Query 009470
Match_columns 534
No_of_seqs 799 out of 3097
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-34 4.2E-39 303.6 42.9 390 127-528 132-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.1E-34 7.2E-39 301.8 39.9 393 124-528 96-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.3E-28 2.1E-32 238.6 46.2 376 125-512 12-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-27 4.4E-32 236.4 48.3 364 154-527 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.3E-30 4.4E-35 263.2 25.5 186 254-439 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2E-30 6.9E-35 261.7 24.8 206 200-405 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 8.1E-24 2.8E-28 216.9 40.4 405 112-528 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.4E-23 8.2E-28 209.8 41.6 362 146-517 24-444 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 4E-23 1.4E-27 208.2 40.7 343 170-523 14-405 (450)
10 2gw1_A Mitochondrial precursor 99.9 9.7E-23 3.3E-27 208.8 40.2 365 123-499 50-483 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.3E-21 4.3E-26 201.8 41.1 401 112-528 25-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 6.4E-20 2.2E-24 178.3 42.0 328 149-509 4-351 (359)
13 3fp2_A TPR repeat-containing p 99.9 1.6E-20 5.6E-25 193.4 39.7 372 108-492 55-492 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 1.8E-19 6E-24 175.2 41.5 325 114-471 5-349 (359)
15 3hym_B Cell division cycle pro 99.9 1.8E-19 6.1E-24 173.1 32.1 291 217-514 21-321 (330)
16 2xm6_A Protein corresponding t 99.9 9.1E-17 3.1E-21 163.5 52.3 352 147-528 38-433 (490)
17 3hym_B Cell division cycle pro 99.9 3.4E-19 1.2E-23 171.2 32.3 288 184-477 23-320 (330)
18 1fch_A Peroxisomal targeting s 99.8 4E-19 1.4E-23 173.7 27.8 290 231-525 38-357 (368)
19 2xm6_A Protein corresponding t 99.8 3.8E-16 1.3E-20 158.9 49.4 338 125-492 56-433 (490)
20 4eqf_A PEX5-related protein; a 99.8 2.3E-19 8E-24 175.4 23.2 268 251-523 64-352 (365)
21 1fch_A Peroxisomal targeting s 99.8 4.8E-19 1.6E-23 173.2 25.0 288 196-489 38-357 (368)
22 2ooe_A Cleavage stimulation fa 99.8 4.3E-16 1.5E-20 160.2 44.2 406 108-527 12-492 (530)
23 4eqf_A PEX5-related protein; a 99.8 9.2E-18 3.1E-22 164.0 25.8 264 186-452 68-352 (365)
24 3cv0_A Peroxisome targeting si 99.8 2.3E-17 8E-22 158.0 27.2 275 150-451 23-310 (327)
25 3cv0_A Peroxisome targeting si 99.8 4.9E-17 1.7E-21 155.8 28.5 280 184-490 22-314 (327)
26 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4.2E-21 150.4 29.6 250 228-491 9-264 (291)
27 4g1t_A Interferon-induced prot 99.8 9.3E-16 3.2E-20 155.2 38.3 366 147-529 50-461 (472)
28 3mkr_A Coatomer subunit epsilo 99.8 2.9E-16 1E-20 147.8 27.4 83 371-455 180-263 (291)
29 1b89_A Protein (clathrin heavy 99.8 2.6E-17 9E-22 158.7 19.8 278 127-448 18-303 (449)
30 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-18 4.5E-23 180.6 11.3 115 252-366 127-245 (1134)
31 1b89_A Protein (clathrin heavy 99.8 6.1E-18 2.1E-22 163.1 15.2 284 159-484 14-304 (449)
32 2ooe_A Cleavage stimulation fa 99.8 1.6E-14 5.4E-19 148.5 40.2 374 145-528 10-455 (530)
33 1xi4_A Clathrin heavy chain; a 99.7 6.8E-14 2.3E-18 150.1 44.6 290 189-519 1055-1376(1630)
34 1xi4_A Clathrin heavy chain; a 99.7 8.2E-14 2.8E-18 149.5 44.6 338 132-526 968-1308(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3.7E-18 1.3E-22 177.3 11.0 151 286-441 126-286 (1134)
36 4g1t_A Interferon-induced prot 99.7 6.7E-15 2.3E-19 148.9 32.0 361 125-501 64-469 (472)
37 3uq3_A Heat shock protein STI1 99.7 7.3E-15 2.5E-19 135.4 25.6 223 184-420 6-235 (258)
38 3uq3_A Heat shock protein STI1 99.7 1.1E-14 3.9E-19 134.0 26.6 226 252-491 5-236 (258)
39 2pl2_A Hypothetical conserved 99.7 1.5E-14 5.1E-19 129.9 22.6 80 185-265 7-86 (217)
40 2pl2_A Hypothetical conserved 99.7 1.5E-14 5.1E-19 130.0 22.5 200 145-349 2-212 (217)
41 1ouv_A Conserved hypothetical 99.6 8.2E-13 2.8E-17 123.1 33.2 224 251-492 5-252 (273)
42 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-14 8.7E-19 143.4 24.3 368 125-527 16-421 (452)
43 1ouv_A Conserved hypothetical 99.6 8.3E-13 2.8E-17 123.0 32.6 225 286-529 5-253 (273)
44 3u4t_A TPR repeat-containing p 99.6 1.1E-13 3.7E-18 128.8 26.3 237 148-387 3-251 (272)
45 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-13 8.7E-18 124.7 28.4 200 148-351 37-238 (252)
46 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-13 6.3E-18 125.7 27.2 201 183-386 37-238 (252)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.8E-14 9.7E-19 132.9 21.2 246 265-521 18-269 (275)
48 2h6f_A Protein farnesyltransfe 99.6 2.6E-13 9E-18 132.1 28.7 198 182-383 96-302 (382)
49 3u4t_A TPR repeat-containing p 99.6 1.1E-13 3.6E-18 128.8 24.9 233 255-491 6-250 (272)
50 2q7f_A YRRB protein; TPR, prot 99.6 6.5E-14 2.2E-18 127.8 22.9 202 147-352 22-223 (243)
51 2h6f_A Protein farnesyltransfe 99.6 2.1E-13 7.1E-18 132.8 27.6 234 147-386 96-348 (382)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5E-19 134.9 18.7 220 161-385 18-243 (275)
53 2vq2_A PILW, putative fimbrial 99.6 3.6E-13 1.2E-17 121.1 27.3 200 183-385 8-210 (225)
54 2q7f_A YRRB protein; TPR, prot 99.6 8.5E-14 2.9E-18 127.0 22.6 201 182-386 22-222 (243)
55 2vq2_A PILW, putative fimbrial 99.6 4.7E-13 1.6E-17 120.3 27.1 203 146-351 6-211 (225)
56 3e4b_A ALGK; tetratricopeptide 99.6 7.5E-14 2.6E-18 140.0 22.4 348 153-529 8-389 (452)
57 4a1s_A PINS, partner of inscut 99.6 9.7E-14 3.3E-18 137.6 20.9 272 219-490 49-371 (411)
58 3sf4_A G-protein-signaling mod 99.6 1.9E-13 6.6E-18 134.9 21.9 278 181-490 7-335 (406)
59 4a1s_A PINS, partner of inscut 99.6 1.7E-13 5.7E-18 135.9 20.5 276 149-456 49-372 (411)
60 3sf4_A G-protein-signaling mod 99.6 2.5E-13 8.5E-18 134.1 21.3 239 145-384 6-294 (406)
61 3ro2_A PINS homolog, G-protein 99.5 3.8E-13 1.3E-17 128.7 21.0 135 393-527 184-332 (338)
62 3ro2_A PINS homolog, G-protein 99.5 4.2E-13 1.4E-17 128.4 19.8 274 186-491 8-332 (338)
63 3ulq_A Response regulator aspa 99.5 3.6E-12 1.2E-16 125.1 24.3 230 258-490 109-367 (383)
64 2ond_A Cleavage stimulation fa 99.5 5.2E-11 1.8E-15 113.0 30.8 236 252-492 8-271 (308)
65 4abn_A Tetratricopeptide repea 99.5 4.5E-12 1.5E-16 127.9 24.6 213 303-523 84-317 (474)
66 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-11 4E-16 107.7 23.3 167 147-316 4-170 (184)
67 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-11 4.2E-16 107.5 23.1 166 321-490 4-169 (184)
68 3ulq_A Response regulator aspa 99.5 5.3E-12 1.8E-16 123.9 23.2 229 224-455 109-367 (383)
69 4e6h_A MRNA 3'-END-processing 99.5 1.2E-09 4.1E-14 113.5 41.4 413 106-528 63-571 (679)
70 2ond_A Cleavage stimulation fa 99.5 5.8E-11 2E-15 112.6 29.4 219 165-386 33-270 (308)
71 4abn_A Tetratricopeptide repea 99.5 4.1E-12 1.4E-16 128.2 21.0 211 199-415 84-315 (474)
72 3nf1_A KLC 1, kinesin light ch 99.5 4.3E-13 1.5E-17 127.1 13.0 169 147-315 26-223 (311)
73 3nf1_A KLC 1, kinesin light ch 99.4 5.7E-13 2E-17 126.3 13.4 170 251-420 26-223 (311)
74 3q15_A PSP28, response regulat 99.4 8.6E-11 2.9E-15 115.0 27.4 230 257-490 106-364 (378)
75 4e6h_A MRNA 3'-END-processing 99.4 3.7E-09 1.3E-13 109.8 39.0 391 131-529 51-535 (679)
76 1hz4_A MALT regulatory protein 99.4 3.4E-10 1.2E-14 110.4 29.2 163 152-314 18-201 (373)
77 1hz4_A MALT regulatory protein 99.4 3.6E-10 1.2E-14 110.2 29.1 299 221-528 17-350 (373)
78 3q15_A PSP28, response regulat 99.4 1.2E-10 4.1E-15 114.0 24.7 307 146-455 8-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.4 1.8E-10 6.1E-15 99.6 22.4 158 224-384 14-171 (186)
80 3as5_A MAMA; tetratricopeptide 99.4 1.4E-10 4.7E-15 100.4 21.4 162 150-314 10-171 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 1.9E-10 6.3E-15 121.0 22.0 166 147-315 8-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.3 1.7E-10 5.7E-15 121.3 21.3 167 109-279 6-172 (723)
83 4i17_A Hypothetical protein; T 99.3 1.1E-09 3.9E-14 98.6 22.4 133 147-280 6-145 (228)
84 4i17_A Hypothetical protein; T 99.2 1.7E-09 5.9E-14 97.4 22.7 150 182-334 6-165 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 1E-10 3.6E-15 108.7 14.9 134 182-315 42-197 (283)
86 1qqe_A Vesicular transport pro 99.2 4.4E-10 1.5E-14 105.6 18.5 165 324-490 79-268 (292)
87 3edt_B KLC 2, kinesin light ch 99.2 1.9E-10 6.7E-15 106.9 14.9 133 218-350 43-197 (283)
88 3mv2_B Coatomer subunit epsilo 99.1 3.5E-08 1.2E-12 91.3 26.3 79 237-315 85-164 (310)
89 3mv2_B Coatomer subunit epsilo 99.1 2.2E-08 7.7E-13 92.5 24.4 179 271-456 85-282 (310)
90 2fo7_A Synthetic consensus TPR 99.1 6.3E-09 2.2E-13 84.4 17.6 129 186-316 4-132 (136)
91 3qky_A Outer membrane assembly 99.1 7.8E-09 2.7E-13 95.2 20.2 187 146-351 13-224 (261)
92 2fo7_A Synthetic consensus TPR 99.1 8E-09 2.7E-13 83.7 18.0 129 150-280 3-131 (136)
93 1qqe_A Vesicular transport pro 99.1 1.8E-09 6.2E-14 101.4 15.6 164 220-385 79-268 (292)
94 3qky_A Outer membrane assembly 99.1 1.1E-08 3.7E-13 94.2 19.7 98 182-280 14-125 (261)
95 3urz_A Uncharacterized protein 99.1 1.3E-08 4.5E-13 90.2 18.7 161 152-316 8-186 (208)
96 3urz_A Uncharacterized protein 99.0 1.1E-08 3.7E-13 90.7 18.2 138 361-505 58-197 (208)
97 3dra_A Protein farnesyltransfe 99.0 3.1E-07 1.1E-11 85.7 27.6 217 165-385 50-286 (306)
98 3dra_A Protein farnesyltransfe 99.0 5E-07 1.7E-11 84.3 28.5 216 235-454 50-285 (306)
99 3rjv_A Putative SEL1 repeat pr 99.0 7E-08 2.4E-12 85.7 21.9 176 305-492 4-198 (212)
100 2pzi_A Probable serine/threoni 99.0 5.5E-09 1.9E-13 110.1 16.3 173 229-406 402-582 (681)
101 2pzi_A Probable serine/threoni 99.0 5.1E-09 1.8E-13 110.4 15.9 174 194-372 402-583 (681)
102 2uy1_A Cleavage stimulation fa 99.0 4.1E-06 1.4E-10 84.3 35.9 354 150-526 17-412 (493)
103 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.5E-08 2.6E-12 86.4 20.8 186 147-352 3-214 (225)
104 2r5s_A Uncharacterized protein 99.0 1.3E-08 4.6E-13 87.5 14.9 161 151-314 9-171 (176)
105 3qou_A Protein YBBN; thioredox 98.9 3.4E-08 1.2E-12 92.3 18.1 163 218-383 117-281 (287)
106 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.5E-12 83.4 21.7 175 341-528 5-198 (212)
107 3qou_A Protein YBBN; thioredox 98.9 5.3E-08 1.8E-12 91.0 18.7 165 147-314 116-282 (287)
108 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-07 5.6E-12 84.2 21.1 187 321-529 3-215 (225)
109 2ifu_A Gamma-SNAP; membrane fu 98.9 3.6E-08 1.2E-12 93.2 17.6 124 295-419 44-182 (307)
110 4ga2_A E3 SUMO-protein ligase 98.9 1E-08 3.5E-13 85.6 11.7 106 232-339 11-116 (150)
111 2r5s_A Uncharacterized protein 98.9 3.5E-08 1.2E-12 84.8 15.5 54 226-279 14-67 (176)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 2.4E-08 8.3E-13 94.4 15.7 226 195-448 3-253 (307)
113 2vsy_A XCC0866; transferase, g 98.9 4.9E-08 1.7E-12 100.9 19.4 154 161-317 2-158 (568)
114 2vsy_A XCC0866; transferase, g 98.9 6E-08 2E-12 100.2 19.3 154 196-352 2-158 (568)
115 4ga2_A E3 SUMO-protein ligase 98.9 9.5E-09 3.2E-13 85.8 9.9 141 193-336 7-148 (150)
116 2uy1_A Cleavage stimulation fa 98.8 2.5E-05 8.6E-10 78.5 34.8 344 126-490 28-412 (493)
117 3q7a_A Farnesyltransferase alp 98.8 5.3E-06 1.8E-10 78.3 27.2 174 160-337 66-257 (349)
118 3q7a_A Farnesyltransferase alp 98.8 4.6E-06 1.6E-10 78.6 26.1 172 197-372 68-257 (349)
119 3u3w_A Transcriptional activat 98.8 1.4E-06 4.8E-11 81.5 22.7 164 363-526 81-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.7 9.3E-07 3.2E-11 78.2 19.2 127 186-316 9-150 (213)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.4E-07 2.5E-11 78.8 18.5 128 150-282 8-151 (213)
122 3u3w_A Transcriptional activat 98.7 3.6E-06 1.2E-10 78.7 24.1 160 225-384 82-264 (293)
123 2qfc_A PLCR protein; TPR, HTH, 98.7 2E-06 6.7E-11 80.5 21.8 163 363-525 81-264 (293)
124 1a17_A Serine/threonine protei 98.7 8.3E-07 2.8E-11 74.8 17.1 126 185-312 15-142 (166)
125 1a17_A Serine/threonine protei 98.7 7.8E-07 2.7E-11 74.9 16.9 131 148-280 13-145 (166)
126 4f3v_A ESX-1 secretion system 98.7 1.5E-06 5.1E-11 79.3 17.9 187 160-351 18-237 (282)
127 1na0_A Designed protein CTPR3; 98.6 1.5E-06 5E-11 69.0 16.1 108 149-258 10-117 (125)
128 1na0_A Designed protein CTPR3; 98.6 1.7E-06 5.8E-11 68.6 16.4 98 183-281 9-106 (125)
129 3gw4_A Uncharacterized protein 98.6 4.9E-07 1.7E-11 79.2 14.3 154 231-384 5-174 (203)
130 4gco_A Protein STI-1; structur 98.6 1.1E-06 3.8E-11 70.5 15.0 103 151-255 16-118 (126)
131 2c2l_A CHIP, carboxy terminus 98.6 2.2E-07 7.5E-12 86.5 12.2 98 182-280 3-100 (281)
132 2qfc_A PLCR protein; TPR, HTH, 98.6 4.8E-06 1.6E-10 77.9 21.4 163 185-348 77-263 (293)
133 4gco_A Protein STI-1; structur 98.6 1.5E-06 5E-11 69.8 15.3 97 184-281 14-110 (126)
134 2lni_A Stress-induced-phosphop 98.6 1E-06 3.5E-11 71.0 14.4 116 147-264 15-130 (133)
135 2c2l_A CHIP, carboxy terminus 98.6 2E-07 6.9E-12 86.7 11.1 194 147-350 3-198 (281)
136 2vyi_A SGTA protein; chaperone 98.6 1.7E-06 6E-11 69.2 15.3 95 185-280 14-108 (131)
137 3gw4_A Uncharacterized protein 98.6 5.8E-07 2E-11 78.7 13.3 98 253-350 67-175 (203)
138 2lni_A Stress-induced-phosphop 98.6 1.3E-06 4.4E-11 70.4 14.4 118 181-300 14-131 (133)
139 2vyi_A SGTA protein; chaperone 98.6 2.1E-06 7.3E-11 68.7 15.5 115 220-336 14-128 (131)
140 3gyz_A Chaperone protein IPGC; 98.6 2.1E-06 7.2E-11 71.2 15.2 97 393-491 37-133 (151)
141 3gyz_A Chaperone protein IPGC; 98.6 5.1E-07 1.8E-11 75.0 11.4 98 183-281 36-133 (151)
142 1p5q_A FKBP52, FK506-binding p 98.6 1.5E-06 5.3E-11 83.0 16.3 124 356-481 146-283 (336)
143 2e2e_A Formate-dependent nitri 98.6 7E-07 2.4E-11 76.5 12.6 120 160-281 22-144 (177)
144 4f3v_A ESX-1 secretion system 98.6 1.8E-06 6.2E-11 78.7 15.7 126 293-421 108-237 (282)
145 2vgx_A Chaperone SYCD; alterna 98.5 5.9E-07 2E-11 74.5 11.2 100 391-492 20-119 (148)
146 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.9E-11 75.1 13.2 119 231-351 23-144 (177)
147 2fbn_A 70 kDa peptidylprolyl i 98.5 3.5E-07 1.2E-11 80.1 9.3 146 230-377 16-176 (198)
148 2fbn_A 70 kDa peptidylprolyl i 98.5 2.6E-07 8.9E-12 80.9 8.4 132 394-528 40-187 (198)
149 1p5q_A FKBP52, FK506-binding p 98.5 3.6E-06 1.2E-10 80.4 16.9 87 219-306 197-283 (336)
150 2vgx_A Chaperone SYCD; alterna 98.5 7.9E-07 2.7E-11 73.8 10.8 97 183-280 21-117 (148)
151 3dss_A Geranylgeranyl transfer 98.5 0.00018 6.2E-09 67.5 27.7 17 475-491 288-304 (331)
152 3sz7_A HSC70 cochaperone (SGT) 98.4 6E-06 2.1E-10 69.6 14.6 99 392-492 11-109 (164)
153 3dss_A Geranylgeranyl transfer 98.4 0.00037 1.3E-08 65.3 27.8 130 166-298 48-190 (331)
154 3upv_A Heat shock protein STI1 98.4 6.5E-06 2.2E-10 65.8 13.9 96 184-280 5-100 (126)
155 3upv_A Heat shock protein STI1 98.4 7.6E-06 2.6E-10 65.4 14.3 94 221-315 7-100 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.4 1.6E-05 5.6E-10 62.0 15.9 97 184-281 5-101 (118)
157 1elw_A TPR1-domain of HOP; HOP 98.4 2E-05 6.7E-10 61.6 16.1 104 150-255 6-109 (118)
158 2xcb_A PCRH, regulatory protei 98.4 3.5E-06 1.2E-10 69.1 12.0 96 253-350 19-114 (142)
159 4gcn_A Protein STI-1; structur 98.4 7.5E-06 2.6E-10 65.7 13.3 107 394-504 10-122 (127)
160 2xcb_A PCRH, regulatory protei 98.4 8.5E-06 2.9E-10 66.8 13.5 100 391-492 17-116 (142)
161 4b4t_Q 26S proteasome regulato 98.3 3E-05 1E-09 76.7 19.9 197 259-455 11-244 (434)
162 2kck_A TPR repeat; tetratricop 98.3 5.3E-06 1.8E-10 64.3 11.2 97 393-491 7-106 (112)
163 3q49_B STIP1 homology and U bo 98.3 2E-05 6.7E-10 63.8 14.6 98 182-280 8-105 (137)
164 3q49_B STIP1 homology and U bo 98.3 2.2E-05 7.6E-10 63.5 14.8 100 390-491 7-106 (137)
165 4gcn_A Protein STI-1; structur 98.3 1.6E-05 5.6E-10 63.7 13.7 51 228-278 18-68 (127)
166 3sz7_A HSC70 cochaperone (SGT) 98.3 1.8E-05 6E-10 66.7 14.6 98 183-281 11-108 (164)
167 1elr_A TPR2A-domain of HOP; HO 98.3 9.6E-06 3.3E-10 64.8 12.5 95 185-280 6-107 (131)
168 2kck_A TPR repeat; tetratricop 98.3 5.6E-06 1.9E-10 64.1 10.7 27 252-278 76-103 (112)
169 4b4t_Q 26S proteasome regulato 98.3 3.8E-05 1.3E-09 76.0 19.1 197 294-490 11-244 (434)
170 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.9E-10 64.3 12.6 97 220-316 6-108 (131)
171 2dba_A Smooth muscle cell asso 98.3 3.5E-05 1.2E-09 63.1 15.3 110 146-257 26-138 (148)
172 1hxi_A PEX5, peroxisome target 98.3 1.2E-05 4.1E-10 63.9 11.8 93 432-527 22-114 (121)
173 2dba_A Smooth muscle cell asso 98.2 3.8E-05 1.3E-09 62.9 15.2 97 182-280 27-127 (148)
174 3ro3_A PINS homolog, G-protein 98.2 1.3E-05 4.4E-10 66.7 11.2 129 185-313 11-155 (164)
175 1hxi_A PEX5, peroxisome target 98.2 1.9E-05 6.4E-10 62.7 11.4 87 192-279 26-112 (121)
176 3ro3_A PINS homolog, G-protein 98.2 1.7E-05 5.9E-10 65.9 11.8 99 429-527 51-158 (164)
177 2xev_A YBGF; tetratricopeptide 98.2 8.3E-05 2.8E-09 59.3 15.1 90 155-246 9-104 (129)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.7E-05 9.4E-10 77.7 14.1 144 336-482 248-405 (457)
179 2xev_A YBGF; tetratricopeptide 98.1 0.00016 5.6E-09 57.5 15.5 93 188-281 7-105 (129)
180 3k9i_A BH0479 protein; putativ 98.1 5.4E-06 1.8E-10 65.4 6.2 87 405-492 3-91 (117)
181 1ihg_A Cyclophilin 40; ppiase 98.1 5.1E-05 1.7E-09 73.3 14.1 139 358-519 224-362 (370)
182 3rkv_A Putative peptidylprolyl 98.0 5.8E-05 2E-09 63.3 12.4 70 426-499 62-131 (162)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.9E-05 2.7E-09 74.3 15.3 122 184-307 269-405 (457)
184 1wao_1 Serine/threonine protei 98.0 2.4E-05 8.3E-10 78.5 11.2 117 402-522 16-134 (477)
185 3k9i_A BH0479 protein; putativ 98.0 1.2E-05 4.1E-10 63.4 7.2 82 162-244 4-87 (117)
186 1ihg_A Cyclophilin 40; ppiase 98.0 6.4E-05 2.2E-09 72.6 13.8 89 218-307 273-361 (370)
187 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.6E-10 79.7 9.8 118 157-276 15-134 (477)
188 1dce_A Protein (RAB geranylger 98.0 0.00034 1.2E-08 71.5 19.0 170 200-373 46-242 (567)
189 1dce_A Protein (RAB geranylger 98.0 0.0004 1.4E-08 71.0 19.3 175 162-340 43-244 (567)
190 3rkv_A Putative peptidylprolyl 97.9 0.00015 5.2E-09 60.6 13.4 97 184-280 12-125 (162)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 3E-05 1E-09 74.0 9.7 149 357-528 179-329 (338)
192 2hr2_A Hypothetical protein; a 97.9 0.0002 6.8E-09 58.9 12.6 97 394-490 13-130 (159)
193 1klx_A Cysteine rich protein B 97.9 0.00056 1.9E-08 55.5 14.8 111 371-492 9-127 (138)
194 2hr2_A Hypothetical protein; a 97.8 0.00035 1.2E-08 57.5 12.6 94 184-279 12-129 (159)
195 1klx_A Cysteine rich protein B 97.8 0.001 3.6E-08 53.8 15.3 110 337-457 10-127 (138)
196 2kat_A Uncharacterized protein 97.8 0.00011 3.9E-09 57.3 9.2 80 410-491 3-82 (115)
197 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00011 3.6E-09 70.2 10.5 147 150-316 181-328 (338)
198 3n71_A Histone lysine methyltr 97.8 0.00018 6E-09 71.9 12.2 126 402-527 319-464 (490)
199 3n71_A Histone lysine methyltr 97.7 0.00015 5.3E-09 72.3 10.5 123 297-419 319-462 (490)
200 2l6j_A TPR repeat-containing p 97.6 7.6E-05 2.6E-09 57.6 6.2 92 148-242 4-102 (111)
201 2kat_A Uncharacterized protein 97.6 0.00045 1.5E-08 53.8 10.5 80 445-527 3-82 (115)
202 2l6j_A TPR repeat-containing p 97.6 4.8E-05 1.6E-09 58.8 4.6 65 184-249 5-69 (111)
203 1na3_A Designed protein CTPR2; 97.6 0.00095 3.3E-08 49.0 11.4 82 427-511 9-90 (91)
204 1na3_A Designed protein CTPR2; 97.6 0.00083 2.8E-08 49.4 11.0 73 186-259 12-84 (91)
205 1zu2_A Mitochondrial import re 97.5 0.00019 6.3E-09 59.0 7.2 111 407-528 17-148 (158)
206 3ma5_A Tetratricopeptide repea 97.5 0.00047 1.6E-08 52.2 8.4 64 426-490 6-69 (100)
207 3ma5_A Tetratricopeptide repea 97.3 0.0014 4.9E-08 49.5 9.7 67 459-527 4-70 (100)
208 1zu2_A Mitochondrial import re 97.3 0.00073 2.5E-08 55.4 7.7 83 233-316 17-120 (158)
209 3mkq_A Coatomer beta'-subunit; 97.3 0.0076 2.6E-07 64.6 18.1 153 156-346 607-760 (814)
210 3mkq_A Coatomer beta'-subunit; 97.2 0.022 7.4E-07 61.1 20.3 75 291-383 633-707 (814)
211 3ly7_A Transcriptional activat 97.0 0.016 5.6E-07 54.5 15.1 74 424-502 274-347 (372)
212 3ly7_A Transcriptional activat 96.9 0.022 7.4E-07 53.7 14.6 74 248-325 273-346 (372)
213 3qww_A SET and MYND domain-con 96.7 0.0052 1.8E-07 60.2 9.5 87 404-490 310-410 (433)
214 2kc7_A BFR218_protein; tetratr 96.6 0.0057 2E-07 45.7 7.2 26 185-210 37-62 (99)
215 3mkq_B Coatomer subunit alpha; 96.6 0.22 7.4E-06 41.4 16.7 105 154-278 11-115 (177)
216 2kc7_A BFR218_protein; tetratr 96.5 0.015 5.1E-07 43.3 8.9 52 229-280 11-63 (99)
217 3qww_A SET and MYND domain-con 96.4 0.0083 2.8E-07 58.7 8.8 62 288-349 341-409 (433)
218 3u64_A Protein TP_0956; tetrat 96.4 0.42 1.4E-05 43.2 18.9 93 339-433 180-283 (301)
219 4ady_A RPN2, 26S proteasome re 96.4 1.3 4.3E-05 47.2 26.6 26 221-246 233-258 (963)
220 3qwp_A SET and MYND domain-con 96.4 0.021 7E-07 56.0 11.3 90 261-350 296-399 (429)
221 3qwp_A SET and MYND domain-con 96.3 0.031 1.1E-06 54.7 12.3 89 227-315 296-399 (429)
222 3bee_A Putative YFRE protein; 96.3 0.043 1.5E-06 40.6 10.1 68 424-492 3-73 (93)
223 1pc2_A Mitochondria fission pr 96.3 0.046 1.6E-06 44.2 10.9 87 408-499 14-105 (152)
224 3bee_A Putative YFRE protein; 96.2 0.09 3.1E-06 38.8 11.4 66 390-456 4-72 (93)
225 1wy6_A Hypothetical protein ST 96.1 0.34 1.2E-05 37.8 17.0 66 462-529 91-156 (172)
226 1wy6_A Hypothetical protein ST 96.1 0.35 1.2E-05 37.7 15.4 137 195-352 19-155 (172)
227 3mkq_B Coatomer subunit alpha; 96.1 0.18 6.1E-06 41.9 13.5 99 228-346 15-113 (177)
228 2v5f_A Prolyl 4-hydroxylase su 95.8 0.1 3.5E-06 39.4 10.4 65 147-211 4-74 (104)
229 2v5f_A Prolyl 4-hydroxylase su 95.7 0.12 4.1E-06 38.9 10.6 66 426-491 4-75 (104)
230 4ady_A RPN2, 26S proteasome re 95.5 2.4 8.3E-05 45.1 22.5 152 332-489 500-656 (963)
231 3lpz_A GET4 (YOR164C homolog); 95.4 1.7 5.7E-05 40.2 22.1 112 149-275 36-159 (336)
232 1pc2_A Mitochondria fission pr 95.2 0.16 5.4E-06 41.1 10.0 67 249-316 29-100 (152)
233 3u64_A Protein TP_0956; tetrat 95.2 0.33 1.1E-05 43.9 12.9 53 336-388 218-271 (301)
234 4h7y_A Dual specificity protei 94.9 0.7 2.4E-05 36.9 12.5 102 321-424 12-126 (161)
235 4h7y_A Dual specificity protei 94.4 0.47 1.6E-05 37.9 10.4 67 439-508 72-138 (161)
236 3lvg_A Clathrin heavy chain 1; 94.4 0.0032 1.1E-07 60.7 -2.3 347 147-514 82-512 (624)
237 1nzn_A CGI-135 protein, fissio 93.9 0.7 2.4E-05 35.9 10.4 88 406-498 15-107 (126)
238 4gns_B Protein CSD3, chitin bi 93.6 0.83 2.8E-05 47.6 13.4 130 149-278 249-397 (754)
239 2wpv_A GET4, UPF0363 protein Y 93.3 4.8 0.00016 36.9 20.0 113 149-276 34-158 (312)
240 4fhn_B Nucleoporin NUP120; pro 93.0 3.1 0.00011 46.3 18.0 28 251-278 841-868 (1139)
241 4gns_B Protein CSD3, chitin bi 92.8 0.59 2E-05 48.7 10.9 52 471-524 346-397 (754)
242 2wpv_A GET4, UPF0363 protein Y 92.8 5.8 0.0002 36.4 19.2 179 228-454 23-215 (312)
243 4fhn_B Nucleoporin NUP120; pro 92.7 2 6.9E-05 47.7 15.9 55 188-247 817-871 (1139)
244 1nzn_A CGI-135 protein, fissio 92.5 0.7 2.4E-05 35.9 8.4 24 293-316 80-103 (126)
245 1v54_E Cytochrome C oxidase po 92.3 0.69 2.4E-05 33.9 7.4 62 199-260 26-87 (109)
246 4b4t_P 26S proteasome regulato 91.6 11 0.00037 36.8 22.9 51 161-211 29-84 (445)
247 2ff4_A Probable regulatory pro 91.2 0.81 2.8E-05 43.9 9.3 76 428-504 172-251 (388)
248 4b4t_P 26S proteasome regulato 91.0 12 0.00041 36.4 22.8 173 141-314 49-245 (445)
249 2ff4_A Probable regulatory pro 90.6 1.1 3.7E-05 43.0 9.6 71 255-326 174-249 (388)
250 2y69_E Cytochrome C oxidase su 89.6 2.3 7.9E-05 33.1 8.5 59 201-259 71-129 (152)
251 1qsa_A Protein (soluble lytic 89.3 20 0.0007 36.4 28.8 22 505-526 388-409 (618)
252 3lvg_A Clathrin heavy chain 1; 89.2 7.8E-06 2.7E-10 78.3 -26.7 262 219-523 55-316 (624)
253 3ffl_A Anaphase-promoting comp 88.5 1.7 5.9E-05 35.4 7.6 27 498-524 122-148 (167)
254 3o48_A Mitochondria fission 1 88.3 6.7 0.00023 30.6 10.5 75 423-500 36-113 (134)
255 1v54_E Cytochrome C oxidase po 87.9 6.3 0.00022 28.9 9.4 63 442-506 25-87 (109)
256 1zbp_A Hypothetical protein VP 85.3 8.9 0.0003 34.0 11.0 55 157-212 6-60 (273)
257 1y8m_A FIS1; mitochondria, unk 85.2 12 0.00042 29.5 13.0 73 424-499 36-111 (144)
258 1qsa_A Protein (soluble lytic 84.9 36 0.0012 34.6 36.1 89 140-234 64-152 (618)
259 1zbp_A Hypothetical protein VP 84.5 21 0.00073 31.6 13.6 113 401-527 6-129 (273)
260 2y69_E Cytochrome C oxidase su 84.5 9.9 0.00034 29.6 9.4 62 443-506 69-130 (152)
261 3o48_A Mitochondria fission 1 84.4 9.1 0.00031 29.8 9.4 66 251-316 39-107 (134)
262 3ffl_A Anaphase-promoting comp 82.1 9.5 0.00032 31.1 9.1 55 189-243 26-88 (167)
263 1y8m_A FIS1; mitochondria, unk 81.7 18 0.0006 28.6 10.8 67 250-316 37-106 (144)
264 2p58_C Putative type III secre 81.5 12 0.00041 27.4 8.3 50 262-317 50-99 (116)
265 3lpz_A GET4 (YOR164C homolog); 80.8 35 0.0012 31.5 24.0 25 426-450 135-159 (336)
266 3esl_A Checkpoint serine/threo 80.4 16 0.00053 30.9 10.1 58 440-498 92-150 (202)
267 4b4t_R RPN7, 26S proteasome re 80.4 19 0.00066 34.8 12.6 96 291-386 135-237 (429)
268 2p58_C Putative type III secre 80.0 11 0.00038 27.6 7.7 51 296-352 49-99 (116)
269 2uwj_G Type III export protein 79.2 12 0.0004 27.4 7.6 50 262-317 49-98 (115)
270 4b4t_R RPN7, 26S proteasome re 77.7 18 0.00062 35.0 11.4 61 359-419 133-195 (429)
271 2uwj_G Type III export protein 76.7 11 0.00037 27.6 6.8 51 296-352 48-98 (115)
272 3eiq_C Programmed cell death p 76.2 28 0.00095 32.5 11.6 64 360-424 220-285 (358)
273 3esl_A Checkpoint serine/threo 76.1 25 0.00087 29.6 10.2 55 336-390 93-148 (202)
274 3txn_A 26S proteasome regulato 75.0 58 0.002 30.9 24.5 166 218-384 19-208 (394)
275 3eiq_C Programmed cell death p 70.5 70 0.0024 29.8 13.0 66 395-461 220-287 (358)
276 4a1g_A Mitotic checkpoint seri 68.5 36 0.0012 27.2 9.0 52 445-497 83-135 (152)
277 2wvi_A Mitotic checkpoint seri 65.2 49 0.0017 26.8 9.3 73 424-500 60-133 (164)
278 2zu6_B Programmed cell death p 64.8 81 0.0028 28.7 11.8 25 151-175 6-30 (307)
279 4b4t_S RPN3, 26S proteasome re 63.4 22 0.00075 35.0 8.1 64 218-281 231-299 (523)
280 1wdy_A 2-5A-dependent ribonucl 62.7 14 0.00048 32.7 6.6 18 155-172 9-26 (285)
281 4fke_A Aminopeptidase N; zinc 62.4 80 0.0027 33.9 13.2 157 152-315 690-859 (909)
282 3ctd_A Putative ATPase, AAA fa 62.1 72 0.0025 27.0 10.1 68 254-321 34-109 (213)
283 3txn_A 26S proteasome regulato 62.0 1.1E+02 0.0037 29.0 28.1 167 183-349 19-208 (394)
284 3ltm_A Alpha-REP4; protein eng 59.3 77 0.0026 26.4 18.6 91 391-490 94-184 (211)
285 2wvi_A Mitotic checkpoint seri 57.9 74 0.0025 25.8 10.1 50 167-216 79-129 (164)
286 4a1g_A Mitotic checkpoint seri 57.5 72 0.0025 25.5 12.2 115 120-250 18-134 (152)
287 2d2s_A Exocyst complex compone 57.4 45 0.0015 29.0 8.4 103 128-243 8-116 (235)
288 2d2s_A Exocyst complex compone 55.3 94 0.0032 26.9 10.1 88 189-278 24-117 (235)
289 4aez_C MAD3, mitotic spindle c 52.8 72 0.0025 27.3 8.6 51 200-250 131-183 (223)
290 3ltm_A Alpha-REP4; protein eng 52.5 1E+02 0.0034 25.7 19.3 17 217-233 32-48 (211)
291 1k1a_A B-cell lymphoma 3-encod 52.0 33 0.0011 29.4 6.9 21 297-317 16-36 (241)
292 1ug3_A EIF4GI, eukaryotic prot 51.8 79 0.0027 29.2 9.7 24 222-245 15-38 (339)
293 3eu9_A Huntingtin-interacting 51.5 26 0.00089 29.9 6.2 15 227-241 48-62 (240)
294 3rjo_A Endoplasmic reticulum a 51.4 1.7E+02 0.0057 27.9 13.9 145 147-300 196-353 (419)
295 4b4t_S RPN3, 26S proteasome re 50.5 39 0.0013 33.3 7.5 25 150-174 233-257 (523)
296 3d5l_A Regulatory protein RECX 50.4 83 0.0028 27.0 9.0 50 409-459 93-142 (221)
297 1k1a_A B-cell lymphoma 3-encod 50.0 41 0.0014 28.7 7.3 85 155-243 13-101 (241)
298 4aez_C MAD3, mitotic spindle c 49.9 31 0.0011 29.6 6.0 54 444-498 131-185 (223)
299 3hra_A Ankyrin repeat family p 49.0 15 0.00052 30.6 4.1 14 159-172 13-26 (201)
300 1wdy_A 2-5A-dependent ribonucl 47.9 43 0.0015 29.4 7.2 50 189-242 8-60 (285)
301 3pvs_A Replication-associated 47.8 2E+02 0.0068 27.7 13.4 141 302-458 166-326 (447)
302 2nsz_A Programmed cell death p 47.6 94 0.0032 23.9 8.9 64 255-319 10-75 (129)
303 4g8k_A 2-5A-dependent ribonucl 46.8 91 0.0031 28.3 9.5 20 153-172 27-46 (337)
304 2r9g_A AAA ATPase, central reg 46.4 1.3E+02 0.0045 25.2 10.7 37 264-301 26-62 (204)
305 3c1d_A Protein ORAA, regulator 45.8 1.1E+02 0.0039 24.4 10.4 49 339-389 47-95 (159)
306 2zu6_B Programmed cell death p 45.8 1.7E+02 0.0059 26.5 12.7 25 221-245 6-30 (307)
307 4gq2_M Nucleoporin NUP120; bet 44.5 1.3E+02 0.0045 32.5 11.3 49 323-371 898-950 (950)
308 2ion_A PDCD4, programmed cell 44.1 88 0.003 24.9 7.5 64 255-319 12-77 (152)
309 2f6m_A Suppressor protein STP2 43.7 37 0.0013 22.5 4.2 46 150-196 4-49 (65)
310 3pvs_A Replication-associated 43.5 2.3E+02 0.0079 27.3 13.7 19 266-284 269-287 (447)
311 3bge_A Predicted ATPase; struc 42.5 1.5E+02 0.0051 24.8 9.4 38 264-301 19-56 (201)
312 1bpo_A Protein (clathrin); cla 41.7 1E+02 0.0035 29.8 8.6 101 141-243 354-454 (494)
313 1bpo_A Protein (clathrin); cla 40.2 1.8E+02 0.0061 28.2 9.9 105 161-269 342-446 (494)
314 3e3v_A Regulatory protein RECX 40.0 1.2E+02 0.0042 24.8 8.1 27 411-437 52-78 (177)
315 2xig_A Ferric uptake regulatio 39.4 1.4E+02 0.0047 23.6 8.1 60 277-337 17-76 (150)
316 2ion_A PDCD4, programmed cell 38.7 1.5E+02 0.005 23.6 8.9 63 222-284 13-77 (152)
317 2fe3_A Peroxide operon regulat 38.5 1.1E+02 0.0039 23.9 7.4 58 174-232 13-70 (145)
318 3jxi_A Vanilloid receptor-rela 38.3 17 0.00057 31.9 2.7 23 193-215 12-34 (260)
319 3ltj_A Alpharep-4; protein eng 37.2 1.7E+02 0.0058 23.9 20.3 108 390-510 88-195 (201)
320 3kea_A K1L; tropism, ANK repea 36.1 57 0.0019 29.1 6.0 16 331-346 167-182 (285)
321 2r9g_A AAA ATPase, central reg 35.7 2E+02 0.0067 24.1 8.7 18 161-178 27-44 (204)
322 2nsz_A Programmed cell death p 35.4 1.5E+02 0.0051 22.7 10.3 63 222-284 11-75 (129)
323 1ug3_A EIF4GI, eukaryotic prot 34.5 2.7E+02 0.0094 25.5 11.7 26 185-210 13-38 (339)
324 1oyz_A Hypothetical protein YI 34.4 2.3E+02 0.008 24.6 24.0 122 355-490 140-262 (280)
325 3t8k_A Uncharacterized protein 34.1 1.4E+02 0.0047 24.5 7.7 24 332-355 45-68 (186)
326 2ijq_A Hypothetical protein; s 34.1 1.8E+02 0.0063 23.4 8.0 51 369-419 44-102 (161)
327 2xig_A Ferric uptake regulatio 33.3 1.2E+02 0.0041 24.0 6.8 60 173-233 17-76 (150)
328 3eyy_A Putative iron uptake re 33.3 95 0.0032 24.4 6.1 57 174-232 10-66 (145)
329 2xdt_A Endoplasmic reticulum a 32.8 4.8E+02 0.016 27.8 14.5 91 149-246 681-778 (897)
330 3l6a_A Eukaryotic translation 32.6 3.1E+02 0.011 25.5 12.3 25 221-245 15-39 (364)
331 2fe3_A Peroxide operon regulat 32.2 1.7E+02 0.0057 22.9 7.5 60 277-337 12-71 (145)
332 2qx5_A Nucleoporin NIC96; mRNA 32.2 4.3E+02 0.015 27.0 17.6 23 153-175 157-179 (661)
333 1mzb_A Ferric uptake regulatio 31.9 1.1E+02 0.0038 23.6 6.3 58 174-232 9-67 (136)
334 3ltj_A Alpharep-4; protein eng 31.6 2.1E+02 0.0072 23.3 21.0 17 286-302 89-105 (201)
335 3bu8_A Telomeric repeat-bindin 31.6 2.4E+02 0.0082 23.9 13.9 19 227-245 123-141 (235)
336 3kea_A K1L; tropism, ANK repea 30.8 1E+02 0.0034 27.4 6.7 188 155-359 35-225 (285)
337 3ctd_A Putative ATPase, AAA fa 30.4 2.5E+02 0.0085 23.7 8.5 73 149-221 33-113 (213)
338 2rfa_A Transient receptor pote 30.3 1.4E+02 0.0047 25.1 7.4 21 332-352 161-181 (232)
339 3jxi_A Vanilloid receptor-rela 29.8 24 0.00081 30.9 2.2 22 297-318 12-33 (260)
340 4gq2_M Nucleoporin NUP120; bet 29.8 5.5E+02 0.019 27.6 13.9 108 224-336 816-950 (950)
341 4ets_A Ferric uptake regulatio 29.8 1.2E+02 0.004 24.5 6.2 57 176-233 26-84 (162)
342 3eu9_A Huntingtin-interacting 29.5 16 0.00054 31.4 1.0 25 505-529 214-238 (240)
343 2chq_A Replication factor C sm 28.7 3.1E+02 0.011 24.3 13.0 43 132-176 167-209 (319)
344 1mzb_A Ferric uptake regulatio 28.4 1.5E+02 0.0051 22.8 6.5 60 278-338 9-69 (136)
345 2rfa_A Transient receptor pote 28.2 1.1E+02 0.0036 25.8 6.2 16 438-453 205-220 (232)
346 2w57_A Ferric uptake regulatio 27.6 1.2E+02 0.0041 24.0 5.9 60 173-233 7-67 (150)
347 4b4t_O 26S proteasome regulato 27.4 3.6E+02 0.012 25.4 10.1 58 252-309 127-191 (393)
348 3d5l_A Regulatory protein RECX 27.2 2.9E+02 0.0099 23.5 10.3 50 339-389 93-142 (221)
349 3eyy_A Putative iron uptake re 27.1 1.3E+02 0.0045 23.5 6.0 59 277-337 9-67 (145)
350 3t8k_A Uncharacterized protein 26.5 1.7E+02 0.0057 23.9 6.9 26 296-321 44-69 (186)
351 3kae_A CDC27, possible protein 26.2 2.7E+02 0.0092 22.8 9.4 67 436-505 71-154 (242)
352 3bge_A Predicted ATPase; struc 26.2 2.9E+02 0.0098 23.1 8.4 20 161-180 20-39 (201)
353 4fke_A Aminopeptidase N; zinc 26.1 6.2E+02 0.021 27.0 16.8 159 326-491 690-860 (909)
354 3lxu_X Tripeptidyl-peptidase 2 25.9 2.4E+02 0.0082 31.5 9.3 80 443-527 1265-1345(1354)
355 2crb_A Nuclear receptor bindin 25.0 1.3E+02 0.0045 21.5 4.7 25 464-488 17-41 (97)
356 2ijq_A Hypothetical protein; s 24.9 2.7E+02 0.0092 22.4 8.6 50 162-211 46-103 (161)
357 3se6_A Endoplasmic reticulum a 24.9 6.7E+02 0.023 27.0 14.6 146 147-299 747-903 (967)
358 2w57_A Ferric uptake regulatio 24.2 1.7E+02 0.0057 23.1 6.1 61 277-338 7-68 (150)
359 1wty_A Hypothetical protein TT 24.0 1.4E+02 0.005 22.3 5.5 77 407-490 3-80 (119)
