Query 009471
Match_columns 534
No_of_seqs 389 out of 2186
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 13:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 3.7E-32 8.1E-37 310.4 42.6 366 155-522 59-526 (2102)
2 KOG4224 Armadillo repeat prote 100.0 1.8E-33 3.9E-38 264.7 23.4 363 153-520 84-453 (550)
3 KOG0166 Karyopherin (importin) 100.0 1.6E-32 3.5E-37 276.1 32.0 357 154-512 109-485 (514)
4 PLN03200 cellulose synthase-in 100.0 1.6E-31 3.4E-36 305.3 39.4 350 155-514 405-765 (2102)
5 KOG0166 Karyopherin (importin) 100.0 1.4E-30 3.1E-35 262.1 32.9 359 155-515 67-438 (514)
6 KOG4224 Armadillo repeat prote 100.0 4.7E-31 1E-35 248.4 23.9 356 155-514 127-494 (550)
7 COG5064 SRP1 Karyopherin (impo 100.0 2.9E-30 6.2E-35 241.2 25.6 361 150-514 67-444 (526)
8 COG5064 SRP1 Karyopherin (impo 100.0 2.8E-30 6E-35 241.3 22.3 357 153-512 113-495 (526)
9 PF05804 KAP: Kinesin-associat 99.9 4.5E-24 9.7E-29 226.9 38.2 353 171-528 266-664 (708)
10 PF05804 KAP: Kinesin-associat 99.9 7.6E-20 1.6E-24 194.8 36.1 364 152-524 121-531 (708)
11 KOG4199 Uncharacterized conser 99.9 7.2E-19 1.6E-23 165.0 28.3 313 164-482 117-456 (461)
12 KOG1048 Neural adherens juncti 99.9 2.6E-19 5.5E-24 186.3 27.1 359 152-513 231-684 (717)
13 KOG1048 Neural adherens juncti 99.8 9.8E-18 2.1E-22 174.6 25.0 330 198-530 235-662 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 4.9E-15 1.1E-19 156.4 37.3 349 159-514 43-421 (503)
15 KOG4199 Uncharacterized conser 99.7 3.1E-14 6.6E-19 134.1 31.8 314 194-514 102-445 (461)
16 KOG2122 Beta-catenin-binding p 99.7 1.4E-15 3E-20 164.6 24.4 351 158-514 201-602 (2195)
17 PF10508 Proteasom_PSMB: Prote 99.7 9.5E-14 2E-18 146.6 36.6 361 152-513 75-465 (503)
18 KOG1222 Kinesin associated pro 99.7 1.8E-14 3.9E-19 141.3 27.6 373 152-529 258-679 (791)
19 KOG2122 Beta-catenin-binding p 99.7 2.2E-15 4.7E-20 163.2 21.9 317 156-472 237-603 (2195)
20 KOG2171 Karyopherin (importin) 99.6 1.2E-13 2.5E-18 149.3 28.2 454 42-514 91-595 (1075)
21 KOG4500 Rho/Rac GTPase guanine 99.6 3.8E-13 8.1E-18 130.7 23.6 319 193-514 84-432 (604)
22 PF04826 Arm_2: Armadillo-like 99.6 3.9E-13 8.4E-18 127.9 21.6 192 192-389 8-205 (254)
23 KOG4500 Rho/Rac GTPase guanine 99.6 9.4E-13 2E-17 127.9 23.3 365 158-523 91-487 (604)
24 PRK09687 putative lyase; Provi 99.5 1.6E-12 3.4E-17 126.5 22.8 253 196-509 23-278 (280)
25 PRK09687 putative lyase; Provi 99.5 7.2E-12 1.6E-16 121.9 24.6 252 155-467 24-279 (280)
26 PRK13800 putative oxidoreducta 99.5 2.8E-11 6E-16 136.9 28.3 273 155-510 622-896 (897)
