=34.10 Aligned_cols=374 Identities=11% Similarity=0.126 Sum_probs=184.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMKSR----NVEITVDTFSIL-VRRYVRAGLAAEAVHAFNRMEEYG---CAPDKIAFS 222 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~ 222 (534)
...++.++.+.+.-. |...+++..+. +..+-...|..+ +..+...+++..|++.++.+...- ..+-..++.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 345567777666665 88888776544 111223344444 333334479999999998876432 234444455
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhhc---c-------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-------C
Q 009470 223 IVISILC--RKRRASEAQSFFDSLKD---K-------FEPDVIVYTNLVRGWC--RAGNISEAERVFREMKM-------A 281 (534)
Q Consensus 223 ~ll~~~~--~~g~~~~A~~~~~~~~~---~-------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-------~ 281 (534)
.++.+.. +.+..+++.+..+.+.. . ..|...+|..+++.++ ..|+++.+...++++.+ .
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~ 261 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKS 261 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 5555444 34555666666665421 1 2345667777766554 56777676666555432 1
Q ss_pred C-C---C-------------------CCHHH---------HHHHHHH--HHHcCCHHHHHHHHHH-------HH-HcCCC
Q 009470 282 G-I---Q-------------------PNVYT---------YSIVIDA--LCRCGQITRAHDVFAE-------ML-EVGCE 319 (534)
Q Consensus 282 g-~---~-------------------p~~~~---------~~~ll~~--~~~~g~~~~A~~~~~~-------m~-~~~~~ 319 (534)
. . . +.... ..-++.+ ++..|..++|.+++++ .. .....
T Consensus 262 ~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~ 341 (608)
T PF10345_consen 262 PSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSA 341 (608)
T ss_pred ccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCC
Confidence 0 0 0 01111 1112222 2334544455555544 44 11111
Q ss_pred C--------CHHHHHHHHH---------HHHHcCChhHHHHHHHHHHHcCC-CC-----ChhhHHH--HHHHHHHcCChH
Q 009470 320 P--------NSITFNNLMR---------VHVKASRTEKVLQVYNQMKRLGC-EA-----DTITYNF--LIDCHCKDGKLE 374 (534)
Q Consensus 320 ~--------~~~~~~~li~---------~~~~~g~~~~a~~~~~~~~~~g~-~~-----~~~~~~~--li~~~~~~g~~~ 374 (534)
+ +...|...+. ..+-.+++..|...++.+.+..- .| ....+.. ..-.+...|+.+
T Consensus 342 ~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~ 421 (608)
T PF10345_consen 342 PSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE 421 (608)
T ss_pred CCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH
Confidence 1 1112222222 23447889999999998876421 11 1122222 333345679999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHH--HHHHHhcC--ChhH--HHHHHHHHHhC---CCCCCHHHHHHH-HHH
Q 009470 375 DAIKVLN--------SMVRKGCNPNASTFNMI--FRCISKLG--DVNG--AHRMYGKMKDL---KCEPNTVTYNIL-MQM 436 (534)
Q Consensus 375 ~A~~~~~--------~m~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--A~~~~~~m~~~---~~~p~~~~~~~l-i~~ 436 (534)
.|...|. .....+...+..++..+ +-.+...+ ..++ +.++++.+... ....+..++..+ +.+
T Consensus 422 ~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~ 501 (608)
T PF10345_consen 422 AALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLAT 501 (608)
T ss_pred HHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHH
Confidence 9999997 44455554444444332 11222222 2223 66677666431 111233344433 434
Q ss_pred HHhcC--CHHHHHHHHHHHH-HC--CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--CHHHHH----
Q 009470 437 FATSK--STDMVLKLKKEME-EN--EVEPN---VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP--GSSVYE---- 502 (534)
Q Consensus 437 ~~~~g--~~~~a~~l~~~m~-~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~---- 502 (534)
+.... ...++...+.+.. .. ....+ ..+++.+...+. .|+..+..+..........-.| ....|.
T Consensus 502 ~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~ 580 (608)
T PF10345_consen 502 YNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVAS 580 (608)
T ss_pred HhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 43222 1224443333221 11 11111 123333333344 6887776665554433221112 334453
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 503 -MVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 503 -~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
.+.+.+...|+.++|.+...+..+
T Consensus 581 ~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 581 GMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 334457788999999999887754
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.72 E-value=15 Score=32.02 Aligned_cols=80 Identities=8% Similarity=0.029 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCH
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKC--LKPGSSVYEMVLQQLRRAGQL 514 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 514 (534)
+.+.|+ ++|.+.|-.+...+.--+......+...|. ..+.++|++++.++.+... -.+|+..+..|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 457777777777665555555555555444 5677888888887776432 246778888888888888888
Q ss_pred HHHH
Q 009470 515 QKHE 518 (534)
Q Consensus 515 ~~a~ 518 (534)
++|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8775
No 337
>PRK13342 recombination factor protein RarA; Reviewed
Probab=82.44 E-value=56 Score=32.65 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYT 289 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~ 289 (534)
.+.+.|+.++..|.+.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 556666666666666655544333
No 338
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.95 E-value=4.6 Score=23.16 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 499 SVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
..+..+...+...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45778889999999999999999999875
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.74 E-value=2.6 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=14.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555566666666666666654
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.61 E-value=9.2 Score=30.29 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYT 256 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 256 (534)
+.++.+...++.|++......++++-+.+++..|.++|+-++.+..+....|-
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~ 122 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYP 122 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHH
Confidence 33444444555566666666666666666666666666655554443333333
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.55 E-value=49 Score=30.72 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 325 FNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
++...+.|..+|.+.+|.++.+...... +.+...+..++..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344455666666666666666665554 4555556666666666666555555555443
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.48 E-value=14 Score=32.53 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHH
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG--CEADTITYNFLIDC 366 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~ 366 (534)
.+.-+..+.+.+.+.+++...++-++.. +.|..+-..++..+|-.|++++|..-++-.-+.. ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667777888888888877776664 3455566677788888888888877666554432 23445566666654
No 343
>PRK09687 putative lyase; Provisional
Probab=80.40 E-value=51 Score=30.86 Aligned_cols=201 Identities=6% Similarity=-0.035 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCCCC
Q 009470 251 DVIVYTNLVRGWCRAGNI----SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ-----ITRAHDVFAEMLEVGCEPN 321 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~A~~~~~~m~~~~~~~~ 321 (534)
|...-...+.+++..|+. +++...+..+... .++...-...+.++...+. ..++...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444445555555542 3455555555322 2344444344444433321 1223333333332 224
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 322 SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDG-KLEDAIKVLNSMVRKGCNPNASTFNMIFR 400 (534)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 400 (534)
...-...+.++.+.++ +++...+-.+.+ .+|..+-...+.++.+.+ +..++...+..+... ++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHH
Confidence 4444455666666665 344555544443 244444444455554442 234555555555543 46666666777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
++.+.|+. .|...+-+..+.+ + .....+.++...|.. +|...+..+.+. .+|..+-...+.+|
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 77777763 4555554444432 2 233566667777774 566666666653 34655555555544
No 344
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.38 E-value=1.5e+02 Score=36.16 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=82.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.|-.+-..|+..+++|...-+...-. . . .....-|......|++..|...|+.+.+.+ ++....++.++....
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~-a--~---~sl~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml 1494 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRF-A--D---PSLYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSML 1494 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhh-c--C---ccHHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhh
Confidence 34444458999999998877776311 1 1 123344556677899999999999999865 344777888888888
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNL-VRGWCRAGNISEAERVFR 276 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 276 (534)
..|.++.++-..+-+.....+....++.+ +.+-.+.++++.......
T Consensus 1495 ~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1495 AIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred cccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88888888887776665555555555543 444567788877776655
No 345
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.35 E-value=11 Score=35.60 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=41.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.|.++|.+++|++.|....... +-+.+++..-..+|.+...+..|+.-.+........-+..|..-+.+-...|...+|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556666666666665544321 225555555555666665555554444433222111223333333333333444444
Q ss_pred HHHHHHHHH
Q 009470 272 ERVFREMKM 280 (534)
Q Consensus 272 ~~~~~~m~~ 280 (534)
.+-++...+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 444444433
No 346
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.01 E-value=51 Score=30.63 Aligned_cols=64 Identities=5% Similarity=0.123 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 283 IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV-GCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
..++..+...++..+++.+++.+-.++++..... +..-|...|..+|+...+.|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555666666666666666666555443 334455556666666666666555544444
No 347
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.96 E-value=61 Score=35.44 Aligned_cols=115 Identities=10% Similarity=0.092 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C-CCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHcCCCCChhhH---
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVGC--E-PNSITFNNLMRVHVKASRT--EKVLQVYNQMKRLGCEADTITY--- 360 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~-~~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~g~~~~~~~~--- 360 (534)
-|..|+..|...|+.++|+++|.+.....- . --...+..+++.+.+.+.. +-+++.-+...+..-......+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 377788888888888888888888876320 1 0112233344544444443 4444433333322100000000
Q ss_pred ---------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 361 ---------NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403 (534)
Q Consensus 361 ---------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 403 (534)
...+-.|+.....+-+..+++.+....-..+....+.++..|+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 1122335556666667777777766544455566666666554
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.17 E-value=24 Score=26.79 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 295 DALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
..+...|+|++|..+.+.+ +.||...|-++.. .+.|-.+++..-+..|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455667777777666555 3666666655543 35565555555555565555
No 349
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=78.82 E-value=58 Score=30.56 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=34.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR----AGLAAEAVHAFNRMEEYGCA 215 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 215 (534)
...+...|.++|..+.+.|.. .....|...|.. ..+..+|..+|++..+.|..
T Consensus 89 v~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 89 VSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 345677788888877666643 344445555544 33778888888888777743
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.79 E-value=15 Score=32.37 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=20.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 191 RRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFF 241 (534)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 241 (534)
..+.+.+...+|+...+.-.+.. +.|...-..+++.||-.|++++|..-+
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHH
Confidence 33444444444444444433322 222333334444444444444444333
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.62 E-value=1e+02 Score=33.36 Aligned_cols=264 Identities=14% Similarity=0.103 Sum_probs=142.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhC---------------CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSR---------------NVEIT-----VDTFSILVRRYVRAGLAAEAVHAFNRMEEYG 213 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~---------------~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 213 (534)
.|+-..+.|+++.|.++++..... .+|.+ ....-.-+.......++++|..+..++...-
T Consensus 366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 345555778888887777765111 11111 0111122233456789999999998886542
Q ss_pred CCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 214 CAPDKI-------AFSIVI-SILCRKRRASEAQSFFDSLKDK-----FEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 214 ~~~~~~-------~~~~ll-~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
..|+.. .++.+- ......|++++|.++.+..... .......+..+..+..-.|++++|..+..+..+
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 222221 222222 2234578999999988876543 445667788888888999999999998887765
Q ss_pred CCCCCCHHHHHHHH-----HHHHHcCCH--HHHHHHHHHHHHcC--CC----CCHHHHHHHHHHHHH-cCChhHHHHHHH
Q 009470 281 AGIQPNVYTYSIVI-----DALCRCGQI--TRAHDVFAEMLEVG--CE----PNSITFNNLMRVHVK-ASRTEKVLQVYN 346 (534)
Q Consensus 281 ~g~~p~~~~~~~ll-----~~~~~~g~~--~~A~~~~~~m~~~~--~~----~~~~~~~~li~~~~~-~g~~~~a~~~~~ 346 (534)
..-.-++..+.... ..+...|+. .+.+..+....... -+ +-..++..++.++.+ .+...++..-+.