360 3lxu_X Tripeptidyl-peptidase 2 23.5 8.1E+02 0.028 27.4 14.1 79 338-419 1265-1343(1354)
361 3aji_A 26S proteasome non-ATPa 23.5 1.6E+02 0.0053 24.7 6.4 17 227-243 12-28 (231)
362 3hra_A Ankyrin repeat family p 23.4 64 0.0022 26.5 3.8 14 229-242 13-26 (201)
363 1g1e_B SIN3A; four-helix bundl 23.4 1.5E+02 0.0051 21.0 5.0 30 234-263 10-39 (89)
364 1n11_A Ankyrin; clathrin, BAND 23.1 1.3E+02 0.0043 28.6 6.3 18 155-172 51-68 (437)
365 4ets_A Ferric uptake regulatio 22.7 1.7E+02 0.0057 23.5 5.9 59 279-338 25-85 (162)
366 2fu4_A Ferric uptake regulatio 22.2 1.9E+02 0.0065 19.6 6.6 58 278-336 8-66 (83)
367 3c1d_A Protein ORAA, regulator 22.1 3E+02 0.01 21.9 11.4 51 408-460 46-96 (159)
368 2f6m_A Suppressor protein STP2 21.9 1.5E+02 0.0052 19.6 4.3 45 465-511 5-49 (65)
369 3e3v_A Regulatory protein RECX 21.7 3.3E+02 0.011 22.2 10.7 48 340-388 51-98 (177)
370 3b7b_A Euchromatic histone-lys 21.6 60 0.002 27.6 3.2 18 403-420 218-235 (237)
371 3aji_A 26S proteasome non-ATPa 21.5 1.7E+02 0.0059 24.4 6.3 19 155-173 10-28 (231)
372 3mwm_A ZUR, putative metal upt 20.4 1.2E+02 0.004 23.6 4.4 43 155-197 20-62 (139)
373 3i5p_A Nucleoporin NUP170; hel 20.3 6.2E+02 0.021 24.9 10.6 22 434-455 347-368 (525)
374 2o03_A Probable zinc uptake re 20.2 1.3E+02 0.0043 23.1 4.5 33 162-194 24-56 (131)
375 3ygs_P Procaspase 9; apoptosis 20.2 1.4E+02 0.0049 21.5 4.5 36 163-202 52-87 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-34 Score=303.58 Aligned_cols=390 Identities=8% Similarity=0.022 Sum_probs=303.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC---------------CCCCCHHHHHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR---------------NVEITVDTFSILVR 191 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~ 191 (534)
++.+|+.+|+.+... +.++.+++.++.+|.+.|++++|.++|+++... +.+.+..+|+.++.
T Consensus 132 ~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (597)
T 2xpi_A 132 DYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208 (597)
T ss_dssp CHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHH
Confidence 455555555554321 345556666666666666666666666532111 11223556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------HHHHHhcCC
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV--------------------------------------ISILCRKRR 233 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------l~~~~~~g~ 233 (534)
+|.+.|++++|+++|++|.+.+ +.+...+..+ +..|.+.|+
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 6666666666666666665543 1122222222 233345556
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+++|.++|+++... +++..+|+.++.+|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|.++++++
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666665543 478889999999999999999999999999876533 6778899999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009470 314 LEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS 393 (534)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 393 (534)
.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 442 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHL 442 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSH
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchH
Confidence 8664 5578899999999999999999999999998764 45688999999999999999999999999998753 4788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN----EVEPN--VNTYRI 467 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~--~~~~~~ 467 (534)
+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++++++.+. +..|+ ..+|..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 99999999999999999999999998765 347899999999999999999999999999875 66777 789999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++++..
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999875 4578899999999999999999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-34 Score=301.78 Aligned_cols=393 Identities=7% Similarity=-0.043 Sum_probs=344.9
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 124 HGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 124 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
..+.+.+|+..|+.+... .++..++..++..|.+.|++++|..+|+.+... +.+..+++.++.+|.+.|++++|+
T Consensus 96 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 170 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGAL 170 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHH
Confidence 345789999999998853 347788999999999999999999999988654 568899999999999999999999
Q ss_pred HHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH----------
Q 009470 204 HAFNRME-EY--------------GCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNL---------- 258 (534)
Q Consensus 204 ~~~~~m~-~~--------------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l---------- 258 (534)
++|+++. .. |.+.+..+|+.++.+|.+.|++++|.+.|+++....+.+...+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 250 (597)
T 2xpi_A 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADE 250 (597)
T ss_dssp HHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHH
T ss_pred HHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchh
Confidence 9998532 21 2234578999999999999999999999999987655555555444
Q ss_pred ----------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 259 ----------------------------VRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 259 ----------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
+..|.+.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 55566889999999999999865 578999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009470 311 AEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390 (534)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 390 (534)
+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+... .
T Consensus 329 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 405 (597)
T 2xpi_A 329 TKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-Q 405 (597)
T ss_dssp HHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-C
Confidence 9999876 4478889999999999999999999999998764 66789999999999999999999999999988643 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++++++.+.. +.+..+|..++.
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 483 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGV 483 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 68899999999999999999999999999875 3488999999999999999999999999999864 557899999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 471 MYCGMGHWNNAYKYIREMIEEK---CLKPG--SSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
.|.+.|++++|+++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999998862 24677 7899999999999999999999999998875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=6.3e-28 Score=238.60 Aligned_cols=376 Identities=14% Similarity=0.080 Sum_probs=292.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVH 204 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 204 (534)
.+++++|+..+..+.+.. +.+...+..+..++.+.|++++|...++...+.. +.+..+|..+...|.+.|++++|++
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456788888888776542 3456677777788888888888888888777765 5677888888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 205 AFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ 284 (534)
Q Consensus 205 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 284 (534)
.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++....+.+...+..+...+...|++++|.+.|+++.+...
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 166 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP- 166 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-
Confidence 888887753 334567888888888888888888888887776666777788888888888888888888888877532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 009470 285 PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLI 364 (534)
Q Consensus 285 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 364 (534)
-+..+|..+...+.+.|++++|.+.|+++.+.+ +.+...|..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 256778888888888888888888888888765 3457778888888888888888888888887764 44577788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009470 365 DCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTD 444 (534)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (534)
.+|.+.|++++|...++++.+.+. .+..+|..+..++.+.|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888887643 256778888888888888888888888887754 457778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG 512 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 512 (534)
+|.+.++++.+.. +.+..++..+...+.+.|++++|++.++++++.. +.+...|..+...+...|
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHhHHHHHHHcc
Confidence 8888888887752 4567788888888888888888888888888743 334566666666666554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.3e-27 Score=236.36 Aligned_cols=364 Identities=12% Similarity=0.046 Sum_probs=324.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999988875 5577888999999999999999999999988754 5678899999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+++|.+.|+++....+.+..+|..++..+.+.|++++|.+.|+++.+.+.. +...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999998877778889999999999999999999999999886422 4567778888899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009470 314 LEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS 393 (534)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 393 (534)
.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...++++.+... -+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHH
Confidence 9875 4468899999999999999999999999999875 55678899999999999999999999999988753 3678
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
++..+..++.+.|++++|.+.++++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 3367889999999999999999999999999864 678899999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 474 GMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+.|++++|++.++++++.. +.+...+..+...+.+.|++++|.+.++++++.
T Consensus 317 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999853 456788999999999999999999999999874
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.3e-30 Score=263.22 Aligned_cols=186 Identities=20% Similarity=0.378 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ---------ITRAHDVFAEMLEVGCEPNSIT 324 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~A~~~~~~m~~~~~~~~~~~ 324 (534)
.++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +++|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455555555555555555555555555555555555555555554433 3445555555555555555555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009470 325 FNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK 404 (534)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 404 (534)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009470 405 LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT 439 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 439 (534)
.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-30 Score=261.74 Aligned_cols=206 Identities=14% Similarity=0.156 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCC---------H
Q 009470 200 AEAVHAFNRMEEYGCAPDK-IAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGN---------I 268 (534)
Q Consensus 200 ~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~---------~ 268 (534)
..+..+.+++.+.+....+ ..++.+|++|++.|++++|.++|++|.+ +++||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777776554 4688999999999999999999999975 799999999999999987764 7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009470 349 KRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 349 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 405 (534)
.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998864
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.1e-24 Score=216.88 Aligned_cols=405 Identities=9% Similarity=0.027 Sum_probs=299.4
Q ss_pred HHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 112 VRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVR 191 (534)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 191 (534)
....+.....+...+++.+|+..|+.+.... |++..+..+..++.+.|++++|...++++.+.+ +.+..+|..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 3444555555556678999999999998754 478899999999999999999999999988876 567789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh---------------------------
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSL--------------------------- 244 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--------------------------- 244 (534)
+|.+.|++++|++.|+++.+.+ +++......++..+........+.+.+..+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999998865 334444444444333322222222211100
Q ss_pred -----------hcc-------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHH
Q 009470 245 -----------KDK-------FEPDVIVYTNLVRGWCR---AGNISEAERVFREMKM-----AGI--------QPNVYTY 290 (534)
Q Consensus 245 -----------~~~-------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~ 290 (534)
... .+.+...+......+.. .|++++|...|+++.+ ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 000 01224455555555554 7889999998888877 311 1234567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD 370 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 370 (534)
..+...+...|++++|...++++.+... +...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 7788888888999999999988887753 37778888888888899999999888888764 45677888888888889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 371 GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLK 450 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 450 (534)
|++++|...++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999888877533 56778888888888899999999888887654 235677888888888889999999888
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 451 KEMEENEV-EPN----VNTYRILITMYCG---MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVE 522 (534)
Q Consensus 451 ~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 522 (534)
+++.+... .++ ...+..+...+.. .|++++|.+.++++++.. +.+...+..+...+.+.|++++|.+.++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88866321 111 3477888888888 899999999998888864 4456778888888888899999999888
Q ss_pred HHHHcC
Q 009470 523 KMVDRG 528 (534)
Q Consensus 523 ~~~~~g 528 (534)
++++.+
T Consensus 474 ~a~~~~ 479 (514)
T 2gw1_A 474 ESADLA 479 (514)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 887754
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.4e-23 Score=209.75 Aligned_cols=362 Identities=11% Similarity=0.080 Sum_probs=282.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...|...|++++|++.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356678888888889999999999999888764 4578888999999999999999999999988765 45677888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDV---IVYTNL------------VRGWCRAGNISEAERVFREMKMAGIQPNVYTY 290 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 290 (534)
..|.+.|++++|.+.|+++....+.+. ..+..+ ...+.+.|++++|...|+++.+.. +.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 899999999999999998887666666 666665 444888999999999999998764 3367888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH-------
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFL------- 363 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l------- 363 (534)
..+..+|.+.|++++|++.++++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 889999999999999999999988764 4578889999999999999999999999998764 3344455444
Q ss_pred -----HHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009470 364 -----IDCHCKDGKLEDAIKVLNSMVRKGCNPN----ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM 434 (534)
Q Consensus 364 -----i~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (534)
...+.+.|++++|...++++.+.... + ...+..+..++.+.|++++|.+.++++.+.. +.+...|..+.
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 78889999999999999999886422 2 3478888899999999999999999988754 34788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhCC-----CHHHHHHHHHHHHHcCCCCCC
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM------------YCGMG-----HWNNAYKYIREMIEEKCLKPG 497 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~~~~~~~~~p~ 497 (534)
.+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+.++++... ..|+
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd 413 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPD 413 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGG
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCC
Confidence 99999999999999999998853 3345666666532 33334 567778888863332 2333
Q ss_pred H-----------HHHHHHHHHHHHcCCHHHH
Q 009470 498 S-----------SVYEMVLQQLRRAGQLQKH 517 (534)
Q Consensus 498 ~-----------~~~~~l~~~~~~~g~~~~a 517 (534)
. ..+..+..+|...|+.++.
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2 2455666666666665443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4e-23 Score=208.16 Aligned_cols=343 Identities=13% Similarity=0.107 Sum_probs=280.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 170 FIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 170 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
.+.++...+ +.+...+..++..+.+.|++++|+++|+++.+.. +.+..++..+..++...|++++|...|+++....+
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 344444333 4567899999999999999999999999998764 55788999999999999999999999999988778
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHH
Q 009470 250 PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV---YTYSIV------------IDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------l~~~~~~g~~~~A~~~~~~m~ 314 (534)
.+..++..++..|.+.|++++|.+.|+++.+.+.. +. ..+..+ ...+.+.|++++|+..++++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999876322 33 455544 445889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009470 315 EVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 394 (534)
+.. +.+...+..+..+|.+.|++++|...|+++.+.. +.+..++..++.+|...|++++|...++++.+.... +...
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 247 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 247 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHH
Confidence 875 4578899999999999999999999999998764 567889999999999999999999999999876432 4444
Q ss_pred HHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 395 FNMI------------FRCISKLGDVNGAHRMYGKMKDLKCEPN-----TVTYNILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 395 ~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
+..+ ...+.+.|++++|.+.|+++.+.. |+ ...|..+...+.+.|++++|...++++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5444 788999999999999999998753 44 4578889999999999999999999998763
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH------------HHHcC-----CHHHHHHH
Q 009470 458 VEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQ------------LRRAG-----QLQKHEEL 520 (534)
Q Consensus 458 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~a~~~ 520 (534)
+.+...|..+..+|...|++++|.+.++++++.. +-+...+..+..+ |...| +.+++.+.
T Consensus 326 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 326 -PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 5578999999999999999999999999999843 2345555555532 22333 55667777
Q ss_pred HHH
Q 009470 521 VEK 523 (534)
Q Consensus 521 ~~~ 523 (534)
+++
T Consensus 403 y~~ 405 (450)
T 2y4t_A 403 YRK 405 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.7e-23 Score=208.84 Aligned_cols=365 Identities=10% Similarity=0.020 Sum_probs=287.9
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 123 RHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEA 202 (534)
Q Consensus 123 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 202 (534)
...+.+.+|+..|+.+.+.. +.+...+..+..++.+.|++++|...|+.+...+ +.+......++..+........+
T Consensus 50 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 126 (514)
T 2gw1_A 50 VSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKL 126 (514)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHH
Confidence 34567899999999988753 4577899999999999999999999999998886 34444444555544443333333
Q ss_pred HHHHHHHHHcC-----------------------------------C---------CCCHHHHHHHHHHHHh---cCCHH
Q 009470 203 VHAFNRMEEYG-----------------------------------C---------APDKIAFSIVISILCR---KRRAS 235 (534)
Q Consensus 203 ~~~~~~m~~~g-----------------------------------~---------~~~~~~~~~ll~~~~~---~g~~~ 235 (534)
.+.+..+...+ . +.+...+......+.. .|+++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
T 2gw1_A 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD 206 (514)
T ss_dssp TTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred HHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH
Confidence 33332111110 0 1113344444444444 89999
Q ss_pred HHHHHHHHhhc-----c--C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 236 EAQSFFDSLKD-----K--F-------EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 236 ~A~~~~~~~~~-----~--~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
+|...|+++.. . . +.+..++..+...+...|++++|...++++.+.+.. ...+..+...+...|
T Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCC
Confidence 99999998766 2 1 335678889999999999999999999999886533 888899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 285 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp CCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998875 4467789999999999999999999999998875 4567889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 009470 382 SMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCE-PN----TVTYNILMQMFAT---SKSTDMVLKLKKEM 453 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~l~~~m 453 (534)
++.+... .+...+..+...+...|++++|.+.++++.+.... ++ ...+..+...+.. .|++++|...++++
T Consensus 363 ~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 9988743 36788999999999999999999999998764311 11 3488899999999 99999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 454 EENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 454 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
.+.. +.+..++..+...+.+.|++++|.+.++++++.. |+..
T Consensus 442 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~ 483 (514)
T 2gw1_A 442 SKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA---RTME 483 (514)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc---cccH
Confidence 8864 5577889999999999999999999999999954 5543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.3e-21 Score=201.82 Aligned_cols=401 Identities=9% Similarity=0.061 Sum_probs=286.6
Q ss_pred HHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 112 VRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVR 191 (534)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 191 (534)
.......+..+...+++.+|+..|+.+.... +.++..+..+..++.+.|++++|.+.++++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4455555655666778889999999998753 4578899999999999999999999999998876 567889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-------CCCCHH-----------
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK-------FEPDVI----------- 253 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~----------- 253 (534)
.+...|++++|++.|+.+.. .|+.. ...+..+...+...+|...++.+... ..|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999964422 23221 12233444455556677777665432 111111
Q ss_pred -------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHH
Q 009470 254 -------------------VYTNLVRGWC--------RAGNISEAERVFREMKMAGIQPN-------VYTYSIVIDALCR 299 (534)
Q Consensus 254 -------------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~ 299 (534)
....+...+. ..|++++|..+++++.+.... + ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHh
Confidence 1222222211 124788888888888765322 2 2346666677788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHH
Q 009470 300 CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKV 379 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (534)
.|++++|.+.++++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888888876 3457778888888888888888888888887765 45677888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-- 457 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-- 457 (534)
++++.+.... +...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 8888876532 56778888888888888888888888887764 3356778888888888888888888888876532
Q ss_pred ---CCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 458 ---VEPNVNTYRILITMYCGM----------GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 458 ---~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
.......+......+.+. |++++|+..++++++.. +.+...+..+...+.+.|++++|.+.++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111223344455666666 88888888888888864 455677888888888888888888888888
Q ss_pred HHcC
Q 009470 525 VDRG 528 (534)
Q Consensus 525 ~~~g 528 (534)
++..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7754
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=6.4e-20 Score=178.32 Aligned_cols=328 Identities=12% Similarity=0.050 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
+.+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344445555555555555555555554443 2344455555555555555555555555554432 22344444555555
Q ss_pred HhcCCHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFE---PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
...|++++|...|+++....+ .+...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 555555555555555444333 23333333211000 0011122456667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777776654 3456666677777777777777777777776654 44566777777777777777777777777766
Q ss_pred CCCCCCHHHHH------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 009470 386 KGCNPNASTFN------------MIFRCISKLGDVNGAHRMYGKMKDLKCEPNT----VTYNILMQMFATSKSTDMVLKL 449 (534)
Q Consensus 386 ~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l 449 (534)
.... +...+. .+...+.+.|++++|.+.++++.+.... +. ..+..+...+...|++++|...
T Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5322 222222 3366688899999999999988775422 33 2345577888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH
Q 009470 450 KKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLR 509 (534)
Q Consensus 450 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 509 (534)
+++..+.. +.+..++..+...+...|++++|.+.++++++. .|+ ...+..+..+..
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH---NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Confidence 99988863 457888889999999999999999999999885 344 455555554443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.6e-20 Score=193.44 Aligned_cols=372 Identities=12% Similarity=0.076 Sum_probs=282.9
Q ss_pred ChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 009470 108 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS 187 (534)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 187 (534)
.|............+...+++.+|+..|+.+.... +.+...+..+..++.+.|++++|...|+.+ .... ....
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~----~~~~ 127 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNG----DFDG 127 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCC----CCCh
Confidence 34333333333333444567999999999998753 457889999999999999999999999744 2221 1223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHH------------------------------HHHHHHHH--
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEY------GCAPDKIAF------------------------------SIVISILC-- 229 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~------------------------------~~ll~~~~-- 229 (534)
..+..+...+...+|++.++++... ...|+.... ..+...+.
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207 (537)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence 3345566666778888888887542 112222221 11111111
Q ss_pred ------hcCCHHHHHHHHHHhhccCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 230 ------RKRRASEAQSFFDSLKDKFEPDVI-------VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296 (534)
Q Consensus 230 ------~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (534)
..|++++|..+++++....+.+.. ++..+...+...|++++|...++++.+. .|+...+..+...
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 124788999999998876666644 5677778889999999999999999886 4557888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDA 376 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 376 (534)
+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998875 4478889999999999999999999999998875 45678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------C
Q 009470 377 IKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLK-----CEPNTVTYNILMQMFATS----------K 441 (534)
Q Consensus 377 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g 441 (534)
...++++.+... .+...+..+...+...|++++|.+.++++.+.. .......+..+...+... |
T Consensus 364 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 999999998753 367789999999999999999999999987532 111223344556677777 9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++++..
T Consensus 443 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 443 KFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999998864 5577889999999999999999999999999964
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.8e-19 Score=175.19 Aligned_cols=325 Identities=14% Similarity=0.069 Sum_probs=199.3
Q ss_pred HHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 114 HVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRY 193 (534)
Q Consensus 114 ~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 193 (534)
..+.....+...+++.+|+..|+.+.... +.++..+..+...+...|++++|...++++.+.+ +.+...|..+...+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 34444445556678999999999998743 4578899999999999999999999999998875 45778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 194 VRAGLAAEAVHAFNRMEEYGCAP----DKIAFSIV------------ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
...|++++|++.|+++.+.. | +...+..+ ...+...|++++|.+.++++....+.+..++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 99999999999999998753 5 33444433 244455555555555555555444445555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 258 LVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~------ 231 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------ 231 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH------
Confidence 5555555555555555555555432 2234455555555555555555555555554432 1122221111000
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHH
Q 009470 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA----STFNMIFRCISKLGDVNGAHR 413 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 413 (534)
. .......+...+.+.|++++|...++++.+.... +. ..+..+..++.+.|++++|.+
T Consensus 232 -----------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 232 -----------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -----------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 0 0001112244566667777777777666665322 22 223345566667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 414 MYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 414 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
.+++..+.. +.+..++..+...+...|++++|...++++.+.. +-+...+..+..+
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 777766543 2356666677777777777777777777776642 2234444444433
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.8e-19 Score=173.13 Aligned_cols=291 Identities=9% Similarity=-0.005 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 217 DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296 (534)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (534)
+...+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++.+... .+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence 3344444555555555555555555555544444455555555555555555555555555554321 134455555555
Q ss_pred HHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHH
Q 009470 297 LCRCG-QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLED 375 (534)
Q Consensus 297 ~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 375 (534)
+...| ++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 55555 5566666665555543 2234455555666666666666666666655543 2334455556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 376 AIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLK--------CEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 376 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
|...++++.+... .+...+..+...+...|++++|...++++.+.. ...+..++..+...+...|++++|.