27 cd00256 VATPase_H VATPase_H, r 99.4 1.1E-10 2.3E-15 118.2 28.9 318 153-471 52-426 (429)
28 KOG1222 Kinesin associated pro 99.4 1E-10 2.2E-15 115.4 27.2 363 106-478 259-672 (791)
29 PF04826 Arm_2: Armadillo-like 99.4 1.1E-11 2.5E-16 117.9 19.1 193 316-514 9-206 (254)
30 KOG1293 Proteins containing ar 99.3 2.8E-10 6.1E-15 116.6 22.6 365 157-522 12-542 (678)
31 PRK13800 putative oxidoreducta 99.3 7.8E-10 1.7E-14 125.2 27.1 246 194-512 619-866 (897)
32 cd00020 ARM Armadillo/beta-cat 99.3 7.9E-11 1.7E-15 99.7 14.2 116 192-307 3-120 (120)
33 cd00020 ARM Armadillo/beta-cat 99.3 8.9E-11 1.9E-15 99.4 14.1 117 232-349 2-120 (120)
34 KOG1789 Endocytosis protein RM 99.2 4.7E-09 1E-13 111.7 26.0 359 170-533 1741-2189(2235)
35 KOG2023 Nuclear transport rece 99.2 4.3E-10 9.3E-15 114.9 17.7 425 10-469 2-504 (885)
36 PF01602 Adaptin_N: Adaptin N 99.2 1.5E-08 3.2E-13 109.1 29.5 320 160-514 10-334 (526)
37 PF01602 Adaptin_N: Adaptin N 99.2 1.8E-09 3.8E-14 116.2 21.4 330 151-514 111-445 (526)
38 KOG0946 ER-Golgi vesicle-tethe 99.2 6.2E-08 1.3E-12 101.3 31.2 361 153-518 21-459 (970)
39 KOG1293 Proteins containing ar 99.2 1E-08 2.2E-13 105.4 24.9 325 154-478 51-541 (678)
40 cd00256 VATPase_H VATPase_H, r 99.1 1.5E-08 3.2E-13 102.9 24.4 272 156-428 103-424 (429)
41 KOG0168 Putative ubiquitin fus 99.1 1.2E-08 2.6E-13 107.2 23.9 251 155-410 168-436 (1051)
42 KOG2759 Vacuolar H+-ATPase V1 99.1 7.5E-08 1.6E-12 94.5 25.5 317 154-471 65-439 (442)
43 PF03224 V-ATPase_H_N: V-ATPas 99.1 4.9E-09 1.1E-13 104.5 17.2 213 158-371 62-292 (312)
44 KOG2171 Karyopherin (importin) 99.1 8.6E-08 1.9E-12 104.7 26.8 349 155-517 119-508 (1075)
45 KOG2023 Nuclear transport rece 99.1 6.4E-08 1.4E-12 99.4 24.2 411 46-514 105-592 (885)
46 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.9E-08 4.2E-13 100.2 18.5 221 197-418 56-303 (312)
47 KOG0946 ER-Golgi vesicle-tethe 99.0 8.7E-07 1.9E-11 92.9 30.1 314 197-514 23-400 (970)
48 KOG3678 SARM protein (with ste 99.0 4E-08 8.6E-13 97.0 19.2 265 191-470 175-452 (832)
49 PTZ00429 beta-adaptin; Provisi 99.0 1E-06 2.2E-11 96.2 32.2 290 155-470 33-326 (746)
50 KOG2160 Armadillo/beta-catenin 98.9 7.2E-08 1.6E-12 93.5 18.8 182 249-430 95-283 (342)
51 PTZ00429 beta-adaptin; Provisi 98.9 2.8E-06 6.1E-11 92.9 33.3 328 153-514 139-472 (746)
52 KOG2160 Armadillo/beta-catenin 98.9 2E-07 4.4E-12 90.4 20.3 184 164-349 93-282 (342)
53 KOG4413 26S proteasome regulat 98.9 3.1E-06 6.6E-11 80.5 26.8 316 196-514 82-440 (524)
54 KOG0168 Putative ubiquitin fus 98.8 9.9E-08 2.1E-12 100.5 16.0 200 318-520 210-420 (1051)