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~ 605 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIE 605 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcch
Confidence 43233444433322 334556733 33333333332210 01 122344445555554 112222222222
Q ss_pred HHHHcCCCCChhh--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHH--HHHhcCChhHHHHHHHH
Q 009470 347 QMKRLGCEADTIT--YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP----NASTFNMIFR--CISKLGDVNGAHRMYGK 417 (534)
Q Consensus 347 ~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 417 (534)
........+-... +..|+.++...|+.++|...++++......+ +...-...+. .....|+.+++.....+
T Consensus 606 ~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 606 VGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222221122222 2367788889999999999999988763332 2222222222 23456777777776655
No 352
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.39 E-value=54 Score=29.98 Aligned_cols=153 Identities=7% Similarity=0.034 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSP--DLYHEMINLAGKVRQFDLAWHFIDLMKSR-----NVEITVDTFSILVRRYVRAGLA 199 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~ 199 (534)
....|+.-|+.+.+..|..-.. .....+|.+..+.|++++....+.++..- -..-+..+.|.+++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 5678888888888755544333 35677888999999999988888776431 1113456777777776666665
Q ss_pred HHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhccCC------------CCHHHHHHHHHHH
Q 009470 200 AEAVHAFNRMEEY-GCAPDK----IAFSIVISILCRKRRASEAQSFFDSLKDKFE------------PDVIVYTNLVRGW 262 (534)
Q Consensus 200 ~~A~~~~~~m~~~-g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~~~~li~~~ 262 (534)
+-..+.++.-.+. .-..+. .|-..+...|...|++.+..+++.++...+. .-..+|..=|+.|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5554444432110 000011 1223455566666777777777766643211 1123455556666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009470 263 CRAGNISEAERVFREMK 279 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~ 279 (534)
....+-.....+|++..
T Consensus 202 T~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhcccHHHHHHHHHHH
Confidence 66666665566666554
No 353
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.26 E-value=0.8 Score=37.86 Aligned_cols=83 Identities=10% Similarity=0.155 Sum_probs=46.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS 442 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 442 (534)
+|..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.... .-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4555556666667777777777655455566667777777777666666666551111 112344555556666
Q ss_pred HHHHHHHHHH
Q 009470 443 TDMVLKLKKE 452 (534)
Q Consensus 443 ~~~a~~l~~~ 452 (534)
++++..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6655555544
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.22 E-value=33 Score=31.57 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh---ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLK---DKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDAL 297 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (534)
...-|++++..+++.+++.+.-+.- +++||. +...-|-.|.|.+.+..+.++-.......-.-+...|..++..|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 3445788888888888777655432 334443 34444555777788888877777776542222344577766665
Q ss_pred HH-----cCCHHHHHHHH
Q 009470 298 CR-----CGQITRAHDVF 310 (534)
Q Consensus 298 ~~-----~g~~~~A~~~~ 310 (534)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 54 57777777666
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.20 E-value=32 Score=31.67 Aligned_cols=88 Identities=5% Similarity=-0.028 Sum_probs=55.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 009470 258 LVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHV---- 333 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~---- 333 (534)
=|++++..|++.+++.+.-+.-+.--+........-|-.|.|.|....+.++-..-.+..-.-+...|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4778888888888877766654432223344444555567788888887777777766533333444666655443
Q ss_pred -HcCChhHHHHHH
Q 009470 334 -KASRTEKVLQVY 345 (534)
Q Consensus 334 -~~g~~~~a~~~~ 345 (534)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 367777777665
No 356
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.09 E-value=58 Score=32.60 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=21.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
|...|+.-.|.+.|.+.... +.-+...|..|..+|.
T Consensus 345 ~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 44566666666666666553 3455666666666554
No 357
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.49 E-value=1e+02 Score=32.78 Aligned_cols=101 Identities=10% Similarity=0.064 Sum_probs=65.3
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEI---TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 231 (534)
++.+.+.+.+++|+++.+..... .+ -...+...|..+.-.|++++|-...-+|.. -+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 56677888999998887654433 22 346788889999999999999888888764 3445555555555555
Q ss_pred CCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHh
Q 009470 232 RRASEAQSFFDSLKDKF-EPDVIVYTNLVRGWCR 264 (534)
Q Consensus 232 g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~ 264 (534)
+..... +.-+..+- ..+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 544332 22233221 1355677777777776
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.43 E-value=13 Score=26.84 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=29.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPN--VNTYRILITMYCGMGHWNNAYKYIR 486 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 486 (534)
...+.++|+..|+...++-..+. -.++..++.+|+..|++++++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766432222 1355666777777777777766543
No 359
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.15 E-value=0.94 Score=37.44 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=27.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 294 IDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
+..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555554434445555566666666555555555544
No 360
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.56 E-value=8.4 Score=22.08 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 499 SVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
.+|..+...+...|+.++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35778889999999999999999998764
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.55 E-value=5.3 Score=25.15 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=10.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 009470 468 LITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~ 489 (534)
+..+|...|+.+.|.+++++.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444445555555555444443
No 362
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.02 E-value=72 Score=30.16 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m 383 (534)
.....||+.|+.+.|.+.+++-
T Consensus 109 ~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555544443
No 363
>PRK14700 recombination factor protein RarA; Provisional
Probab=75.95 E-value=70 Score=30.01 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 009470 179 VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNL 258 (534)
Q Consensus 179 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 258 (534)
+..+......++... .|+...|+..++.+.......+.. .+ ..+...+...+-.-.+..+...+.-+
T Consensus 63 ~~i~~~al~~ia~~a--~GDaR~aLN~LE~a~~~~~~~~~~----~i-------t~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 63 FKIDDGLYNAMHNYN--EGDCRKILNLLERMFLISTRGDEI----YL-------NKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred CCcCHHHHHHHHHhc--CCHHHHHHHHHHHHHhhccccCCC----cc-------CHHHHHHHHhHHHhcccCCcchhHHH
Confidence 445566666666543 677777887777754311000000 00 12222222222111222233344445
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCC
Q 009470 259 VRGWCR---AGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ-----ITRAHDVFAEMLEVGCE 319 (534)
Q Consensus 259 i~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~A~~~~~~m~~~~~~ 319 (534)
+.++.| -.|.+.|+-++.+|.+.|..|....-..++-++-.-|. ...|...++.....|.+
T Consensus 130 iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 130 LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 666654 46788888899999988887777766666666665553 23344444555555543
No 364
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.94 E-value=68 Score=29.85 Aligned_cols=23 Identities=0% Similarity=0.046 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
+...++..+++.+++.+-.++++
T Consensus 204 vi~~Il~~L~~~~dW~kl~~fW~ 226 (292)
T PF13929_consen 204 VIISILEILAESRDWNKLFQFWE 226 (292)
T ss_pred HHHHHHHHHHhcccHHHHHHHHH
Confidence 33333333333333333333333
No 365
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=75.93 E-value=65 Score=30.43 Aligned_cols=108 Identities=9% Similarity=0.126 Sum_probs=59.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 009470 369 KDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTY--NILMQMFATSKSTDMV 446 (534)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a 446 (534)
...-+.+|.+++++..+.+ ..+|+. -+.+...|.. .+.+.+. ..+..+| ..|..+-.+.|+..+|
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~------~da~~rR--Dtnvl~YIKRRLAMCARklGrlrEA 294 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQ------HEAQLRR--DTNVLVYIKRRLAMCARKLGRLREA 294 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccc------hhhhhhc--ccchhhHHHHHHHHHHHHhhhHHHH
Confidence 3445677888888877753 223331 1111222222 2222232 2244444 3344445567899999
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 447 LKLKKEMEENEVEPNV---NTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
.+.++.+.+. .|-. .....++.++....-+.+...++.+.-+.
T Consensus 295 ~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 295 VKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9988887654 2222 23456788888877777777776665443
No 366
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=75.88 E-value=80 Score=30.65 Aligned_cols=101 Identities=15% Similarity=0.229 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNI------------LMQMFATSKSTDMVLKLKKEMEENEV-EPNV 462 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~------------li~~~~~~g~~~~a~~l~~~m~~~~~-~p~~ 462 (534)
..+...+-..|++++|..++.+.. ..||.+ =++.|...+++-.|.-+-+++..+-+ .||.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 445667778899999998887653 223322 24567777888888877777755432 2332
Q ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 009470 463 -----NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEM 503 (534)
Q Consensus 463 -----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 503 (534)
..|+.+++.....+.|=++.+.++...+.+.+.-|+.-|..
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 45888888888999999999999999887766665544443
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.80 E-value=57 Score=29.09 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=14.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcC
Q 009470 470 TMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
....+.|++++|.++|.+++..+
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCC
Confidence 34456666666666666666654
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.69 E-value=83 Score=31.33 Aligned_cols=182 Identities=8% Similarity=0.061 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHhc
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI--AFSIVISILCRKRRASEAQSFFDSLKDKF-EPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 265 (534)
.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-.... ..+. .-.+.+...+..
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~ 112 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYK-DGMTPLHLATIL 112 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccC-CCCCHHHHHHHh
Confidence 334444556553 333334445433321 11233445566777776666555321100 0000 011233344555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYT--YSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS---ITFNNLMRVHVKASRTEK 340 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~ 340 (534)
|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+ .+.|..++. .-.+ .+...+..|+.+
T Consensus 113 ~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~T-pL~~A~~~g~~e- 182 (413)
T PHA02875 113 KKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCGCT-PLIIAMAKGDIA- 182 (413)
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCCC-HHHHHHHcCCHH-
Confidence 6653 4444445555544321 11233444566665544333 333433221 1112 233344556544
Q ss_pred HHHHHHHHHHcCCCCChhh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 009470 341 VLQVYNQMKRLGCEADTIT---YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA 392 (534)
Q Consensus 341 a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 392 (534)
+.+.+.+.|..++... ...++...+..|+.+ +.+.+.+.|..++.
T Consensus 183 ---iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 183 ---ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred ---HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3344455555544322 123444344556554 34444455555443
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.30 E-value=37 Score=29.07 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 303 ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
+++|.+.|+...+. .|+...|+.-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 44455555555544 677777776666542 3555555555543
No 370
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.18 E-value=6.4 Score=22.30 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 501 YEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 501 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+..+..++.+.|++++|.+.++++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677888999999999999999875
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.08 E-value=27 Score=27.80 Aligned_cols=60 Identities=10% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
+..+-++.+....+.|+......-+++|.+.+++..|.++|+-...+- .+....|..++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Confidence 345556666677788888888888888888888888888888776653 233334555543
No 372
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=1.4e+02 Score=32.63 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVE 522 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 522 (534)
.|.-.+.|.++.+---..|..++..-...+...|++..|++++.++++..+-.++...|..++..+...|.- .-..+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 344455555554421133556666666677788999999999999999776778888888888888887754 4444445
Q ss_pred HHHH
Q 009470 523 KMVD 526 (534)
Q Consensus 523 ~~~~ 526 (534)
.+..