T Consensus 178 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666665532 245666666666666666666666666665421 1223466777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-HHcCCH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL-RRAGQL 514 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 514 (534)
..+++..+.. +.+...+..+...+.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCch
Confidence 7777777653 3456677777777777888888888887777643 33555666666666 344554
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=9.1e-17 Score=163.53 Aligned_cols=352 Identities=11% Similarity=0.021 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH
Q 009470 147 SPDLYHEMINLAGK----VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR----AGLAAEAVHAFNRMEEYGCAPDK 218 (534)
Q Consensus 147 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~ 218 (534)
++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|+++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555443 23455555555555 555555555555555433 34
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009470 219 IAFSIVISILCR----KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR----AGNISEAERVFREMKMAGIQPNVYTY 290 (534)
Q Consensus 219 ~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 290 (534)
..+..+...|.. .++.++|.+.|++..+. .+...+..|...|.. .+++++|+++|++..+.| +...+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 444445555554 45555555555554332 244455555555554 455555555555555543 34445
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHH
Q 009470 291 SIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK----ASRTEKVLQVYNQMKRLGCEADTITYNF 362 (534)
Q Consensus 291 ~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 362 (534)
..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555554 555555555555555543 33444445544444 455555555555555432 2334444
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009470 363 LIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL-----GDVNGAHRMYGKMKDLKCEPNTVTYNIL 433 (534)
Q Consensus 363 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l 433 (534)
+...|.. .++.++|...|++..+.| +...+..+...+... ++.++|.+.|++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 4444444 555555555555555443 334444445554444 55555555555555543 33444445
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 434 MQMFATSK---STDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 434 i~~~~~~g---~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
...|...| +.++|.+++++..+.| +...+..+...|.. .+++++|+++|++..+.+ +...+..+..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~ 407 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHH
Confidence 54444433 4555555555555543 34445555555555 455555555555555532 2344455555
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcC
Q 009470 507 QLRR----AGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 507 ~~~~----~g~~~~a~~~~~~~~~~g 528 (534)
.|.. .++.++|.+.+++..+.|
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5554 455555555555555544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.4e-19 Score=171.16 Aligned_cols=288 Identities=10% Similarity=0.018 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++++....+.+...|..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 445555555666666666666666655443 2333444455555566666666666666655555555566666666666
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009470 264 RAG-NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVL 342 (534)
Q Consensus 264 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (534)
..| ++++|.+.|+++.+... .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 666 66666666666655432 134555566666666666666666666665553 223444555666666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG--------CNPNASTFNMIFRCISKLGDVNGAHRM 414 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 414 (534)
..++++.+.. +.+...+..+...+...|++++|...++++.+.. ......++..+..++...|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666665543 3445566666666666666666666666665431 022345666666666777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCC
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY-CGMGH 477 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~ 477 (534)
++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 77666543 2255666666667777777777777777666542 33555555565555 34444
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=4e-19 Score=173.68 Aligned_cols=290 Identities=11% Similarity=0.044 Sum_probs=200.7
Q ss_pred cCCHHHHHH-HHHHhhccCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 231 KRRASEAQS-FFDSLKDKFEP----DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 231 ~g~~~~A~~-~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
.|++++|.+ .+++.....+. +...+..+...+.+.|++++|...|+++.+... .+...+..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 55544322111 234566666666677777777777777666532 245566666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH---------------HHHHHHHc
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF---------------LIDCHCKD 370 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~---------------li~~~~~~ 370 (534)
|++.++++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777666654 3356666666667777777777777777666553 222222211 23334488
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 371 GKLEDAIKVLNSMVRKGCNP-NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKL 449 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 449 (534)
|++++|...++++.+..... +..++..+...+...|++++|.+.++++.+.. +.+..+|..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998874322 57888889999999999999999999988764 33678889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 450 KKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLK---------PGSSVYEMVLQQLRRAGQLQKHEEL 520 (534)
Q Consensus 450 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------p~~~~~~~l~~~~~~~g~~~~a~~~ 520 (534)
++++.+.. +.+...+..+...|.+.|++++|.+.++++++..+-. .....|..+..++...|+.++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99988763 5567888999999999999999999999988753100 0157889999999999999999988
Q ss_pred HHHHH
Q 009470 521 VEKMV 525 (534)
Q Consensus 521 ~~~~~ 525 (534)
+++.+
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 77543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=3.8e-16 Score=158.95 Aligned_cols=338 Identities=15% Similarity=0.100 Sum_probs=292.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGK----VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR----A 196 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 196 (534)
.+++.+|+..|..+.+. .++..+..+..+|.. .+++++|.+.|++..+.+ +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 45788999999999875 267888999999998 899999999999998876 45788889999988 8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh----cCCH
Q 009470 197 GLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR----KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR----AGNI 268 (534)
Q Consensus 197 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 268 (534)
+++++|+++|++..+.| +...+..+...|.. .++.++|.+.|++..+. .+...+..+...|.. .++.
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 99999999999998875 67788888888887 78999999999997664 478899999999998 8999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhH
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK----ASRTEK 340 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~ 340 (534)
++|.++|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999998875 56778888888886 889999999999998865 56677778888887 899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHH
Q 009470 341 VLQVYNQMKRLGCEADTITYNFLIDCHCKD-----GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG---DVNGAH 412 (534)
Q Consensus 341 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 412 (534)
|..+|++..+.| +...+..+...|... +++++|...+++..+.| +...+..+...+...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 566777888888887 89999999999999875 5667788888887766 789999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHH
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKY 484 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 484 (534)
++|++..+.+ +...+..+...|.. .+++++|..++++..+.| +...+..+...|.. .+++++|.++
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999864 67888899999988 899999999999999876 57788888888888 8999999999
Q ss_pred HHHHHHcC
Q 009470 485 IREMIEEK 492 (534)
Q Consensus 485 ~~~~~~~~ 492 (534)
|+++.+.+
T Consensus 426 ~~~A~~~~ 433 (490)
T 2xm6_A 426 FDTASTND 433 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 99999865
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.3e-19 Score=175.35 Aligned_cols=268 Identities=8% Similarity=-0.005 Sum_probs=204.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMR 330 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 330 (534)
+...+..+...+.+.|++++|...|+++.+... .+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445577777788888888888888888776532 356777778888888888888888888877764 345777778888
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 009470 331 VHVKASRTEKVLQVYNQMKRLGCEAD----------TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-PNASTFNMIF 399 (534)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~g~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~ 399 (534)
+|...|++++|...++++.+.. +.+ ...+..+...+...|++++|...++++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 8888888888888888877653 111 223344578888999999999999999887532 2678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
..+...|++++|.+.++++.+.. +.+..+|..+...|...|++++|...++++.+.. +.+..++..+...|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998765 3478899999999999999999999999998863 456888999999999999999
Q ss_pred HHHHHHHHHHHcCCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 480 NAYKYIREMIEEKCLK----------PGSSVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 480 ~A~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
+|.+.++++++...-. .+...|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998743110 0257789999999999999999887765
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=4.8e-19 Score=173.15 Aligned_cols=288 Identities=9% Similarity=-0.018 Sum_probs=186.3
Q ss_pred cCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 196 AGLAAEAVH-AFNRMEEYGC-AP--DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 196 ~g~~~~A~~-~~~~m~~~g~-~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.|++++|++ .|++..+... .| +...+..+...+.+.|++++|...|+++....+.+..+|..+...+.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 5554432211 01 2234455555566666666666666665555555556666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHHcC
Q 009470 272 ERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNN---------------LMRVHVKAS 336 (534)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g 336 (534)
...|+++.+... .+..++..+...|...|++++|.+.++++.+.... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 666666655432 24555566666666666666666666666554311 1111110 233334788
Q ss_pred ChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEA--DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRM 414 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 414 (534)
++++|...++++.+.. +. +..++..+...|.+.|++++|...++++.+... .+...+..+...+...|++++|.+.
T Consensus 196 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888887764 22 477888888888888899999888888887642 3577888888888889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhCCCHHHHHH
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-----------VNTYRILITMYCGMGHWNNAYK 483 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~ 483 (534)
++++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+ ..+|..+..+|...|++++|..
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 98887754 3467788888888999999999999988887642 112 6788889999999999999988
Q ss_pred HHHHHH
Q 009470 484 YIREMI 489 (534)
Q Consensus 484 ~~~~~~ 489 (534)
++++.+
T Consensus 352 ~~~~~l 357 (368)
T 1fch_A 352 ADARDL 357 (368)
T ss_dssp HHTTCH
T ss_pred hHHHHH
Confidence 876443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=4.3e-16 Score=160.20 Aligned_cols=406 Identities=11% Similarity=0.103 Sum_probs=297.2
Q ss_pred ChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 009470 108 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS 187 (534)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 187 (534)
+......++.. ...+++.+|..+|+.+... ++.+...|...+..+.+.|+++.|..+|+++.... |+...|.
T Consensus 12 ~~~~w~~l~~~----~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~ 83 (530)
T 2ooe_A 12 DLDAWSILIRE----AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWK 83 (530)
T ss_dssp CHHHHHHHHHH----HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHH
T ss_pred CHHHHHHHHHH----HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHH
Confidence 34444444542 2346799999999999874 46688899999999999999999999999998875 4778888
Q ss_pred HHHHHH-HHcCCHHHHHH----HHHHHHH-cCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHhhccCCCC
Q 009470 188 ILVRRY-VRAGLAAEAVH----AFNRMEE-YGCAP-DKIAFSIVISILCR---------KRRASEAQSFFDSLKDKFEPD 251 (534)
Q Consensus 188 ~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 251 (534)
..+... ...|+.++|.+ +|++..+ .|..| +...|...+....+ .|++++|..+|++... .+.+
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~ 162 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI 162 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh
Confidence 877533 45677777665 7777654 35444 46677777776654 6889999999999877 3322
Q ss_pred --HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHH
Q 009470 252 --VIVYTNLVRGWC-------------RAGNISEAERVFREMK------MAG---IQPN--------VYTYSIVIDALCR 299 (534)
Q Consensus 252 --~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~ll~~~~~ 299 (534)
...|........ +.+++.+|..++.++. +.. +.|+ ...|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 244444333221 2345677777776632 111 2333 2455555443222
Q ss_pred c----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCChh-------HHHHHHHHHHHcCCCCCh
Q 009470 300 C----GQI----TRAHDVFAEMLEVGCEPNSITFNNLMRVHVK-------ASRTE-------KVLQVYNQMKRLGCEADT 357 (534)
Q Consensus 300 ~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~g~~~~~ 357 (534)
. ++. +++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 2 232 47788999888763 4478888888888776 69987 899999999863234568
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQ 435 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 435 (534)
..|..++..+.+.|++++|..+|+++.+.. |+ ...|...+..+.+.|++++|.++|++..+... .+...|...+.
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHH
Confidence 889999999999999999999999999863 43 35888889989999999999999999987532 23333433322
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcC
Q 009470 436 M-FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG--SSVYEMVLQQLRRAG 512 (534)
Q Consensus 436 ~-~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 512 (534)
. +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++++......|+ ...|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999988753 446889999999999999999999999999997544443 457888888889999
Q ss_pred CHHHHHHHHHHHHHc
Q 009470 513 QLQKHEELVEKMVDR 527 (534)
Q Consensus 513 ~~~~a~~~~~~~~~~ 527 (534)
+.+.+..+..++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=9.2e-18 Score=163.98 Aligned_cols=264 Identities=7% Similarity=-0.008 Sum_probs=121.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|++.|++.....+.+..+|..++..|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 3444444444444444444444444332 223344444444444444444444444444433333444444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHc
Q 009470 266 GNISEAERVFREMKMAGIQ---------PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCE-PNSITFNNLMRVHVKA 335 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~---------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~ 335 (534)
|++++|...++++.+.... .....+..+...+.+.|++++|.+.++++.+.... .+...+..+...+.+.
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 4444444444444432100 00111223344555555555555555555544311 1345555555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
|++++|...++++.+.. +.+..+|..+..+|...|++++|...++++.+... .+..++..+..++.+.|++++|.+.|
T Consensus 227 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555555443 33445555555555555555555555555555421 13455555555555556666666555
Q ss_pred HHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 416 GKMKDLKC-----------EPNTVTYNILMQMFATSKSTDMVLKLKKE 452 (534)
Q Consensus 416 ~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 452 (534)
+++.+... ..+...|..+..++...|+.+.+.++.++
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 55543210 01245566666666666666666655443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2.3e-17 Score=158.03 Aligned_cols=275 Identities=9% Similarity=-0.005 Sum_probs=137.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...+...|++++|++.++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34555666667777777777777766654 3456667777777777777777777777766543 335566666666666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIV-ID-ALCRCGQITRAH 307 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~-~~~~~g~~~~A~ 307 (534)
..|++++|.+.++++....+.+...+..+.... |+......+ .. .+...|++++|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 777777777777666554333333333330000 000000001 11 133444444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 387 (534)
+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444432 2234444444444444555555555444444432 2234444445555555555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 388 CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP-----------NTVTYNILMQMFATSKSTDMVLKLKK 451 (534)
Q Consensus 388 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~l~~ 451 (534)
. .+...+..+..++...|++++|.+.++++.+..... +...|..+..++...|++++|..+++
T Consensus 237 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 237 P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred C-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1 134444555555555555555555555544322110 24445555555555555555555544
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=4.9e-17 Score=155.78 Aligned_cols=280 Identities=11% Similarity=0.010 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..+...+...|++++|+++|+++.+.. +.+..++..+...+...|++++|.+.++++....+.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345566667777777777777777776643 3455666667777777777777777777766655666667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCChhHH
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMR--VHVKASRTEKV 341 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a 341 (534)
..|++++|.+.++++.+.... +...+..+... .++......+.. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 777777777777776654221 11111111000 011111112212 37788999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999998875 55788999999999999999999999999998753 36788999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 422 KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP-----------NVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
. +.+..++..+...+...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++.++
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5 3468889999999999999999999999988753111 467899999999999999999999876544
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.2e-16 Score=150.39 Aligned_cols=250 Identities=10% Similarity=0.060 Sum_probs=142.0
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPD-VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
....|++..|+..++.+....+.+ ......+.++|...|++++|+..++. .-.|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344555555555555543321111 12334455566666666665554432 1234455555555566666666666
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 307 HDVFAEMLEVGCEP-NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 307 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666665554323 344444445556666666666666654 34455666666666666666666666666665
Q ss_pred CCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 386 KGCNPNASTF---NMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV 462 (534)
Q Consensus 386 ~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 462 (534)
.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 53 332111 112233334467777777777776653 3466677777777777777777777777766653 4456
Q ss_pred HHHHHHHHHHHhCCCHHH-HHHHHHHHHHc
Q 009470 463 NTYRILITMYCGMGHWNN-AYKYIREMIEE 491 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~-A~~~~~~~~~~ 491 (534)
.++..++..+...|+.++ +.++++++++.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 667777777777777655 45677777763
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=9.3e-16 Score=155.22 Aligned_cols=366 Identities=9% Similarity=-0.003 Sum_probs=254.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSR--------NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY-----G 213 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 213 (534)
....||.+..++...|++++|++.|++..+. ..+....+|+.+...|...|++++|+..+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568999999999999999999999876542 12335678999999999999999999999887542 1
Q ss_pred -C-CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 214 -C-APDKIAFSIVISILCR--KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW---CRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 214 -~-~~~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
. .....++.....++.. .+++++|++.|++.....|.+...+..+...+ ...++.++|++.+++..+... .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 0 1234566666555555 45789999999998877677777777766654 456778889999998877542 24
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 009470 287 VYTYSIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF 362 (534)
Q Consensus 287 ~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 362 (534)
...+..+...+.. .|++++|.+.+++..... +.+...+..+...|.+.|++++|...+++..+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 5566655555544 467889999999988775 4577888999999999999999999999998874 445667777
Q ss_pred HHHHHHHc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009470 363 LIDCHCKD-------------------GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC 423 (534)
Q Consensus 363 li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 423 (534)
+..+|... +.+++|...+++..+... .+...+..+...+...|++++|.+.|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 76665432 235677788887777643 3556788889999999999999999999987653
Q ss_pred CCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHH
Q 009470 424 EPNTV--TYNILMQ-MFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSV 500 (534)
Q Consensus 424 ~p~~~--~~~~li~-~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 500 (534)
.+... .+..+.. .+...|+.++|+..+++..+. .|+...... ..+.+.+++++.++.. +.+..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~--p~~~~~ 432 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN--GADSEA 432 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC--C-CTTH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC--CCCHHH
Confidence 32221 2223322 234678999999999998874 444332222 2344556667777754 456778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 501 YEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 501 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
|..+..++...|++++|.+.+++.++.|-
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998763
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=2.9e-16 Score=147.80 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHH
Q 009470 371 GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM-VLKL 449 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~l 449 (534)
|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.++++.+.. +-+..++..++..+...|+.++ +.++
T Consensus 180 ~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp THHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44444444444444432 2233444444444444444444444444443332 1133344444444444444432 2344
Q ss_pred HHHHHH
Q 009470 450 KKEMEE 455 (534)
Q Consensus 450 ~~~m~~ 455 (534)
++++.+
T Consensus 258 ~~~~~~ 263 (291)
T 3mkr_A 258 LSQLKD 263 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.6e-17 Score=158.71 Aligned_cols=278 Identities=12% Similarity=0.110 Sum_probs=134.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF 206 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 206 (534)
.+++|..|++.+. .+.+|..++.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+..+
T Consensus 18 ~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 18 NLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4678899988762 3469999999999999999999999753 45679999999999999999999988
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 207 NRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 207 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
+..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 777663 4567889999999999999999988875 367789999999999999999999999977
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 287 VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 287 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|+..|+++.|...... +...+.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence 37899999999999999999999988 2789999999999999999999665543 23344446678999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL--GDVNGAHRMYGKMKDLKCEP------NTVTYNILMQMFA 438 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~~~ 438 (534)
|.+.|++++|..+++...... +.....|+.+..+|++- +++.+.+++|..- .++++ +...|.-+.-.|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998775 55678888887777764 3444455544321 12222 4556888899999
Q ss_pred hcCCHHHHHH
Q 009470 439 TSKSTDMVLK 448 (534)
Q Consensus 439 ~~g~~~~a~~ 448 (534)
..++++.|..
T Consensus 294 ~~~e~d~A~~ 303 (449)
T 1b89_A 294 KYEEYDNAII 303 (449)
T ss_dssp HTTCHHHHHH
T ss_pred hhchHHHHHH
Confidence 9999998876
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=180.55 Aligned_cols=115 Identities=10% Similarity=0.126 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKM---AGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNL 328 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 328 (534)
..+||+||.+||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 245555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 329 MRVHVKASRT-EKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 329 i~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 5555555542 4455555555555555555555555443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=6.1e-18 Score=163.14 Aligned_cols=284 Identities=13% Similarity=0.160 Sum_probs=136.2
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 238 (534)
-+.|++++|.++++++.. ..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 477889999999999833 259999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC 318 (534)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 318 (534)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 988877664 4567889999999999999999998885 367789999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMI 398 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 398 (534)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|+..|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36899999999999999999999988 378999999999999999999966555422 344445678
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHH
Q 009470 399 FRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEE-NEVEP------NVNTYRILITM 471 (534)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p------~~~~~~~li~~ 471 (534)
+..|.+.|.+++|..+++...... +-....|+-|..+|++- +.++..+.++.... .++++ +...|.-++..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998765 55778888888888875 33333333332222 12222 45568889999
Q ss_pred HHhCCCHHHHHHH
Q 009470 472 YCGMGHWNNAYKY 484 (534)
Q Consensus 472 ~~~~g~~~~A~~~ 484 (534)
|.+.++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999998763
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.6e-14 Score=148.51 Aligned_cols=374 Identities=11% Similarity=0.075 Sum_probs=278.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
+.+...|..++.. .+.|+++.|..+|+++.+.. |.+...|...+..+.+.|++++|.++|+++.+.. |+...|...
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 4578899999984 78899999999999999875 6688999999999999999999999999998753 687777777
Q ss_pred HHHH-HhcCCHHHHHH----HHHHhhcc---CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCH
Q 009470 225 ISIL-CRKRRASEAQS----FFDSLKDK---FEPDVIVYTNLVRGWCR---------AGNISEAERVFREMKMAGIQPNV 287 (534)
Q Consensus 225 l~~~-~~~g~~~~A~~----~~~~~~~~---~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 287 (534)
+... ...|+.+.|.+ +|++.... .+.+...|...+....+ .|++++|.++|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34677776665 66665432 23467888888887665 78999999999999873111112
Q ss_pred HHHHHHHHHHH-------------HcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHHc--
Q 009470 288 YTYSIVIDALC-------------RCGQITRAHDVFAEML------EVG---CEPN--------SITFNNLMRVHVKA-- 335 (534)
Q Consensus 288 ~~~~~ll~~~~-------------~~g~~~~A~~~~~~m~------~~~---~~~~--------~~~~~~li~~~~~~-- 335 (534)
..|........ +.+++++|..++.++. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 34443333211 2345677777776532 111 2333 24555555433322
Q ss_pred --CCh----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHH
Q 009470 336 --SRT----EKVLQVYNQMKRLGCEADTITYNFLIDCHCK-------DGKLE-------DAIKVLNSMVRKGCNPNASTF 395 (534)
Q Consensus 336 --g~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~~~~~ 395 (534)
++. +++..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+-+...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 37788999888763 5578888888888876 79987 999999999873223368889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLKCEPN-T-VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM-Y 472 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~-~ 472 (534)
..++..+.+.|++++|..+|+++.+.. |+ . ..|..++..+.+.|++++|.+++++..+.. +.+...|...+.. +
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 999999999999999999999999853 43 3 589999999999999999999999998863 2233334333322 3
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
...|++++|.++|+++++.. +.+...|..++..+.+.|+.++|..+++++++.+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 46899999999999999864 3467889999999999999999999999999874
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=6.8e-14 Score=150.10 Aligned_cols=290 Identities=12% Similarity=0.155 Sum_probs=166.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (534)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++. +..+|..+..++.+.|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCH
Confidence 3455677788888888887752 11222222222 5666777777777653 466777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
++|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 7777777553 256666677777777777777777776655543 22222233666666666666433221
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------
Q 009470 349 KRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL------- 421 (534)
Q Consensus 349 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------- 421 (534)
+ .++...|..+...|...|++++|..+|..+ ..|..+..++++.|++++|.+.+++....
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 1257 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence 1 234455555666666666666666666663 25666666666666666666666554210
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--CCHHHHH
Q 009470 422 -----------------KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGM--GHWNNAY 482 (534)
Q Consensus 422 -----------------~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~ 482 (534)
++..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.
T Consensus 1258 ~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 011233444555666666666666666665555432 22333444444444432 3333444
Q ss_pred HHHHHHHHcCCCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 009470 483 KYIREMIEEKCLKP------GSSVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 483 ~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 519 (534)
++|..-+. +++ +...|..++..|.+.|+++.|..
T Consensus 1337 k~f~~rin---i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1337 ELFWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcc---cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44432222 222 34557777777788888887774
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=8.2e-14 Score=149.45 Aligned_cols=338 Identities=11% Similarity=0.134 Sum_probs=259.3
Q ss_pred HHHHHHHHhC-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 132 LSFFNWVTAR-PEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNV--EITVDTFSILVRRYVRAGLAAEAVHAFNR 208 (534)
Q Consensus 132 l~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (534)
..+.+|+... -.-..+|+-....+..|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +..+..++.++
T Consensus 968 R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k 1046 (1630)
T 1xi4_A 968 RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH
Confidence 3566775541 12356788889999999999999999999999984432 13456677788888777 66777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009470 209 MEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVY 288 (534)
Q Consensus 209 m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 288 (534)
+... + ...+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..
T Consensus 1047 Ld~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aervn------~p~ 1106 (1630)
T 1xi4_A 1047 LDNY----D---APDIANIAISNELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPA 1106 (1630)
T ss_pred hhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHH
Confidence 6532 1 33467788899999999999999642 2233333333 7789999999988663 577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC 368 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 368 (534)
+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 8999999999999999999999664 377889999999999999999999999887764 44444456999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 369 KDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLK 448 (534)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 448 (534)
+.+++++....+ + .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+
T Consensus 1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 999988644443 2 346677888999999999999999999985 379999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 449 LKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 449 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
.+++. .+..+|..+..+|...|++..|....... ..+...+..++..|.+.|.+++|..+++..+.
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99876 25577777777777788877777755432 23455566777777888888888887776643
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=177.27 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLE---VGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF 362 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 362 (534)
-..||+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 009470 363 LIDCHCKDGKL-EDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN------TVTYNILMQ 435 (534)
Q Consensus 363 li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~ 435 (534)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ .-+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998766543 444444444 2333443 334445555
Q ss_pred HHHhcC
Q 009470 436 MFATSK 441 (534)
Q Consensus 436 ~~~~~g 441 (534)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555444
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=6.7e-15 Score=148.89 Aligned_cols=361 Identities=10% Similarity=-0.022 Sum_probs=244.1
Q ss_pred CCChHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-----C--CCCCHHHHHHHH
Q 009470 125 GIPLLQVLSFFNWVTAR-------PEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR-----N--VEITVDTFSILV 190 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~~~~~~~~~li 190 (534)
.++.++|+..|+.+.+. ...+....+|+.+..+|...|++++|...+++..+. + ......++..+.
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 45788999999887541 112334568999999999999999999999877542 1 112456777777
Q ss_pred HHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 191 RRYVRA--GLAAEAVHAFNRMEEYGCAPDKIAFSIVISI---LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 191 ~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
.++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++.....+.+..++..+...+...
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 666654 46999999999998764 3345555554444 44567888899999988776777888888777666554
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc------
Q 009470 266 ----GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA------ 335 (534)
Q Consensus 266 ----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 335 (534)
|++++|.+.+++...... .+...+..+...|...|++++|.+.+++..+.. +-+..++..+..+|...
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~ 300 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN 300 (472)
T ss_dssp C------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh
Confidence 678899999999887643 367788899999999999999999999998875 33566676666555332
Q ss_pred -------------CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH
Q 009470 336 -------------SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS--TFNMIFR 400 (534)
Q Consensus 336 -------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~ 400 (534)
+..+.|...+++..+.. +.+...+..+...|...|++++|...|++..+....+... .+..+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 301 LRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 23567888888877765 5567788899999999999999999999999875433221 2233332
Q ss_pred -HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 401 -CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 401 -~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
.....|+.++|+..|++..+.. |+..... +..+.+.++++...+.. +.+..+|..+...|...|+++
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~ 447 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQ 447 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2457899999999999998764 4433222 22234455566655543 567789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHH
Q 009470 480 NAYKYIREMIEEKCLKPGSSVY 501 (534)
Q Consensus 480 ~A~~~~~~~~~~~~~~p~~~~~ 501 (534)
+|++.|+++++.+...|+...|
T Consensus 448 ~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 448 QADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999977555655443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=7.3e-15 Score=135.38 Aligned_cols=223 Identities=12% Similarity=0.070 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---C----HHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEP---D----VIVYT 256 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~----~~~~~ 256 (534)
..|..+...+...|++++|++.|++..+.. .+..++..+...+...|++++|.+.+++.....+. + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555666666666666666666665544 45555666666666666666666666654432111 1 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
.+...+.+.|++++|...|+++.+.. |+. ..+.+.|++++|.+.++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666532 231 23445556666666666665542 223445555555566666
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG 416 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 416 (534)
++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+..++.+.|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666655543 33455555555556666666666666665555431 234555555555555555555555555
Q ss_pred HHHh
Q 009470 417 KMKD 420 (534)
Q Consensus 417 ~m~~ 420 (534)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-14 Score=134.02 Aligned_cols=226 Identities=14% Similarity=0.057 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCE--PN----SITF 325 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~----~~~~ 325 (534)
...|..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|++.+++..+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776655 46666777777777777777777777776654211 11 4566
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009470 326 NNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 405 (534)
..+...+...|++++|...++++.+.. ++. ..+...|++++|...++++..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 677777777777777777777776643 332 345566777777777777776532 2455677777777788
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
|++++|.+.++++.+.. +.+..+|..+...+...|++++|...++++.+.. +.+...|..+...+.+.|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888777654 2356777777888888888888888888877753 445677777888888888888888888
Q ss_pred HHHHHc
Q 009470 486 REMIEE 491 (534)
Q Consensus 486 ~~~~~~ 491 (534)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887763
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.5e-14 Score=129.94 Aligned_cols=80 Identities=14% Similarity=-0.008 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++.....|.+...+..+...+.+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33334444444444444444444443322 22233333344444444444444444444333333333444444444433
Q ss_pred c
Q 009470 265 A 265 (534)
Q Consensus 265 ~ 265 (534)
.
T Consensus 86 ~ 86 (217)
T 2pl2_A 86 L 86 (217)
T ss_dssp H
T ss_pred h
Confidence 3
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.5e-14 Score=129.96 Aligned_cols=200 Identities=10% Similarity=0.017 Sum_probs=148.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
+.++..+..+...+.+.|++++|...|++..+.+ +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3466788899999999999999999999999886 5688999999999999999999999999998865 4567788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 225 ISILCRK-----------RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIV 293 (534)
Q Consensus 225 l~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 293 (534)
...+... |++++|+..|++..+..|.+...|..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 8888888 888888888877776666677777777778888888888888887777765 466777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 294 IDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
...|...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777777664 3356666777777777777777777776554
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=8.2e-13 Score=123.07 Aligned_cols=224 Identities=14% Similarity=0.052 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
+..++..+...+...|++++|++.|++..+. -+...+..+...|.. .|++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566666777777777777777777777663 244566666677777 777777777777777664 566666
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 327 NLMRVHVK----ASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMI 398 (534)
Q Consensus 327 ~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 398 (534)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777654 56667777777777 777777777777777764 45566666
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 399 FRCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 399 ~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 677766 777888888887777653 45666777777777 778888888888777764 2566667777
Q ss_pred HHHh----CCCHHHHHHHHHHHHHcC
Q 009470 471 MYCG----MGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 471 ~~~~----~g~~~~A~~~~~~~~~~~ 492 (534)
.|.+ .+++++|++++++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 778888888888877754
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=2.6e-14 Score=143.43 Aligned_cols=368 Identities=11% Similarity=0.029 Sum_probs=226.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQF---DLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG---- 197 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---- 197 (534)
.+++.+|+..|..+.+. + ++..+..+..++...|+. ++|..+|++..+. +...+..+...+...|
T Consensus 16 ~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 34577888888887754 2 344566666777777777 8888888877654 3456666666555554
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH--
Q 009470 198 -LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASE---AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA-- 271 (534)
Q Consensus 198 -~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-- 271 (534)
++++|+++|++..+.|. + ..+..+...|...+..++ +.+.+...... .+...+..|...|...+.++++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred cCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcccCHH
Confidence 67888888888887663 2 255666666666554443 33334333321 2455677777778777754444
Q ss_pred --HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CChhHHH
Q 009470 272 --ERVFREMKMAGIQPNVYTYSIVIDALCRCG---QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA----SRTEKVL 342 (534)
Q Consensus 272 --~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~ 342 (534)
..+++.... .+...+..+...|.+.| +.++|++.|++..+.| .++...+..+...|... ++.++|.
T Consensus 163 ~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 163 DVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444443332 23337777888888888 8888999998888887 55666556666666554 6888899
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHH
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDC-H--CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG-----DVNGAHRM 414 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~ 414 (534)
++|++.. . -+...+..|... + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|.++
T Consensus 238 ~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9888887 3 355666666666 3 46788999999999888876 6677777777776 45 88889998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIR 486 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 486 (534)
|++.. .| +...+..|...|.. ..++++|..++++..+.|. ......|...|.. ..++++|..+|+
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 88877 33 66777777777766 3488889999988888763 3344455555553 458889999998
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 487 EMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 487 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
...+.| .++.......+......++.++|.++.++..+.
T Consensus 383 ~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 383 LAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 888865 233322222222223345667777777766553
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=8.3e-13 Score=123.05 Aligned_cols=225 Identities=12% Similarity=0.026 Sum_probs=200.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK----ASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
+...+..+...|...|++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56678888899999999999999999999843 56788889999999 999999999999999876 788899
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009470 362 FLIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNIL 433 (534)
Q Consensus 362 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 433 (534)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 77889999999999 999999999999999875 67788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 434 MQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 434 i~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++++++..+.+ + ...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~-~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N-GGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C-HHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C-HHHHHHHH
Confidence 888888 899999999999999875 56788888889999 999999999999999864 3 66788888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCC
Q 009470 506 QQLRR----AGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 506 ~~~~~----~g~~~~a~~~~~~~~~~g~ 529 (534)
..|.. .|+.++|.+.+++..+.|.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 89988 9999999999999998764
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.1e-13 Score=128.77 Aligned_cols=237 Identities=11% Similarity=0.057 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD--KIAFSIVI 225 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll 225 (534)
++.+......+.+.|++++|...|+++.+.. +.+...+..+...|...|++++|++.+++..+.+-.++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566677778888888888888877764 33455777778888888888888888888776331121 23467777
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
..+...|++++|++.|++.....+.+..+|..+...+...|++++|.+.+++..+.. +.+...+..+...+...+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888776666677778888888888888888888887776652 2245556555524444557888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHHcCChHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASR---TEKVLQVYNQMKRLG-CEAD------TITYNFLIDCHCKDGKLED 375 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~g-~~~~------~~~~~~li~~~~~~g~~~~ 375 (534)
|.+.++++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.++ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 888887777664 3345666666777777776 666777777665431 1122 1355556666666667777
Q ss_pred HHHHHHHHHHCC
Q 009470 376 AIKVLNSMVRKG 387 (534)
Q Consensus 376 A~~~~~~m~~~~ 387 (534)
|.+.++++.+..