55 KOG2759 Vacuolar H+-ATPase V1 98.8 1.5E-06 3.3E-11 85.5 21.8 271 153-428 113-437 (442)
56 KOG4413 26S proteasome regulat 98.8 4.3E-06 9.3E-11 79.5 23.8 354 155-510 83-481 (524)
57 KOG2973 Uncharacterized conser 98.7 2.4E-06 5.2E-11 80.7 20.5 292 156-473 5-318 (353)
58 KOG2973 Uncharacterized conser 98.7 4.6E-06 9.9E-11 78.9 21.6 260 239-508 5-310 (353)
59 KOG3678 SARM protein (with ste 98.6 4.5E-06 9.7E-11 82.8 18.2 241 271-514 173-453 (832)
60 KOG1241 Karyopherin (importin) 98.5 1.4E-05 3E-10 84.0 21.0 311 198-514 366-712 (859)
61 KOG1242 Protein containing ada 98.5 2.8E-05 6E-10 80.5 22.6 336 155-514 135-484 (569)
62 TIGR02270 conserved hypothetic 98.4 6.9E-05 1.5E-09 76.7 21.8 218 198-480 88-306 (410)
63 KOG4646 Uncharacterized conser 98.4 6.7E-06 1.5E-10 68.3 11.1 131 198-328 18-150 (173)
64 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00019 4.1E-09 72.7 24.2 326 175-516 4-367 (371)
65 TIGR02270 conserved hypothetic 98.3 0.00011 2.4E-09 75.2 22.0 210 156-430 88-297 (410)
66 KOG1241 Karyopherin (importin) 98.3 0.00033 7.2E-09 73.9 24.9 343 163-514 226-627 (859)
67 COG5369 Uncharacterized conser 98.3 3.9E-06 8.4E-11 84.7 9.6 270 190-468 425-739 (743)
68 KOG1062 Vesicle coat complex A 98.3 0.0011 2.4E-08 70.6 27.7 117 148-271 136-268 (866)
69 KOG0212 Uncharacterized conser 98.2 0.00023 5.1E-09 72.6 21.3 314 152-469 82-443 (675)
70 PF05536 Neurochondrin: Neuroc 98.2 0.0001 2.2E-09 78.6 19.3 230 155-389 6-261 (543)
71 KOG1062 Vesicle coat complex A 98.2 0.0014 3.1E-08 69.7 26.8 317 158-514 74-415 (866)
72 KOG1061 Vesicle coat complex A 98.2 0.00015 3.3E-09 76.8 19.0 334 152-514 119-454 (734)
73 KOG1060 Vesicle coat complex A 98.1 0.0016 3.5E-08 69.1 25.8 139 152-306 69-208 (968)
74 KOG0212 Uncharacterized conser 98.1 4.4E-05 9.6E-10 77.7 14.0 312 195-515 83-408 (675)
75 KOG1060 Vesicle coat complex A 98.1 0.0042 9.1E-08 66.1 27.9 280 156-469 37-349 (968)
76 KOG4646 Uncharacterized conser 98.1 2.8E-05 6E-10 64.7 9.4 132 238-370 17-149 (173)
77 PF14664 RICTOR_N: Rapamycin-i 98.1 0.0011 2.4E-08 67.2 23.0 307 154-469 25-363 (371)
78 KOG1059 Vesicle coat complex A 98.1 0.00066 1.4E-08 71.3 21.3 300 152-476 142-496 (877)
79 COG5240 SEC21 Vesicle coat com 98.0 0.0013 2.8E-08 67.5 21.8 295 171-491 244-577 (898)
80 PF05536 Neurochondrin: Neuroc 98.0 0.00058 1.3E-08 72.9 20.0 229 197-428 6-260 (543)
81 KOG1061 Vesicle coat complex A 98.0 0.00025 5.4E-09 75.3 16.7 145 152-309 47-191 (734)
82 KOG1059 Vesicle coat complex A 98.0 0.00071 1.5E-08 71.1 19.7 220 239-480 146-374 (877)