T Consensus 1291 ~~~~ 1294 (1304)
T KOG1114|consen 1291 NWMR 1294 (1304)
T ss_pred hhee
Confidence 4443
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.41 E-value=5.2 Score=21.65 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 009470 258 LVRGWCRAGNISEAERVF 275 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~ 275 (534)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444433
No 374
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.27 E-value=78 Score=29.31 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=90.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHH----HHHcCCCCCHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKMAGIQPNVYT-------YSIVIDALCRCGQITRAHDVFAE----MLEVGCEPNSITFN 326 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~ 326 (534)
+.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|++...-+.... |.+..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34445556666666666666666665544333 23345556666655443333321 22211111222333
Q ss_pred HHHHHHHH-cCChhHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCCCHHHHH
Q 009470 327 NLMRVHVK-ASRTEKVLQVYNQMKRLGCEA-----DTITYNFLIDCHCKDGKLEDAIKVLNSM----VRKGCNPNASTFN 396 (534)
Q Consensus 327 ~li~~~~~-~g~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~ 396 (534)
+++..+-. ...++..+.+.....+..... ....-.-+|..+.+.|.+.+|..+...+ .+.+-+++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 33333322 223344444443333221111 1112234677788888888888766543 3334344443322
Q ss_pred HH-HHHHHhcCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 009470 397 MI-FRCISKLGDVNGAHRMYGKMK----DLKCEPNTVTYNILMQM--FATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 397 ~l-~~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~li~~--~~~~g~~~~a~~l~~~m~~ 455 (534)
.+ -.+|-+.+++.++..-+...+ ..-++|....---|+.+ .|...++..|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 22 234444444444444333332 12244444333334433 3445566666666655544
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.94 E-value=91 Score=29.90 Aligned_cols=80 Identities=8% Similarity=-0.010 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR---AGNISEAERVF 275 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 275 (534)
.+.-+.++++..+.+ +.+.......+..+.+..+.++..+.++++....+.+...|...+..... .-.++...++|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345556677766653 34555666677777777777777777777777666677777776665544 22355555555
Q ss_pred HHHH
Q 009470 276 REMK 279 (534)
Q Consensus 276 ~~m~ 279 (534)
.+..
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 5443
No 376
>PRK10941 hypothetical protein; Provisional
Probab=72.73 E-value=66 Score=29.88 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 009470 430 YNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLR 509 (534)
Q Consensus 430 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 509 (534)
.+.+-.+|.+.++++.|.++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++..+-.|+.......+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3455667788889999999988888753 444555655566688889999998888888886544556666655555554
Q ss_pred H
Q 009470 510 R 510 (534)
Q Consensus 510 ~ 510 (534)
.
T Consensus 263 ~ 263 (269)
T PRK10941 263 Q 263 (269)
T ss_pred h
Confidence 3
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.94 E-value=11 Score=23.80 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 378
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.87 E-value=17 Score=24.00 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 467 ILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 467 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
.+.-++.+.|++++|.++.+.+++ +.|+..-...|-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~---~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE---IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH---HTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh---hCCCcHHHHHHH
Confidence 344577888889999888888888 467765554443
No 379
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.28 E-value=45 Score=25.73 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=6.0
Q ss_pred HcCCHHHHHHHHHHHH
Q 009470 299 RCGQITRAHDVFAEML 314 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~ 314 (534)
+.|--+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 3344444444444333
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.69 E-value=24 Score=30.85 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=34.9
Q ss_pred hcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 439 TSKSTDMVLKLKKEMEE-NEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
..++.+......+.+.+ ....|+..+|..++.++...|+.++|.+..+++..-
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444433333332 124688888888888888888888888888888774
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.92 E-value=35 Score=34.84 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
+-.++..|.....|--...|...-.|-..|+...|.+.+.........-..+....|.....+.|...+|..++......
T Consensus 592 ~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~ 671 (886)
T KOG4507|consen 592 GSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI 671 (886)
T ss_pred HHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 33444444443333333334333334445677777766666544322222233444555566666666777776666554
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 009470 317 GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLI 364 (534)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 364 (534)
. ....-++..+.+++....+++.|++.|++..+.. +.+...-+.|.
T Consensus 672 ~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 672 N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 4 3344455566667777777777777777766553 23334444443
No 382
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.67 E-value=85 Score=28.25 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=14.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCE 319 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~ 319 (534)
-...+++.+|+++|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556677777777776655433
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.63 E-value=13 Score=25.51 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 465 YRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
--.+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556667777777777777666654
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.46 E-value=1.6e+02 Score=31.29 Aligned_cols=184 Identities=14% Similarity=0.223 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHH-ccCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHH
Q 009470 129 LQVLSFFNWVTARPEFVHSP--DLYHEMINLAG-KVRQFDLAWHFIDLMKSRNVEITV-----DTFSILVRRYVRAGLAA 200 (534)
Q Consensus 129 ~~al~~f~~~~~~~~~~~~~--~~~~~li~~~~-~~~~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~ 200 (534)
..|++.++-+.+.....|.. .++-.+..+|. ...+++.|...+++.....-.++. ..-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45677777776533333322 25667777777 678999999999976544322221 12335566666666655
Q ss_pred HHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHH--hcCCHH
Q 009470 201 EAVHAFNRMEEY----GCAPDKIAFSIV-ISILCRKRRASEAQSFFDSLKDK----FEPDVIVYTNLVRGWC--RAGNIS 269 (534)
Q Consensus 201 ~A~~~~~~m~~~----g~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li~~~~--~~g~~~ 269 (534)
|....++..+. +..+-...|..+ +..+...++...|.+.++.+... ..+-..++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 98888886542 222223334444 33333448999999999887542 3344455555555544 446567
Q ss_pred HHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 009470 270 EAERVFREMKMAG---------IQPNVYTYSIVIDALC--RCGQITRAHDVFAEM 313 (534)
Q Consensus 270 ~A~~~~~~m~~~g---------~~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~m 313 (534)
++.+.++++.... ..|-..+|..+++.++ ..|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777764321 1234566777766555 567776776665554
No 385
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.42 E-value=10 Score=20.53 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 465 YRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
|..+...+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34445555556666666666655554
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.87 E-value=99 Score=30.78 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=37.9
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIV--YTNLVRGWCRAGNISEAERVFREMKMAGIQPNVY--TYSIVIDALCRCGQ 302 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~ 302 (534)
..+..|+.+-+..+++. +..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 8 ~A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 8 DAILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556777666555542 33333322 234455556667764 334444555544432 11233445566777
Q ss_pred HHHHHHHH
Q 009470 303 ITRAHDVF 310 (534)
Q Consensus 303 ~~~A~~~~ 310 (534)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 66554444
No 387
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.81 E-value=1.7e+02 Score=31.05 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 231 (534)
.-.+|-.|.+.|++++|.++..+..+. .......+...+..++..
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 445778888999999999998666543 345556677777777764
No 388
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.72 E-value=88 Score=27.28 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=63.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYN-----ILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
+...+...|++++|+..++..... +....+. .|.+.....|.+|+|+.+++...+.++ .......-.+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345677888888888888877653 2223332 345567778899999998888776543 223344456678
Q ss_pred HhCCCHHHHHHHHHHHHHcC
Q 009470 473 CGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~ 492 (534)
...|+-++|+.-|++.++..
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 88999999999999988864
No 389
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=65.55 E-value=1e+02 Score=27.72 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=65.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.....+++|.+.-+|..|-...+++.+. .--...+-.|.+..+.+--.++.+-.+..+++.+...+..++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiEP------IQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIEP------IQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhhh------HHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 4555667777777776666555554432 011122333444444444444555455556666666555554 34
Q ss_pred hcCCHHHHHHHHHHhhcc-------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 230 RKRRASEAQSFFDSLKDK-------------FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
..|+..+|+.-++.-..+ ..|.+.....++..+ ..+++++|.+++.++-+.|..|
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCH
Confidence 577777777666653322 123344444444332 2345555555555555555543
No 390
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.28 E-value=1.2e+02 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=17.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009470 330 RVHVKASRTEKVLQVYNQMKRLGCEAD 356 (534)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~g~~~~ 356 (534)
..-...+++.+|+++|+++....+..+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344556777778888877766544333
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.22 E-value=34 Score=34.95 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=57.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 009470 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYK 483 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 483 (534)
..|+...|.+.+.........-..+....|.+...+.|....|-.++.+..... .....++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 456777777777766543222222334455566666677777777777666543 3344566777788888888888888
Q ss_pred HHHHHHHcC
Q 009470 484 YIREMIEEK 492 (534)
Q Consensus 484 ~~~~~~~~~ 492 (534)
.|+++++..
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 888888754
No 392
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.52 E-value=42 Score=35.22 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 009470 144 FVHSPDLYHEMINLAGKVRQFDLAWHFIDL 173 (534)
Q Consensus 144 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 173 (534)
..+++.-|+ .+..+.-.|.++.|.+++..
T Consensus 145 ~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 145 YEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp CSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred CccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 344567776 57777778999999988844
No 393
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.25 E-value=89 Score=25.80 Aligned_cols=81 Identities=12% Similarity=0.214 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCChhhHHHH
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEVG-----CEPNSITFNNLMRVHVKASR-TEKVLQVYNQMKRLGCEADTITYNFL 363 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~l 363 (534)
.|.++.-....+++...+.+++.+.... -..+...|..++.+..+..- .--+..+|..|.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555666666666665553211 02244456666666644444 33455666666666666666667666
Q ss_pred HHHHHHc
Q 009470 364 IDCHCKD 370 (534)
Q Consensus 364 i~~~~~~ 370 (534)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665544
No 394
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.76 E-value=1.2e+02 Score=27.08 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCCCC---C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 479 NNAYKYIREMIEEKCLKP---G-SSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 479 ~~A~~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 530 (534)
..|++.|.+..+....+. + ..+...+.....+.|+.++|.+.+.+++..+-.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 456666666665442211 1 223334455566777777777777777766543
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.65 E-value=63 Score=23.89 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 519 (534)
+.++++.+.++|+- +......+-.+-...|+.+.|.+++..+. .| |+ .|..++.++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~~--aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK---EG--WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---Cc--HHHHHHHHHHHcCchhhhhc
Confidence 45666777776632 33333333333335578888888888776 43 33 47778888887777665544
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.60 E-value=48 Score=24.90 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=16.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+.......|++++|++.+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444556678888888887777663
No 397
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=61.55 E-value=1.6e+02 Score=28.65 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 255 YTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
-..|...+-..|++++|..++.+.
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhc
Confidence 345667777888888888887665
No 398
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.32 E-value=1.5e+02 Score=27.95 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=37.9
Q ss_pred CChhHHHHHHH-HHHhCCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 406 GDVNGAHRMYG-KMKDLKCEPNTV----TYNILMQMFATSKSTD-MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 406 g~~~~A~~~~~-~m~~~~~~p~~~----~~~~li~~~~~~g~~~-~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
..+++.....+ +|++.+ -|+.. .|..++.+--.+++-+ -|.+.++.+ .+|..|+.++|..|+.+
T Consensus 269 ~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSE 338 (412)
T ss_pred CCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHH
Confidence 34555555444 555555 45654 4677776544332221 133333333 46888999999999877
Q ss_pred HHH
Q 009470 480 NAY 482 (534)
Q Consensus 480 ~A~ 482 (534)
-++
T Consensus 339 L~L 341 (412)
T KOG2297|consen 339 LEL 341 (412)
T ss_pred HHH
Confidence 554
No 399
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=61.18 E-value=2.6e+02 Score=30.83 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 373 LEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD-LKCEPNTVTYNILMQMFATSKSTDMVLKLKK 451 (534)
Q Consensus 373 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 451 (534)
.+.-.+.|.++.+---.-|..++..-...+...|++..|.+++.++.+ .|-.++...|..+++.+...|-- ....+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 344445555554432223555555555666677778888877777654 44456666676666666655543 3333444
Q ss_pred HH
Q 009470 452 EM 453 (534)
Q Consensus 452 ~m 453 (534)
.+
T Consensus 1291 ~~ 1292 (1304)
T KOG1114|consen 1291 NW 1292 (1304)
T ss_pred hh
Confidence 43
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=60.93 E-value=1.3e+02 Score=28.74 Aligned_cols=80 Identities=19% Similarity=0.391 Sum_probs=47.3
Q ss_pred HHHhcCCHHHHHHHHHHhhcc----CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH-HHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDK----FEPDVIVYT--NLVRGWCRAGNISEAERVFREMKM-----AGIQPNVYT-YSIVI 294 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~-~~~ll 294 (534)
..-+.++.++|+++++++.+. -.|+.+.|. .+++.+...|+.+++.+.+++..+ .|+++++.+ |+.+-
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 334455777777777776543 344555543 455666677888888888887766 466665433 44444
Q ss_pred HHHH-HcCCHHHH
Q 009470 295 DALC-RCGQITRA 306 (534)
Q Consensus 295 ~~~~-~~g~~~~A 306 (534)
.-|. +.|++...