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 766666666653
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=2.5e-13 Score=124.75 Aligned_cols=200 Identities=13% Similarity=0.018 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI 227 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 227 (534)
+..+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|++.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4466777777788888888888888877764 4467778888888888888888888888877653 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 228 LCRKRRASEAQSFFDSLKD--KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
+...|++++|.+.++++.. ..+.+...+..++..+.+.|++++|.+.++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665 4444566777777777777777777777777766432 245666667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
|...++++.+.. +.+...+..+...+.+.|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777766553 345556666666667777777777777766655
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.8e-13 Score=125.67 Aligned_cols=201 Identities=12% Similarity=0.045 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++....+.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4567778888888888888888888887654 446677788888888888888888888887766666777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009470 263 CRAGNISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKV 341 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (534)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877632233 35566677777777888888888887777664 33566677777777777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777776543 345556666666777777777777777777665
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.8e-14 Score=132.87 Aligned_cols=246 Identities=11% Similarity=0.037 Sum_probs=141.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009470 265 AGNISEAERVFREMKMAGIQ---PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKV 341 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (534)
.|++++|+..++++.+.... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666666554211 124455556666666666666666666666553 23455666666666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
...++++.+.. +.+...+..+..+|...|++++|...++++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66666666543 3345666666666666666777766666666653 33333333334445556777777777665543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH
Q 009470 422 KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE---PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 498 (534)
. +++...+. ++..+...++.++|...++++.+.... .+...+..+...|.+.|++++|...++++++. .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh
Confidence 2 22333332 555556666667777777666443110 01456677777888888888888888888774 3432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 009470 499 SVYEMVLQQLRRAGQLQKHEELV 521 (534)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~a~~~~ 521 (534)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223345566677777776655
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=2.6e-13 Score=132.07 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR-ASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
+...|..+...+.+.|++++|++.+++..+.. +-+..+|+.+..++...|+ +++|+..|+++....+.+..+|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35677777777778888888888888877654 3446667777777777775 777777777776666667777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChh
Q 009470 261 GWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK-ASRTE 339 (534)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~ 339 (534)
.+.+.|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 777777777777777777665332 55666666666667777777777777766664 3356666666666666 44435
Q ss_pred HH-----HHHHHHHHHcCCCCChhhHHHHHHHHHHcC--ChHHHHHHHHHH
Q 009470 340 KV-----LQVYNQMKRLGCEADTITYNFLIDCHCKDG--KLEDAIKVLNSM 383 (534)
Q Consensus 340 ~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 383 (534)
+| +..+++..+.. +-+...|..+...+...| ++++|.+.+.++
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 55 24455544432 233444444444444444 344444444444
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=1.1e-13 Score=128.85 Aligned_cols=233 Identities=12% Similarity=0.087 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 009470 255 YTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP--NSITFNNLMRVH 332 (534)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~ 332 (534)
+......+...|++++|+..|+++.+.... +...+..+...|...|++++|++.+++..+.+..+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334444555555555555555555543211 23344445555555555555555555555422111 122345555555
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009470 333 VKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAH 412 (534)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 412 (534)
...|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443 3344555566666666666666666666655542 224444555552333334666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhCCCHHHHH
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENE-VEPN------VNTYRILITMYCGMGHWNNAY 482 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~ 482 (534)
+.++++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666665543 2234555555666665565 556666666655421 0122 245666777777777777777
Q ss_pred HHHHHHHHc
Q 009470 483 KYIREMIEE 491 (534)
Q Consensus 483 ~~~~~~~~~ 491 (534)
+.++++++.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777774
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=6.5e-14 Score=127.80 Aligned_cols=202 Identities=11% Similarity=0.021 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
.+..|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45567777777788888888888888887764 4567788888888888888888888888877653 345677777777
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
.+...|++++|.+.++++....+.+...+..++..+.+.|++++|.+.++++.+... .+...+..+...+.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 777888888888888877766666777777777777777888888877777766432 2556666777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
.+.++++.+.. +.+..++..+..++.+.|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 77777776654 3356666667777777777777777777766653
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=2.1e-13 Score=132.77 Aligned_cols=234 Identities=11% Similarity=0.060 Sum_probs=196.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL-AAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
....|+.+..++.+.|++++|+..++++.+.+ +-+..+|+.+...+...|+ +++|++.|++..+.. +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45688889999999999999999999999886 5678899999999999997 999999999998865 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR-CGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~ 304 (534)
.++...|++++|+..|+++....+.+..+|..+..++.+.|++++|+..++++++.... +...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998888889999999999999999999999999999987543 67889999999998 66657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC------
Q 009470 305 RA-----HDVFAEMLEVGCEPNSITFNNLMRVHVKAS--RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDG------ 371 (534)
Q Consensus 305 ~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g------ 371 (534)
+| ++.+++.++.. +-+...|+.+..++.+.| ++++|++.+.++ +. .+.+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 58888888775 446788888888888888 689999999887 33 2556777888888887764
Q ss_pred ---ChHHHHHHHHHH-HHC
Q 009470 372 ---KLEDAIKVLNSM-VRK 386 (534)
Q Consensus 372 ---~~~~A~~~~~~m-~~~ 386 (534)
..++|.++++++ .+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 247777777777 544
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.5e-14 Score=134.86 Aligned_cols=220 Identities=13% Similarity=0.037 Sum_probs=106.6
Q ss_pred cCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 161 VRQFDLAWHFIDLMKSRNV---EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEA 237 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 237 (534)
.|++++|...++++.+... +.+..+|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3555666666665555421 1134455556666666666666666666655543 23455555555555556666666
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 238 QSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
.+.|++.....+.+..++..+...+.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666655555444455555555555556666666666655555432 222222233333344455555555554444432
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 318 CEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE---ADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 318 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
+++...+. ++..+...++.++|...+++..+.... .+...+..+..+|.+.|++++|...++++.+
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12222222 333444444445555555444332100 0123344444444444444444444444444
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3.6e-13 Score=121.08 Aligned_cols=200 Identities=13% Similarity=0.045 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++.....+.+..++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3444555555555555555555555554432 223444555555555555555555555555444444555555555555
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 009470 263 CRA-GNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK 340 (534)
Q Consensus 263 ~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (534)
... |++++|...++++.+.+..|+ ...+..+...+...|++++|++.++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 555555555555554211121 3444555555555555555555555555442 2234445555555555555555
Q ss_pred HHHHHHHHHHcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 341 VLQVYNQMKRLGCE-ADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 341 a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555554432 2 3344444444444555555555555555443
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=8.5e-14 Score=127.00 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
....|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++....+.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34556666667777777777777777776543 34566666666777777777777777777665555566667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKV 341 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (534)
+...|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776665432 245556666666666666666666666666553 23455556666666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666665543 334555555555666666666666666655554
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=4.7e-13 Score=120.30 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=177.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
.++..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 356788899999999999999999999998875 4568899999999999999999999999998764 45778899999
Q ss_pred HHHHhc-CCHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 009470 226 SILCRK-RRASEAQSFFDSLKD--KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ 302 (534)
Q Consensus 226 ~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 302 (534)
..+... |++++|.+.++++.. ..+.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 999999 999999999999887 4455578899999999999999999999999987642 257888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 303 ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
+++|.+.++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999988753157778888888899999999999999998765
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=7.5e-14 Score=140.01 Aligned_cols=348 Identities=11% Similarity=0.026 Sum_probs=224.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLA---AEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+...+.+.|++++|.++|++..+.|. ...+..+...|...|+. ++|+++|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677788999999999988877763 24566677777777887 8899998888753 4455555655454
Q ss_pred hcC-----CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 230 RKR-----RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS---EAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 230 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
..+ +.++|...|++......+ ..+..|...|...++.+ ++.+.+....+.| +...+..+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 444 778899998887654333 36777777777665533 3455555555444 3445666777788777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc----CChH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS---RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD----GKLE 374 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~ 374 (534)
.++++......+.+.-...+...+..+...|.+.| +.++|++.|++..+.| .++...+..|...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 66555554333332211223337778888888888 8889999999988887 56666666777777554 6889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 009470 375 DAIKVLNSMVRKGCNPNASTFNMIFRC-I--SKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK-----STDMV 446 (534)
Q Consensus 375 ~A~~~~~~m~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a 446 (534)
+|...|++.. .| +...+..+... + ...++.++|.++|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999887 43 55666666665 4 46889999999999988866 6677777777776 45 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR----AGQLQKHE 518 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 518 (534)
.+++++.. .| +...+..+...|.. ..++++|.++|++..+.+ .++ ....|...|.. ..+.++|.
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~--A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNS--ADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTT--HHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHH--HHHHHHHHHHhCCCCCCCHHHHH
Confidence 99998877 43 56667777766665 348999999999988865 233 35556666553 45888999
Q ss_pred HHHHHHHHcCC
Q 009470 519 ELVEKMVDRGF 529 (534)
Q Consensus 519 ~~~~~~~~~g~ 529 (534)
.++++..+.|.
T Consensus 379 ~~~~~A~~~g~ 389 (452)
T 3e4b_A 379 VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHCCC
Confidence 99988888774
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=9.7e-14 Score=137.56 Aligned_cols=272 Identities=14% Similarity=0.140 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDV----IVYTNLVRGWCRAGNISEAERVFREMKMA----GI-QPNVYT 289 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~ 289 (534)
..+..+...+...|++++|+..|+++....+.+. .+|..+...|...|++++|...+++..+. +. ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556667777888888888887766544444 46777777778888888888887776542 11 112455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCC-----------------hhHHHHHHHH
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEV----G-CEPNSITFNNLMRVHVKASR-----------------TEKVLQVYNQ 347 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 347 (534)
+..+...|...|++++|.+.+++..+. + ......++..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 666777777777888777777776543 1 01123456666667777777 6666666665
Q ss_pred HHHc----CC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 009470 348 MKRL----GC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-PN----ASTFNMIFRCISKLGDVNGAHRMYGK 417 (534)
Q Consensus 348 ~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (534)
..+. +. .....++..+...|...|++++|...+++..+.... .+ ...+..+...+...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 11 111235555666666666666666666665543110 01 12455555566666666666666665
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 418 MKDLKCE-PN----TVTYNILMQMFATSKSTDMVLKLKKEMEENEV-EPN----VNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 418 m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
..+.... .+ ..++..+...|...|++++|...+++..+..- ..+ ..++..+...|...|++++|.+++++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5543110 01 23445555555666666666666655543200 001 22445555555566666666666666
Q ss_pred HHH
Q 009470 488 MIE 490 (534)
Q Consensus 488 ~~~ 490 (534)
+++
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.9e-13 Score=134.89 Aligned_cols=278 Identities=14% Similarity=0.114 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---C---CC
Q 009470 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD----KIAFSIVISILCRKRRASEAQSFFDSLKDK---F---EP 250 (534)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~---~~ 250 (534)
.....+......+...|++++|+..|++..+.+ +.+ ..++..+...+...|++++|...+++.... . +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 455667777778888888888888888887653 223 245666777777778888888877765321 1 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ-PN----VYTYSIVIDALCRCGQ--------------------ITR 305 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~--------------------~~~ 305 (534)
...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2445666777777777777777777776553100 11 2345555566666666 555
Q ss_pred HHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCChHHHHHH
Q 009470 306 AHDVFAEMLEV----GCE-PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC-EADTITYNFLIDCHCKDGKLEDAIKV 379 (534)
Q Consensus 306 A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (534)
|.+.+++..+. +.. ....++..+...+...|++++|...+++..+..- .++..
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------- 224 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------- 224 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH---------------------
Confidence 55555544321 100 0122344444444455555555555444432210 00000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCE-PN----TVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 225 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 225 ----------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 00123444445555555555555555544321000 01 2344455555555566666655555544
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 455 ENEV-EPN----VNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 455 ~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+..- ..+ ..++..+...|...|++++|.++++++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3100 001 33455555566666666666666665544
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1.7e-13 Score=135.86 Aligned_cols=276 Identities=12% Similarity=0.008 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITV----DTFSILVRRYVRAGLAAEAVHAFNRMEEY----GC-APDKI 219 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~ 219 (534)
..+..+...+...|++++|...|+++.+.+. .+. ..|..+...|...|++++|++.+++..+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3455566677778888888888887777642 232 46777777777788888888877776542 11 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDK------FEPDVIVYTNLVRGWCRAGN-----------------ISEAERVFR 276 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 276 (534)
++..+...+...|++++|.+.+++.... .+....++..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 4555555566666666666666554321 11123344445555555555 444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-
Q 009470 277 EMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC-EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE- 354 (534)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~- 354 (534)
+..+.. ...+. ......+..+...+...|++++|...+++..+..-.
T Consensus 208 ~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 432210 00010 011234444555555566666666555554432100
Q ss_pred CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--
Q 009470 355 AD----TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-----PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC-- 423 (534)
Q Consensus 355 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-- 423 (534)
.+ ...+..+...|...|++++|...+++..+.... ....++..+...+...|++++|.+.+++..+...
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01 125556666666777777777766665543110 1135566677777777777777777776654210
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 424 ---EPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN 456 (534)
Q Consensus 424 ---~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 456 (534)
.....++..+...|...|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 011346667777888888888888888877653
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=2.5e-13 Score=134.08 Aligned_cols=239 Identities=14% Similarity=-0.002 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT----VDTFSILVRRYVRAGLAAEAVHAFNRMEEY----GCAP 216 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~ 216 (534)
......+......+.+.|++++|...|+++.+.+. .+ ..+|..+...|...|++++|++.+++..+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34566778888999999999999999999988753 33 367889999999999999999999987542 2112
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CC----HHHHHHHHHHHHhcCC--------------------HH
Q 009470 217 -DKIAFSIVISILCRKRRASEAQSFFDSLKDKFE--PD----VIVYTNLVRGWCRAGN--------------------IS 269 (534)
Q Consensus 217 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~--------------------~~ 269 (534)
...++..+...+...|++++|...+++.....+ .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245677888899999999999999998654211 12 4588899999999999 99
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChh
Q 009470 270 EAERVFREMKMA----GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC-EPN----SITFNNLMRVHVKASRTE 339 (534)
Q Consensus 270 ~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~ 339 (534)
+|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887542 2111 245678888999999999999999998875411 112 225666667777777777
Q ss_pred HHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 340 KVLQVYNQMKRLGCE-AD----TITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 340 ~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
+|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 777777766542100 01 2344444555555555555555555443
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=3.8e-13 Score=128.75 Aligned_cols=135 Identities=10% Similarity=-0.002 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKC-EPN----TVTYNILMQMFATSKSTDMVLKLKKEMEENEV-EPN----V 462 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~----~ 462 (534)
..+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|++++|...+++..+... ..+ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3455666666677777777777766543210 011 23566677777777888888877777654210 011 4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG----SSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
.++..+...+...|++++|.++++++++...-..+ ..++..+...+.+.|++++|.+.++++++.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 56677777888888888888888877663210111 335667778888888888888888888764
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=4.2e-13 Score=128.42 Aligned_cols=274 Identities=14% Similarity=0.103 Sum_probs=130.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc------CCCCHHHH
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD----KIAFSIVISILCRKRRASEAQSFFDSLKDK------FEPDVIVY 255 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 255 (534)
+......+...|++++|+..|+++.+.+ +.+ ...+..+...+...|++++|.+.+++.... .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344445555566666666666555432 112 234445555555555555555555543221 11123455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 009470 256 TNLVRGWCRAGNISEAERVFREMKMAGI-QPN----VYTYSIVIDALCRCGQ--------------------ITRAHDVF 310 (534)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~A~~~~ 310 (534)
..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666665543210 011 2245555555566666 55555555
Q ss_pred HHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 311 AEMLEV----GCE-PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 311 ~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
++.... +.. .....+..+...+...|++++|...+++..+... ..+.
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------- 219 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------- 219 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 444321 100 0122334444444445555555544444332100 0000
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 009470 385 RKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC-EPN----TVTYNILMQMFATSKSTDMVLKLKKEMEEN--- 456 (534)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--- 456 (534)
.....++..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|++++|...+++..+.
T Consensus 220 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 220 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 00112344444455555555555555554432100 001 334555566666666666666666655432
Q ss_pred -CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 457 -EV-EPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 457 -~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+- .....++..+...|.+.|++++|.++++++++.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 011335566667777777777777777777663
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=3.6e-12 Score=125.09 Aligned_cols=230 Identities=10% Similarity=0.037 Sum_probs=122.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C----CCCHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKMA----GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVG--C----EPNSITFN 326 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~----~~~~~~~~ 326 (534)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566777777777777777543 1111 23456666777777777777777777665431 0 01134556
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKRLGCE-A----DTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GC-NPNASTFN 396 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~ 396 (534)
.+...|...|++++|...+++..+..-. . ...++..+..+|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666677777777777776665532100 1 1135556666666666666666666666551 11 22344556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 009470 397 MIFRCISKLGDVNGAHRMYGKMKDLK----CEPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENEVEP-NVNTYRIL 468 (534)
Q Consensus 397 ~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p-~~~~~~~l 468 (534)
.+...+.+.|++++|.+.+++..+.. .......+..+...+...|+ +++|..++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 66666666666666666666554321 01111223444445555555 44444444433 1111 12344455
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 009470 469 ITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~ 490 (534)
...|...|++++|.++++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 5555566666666666555544
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=5.2e-11 Score=112.99 Aligned_cols=236 Identities=8% Similarity=0.053 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHH
Q 009470 252 VIVYTNLVRGWCRA----GNI----SEAERVFREMKMAGIQPNVYTYSIVIDALCR-------CGQI-------TRAHDV 309 (534)
Q Consensus 252 ~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~-------~~A~~~ 309 (534)
...|...+..-.+. ++. ++|..+|++..+.. +-+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 45566666654443 233 67777888777642 2356667666666653 4765 778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009470 310 FAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD-TI-TYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 310 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 387 (534)
|++..+.-.+-+...|..++..+.+.|++++|.++|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 887776311335567777777777888888888888877764 333 33 67777777777788888888888777764
Q ss_pred CCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHH
Q 009470 388 CNPNASTFNMIFRCIS-KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-VEP--NVN 463 (534)
Q Consensus 388 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p--~~~ 463 (534)
. .+...|........ ..|+.++|.++|++..+.. +-+...|..++..+.+.|++++|..++++..+.. ++| ...
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 2 23444443333222 2577778888887776643 2356677777777777778888888887777752 343 356
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
.|..++..+.+.|+.++|..+++++++..
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 67777777777777788877777777753
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=4.5e-12 Score=127.88 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 303 ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRT-EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666777665543 34677888888888889999 99999998888775 4557888888899999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 009470 382 SMVRKGCNPNASTFNMIFRCISKL---------GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS--------KSTD 444 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~ 444 (534)
+..+.. |+...+..+...+... |++++|.+.+++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 988874 5678888888888888 89999999999888765 33678888888888888 8899
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVE---PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELV 521 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 521 (534)
+|...+++..+.. + -+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...|+.++|.+.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988753 3 478888889999999999999999999998864 345667888888888888888888654
Q ss_pred HH
Q 009470 522 EK 523 (534)
Q Consensus 522 ~~ 523 (534)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.2e-11 Score=107.66 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
++.+|..+...+.+.|++++|.+.|++..+.+ +-+..+|..+...|.+.|++++|++.+++..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45667777777777777777777777766664 3456667777777777777777777777666543 334555666666
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
.+...++++.|.+.+++.....+.+...+..+...+.+.|++++|++.|++..+... -+...|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 666667777777776666655566666666666777777777777777766665432 2455666666666666777777
Q ss_pred HHHHHHHHHc
Q 009470 307 HDVFAEMLEV 316 (534)
Q Consensus 307 ~~~~~~m~~~ 316 (534)
++.|++.++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666666654
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.2e-11 Score=107.49 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 321 NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFR 400 (534)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 400 (534)
+...|..+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34445555555555555555555555555443 334455555555555555555555555555544322 3444555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 480 (534)
.+...++++.|.+.+.+..+.. +-+...+..+...|.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 5555566666666665555433 2245555555666666666666666666655542 3345556666666666666666
Q ss_pred HHHHHHHHHH
Q 009470 481 AYKYIREMIE 490 (534)
Q Consensus 481 A~~~~~~~~~ 490 (534)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666665
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=5.3e-12 Score=123.85 Aligned_cols=229 Identities=12% Similarity=0.038 Sum_probs=167.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcc---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDK---FEP---DVIVYTNLVRGWCRAGNISEAERVFREMKMAG--I----QPNVYTYS 291 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~~~~ 291 (534)
....+...|++++|...|++.... .+. ...+|..+...|...|++++|...+++..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667888999999988886542 222 34678888889999999999999888876531 1 11245678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CC-CCChhhHH
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLEVGCE-PN----SITFNNLMRVHVKASRTEKVLQVYNQMKRL----GC-EADTITYN 361 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~ 361 (534)
.+...|...|++++|++.+++..+.... .+ ..++..+..+|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999887653100 11 246778888999999999999999888762 32 33466788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCC-CHHHHHHH
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRK----GCNPNASTFNMIFRCISKLGD---VNGAHRMYGKMKDLKCEP-NTVTYNIL 433 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~l 433 (534)
.+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|..++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8899999999999999999887654 111122335667788888888 77777777765 2222 23467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009470 434 MQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~ 455 (534)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988765
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.2e-09 Score=113.48 Aligned_cols=413 Identities=9% Similarity=0.080 Sum_probs=260.1
Q ss_pred CCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCC-CCC
Q 009470 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQ---FDLAWHFIDLMKSRN-VEI 181 (534)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~-~~~ 181 (534)
+.+......+++.+.. .+.+..+..+|+.+... ++.+...|..-+..-.+.|+ ++.+..+|++..... .++
T Consensus 63 p~d~~~W~~yi~~~~~---~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVS---LKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred cCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 3455555555555432 34577777777777764 55667777777777777777 888888888777653 136
Q ss_pred CHHHHHHHHHHHHHcCCH--------HHHHHHHHHHH-HcCC-CCC-HHHHHHHHHHHH---------hcCCHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLA--------AEAVHAFNRME-EYGC-APD-KIAFSIVISILC---------RKRRASEAQSFF 241 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~~~-~~~~~~ll~~~~---------~~g~~~~A~~~~ 241 (534)
++..|..-+....+.++. +...++|+... ..|. .++ ...|...+.... ..++.+.+..+|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 777777777665555443 23346666654 3455 443 456666665433 233466677777
Q ss_pred HHhhccCCCC--HHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHH--CCCC---------------C----
Q 009470 242 DSLKDKFEPD--VIVYTNLVRGWCRAG-------------NISEAERVFREMKM--AGIQ---------------P---- 285 (534)
Q Consensus 242 ~~~~~~~~~~--~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~--~g~~---------------p---- 285 (534)
++... .|.. ..+|......--..+ +++.|...+.++.. .++. |
T Consensus 218 ~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 218 KTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 77664 2221 233333222211111 12233344443321 1111 1
Q ss_pred -C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHHcCC
Q 009470 286 -N---VYTYSIVIDALCRCG-------QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVL-QVYNQMKRLGC 353 (534)
Q Consensus 286 -~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~g~ 353 (534)
+ ...|...+..--..+ ..+.+..+|++++..- +-+...|...+..+...|+.++|. ++|++.... +
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~ 374 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-I 374 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-C
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-C
Confidence 0 123444443222221 1234556677776653 446778888888888889988896 999988864 3
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCChhHHH
Q 009470 354 EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC---------NPN------------ASTFNMIFRCISKLGDVNGAH 412 (534)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~~~------------~~~~~~l~~~~~~~g~~~~A~ 412 (534)
+.+...|...+....+.|++++|.++|+.+.+... .|+ ..+|...+....+.|+.+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 45666677788888899999999999998876410 131 346777788778889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFATS-KSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
.+|.++.+.-.......|...+..-.+. ++.+.|.++|+...+. ++-+...|..++......|+.+.|..+|++++..
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999998751122334444333333344 4589999999998876 4556677778888888889999999999999885
Q ss_pred CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 492 KCLKP--GSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 492 ~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
.. .+ ....|..+++.-.+.|+.+.+..+.+++.+.-
T Consensus 534 ~~-~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 534 IS-DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp SS-STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred cC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 41 11 34678888888888999999999999998763
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=5.8e-11 Score=112.62 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009470 165 DLAWHFIDLMKSRNVEITVDTFSILVRRYVR-------AGLA-------AEAVHAFNRMEEYGCAPDKIAFSIVISILCR 230 (534)
Q Consensus 165 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 230 (534)
++|..+|+++.... +.+...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665543 3455666666555542 3443 5555555555542012233445555555555
Q ss_pred cCCHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVI-VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC-RCGQITRAHD 308 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~A~~ 308 (534)
.|++++|.++|++.....+.+.. +|..++..+.+.|++++|.++|++..+.+. .+...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555443222332 455555555555555555555555554321 12222222211111 1355555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG-CEA--DTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
+|++..+.. +-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555544432 2234444444555555555555555555554431 122 233444444444445555555555554444
Q ss_pred C
Q 009470 386 K 386 (534)
Q Consensus 386 ~ 386 (534)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=4.1e-12 Score=128.18 Aligned_cols=211 Identities=9% Similarity=0.026 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA-SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFRE 277 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (534)
++++++.+++..... +.+...+..+...+...|++ ++|++.|++..+..+.+..+|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555444322 23455566666666666666 6666666665555555566666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CChhH
Q 009470 278 MKMAGIQPNVYTYSIVIDALCRC---------GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA--------SRTEK 340 (534)
Q Consensus 278 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 340 (534)
..+. .|+...+..+...|... |++++|++.+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6654 34455666666666666 66666666666666553 33455666666666666 66666
Q ss_pred HHHHHHHHHHcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 341 VLQVYNQMKRLGCE---ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 341 a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
|.+.|++..+.. + .+...|..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|.+.+
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666543 2 35556666666666666666666666666655322 4445555556666666666555544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=4.3e-13 Score=127.11 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSR-------NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY------G 213 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 213 (534)
...++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|++.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4557788888888899999999999888763 23445677888888999999999999998887653 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 009470 214 C-APDKIAFSIVISILCRKRRASEAQSFFDSLKDK--------FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA--- 281 (534)
Q Consensus 214 ~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 281 (534)
- +....++..+...+...|++++|.+.+++.... .+....++..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123456777778888888888888888876532 1234456777788888888888888888877653
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 282 ---GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 282 ---g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 244567777778888888888888877765
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.7e-13 Score=126.26 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMA-------GIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV------G 317 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~ 317 (534)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555555555441 11122344555555555566666666555555432 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---
Q 009470 318 C-EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL------GC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK--- 386 (534)
Q Consensus 318 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 386 (534)
. ......+..+...+...|++++|...++++.+. +. ......+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 112344555555555566666666655555432 11 112334555555566666666666666555443
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 387 ---GCNP-NASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 387 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
+..| ...++..+..++...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 223455555566666666666666665543
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=8.6e-11 Score=114.99 Aligned_cols=230 Identities=10% Similarity=0.016 Sum_probs=132.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---C-CCHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGI-QPN----VYTYSIVIDALCRCGQITRAHDVFAEMLEVG--C---E-PNSITF 325 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~---~-~~~~~~ 325 (534)
.....+...|++++|+..|++..+... .++ ...+..+...|...|++++|...+++..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777764311 112 3456667777777777777777777665421 0 1 113456
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 009470 326 NNLMRVHVKASRTEKVLQVYNQMKRL----GCE-ADTITYNFLIDCHCKDGKLEDAIKVLNSMVR-----KGCNPNASTF 395 (534)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~ 395 (534)
+.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++..+ ... ....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHH
Confidence 66667777777777777777766542 111 1124556666777777777777777776665 322 225556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHH
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLK----CEPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENEVEPN-VNTYRI 467 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~-~~~~~~ 467 (534)
..+...+.+.|++++|...+++..+.. .......+..+...+...++ +++|+..+++ .+..++ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 666667777777777777777665421 11112234444445555555 4555554444 221222 234455
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 009470 468 LITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+...|...|++++|.+.|+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666677777777777666654
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=3.7e-09 Score=109.81 Aligned_cols=391 Identities=11% Similarity=0.062 Sum_probs=269.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 009470 131 VLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL---AAEAVHAFN 207 (534)
Q Consensus 131 al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~ 207 (534)
.+.-|+..+... +.+...|..++..+.+.+.++.+..+|+.+...- +.+...|..-+..-.+.|+ ++.+.++|+
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 343444444332 4689999999999999999999999999999884 6788999999999999999 999999999
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHhhcc--C--CCCHHHHHHHHHHHH---------hc
Q 009470 208 RMEEYG-CAPDKIAFSIVISILCRKRRA--------SEAQSFFDSLKDK--F--EPDVIVYTNLVRGWC---------RA 265 (534)
Q Consensus 208 ~m~~~g-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~~~--~--~~~~~~~~~li~~~~---------~~ 265 (534)
+..... ..|+...|...+....+.++. +...++|+..... . ..+...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998753 148888888888766665553 3345777775542 2 335678888887654 34
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC-----------
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG-------------QITRAHDVFAEMLEV--GCE----------- 319 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-------------~~~~A~~~~~~m~~~--~~~----------- 319 (534)
++++.+.++|+++.......-..+|......--..+ +++.|...+.++... ++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 567889999999985322211234433322211111 123334444443221 111
Q ss_pred ----C-----C---HHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHH-HH
Q 009470 320 ----P-----N---SITFNNLMRVHVKAS-------RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAI-KV 379 (534)
Q Consensus 320 ----~-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~ 379 (534)
| + ...|...+..--..+ ..+.+..+|++....- +-+...|...+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 1 234555554332222 1234567788887653 557888888888888999999997 99
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHH
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLK---------CEPN------------TVTYNILMQMFA 438 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~li~~~~ 438 (534)
+++..... +.+...+...+....+.|+++.|.++|+++.+.. -.|+ ..+|...++...
T Consensus 367 l~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 99998753 3466677788888899999999999999987631 0132 346888888888
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 439 TSKSTDMVLKLKKEMEEN-EVEPNVNTYRILITMYCGM-GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQK 516 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 516 (534)
+.|+.+.|..+|....+. + ......|...+..-.+. ++++.|.++|+..++.. +-+...+..+++.....|+.+.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHH
Confidence 899999999999999886 2 22334444333333344 45999999999999973 4567777889998899999999
Q ss_pred HHHHHHHHHHcCC
Q 009470 517 HEELVEKMVDRGF 529 (534)
Q Consensus 517 a~~~~~~~~~~g~ 529 (534)
|+.+|++.++...
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887643
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=3.4e-10 Score=110.44 Aligned_cols=163 Identities=12% Similarity=-0.024 Sum_probs=80.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHH
Q 009470 152 HEMINLAGKVRQFDLAWHFIDLMKSRNVEITV----DTFSILVRRYVRAGLAAEAVHAFNRMEEYGC-APDK----IAFS 222 (534)
Q Consensus 152 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~ 222 (534)
......+...|+++.|...+++........+. .++..+...+...|++++|.+.+++..+..- ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33344555667777777777766554322222 1345555666666777777776666543210 0111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcc-----CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 009470 223 IVISILCRKRRASEAQSFFDSLKDK-----FE--P-DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ----PNVYTY 290 (534)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~-----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~ 290 (534)
.+...+...|++++|.+.+++.... .+ + ....+..+...+...|++++|...+++..+.... .....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4445555566666666665554321 10 1 2234444555555556666665555555432111 012334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 291 SIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
..+...+...|++++|...+++..
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555555544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=3.6e-10 Score=110.22 Aligned_cols=299 Identities=10% Similarity=0.116 Sum_probs=201.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPD-V----IVYTNLVRGWCRAGNISEAERVFREMKMAGI-QPN----VYTY 290 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~ 290 (534)
.......+...|++++|...+++.....+.+ . .+++.+...+...|++++|.+.+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556677899999999998876544333 2 2566777888889999999999988765311 112 2335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC----Chhh
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEV----GCE--P-NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA----DTIT 359 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~----~~~~ 359 (534)
..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+..-.. ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888999999999999887653 221 2 23456667788889999999999998887643211 2346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHH
Q 009470 360 YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--ASTFN----MIFRCISKLGDVNGAHRMYGKMKDLKCEP---NTVTY 430 (534)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~ 430 (534)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+....+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788888899999999999998875421111 11111 23344778899999999998887543221 12356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 431 NILMQMFATSKSTDMVLKLKKEMEEN----EVEPNV-NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 431 ~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
..+...+...|++++|...+++..+. |..++. ..+..+..++...|++++|...+++.++.. +. ...+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---~~----~g~~ 329 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA---NR----TGFI 329 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----HCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh---cc----ccHH
Confidence 67778888899999999988887542 222222 256666778888899999999999888743 11 1123
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 009470 506 QQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 506 ~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
..+...| +....+++.+.+.+
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHHcc--HHHHHHHHHHHhCC
Confidence 3444445 56677777766543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.2e-10 Score=113.96 Aligned_cols=307 Identities=7% Similarity=0.006 Sum_probs=203.9
Q ss_pred CCHHHHHHHHHHH--HccCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH--HHcCCHHHHH---------HHHHH
Q 009470 146 HSPDLYHEMINLA--GKVRQFDLAWHFIDLMKSR--NVEIT--VDTFSILVRRY--VRAGLAAEAV---------HAFNR 208 (534)
Q Consensus 146 ~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~--~~~~~--~~~~~~li~~~--~~~g~~~~A~---------~~~~~ 208 (534)
++..+-+.+-+.| .+.+++++|..+++++.+. ....+ ...|-.++..- ...+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3455556666666 6788888888888877553 22122 23333333321 1112221222 55555
Q ss_pred HHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 209 MEEYGCAPDK----IAFSIVISILCRKRRASEAQSFFDSLKDK---FE---PDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 209 m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
+.....+.+. ..+......+...|++++|...|++.... .+ ....++..+...|...|++++|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432111111 11223344567889999999999987542 11 13467888999999999999999999887
Q ss_pred HHC----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 009470 279 KMA----GI-QP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEV----GCE-PNSITFNNLMRVHVKASRTEKVLQVYNQ 347 (534)
Q Consensus 279 ~~~----g~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (534)
.+. +- .+ ...+++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|.+.+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653 11 11 2456788889999999999999999887653 111 1234677788899999999999999998
Q ss_pred HHHc----CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---hhHHHHHHH
Q 009470 348 MKRL----GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC----NPNASTFNMIFRCISKLGD---VNGAHRMYG 416 (534)
Q Consensus 348 ~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 416 (534)
..+. +.+....++..+...|.+.|++++|...+++..+... ......+..+...+...|+ +++|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8761 2233467788899999999999999999999887521 2223455666667777788 777777776
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 417 KMKDLKCEP-NTVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 417 ~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
+. +..+ ....+..+...|...|++++|...+++..+
T Consensus 328 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 63 2222 234567788899999999999999988764
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=1.8e-10 Score=99.64 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=65.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQI 303 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 303 (534)
+...+...|++++|.+.++++....+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence 33334444444444444444433333344444444444444444444444444443321 11233344444444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 304 TRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 93 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 93 DLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444332 2233344444444444444444444444444332 223334444444444444444444444443
Q ss_pred H
Q 009470 384 V 384 (534)
Q Consensus 384 ~ 384 (534)
.