83 COG5215 KAP95 Karyopherin (imp 98.0 0.0025 5.3E-08 65.5 23.0 304 203-514 373-712 (858)
84 COG1413 FOG: HEAT repeat [Ener 98.0 0.003 6.4E-08 63.8 23.8 245 155-469 44-303 (335)
85 KOG1789 Endocytosis protein RM 97.9 0.0026 5.7E-08 69.4 23.3 134 296-430 1743-1884(2235)
86 KOG0213 Splicing factor 3b, su 97.9 0.00077 1.7E-08 70.9 18.6 258 198-473 801-1068(1172)
87 KOG2734 Uncharacterized conser 97.9 0.0065 1.4E-07 60.7 23.8 254 215-469 103-399 (536)
88 PF00514 Arm: Armadillo/beta-c 97.9 2E-05 4.3E-10 52.6 4.3 41 267-307 1-41 (41)
89 KOG1077 Vesicle coat complex A 97.9 0.01 2.3E-07 62.5 25.8 338 152-512 109-487 (938)
90 PF00514 Arm: Armadillo/beta-c 97.9 3E-05 6.5E-10 51.7 5.1 41 185-225 1-41 (41)
91 KOG1242 Protein containing ada 97.8 0.0012 2.6E-08 68.7 18.4 281 148-451 168-463 (569)
92 KOG2259 Uncharacterized conser 97.8 0.0027 5.8E-08 66.3 20.5 281 212-521 174-519 (823)
93 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.00091 2E-08 63.9 15.5 226 245-470 157-428 (432)
94 KOG2734 Uncharacterized conser 97.8 0.0069 1.5E-07 60.5 22.0 255 173-429 103-400 (536)
95 KOG1517 Guanine nucleotide bin 97.8 0.00079 1.7E-08 73.4 16.4 218 213-430 487-733 (1387)
96 KOG1824 TATA-binding protein-i 97.8 0.016 3.6E-07 63.0 25.8 217 284-514 863-1134(1233)
97 PF13646 HEAT_2: HEAT repeats; 97.8 7.1E-05 1.5E-09 59.3 6.4 87 402-509 1-88 (88)
98 KOG0213 Splicing factor 3b, su 97.8 0.0047 1E-07 65.3 20.9 350 153-514 506-913 (1172)
99 KOG1077 Vesicle coat complex A 97.7 0.038 8.3E-07 58.4 26.6 302 156-480 76-407 (938)
100 KOG1517 Guanine nucleotide bin 97.7 0.0012 2.7E-08 72.0 16.4 220 296-517 485-736 (1387)
101 COG1413 FOG: HEAT repeat [Ener 97.7 0.0048 1E-07 62.2 20.4 184 237-469 43-241 (335)
102 PF12348 CLASP_N: CLASP N term 97.7 0.00098 2.1E-08 63.2 14.0 184 164-353 17-210 (228)
103 PF10165 Ric8: Guanine nucleot 97.7 0.0035 7.5E-08 65.5 18.7 271 258-530 2-355 (446)
104 KOG1824 TATA-binding protein-i 97.6 0.0049 1.1E-07 66.8 19.7 334 166-521 621-1044(1233)
105 COG5215 KAP95 Karyopherin (imp 97.6 0.036 7.8E-07 57.3 24.6 350 152-514 37-438 (858)
106 COG5181 HSH155 U2 snRNP splice 97.6 0.0023 4.9E-08 66.2 16.1 260 197-474 605-874 (975)
107 PF13646 HEAT_2: HEAT repeats; 97.6 0.0011 2.3E-08 52.5 11.0 87 239-345 1-88 (88)
108 KOG0211 Protein phosphatase 2A 97.6 0.0051 1.1E-07 67.3 19.2 347 152-514 314-665 (759)
109 PF10165 Ric8: Guanine nucleot 97.5 0.008 1.7E-07 62.8 18.6 253 177-430 4-338 (446)
110 COG5369 Uncharacterized conser 97.4 0.0014 3E-08 66.8 11.7 177 256-433 408-598 (743)