T Consensus 164 sqYyk~~~d~a~y 176 (380)
T KOG2908|consen 164 SQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHhHHHH
Confidence 4333 34554433
No 401
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.88 E-value=2.5e+02 Score=31.78 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPN----VYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
-|..+++.+-+.+-.+++.++-...++. ..++ ..+++.+.+.....|.+-+|.+.+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 3555666666666666666665555543 1111 233455555555566665555443
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.97 E-value=28 Score=23.83 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=10.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~ 384 (534)
+|.+|...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555544444443
No 403
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=59.73 E-value=1.2e+02 Score=26.40 Aligned_cols=83 Identities=11% Similarity=0.166 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------C
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC--------------E 319 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--------------~ 319 (534)
.|...+..-++.-+-+++-+.+-- ..--.++-.|-+..++.+..++++.|.+..+ .
T Consensus 109 PFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~a 178 (233)
T PF14669_consen 109 PFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLA 178 (233)
T ss_pred CHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccC
Confidence 355555555555444443332211 1122455567777778888888877765321 1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 320 PNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
+--...|.....+.+.|.+|.|..+++
T Consensus 179 srCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 179 SRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred chhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 223344555556666666666666665
No 404
>PRK12798 chemotaxis protein; Reviewed
Probab=59.39 E-value=1.9e+02 Score=28.62 Aligned_cols=223 Identities=11% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH-HHHcCChHHHHHHHHHHHHC
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC-HCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 386 (534)
++++.+...+..++...--.-.-.-.-.|+.+++.+.+..+.....++....|-.|+.+ .....+..+|+++|++..-.
T Consensus 98 ~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl 177 (421)
T PRK12798 98 ATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL 177 (421)
T ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 387 --GCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD--LKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV 462 (534)
Q Consensus 387 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 462 (534)
|.-........-+....+.|+.+++..+-.+... ..-.--...+..+...+.+.++-..-..+.+.+....-.--.
T Consensus 178 aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~ 257 (421)
T PRK12798 178 APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQR 257 (421)
T ss_pred CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHH
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCC
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA-----GQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
..|..+.+.-.-.|+.+-|...-++... +......-......|... .+.+++.+.+..+-...+.+..
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~---L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALK---LADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHH---hccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
No 405
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.19 E-value=1.5e+02 Score=27.55 Aligned_cols=25 Identities=4% Similarity=0.138 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNS 382 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~ 382 (534)
..+..+...||+.++.+.+.+..++
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3344444445555555544444433
No 406
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.15 E-value=1.6e+02 Score=27.61 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHhCC
Q 009470 407 DVNGAHRMYGKMKDLK 422 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~ 422 (534)
+.++|...|.+..+.|
T Consensus 206 d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 206 DLKKAFRWYKKAAEQG 221 (292)
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4555555555555544
No 407
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.88 E-value=53 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777776665
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.67 E-value=1.9e+02 Score=28.54 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCChhHHHHHHHHHHh
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRKGCNPNAS--TFNMIFRCISK--LGDVNGAHRMYGKMKD 420 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~~~~~--~g~~~~A~~~~~~m~~ 420 (534)
+..+.+.+++..|.++++++..+ +.++.. .+..+..+|.. .-++++|.+.++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455788888888888888876 433333 34444455543 4466777777777654
No 409
>PRK09857 putative transposase; Provisional
Probab=58.61 E-value=99 Score=29.17 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=22.4
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI 283 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 283 (534)
.+.++.++..++++.+.+..+......-+++.-+.+.|.-+++.++..+|...|+
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred hhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444444444444333222222333344444444444444444444444443
No 410
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.47 E-value=2.1e+02 Score=28.88 Aligned_cols=348 Identities=10% Similarity=0.060 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHccC-ChHHHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 148 PDLYHEMINLAGKVR-QFDLAWHFIDLMKSR--NVEI-TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI 223 (534)
Q Consensus 148 ~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~--~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 223 (534)
-+.+..+.+.+.... .++.+..++.+..+. +++. +-....-++..+.-..++..|.+++.---+.. .+--..|..
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr 166 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLR 166 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHH
Confidence 357888888888776 888899898887765 3321 11222345667777889999988854322211 222233333
Q ss_pred HHHH------HHhcCCHH---HHHHHHHHhhccCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 009470 224 VISI------LCRKRRAS---EAQSFFDSLKDKFEPDVIV--------YTNLVRGWCRAGNISEAERVFREMKMA---GI 283 (534)
Q Consensus 224 ll~~------~~~~g~~~---~A~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 283 (534)
++.. +....+.. .+.....++.+...+|..- .+.-+..|.-.|+...+...++++.+. +-
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 3222 22233444 4444445555555555432 222344566778888888887776542 11
Q ss_pred ------------CCCHHHHHHHHH----HH---------HHcCCHHHHHHHHHHHHHc----CCCC-CHHHH--------
Q 009470 284 ------------QPNVYTYSIVID----AL---------CRCGQITRAHDVFAEMLEV----GCEP-NSITF-------- 325 (534)
Q Consensus 284 ------------~p~~~~~~~ll~----~~---------~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~-------- 325 (534)
.|....+..+.. ++ .-.|-+++|.++-++++.. ...+ ....+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 122222221111 10 1234555555555544321 1111 12221
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCh-------hhHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009470 326 NNLMRVHVKASRTEKVLQVYNQMKRLGC-EADT-------ITYNFLI-DCHCKDGKLEDAIKVLNSMVRKGCNPNASTFN 396 (534)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~~-------~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 396 (534)
..++.+-.-.|+..+|++-..+|.+.-. .|.. .....++ ..++..|.++.|..-|....+.-...|...+.
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1122223347999999999988876421 2221 1122233 33457789999999999888764344444432
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--------HHHHH--HHhcCCHHHHHHHHHHHHHCCCCCC---
Q 009470 397 --MIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYN--------ILMQM--FATSKSTDMVLKLKKEMEENEVEPN--- 461 (534)
Q Consensus 397 --~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--------~li~~--~~~~g~~~~a~~l~~~m~~~~~~p~--- 461 (534)
.+...|.+.|+.+.-.++++.+-. ++..++. .++.+ ....+++.+|...+.+-.+..-.-|
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence 345567777777766666665532 2222211 11222 2357899999999988765321111
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHH
Q 009470 462 --VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSV 500 (534)
Q Consensus 462 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 500 (534)
......+...+...|+..++.+..+-.++-..--||..+
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 122233344556678888888877665543323466543
No 411
>PRK10941 hypothetical protein; Provisional
Probab=58.36 E-value=90 Score=28.99 Aligned_cols=57 Identities=9% Similarity=-0.113 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+-.+|.+.++++.|++..+.+..-.|.|..-+.--.-.|.+.|.+..|..-++...+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 334445555555555555555544444444444444455555555555555554443
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.40 E-value=62 Score=24.25 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=34.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCC--CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 472 YCGMGHWNNAYKYIREMIEEKCL--KPG-----SSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~--~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
..+.|++.+|.+.+.+..+.... .+. ......+.......|+.++|.+.+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678888887666665543211 111 112223445567789999999999988764
No 413
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=57.06 E-value=1.3e+02 Score=28.34 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=24.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
....+.++..+..+.++.+. ....-...++.+...|++.+|++++.+..+
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~-----~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK-----TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33344444444444444443 223334445555566666666666665543
No 414
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.96 E-value=1.1e+02 Score=25.38 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=58.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNV-----EITVDTFSILVRRYVRAGL-AAEAVHAFNRMEEYGCAPDKIAFSI 223 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ 223 (534)
..|.++.-+...+++.....+++.+..... ..+-..|..++.+..+..- ---+..+|+.|++.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 357777777777888888888777643211 2345678888888866655 4456778888888778888888888
Q ss_pred HHHHHHhc
Q 009470 224 VISILCRK 231 (534)
Q Consensus 224 ll~~~~~~ 231 (534)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88876554
No 415
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.91 E-value=33 Score=24.78 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=37.3
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 474 GMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVE 522 (534)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 522 (534)
...+.++|+..++.++++..-.++ -.++..++.+++..|++.++.++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999987532222 2456778889999999998877643
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.80 E-value=49 Score=30.29 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 466 RILITMYCGMGHWNNAYKYIREMIEEK----CLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
..+...|.+.|++++|.++|+.+.... -..+...+...+..+..+.|+.++...+.=++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345566777888888888887775422 122333445556667777788877776655443
No 417
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.75 E-value=91 Score=24.15 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 197 GLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFR 276 (534)
Q Consensus 197 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 276 (534)
...++|..+.+.+...+. ....+--+-+..+.+.|++++| +..-.....||...|-+|. -.+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 346677777777776542 2333333444556677777777 2222233455666665443 346677777777777
Q ss_pred HHHHCC
Q 009470 277 EMKMAG 282 (534)
Q Consensus 277 ~m~~~g 282 (534)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665543
No 418
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.58 E-value=2.1e+02 Score=28.20 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDK---FEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
..+.-+.+.|..+|+++.|.+.|-+..+- .+..+..|-.+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45667778888888888888888886543 223445566667777777888777777766654
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.85 E-value=2.1e+02 Score=28.12 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=29.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSR--NVEITVDTFSILVRRYVRAGLAAEAVHAFNRME 210 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (534)
.+.-+.+-|..+|+++.|++.|-+.+.- ..+..+..|-.+|..-.-.|+|........+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 4445555555556666665555553322 112223444445555555555555555444443
No 420
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.56 E-value=1.8e+02 Score=27.16 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----cCCCCChhhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCH--
Q 009470 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKR----LGCEADTITYNFL-IDCHCKDGKLEDAIKVLNSMVRKGCNPNA-- 392 (534)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 392 (534)
-....+..+...|++.++.+.+.++.++..+ .|.+.|.....+- .-.|....-+++-++..+.|.++|...+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3456788888999999999999888776543 4666665443332 23344555577888888899988754332
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 393 --STFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 393 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
.+|..+. +....++.+|-.++-+...
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2232222 2334566777766666543
No 421
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=54.38 E-value=1.6e+02 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRME 210 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~ 210 (534)
.-|......|+.++|++..+.+-
T Consensus 69 ~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 69 LQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHHhccHHHHHHHHHHhC
Confidence 34445556666666666555553
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.36 E-value=1e+02 Score=26.63 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~ 455 (534)
.|.+.|.+++|.++++...+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555443
No 423
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.10 E-value=1.8e+02 Score=26.84 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 250 PDVIVYTNLVRGWCRAGNISEAERVF 275 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (534)
.|......+...|.+.|++.+|+..|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 36666777777777777777776555
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.02 E-value=48 Score=21.25 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=13.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 195 RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344444444444444444444444444433
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.95 E-value=69 Score=27.91 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 424 EPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN 456 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 456 (534)
.|+..+|..++..+...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777777777777777766653
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.86 E-value=30 Score=32.27 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI 223 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 223 (534)
...|+..|....+.||+++|++++++.++.|+.--..+|-.
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34567899999999999999999999999887554455443
No 427
>PRK09857 putative transposase; Provisional
Probab=53.27 E-value=85 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=13.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 503 MVLQQLRRAGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 503 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 530 (534)
++..-+...|.-+++.++..+|+..|+.