T Consensus 171 ~ 171 (186)
T 3as5_A 171 N 171 (186)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=1.4e-10 Score=100.37 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=78.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555554432 2344555555555555555555555555554432 233444444445555
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
..|++++|.+.++++....+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555444444444444445555555555555555554444332 11334444444444444444444444
Q ss_pred HHHHH
Q 009470 310 FAEML 314 (534)
Q Consensus 310 ~~~m~ 314 (534)
++++.
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1.9e-10 Score=120.95 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
+++.|+.+..++.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666666666666666666655553 3345566666666666666666666666655543 223455555555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
++.+.|++++|++.|++..+..+.+..+|+.+...|.+.|++++|++.|++..+.... +...|..+...|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666555544455555666666666666666666666555553211 344555555555555555555
Q ss_pred HHHHHHHHH
Q 009470 307 HDVFAEMLE 315 (534)
Q Consensus 307 ~~~~~~m~~ 315 (534)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=1.7e-10 Score=121.28 Aligned_cols=167 Identities=10% Similarity=0.003 Sum_probs=83.5
Q ss_pred hHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009470 109 PSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSI 188 (534)
Q Consensus 109 ~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 188 (534)
|............+...+++++|+..|+.+.+.. +.+...|+.+..+|.+.|++++|...|++..+.+ +.+..+|..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4444444444444444445555555555554421 2234455555555555555555555555555443 234455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (534)
+...|...|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+..+.+...|..+...+...|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 5555555555555555555554432 223445555555555555555555555555444444455555555555555555
Q ss_pred HHHHHHHHHHH
Q 009470 269 SEAERVFREMK 279 (534)
Q Consensus 269 ~~A~~~~~~m~ 279 (534)
++|.+.++++.
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=1.1e-09 Score=98.58 Aligned_cols=133 Identities=14% Similarity=0.001 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
++..+......+.+.|++++|...|++..+.+.+++...+..+...+...|++++|++.|++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3445555555555555555555555555544422344444445555555555555555555554432 122334444555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDV-------IVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.+...|++++|++.+++.....+.+. .+|..+...+...|++++|++.|++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 55555555555555555444433344 2344444444444444444444444443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=1.7e-09 Score=97.35 Aligned_cols=150 Identities=14% Similarity=0.045 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
+...+......+...|++++|++.|++..+...+++...+..+..++...|++++|++.|++.....+.+..+|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45677777777777788888888887777654325666666677777777777777777777766656666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNV-------YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPN---SITFNNLMRV 331 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~ 331 (534)
+...|++++|++.+++..+.... +. ..|..+...+...|++++|++.+++..+. .|+ ...+..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 77777777777777777664221 23 33555556666666666666666666654 232 3444445555
Q ss_pred HHH
Q 009470 332 HVK 334 (534)
Q Consensus 332 ~~~ 334 (534)
+..
T Consensus 163 ~~~ 165 (228)
T 4i17_A 163 FYN 165 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1e-10 Score=108.70 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-------
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEY------GCAP-DKIAFSIVISILCRKRRASEAQSFFDSLKDK------- 247 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------- 247 (534)
...++..+...|...|++++|++.+++..+. +-.| ...++..+...+...|++++|.+.+++....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666666666666666666666665432 1111 2334555556666666666666666554322
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 248 -FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA------GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 248 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
.+....++..+...+...|++++|...++++.+. +..| ...++..+...|...|++++|.+.++++.+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223455666666666666666666666666543 1111 234555566666666666666666666554
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=4.4e-10 Score=105.61 Aligned_cols=165 Identities=10% Similarity=0.014 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCC-C----H
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMKRLGC---EA--DTITYNFLIDCHCKD-GKLEDAIKVLNSMVRKGCNP-N----A 392 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~----~ 392 (534)
+|+.+..+|.+.|++++|+..+++..+... .+ -..++..+...|... |++++|...+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444455555555555555555544433210 00 023455666667664 77777777777666531100 1 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT------VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV---- 462 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~---- 462 (534)
.++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...+++..+. .|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 45667777777778888888888777765422211 14566666777778888888888777653 2221
Q ss_pred --HHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Q 009470 463 --NTYRILITMYC--GMGHWNNAYKYIREMIE 490 (534)
Q Consensus 463 --~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 490 (534)
..+..++.++. ..+++++|++.|+++..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 13344555554 45678888888876654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1.9e-10 Score=106.86 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDK--------FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA------G- 282 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g- 282 (534)
..++..+...+...|++++|+..+++.... .+....++..+...|...|++++|.+.+++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777777888888888888888775432 1334556777777888888888888877776553 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 283 IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV------GCEP-NSITFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
.+.....+..+...|...|++++|.+.++++.+. +..| ...++..+..++...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122455666677777777777777777766554 1111 234555666666666777666666666554
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=3.5e-08 Score=91.28 Aligned_cols=79 Identities=9% Similarity=0.030 Sum_probs=33.3
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI-QPNVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
|+..|+++....+++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444443332223333333444444444444444444444433322 11233344444444444444444444444443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=2.2e-08 Score=92.54 Aligned_cols=179 Identities=7% Similarity=0.013 Sum_probs=86.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC-EPNSITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554433 23334444555555566666666666655544432 1244455555556666666666666666655
Q ss_pred HcCCCC-----ChhhHHHHHHHH--HHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 350 RLGCEA-----DTITYNFLIDCH--CKDG--KLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 350 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 233344444332 1222 566666666665544 23322223333355556666666666654433
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 421 LK---------CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN 456 (534)
Q Consensus 421 ~~---------~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 456 (534)
.. -+-|..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 10 01244444334333333444 555566665553
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=6.3e-09 Score=84.35 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
|..+...+...|++++|+++++++.+.+ +.+...+..+...+...|++++|...++++....+.+...+..++..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3444444555555555555555544432 223444444445555555555555555554443344445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 555555555555544321 13444555555555555555555555555443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=7.8e-09 Score=95.23 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C-CCHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT---VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC-A-PDKIA 220 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~~ 220 (534)
.++..+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... . ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677777788888888888888888887764 233 67788888888888888888888888876531 1 12445
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009470 221 FSIVISILCR--------KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSI 292 (534)
Q Consensus 221 ~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 292 (534)
+..+..++.. .|++++|+..|+++....+.+......+.......++. ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~------------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL------------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 6667777777 88888888888887766555544442221110000000 011234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHc
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEVGCEP--NSITFNNLMRVHVKA----------SRTEKVLQVYNQMKRL 351 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 351 (534)
+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4455555666666666666555542110 123444445555443 5556666666665554
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=8e-09 Score=83.74 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=77.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.++++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45555666666666666666666665543 2345556666666666666666666666665543 334555555666666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
..|++++|.+.++++....+.+..++..++..+.+.|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665554455556666666666666666666666666554
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=1.8e-09 Score=101.40 Aligned_cols=164 Identities=11% Similarity=0.056 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCC--C----CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----H
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFE--P----DVIVYTNLVRGWCRA-GNISEAERVFREMKMAGIQP-N----V 287 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~ 287 (534)
+|+.+..+|.+.|++++|+..+++.....+ . -..+++.+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444444455555555555554444322100 0 133566666667664 77777777777665421000 1 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----
Q 009470 288 YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS------ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD----- 356 (534)
Q Consensus 288 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~----- 356 (534)
.++..+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|...|++..+.. |+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcH
Confidence 45666677777777777777777777665322111 145556666777777777777777765431 21
Q ss_pred -hhhHHHHHHHHH--HcCChHHHHHHHHHHHH
Q 009470 357 -TITYNFLIDCHC--KDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 357 -~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 385 (534)
...+..++.++. ..+++++|...|+.+..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 112333444443 34567777777766544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=1.1e-08 Score=94.23 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC---CCHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD---KIAFSIVISILCRKRRASEAQSFFDSLKDKFE---PDVIVY 255 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 255 (534)
+...+..+...+.+.|++++|++.|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++....| ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34444455555555555555555555554432 111 33444444555555555555555555443322 112334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHH
Q 009470 256 TNLVRGWCR--------AGNISEAERVFREMKM 280 (534)
Q Consensus 256 ~~li~~~~~--------~g~~~~A~~~~~~m~~ 280 (534)
..+..++.+ .|++++|+..|+++.+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 444444444 4555555555554444
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=1.3e-08 Score=90.19 Aligned_cols=161 Identities=7% Similarity=0.018 Sum_probs=78.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 152 HEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSI----------------LVRRYVRAGLAAEAVHAFNRMEEYGCA 215 (534)
Q Consensus 152 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~ 215 (534)
-.....+.+.|++++|...|++..+.+ +.+...|.. +...|.+.|++++|++.|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 334444556666666666666665543 223334444 5555555666666666665555543 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 216 PDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN--ISEAERVFREMKMAGIQPNVYTYSIV 293 (534)
Q Consensus 216 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 293 (534)
-+...+..+..++...|++++|+..|++.....|.+..+|..+...|...|+ .+.+...++.... ..|....+...
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~ 163 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD 163 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence 3445555555555555666666665555555445555555555555544332 2233333333321 11112222223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 009470 294 IDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
..++...|++++|+..|++.++.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 33444455555555555555543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=1.1e-08 Score=90.70 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009470 361 NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS 440 (534)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (534)
..+..+|.+.|++++|...+++..+.... +...+..+..++...|++++|...|++..+.. +-+..+|..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34778888899999999999988887533 67888888899999999999999999988765 33677888888777665
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 441 KS--TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 441 g~--~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
|+ .+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 53 3344555554432 122223344455566778999999999999998 468766554443
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=3.1e-07 Score=85.69 Aligned_cols=217 Identities=9% Similarity=0.010 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 009470 165 DLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG--LAAEAVHAFNRMEEYGCAPDKIAFSIVISIL----CRK---RRAS 235 (534)
Q Consensus 165 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~---g~~~ 235 (534)
++|+++++.+...+ +-...+|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555554 334455555555555555 5666666666655543 22333444333333 333 4556
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHH
Q 009470 236 EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS--EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ------ITRAH 307 (534)
Q Consensus 236 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~A~ 307 (534)
+++++++++.+..+.+..+|+.-.-.+.+.|+++ ++++.++++.+.... |...|+.....+.+.|. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 6666666665555556666665555555555555 666666666655433 55555544444444444 55666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK-VLQVYNQMKRLG--CEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
+.++.++... +-|...|+-.-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666665554 3355566555555555555322 333444433221 12344455555555555555555555555554
Q ss_pred H
Q 009470 385 R 385 (534)
Q Consensus 385 ~ 385 (534)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 4
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=5e-07 Score=84.33 Aligned_cols=216 Identities=9% Similarity=0.070 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---CCHHH
Q 009470 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG--NISEAERVFREMKMAGIQPNVYTYSIVIDAL----CRC---GQITR 305 (534)
Q Consensus 235 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g~~~~ 305 (534)
++|++.++.+....|.+..+|+.-...+...| ++++++++++.+...+.+ +..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34555555544444444555555555555554 555555555555544322 333333332222 222 44555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC------hHHHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTE--KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGK------LEDAI 377 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~------~~~A~ 377 (534)
++++++.+.+.. +-+..+|+--.-++.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.|+ +++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 555555555543 224445544444444445444 5555555555443 3344444443333333333 44444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 378 KVLNSMVRKGCNPNASTFNMIFRCISKLGDVNG-AHRMYGKMKDLK--CEPNTVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 378 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
+.+++++...+. |...|+-....+.+.|+... +..+..++.+.+ -..+...+..++..|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 444444444322 44444444444444443222 222333332211 01233444444444444444444444444444
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=7e-08 Score=85.71 Aligned_cols=176 Identities=13% Similarity=0.051 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC----ChHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDG----KLEDAIKVL 380 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 380 (534)
+|++.|++..+.| +...+..+...|...+++++|.++|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 55666666666666777777777777666654 44555555555555 4 666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISK----LGDVNGAHRMYGKMKDLKCE-PNTVTYNILMQMFAT----SKSTDMVLKLKK 451 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~l~~ 451 (534)
++..+.| +...+..+...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|..+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666554 45555566666655 56666666666666654411 014555566666655 556666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHcC
Q 009470 452 EMEENEVEPNVNTYRILITMYCGM-G-----HWNNAYKYIREMIEEK 492 (534)
Q Consensus 452 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~ 492 (534)
+..+. ..+...+..|...|... | ++++|+++|++..+.+
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66654 12333444455555432 2 5666666666666543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=5.5e-09 Score=110.15 Aligned_cols=173 Identities=12% Similarity=0.021 Sum_probs=107.5
Q ss_pred HhcCCHHHHHHHHHHhh--------ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 229 CRKRRASEAQSFFDSLK--------DKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
...|++++|++.+++.. ...+.+...+..+...+.+.|++++|++.|+++.+.+.. +...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 45667777777777665 444556666677777777777777777777776654322 455666666667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 009470 301 GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVL 380 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (534)
|++++|++.|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777766654 2245566666666777777777 77777666654 345566666667777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISKLG 406 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~~g 406 (534)
+++.+.+.. +...+..+..++...+
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccC
Confidence 766654311 2445555555554433
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=5.1e-09 Score=110.36 Aligned_cols=174 Identities=7% Similarity=-0.038 Sum_probs=146.7
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 194 VRAGLAAEAVHAFNRME--------EYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 194 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.|++..+..+.+...|..+...+.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999987 432 445678889999999999999999999999887788999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY 345 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (534)
|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999886432 57788899999999999999 99999999875 447888999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHcCC
Q 009470 346 NQMKRLGCEADTITYNFLIDCHCKDGK 372 (534)
Q Consensus 346 ~~~~~~g~~~~~~~~~~li~~~~~~g~ 372 (534)
++..+.. +.+...+..+..++...++
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCC
Confidence 9988764 3346677777777766555
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=4.1e-06 Score=84.31 Aligned_cols=354 Identities=8% Similarity=-0.018 Sum_probs=207.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH-cCCC-CCHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL-AAEAVHAFNRMEE-YGCA-PDKIAFSIVIS 226 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~-~g~~-~~~~~~~~ll~ 226 (534)
+|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+.... .|.. .+...|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 33333333333 6777777777777664 3577777777776666653 3455666666553 3432 24555555555
Q ss_pred HHH----hcCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 227 ILC----RKRRASEAQSFFDSLKDKFEPD--VIVYTNLVRGWC-------------RAGNISEAERVFREMKMAGIQPNV 287 (534)
Q Consensus 227 ~~~----~~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~ 287 (534)
.+. ..|+.+.+.++|++... .|.. ...|......-. ..+.+..|..+++++...-...+.
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 432 23556677777777655 2221 112222211110 011233344444444321000133
Q ss_pred HHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 009470 288 YTYSIVIDALCRC--GQ-----ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITY 360 (534)
Q Consensus 288 ~~~~~ll~~~~~~--g~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 360 (534)
..|...+..-... |- .+.+..+|++++... +-+...|...+..+.+.|+.++|..++++.... +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 3555544432221 11 345677888888754 456788888888888999999999999999887 3333333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 009470 361 NFLIDCHCKDGKLEDAIKVLNSMVRKG---------C---NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428 (534)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (534)
. .|....+.++. ++.+.+.- . ......|...+....+.++.+.|..+|++. ... ..+..
T Consensus 250 ~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 L----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp H----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred H----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 2 22222222222 22222210 0 011245666677777788899999999999 321 23445
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 009470 429 TYNILMQMFAT-SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQ 507 (534)
Q Consensus 429 ~~~~li~~~~~-~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 507 (534)
.|...+..-.. .++.+.|..+|+...+.. +-+...+...+....+.|+.+.|..+|+++. .....|...++.
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~f 393 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 55433332222 346999999999988752 3345566777887788999999999999872 246778888888
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 009470 508 LRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 508 ~~~~g~~~~a~~~~~~~~~ 526 (534)
-...|+.+.+..+++++.+
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7888999999999988875
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=7.5e-08 Score=86.40 Aligned_cols=186 Identities=11% Similarity=-0.005 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK----IA 220 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~ 220 (534)
++..+..+...+.+.|++++|...|+++.+.... .....+..+..+|.+.|++++|++.|+++.+.. |+. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4556667777888899999999999998876422 124678888899999999999999999988753 321 23
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 221 FSIVISILCR------------------KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 221 ~~~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
+..+..++.. .|+.++|...|+++....|.+..++........ +...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~--- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH---
Confidence 4444444443 456777777777776665555444432211100 000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 283 IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP--NSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
.....+...|.+.|++++|+..|+++++..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 012345677888999999999999988763111 12467778889999999999999999888764
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=1.3e-08 Score=87.45 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=99.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI-LC 229 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~ 229 (534)
+......+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++..+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566667777777777777766554 3456777777777777777777777777765543 344333222211 11
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHD 308 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~ 308 (534)
..++..+|...+++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22223345666666665556666777777777777777777777777766653322 24456666666777777777776
Q ss_pred HHHHHH
Q 009470 309 VFAEML 314 (534)
Q Consensus 309 ~~~~m~ 314 (534)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=3.4e-08 Score=92.33 Aligned_cols=163 Identities=10% Similarity=0.019 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYS-IVIDA 296 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~ 296 (534)
...+..+...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|...++++... .|+..... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 3344445555555555555555555555544555555555555556666666666555555443 22322111 11222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHHHcCChHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE-ADTITYNFLIDCHCKDGKLED 375 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~ 375 (534)
+...++.++|.+.+++..+.. +.+...+..+...+...|++++|...|.++.+..-. .+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 344455555555555555543 234555555555555555555555555555544211 113445555555555555555
Q ss_pred HHHHHHHH
Q 009470 376 AIKVLNSM 383 (534)
Q Consensus 376 A~~~~~~m 383 (534)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=1.6e-07 Score=83.36 Aligned_cols=175 Identities=13% Similarity=0.126 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHH
Q 009470 341 VLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG----DVNGAHRMYG 416 (534)
Q Consensus 341 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 416 (534)
|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + +.++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554432 44455555555555555666666555555543 34445555555544 4 5555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHHHH
Q 009470 417 KMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVE-PNVNTYRILITMYCG----MGHWNNAYKYIRE 487 (534)
Q Consensus 417 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 487 (534)
+..+.| +...+..|...|.. .+++++|.+++++..+.|.. .+...+..|...|.. .+++++|+++|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555533 44445555555544 45555555555555554310 013444555555555 4555556665555
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 009470 488 MIEEKCLKPGSSVYEMVLQQLRRA-G-----QLQKHEELVEKMVDRG 528 (534)
Q Consensus 488 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~g 528 (534)
..+.+ .+...+..|...|... | +.++|.+++++..+.|
T Consensus 155 A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55531 2233344444444332 2 5555555555555554
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=5.3e-08 Score=91.03 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-H
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV-I 225 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-l 225 (534)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|++.++++.... |+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44556666666666777777777777666654 3455666666777777777777777776665432 343322222 2
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ-PNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~ 304 (534)
..+.+.++.++|.+.+++.....|.+...+..+...+...|++++|+..|.++.+.... .+...+..++..|...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 22445556666666666666555666666666666666666666666666666654322 12445666666666666666
Q ss_pred HHHHHHHHHH
Q 009470 305 RAHDVFAEML 314 (534)
Q Consensus 305 ~A~~~~~~m~ 314 (534)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665543
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=1.6e-07 Score=84.16 Aligned_cols=187 Identities=10% Similarity=0.069 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 009470 321 NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE-A-DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA--STFN 396 (534)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 396 (534)
+...+..+...+.+.|++++|...|+++.+..-. + ....+..+..+|.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777888999999999999998876311 1 1356778888999999999999999999887432111 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 397 MIFRCISK------------------LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEV 458 (534)
Q Consensus 397 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 458 (534)
.+..++.. .|+.++|...|+++.+.... +...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 45555543 45666666666666654311 22222111110 00000000
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS----SVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.....+...|.+.|++++|+..|+++++.. |+. ..+..+..++.+.|+.++|.+.++.+...+.
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 111345667888999999999999999864 432 4677888999999999999999998887654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=3.6e-08 Score=93.17 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--hhhHHHHH
Q 009470 295 DALCRCGQITRAHDVFAEMLEVGC---EP--NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC---EAD--TITYNFLI 364 (534)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~---~~~--~~~~~~li 364 (534)
..|...|++++|.+.+.+..+... .+ -..+|+.+..+|.+.|++++|+..|++..+.-. .+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666665543210 00 123455555556666666666666655443210 011 23344444
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 365 DCHCKDGKLEDAIKVLNSMVRKGCNP-----NASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
..|.. |++++|...+++..+..... ...++..+...+.+.|++++|.+.|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444 55555555555444321000 02334444444455555555555554443
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=1e-08 Score=85.60 Aligned_cols=106 Identities=7% Similarity=-0.047 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 232 RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFA 311 (534)
Q Consensus 232 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 311 (534)
|++++|++.++......+.+...+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|+
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 34444444444433322222333334444444444444444444444433211 33344444444444444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 009470 312 EMLEVGCEPNSITFNNLMRVHVKASRTE 339 (534)
Q Consensus 312 ~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (534)
+..+.. +-+...|..+...+.+.|+.+
T Consensus 90 ~al~~~-p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 90 RSVELN-PTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCChH
Confidence 444432 113334444444444444443
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=3.5e-08 Score=84.80 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
..+.+.|++++|...|++.....|.+...+..+...+.+.|++++|+..+++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 344445555555555554444334444555555555555555555555554443
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=2.4e-08 Score=94.39 Aligned_cols=226 Identities=12% Similarity=0.066 Sum_probs=154.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 195 RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR-KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAER 273 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (534)
..|++++|.+++++..+.. +. .+.+ .++++.|...|++. +..|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 3577888888888876532 11 1222 57788887777654 456788999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHHcCChhHHHH
Q 009470 274 VFREMKMA----GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC---EPN--SITFNNLMRVHVKASRTEKVLQ 343 (534)
Q Consensus 274 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~~~li~~~~~~g~~~~a~~ 343 (534)
.|.+..+. |-.. -..+|+.+...|.+.|++++|+..+++..+.-. .+. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887653 1111 145788888999999999999999998765411 121 3567778888888 99999999
Q ss_pred HHHHHHHcCCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 009470 344 VYNQMKRLGCEA-----DTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GCNPN-ASTFNMIFRCISKLGDVNGAHR 413 (534)
Q Consensus 344 ~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 413 (534)
.|++..+..-.. ...++..+...|.+.|++++|...+++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887542111 1467888899999999999999999998864 21111 2255666677777899999999
Q ss_pred HHHHHHhCCCCC-CH---HHHHHHHHHHHhcCCHHHHHH
Q 009470 414 MYGKMKDLKCEP-NT---VTYNILMQMFATSKSTDMVLK 448 (534)
Q Consensus 414 ~~~~m~~~~~~p-~~---~~~~~li~~~~~~g~~~~a~~ 448 (534)
.|++.. ..... +. .....++..+ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 998887 42110 11 1233444444 4566555544
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=4.9e-08 Score=100.88 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=101.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 161 VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSF 240 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 240 (534)
.|++++|.+.+++..+.. +.+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367778888887776654 4456778888888888888888888888877653 34566777777788888888888888
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 009470 241 FDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC---GQITRAHDVFAEMLEVG 317 (534)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~~ 317 (534)
+++..+..+.+...+..+...+.+.|++++|.+.+++..+... -+...+..+...+... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8877766666777888888888888888888888888776532 2466677777777777 78888888888777764
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=6e-08 Score=100.23 Aligned_cols=154 Identities=9% Similarity=-0.019 Sum_probs=101.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 196 AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVF 275 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (534)
.|++++|++.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+..+.+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467778888888776643 3356677777777888888888888888877766667778888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHcC
Q 009470 276 REMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA---SRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~g 352 (534)
++..+... -+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 87776532 246677777777888888888888888777764 33566777777777777 77788888887777664
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=9.5e-09 Score=85.78 Aligned_cols=141 Identities=7% Similarity=-0.046 Sum_probs=73.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 193 YVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAE 272 (534)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (534)
+...|++++|++.+++..... +-+...+..+...|.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 334455555555555543321 1112234445555566666666666666655555555666666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 273 RVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV-FAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 273 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
..|++..+.... +...|..+...|.+.|++++|.+. +++..+.. +-+...|......+...|
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666666554221 345555566666666666554443 35555443 224444544444444443
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=2.5e-05 Score=78.53 Aligned_cols=344 Identities=11% Similarity=-0.002 Sum_probs=218.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----HcCC
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQ-FDLAWHFIDLMKSR-NV-EITVDTFSILVRRYV----RAGL 198 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~ 198 (534)
+.+..+..+|+..... .|+.++|...+....+.+. .+....+|+..... |. +.+...|...+..+. .+|+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 5688899999998864 3588999998888877764 45677788877654 32 346788888887654 3567
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHh
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCR-------------KRRASEAQSFFDSLKDKFE-PDVIVYTNLVRGWCR 264 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~ 264 (534)
.+.+.++|++........-...|......-.. .+.+..|..+++.+....+ .+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88999999999874211111222222211100 1223334444444432211 134456555554322
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 265 AG--N-----ISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 265 ~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
.+ - .+.+..+|+++.... +-+...|...+..+.+.|+.++|.+++++.... +.+...+. .|....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 21 1 345678899888753 345778888888888999999999999999988 33433332 2233222
Q ss_pred hhHHHHHHHHHHHcC---------C---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009470 338 TEKVLQVYNQMKRLG---------C---EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 405 (534)
.++. ++.+.+.- . ......|...+..+.+.++.+.|..+|+++ +.. ..+...|...+..-...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH
Confidence 2222 22222210 0 011245666677777788999999999999 321 23444554333322223
Q ss_pred -CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009470 406 -GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKY 484 (534)
Q Consensus 406 -g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 484 (534)
++.+.|..+|+...+.. .-+...|...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+.++
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36999999999988743 2245566777888888999999999999972 2567788888777788999999998
Q ss_pred HHHHHH
Q 009470 485 IREMIE 490 (534)
Q Consensus 485 ~~~~~~ 490 (534)
++++.+
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.80 E-value=5.3e-06 Score=78.26 Aligned_cols=174 Identities=8% Similarity=-0.020 Sum_probs=109.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK-R-RASE 236 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~ 236 (534)
+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3344456777777776665 345666776666666666 4777777777777654 34556666665555555 5 6677
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS--------EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ------ 302 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------ 302 (534)
++++++++.+..+.+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 777777777766667777766555554444444 677777777765433 66666666666666554
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 303 -ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 303 -~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
++++++.+++++... +-|...|+-+-..+.+.|+
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777766654 3366666665555555554
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=4.6e-06 Score=78.64 Aligned_cols=172 Identities=10% Similarity=0.032 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 009470 197 GLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR-RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA-G-NISEAER 273 (534)
Q Consensus 197 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~ 273 (534)
+..++|+++++++...+ +-+..+|+.--..+...| .+++++++++.+....+.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44568999999998865 345667887777777788 599999999999888888999999888777776 7 8899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------h
Q 009470 274 VFREMKMAGIQPNVYTYSIVIDALCRCGQIT--------RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR-------T 338 (534)
Q Consensus 274 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~ 338 (534)
+++++.+...+ |..+|+...-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+.++ +
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 99999876543 6777776666666666565 7888888888776 3477777777766666665 4
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 009470 339 EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGK 372 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 372 (534)
+++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 66777776666654 4556666665555555544
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=1.4e-06 Score=81.53 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=113.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHH
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGC-NPNA----STFNMIFRCISKLGDVNGAHRMYGKMKDLKCE-PN----TVTYNI 432 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 432 (534)
.+..+...|++++|..++++..+... .++. ..+..+...+...|++++|...++++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888776422 1221 12334666667777888888888888763222 22 236788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC-CHHHHH
Q 009470 433 LMQMFATSKSTDMVLKLKKEMEE----N-EVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEK---CLKP-GSSVYE 502 (534)
Q Consensus 433 li~~~~~~g~~~~a~~l~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~ 502 (534)
+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|+++++++++.. +..+ -...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888999999888888763 1 11122 2367788888899999999999988877531 1112 256788
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHH
Q 009470 503 MVLQQLRRAGQ-LQKHEELVEKMVD 526 (534)
Q Consensus 503 ~l~~~~~~~g~-~~~a~~~~~~~~~ 526 (534)
.+..++.+.|+ .++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888894 6889888888764
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=9.3e-07 Score=78.16 Aligned_cols=127 Identities=9% Similarity=-0.028 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
+..+...+...|++++|++.|++.. .++...+..+...+...|++++|++.|++.....+.+...|..+...+...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3345555666666666666665552 345566666666666666666666666666555555666666667777777
Q ss_pred CCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 266 GNISEAERVFREMKMAGIQ--------------P-NVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|++++|.+.|++..+.... | ....+..+..+|.+.|++++|.+.++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777666653211 1 1245666666677777777777777776665
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=7.4e-07 Score=78.82 Aligned_cols=128 Identities=12% Similarity=-0.004 Sum_probs=109.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+...|++++|...|++.. .++...|..+...|...|++++|++.|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35566777888999999999998773 4577899999999999999999999999998764 456788999999999
Q ss_pred hcCCHHHHHHHHHHhhccCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDV----------------IVYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
..|++++|.+.|++.....+.+. ..+..+...+.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999877554444 889999999999999999999999998764
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=3.6e-06 Score=78.72 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=75.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVI------VYTNLVRGWCRAGNISEAERVFREMKMAGIQ-PN----VYTYSIV 293 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 293 (534)
+..+...|++++|...+++.....+.+.. .+..+...+...|++++|+..+++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34445555555555555554432211111 2223444455555666666666666552111 11 2245556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-hhhHHH
Q 009470 294 IDALCRCGQITRAHDVFAEMLEV-----GCEPN-SITFNNLMRVHVKASRTEKVLQVYNQMKRL----GCEAD-TITYNF 362 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~ 362 (534)
...|...|++++|+..++++.+. +..+. ..++..+...|.+.|++++|...+++..+. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666655421 11111 224455555556666666666555554332 11111 344555
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHH
Q 009470 363 LIDCHCKDGK-LEDAIKVLNSMV 384 (534)
Q Consensus 363 li~~~~~~g~-~~~A~~~~~~m~ 384 (534)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555552 355555555443
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=2e-06 Score=80.53 Aligned_cols=163 Identities=11% Similarity=0.038 Sum_probs=79.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HHHHHH
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPN-----ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC---EPN--TVTYNI 432 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~ 432 (534)
.+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++..+... .+. ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34445555555555555555544321110 01122334444555566666666665543211 111 235555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC-CHHHHH
Q 009470 433 LMQMFATSKSTDMVLKLKKEMEEN--EVEPN----VNTYRILITMYCGMGHWNNAYKYIREMIEEK---CLKP-GSSVYE 502 (534)
Q Consensus 433 li~~~~~~g~~~~a~~l~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~ 502 (534)
+...|...|++++|...+++..+. ..+.+ ..++..+...|.+.|++++|+++++++++.. +... -...|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 566666666666666666655421 00111 1355555666666666666666666655421 0000 134555
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHH
Q 009470 503 MVLQQLRRAGQLQKH-EELVEKMV 525 (534)
Q Consensus 503 ~l~~~~~~~g~~~~a-~~~~~~~~ 525 (534)
.+...+.+.|+.++| ...+++..
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 566666666666666 55455443
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=8.3e-07 Score=74.77 Aligned_cols=126 Identities=10% Similarity=-0.003 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
.|..+...+...|++++|++.|++..+.. +.+..++..+...+...|++++|.+.+++.....+.+...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555555555555555554432 22344455555555555555555555555544444455555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHH
Q 009470 265 AGNISEAERVFREMKMAGIQPNVYTY--SIVIDALCRCGQITRAHDVFAE 312 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~A~~~~~~ 312 (534)
.|++++|...+++..+.... +...+ ..++..+.+.|++++|++.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555555555555443211 22222 1222224444555555555444
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=7.8e-07 Score=74.94 Aligned_cols=131 Identities=10% Similarity=-0.044 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI 227 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 227 (534)
...+..+...+...|+++.|...|++..+.. +.+..++..+...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3567788888999999999999999988875 4578899999999999999999999999998764 4567888999999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR--GWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++++|.+.|++.....+.+...+..+.. .+.+.|++++|.+.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999988776767777754444 47888999999999887643
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=1.5e-06 Score=79.30 Aligned_cols=187 Identities=6% Similarity=-0.106 Sum_probs=104.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSIL-------VRRYVRAGLAAEAVHAFNRMEEYGCAPD--------------- 217 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 217 (534)
..++.+.|.+.|.++...+ +-....|..+ ...+.+.++..+++..+.+-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4577777777777777665 3455666666 3455554444455444444332 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HH
Q 009470 218 -------KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN--VY 288 (534)
Q Consensus 218 -------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ 288 (534)
..........+...|++++|.+.|+.+....+.+. ....+...+.+.+++++|+..|+...... .|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 12233345556666777777777766655433333 55555666667777777777776443321 110 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVGCEPN--SITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
.+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455566666667777777777766654322132 224444555666666666666666666655
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=1.5e-06 Score=69.02 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|+.+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444455555555555555444432 2234444444444445555555555554444332 22333444444444
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNL 258 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 258 (534)
...|++++|...++++....+.+...+..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 117 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNL 117 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 444444444444444433333333333333
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=1.7e-06 Score=68.62 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...|..+...+...|++++|+++++++.+.. +.+..++..+...+.+.|++++|...++++....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3456666666666677777777666665543 234555566666666666666666666665554455555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009470 263 CRAGNISEAERVFREMKMA 281 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~ 281 (534)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=4.9e-07 Score=79.16 Aligned_cols=154 Identities=15% Similarity=0.043 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA----GIQ-PNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~~~ 305 (534)
.|++++|.+.++.+.........++..+...+...|++++|...+++..+. |.. .....+..+...|...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555333332221223444555555555555555555555554431 111 112344445555555555555
Q ss_pred HHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHHcCChH
Q 009470 306 AHDVFAEMLEV----GCEP--NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC-EAD----TITYNFLIDCHCKDGKLE 374 (534)
Q Consensus 306 A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~ 374 (534)
|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+..- ..+ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 55555554332 1011 122344445555555555555555555432100 001 122344445555555555
Q ss_pred HHHHHHHHHH
Q 009470 375 DAIKVLNSMV 384 (534)
Q Consensus 375 ~A~~~~~~m~ 384 (534)
+|.+.+++..