111 KOG2259 Uncharacterized conser 97.4 0.0025 5.4E-08 66.5 12.9 254 199-472 201-513 (823)
112 KOG1058 Vesicle coat complex C 97.4 0.045 9.7E-07 58.4 21.9 315 157-514 23-347 (948)
113 KOG3036 Protein involved in ce 97.3 0.022 4.7E-07 52.8 16.6 141 177-317 101-257 (293)
114 COG5181 HSH155 U2 snRNP splice 97.3 0.0012 2.6E-08 68.2 9.3 257 238-514 605-871 (975)
115 smart00185 ARM Armadillo/beta- 97.2 0.00079 1.7E-08 44.6 5.2 40 268-307 2-41 (41)
116 KOG0915 Uncharacterized conser 97.2 0.077 1.7E-06 60.9 23.1 273 149-430 989-1307(1702)
117 PF08569 Mo25: Mo25-like; Int 97.2 0.015 3.2E-07 58.0 15.6 213 312-526 69-299 (335)
118 PF12348 CLASP_N: CLASP N term 97.2 0.0014 3.1E-08 62.1 8.0 144 158-307 57-206 (228)
119 KOG4151 Myosin assembly protei 97.0 0.011 2.5E-07 63.3 14.0 236 225-466 492-737 (748)
120 KOG0915 Uncharacterized conser 97.0 0.068 1.5E-06 61.3 20.3 346 157-514 821-1266(1702)
121 KOG1078 Vesicle coat complex C 97.0 0.099 2.1E-06 56.1 20.4 297 153-469 204-531 (865)
122 COG5231 VMA13 Vacuolar H+-ATPa 97.0 0.12 2.5E-06 49.9 18.6 226 203-428 156-427 (432)
123 smart00185 ARM Armadillo/beta- 96.9 0.0022 4.8E-08 42.3 5.2 39 187-225 3-41 (41)
124 KOG1058 Vesicle coat complex C 96.9 0.66 1.4E-05 49.9 25.2 319 153-516 133-466 (948)
125 COG5096 Vesicle coat complex, 96.9 0.93 2E-05 49.7 28.0 144 152-308 53-196 (757)
126 KOG1240 Protein kinase contain 96.9 0.074 1.6E-06 59.6 18.9 262 155-430 423-726 (1431)
127 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0016 3.4E-08 46.5 3.9 55 210-264 1-55 (55)
128 PF12460 MMS19_C: RNAPII trans 96.8 0.82 1.8E-05 47.6 25.8 345 157-521 2-402 (415)
129 KOG2274 Predicted importin 9 [ 96.8 0.053 1.1E-06 59.0 16.1 260 249-514 462-739 (1005)
130 KOG0211 Protein phosphatase 2A 96.7 0.29 6.2E-06 54.0 22.0 351 150-514 232-626 (759)
131 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0034 7.4E-08 44.7 4.9 55 292-347 1-55 (55)
132 PF11841 DUF3361: Domain of un 96.7 0.023 4.9E-07 49.7 10.4 137 393-530 4-153 (160)
133 KOG3036 Protein involved in ce 96.6 0.27 5.8E-06 45.8 17.2 154 254-439 96-257 (293)
134 PF12717 Cnd1: non-SMC mitotic 96.6 0.33 7.2E-06 44.0 18.3 91 167-267 1-93 (178)
135 KOG4535 HEAT and armadillo rep 96.6 0.014 3.1E-07 58.9 9.8 294 168-470 269-603 (728)
136 KOG0567 HEAT repeat-containing 96.5 0.31 6.6E-06 46.0 17.3 191 278-510 67-277 (289)
137 PF05004 IFRD: Interferon-rela 96.5 0.083 1.8E-06 52.4 14.6 183 283-469 48-256 (309)
138 KOG0567 HEAT repeat-containing 96.4 0.27 5.8E-06 46.4 16.3 103 336-468 172-278 (289)