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444444444455555555555543
No 428
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.94 E-value=29 Score=19.21 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
.+.|..+|+++....+.+...|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 444444444444444434444443
No 429
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.84 E-value=2e+02 Score=26.84 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHH----cCCCCChhhHHH
Q 009470 292 IVIDALCRCGQITRAHDVFAEM----LEVGCEPNSITFNNL-MRVHVKASRTEKVLQVYNQMKR----LGCEADTITYNF 362 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~----~g~~~~~~~~~~ 362 (534)
.++..+.+.|++.+|+.+...+ .+.+-+++..+...+ -.+|...++..++..-+..... .-++|....---
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4566777777777777665543 333334443332222 1234444444443333322221 113333333333
Q ss_pred HHHH--HHHcCChHHHHHHHHHHHH
Q 009470 363 LIDC--HCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 363 li~~--~~~~g~~~~A~~~~~~m~~ 385 (534)
|+.+ .|...++.-|..+|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 3332 2444556666666655554
No 430
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.24 E-value=1.8e+02 Score=26.33 Aligned_cols=81 Identities=10% Similarity=-0.025 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 196 AGLAAEAVHAFNRMEEYGCAPDKIA-FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERV 274 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (534)
..+++.|+..|.+... +.|+..+ |..-+-.+.+..+++.+..--.+..+-.+-.+.....+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3445555554443333 3344422 233333444444444444433333332222233333444444455555555555
Q ss_pred HHHH
Q 009470 275 FREM 278 (534)
Q Consensus 275 ~~~m 278 (534)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 5544
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.72 E-value=82 Score=26.04 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=34.4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009470 171 IDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR 232 (534)
Q Consensus 171 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 232 (534)
.+.+++.|.+++. --..++..+...++.-.|.++++++.+.+...+..|--..+..+...|
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555655443 445566666666666677777777776655554444444444444444
No 432
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.65 E-value=62 Score=20.73 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH
Q 009470 301 GQITRAHDVFAEMLEVGCEPNSITF 325 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~ 325 (534)
|-++++..++++|.+.|+.-+...|
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333344444444444433333333
No 433
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.63 E-value=1e+02 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
-|..|+..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777777665
No 434
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.08 E-value=2.3e+02 Score=27.12 Aligned_cols=115 Identities=10% Similarity=0.192 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------cCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHcCChHH
Q 009470 303 ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK------ASRTEKVLQVYNQMKRLGCEADT-ITYNFLIDCHCKDGKLED 375 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~------~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~ 375 (534)
++++..++++....+ .|..+.....|.++-. .-+|.....+|+-+...+ |++ ++.|--+ +..+..-.+.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHH-HHHHhhhHHh
Confidence 455666666666555 3555555555544321 124555555666555543 322 2222222 2333334455
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 376 AIKVLNSMVRKGCNPNASTFN-MIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 376 A~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
++.+.+-+...+---+-..|. .-...+.+.|+.++|..-|++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 555555554442111112222 2234455566666666666665543
No 435
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=50.82 E-value=3.3e+02 Score=28.80 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=40.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI-AFSIVISIL 228 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~ 228 (534)
....++..+.+++--.+|.+++-++.... ++--|....++.+.-.++..+...=..|+.. ...+....|
T Consensus 180 l~~~iV~f~mkHNAE~eAiDlL~Eve~id----------~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IY 249 (878)
T KOG2005|consen 180 LVQEIVPFHMKHNAEFEAIDLLMEVEGID----------LLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIY 249 (878)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHhhhHh----------HHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Confidence 44555666666666666777666554332 3334555556666666666665543334422 333444444
Q ss_pred HhcCCHHHHH
Q 009470 229 CRKRRASEAQ 238 (534)
Q Consensus 229 ~~~g~~~~A~ 238 (534)
.+.+++.+|.
T Consensus 250 lKf~~~~~al 259 (878)
T KOG2005|consen 250 LKFNEYPRAL 259 (878)
T ss_pred HHHHHhHHHH
Confidence 4444444433
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.48 E-value=2.7e+02 Score=27.79 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=9.4
Q ss_pred CChHHHHHHHHHHHHCCCC
Q 009470 371 GKLEDAIKVLNSMVRKGCN 389 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~ 389 (534)
++.+.|...+..|.+.|..
T Consensus 244 sd~~aal~~l~~~l~~G~d 262 (413)
T PRK13342 244 SDPDAALYYLARMLEAGED 262 (413)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4455555555555554443
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.32 E-value=42 Score=31.38 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYT 289 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 289 (534)
.-|+.-|....+.||+++|+++++|.++.|..--..+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 3456788888888888888888888888776533333
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.21 E-value=2.2e+02 Score=26.32 Aligned_cols=144 Identities=15% Similarity=0.205 Sum_probs=70.0
Q ss_pred HHHHHccCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH---HcCC--CCCHHHHHHH
Q 009470 155 INLAGKVRQFDLAWHFI----DLMKSRNVEITVDTFSILVRRYVRAGLAA-EAVHAFNRME---EYGC--APDKIAFSIV 224 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~----~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~---~~g~--~~~~~~~~~l 224 (534)
...+.+.|+...|-++. +-..+.+.+++......++..+...+.-+ +-.++.+++. +.|- .-++.....+
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~ 96 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLL 96 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 33445555555444433 33334466666666666666666554322 1222222221 2222 2356778888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 304 (534)
...|.+.|++.+|+..|-.-.+ ++...+..++..+...|...++- ...-.. +-.|.-.|+..
T Consensus 97 a~~~~~e~~~~~A~~Hfl~~~~---~~~~~~~~ll~~~~~~~~~~e~d--------------lfi~Ra-VL~yL~l~n~~ 158 (260)
T PF04190_consen 97 AEKLWKEGNYYEAERHFLLGTD---PSAFAYVMLLEEWSTKGYPSEAD--------------LFIARA-VLQYLCLGNLR 158 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHTS-H---HHHHHHHHHHHHHHHHTSS--HH--------------HHHHHH-HHHHHHTTBHH
T ss_pred HHHHHhhccHHHHHHHHHhcCC---hhHHHHHHHHHHHHHhcCCcchh--------------HHHHHH-HHHHHHhcCHH
Confidence 8899999999998877653321 12333333444444444444331 111122 22366678888
Q ss_pred HHHHHHHHHHHc
Q 009470 305 RAHDVFAEMLEV 316 (534)
Q Consensus 305 ~A~~~~~~m~~~ 316 (534)
.|...++...+.
T Consensus 159 ~A~~~~~~f~~~ 170 (260)
T PF04190_consen 159 DANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
No 439
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=48.86 E-value=2.8e+02 Score=27.42 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
+..+...++.. ..|+...|+..++.+.... +++. . -..+...+++.+-...+..+...+.-++.+
T Consensus 191 ~~~a~~~l~~~--s~GD~R~aLN~LE~~~~~~-~~~~-~-----------~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA 255 (436)
T COG2256 191 DEEALDYLVRL--SNGDARRALNLLELAALSA-EPDE-V-----------LILELLEEILQRRSARFDKDGDAHYDLISA 255 (436)
T ss_pred CHHHHHHHHHh--cCchHHHHHHHHHHHHHhc-CCCc-c-----------cCHHHHHHHHhhhhhccCCCcchHHHHHHH
Confidence 34444444433 3577777777666665432 2221 0 002222333333222344455555556666
Q ss_pred HHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 262 WCRA---GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 262 ~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
+.|. .+++.|+-++-+|.+.|..|....-..++-++-.-|
T Consensus 256 ~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 256 LHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 6543 577888888888888776655554444444443333
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.23 E-value=1.3e+02 Score=27.61 Aligned_cols=21 Identities=14% Similarity=0.388 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m 278 (534)
+...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444445555555555555444
No 441
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.05 E-value=3.9e+02 Score=28.84 Aligned_cols=157 Identities=8% Similarity=0.062 Sum_probs=91.1
Q ss_pred ChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 009470 108 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS 187 (534)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 187 (534)
..+.+.++++.- .+++|+..-.......+-..........|+.+.-.|+++.|-...-.|.... ..-|.
T Consensus 359 ~~Dhi~Wll~~k-------~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~----~~eWe 427 (846)
T KOG2066|consen 359 QEDHIDWLLEKK-------KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN----AAEWE 427 (846)
T ss_pred cchhHHHHHHhh-------HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcch----HHHHH
Confidence 345677777643 3667776655544322211245678889999999999999988888876543 46777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------------hhcc---CCC
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDS--------------LKDK---FEP 250 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~--------------~~~~---~~~ 250 (534)
.-+..+...++......+ +....-..+...|..++..+.. .+...-.+...+ ...+ ...
T Consensus 428 ~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se 503 (846)
T KOG2066|consen 428 LWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE 503 (846)
T ss_pred HHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc
Confidence 777777777665443332 2221112355667777766655 222221111111 1100 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
+...-..|+..|...+++..|++++-.++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 22334457788888888888888776665
No 442
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.09 E-value=1.3e+02 Score=24.94 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 274 VFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 274 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
+...+.+.|.+++.. -..++..+.+.++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455566654442 33455666666666677777777776665555555444455554444
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.06 E-value=2.5e+02 Score=26.50 Aligned_cols=70 Identities=10% Similarity=0.335 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------CCCHHHH
Q 009470 412 HRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----------MGHWNNA 481 (534)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~A 481 (534)
.++|+.+.+.++.|.-..+..+.-.+.+.=.+..++.+|+.+.. |..-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45677777777777777776666666666677777777777754 22235556655553 4666666
Q ss_pred HHHHH
Q 009470 482 YKYIR 486 (534)
Q Consensus 482 ~~~~~ 486 (534)
+++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55554
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.39 E-value=36 Score=23.58 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRA 196 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 196 (534)
....++.+++..++..-.++++..+++....|. .+..+|..-++.+++.
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 445777888888888888888888888888774 5777777777776654
No 445
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.36 E-value=1.2e+02 Score=22.49 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=5.7
Q ss_pred CChHHHHHHHHHHH
Q 009470 371 GKLEDAIKVLNSMV 384 (534)
Q Consensus 371 g~~~~A~~~~~~m~ 384 (534)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444433
No 446
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.72 E-value=2.2e+02 Score=25.99 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh------CCCCCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 395 FNMIFRCISKLGDVNGAHRMYGKMKD------LKCEPNTVTY-----------NILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~m~~------~~~~p~~~~~-----------~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
...-.+-+.+.|++.+|..-|.+.+. ..-+|...-| ..+-+++...|++-++++.-.+.....
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 33344567889999999998887531 1123433222 233445556788888888888888763
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 458 VEPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 458 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+-+...|-.-..+....=+.++|..-|...++.
T Consensus 261 -~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 261 -PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred -CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 556777777777777777888999989888873
No 447
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.71 E-value=1.2e+02 Score=32.83 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=58.6
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 238 (534)
.-++++++...+.+...--| .++|..+.+.|.++-|+...+.=.. -...+...|+++.|+
T Consensus 604 Li~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~t------------RF~LaLe~gnle~al 663 (1202)
T KOG0292|consen 604 LLNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERT------------RFELALECGNLEVAL 663 (1202)
T ss_pred HHhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcch------------heeeehhcCCHHHHH
Confidence 34456666655554432222 2356666677777777765433211 112345677777777
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+.-.++. |..+|..|.....+.|+.+-|+..|++.+.