T Consensus 165 ~A~~~~~~al 174 (203)
T 3gw4_A 165 EAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=1.1e-06 Score=70.52 Aligned_cols=103 Identities=11% Similarity=-0.064 Sum_probs=46.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR 230 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 230 (534)
+......+.+.|++++|.+.|++..+.+ +.+...|..+..+|.+.|++++|++.|++..+.+ +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444444555555555554444443 2344444444444555555555555544444432 2233444444444444
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVY 255 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~ 255 (534)
.|++++|++.|++..+..|.+...+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~ 118 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAR 118 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 4444444444444443333333333
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=2.2e-07 Score=86.47 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.+++.....+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666667777777777777777766543 23556666666677777777777777777666556666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKM 280 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766654
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=4.8e-06 Score=77.86 Aligned_cols=163 Identities=10% Similarity=-0.018 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhccC----CCC--H
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK------IAFSIVISILCRKRRASEAQSFFDSLKDKF----EPD--V 252 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~--~ 252 (534)
.+...+..+...|++++|++.+++..+... ... ..+..+...+...|++++|+..+++..... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 444456666777777777777776655321 111 112223344455566666666666543211 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-C
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKM---A-GIQP--NVYTYSIVIDALCRCGQITRAHDVFAEMLEVG----CEP-N 321 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~-~ 321 (534)
.+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|++.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4566666666666666666666666552 1 1111 11355566666666666666666666554321 011 1
Q ss_pred HHHHHHHHHHHHHcCChhHH-HHHHHHH
Q 009470 322 SITFNNLMRVHVKASRTEKV-LQVYNQM 348 (534)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a-~~~~~~~ 348 (534)
..+|..+..+|.+.|+.++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34555555666666666666 4445444
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=1.5e-06 Score=69.82 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++..+..+.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 345555666666666666666666665543 3345556666666666666666666666655544555666666666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 009470 264 RAGNISEAERVFREMKMA 281 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~ 281 (534)
..|++++|++.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666665553
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=1e-06 Score=70.97 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555555556666666666666555543 2345555555555555555665555555555432 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
++.+.|++++|.+.|++.....+.+...+..+...+.+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 55555555555555555444333334444444444443
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=2e-07 Score=86.70 Aligned_cols=194 Identities=12% Similarity=0.046 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|++.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56778888999999999999999999998875 4578899999999999999999999999998764 456788899999
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
++...|++++|...|++.....+.+...+...+....+. .++.. +..........+......+.. + ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 999999999999999987543221111111122211111 11111 222222333334444333322 2 36888888
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 009470 307 HDVFAEMLEVGCEPNS-ITFNNLMRVHVKA-SRTEKVLQVYNQMKR 350 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 350 (534)
++.++...+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888777665 3443 3333333334443 567778888877654
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=1.7e-06 Score=69.19 Aligned_cols=95 Identities=9% Similarity=0.005 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
.+..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34444444444444444444444444322 22333444444444444444444444444433333344444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 009470 265 AGNISEAERVFREMKM 280 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~ 280 (534)
.|++++|.+.+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=5.8e-07 Score=78.69 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMA----GIQP--NVYTYSIVIDALCRCGQITRAHDVFAEMLEVG---CEPN-- 321 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~-- 321 (534)
.++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+.. ..+.
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 44555566666666666666666555432 1111 13345556666666677777776666654321 0111
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 322 SITFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
..++..+...+...|++++|.+.+++..+
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22345666677777777777777766654
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=1.3e-06 Score=70.37 Aligned_cols=118 Identities=8% Similarity=-0.097 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
.+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345666777777777777777777777766543 3355666666666667777777777777666555556666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 261 GWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
.+.+.|++++|.+.|++..+.... +...+..+...+.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 777777777777777666554211 233444444444443
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=2.1e-06 Score=68.67 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (534)
.+..+...+...|++++|...+++.....+.+...+..+...+...|++++|.+.+++..+... .+...+..+...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHHH
Confidence 3344444444555555555555544443344444444555555555555555555544444321 123344444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 300 CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
.|++++|.+.+++..+.. +.+...+..+..++.+.|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 444444444444444432 123333444444444333
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=2.1e-06 Score=71.22 Aligned_cols=97 Identities=7% Similarity=-0.108 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
..+..+...+.+.|++++|.+.|+++.+.. +-+...|..+..+|...|++++|+..+++..+.. +-+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 455566666777777777777777776654 2356667777777777777777777777776653 33456666777777
Q ss_pred HhCCCHHHHHHHHHHHHHc
Q 009470 473 CGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~ 491 (534)
.+.|++++|++.|+++++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777763
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=5.1e-07 Score=74.98 Aligned_cols=98 Identities=13% Similarity=0.001 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..|++.....|.+...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4455556666666666666666666665543 334555666666666666666666666665555555556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009470 263 CRAGNISEAERVFREMKMA 281 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~ 281 (534)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666553
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.5e-06 Score=82.98 Aligned_cols=124 Identities=11% Similarity=-0.020 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--------------ASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
+...+..+...|.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666777777777777777777766532211 244444444444555555555555544443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009470 422 KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNA 481 (534)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 481 (534)
. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+...+.+.|++++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 1234444444444444444444444444444431 22334444444444444444444
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=7e-07 Score=76.48 Aligned_cols=120 Identities=7% Similarity=0.103 Sum_probs=81.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI-LCRKRRA--SE 236 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~ 236 (534)
..|++++|...++...+.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4466677777777666554 3456777777777777777777777777776543 3355566666666 5667776 77
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
|...+++.....+.+...+..+...+...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777776666666777777777777777777777777777765
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=1.8e-06 Score=78.71 Aligned_cols=126 Identities=9% Similarity=-0.030 Sum_probs=59.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHHc
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA--DTITYNFLIDCHCKD 370 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~ 370 (534)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .+ ....+..+..++.+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3444555555555555555554432 222233333445555555555555555333211 01 012444455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 371 GKLEDAIKVLNSMVRKGCNPN--ASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555543221122 223444444555555555555555555543
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=5.9e-07 Score=74.50 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34556667777778888888888888777654 3367777777788888888888888888877753 445667777788
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 009470 471 MYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+|...|++++|++.|+++++..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888887753
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1.1e-06 Score=75.12 Aligned_cols=119 Identities=8% Similarity=0.077 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--HHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA-LCRCGQI--TRAH 307 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~--~~A~ 307 (534)
.|++++|...+++.....+.+...|..+...|...|++++|...|++..+... .+...+..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 44455555555554444444555555555555555555555555555544321 134444444444 4455555 5555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
..++++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555543 223444555555555555555555555555544
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.50 E-value=3.5e-07 Score=80.12 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=69.6
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--------------HHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ-PN--------------VYTYSIVI 294 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~~~~~ll 294 (534)
..|+++++.+.++.-..........+..+...+.+.|++++|+..|++..+.... ++ ...|..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444444444443222111113445566666667777777777777776653211 10 14455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChH
Q 009470 295 DALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLE 374 (534)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 374 (534)
.+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++.+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence 55555566666655555555543 2344555555555555555555555555555442 223444444444444444444
Q ss_pred HHH
Q 009470 375 DAI 377 (534)
Q Consensus 375 ~A~ 377 (534)
++.
T Consensus 174 ~~~ 176 (198)
T 2fbn_A 174 KKD 176 (198)
T ss_dssp C--
T ss_pred HHH
Confidence 333
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.50 E-value=2.6e-07 Score=80.95 Aligned_cols=132 Identities=12% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCE-P--------------NTVTYNILMQMFATSKSTDMVLKLKKEMEENEV 458 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 458 (534)
.+..+...+...|++++|.+.|++..+.... + ....|..+..+|...|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444455555556666666666555543211 0 02567777778888888888888888877753
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcC
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHE-ELVEKMVDRG 528 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~g 528 (534)
+.+...+..+..+|...|++++|++.|+++++.. +.+...+..+..++...|+.+++. ..+..|...|
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566777788888888888888888888888753 345566677777777777776666 4555555444
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=3.6e-06 Score=80.41 Aligned_cols=87 Identities=7% Similarity=-0.132 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
..|..+..++.+.|++++|+..+++.....+.+..+|..+..+|...|++++|+..|++..+... -+...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 34444444445555555555555544444444445555555555555555555555555444321 13344444444455
Q ss_pred HcCCHHHH
Q 009470 299 RCGQITRA 306 (534)
Q Consensus 299 ~~g~~~~A 306 (534)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=7.9e-07 Score=73.76 Aligned_cols=97 Identities=11% Similarity=-0.041 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|++.|++.....+.+...+..+..+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444445555555555555555555554432 234444555555555555555555555555444444455555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009470 263 CRAGNISEAERVFREMKM 280 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~ 280 (534)
...|++++|.+.|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=0.00018 Score=67.46 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHHHc
Q 009470 475 MGHWNNAYKYIREMIEE 491 (534)
Q Consensus 475 ~g~~~~A~~~~~~~~~~ 491 (534)
.|..+++..++.++++.
T Consensus 288 ~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 288 LLYEKETLQYFSTLKAV 304 (331)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh
Confidence 45566677777777663
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.42 E-value=6e-06 Score=69.59 Aligned_cols=99 Identities=9% Similarity=0.046 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 392 ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
...+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..+++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555556666666666666666665543 2255566666666666666666666666666543 3345666666666
Q ss_pred HHhCCCHHHHHHHHHHHHHcC
Q 009470 472 YCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~ 492 (534)
|...|++++|++.|+++++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 666677777777666666643
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=0.00037 Score=65.34 Aligned_cols=130 Identities=6% Similarity=-0.083 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C
Q 009470 166 LAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL----------AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR--R 233 (534)
Q Consensus 166 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~ 233 (534)
+|+++++.+...+ +-+..+|+.--..+...|. +++++++++.+.... +-+..+|+.-.-++.+.| .
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 5666666666655 3344555544433333322 345555555555433 334455555444444444 2
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN-ISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
+++++++++++.+..+.|-.+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555 45555555555554332 4444544443333
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.5e-06 Score=65.82 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..|..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|+..+++.....+.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344455555555555555555555555432 2344555555555555666666666665555544555555666666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009470 264 RAGNISEAERVFREMKM 280 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~ 280 (534)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666665554
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=7.6e-06 Score=65.39 Aligned_cols=94 Identities=12% Similarity=0.004 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
+..+...+.+.|++++|+..|++.....+.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 3344444445555555555555544444444555555555555555555555555555443211 344444455555555
Q ss_pred CCHHHHHHHHHHHHH
Q 009470 301 GQITRAHDVFAEMLE 315 (534)
Q Consensus 301 g~~~~A~~~~~~m~~ 315 (534)
|++++|.+.|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555554443
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1.6e-05 Score=62.04 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344445555555555555555555554432 2244445555555555555555555555554444445555555555555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 009470 264 RAGNISEAERVFREMKMA 281 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~ 281 (534)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 566666666655555543
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=2e-05 Score=61.56 Aligned_cols=104 Identities=14% Similarity=-0.029 Sum_probs=49.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+...|+++.|...++...... +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44444445555555555555555544433 2234445555555555555555555555544432 223444444444555
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVY 255 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~ 255 (534)
..|++++|.+.+++.....+.+...+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 55555555555555444333333333
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=3.5e-06 Score=69.14 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVH 332 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (534)
..+..+...+.+.|++++|...|++....+. .+...|..+..+|.+.|++++|+..|++..... +.+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3344444444445555555555554444321 133444444444445555555555555444443 22333444444445
Q ss_pred HHcCChhHHHHHHHHHHH
Q 009470 333 VKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~ 350 (534)
...|++++|...|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555544443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.37 E-value=7.5e-06 Score=65.70 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE--VEPN----VNTYRI 467 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~----~~~~~~ 467 (534)
.+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.+++..+.. ...+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666667777777766666543 2255666666667777777777777766665421 1111 235666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMV 504 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 504 (534)
+..++...|++++|++.|++.++. .|+..+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHHH
Confidence 777788888888888888888773 4666554433
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=8.5e-06 Score=66.82 Aligned_cols=100 Identities=7% Similarity=-0.110 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34556677788889999999999999988765 3477888889999999999999999999998864 556677888889
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 009470 471 MYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+|...|++++|++.|+++++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998854
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3e-05 Score=76.67 Aligned_cols=197 Identities=11% Similarity=0.057 Sum_probs=111.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC
Q 009470 259 VRGWCRAGNISEAERVFREMKMAGIQPN----------------VYTYSIVIDALCRCGQITRAHDVFAEMLEVG-CEPN 321 (534)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~ 321 (534)
.+.+.+.|++++|++.|.++.+...... ...+..+...|.+.|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567778888888888888877532211 1235667777778888888887777665431 1111
Q ss_pred HH----HHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC
Q 009470 322 SI----TFNNLMRVHVKASRTEKVLQVYNQMKRL----GCEA-DTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GC 388 (534)
Q Consensus 322 ~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 388 (534)
.. ..+.+-..+...|+.+.|..++++.... +..+ -..++..+...|...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222222333456677777777665432 2122 2345566677777777777777777766543 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 389 NP-NASTFNMIFRCISKLGDVNGAHRMYGKMKDL----KCEPN--TVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 389 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
.+ ...++..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1345666666777777777777777665431 11111 23344455555666677777666665543
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=5.3e-06 Score=64.29 Aligned_cols=97 Identities=8% Similarity=-0.029 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP--NVNTYRILIT 470 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p--~~~~~~~li~ 470 (534)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 334444555555555555555555554432 1234445555555555555555555555555432 22 3444555555
Q ss_pred HHHhC-CCHHHHHHHHHHHHHc
Q 009470 471 MYCGM-GHWNNAYKYIREMIEE 491 (534)
Q Consensus 471 ~~~~~-g~~~~A~~~~~~~~~~ 491 (534)
.+.+. |++++|++.++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=2e-05 Score=63.82 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34455555555555555555555555554432 22344455555555555555555555555444444445555555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKM 280 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=2.2e-05 Score=63.50 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILI 469 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li 469 (534)
.+...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788889999999999999999999988765 3367888899999999999999999999988864 45678888899
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009470 470 TMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
.++...|++++|+..|+++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998874
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.6e-05 Score=63.70 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
+.+.|++++|++.|++..+..|.+..+|+.+..+|.+.|++++|++.+++.
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333333333333333333333444444444444444444444333
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.8e-05 Score=66.66 Aligned_cols=98 Identities=8% Similarity=-0.026 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...|..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.....+.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455555566666666666666666665543 234555556666666666666666666665555555566666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009470 263 CRAGNISEAERVFREMKMA 281 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~ 281 (534)
.+.|++++|.+.|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666543
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=9.6e-06 Score=64.78 Aligned_cols=95 Identities=6% Similarity=0.086 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-------HHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPD-------VIVYTN 257 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 257 (534)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.....+.+ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555554432 2234444444555555555555555555443321111 444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+...+.+.|++++|.+.|++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=5.6e-06 Score=64.12 Aligned_cols=27 Identities=19% Similarity=0.017 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 009470 252 VIVYTNLVRGWCRA-GNISEAERVFREM 278 (534)
Q Consensus 252 ~~~~~~li~~~~~~-g~~~~A~~~~~~m 278 (534)
...+..+...+.+. |++++|.+.+++.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33333333333333 3444443333333
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=3.8e-05 Score=75.96 Aligned_cols=197 Identities=11% Similarity=0.054 Sum_probs=121.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCC
Q 009470 294 IDALCRCGQITRAHDVFAEMLEVGCEPN----------------SITFNNLMRVHVKASRTEKVLQVYNQMKRLG-CEAD 356 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~ 356 (534)
...+.+.|++++|++.|..+.+...... ...+..+...|.+.|++++|.+.+.++.+.- ...+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778899999998888887642211 1236667778888888888888887765431 1112
Q ss_pred h----hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CC--
Q 009470 357 T----ITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GCNP-NASTFNMIFRCISKLGDVNGAHRMYGKMKDL--KC-- 423 (534)
Q Consensus 357 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-- 423 (534)
. .+.+.+...+...|++++|..++++.... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12223333344567788888877766542 2222 2456667777778888888888877776432 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 424 EP-NTVTYNILMQMFATSKSTDMVLKLKKEMEEN--EVEPN----VNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 424 ~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+ ...++..+++.|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1345677777777888888888877766532 11111 23455556666677788888777776654
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1.1e-05 Score=64.34 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI--QPN----VYTYSIV 293 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~l 293 (534)
.+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...+++..+... .++ ...+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4455555666666666666666666555555566666666666666666666666666554321 111 4455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 009470 294 IDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
...+.+.|++++|.+.+++..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55566666666666666665554
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.5e-05 Score=63.09 Aligned_cols=110 Identities=10% Similarity=-0.113 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT---VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFS 222 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 222 (534)
.+...+..+...+.+.|+++.|...|++..+... .+ ...|..+...|...|++++|++.+++..+.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666666777777777777777776665531 11 4556666666666666666666666665542 23445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 223 IVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
.+..++...|++++|.+.|++.....+.+...+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 55555666666666666666555444444444433
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=1.2e-05 Score=63.87 Aligned_cols=93 Identities=5% Similarity=-0.163 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 432 ILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 432 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
.+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|+++++.. +.+...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34445555666666666666665542 3345555556666666666666666666666643 22445555566666666
Q ss_pred CCHHHHHHHHHHHHHc
Q 009470 512 GQLQKHEELVEKMVDR 527 (534)
Q Consensus 512 g~~~~a~~~~~~~~~~ 527 (534)
|++++|...++++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666665543
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=3.8e-05 Score=62.91 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD----KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++++|++.+++.....+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34444455555555555555555555554422 33 3444444445555555555555555544433444455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+...+...|++++|.+.|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.18 E-value=1.3e-05 Score=66.69 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CC---CCHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCA-PD----KIAFSIVISILCRKRRASEAQSFFDSLKDK---FE---PDVI 253 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~ 253 (534)
++..+...+...|++++|++.+++..+..-. .+ ..++..+...+...|++++|.+.+++.... .. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555555555555554332100 01 123344444444555555555554443221 00 0123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMA----GIQ-PNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
++..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555555555555555544321 100 01223334444444455555555444443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=1.9e-05 Score=62.73 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=34.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.....+.+...+..+...+.+.|++++|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3334444444444444433321 123333333333444444444444444443333333334444444444444444444
Q ss_pred HHHHHHHH
Q 009470 272 ERVFREMK 279 (534)
Q Consensus 272 ~~~~~~m~ 279 (534)
+..+++..
T Consensus 105 ~~~~~~al 112 (121)
T 1hxi_A 105 LASLRAWL 112 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.7e-05 Score=65.91 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC----HH
Q 009470 429 TYNILMQMFATSKSTDMVLKLKKEMEEN----EVEP-NVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG----SS 499 (534)
Q Consensus 429 ~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 499 (534)
++..+...+...|++++|...+++..+. +-.+ ....+..+...+...|++++|.+.+++.++...-..+ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555566666666666666555431 1000 1334556666777777777777777776643100111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 500 VYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 500 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
.+..+...+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556667777778888888887776653
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=8.3e-05 Score=59.28 Aligned_cols=90 Identities=13% Similarity=-0.037 Sum_probs=39.1
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEITV---DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD---KIAFSIVISIL 228 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~ 228 (534)
...+.+.|++++|...|+.+.+... .+. ..+..+...+.+.|++++|++.|++..+.. +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 3344444555555555554444321 111 344444444455555555555555444332 111 23344444444
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 009470 229 CRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~ 246 (534)
...|++++|...|+++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=2.7e-05 Score=77.67 Aligned_cols=144 Identities=13% Similarity=-0.040 Sum_probs=85.9
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--------------ASTFNMIFRC 401 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~l~~~ 401 (534)
+++++|...|+...+.. +-....|..+...|.+.|++++|...|++..+...... ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444332221 22456677788888888888888888888877532211 3566666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009470 402 ISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNA 481 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 481 (534)
+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|++++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666544 2255666666666666666666666666666542 22344555555566666666555
Q ss_pred H
Q 009470 482 Y 482 (534)
Q Consensus 482 ~ 482 (534)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=0.00016 Score=57.52 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---HHHHHHHHHH
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK---IAFSIVISILCRKRRASEAQSFFDSLKDKFEPD---VIVYTNLVRG 261 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~ 261 (534)
.+...+...|++++|++.|++..+.. +.+. ..+..+..++.+.|++++|...|+++....+.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 35556667777777777777766543 1122 355556666666777777777776665554444 5556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009470 262 WCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~ 281 (534)
+.+.|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66667777777666666654
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=5.4e-06 Score=65.40 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=57.9
Q ss_pred cCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009470 405 LGDVNGAHRMYGKMKDLK--CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAY 482 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 482 (534)
.|++++|+..|++..+.+ -+-+...+..+...|...|++++|...+++..+.. +-+...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777777643 12234566677777777788888888777777653 445667777777777788888888
Q ss_pred HHHHHHHHcC
Q 009470 483 KYIREMIEEK 492 (534)
Q Consensus 483 ~~~~~~~~~~ 492 (534)
..+++.++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8887777753
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=5.1e-05 Score=73.29 Aligned_cols=139 Identities=11% Similarity=0.029 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF 437 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (534)
..+..+...+.+.|++++|...|++..+.- +.. ......+ +..+.. ..+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 445666666667777777777776665420 000 0000011 110011 12456778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 438 ATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKH 517 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 517 (534)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988764 4467788888889999999999999999998854 33566677777777777777776
Q ss_pred HH
Q 009470 518 EE 519 (534)
Q Consensus 518 ~~ 519 (534)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.04 E-value=5.8e-05 Score=63.28 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|+++++. .|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---CCCCH
Confidence 34567778888888899999998888888764 556778888888899999999999999988884 45543
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=7.9e-05 Score=74.31 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD---------------KIAFSIVISILCRKRRASEAQSFFDSLKDKF 248 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 248 (534)
..|..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..+++.....
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 445555555555555555555555554422 111 3555666666666666666666666665555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 249 EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 307 (534)
+.+...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666654211 3345555666666666665554
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=2.4e-05 Score=78.46 Aligned_cols=117 Identities=12% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009470 402 ISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNA 481 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 481 (534)
+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555566666555555442 2245555555666666666666666666655542 33455555566666666666666
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 009470 482 YKYIREMIEEKCLKPGSSVYEMVLQQ--LRRAGQLQKHEELVE 522 (534)
Q Consensus 482 ~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 522 (534)
++.++++++..+ .+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666655431 122233333333 555566666665555
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=1.2e-05 Score=63.36 Aligned_cols=82 Identities=7% Similarity=-0.057 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRN--VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQS 239 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 239 (534)
|++++|...|++..+.+ -+.+...|..+...|...|++++|++.|++..+.. +-+..++..+..++...|++++|++
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444332 11223344444444444444444444444444332 1223334444444444444444444
Q ss_pred HHHHh
Q 009470 240 FFDSL 244 (534)
Q Consensus 240 ~~~~~ 244 (534)
.+++.
T Consensus 83 ~~~~a 87 (117)
T 3k9i_A 83 LLLKI 87 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=6.4e-05 Score=72.58 Aligned_cols=89 Identities=4% Similarity=-0.078 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDAL 297 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (534)
..+|..+..+|.+.|++++|++.+++..+..+.+...|..+..+|...|++++|++.|++..+.... +...+..+...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3455555566666666666666666655555555666666666666666666666666666554211 344555555555
Q ss_pred HHcCCHHHHH
Q 009470 298 CRCGQITRAH 307 (534)
Q Consensus 298 ~~~g~~~~A~ 307 (534)
.+.++.+++.
T Consensus 352 ~~~~~~~~a~ 361 (370)
T 1ihg_A 352 QKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=1.6e-05 Score=79.69 Aligned_cols=118 Identities=10% Similarity=-0.061 Sum_probs=77.1
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 157 LAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASE 236 (534)
Q Consensus 157 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 236 (534)
.+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3456677777777777776664 3456777777777777777777777777777653 3456667777777777777777
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRG--WCRAGNISEAERVFR 276 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 276 (534)
|++.|++..+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777665544455555555555 666777777777776
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.00034 Score=71.48 Aligned_cols=170 Identities=6% Similarity=-0.057 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC--C
Q 009470 200 AEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR----------ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG--N 267 (534)
Q Consensus 200 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~ 267 (534)
++|++.++++.+.. +-+..+|+.--.++...|+ ++++++.++++....+.+..+|+.-.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 45556666555543 2233444444444444444 666666666666656666666666666666666 5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----------
Q 009470 268 ISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG-QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA----------- 335 (534)
Q Consensus 268 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------- 335 (534)
++++++.++++.+.... +..+|+.....+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccccc
Confidence 57777777776665433 5566666665666666 6666777766666654 33566666655555442
Q ss_pred ---CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCh
Q 009470 336 ---SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKL 373 (534)
Q Consensus 336 ---g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 373 (534)
+.++++++.+++..... +-|...|..+...+.+.++.
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 34566777777666654 44566666666666555553
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.0004 Score=70.98 Aligned_cols=175 Identities=5% Similarity=-0.064 Sum_probs=120.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009470 162 RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL----------AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 231 (534)
..-++|++.++.+...+ +-+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|+.-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33456677777777665 3455667666666666666 777777777777654 44566777766666777
Q ss_pred C--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------
Q 009470 232 R--RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG-NISEAERVFREMKMAGIQPNVYTYSIVIDALCRC-------- 300 (534)
Q Consensus 232 g--~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------- 300 (534)
| +++++++.++++.+..+.+..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 7 5677777777777766777777777777777777 777777777777766443 666676666655553
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 009470 301 ------GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK 340 (534)
Q Consensus 301 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (534)
+.++++++.+++.+... +-|...|+..-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998888775 4467788877777766666443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00015 Score=60.62 Aligned_cols=97 Identities=10% Similarity=-0.001 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEY-------GC----------APDKIAFSIVISILCRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 246 (534)
..+......+.+.|++++|++.|++..+. +- +.+...|..+..++.+.|++++|+..+++...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44555666666777777777777666543 00 01123344444444445555555555444444
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 247 KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
..+.+...|..+..+|...|++++|...|++..+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3344444445555555555555555555544444
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.93 E-value=3e-05 Score=74.02 Aligned_cols=149 Identities=12% Similarity=0.046 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009470 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQM 436 (534)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 436 (534)
...+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5667778888889999999999999988753 33321 223333344332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH-HHHcCCH
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQ-LRRAGQL 514 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 514 (534)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|+++++. .|+ ...+..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888753 456788888889999999999999999988874 344 3344444444 2345667
Q ss_pred HHHHHHHHHHHHcC
Q 009470 515 QKHEELVEKMVDRG 528 (534)
Q Consensus 515 ~~a~~~~~~~~~~g 528 (534)
+++..++.+|....
T Consensus 316 ~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 316 QKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhCCC
Confidence 78888888887653
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.90 E-value=0.0002 Score=58.94 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP------NT-----VTYNILMQMFATSKSTDMVLKLKKEMEEN-----E 457 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~ 457 (534)
.+......+.+.|++++|++.|++..+..... +. ..|..+..++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666665542110 11 14444444455555555555555444442 0
Q ss_pred CCCC-HHHH----HHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 458 VEPN-VNTY----RILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 458 ~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+.|+ ...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1222 2233 4444444444444444444444444
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=0.00056 Score=55.46 Aligned_cols=111 Identities=10% Similarity=-0.014 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 009470 371 GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMV 446 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 446 (534)
+++++|.+.|++..+.|. +... +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 355666666666666552 2222 4455555555666666666666543 45555555555555 5566666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 492 (534)
.+++++..+.| +...+..|...|.. .+++++|+++|++..+.+
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666554 34455555555555 556666666666665543
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=0.00035 Score=57.45 Aligned_cols=94 Identities=17% Similarity=0.039 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc---
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD--------K-----IAFSIVISILCRKRRASEAQSFFDSLKDK--- 247 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--- 247 (534)
..+......+.+.|++++|++.|++..+.. |+ . ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 344555666667777777777777766542 22 1 14444444444444444444444443332
Q ss_pred ----CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 248 ----FEPDVIVY----TNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 248 ----~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
.+.+...| .....++...|++++|+..|++..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334444 444555555555555555555443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.001 Score=53.83 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK----LGDVNGAH 412 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 412 (534)
++++|.++|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444444444444443 12211 3333444444444444444444442 33444444444444 44444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~ 457 (534)
++|++..+.| +...+..|...|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 4444444432 33444444444444 444444444444444443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.78 E-value=0.00011 Score=57.28 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 410 GAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 410 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
.|.+.|++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666544 2356677777777777777777777777777653 4456677777777777788888888777776
Q ss_pred Hc
Q 009470 490 EE 491 (534)
Q Consensus 490 ~~ 491 (534)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=0.00011 Score=70.17 Aligned_cols=147 Identities=10% Similarity=-0.016 Sum_probs=67.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+.+.|+++.|...|++..... ++.. .+...|+.+++...+. ...|..+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45555666666777777777776655542 1111 0111222222221110 125666777777
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA-LCRCGQITRAHD 308 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~ 308 (534)
+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666667777777777777778888887777777653211 23334444333 233456667777
Q ss_pred HHHHHHHc
Q 009470 309 VFAEMLEV 316 (534)
Q Consensus 309 ~~~~m~~~ 316 (534)
.|..|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77777654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00018 Score=71.88 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=77.1
Q ss_pred HHhcCChhHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHH
Q 009470 402 ISKLGDVNGAHRMYGKMKDL---KCEP----NTVTYNILMQMFATSKSTDMVLKLKKEMEEN-----E-VEP-NVNTYRI 467 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~-~~p-~~~~~~~ 467 (534)
+...|++++|+.++++..+. -..+ ...+++.|...|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777766431 1111 2345677777777777877777777765431 2 112 2356777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC--CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEEK--CLKPGS----SVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
|...|...|++++|..+++++++.. -+-|+. .+...+..++...|.+++|+.++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888887777765411 011222 23344555666777788888888777663
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00015 Score=72.27 Aligned_cols=123 Identities=14% Similarity=-0.015 Sum_probs=63.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcC---CC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----C--CCCChhhHHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVG---CE---P-NSITFNNLMRVHVKASRTEKVLQVYNQMKRL-----G--CEADTITYNF 362 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~---~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~ 362 (534)
+...|++++|+.++++..+.. +. | ...+++.+..+|...|++++|..++++..+. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777776655421 11 1 2345666666677777777776666655432 1 1111344555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRK-----GCN-PN-ASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
|...|...|++++|..++++..+. |.. |+ ..+.+.+..++...+.+++|+.+|.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666554431 211 11 1223344444445555555555555554
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=7.6e-05 Score=57.62 Aligned_cols=92 Identities=12% Similarity=-0.052 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-------KIA 220 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~~ 220 (534)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|++.+++..+.. |+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 4456666667777777777777777766654 3456667777777777777777777777766542 33 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFD 242 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~ 242 (534)
+..+..++...|+.+.|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 4444444444444444443333
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00045 Score=53.78 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
+|...+++..+.. +.+...+..+...|...|++++|++.++++++.. +.+...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888887764 5578889999999999999999999999999965 456778899999999999999999999998
Q ss_pred HHc
Q 009470 525 VDR 527 (534)
Q Consensus 525 ~~~ 527 (534)
++.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=4.8e-05 Score=58.79 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
..|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.+++.....+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 445555555566666666666666555432 23445555555555555555555555555544433
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00095 Score=49.01 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 427 TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|++.++++++.. +.+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 4556667777777888888888887777653 4456677777788888888888888888887753 334555666665
Q ss_pred HHHHc
Q 009470 507 QLRRA 511 (534)
Q Consensus 507 ~~~~~ 511 (534)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00083 Score=49.36 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLV 259 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 259 (534)
+..+...+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|.+.+++.....+.+...+..+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3334444444444444444444443322 122333333444444444444444444443333333333333333
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=0.00019 Score=58.98 Aligned_cols=111 Identities=8% Similarity=0.065 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS----------TDMVLKLKKEMEENEVEPNVNTYRILITMYCGM- 475 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~- 475 (534)
.+++|.+.+++..+.. +-+...|..+..++...++ +++|+..+++..+.. +-+...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 3444444444444433 1244444444444444433 456777777766643 33456666777777655
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 476 ----------GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 476 ----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
|++++|++.|+++++ +.|+...|...+... ++|.+++-.+...|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~~~------~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 148 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHH------HhCHhccCcccccc
Confidence 489999999999998 568877766555433 34555555444443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.48 E-value=0.00047 Score=52.25 Aligned_cols=64 Identities=23% Similarity=0.231 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+...+..+...|...|++++|+..+++..+.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666667777777777777777766643 33455666677777777777777777776665
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.35 E-value=0.0014 Score=49.49 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+-+...+..+...|.+.|++++|++.|+++++.. +.+...|..+..+|...|++++|.+.+++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3467788899999999999999999999999975 345678999999999999999999999998764
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.28 E-value=0.00073 Score=55.42 Aligned_cols=83 Identities=12% Similarity=-0.013 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN----------ISEAERVFREMKMAGIQPNVYTYSIVIDALCRC-- 300 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-- 300 (534)
.+++|.+.++...+..+.+...|+.+..++...++ +++|+..|++.++.... +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcc
Confidence 34444444444444344444444444444444433 33555555555543222 344455555555544
Q ss_pred ---------CCHHHHHHHHHHHHHc
Q 009470 301 ---------GQITRAHDVFAEMLEV 316 (534)
Q Consensus 301 ---------g~~~~A~~~~~~m~~~ 316 (534)
|++++|++.|++.++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 3566666666666555
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.28 E-value=0.0076 Score=64.63 Aligned_cols=153 Identities=9% Similarity=0.008 Sum_probs=91.9
Q ss_pred HHHHccCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009470 156 NLAGKVRQFDLAWH-FIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234 (534)
Q Consensus 156 ~~~~~~~~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 234 (534)
......++++.|.+ ++..+. +......++..+.+.|.+++|+++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445678888766 442211 02234677777888888888887653211 112344567888
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 235 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
++|.++.+.+. +...|..+...+.+.|+++.|++.|.++.+ |..+...|...|+.+...++.+...
T Consensus 669 ~~A~~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 669 TLARDLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 88888765543 567888888888888888888888887752 3344555555666666555555544
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 315 EVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
..|. ++....+|.+.|++++|.+++.