139 PF04078 Rcd1: Cell differenti 96.4 0.05 1.1E-06 51.4 11.8 141 177-317 72-228 (262)
140 KOG4151 Myosin assembly protei 96.3 0.042 9.2E-07 59.1 12.0 209 310-526 495-712 (748)
141 KOG1240 Protein kinase contain 96.3 0.26 5.6E-06 55.6 18.2 294 198-514 424-726 (1431)
142 PF09759 Atx10homo_assoc: Spin 96.3 0.023 4.9E-07 45.9 7.7 66 295-360 3-70 (102)
143 PF06025 DUF913: Domain of Unk 96.2 0.47 1E-05 48.4 18.5 125 236-360 105-243 (379)
144 COG5096 Vesicle coat complex, 96.2 0.25 5.4E-06 54.0 17.1 169 163-350 28-196 (757)
145 PF11841 DUF3361: Domain of un 96.2 0.088 1.9E-06 46.1 11.2 119 271-389 4-131 (160)
146 COG5240 SEC21 Vesicle coat com 96.2 0.94 2E-05 47.3 20.1 250 165-430 275-556 (898)
147 KOG1832 HIV-1 Vpr-binding prot 96.1 0.1 2.2E-06 56.6 13.2 343 167-523 366-785 (1516)
148 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.034 7.4E-07 44.7 7.6 89 214-303 4-92 (97)
149 PF13764 E3_UbLigase_R4: E3 ub 96.0 1.6 3.4E-05 48.7 22.8 236 192-431 113-408 (802)
150 PF04063 DUF383: Domain of unk 95.9 0.057 1.2E-06 49.3 9.6 122 248-371 6-156 (192)
151 PF11701 UNC45-central: Myosin 95.9 0.092 2E-06 46.5 10.7 143 321-468 5-157 (157)
152 PF12755 Vac14_Fab1_bd: Vacuol 95.9 0.062 1.3E-06 43.2 8.6 92 171-264 3-94 (97)
153 KOG2062 26S proteasome regulat 95.9 0.96 2.1E-05 48.6 19.1 161 322-505 522-688 (929)
154 PF08569 Mo25: Mo25-like; Int 95.8 0.24 5.3E-06 49.5 14.1 235 273-511 71-333 (335)
155 PF04078 Rcd1: Cell differenti 95.7 0.52 1.1E-05 44.7 14.9 180 335-514 10-219 (262)
156 KOG2611 Neurochondrin/leucine- 95.6 0.95 2E-05 46.3 17.2 130 157-288 14-162 (698)
157 PF05918 API5: Apoptosis inhib 95.6 0.68 1.5E-05 49.1 17.0 122 165-303 33-158 (556)
158 PF11698 V-ATPase_H_C: V-ATPas 95.6 0.042 9E-07 45.6 6.4 74 152-225 41-115 (119)
159 PF05004 IFRD: Interferon-rela 95.6 1.4 3E-05 43.8 18.4 191 150-348 39-256 (309)
160 PF12719 Cnd3: Nuclear condens 95.5 0.93 2E-05 44.8 17.2 170 196-373 26-208 (298)
161 KOG2956 CLIP-associating prote 95.5 0.68 1.5E-05 47.2 15.8 186 154-349 286-477 (516)
162 PF09759 Atx10homo_assoc: Spin 95.5 0.087 1.9E-06 42.5 7.9 65 171-235 3-70 (102)
163 COG5209 RCD1 Uncharacterized p 95.5 0.25 5.3E-06 45.3 11.5 148 170-317 115-278 (315)
164 KOG4653 Uncharacterized conser 95.4 0.39 8.5E-06 52.3 14.6 213 287-511 736-962 (982)
165 PF11698 V-ATPase_H_C: V-ATPas 95.4 0.032 6.8E-07 46.3 5.2 71 400-470 43-115 (119)
166 KOG1943 Beta-tubulin folding c 95.4 6.2 0.00014 44.6 25.2 254 153-428 340-610 (1133)
167 KOG1943 Beta-tubulin folding c 95.4 1.9 4E-05 48.5 19.9 243 196-469 341-610 (1133)