T Consensus 664 e~akkld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 664 EAAKKLD-----DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHhcC-----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 7666554 567777788777778887777777776654
No 448
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.34 E-value=5e+02 Score=29.33 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcC--ChhHHHHHHHHHHHc
Q 009470 325 FNNLMRVHVKAS--RTEKVLQVYNQMKRL 351 (534)
Q Consensus 325 ~~~li~~~~~~g--~~~~a~~~~~~~~~~ 351 (534)
+..++.+|++.+ ++++|+.+..++.+.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344555555555 555666665555543
No 449
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.26 E-value=2.1e+02 Score=24.97 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.1
Q ss_pred HHHcCCHHHHHHHHHHH
Q 009470 297 LCRCGQITRAHDVFAEM 313 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m 313 (534)
....|++++|.+-++++
T Consensus 39 ~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 39 LLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 33445555555444444
No 450
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.12 E-value=5e+02 Score=29.30 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc
Q 009470 287 VYTYSIVIDALCRCG--QITRAHDVFAEMLEV 316 (534)
Q Consensus 287 ~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~ 316 (534)
..-...++.+|.+.+ ++++|+.+..++.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344567888899988 899999999998865
No 451
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.45 E-value=2.8e+02 Score=26.26 Aligned_cols=189 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHH---------HHHcCCCCC--
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSR-NVEITVDTFSILVRRYVRAG-----LAAEAVHAFNR---------MEEYGCAPD-- 217 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~---------m~~~g~~~~-- 217 (534)
+..+++.|..+ ...+++.+... .-..+...|..++..+.... ..+.....|+. +.+.|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HhcCC-----HHHHHHHHHHhhccCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 218 KIAFSIVISIL-CRKRR-----ASEAQSFFDSLKDKFEP-----DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 218 ~~~~~~ll~~~-~~~g~-----~~~A~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
.......++.. ..... .+.|.+.|+....+..+ +......+.....+.|+.++...+++..... .+
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---ST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CC
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCChhHHHHHHHH
Q 009470 287 VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVH-VKASRTEKVLQVYNQ 347 (534)
Q Consensus 287 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~ 347 (534)
......++.+++...+.+...++++.....+..++......+.... ......+.+.+.+..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 452
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.41 E-value=99 Score=21.15 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=8.6
Q ss_pred HHcCChHHHHHHHHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~ 385 (534)
.+.|++=+|-++++++-.
T Consensus 10 ~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHTT-HHHHHHHHHHHCC
T ss_pred HcCCCHHHhHHHHHHHHH
Confidence 344555555555555544
No 453
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=44.24 E-value=1.3e+02 Score=22.38 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 009470 248 FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQ 302 (534)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 302 (534)
.|.|...-..+...+...|++++|++.+-++.+..... +...-..++..+.-.|.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34455666666666666666666666666665542221 23333444444444443
No 454
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.78 E-value=3e+02 Score=26.38 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhh
Q 009470 196 AGLAAEAVHAFNRMEEY---GCAPDKIAFSI--VISILCRKRRASEAQSFFDSLK 245 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~---g~~~~~~~~~~--ll~~~~~~g~~~~A~~~~~~~~ 245 (534)
.++.++|++.++++.+. .-.|+.+.|.. ..+.+...|+..++.+.+++.+
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~ 142 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLK 142 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33445555555444321 11234433322 2333444555555555555543
No 455
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.64 E-value=14 Score=35.01 Aligned_cols=121 Identities=14% Similarity=0.208 Sum_probs=80.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHH
Q 009470 402 ISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVN-TYRILITMYCGMGHWNN 480 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~ 480 (534)
....|.++.|++.|...++.. .+....|.--..++.+.++...|++=+....+. .||.. -|-.=-.+-.-.|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 346788999999998888765 345666666677788888888888877777663 45542 23222334455789999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 481 AYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 481 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
|.+.|+...+.+ + +..+-..+=...-..+..++-...+++.++.+
T Consensus 201 aa~dl~~a~kld-~--dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 201 AAHDLALACKLD-Y--DEANSATLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHHHHhcc-c--cHHHHHHHHHhccchhhhhhchhHHHHHHHHh
Confidence 999999998855 3 44333344444555666666666666665543
No 456
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.45 E-value=4.8e+02 Score=28.62 Aligned_cols=173 Identities=12% Similarity=0.125 Sum_probs=85.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEIT--VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR 230 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 230 (534)
.+-..|...|+|+.|+++-..- |+ ..++..-.+.|.+.+.+..|-+++.++.+ .|..+.--+..
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~ 428 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLE 428 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHh
Confidence 3445677889999887766432 21 12344455567788888899888887733 23333334445
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH-----H-hcCCHH----HHHHHHHH--------HHHC-CCCCCHHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW-----C-RAGNIS----EAERVFRE--------MKMA-GIQPNVYTYS 291 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~-----~-~~g~~~----~A~~~~~~--------m~~~-g~~p~~~~~~ 291 (534)
..+.+.-..++.+=.++++|...+-..++..| . +.++++ ++..-++. +... ...-+...+.
T Consensus 429 ~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nre 508 (911)
T KOG2034|consen 429 INQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRE 508 (911)
T ss_pred cCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 55555333344433334444433333322222 1 112222 22221111 1000 0011111222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
+.-..+...|+.++...+-.-|. -|..++..+++.+.+++|++++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334445566666555444443 2556677777788888877776543
No 457
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.41 E-value=2.5e+02 Score=25.30 Aligned_cols=54 Identities=9% Similarity=0.125 Sum_probs=23.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
++.++...|+.+.|.++++.+.-.. .+......++.. ..++.+.+|..+.+...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 4455555555555555555443211 112222222222 34455555555554443
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.91 E-value=3.5e+02 Score=26.90 Aligned_cols=134 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHH-------HHHcCCCC--
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEV-GCEPNSITFNNLMRVHVKASRTEKVLQVYNQ-------MKRLGCEA-- 355 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------~~~~g~~~-- 355 (534)
|...|.-=--+-.+..--.+..+-.+.+.+. .-.-+......++..+....++.+.++..+. ..+.|..|
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~ 117 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLY 117 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHH
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHH-------HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 356 ---DTITYNFLIDCHCKDGKLEDAIKVLN-------SMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 356 ---~~~~~~~li~~~~~~g~~~~A~~~~~-------~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
.-...-.|++.+|-.||+..|+++++ .+..+-..-...++-.+.-+|.-.+++.+|.+.|....
T Consensus 118 ~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 118 KMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=42.77 E-value=1.7e+02 Score=23.14 Aligned_cols=99 Identities=7% Similarity=0.086 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 409 NGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
+.+..+++.+.+.|..-|......++......+.+ ....+-.++.++|+.++ .....+. .....+.|.++.++-
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-G~~~I~~~L~~kGi~~~--~i~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-GPRRIRQKLKQKGIDRE--IIEEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--HH--HHHHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc-cHHHHHHHHHHHCCChH--HHHHHHH---HhhHHHHHHHHHHHH
Confidence 44556677777777665555555566655542222 24555667777776432 2222222 223344455655555
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHcCC
Q 009470 489 IEEKCLKPGSSVYEMVLQQLRRAGQ 513 (534)
Q Consensus 489 ~~~~~~~p~~~~~~~l~~~~~~~g~ 513 (534)
.....-.++......++..+.+.|-
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~rrGF 107 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMRRGF 107 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHHTT-
T ss_pred HhcccCCCCHHHHHHHHHHHHHCCC
Confidence 4443224555666666666666653
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.60 E-value=3.5e+02 Score=26.72 Aligned_cols=54 Identities=7% Similarity=-0.002 Sum_probs=31.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHhhc
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKI--AFSIVISILC--RKRRASEAQSFFDSLKD 246 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~--~~g~~~~A~~~~~~~~~ 246 (534)
.+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344677777777777777765 444443 2333333332 45566777777776543
No 461
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.59 E-value=19 Score=34.13 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=47.0
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV-YTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
.|.+++|++.|.......++....|..-..++.+.+++..|++-++...+. .||. .-|-.--.+-...|+|++|...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHHH
Confidence 444555555555555555555555555555666666666666655555543 2221 2232222333345666666666
Q ss_pred HHHHHHcCCCCC
Q 009470 310 FAEMLEVGCEPN 321 (534)
Q Consensus 310 ~~~m~~~~~~~~ 321 (534)
+....+.+..+.
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 666666554443
No 462
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=41.74 E-value=1.2e+02 Score=21.54 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
+.+.|..++..++..-+.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 456677777777776667778888877766554
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.67 E-value=3.5e+02 Score=26.58 Aligned_cols=54 Identities=13% Similarity=-0.050 Sum_probs=33.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHH--HcCCHHHHHHHHHH
Q 009470 259 VRGWCRAGNISEAERVFREMKMAGIQPNVYTY----SIVIDALC--RCGQITRAHDVFAE 312 (534)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~--~~g~~~~A~~~~~~ 312 (534)
+..+.+.+++..|.++|+++......++...+ ..+..+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34566778888888888888777554444333 23333333 24567788887775
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.42 E-value=2.3e+02 Score=30.93 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=36.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
...|+.+.|++.-..+- +..+|..|.......|+.+-|+..|++.+. |+.|--.|.-.|+.++..
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 34556665555444331 445566666666666666666666665543 222222344455555555
Q ss_pred HHHHHH
Q 009470 448 KLKKEM 453 (534)
Q Consensus 448 ~l~~~m 453 (534)
++.+-.
T Consensus 719 Km~~ia 724 (1202)
T KOG0292|consen 719 KMMKIA 724 (1202)
T ss_pred HHHHHH
Confidence 444443
No 465
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.00 E-value=5.7e+02 Score=28.77 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNG-AHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRIL 468 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~l 468 (534)
++..+-...+.++...+..+. +...+..+.. .+|...-...+.++...|..+.+...+..+.+ .++..+-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHH
Confidence 344455555555555544332 2333333333 23555555555666666654443333333332 2344444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
+.++...+. +++...+..+.+ .|+..+-...+.++.+.+....+...+..++
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 555555544 344455555543 3455555555555555422233444444433
No 466
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.80 E-value=2.8e+02 Score=25.17 Aligned_cols=59 Identities=7% Similarity=0.021 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR-CGQITRAHDVFAEMLE 315 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~ 315 (534)
.+++.+-+.|+++++.+.++++...+...+..-.+.+..+|-. -|....+.+++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566777788888888888888887776776666666666532 3445555666555543
No 467
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.37 E-value=2.9e+02 Score=25.16 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=73.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHHHcCChH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNS-ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTIT-YNFLIDCHCKDGKLE 374 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~ 374 (534)
|....+++.|+..|.+.+.. .|++ .-|+.=+-++.+..+++.+.+=-....+. .||... ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55566788888877666655 5665 44455666777888888877666555554 455433 334556667778888
Q ss_pred HHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009470 375 DAIKVLNSMVRK----GCNPNASTFNMIFRCISKLGDVNGAHRMYGKM 418 (534)
Q Consensus 375 ~A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 418 (534)
+|...+.+.... .+.+.......|..+--+.-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888877432 33444555566655544444445555555544
No 468
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.87 E-value=3.8e+02 Score=27.21 Aligned_cols=215 Identities=16% Similarity=0.197 Sum_probs=94.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHH-----HHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHH
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDT--FSILVRR-----YVRAGLAAEAVHAFNRMEEYGCAPDKIA--FSI 223 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ 223 (534)
..+....+.|+.+....++ +.|..++... ....+.. .+..|+.+ +.+.+.+.|..++... -.+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll----~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHHHHHHH----HcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc
Confidence 3445556677766555444 4455544321 2233333 44444443 3444455555433211 122
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 009470 224 VISILC--RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG--NISEAERVFREMKMAGIQPNVYTY--SIVIDAL 297 (534)
Q Consensus 224 ll~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~ 297 (534)
.+...+ ..|+.+-+..+++.-..-...+.. -.+.+...+..| +. ++++.+.+.|..++.... .+.+...