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 4431 2223334445555555555443
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.18 E-value=0.022 Score=61.07 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD 370 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 370 (534)
..++..+.+.|..++|+++.++.. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555555666666554442111 0012234456666665554322 2445566666666666
Q ss_pred CChHHHHHHHHHH
Q 009470 371 GKLEDAIKVLNSM 383 (534)
Q Consensus 371 g~~~~A~~~~~~m 383 (534)
|+++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666666666554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.03 E-value=0.016 Score=54.51 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 009470 424 EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYE 502 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 502 (534)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 4577788887777777799999999999998864 7877787888888899999999999999988 457777654
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.89 E-value=0.022 Score=53.69 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009470 248 FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITF 325 (534)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 325 (534)
.+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 35566666666666666677777777777776654 56666666666666777777777777766665 3444444
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.73 E-value=0.0052 Score=60.18 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=57.3
Q ss_pred hcCChhHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 009470 404 KLGDVNGAHRMYGKMKDL---KCEPN----TVTYNILMQMFATSKSTDMVLKLKKEMEEN-----E-VEPN-VNTYRILI 469 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~-~~p~-~~~~~~li 469 (534)
..|++++|+.++++..+. -..|+ ..+++.|..+|...|++++|..++++..+- | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567778888887776541 11122 356777777788888888888877776431 2 1222 34577777
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 009470 470 TMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~ 490 (534)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777788888888887777776
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.0057 Score=45.67 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRME 210 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (534)
.|..+...|...|++++|++.|++..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333334444444444443333
No 215
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.22 Score=41.39 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=72.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
-++...+.|+++.|+++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 345566788999998887765 2457888899998899999888888887754 3355556666777
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
.+...++-+....+. -++.....+.-.|+++++.++|.+.
T Consensus 76 ~e~L~kla~iA~~~g-----~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE-----DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHTT-----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc-----cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 776665544433221 2455556666778888887777543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.015 Score=43.29 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVI-VYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.+.|++++|.+.|++..+..+.+.. .|..+..++...|++++|.+.|++..+
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444333333333 444444444444444444444444443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.44 E-value=0.0083 Score=58.74 Aligned_cols=62 Identities=6% Similarity=-0.069 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 288 YTYSIVIDALCRCGQITRAHDVFAEMLEV-----G-CEPN-SITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 288 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
.+++.|...|...|++++|+.++++.++. | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34555555555555555555555554321 1 0111 2345555555555555555555555443
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.43 E-value=0.42 Score=43.20 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChh
Q 009470 339 EKVLQVYNQMKRLGCEAD---TITYNFLIDCHCKD-----GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL-GDVN 409 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~ 409 (534)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4566666666665 344 55677777777773 78888888888877765332366666677777764 7778
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHH
Q 009470 410 GAHRMYGKMKDLKCE--PNTVTYNIL 433 (534)
Q Consensus 410 ~A~~~~~~m~~~~~~--p~~~~~~~l 433 (534)
++.+.+++....... |+....+.+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888877776555 555444433
No 219
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.43 E-value=1.3 Score=47.23 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~ 246 (534)
|..+++++.+.++.+.+.++|+.+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566677778888888888888653
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.38 E-value=0.021 Score=55.98 Aligned_cols=90 Identities=7% Similarity=0.028 Sum_probs=53.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHH
Q 009470 261 GWCRAGNISEAERVFREMKMAG---IQPN----VYTYSIVIDALCRCGQITRAHDVFAEMLEV-----G-CEP-NSITFN 326 (534)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~-~~~-~~~~~~ 326 (534)
.+.+.|++++|+.++++..+.. ..++ ..+++.+...|...|++++|+.++++.++. | -.| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777665421 1111 345666777777777777777777665432 2 112 234566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
.+...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777777777777777766543
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.34 E-value=0.031 Score=54.72 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHhhcc----CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDK----FE----PDVIVYTNLVRGWCRAGNISEAERVFREMKMA-----GI-QPN-VYTYS 291 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~ 291 (534)
.+.+.|++++|+.++++..+. +. ....+++.++..|...|++++|+.++++..+. |. .|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666654321 11 12345666667777777777777766665431 21 122 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
.|...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777777777777777766543
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.31 E-value=0.043 Score=40.55 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 424 EPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+.|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3567777788887765544 689999999988864 5567778888888899999999999999998864
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.31 E-value=0.046 Score=44.25 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHH
Q 009470 408 VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK---STDMVLKLKKEMEENEVEP--NVNTYRILITMYCGMGHWNNAY 482 (534)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 482 (534)
...+.+.|.+..+.+. ++..+...+..++++.+ ++++++.++++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666776666554 67778778888888877 6668888888887764 24 3455556666788999999999
Q ss_pred HHHHHHHHcCCCCCCHH
Q 009470 483 KYIREMIEEKCLKPGSS 499 (534)
Q Consensus 483 ~~~~~~~~~~~~~p~~~ 499 (534)
++++.+++ +.|+..
T Consensus 92 ~y~~~lL~---ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQ---TEPQNN 105 (152)
T ss_dssp HHHHHHHH---HCTTCH
T ss_pred HHHHHHHh---cCCCCH
Confidence 99999988 457553
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.21 E-value=0.09 Score=38.76 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 390 PNASTFNMIFRCISKLGD---VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN 456 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 456 (534)
.+...+..+..++...++ .++|..++++..+... -+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666777776654444 5788888888877652 36677777777788888888888888888775
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.14 E-value=0.34 Score=37.82 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 462 VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
....+..+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.++|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455555566666666666666654332 245666666666666666666666666666666654
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.11 E-value=0.35 Score=37.74 Aligned_cols=137 Identities=12% Similarity=0.090 Sum_probs=65.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 195 RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERV 274 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (534)
-.|..++..++..+.... -+..-||-+|--....-+-+...+.++.+-.-+.- ...|++......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s~C~NlKrVi~C 83 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVVEC 83 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------HhhhcHHHHHHH
Confidence 345566666666665542 24445555555555555555555555554432211 122333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 275 FREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
+-.+- .+.......++.+...|+-++-.+++.++... .+|+....-.+..+|.+.|+..++.+++.+..+.|
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 22221 12233344445555555555555555554322 14455555555555556666655655555555555
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.18 Score=41.87 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 307 (534)
....|+++.|.++.+.+. +...|..|.....+.|+++-|++.|.+..+ +..+.-.|.-.|+.+...
T Consensus 15 AL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 345566666666655542 455566666666666666666666655532 233333444555555554
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
++-+.....| . ++.....+.-.|+++++.++|.
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444333 1 2333334444555555555553
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.79 E-value=0.1 Score=39.36 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN------VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
++..+..+...+.+.|+++.|...|+...+.. -......+..+..++.+.|++++|+..+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444555555555555555554443320 012234444444444444444444444444443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.73 E-value=0.12 Score=38.93 Aligned_cols=66 Identities=11% Similarity=-0.020 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENE------VEPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+..-+..+...+.+.|+++.|...+++..+.. -......+..+..++.+.|++++|+.+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445566666777777777777776665420 1234567777888888888888888888888773
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.51 E-value=2.4 Score=45.09 Aligned_cols=152 Identities=9% Similarity=0.048 Sum_probs=64.8
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH--HHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCC
Q 009470 332 HVKASRTEKVLQVYNQMKRLGCEADTITYNFLI--DCHCKDGKLEDAIKVLNSMVRKGCNPNASTF--NMIFRCISKLGD 407 (534)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~ 407 (534)
++..|+.+....++..+.+. .+..+...+. -++...|+.+.+..+++.+.... .|....- .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 33445555555555555442 1222222222 23335566666666666655431 1111111 122334555566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHH
Q 009470 408 VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHW-NNAYKYIR 486 (534)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 486 (534)
.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|++.+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 555555666655421 1122222222233344455555555555444432 23222222222233333332 45555555
Q ss_pred HHH
Q 009470 487 EMI 489 (534)
Q Consensus 487 ~~~ 489 (534)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 231
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.40 E-value=1.7 Score=40.25 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF----NRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~l 224 (534)
..|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++- +-+.+.++++|......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~---------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS---------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4677777778888999988887654 233445556665555543 444566777887777777
Q ss_pred HHHHHhcCCHH--------HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 225 ISILCRKRRAS--------EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVF 275 (534)
Q Consensus 225 l~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (534)
+..+.....-+ +|+++-.+....-..|......+...|.+.+++.+|+..|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 76665543211 1222211111112346667777777777777777777666
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.24 E-value=0.16 Score=41.08 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 249 EPDVIVYTNLVRGWCRAG---NISEAERVFREMKMAGIQP--NVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 249 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
+++..+...+.-++++.+ ++++++.++++..+.+ .| ....+..+.-+|.+.|++++|.+.++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345555555555555555 3445555555555432 12 2333334444555555555555555555554
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.20 E-value=0.33 Score=43.87 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCC
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD-GKLEDAIKVLNSMVRKGC 388 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~ 388 (534)
|+.++|.+.|++..+.+-.-+..++......++.. |+.++|.+.+++......
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 45555555555554442111244444444444442 555555555555554433
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.95 E-value=0.7 Score=36.94 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHcCCCCChh-hHHHHHHH------HHHcCChHHHHHHHHHHHHCC
Q 009470 321 NSITFNNLMRVHVKASRT------EKVLQVYNQMKRLGCEADTI-TYNFLIDC------HCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 321 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~g~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~m~~~~ 387 (534)
|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .+...|.. +...+++++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555666 5666666666553 233321 11111111 122356666777776665542
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 009470 388 CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCE 424 (534)
Q Consensus 388 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 424 (534)
-+. ...|....+.-.+.|++..|.+++.+....+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 555555566666667777777777766665544
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.42 E-value=0.47 Score=37.95 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
..++.++|.++|+.+.+.+-.- ...|-...+.-.+.|+.+.|.+++.+.+..+ .-+...+...+..+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~--~k~~~~le~a~~nl 138 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG--AVPLEMLEIALRNL 138 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC--CCcHHHHHHHHHhh
Confidence 3478888888888886542222 6677777777778888888888888888865 22344444444443
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.40 E-value=0.0032 Score=60.68 Aligned_cols=347 Identities=12% Similarity=0.161 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
++..|..+|....+.|.+++-...+...++....+ ..=+.|+-+|++.|+..+-.+.+ -.|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 44567777777778888888777776555543222 33356777777777754433322 2355555566666
Q ss_pred HHHhcCCHHHHHHHHHHhhc---------------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 227 ILCRKRRASEAQSFFDSLKD---------------------KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~---------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
-|...|.++.|.-+|..+.. +-..++.||..+-.+|...+.+.-|.-.--.++-. +
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 77777777777666654421 01236778888888999888887765554444321 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CC------CCChh
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL-GC------EADTI 358 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~------~~~~~ 358 (534)
| -...++..|-+.|.+++.+.+++.-.... ......|+.|.-.|++- +.++..+-++..-.+ ++ .....
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 12235566888899999888888776432 34566777777666654 455555544433221 11 12456
Q ss_pred hHHHHHHHHHHcCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHHh---------------cCChhH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVL-------------NSMVRKGCNPNASTFNMIFRCISK---------------LGDVNG 410 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~~~~~~~~~~~~l~~~~~~---------------~g~~~~ 410 (534)
.|.-++-.|++-.+++.|.... .++..+ ..+...|...+..|.. .=|...
T Consensus 306 LW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~R 383 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTR 383 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTT
T ss_pred hHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHH
Confidence 6888888888888888765432 111111 2355555555554443 334444
Q ss_pred HHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHH------------HHHHHHHHCCCCCCHHHHHHH
Q 009470 411 AHRMYGKMKDL----------KCEPNTVTYNILMQMFATSKSTDMVL------------KLKKEMEENEVEPNVNTYRIL 468 (534)
Q Consensus 411 A~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~a~------------~l~~~m~~~~~~p~~~~~~~l 468 (534)
+.++|++.-.. .-..+...=.++-+.|....+++.-. .+-+++.++ .-...-..-
T Consensus 384 vV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIA 460 (624)
T 3lvg_A 384 AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIA 460 (624)
T ss_dssp THHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHH
Confidence 45554432110 00112333345555666666665432 233333332 122333334
Q ss_pred HHHHHhCCCHHHHHHHH------HHHHHcCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 469 ITMYCGMGHWNNAYKYI------REMIEEKCLKPGSSVYEMVLQQLRRAGQL 514 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~------~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 514 (534)
...|.++++|++++.+. +++++.....-+......|++.+...|+.
T Consensus 461 A~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv~~g~~ 512 (624)
T 3lvg_A 461 AYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKR 512 (624)
T ss_dssp HHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCST
T ss_pred HHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCch
Confidence 44667777888776543 33333222233444455555555555543
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.94 E-value=0.7 Score=35.86 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=58.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHH
Q 009470 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM---VLKLKKEMEENEVEP--NVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~ 480 (534)
..+..+.+.|.+....|. ++..+--.+..++.+.++... ++.+++++...+ .| .....-.+.-++.+.|+|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555666665555443 567776677777777776655 777777776653 22 23344455667888999999
Q ss_pred HHHHHHHHHHcCCCCCCH
Q 009470 481 AYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 481 A~~~~~~~~~~~~~~p~~ 498 (534)
|.++++.+++. .|+.
T Consensus 93 A~~~~~~lL~~---eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQT---EPQN 107 (126)
T ss_dssp HHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHh---CCCC
Confidence 99999988884 5654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.83 Score=47.59 Aligned_cols=130 Identities=10% Similarity=0.077 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc------CCCC-CH-
Q 009470 149 DLYHEMINLAGKVRQ-FDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEY------GCAP-DK- 218 (534)
Q Consensus 149 ~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~~-~~- 218 (534)
.....++..+...++ .+.|..+|+++.+.....+......++..+.+.+ +--+|++++.+..+. ..++ +.
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 455666677776666 5889999999988753333322333333333333 233556655554321 1111 11
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 219 ---------IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 219 ---------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
..+..=...+...|+++.|+++-++...-.|.+-.+|..|+.+|.+.|+++.|+-.++-+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122222445667899999999999988878888999999999999999999999888876
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.33 E-value=4.8 Score=36.91 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA----FNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~l 224 (534)
..|..+..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-+.+.+++++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~---------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ---------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4677777778888888888887754 23344556666655554 4445566778887777777
Q ss_pred HHHHHhcCC--------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 225 ISILCRKRR--------ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFR 276 (534)
Q Consensus 225 l~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 276 (534)
+..+..... .++|+++-.+....-..|+.....+...|.+.|++.+|+..|-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 766654321 1122222222211123477888888888888888888877664
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.04 E-value=3.1 Score=46.25 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
+......+..+|...|++++|.+.|.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444445556666666666666666543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.59 Score=48.67 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 471 MYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
.|...|+++-|+++-++++... +-+..+|..|..+|...|+++.|+-.++-+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3444555555555555555532 333455555555555555555555555443
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.77 E-value=5.8 Score=36.36 Aligned_cols=179 Identities=9% Similarity=0.049 Sum_probs=92.9
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 307 (534)
-...|++-+|.+.++. +..=|.+.+++++|++++..-.. .+.+.|+...|-
T Consensus 23 ~I~~G~yYEAhQ~~Rt--------------l~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRT--------------IANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGT 73 (312)
T ss_dssp HHHHTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHH
T ss_pred HhhccChHHHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHH
Confidence 3455666666665443 33446666777777766544321 233445544444
Q ss_pred HH----HHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHH----HcC--CCCChhhHHHHHHHHHHcCChHHH
Q 009470 308 DV----FAEMLEVGCEPNSITFNNLMRVHVKASRTE-KVLQVYNQMK----RLG--CEADTITYNFLIDCHCKDGKLEDA 376 (534)
Q Consensus 308 ~~----~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A 376 (534)
++ ++-..+.+.+++......++..+......+ .-.++++++. +.| -.-|+.....+...|.+.|++.+|
T Consensus 74 DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 74 DLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 43 333444566666666666666554432211 1122333332 222 124667788888888999999888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 377 IKVLNSMVRKGCNPNASTFNMIFRCISKL---GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEM 453 (534)
Q Consensus 377 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 453 (534)
...|-.-. .-+...+..++.-+.+. |...++ |...-..++. |.-.|+...|..+++..
T Consensus 154 ~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 154 ERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHH
T ss_pred HHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHH
Confidence 87765211 11344444444433332 332221 1122222333 44568888888888776
Q ss_pred H
Q 009470 454 E 454 (534)
Q Consensus 454 ~ 454 (534)
.
T Consensus 215 ~ 215 (312)
T 2wpv_A 215 L 215 (312)
T ss_dssp H
T ss_pred H
Confidence 4
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.73 E-value=2 Score=47.72 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK 247 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 247 (534)
.++..+.+.|.++-+.++.... +-+....-.+..++...|++++|.+.|++...+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~ 871 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV 871 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 3555566667766665544332 335554456677888999999999999986543
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.50 E-value=0.7 Score=35.86 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|.-++.+.|++++|.+.++.+.+.
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444555555555555544443
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.27 E-value=0.69 Score=33.93 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
.-+..+.++.+....+.|++.+....+++|-+.+++..|.++|+.++.+......+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 34555566666666667777777777777777777777777777776655444445555443
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.57 E-value=11 Score=36.78 Aligned_cols=51 Identities=4% Similarity=0.087 Sum_probs=35.9
Q ss_pred cCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 161 VRQFDLAWHFIDLMKSR-----NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
.|+++.|.+.+-.+.+. +..-+......++..|...|+++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 36788888777655532 2334567788888888888888888777766643
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.18 E-value=0.81 Score=43.92 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCCHHHHHH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE----EKCLKPGSSVYEM 503 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~~ 503 (534)
.+...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ +-|+.|...+-..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 344556677777888888888777776653 56777888888888888888888888877543 2247777765443
Q ss_pred H
Q 009470 504 V 504 (534)
Q Consensus 504 l 504 (534)
.
T Consensus 251 ~ 251 (388)
T 2ff4_A 251 N 251 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.02 E-value=12 Score=36.40 Aligned_cols=173 Identities=8% Similarity=0.113 Sum_probs=85.9
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHH--HHHHHHHHH--c
Q 009470 141 RPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYV----RAGLAAEA--VHAFNRMEE--Y 212 (534)
Q Consensus 141 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~A--~~~~~~m~~--~ 212 (534)
......+......++..+.+.|+++...+.+..+.+.... .......+++.+. .....+.. +.+.+.+.. .
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte 127 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTE 127 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSS
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Confidence 3445667889999999999999999998888766554211 2233334443322 22222211 111111110 0
Q ss_pred C-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 009470 213 G-CAP---DKIAFSIVISILCRKRRASEAQSFFDSLKDK-FEP-D----VIVYTNLVRGWCRAGNISEAERVFREMKM-- 280 (534)
Q Consensus 213 g-~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 280 (534)
| +-. .......|...+...|++.+|.+++..+... ... + ...+...++.|...+++..|..++.++..
T Consensus 128 ~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 128 NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 1 000 1112234555666666666666666665321 100 1 23445555666666666666666655431
Q ss_pred --CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 281 --AGIQPN--VYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 281 --~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
....|+ ...|...+..+...+++.+|.+.|.+..
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111111 1233444455555666666655555443
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.57 E-value=1.1 Score=43.00 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 009470 255 YTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE-----VGCEPNSITFN 326 (534)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 326 (534)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445566666777777776666665542 33566677777777777777777777666532 36666665543
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.60 E-value=2.3 Score=33.07 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009470 201 EAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLV 259 (534)
Q Consensus 201 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 259 (534)
+..+.++.+....+.|++.+....+++|-+.+++..|.++|+-++.+..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34455555555556666666666666666666666666666666655444444455444
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.33 E-value=20 Score=36.42 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=16.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 009470 505 LQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 505 ~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
+..+...|....|...+..+.+
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCChhhHHHHHHHHHh
Confidence 4567788988888888877665
No 252
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.25 E-value=7.8e-06 Score=78.28 Aligned_cols=262 Identities=12% Similarity=0.123 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
..|..|..+..+.++..+|++-|-+.. |+..|..++....+.|.+++-.+++...++..- +...=+.|+-+|+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 345556666666665555554332221 455566666666666666666666655544322 2222335666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHH
Q 009470 299 RCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIK 378 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 378 (534)
+.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.+
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHH
Confidence 6666554333221 24444445555666666666666555543322 2334444556666665544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 379 VLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEV 458 (534)
Q Consensus 379 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 458 (534)
.-++ .-++.||..+-.+|...+++.-|.-.--.++-. +| -...++..|-..|.+++.+.+++.-....
T Consensus 192 aArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 192 GARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp TTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 3222 136678888888999988888776655444421 11 12346677888999999999998877543
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
.....+|+-|.-.|++- +.++-++.++..-.+ .| .-.++++|.+..-|.++.-++..
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr----iN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSR----VN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS----SC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh----cc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 55677888888878775 556666655543322 11 22478899998888888776654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.47 E-value=1.7 Score=35.39 Aligned_cols=27 Identities=7% Similarity=-0.036 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 498 SSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
.+.-..+..+|.+.|++++|..+++.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 345555778889999999999988765
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.27 E-value=6.7 Score=30.56 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 423 CEPNTVTYNILMQMFATSKST---DMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 423 ~~p~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
-.|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCCH
Confidence 356666666677777776654 45777777777654212345555666688888888888888888887 456654
Q ss_pred H
Q 009470 500 V 500 (534)
Q Consensus 500 ~ 500 (534)
-
T Consensus 113 Q 113 (134)
T 3o48_A 113 Q 113 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.93 E-value=6.3 Score=28.94 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|+++|+-...+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344555666666666677777777777777777777777777777766654 233445665554
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.34 E-value=8.9 Score=34.05 Aligned_cols=55 Identities=11% Similarity=-0.074 Sum_probs=39.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 157 LAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY 212 (534)
Q Consensus 157 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (534)
.+.+.|++++|+.....-.+.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456777777777777666665 567777777888888888888887777766653
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.25 E-value=12 Score=29.50 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 424 EPNTVTYNILMQMFATSKST---DMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
.|+..+--.+..++.+..+. .+++.+++++...+..-.....-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCCCcH
Confidence 56777766777777777654 46777888777643222334445556688899999999999999888 457653
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.94 E-value=36 Score=34.62 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=52.8
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 009470 140 ARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI 219 (534)
Q Consensus 140 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 219 (534)
+.++.+.....-+.-+..+++.+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+.
T Consensus 64 ~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~ 137 (618)
T 1qsa_A 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPN 137 (618)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCT
T ss_pred HCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcH
Confidence 3444444445556667777777777766654432 24455555566667777788777777666665444 33445
Q ss_pred HHHHHHHHHHhcCCH
Q 009470 220 AFSIVISILCRKRRA 234 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~ 234 (534)
.+..++..+.+.|.+
T Consensus 138 ~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 138 ACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCC
Confidence 556666666554443
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.51 E-value=21 Score=31.64 Aligned_cols=113 Identities=7% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCC
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN----VNTYRILITMYCGMG 476 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g 476 (534)
...+.|++++|++....-++.. +-|...-..|++.+|-.|+++.|.+-++...+. .|+ ...|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 4567788888888777776654 347777777888888888888888887777664 333 2344444443
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHc
Q 009470 477 HWNNAYKYIREMIEEKCLKP-----GSSVYEMVLQQL--RRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~p-----~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 527 (534)
+.+++-+=.|+-.| .......++.++ ...|+.++|.++-..+.+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11222222222222 234455566655 4458888888888877654
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.47 E-value=9.9 Score=29.61 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
.-+..+-++.+....+.|+.......+++|.+.+++..|+++|+-...+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33455666666667788888888888888888888888888888777664 344556766654
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.38 E-value=9.1 Score=29.82 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 251 DVIVYTNLVRGWCRAGN---ISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
+..+--.++-++++..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+.+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33333334444444433 2334444544444331112333334444555555555555555555544
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.11 E-value=9.5 Score=31.06 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEY-GCAPDK-------IAFSIVISILCRKRRASEAQSFFDS 243 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~ 243 (534)
-+..+...|.++.|+-+.+.+... +..++. .++..+.+++...|++.+|...|++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344455555666555555544321 111221 1334444455555555555555554
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.71 E-value=18 Score=28.62 Aligned_cols=67 Identities=7% Similarity=0.065 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 250 PDVIVYTNLVRGWCRAGN---ISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
++..+--.+.-++++..+ ..+++.+++++...+..-.......|.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444443 2344455555544322212233334444555555555555555555554
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.54 E-value=12 Score=27.38 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
+...|++++|..+.+.+ +.||...|..|.. .+.|..+++...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34444444444443322 2344444433322 24444444444444444333
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.78 E-value=35 Score=31.47 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLK 450 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~ 450 (534)
|+.....+...|.+.+++.+|...+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555555666666666666655544
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.45 E-value=16 Score=30.88 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH
Q 009470 440 SKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 440 ~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 498 (534)
.+...++..+|..|..+|+--. ...|......+...|++.+|.++|+..++.+ -.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~-A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN-CRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CccHH
Confidence 4456788889998888765443 4567777788888899999999999888876 55643
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.42 E-value=19 Score=34.75 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCChhh--HHHH
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEV--GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL---GCEADTIT--YNFL 363 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~--~~~l 363 (534)
..+...|.+.|++++|.+.+.++... +..--...+-.+++.+...+++..+...+.++... +-.++... ...-
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 33444444555555555555444432 11112334444455555555555555555544321 11111110 0001
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
+..+...+++.+|...|-+....
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhcc
Confidence 11223456677777666665443
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.98 E-value=11 Score=27.56 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=26.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
.+...|+|++|..+.+.+. .||...|-++.. .+.|-.+++...+..+...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3455666666665544332 555555554443 24555555555555555444
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.24 E-value=12 Score=27.41 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
+...|++++|..+.+.+ +.||...|-.|.. .+.|..+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 44444444444443322 2344444433322 24444444444444444443
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.66 E-value=18 Score=34.96 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRK--GCNPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
+...+...|.+.|++++|.+.+.++... +..--...+..+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5666777777777777777777777654 222234556666667777777777777776654
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.71 E-value=11 Score=27.58 Aligned_cols=51 Identities=10% Similarity=-0.038 Sum_probs=26.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
.+...|+|++|..+.+.+. .||...|-++.. .+.|-.+++...+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445566666655444332 555555554433 35555555555555555444
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.17 E-value=28 Score=32.53 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCC
Q 009470 360 YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGD--VNGAHRMYGKMKDLKCE 424 (534)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~ 424 (534)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 345666677777777777777777532111 12333344444443322 34455666666655544
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.09 E-value=25 Score=29.58 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009470 336 SRTEKVLQVYNQMKRLGCEAD-TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 390 (534)
+...++.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335577777777776665443 4456666666777777777777777777766555
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.96 E-value=58 Score=30.88 Aligned_cols=166 Identities=10% Similarity=-0.011 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFE-----PDVIVYTNLVRGWCRA-GNISEAERVFREMKMAGIQPNVYTY- 290 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~- 290 (534)
......+...|.+.|+.++..+++.....-+. ........++..+... +..+.-.++..+..+..-. +-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34556677778888888888888777654211 1233345566666553 3334444444444332100 11122
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCChh
Q 009470 291 -----SIVIDALCRCGQITRAHDVFAEMLEVGCEPN-----SITFNNLMRVHVKASRTEKVLQVYNQMKRL--GCEADTI 358 (534)
Q Consensus 291 -----~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~ 358 (534)
..++..|...|++.+|.+++.++.+.=-..| ...|..-++.|...++..++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2466777777777777777777665310111 223444556677777777777777665432 1223332
Q ss_pred hHHHH----HHHHH-HcCChHHHHHHHHHHH
Q 009470 359 TYNFL----IDCHC-KDGKLEDAIKVLNSMV 384 (534)
Q Consensus 359 ~~~~l----i~~~~-~~g~~~~A~~~~~~m~ 384 (534)
....+ ...+. ..+++.+|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22111 12234 5677777777666654
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.46 E-value=70 Score=29.84 Aligned_cols=66 Identities=14% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 009470 395 FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS--TDMVLKLKKEMEENEVEPN 461 (534)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~ 461 (534)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+...|+-..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 455666777777777777777777531111 12333344444443322 3456666666666654443
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.51 E-value=36 Score=27.21 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC
Q 009470 445 MVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG 497 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 497 (534)
.+..+|..|..+|+--. ...|......+...|++++|.++|+..++.+ -.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~-A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ-AEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CccH
Confidence 37777888877765433 4456666777777888888888888877765 4553
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.22 E-value=49 Score=26.85 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHH
Q 009470 424 EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSV 500 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 500 (534)
.-|......-+..--.. +....+|..|..+|+--. ...|......+-..|++.+|.++|+..++.+ -.|-...
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~-A~P~~~L 133 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK-AEPLERL 133 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBSHHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH
Confidence 44655544444322222 347788999988876544 4567777778888999999999999999876 5675543
No 278
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.77 E-value=81 Score=28.68 Aligned_cols=25 Identities=4% Similarity=-0.089 Sum_probs=15.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMK 175 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~ 175 (534)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455666666677777766666653
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.39 E-value=22 Score=35.03 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhc--cCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKD--KFEPD---VIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
...+|.+++.|...+.++.|..+..+..- ...++ ..-+..+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35578888888889999999998887641 11111 112334567777888899998888887654
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.65 E-value=14 Score=32.73 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=9.0
Q ss_pred HHHHHccCChHHHHHHHH
Q 009470 155 INLAGKVRQFDLAWHFID 172 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~ 172 (534)
+...++.|+.+....+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444455566555444443
No 281
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=62.43 E-value=80 Score=33.90 Aligned_cols=157 Identities=10% Similarity=-0.017 Sum_probs=78.6
Q ss_pred HHHHHHHHccCCh---HHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 152 HEMINLAGKVRQF---DLAWHFIDLMKSR----NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 152 ~~li~~~~~~~~~---~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
..++...++.|.. +.|.+.|+..... .++|+. ...+...-.+.|..++-..+++++... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 3444445555543 4566777665543 133432 333444445667766666666666653 344455667
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDK--FEPDVIVYTNLVRGWCRA-GNISEAERVFREMKM---AGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~ 298 (534)
+.+++-..+.....++++..... +++ .... .++.+.... ...+.|.+.+.+=-+ .........+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRK-QDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCch-hhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 77777777877777777776542 221 1222 223333322 223445554433211 112223334566666666
Q ss_pred HcCCHHHHHHHHHHHHH
Q 009470 299 RCGQITRAHDVFAEMLE 315 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~ 315 (534)
..-.-++-++-++...+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 55444444444555443
No 282
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=62.09 E-value=72 Score=26.96 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCCCC
Q 009470 254 VYTNLVRGWC---RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ-----ITRAHDVFAEMLEVGCEPN 321 (534)
Q Consensus 254 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~A~~~~~~m~~~~~~~~ 321 (534)
...-+|.++. +-.+++.|+-++-+|++.|..|....-..++-+.-.-|. ...|...++.....|.+..
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 3344455544 447788888888888888776666555555555444443 2344444555555554433
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.99 E-value=1.1e+02 Score=29.00 Aligned_cols=167 Identities=7% Similarity=0.020 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHhhccCCCCHHHH--
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEY-GCAPD---KIAFSIVISILCRK-RRASEAQSFFDSLKDKFEPDVIVY-- 255 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~---~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~-- 255 (534)
......|...|.+.|+.++..+++...+.. +.-+. ......++..+... +..+.-.++..+..+-...+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999887642 11222 23355677777654 333433444333221101111222
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHH
Q 009470 256 ----TNLVRGWCRAGNISEAERVFREMKMAGIQPN-----VYTYSIVIDALCRCGQITRAHDVFAEMLEV--GCEPNSIT 324 (534)
Q Consensus 256 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~ 324 (534)
.-++..|...|++.+|.+++.++.+.=-..| ...|-.-+..|...|++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3688999999999999999999876411112 334556678888999999999999887543 22233332
Q ss_pred HH--HHH--HHHH-HcCChhHHHHHHHHHH
Q 009470 325 FN--NLM--RVHV-KASRTEKVLQVYNQMK 349 (534)
Q Consensus 325 ~~--~li--~~~~-~~g~~~~a~~~~~~~~ 349 (534)
.. ... ..+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22 222 2345 6889999988887654
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.27 E-value=77 Score=26.40 Aligned_cols=91 Identities=7% Similarity=-0.024 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+..+-...+.++.+.|+.+ +...+..+.+ .++...-...+.++...|..+ +...+..+.+ .++..+-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444455555555432 2222223322 244444444555555555433 2333333332 334444455555
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 009470 471 MYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~ 490 (534)
++.+.|. .++...+.++.+
T Consensus 166 aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCc-hhHHHHHHHHHh
Confidence 5555554 445555555554
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.88 E-value=74 Score=25.77 Aligned_cols=50 Identities=8% Similarity=0.123 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 009470 167 AWHFIDLMKSRNVEI-TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP 216 (534)
Q Consensus 167 A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 216 (534)
+.++|..|...++.. -...|......+-..|++.+|.++|+.-.+.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444455555444332 23344444445555555555555555555444444
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.48 E-value=72 Score=25.47 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=62.3
Q ss_pred hcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 120 CGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLA 199 (534)
Q Consensus 120 ~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 199 (534)
......+|++--+++..|+.+.-+ ........++.- +...|.... ....|......-+...-. .