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~----~iv~~Ll~~g~din~~d~~g~tpL~~A 183 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSD-GENLLHLYLESNKIDL----KILKLLIDKGVDINAKNRYGYTPLHIA 183 (480)
T ss_pred hhhHHHhcccChHHHHHHHHHcCCCCCccCCC-CCcHHHHHHHcCCChH----HHHHHHHHCCCCcccccCCCCCHHHHH
Confidence 333344 666666555554432111111111 223455556666 44 344555566665543321 2344555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHH
Q 009470 298 CRCGQITRAHDVFAEMLEVGCEPNSIT--------FNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT---ITYNFLIDC 366 (534)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~--------~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~ 366 (534)
+..|+.+ +++.+.+.|..++... +...+...+..|+ ...++.+.+.+.|..++. ...+.| ..
T Consensus 184 ~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL-~~ 256 (480)
T PHA03100 184 VEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPL-HY 256 (480)
T ss_pred HHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHH-HH
Confidence 6666544 3444455565554221 1333444445555 112334444555544332 223333 33
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPN 391 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~ 391 (534)
.+..|+.+ +++.+.+.|..++
T Consensus 257 A~~~~~~~----iv~~Ll~~gad~n 277 (480)
T PHA03100 257 AVYNNNPE----FVKYLLDLGANPN 277 (480)
T ss_pred HHHcCCHH----HHHHHHHcCCCCC
Confidence 34555543 4444455554433
No 469
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=39.14 E-value=3.5e+02 Score=25.74 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=46.9
Q ss_pred HHHHHHHhhhcccCCCCh--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 009470 111 TVRHVIEKSCGVRHGIPL--LQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT 182 (534)
Q Consensus 111 ~~~~~l~~~~~~~~~~~~--~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 182 (534)
++..+..+|...+.. ++ .....-.+|+....+...+.+.+..++... .|+..+|.-.++.+...|-..+
T Consensus 172 ii~pi~SRC~KfrFk-~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S--~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFK-KLKDEDIVDRLEKIASKEGVDIDDDALKLIAKIS--DGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred CChHHHhhHHHhcCC-CcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHhhccCcccc
Confidence 455666777655432 22 234455677777778888888888887654 4888899888888776654444
No 470
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=38.51 E-value=1.3e+02 Score=30.27 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=47.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcC-CH
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIA----FSIVISILCRKR-RA 234 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~g-~~ 234 (534)
...++++|+.+.++.++.+.+.++ |-...|.++|+++.+.|+.||..+ ....+..|+=.| .+
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ 272 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTV 272 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCH
Confidence 346778888888888777654332 445678889999999999888655 223344566665 56
Q ss_pred HHHHHHHH
Q 009470 235 SEAQSFFD 242 (534)
Q Consensus 235 ~~A~~~~~ 242 (534)
+++.++..
T Consensus 273 ee~~~lr~ 280 (545)
T TIGR01228 273 EDADKLRQ 280 (545)
T ss_pred HHHHHHHH
Confidence 66665544
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.40 E-value=3.6e+02 Score=25.75 Aligned_cols=96 Identities=13% Similarity=0.193 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCH----H
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKM----AGIQPNVYTYSIVIDAL-CRCGQITRAHDVFAEMLEVGCEPNS----I 323 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~-~~~g~~~~A~~~~~~m~~~~~~~~~----~ 323 (534)
..+-.....||+-||.+.|++.+++..+ .|.+.|+..+.+-+..+ ....-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4566677889999999999988877644 47777877666554433 3333455666666677777755443 2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
+|..+- +...+++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 333322 3446678888888876654
No 472
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.24 E-value=73 Score=31.81 Aligned_cols=56 Identities=18% Similarity=0.038 Sum_probs=29.9
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
+.-+.+.+.|+.|..++.++.+.+ +.++..|..-..++.+.+++..|+.=+.+..+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 344445566666666666665553 22333444444555666666666655555544
No 473
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=38.09 E-value=4.9e+02 Score=27.15 Aligned_cols=135 Identities=10% Similarity=0.143 Sum_probs=71.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 009470 370 DGKLEDAIKVLNSMVRKGCNPNASTFNMIFR--CISKLGDVNGAHRMYGKMKDLKCEPNTV-TYNILMQMFATSKSTDMV 446 (534)
Q Consensus 370 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a 446 (534)
.|++++|+..++.....+. .+..+..... -++.......-...|+++...+ |.-. +..-++.++ +....+
T Consensus 322 ~~~l~eal~~~e~~c~~~~--~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~--P~~~~~le~l~~~~---~~~~~~ 394 (547)
T PF14929_consen 322 GGRLKEALNELEKFCISST--CALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKD--PTMSYSLERLILLH---QKDYSA 394 (547)
T ss_pred cccHHHHHHHHHHhccCCC--ccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCC--CcHHHHHHHHHhhh---hhHHHH
Confidence 3777888777776554431 2222222222 2233335556666777776543 3221 222222222 224556
Q ss_pred HHHHHHH-HHCCCCCCHHHHHHHHHHHHh-CC-------CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 447 LKLKKEM-EENEVEPNVNTYRILITMYCG-MG-------HWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 447 ~~l~~~m-~~~~~~p~~~~~~~li~~~~~-~g-------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
.++++.+ ....+.|...+|.-+...+.+ .+ +...+++++-.+.+-++..-+...|..+...+-+.
T Consensus 395 ~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 395 EQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Confidence 6666644 223445777788777777776 22 34456666666666666666666676665554433
No 474
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.86 E-value=1e+02 Score=21.40 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRV 331 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 331 (534)
+...++.++..+++..-+++++..+.++.+.|. .+..+|.--++.
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~ 51 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRS 51 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 334444455555555555555555555555442 233344333333
No 475
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.40 E-value=2.3e+02 Score=23.18 Aligned_cols=66 Identities=9% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 425 PNTVTYNILMQMFATSKS---TDMVLKLKKEMEENEVEPN--VNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 425 p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
++..+--.+..++.+..+ ..+.+.+++++.+.. .|+ ......|.-++.+.|+|++++++++..++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444444555554443 334455566655422 221 122223334566666677777766666663
No 476
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.34 E-value=2.2e+02 Score=22.85 Aligned_cols=81 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVE 522 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 522 (534)
.....++.+.+....---|-.-|-.+=-.|++.-+ ++.++|+.|..++--.--...|......+...|++++|.++++
T Consensus 46 ~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 46 LELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHH
Q 009470 523 KMV 525 (534)
Q Consensus 523 ~~~ 525 (534)
.-+
T Consensus 124 ~Gi 126 (126)
T PF08311_consen 124 LGI 126 (126)
T ss_dssp HHH
T ss_pred hhC
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.26 E-value=2.8e+02 Score=24.07 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=12.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009470 259 VRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445555555555555555544
No 478
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.82 E-value=4.9e+02 Score=26.87 Aligned_cols=123 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 009470 398 IFRCISKLGDVNGAHRMYGKM-KDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMG 476 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 476 (534)
++.-|.+.+++++|..++..| -+..-.-=....+.+++.+.+..--++....++.+...-..|....-...+..|.. -
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 477 HWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
=.+-|.+.|..++..+ -|+.....-...|+.|--+++...+...|
T Consensus 493 V~~~aRRfFhhLLR~~-------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQ-------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHHHHHHHHHHhh-------HHHHHHHHHHhccchHHHHHHHHHHHhcc
No 479
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.80 E-value=74 Score=31.75 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=50.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH
Q 009470 190 VRRYVRAGLAAEAVHAFNRMEEYGCAPDK-IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268 (534)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (534)
+..+.+.+.++.|+.++.+..+. .|+- ..|..-..++.+.+++..|+.=+.+..+.-+.....|..-..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 33444556666666666666653 3432 23333335566666666666555554443333333343334444444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVI 294 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll 294 (534)
.+|+..|+.... +.|+..-....+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHH
Confidence 555555555443 345544444433
No 480
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.67 E-value=2e+02 Score=22.23 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m 278 (534)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666665555554
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.76 E-value=2.2e+02 Score=26.82 Aligned_cols=33 Identities=6% Similarity=0.147 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 248 FEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+.|.-..+.-+.-.+.+.=.+...+.+++.+..
T Consensus 274 i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 274 IHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred CCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 444444444444444555555555555555543
No 482
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.57 E-value=44 Score=26.98 Aligned_cols=21 Identities=48% Similarity=0.664 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 009470 301 GQITRAHDVFAEMLEVGCEPN 321 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~ 321 (534)
|.-.+|..+|..|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333444455555555544444
No 483
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.54 E-value=5.1e+02 Score=27.94 Aligned_cols=81 Identities=12% Similarity=-0.027 Sum_probs=51.8
Q ss_pred hHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHHh
Q 009470 409 NGAHRMYGKM-KDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE---VE----------PNVNTYRILITMYCG 474 (534)
Q Consensus 409 ~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~---~~----------p~~~~~~~li~~~~~ 474 (534)
++..+.+..+ ...|+..+......+++.. .|++..++.+++++...| +. .+......++.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 4445555544 4457777777777777644 599999999998876543 11 12222334444443
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 009470 475 MGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~ 492 (534)
.|+...++++++++.+.|
T Consensus 258 ~~d~~~al~~l~~L~~~G 275 (709)
T PRK08691 258 NQDGAALLAKAQEMAACA 275 (709)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 478888888888888766
No 484
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=35.07 E-value=3.4e+02 Score=27.55 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=19.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCC
Q 009470 509 RRAGQLQKHEELVEKMVDRGFTARPL 534 (534)
Q Consensus 509 ~~~g~~~~a~~~~~~~~~~g~~~~~l 534 (534)
...|...++-..|++|++.|-..-|+
T Consensus 404 lg~~eR~~~~l~fNe~V~~Gel~aPI 429 (545)
T TIGR01228 404 LGYGERAKLGLAINEMVRSGELKAPV 429 (545)
T ss_pred cCccHHHHHHHHHHHHHHcCCccCCE
Confidence 44566777888899999999765553
No 485
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.00 E-value=3.5e+02 Score=26.05 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 165 DLAWHFIDLMKSR--NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 165 ~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
++.+.+++.+... +..--+..|-.+++.....|.+++++.+|++....|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555544443 1111246788888999999999999999999999998887777777777655
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.95 E-value=2.4e+02 Score=29.68 Aligned_cols=92 Identities=13% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMA--GIQPNVYTYSIVIDALCRCGQIT------RAHDVFAEMLEVGCEPNSITFNNL 328 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 328 (534)
+|..+|...|++..+.++++..... |-+.=...||..|+.+.+.|.++ .|.++++...-.| |..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
+.+-..--+-.-..-++.++...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~ 132 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR 132 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh
No 487
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.77 E-value=6.2e+02 Score=27.36 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=58.9
Q ss_pred HHHHhhhcccC-CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CC----------
Q 009470 114 HVIEKSCGVRH-GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNV-EI---------- 181 (534)
Q Consensus 114 ~~l~~~~~~~~-~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~---------- 181 (534)
.++.+|....- .....+......++....+...+......++... .|++..|+.+++.+...+. ..
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG 242 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHc
Confidence 44566643321 1123344455555566667777787777777655 4888888888877654321 11
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 009470 182 --TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP 216 (534)
Q Consensus 182 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 216 (534)
+......++.++. .|+...++.++++|...|+.+
T Consensus 243 ~~d~~~If~LldAL~-~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 243 AVDKQYLYELLTGII-NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred ccCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 2222333444443 477888888888888777543
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.53 E-value=2.2e+02 Score=24.21 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=29.9
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 175 KSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 175 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
++.|...+. .-..++..+...+..-.|.++++++.+.+...+..|....+..+.+.|-
T Consensus 18 ~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334444332 3334445554555555666666666666555555554444455555543
No 489
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.52 E-value=4.5e+02 Score=25.71 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 009470 152 HEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC-- 229 (534)
Q Consensus 152 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-- 229 (534)
......+...++.+....++.. .+-.+.++..+...+.+.|+.+.|.+++++.. .++...+....
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRAL--------f~~e~~~~~~F~~ 80 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL--------FAFERAFHPSFSP 80 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHHHHHhhh
Q ss_pred -----hcCCHHHHHHHHHHhhccCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-Hc
Q 009470 230 -----RKRRASEAQSFFDSLKDKFEPDVIVYTNL---VRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC-RC 300 (534)
Q Consensus 230 -----~~g~~~~A~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~ 300 (534)
..|...--...++ |...|-++ +..+.+.|-+..|+++.+-+...+..-|....-.+|+.|+ +.
T Consensus 81 ~~~~~~~g~~rL~~~~~e--------NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs 152 (360)
T PF04910_consen 81 FRSNLTSGNCRLDYRRPE--------NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS 152 (360)
T ss_pred hhcccccCccccCCcccc--------chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc
Q ss_pred CCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcCC--------------hhHHHHHHHHHHH
Q 009470 301 GQITRAHDVFAEMLEVGCEPN------SITFNNLMRVHVKASR--------------TEKVLQVYNQMKR 350 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~--------------~~~a~~~~~~~~~ 350 (534)
++++-.+++.+..... ...+ ...|+..+..+...+. .+.|.+.+.+...
T Consensus 153 ~~y~~Li~~~~~~~~~-~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 153 RQYQWLIDFSESPLAK-CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred CCHHHHHHHHHhHhhh-hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
No 490
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.04 E-value=4.1e+02 Score=25.03 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 256 TNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
-.++....+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555666666666666666665 334445566777788999999988887764
No 491
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.89 E-value=2e+02 Score=21.33 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 169 HFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRM 209 (534)
Q Consensus 169 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 209 (534)
++|+.....|+..|...|..+++...-+=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555555555555555555544444444444444444
No 492
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=33.84 E-value=4.4e+02 Score=25.42 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 303 ITRAHDVFAEMLEVGCEPNS----ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
.+++..++++++.. .|+. .-|..+++.....|.++.++.+|++.+..|-.|=...-..+++.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34555566666554 3332 33445555555566666666666666666555444444444433
No 493
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=33.40 E-value=3.1e+02 Score=23.52 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
..+..++..+|+ +..+....+..++.....+.|.+++..
T Consensus 88 ~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~k 126 (174)
T COG2137 88 ARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRK 126 (174)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 334444455542 333333333333333344444444433
No 494
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.36 E-value=3.3e+02 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=8.6
Q ss_pred HcCCHHHHHHHHHHHH
Q 009470 299 RCGQITRAHDVFAEML 314 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~ 314 (534)
+.|++++|.+.++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3455555555555554
No 495
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.24 E-value=2e+02 Score=21.36 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQ 513 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 513 (534)
+-|...-..+...+...|++++|++.+-++++...-.-+...-..++..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3345555566666677777777777666666644212233444555555555554
No 496
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.97 E-value=5.3e+02 Score=26.09 Aligned_cols=118 Identities=10% Similarity=0.024 Sum_probs=76.2
Q ss_pred cCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 161 VRQFDLAW-HFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQS 239 (534)
Q Consensus 161 ~~~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 239 (534)
.|+.-.|- ++++.++...-.| .........+...|+++.+.+.+....+. +.....+...+++...+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p--~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDP--VLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCc--hhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34444443 3444444332223 33344445567789999999888776543 34566788889999999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 240 FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
.-+.|....-.+..+...-....-..|-++++.-.|+++...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 888877653335555444444455567788888888877643
No 497
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=32.95 E-value=6.8e+02 Score=27.32 Aligned_cols=361 Identities=9% Similarity=0.051 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYV---RAGLAAEAVHAFNRMEEYGCAPDKIAFSI 223 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 223 (534)
+-..+..+|.++.+.|+++....--..|.+.- +.+...|..-+.... ..+...++..+|++....- -++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 34567888899999999988777777776653 556677766665443 3366677777777765432 23334444
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHhhcc----CCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009470 224 VISILC-------RKRRASEAQSFFDSLKDK----FEPDVIVYTNLV---RGWCRAGNISEAERVFREMKMAGIQPNVYT 289 (534)
Q Consensus 224 ll~~~~-------~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 289 (534)
.+.-+. +.++++....+|++.... ..--...|.... ..|..+-..+....++..-...+ .|..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhh
Confidence 333332 345677777777775432 222223333322 33444444455666666555543 23222
Q ss_pred HHHHHHHHHH-------cCCHHHHHHH-------HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CC
Q 009470 290 YSIVIDALCR-------CGQITRAHDV-------FAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG-CE 354 (534)
Q Consensus 290 ~~~ll~~~~~-------~g~~~~A~~~-------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~ 354 (534)
-+.-+.--.+ ..+.+.+.+- +++..+.- .+-...|..+|+.+.+.|+.-....+++++.... ..
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~ 345 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLD 345 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcccc
Confidence 2211111111 1222222222 22222221 2334556677777778887766666665554321 00
Q ss_pred C-------------------ChhhHHHHH--------------HHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 355 A-------------------DTITYNFLI--------------DCHCKDGK-LEDAIKVLNSMVRKGCNPNASTFNMIFR 400 (534)
Q Consensus 355 ~-------------------~~~~~~~li--------------~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 400 (534)
+ ....|..-+ -++.+.+. .......+......++ ..++....
T Consensus 346 ~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~----~l~~~~~~ 421 (881)
T KOG0128|consen 346 RALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV----ELHNDYLA 421 (881)
T ss_pred HHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH----HHHHHHHH
Confidence 0 011111111 11111111 1111111111111111 11111111
Q ss_pred HHHhcC-------------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 009470 401 CISKLG-------------DVNGAHRMYGKMKDLKCEPNTVTYNILMQM-FATSKSTDMVLKLKKEMEENEVEPNVN-TY 465 (534)
Q Consensus 401 ~~~~~g-------------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~~~~p~~~-~~ 465 (534)
.....+ .++.|...|.+.......+...+.....+. +...++.+.+..+|+.....|- -+.. .|
T Consensus 422 ~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~-~~iag~W 500 (881)
T KOG0128|consen 422 YRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG-GSIAGKW 500 (881)
T ss_pred HHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc-chHHHHH
Confidence 111111 233444444444332112222222222222 2346889999999999887652 2333 56
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 009470 466 RILITMYCGMGHWNNAYKYIREMIEEKCLKPGS--SVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~ 519 (534)
...++.=...|+...+..+++.+.-.- ..|+. .++..+.+.-...|.++....
T Consensus 501 le~~~lE~~~g~~~~~R~~~R~ay~~~-~~~~~~~ev~~~~~r~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 501 LEAINLEREYGDGPSARKVLRKAYSQV-VDPEDALEVLEFFRRFEREYGTLESFDL 555 (881)
T ss_pred HHHHhHHHHhCCchhHHHHHHHHHhcC-cCchhHHHHHHHHHHHHhccccHHHHhh
Confidence 666666667789999998888877654 34431 223333333344566655443
No 498
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.68 E-value=7.7e+02 Score=27.82 Aligned_cols=184 Identities=10% Similarity=0.036 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH--------HHHHHHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GCNPNA--------STFNMIFRCIS 403 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~--------~~~~~l~~~~~ 403 (534)
|..---.++|+...+. .|..+......+.+..|.++-+.+..+.+.+. ....+. ..|-.-+.++.
T Consensus 670 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333344455554432 34444444455557778877777666655532 111011 11222234444
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHH
Q 009470 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV--NTYRILITMYCGMGHWNNA 481 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A 481 (534)
...+++++.+.+..... ..-...+..++.-....++.+....+.+.+......... ......|.+|.-..++++|
T Consensus 747 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (932)
T PRK13184 747 NKEDYEKAFKHLDNTDP---TLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKA 823 (932)
T ss_pred ccccHHHHHhhhhhCCH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHH
Confidence 44455555543332211 001223334444444455666566666655554322221 2234456677778888888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 482 YKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 482 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
.+++...-...........+.....-+.-.++.+-|..-|....
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 824 YKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 88886654433122222222222222244455555555554444
No 499
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.60 E-value=2.6e+02 Score=22.38 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred Hhhhccc-CCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009470 117 EKSCGVR-HGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR 195 (534)
Q Consensus 117 ~~~~~~~-~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 195 (534)
....... ..+|++--+++..|+.+.-+..........++.-+ ...+.....--+..-|-.+--.|++
T Consensus 10 ~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~------------~~~f~~~~~Y~nD~RylkiWi~ya~ 77 (126)
T PF08311_consen 10 EQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERC------------IRKFKDDERYKNDERYLKIWIKYAD 77 (126)
T ss_dssp HHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHH------------HHHHTTSGGGTT-HHHHHHHHHHHT
T ss_pred HHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHH------------HHHHhhhHhhcCCHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 196 AGLAAEAVHAFNRMEEYGC-APDKIAFSIVISILCRKRRASEAQSFFDS 243 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 243 (534)
.-+ ++.++|..|...|+ .--...|......+...|++++|.++|+.
T Consensus 78 ~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 78 LSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred Hcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 500
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=32.56 E-value=5.8e+02 Score=27.78 Aligned_cols=254 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcC----CCCCHHHHHH
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL-------AAEAVHAFNRMEEYG----CAPDKIAFSI 223 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g----~~~~~~~~~~ 223 (534)
+..+.+.|..-....+-+.....+-.....-+..++......+. |...+.-+..+...+ .-+.......
T Consensus 358 ~~~L~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~l~~~~~~~~~~~~~~~W~~l~~~ll~l~~~~~~f~~l~~~~~~~~ 437 (715)
T PF08314_consen 358 AEILSPYGVPTPLRFLAELQLSQDEEEQLAELRSLLTRLAGRSQPSRDESDWKQLLNDLLWLQDWGGVFGCLSKDEIEEI 437 (715)
T ss_dssp HHHHHT----------------S-HHHHHHHHHHH-HHHHHTT-SSHHHHHHHHHHTTT-TTS--S-SSTTS-HHHHHHH
T ss_pred HHHHhcccccccccccccccccCCHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcCCCCCHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC---CCCHHH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA-----------GNISEAERVFREMKMAGI---QPNVYT 289 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~---~p~~~~ 289 (534)
++.++...|+++-|.+++..-....-+.......++.+.... |.++.|.++++-+.. . .+...-
T Consensus 438 ~l~~LL~~~~f~la~~~~~~~~~~~l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~--~~~~~~~~~~ 515 (715)
T PF08314_consen 438 FLEALLSSGRFSLAKSLYEESSSSPLSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPP--TFPNSPRIQR 515 (715)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT---TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHH--HHHHTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccC--cCCccHHHHH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHc---------CCCCC
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS----RTEKVLQVYNQMKRL---------GCEAD 356 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~---------g~~~~ 356 (534)
...++.+.....++.-.++-=.-+.-..+.....-...+-.++.... +.++..++...+... .....
T Consensus 516 ~~~Li~a~~~Ls~f~l~l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~~~~~~~~~~~~~~~~~ 595 (715)
T PF08314_consen 516 EKDLIKATHALSEFSLVLQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLVLAGSDESSESDDEAAE 595 (715)
T ss_dssp HHHHHHHHHHHTTS-----------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHHHH-----TT---SSTH
T ss_pred HHHHHHHHHHHHhCCeecCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHHHHhcccccccchHHHH
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhH
Q 009470 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS--TFNMIFRCISKLGDVNG 410 (534)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 410 (534)
..+....|.+....+|++-|.+...++.......... .+...-.++.+.|++..
T Consensus 596 ~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~~~ 651 (715)
T PF08314_consen 596 RRILSMCIEAALVEDDFETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKYRS 651 (715)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCCCC
Done!