T Consensus 18 ~~y~gdDPL~~w~~YI~W~e~~~P--~g~~~l~~lLEr---------c~~~f~~~~--~YknD~RyLklWl~ya~~---~ 81 (152)
T 4a1g_A 18 QSYKGNDPLGEWERYIQWVEENFP--ENKEYLITLLEH---------LMKEFLDKK--KYHNDPRFISYCLKFAEY---N 81 (152)
T ss_dssp TSCCSSCHHHHHHHHHHHHHTTCS--SCTHHHHHHHHH---------HHHHHTTCG--GGTTCHHHHHHHHHHHTT---B
T ss_pred HhCCCCCCHHHHHHHHHHHHHHcC--CCchhHHHHHHH---------HHHHhcccc--cccCCHHHHHHHHHHHHh---c
Confidence 334444566667888999987532 222212222221 122222111 123344333333322211 2
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCC
Q 009470 200 AEAVHAFNRMEEYGCAPD-KIAFSIVISILCRKRRASEAQSFFDSLKD-KFEP 250 (534)
Q Consensus 200 ~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~ 250 (534)
+++.++|..|...|+-.. ...|......+...|++.+|.++|+.-.+ +..|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 347888888887776443 55677777888888889999888887544 3444
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.44 E-value=45 Score=29.01 Aligned_cols=103 Identities=9% Similarity=0.032 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHH
Q 009470 128 LLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR--NVEI----TVDTFSILVRRYVRAGLAAE 201 (534)
Q Consensus 128 ~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~g~~~~ 201 (534)
++..-.-.+|+... ---++.+....+|++|.+++++..+. +.+. ........+..-.....-.-
T Consensus 8 ~~~~~~~~~wl~~~----------~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L 77 (235)
T 2d2s_A 8 MSSTAQRLKFLDEG----------VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAI 77 (235)
T ss_dssp CCHHHHHHHHHHHH----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHcc----------cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHH
Confidence 33445555665532 23467788889999999888876543 1111 00111122222222222222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 202 AVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDS 243 (534)
Q Consensus 202 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 243 (534)
+..+.+.+.. ..+.......+..+.+.|+.++|.++|=+
T Consensus 78 ~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 78 SSKLSQSILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3333333322 33444555555666666666666666544
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.28 E-value=94 Score=26.94 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=42.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEY--GCAP----DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~--g~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
-++.+....++++|++++++..+. +++. +.......+..-+....-.-+..+.+.+.. ..+.......+..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 466778888888888888877532 2221 111122222222222222233333333322 33344444455555
Q ss_pred HhcCCHHHHHHHHHHH
Q 009470 263 CRAGNISEAERVFREM 278 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m 278 (534)
.+.|+-++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 5566666665555443
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.80 E-value=72 Score=27.34 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCC
Q 009470 200 AEAVHAFNRMEEYGCAPD-KIAFSIVISILCRKRRASEAQSFFDSLKD-KFEP 250 (534)
Q Consensus 200 ~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~ 250 (534)
+++.++|..|...|+-.. ...|......+...|++.+|.++|+.-.+ +..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466788888887776443 55677777788888888888888887543 3444
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.47 E-value=1e+02 Score=25.65 Aligned_cols=17 Identities=6% Similarity=-0.164 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHhcCC
Q 009470 217 DKIAFSIVISILCRKRR 233 (534)
Q Consensus 217 ~~~~~~~ll~~~~~~g~ 233 (534)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333344444444443
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.00 E-value=33 Score=29.37 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=9.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 009470 297 LCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~ 317 (534)
.++.|+.+.+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344455554444444444443
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=51.83 E-value=79 Score=29.23 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 009470 222 SIVISILCRKRRASEAQSFFDSLK 245 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~ 245 (534)
..++.-|...|+.++|.+.++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 344555555556665555555553
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.47 E-value=26 Score=29.90 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=6.6
Q ss_pred HHHhcCCHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFF 241 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~ 241 (534)
..+..|+.+-+..++
T Consensus 48 ~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 48 WAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 334445544444333
No 294
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=51.35 E-value=1.7e+02 Score=27.89 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 009470 147 SPDLYHEMINLAGKVRQ---FDLAWHFIDLMKSRN----VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI 219 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 219 (534)
+...-..++...+..|+ .+.|.+.|+.....+ ++|+... .+. +.+ .+..++-..++++.... .+..
T Consensus 196 ~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy-~~~-~~~~~~~~~l~~~y~~s---~~~~ 268 (419)
T 3rjo_A 196 ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVF-AVG-AQSTEGWDFLYSKYQFS---LSST 268 (419)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHH-HHH-TTSHHHHHHHHHHHHHC---CCHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEE-eee-eCCHHHHHHHHHHHhcC---CCHH
Confidence 44556667777777776 456777787765432 4444322 111 111 12233334455555543 4556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHhc-CCHHHHHHHHH----HHHHCCCCCCHHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFE-PDVIVYTNLVRGWCRA-GNISEAERVFR----EMKMAGIQPNVYTYSIV 293 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~-g~~~~A~~~~~----~m~~~g~~p~~~~~~~l 293 (534)
--..++.+++-..+.....++++....... ....... ++.+.... ...+.|.+.+. .+.+. ...+...+..+
T Consensus 269 ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~ 346 (419)
T 3rjo_A 269 EKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHM 346 (419)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHH
Confidence 667788888878888888888877654311 2222222 23333322 22344554443 33332 12233556666
Q ss_pred HHHHHHc
Q 009470 294 IDALCRC 300 (534)
Q Consensus 294 l~~~~~~ 300 (534)
+......
T Consensus 347 i~~~~~~ 353 (419)
T 3rjo_A 347 VMGTTNQ 353 (419)
T ss_dssp HHHTTTT
T ss_pred HHHHhhc
Confidence 6655443
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.49 E-value=39 Score=33.26 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=12.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLM 174 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m 174 (534)
++|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4444555555555555555555443
No 296
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=50.41 E-value=83 Score=26.95 Aligned_cols=50 Identities=2% Similarity=0.022 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 409 NGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE 459 (534)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 459 (534)
+.+..+++.+.+.|...|...-..++......+.+ ....+-.++..+|+.
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 44556666666666654444444555544432111 234555666666664
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.97 E-value=41 Score=28.70 Aligned_cols=85 Identities=13% Similarity=0.209 Sum_probs=38.2
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEITVD--TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIA--FSIVISILCR 230 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~ 230 (534)
+...++.|+.+....+++.+.+.+..++.. .-...+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 344556677777666666555444332211 0112333444556553 3333444454333211 1123333445
Q ss_pred cCCHHHHHHHHHH
Q 009470 231 KRRASEAQSFFDS 243 (534)
Q Consensus 231 ~g~~~~A~~~~~~ 243 (534)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5666555555544
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.94 E-value=31 Score=29.56 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH
Q 009470 444 DMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 444 ~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 498 (534)
+.+..+|..|..+||--. ...|......+...|++.+|.++|+..++.+ -.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~-A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK-AKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CccHH
Confidence 567889999998876544 4567788888889999999999999999876 56643
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.96 E-value=15 Score=30.55 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=7.1
Q ss_pred HccCChHHHHHHHH
Q 009470 159 GKVRQFDLAWHFID 172 (534)
Q Consensus 159 ~~~~~~~~A~~~~~ 172 (534)
+..|+.+....+++
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34555555555543
No 300
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.93 E-value=43 Score=29.37 Aligned_cols=50 Identities=10% Similarity=-0.018 Sum_probs=22.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI---AFSIVISILCRKRRASEAQSFFD 242 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~ 242 (534)
.+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+-+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 344455666665444333 334332211 11233444455666655544443
No 301
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.83 E-value=2e+02 Score=27.73 Aligned_cols=141 Identities=9% Similarity=0.072 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEV--------GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA----DTITYNFLIDCHCK 369 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~----~~~~~~~li~~~~~ 369 (534)
..++...+++..... ++..+......++.. -.|+..+++.+++.+....... ...+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 345666677666553 233455566655554 4678888888887776442100 11222211111111
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 009470 370 DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCI---SKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS---- 442 (534)
Q Consensus 370 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---- 442 (534)
.. ...-+-....|. ++.++ .+.++.+.|+.++.+|.+.|..|....-..+..+.-..|.
T Consensus 244 ~~-------------~~~dk~gd~~yd-~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RS-------------ARFDNKGDRFYD-LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CC-------------CC---CCHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hh-------------hccCCccchHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 00 000001112222 33333 3457888899999999888876655544555555555553
Q ss_pred -HHHHHHHHHHHHHCCC
Q 009470 443 -TDMVLKLKKEMEENEV 458 (534)
Q Consensus 443 -~~~a~~l~~~m~~~~~ 458 (534)
...|...++....-|.
T Consensus 310 a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 2345555566666663
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.61 E-value=94 Score=23.90 Aligned_cols=64 Identities=19% Similarity=0.351 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCC
Q 009470 255 YTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ--ITRAHDVFAEMLEVGCE 319 (534)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~~~~ 319 (534)
.+.++.-|...|+.++|.+.++++..... ........+..++-+.++ .+.+.+++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566667777777777777777642111 112223333333333321 34455666666655543
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.79 E-value=91 Score=28.34 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=11.4
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 009470 153 EMINLAGKVRQFDLAWHFID 172 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~ 172 (534)
..+...++.|+.+....+++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 34444556677766655554
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.38 E-value=1.3e+02 Score=25.20 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=20.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
+-.+.+.|+-++-+|.+.| .|....-..++-+.-.-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3466777777777777766 554444444444444333
No 305
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=45.83 E-value=1.1e+02 Score=24.40 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 009470 339 EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN 389 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 389 (534)
+.+..++..+.+.|+..|...-...+....+.| .....+-.++..+|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 444555555666665544444444555444433 1234555555566553
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.76 E-value=1.7e+02 Score=26.46 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLK 245 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~ 245 (534)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456666777777777777777664
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.52 E-value=1.3e+02 Score=32.46 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHcC
Q 009470 323 ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT----ITYNFLIDCHCKDG 371 (534)
Q Consensus 323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g 371 (534)
.-|.-++..+-+.+.++.+.++-+...+.--..|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36778888899999999988888877764322233 35666777776654
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.15 E-value=88 Score=24.94 Aligned_cols=64 Identities=19% Similarity=0.351 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCC
Q 009470 255 YTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ--ITRAHDVFAEMLEVGCE 319 (534)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~~~~ 319 (534)
.+.++.-|...|+.++|.+.++++..... ........+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566667777777777777777642111 112223333333333222 33455556566555433
No 309
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=43.70 E-value=37 Score=22.52 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRA 196 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 196 (534)
.++.+++.+++..-.++++..+++..+.| ..+...|-.-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45667777777777777877887777777 45667776666666554
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=43.51 E-value=2.3e+02 Score=27.25 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 009470 266 GNISEAERVFREMKMAGIQ 284 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~ 284 (534)
++.+.|+.++.+|.+.|..
T Consensus 269 sd~daAl~~la~ml~~Ged 287 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGD 287 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4444444444444444443
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.49 E-value=1.5e+02 Score=24.77 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=22.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
+-.+.+.|+-++-+|++.|..|....-..++-+.-.-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44677777777777777776655554444444443333
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.72 E-value=1e+02 Score=29.77 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009470 141 RPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIA 220 (534)
Q Consensus 141 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 220 (534)
+.+++-..+.|..-.+.+...|++++|-++--..+. |+--+..|.+.+-..=...|+..-.+.+|..+.+.| +.+..-
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~E 431 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYE 431 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHH
Confidence 556777788888888888889999998877765443 333455565555444444566666677777776665 455544
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFDS 243 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~ 243 (534)
--.+++.....|+.+-.++++.+
T Consensus 432 SlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 432 SLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHhHHHHhccHHHHHHHHHhc
Confidence 44555555566666655555543
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=40.20 E-value=1.8e+02 Score=28.16 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=52.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 161 VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSF 240 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 240 (534)
..+.+.|.++..+ .|.+--...|..-...+...|++++|.++-..-.+ |+-.+..|.+.+-..=..-|+..-.+.+
T Consensus 342 l~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 3666666554433 45544456666667777777777777776554432 3444555554443333333444444444
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHhcCCHH
Q 009470 241 FDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (534)
|..+.+..+.+..---.+++.-...|+.+
T Consensus 418 F~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~ 446 (494)
T 1bpo_A 418 FGILLDQGQLNKYESLELCRPVLQQGRKQ 446 (494)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccCccchHHhhHHhHHHHhccHHH
Confidence 54444333333322233333333344433
No 314
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=39.96 E-value=1.2e+02 Score=24.77 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 411 AHRMYGKMKDLKCEPNTVTYNILMQMF 437 (534)
Q Consensus 411 A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (534)
+..+++.+.+.|..-|...-..++...
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~ 78 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTM 78 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334444444444443333333333333
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.37 E-value=1.4e+02 Score=23.59 Aligned_cols=60 Identities=12% Similarity=0.172 Sum_probs=32.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 277 EMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34455655333 3334455555555566666777776666555555555555555555553
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.71 E-value=1.5e+02 Score=23.60 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN--ISEAERVFREMKMAGIQ 284 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 284 (534)
..++.-|...|+.++|.+.++++....-....+...+..++-+.++ .+.+.+++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3455555555666666666655542111122333333333333222 33455555555554433
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.52 E-value=1.1e+02 Score=23.91 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=30.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009470 174 MKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR 232 (534)
Q Consensus 174 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 232 (534)
+.+.|.+.+. .-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4445554443 344445555555555566666666665554445555444455555544
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.32 E-value=17 Score=31.93 Aligned_cols=23 Identities=9% Similarity=-0.102 Sum_probs=11.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Q 009470 193 YVRAGLAAEAVHAFNRMEEYGCA 215 (534)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~g~~ 215 (534)
.++.|+.+....+++.+.+.|..
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~ 34 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKR 34 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCC
Confidence 34455555555555544444433
No 319
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.20 E-value=1.7e+02 Score=23.90 Aligned_cols=108 Identities=6% Similarity=-0.025 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILI 469 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li 469 (534)
++..+-...+.++.+.|+.+. ...+..+.. .++...-...+.++.+.++.+ +...+..+.+ .++..+-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 355555555555555555432 222333332 345555455555555555433 3333333332 34555555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 009470 470 TMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR 510 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 510 (534)
.++.+.|. +++...+..+.+. ++..+-...+.++.+
T Consensus 160 ~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 160 DALGEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 66666554 4455556655542 344444444444443
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.07 E-value=57 Score=29.06 Aligned_cols=16 Identities=6% Similarity=0.374 Sum_probs=7.2
Q ss_pred HHHHcCChhHHHHHHH
Q 009470 331 VHVKASRTEKVLQVYN 346 (534)
Q Consensus 331 ~~~~~g~~~~a~~~~~ 346 (534)
..+..|+.+-+..+++
T Consensus 167 ~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 167 ITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH
Confidence 3344555544444443
No 321
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.66 E-value=2e+02 Score=24.15 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=11.9
Q ss_pred cCChHHHHHHHHHHHhCC
Q 009470 161 VRQFDLAWHFIDLMKSRN 178 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~ 178 (534)
-.+.|.|+-++-+|.+.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 356666666666666666
No 322
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.39 E-value=1.5e+02 Score=22.72 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN--ISEAERVFREMKMAGIQ 284 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 284 (534)
..++.-|...|+.++|.+.++++....-....+...+..++-+.++ .+.+.+++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3445555555666666666665542111122333333334433322 24455555555555443
No 323
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.53 E-value=2.7e+02 Score=25.50 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRME 210 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (534)
-...++.-|...|+.++|.+.++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45778888999999999999888774
No 324
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.37 E-value=2.3e+02 Score=24.63 Aligned_cols=122 Identities=14% Similarity=0.101 Sum_probs=53.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009470 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG-DVNGAHRMYGKMKDLKCEPNTVTYNIL 433 (534)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l 433 (534)
++..+-...+.++...|+.+ +...+..+.+. ++..+-...+.++...| +...+...+..+.+ .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 44444444555555554422 33333333332 34444444444444443 12334444444433 2455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 434 MQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+.++.+.|+......+.+.+.+ ++ .-...+.++.+.|. .++...+.++.+
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 6666666654433333333322 22 11233445555555 345555555554
No 325
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=34.13 E-value=1.4e+02 Score=24.47 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=11.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCC
Q 009470 332 HVKASRTEKVLQVYNQMKRLGCEA 355 (534)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~g~~~ 355 (534)
.+..|+.+.-.++.+.+.+.|..+
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCC
Confidence 334444444444555555555443
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.10 E-value=1.8e+02 Score=23.35 Aligned_cols=51 Identities=6% Similarity=0.125 Sum_probs=27.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHH
Q 009470 369 KDGKLEDAIKVLNSMVRKGCNP--NASTFNMIFR-C-----ISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~m~ 419 (534)
..|++-+|.++++++......+ ....|..||+ . ..+.|+...|.+++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3466666666666666554333 3344444444 1 123566666666666554
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.31 E-value=1.2e+02 Score=23.97 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 173 LMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 173 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
.+.+.|...+ ..-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 17 ~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455565433 34455566666666666777777777666555566655555555665553
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.28 E-value=95 Score=24.40 Aligned_cols=57 Identities=7% Similarity=0.064 Sum_probs=27.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009470 174 MKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR 232 (534)
Q Consensus 174 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 232 (534)
+.+.|.+++. .-..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 10 L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444544443 2333444444444 4456666666655554445554444444444444
No 329
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=32.76 E-value=4.8e+02 Score=27.80 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHccCCh---HHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009470 149 DLYHEMINLAGKVRQF---DLAWHFIDLMKSRN----VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAF 221 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 221 (534)
..-..++...|+.|.- +.|.+.|+.....+ ++|+.. ..+. +.+- |..++-..+++...+ ..+..--
T Consensus 681 ~lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr--~~vy-~~~~-g~~~~~~~l~~~y~~---~~~~~ek 753 (897)
T 2xdt_A 681 MLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT--LAVF-AVGA-QSTEGWDFLYSKYQF---SLSSTEK 753 (897)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHH--HHHH-HHHT-TSHHHHHHHHHHHTT---CCCHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchh--hhEE-EEec-CCHHHHHHHHHHHHc---cCCHHHH
Confidence 3444555555655553 45666776655432 233322 1111 1111 555444445555543 2344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhc
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~ 246 (534)
..++.+++-..+.....++++....
T Consensus 754 ~~ll~aL~c~~~~~~l~~~L~~~~~ 778 (897)
T 2xdt_A 754 SQIEFALCRTQNKEKLQWLLDESFK 778 (897)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHhC
Confidence 6677777777777777777776653
No 330
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.63 E-value=3.1e+02 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLK 245 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~ 245 (534)
...++.-|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4456666777777777777777765
No 331
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.21 E-value=1.7e+02 Score=22.90 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=32.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 277 EMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
.+.+.|.+.+.. -..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345556554433 233444444555555666666666665545555555555555555553
No 332
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.15 E-value=4.3e+02 Score=26.99 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=14.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHH
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMK 175 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~ 175 (534)
.+|-.+.++|.+++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 34455566777777766665544
No 333
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.87 E-value=1.1e+02 Score=23.59 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009470 174 MKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR 232 (534)
Q Consensus 174 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 232 (534)
+.+.|.+.+. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4445554443 3344444554444 45566666666666554455555444445555444
No 334
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=31.57 E-value=2.1e+02 Score=23.29 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHcCC
Q 009470 286 NVYTYSIVIDALCRCGQ 302 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~ 302 (534)
+...-...+.++.+.|+
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333334444444443
No 335
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.57 E-value=2.4e+02 Score=23.94 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=9.3
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 009470 227 ILCRKRRASEAQSFFDSLK 245 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~ 245 (534)
.|.+.|.+++|.+++++..
T Consensus 123 VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHS
T ss_pred HHHHhcchHHHHHHHHHHh
Confidence 3444555555555555443
No 336
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.85 E-value=1e+02 Score=27.37 Aligned_cols=188 Identities=6% Similarity=-0.040 Sum_probs=87.2
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcC
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIA--FSIVISILCRKR 232 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g 232 (534)
+...++.|+.+.+..+++. |..++...-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 3444556777666655543 2221111112234444566766543 34444555443211 123344556778
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHDVFA 311 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~ 311 (534)
+.+-+.-+++.-..-...+..-+.+.+...+..|+.+-+. .+.+.|..+ +...-.+.+...+..|+.+-+.-+++
T Consensus 107 ~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp CHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 8777766666522111112222234455566677765443 344444332 21122344555667788776666655
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhh
Q 009470 312 EMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTIT 359 (534)
Q Consensus 312 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 359 (534)
.-...... +..-.+..+...++.|+. ++.+.+.+.|..++...
T Consensus 183 ~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 183 YMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred cCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 43322211 111111123334455554 34455566676665543
No 337
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.35 E-value=2.5e+02 Score=23.73 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=41.4
Q ss_pred HHHHHHHHHHH---ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCCCCHHH
Q 009470 149 DLYHEMINLAG---KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL-----AAEAVHAFNRMEEYGCAPDKIA 220 (534)
Q Consensus 149 ~~~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~~~~~~ 220 (534)
+.+.-+|+++. +-.+.|.|+-++-+|.+.|-.|....-..++.+.-.-|. ...|...++.....|.+-....
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~ 112 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFF 112 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 34444555554 447888999999999888855444444444444433333 3445555666666665444443
Q ss_pred H
Q 009470 221 F 221 (534)
Q Consensus 221 ~ 221 (534)
+
T Consensus 113 L 113 (213)
T 3ctd_A 113 L 113 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 338
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.30 E-value=1.4e+02 Score=25.10 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=10.3
Q ss_pred HHHcCChhHHHHHHHHHHHcC
Q 009470 332 HVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~g 352 (534)
.+..|+.+-+..+++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 344455555544555555444
No 339
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.82 E-value=24 Score=30.88 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=10.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC
Q 009470 297 LCRCGQITRAHDVFAEMLEVGC 318 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~ 318 (534)
.++.|+.+....+++.+.+.|.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCC
Confidence 3445555555555554444443
No 340
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.79 E-value=5.5e+02 Score=27.56 Aligned_cols=108 Identities=9% Similarity=0.016 Sum_probs=71.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------------
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP------------------ 285 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------------ 285 (534)
++..+...|..+-|.++. .-.+.+...-..+.++|...|++++|...|++.- .|+..
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHH----hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCcc
Confidence 556666777777655443 3334455555677788888888888888887653 12110
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcC
Q 009470 286 -----NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS----ITFNNLMRVHVKAS 336 (534)
Q Consensus 286 -----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g 336 (534)
...-|..++..+-+.+.++-+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124788999999999999999999988865322233 35677777776654
No 341
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.76 E-value=1.2e+02 Score=24.48 Aligned_cols=57 Identities=5% Similarity=0.044 Sum_probs=26.5
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC
Q 009470 176 SRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY--GCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 176 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~ 233 (534)
+.|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+.+.|-
T Consensus 26 ~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33444332 3344444444444555555555555544 333444444444445555543
No 342
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.53 E-value=16 Score=31.37 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=12.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 505 LQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 505 ~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
+....+.|+.+-+..+++...+.|+
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHcCcHHHHHHHHHhhhccCc
Confidence 4444566777666666665555444
No 343
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=28.70 E-value=3.1e+02 Score=24.31 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 009470 132 LSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKS 176 (534)
Q Consensus 132 l~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 176 (534)
..++.......+...+++....++.. ..|++..+...++.+..
T Consensus 167 ~~~l~~~~~~~~~~i~~~~l~~l~~~--~~G~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 167 KKRLLEICEKEGVKITEDGLEALIYI--SGGDFRKAINALQGAAA 209 (319)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHT--TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 34444444445556666666555532 25677777766665543
No 344
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.42 E-value=1.5e+02 Score=22.84 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=32.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 009470 278 MKMAGIQPNVYTYSIVIDALCRCG-QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRT 338 (534)
Q Consensus 278 m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 338 (534)
+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445566544432 33444454444 5556777777776665555666655555555555533
No 345
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.18 E-value=1.1e+02 Score=25.83 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=7.4
Q ss_pred HhcCCHHHHHHHHHHH
Q 009470 438 ATSKSTDMVLKLKKEM 453 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~m 453 (534)
+..|+.+-+..+++.-
T Consensus 205 ~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcC
Confidence 3445555444444443
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.64 E-value=1.2e+02 Score=23.96 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=31.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 173 LMKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 173 ~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
.+.+.|...+. .-..++..+...+ ..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 7 ~l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 34445555443 3334444444444 455666666666665544555555555555555553
No 347
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.42 E-value=3.6e+02 Score=25.35 Aligned_cols=58 Identities=9% Similarity=0.116 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKMA-----GIQPN--VYTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~--~~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
......+++.|...|+.++|..++++.... ++.|. ...|......|...+++..+...
T Consensus 127 l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~ 191 (393)
T 4b4t_O 127 LLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYT 191 (393)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344555666777777777777777766531 23222 22344555556666776665543
No 348
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.21 E-value=2.9e+02 Score=23.48 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 009470 339 EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN 389 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 389 (534)
+.+..++..+.+.|+..|...-...+....+.+.+ ....+-.++..+|+.
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 34455566666666554544444555544442211 234455555566653
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.06 E-value=1.3e+02 Score=23.54 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=32.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 277 EMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445566654432 33444444445 55667777777666555566665555565555553
No 350
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.55 E-value=1.7e+02 Score=23.91 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=12.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGCEPN 321 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~ 321 (534)
..+..|+.+.-.++.+.+++.|..++
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444554444455555555554443
No 351
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.24 E-value=2.7e+02 Score=22.79 Aligned_cols=67 Identities=15% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH
Q 009470 436 MFATSKSTDMVLKLKKEMEENEVEPN-----------------VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~~~~~p~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 498 (534)
+|-+.+++..|+..++.+.+-.+.-| ...|+.+...|.+.|+.+||++.+..--. ..|=-
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~---~~~lf 147 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG---KSFLF 147 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC---Ccccc
Q ss_pred HHHHHHH
Q 009470 499 SVYEMVL 505 (534)
Q Consensus 499 ~~~~~l~ 505 (534)
.+...++
T Consensus 148 ~~vEnli 154 (242)
T 3kae_A 148 SPVENLL 154 (242)
T ss_dssp HHHHHHH
T ss_pred chHHHHH
No 352
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.22 E-value=2.9e+02 Score=23.10 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=12.3
Q ss_pred cCChHHHHHHHHHHHhCCCC
Q 009470 161 VRQFDLAWHFIDLMKSRNVE 180 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~~~ 180 (534)
-.+.|.|+-++-+|.+.|-.
T Consensus 20 GSDpDAAly~LaRMl~~GED 39 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGD 39 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 35666666666666666543
No 353
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.13 E-value=6.2e+02 Score=26.98 Aligned_cols=159 Identities=6% Similarity=-0.025 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCh---hHHHHHHHHHHHcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 326 NNLMRVHVKASRT---EKVLQVYNQMKRLG----CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMI 398 (534)
Q Consensus 326 ~~li~~~~~~g~~---~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 398 (534)
..++...|+.|.. +.|.+.|+.....+ +.||. -..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4466777888865 46777887766532 34443 2333333456687777777777777652 45556778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHH
Q 009470 399 FRCISKLGDVNGAHRMYGKMKDLK-CEPNTVTYNILMQMFATSK-STDMVLKLKKEMEE---NEVEPNVNTYRILITMYC 473 (534)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~---~~~~p~~~~~~~li~~~~ 473 (534)
+.+++...+.+...++++...... +++. .... ++.+..... ..+.|.+.+.+=-+ ..+..+...+..+|....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888888888888776533 3322 2222 233333322 23344444433111 112233345677777777
Q ss_pred hCCCHHHHHHHHHHHHHc
Q 009470 474 GMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~ 491 (534)
..-.-++-++-+++..+.
T Consensus 843 ~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TTCCSHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHhh
Confidence 665556666666666554
No 354
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.92 E-value=2.4e+02 Score=31.54 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEP-NVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELV 521 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 521 (534)
.++..+.|.++.+- +.+ |.......+..-.+.|++..|++++.+++++. |....|..++..+...|. +......
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k---~~~~~~~~~~~~~~~l~w-~h~~~~~ 1339 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK---RTRDHFVELAAINGALGH-EHIRTVI 1339 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHSC-HHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 33445566666542 122 33333333334446899999999999999864 788999999988888775 4555555
Q ss_pred HHHHHc
Q 009470 522 EKMVDR 527 (534)
Q Consensus 522 ~~~~~~ 527 (534)
+++.-.
T Consensus 1340 ~~~~~~ 1345 (1354)
T 3lxu_X 1340 NRMMIT 1345 (1354)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 555443
No 355
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.97 E-value=1.3e+02 Score=21.52 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
.+.-....+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3444556667777777776555443
No 356
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.94 E-value=2.7e+02 Score=22.36 Aligned_cols=50 Identities=6% Similarity=-0.107 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHHcCCHHHHHHHHHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRNVEI--TVDTFSILVR------RYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~~~~--~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~ 211 (534)
|++=+|-++++.+=.....+ ....|..||+ ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777766554334 3455666666 22356777777777777643
No 357
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=24.93 E-value=6.7e+02 Score=26.97 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009470 147 SPDLYHEMINLAGKVRQ---FDLAWHFIDLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAF 221 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 221 (534)
+...-..++...|+.|. .+.|.+.|+.....+.. +....-.. +-+.+ .+..++-..++++..+. .+..--
T Consensus 747 ~~~lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~-Vyc~~-~~~~~~~~~l~~~y~~s---~~~~ek 821 (967)
T 3se6_A 747 DRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKI-VYSVG-AQTTAGWNYLLEQYELS---MSSAEQ 821 (967)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHH-HHHHH-TTSHHHHHHHHHHHHHC---SCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhhH-hHhhh-hccHHHHHHHHHHHhcc---CCHHHH
Confidence 44555566666666665 45677777776654221 22222222 22222 22333333445555442 345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHH----HHHHCCCCCCHHHHHHHHH
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKF-EPDVIVYTNLVRGWCRAG-NISEAERVFR----EMKMAGIQPNVYTYSIVID 295 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~~g-~~~~A~~~~~----~m~~~g~~p~~~~~~~ll~ 295 (534)
..++.+++-..+.....++++...... -....... ++.+..... ..+.|.+.+. .+.+. ...+...+..++.
T Consensus 822 ~~ll~aL~ct~d~~ll~~~L~~~l~~~~i~~qd~~~-~~~~v~~n~~g~~~~w~f~~~nw~~i~~~-~~~~~~~~~~~i~ 899 (967)
T 3se6_A 822 NKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAA-LLHAIARRPKGQQLAWDFVRENWTHLLKK-FDLGSYDIRMIIS 899 (967)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhCcCcCcHhHHHH-HHHHHHcChhHHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHH
Confidence 677888887888888777777765431 11222222 333333332 2344444443 33332 2234445666665
Q ss_pred HHHH
Q 009470 296 ALCR 299 (534)
Q Consensus 296 ~~~~ 299 (534)
....
T Consensus 900 ~~~~ 903 (967)
T 3se6_A 900 GTTA 903 (967)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 5443
No 358
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.15 E-value=1.7e+02 Score=23.11 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=34.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 009470 277 EMKMAGIQPNVYTYSIVIDALCRCG-QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRT 338 (534)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 338 (534)
.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3555666655433 23444444444 4556777777777666555666666666666665543
No 359
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.03 E-value=1.4e+02 Score=22.35 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEE-NEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
.+++|..-+++..+. ..|......+++.+... ++.++++.+...+ .|+ ...++.-.+....+.|-+++. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 567778777777654 45666666777665432 4556666665544 455 345566667777777766555 455
Q ss_pred HHHHH
Q 009470 486 REMIE 490 (534)
Q Consensus 486 ~~~~~ 490 (534)
..|++
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 360
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.55 E-value=8.1e+02 Score=27.44 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009470 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (534)
.+...+.|.++.+.--..|.......+......+++..|++++.++.+. ++....|..++..+...| ++......++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 4455667777766532233333333334445788999999999999876 367888888877766554 5555555555
Q ss_pred HH
Q 009470 418 MK 419 (534)
Q Consensus 418 m~ 419 (534)
+.
T Consensus 1342 ~~ 1343 (1354)
T 3lxu_X 1342 MM 1343 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 361
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.49 E-value=1.6e+02 Score=24.68 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=8.6
Q ss_pred HHHhcCCHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDS 243 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~ 243 (534)
..++.|+.+....+++.
T Consensus 12 ~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 12 NLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34445555555555544
No 362
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.39 E-value=64 Score=26.46 Aligned_cols=14 Identities=7% Similarity=0.342 Sum_probs=6.2
Q ss_pred HhcCCHHHHHHHHH
Q 009470 229 CRKRRASEAQSFFD 242 (534)
Q Consensus 229 ~~~g~~~~A~~~~~ 242 (534)
+..|+.+....+++
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34444444444443
No 363
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=23.37 E-value=1.5e+02 Score=21.04 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
++.|+.++++++.++..+...|...+..+.
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 456777777777777667777776665544
No 364
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.15 E-value=1.3e+02 Score=28.60 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=8.1
Q ss_pred HHHHHccCChHHHHHHHH
Q 009470 155 INLAGKVRQFDLAWHFID 172 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~ 172 (534)
+...++.|+.+.+..+++
T Consensus 51 L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 51 LHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344444555544444443
No 365
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.74 E-value=1.7e+02 Score=23.51 Aligned_cols=59 Identities=8% Similarity=0.161 Sum_probs=31.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCh
Q 009470 279 KMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV--GCEPNSITFNNLMRVHVKASRT 338 (534)
Q Consensus 279 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 338 (534)
.+.|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-.
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555443 2334455555555555666666666655 4444555555555555555543
No 366
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.20 E-value=1.9e+02 Score=19.62 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=26.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 278 MKMAGIQPNVYTYSIVIDALCRCG-QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 278 m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544332 23334343332 33445555555555544445555555555555444
No 367
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.14 E-value=3e+02 Score=21.86 Aligned_cols=51 Identities=4% Similarity=0.037 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 408 VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP 460 (534)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 460 (534)
.+.+..+++.+.+.|..-|...-..++......|. ....+-.++..+|+..
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCH
Confidence 45566677777777766555555556665555432 2456667777777653
No 368
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.93 E-value=1.5e+02 Score=19.62 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 465 YRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
++.++..+++..-.++++-.+.++.+.| ..+...|..-++.+.+.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g--~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG--TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 3444555555555666666666666665 34555555555555443
No 369
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.69 E-value=3.3e+02 Score=22.15 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009470 340 KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC 388 (534)
Q Consensus 340 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 388 (534)
.+..++..+.+.|+..|...-...+....+.|.+ ....+-.++..+|+
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI 98 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCC
Confidence 3444555555555544444444444444433322 12344444555554
No 370
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.60 E-value=60 Score=27.60 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=9.1
Q ss_pred HhcCChhHHHHHHHHHHh
Q 009470 403 SKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~ 420 (534)
...|+.+.+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344555555555555443
No 371
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.52 E-value=1.7e+02 Score=24.39 Aligned_cols=19 Identities=16% Similarity=-0.153 Sum_probs=11.1
Q ss_pred HHHHHccCChHHHHHHHHH
Q 009470 155 INLAGKVRQFDLAWHFIDL 173 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~ 173 (534)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445556666666666654
No 372
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.44 E-value=1.2e+02 Score=23.64 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG 197 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 197 (534)
++.+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333344445555555554444444444444444444333
No 373
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=20.29 E-value=6.2e+02 Score=24.87 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=13.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009470 434 MQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~ 455 (534)
|-.++...+.+....+|+.+.+
T Consensus 347 I~~~s~~~d~~~I~~~W~~li~ 368 (525)
T 3i5p_A 347 IFKIADFRDHEVIMAKWDELFQ 368 (525)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHH
Confidence 3344556667777777777655
No 374
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.23 E-value=1.3e+02 Score=23.11 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYV 194 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 194 (534)
+..-.|.++++.+.+.+...+..|.-..+..+.
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 334444444544444433333333333333333
No 375
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.19 E-value=1.4e+02 Score=21.46 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 163 QFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEA 202 (534)
Q Consensus 163 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 202 (534)
..+.|.++++.+..+|. .+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 45666666666666653 3666666666554554433
Done!