168 PF07814 WAPL: Wings apart-lik 95.1 1.2 2.7E-05 45.3 16.8 269 196-471 21-356 (361)
169 PF12717 Cnd1: non-SMC mitotic 95.1 0.53 1.2E-05 42.6 12.8 90 374-471 2-93 (178)
170 PF04063 DUF383: Domain of unk 95.0 0.25 5.3E-06 45.2 10.2 122 208-329 7-157 (192)
171 KOG3665 ZYG-1-like serine/thre 94.9 3.6 7.7E-05 45.6 20.9 188 260-464 494-691 (699)
172 PRK14707 hypothetical protein; 94.7 14 0.00031 44.9 25.4 334 165-507 301-649 (2710)
173 KOG4535 HEAT and armadillo rep 94.6 0.034 7.4E-07 56.3 3.8 179 209-389 404-603 (728)
174 KOG1248 Uncharacterized conser 94.5 3.4 7.4E-05 47.0 19.1 213 207-429 665-898 (1176)
175 PF11701 UNC45-central: Myosin 94.5 0.18 3.9E-06 44.7 7.8 144 364-511 5-157 (157)
176 PF02985 HEAT: HEAT repeat; I 94.4 0.081 1.8E-06 32.5 3.9 28 198-225 2-29 (31)
177 PRK14707 hypothetical protein; 94.4 17 0.00037 44.4 25.5 326 165-497 133-471 (2710)
178 KOG2274 Predicted importin 9 [ 94.3 3.7 8.1E-05 45.4 18.4 259 167-430 504-781 (1005)
179 PF06025 DUF913: Domain of Unk 94.3 7.3 0.00016 39.9 21.1 101 190-290 99-208 (379)
180 KOG2032 Uncharacterized conser 94.2 3.5 7.7E-05 42.5 17.1 252 206-469 268-530 (533)
181 KOG1078 Vesicle coat complex C 94.2 10 0.00022 41.5 21.3 440 36-514 32-533 (865)
182 KOG2999 Regulator of Rac1, req 94.2 2.4 5.1E-05 44.3 15.9 157 281-438 86-253 (713)
183 PF07814 WAPL: Wings apart-lik 94.2 4.6 9.9E-05 41.1 18.4 268 151-430 18-356 (361)
184 PF08045 CDC14: Cell division 93.9 0.94 2E-05 43.2 11.7 98 415-513 106-207 (257)
185 PF06371 Drf_GBD: Diaphanous G 93.8 0.54 1.2E-05 42.8 9.9 109 155-265 67-186 (187)
186 KOG2611 Neurochondrin/leucine- 93.7 8.7 0.00019 39.6 18.5 181 242-427 16-223 (698)
187 KOG2956 CLIP-associating prote 93.6 6.9 0.00015 40.2 17.6 166 252-428 302-476 (516)
188 KOG1991 Nuclear transport rece 93.4 16 0.00035 41.0 23.8 265 196-469 410-710 (1010)
189 PF13764 E3_UbLigase_R4: E3 ub 93.4 17 0.00036 40.9 23.2 179 232-415 112-334 (802)
190 PF14668 RICTOR_V: Rapamycin-i 93.2 0.37 8.1E-06 36.3 6.3 64 417-480 4-68 (73)
191 PF02985 HEAT: HEAT repeat; I 93.2 0.13 2.9E-06 31.6 3.3 29 401-429 1-29 (31)
192 KOG2999 Regulator of Rac1, req 93.0 6.1 0.00013 41.4 16.3 162 198-360 85-254 (713)
193 PF08045 CDC14: Cell division 92.8 1.5 3.3E-05 41.8 11.3 95 171-265 108-206 (257)
194 KOG1820 Microtubule-associated 92.7 4.1 8.8E-05 45.6 16.1 186 156-349 255-443 (815)
195 PF12719 Cnd3: Nuclear condens 92.6 4.8 0.0001 39.8 15.3 170 154-331 26-209 (298)
196 KOG1248 Uncharacterized conser 92.5 16 0.00035 41.9 20.1 211 249-469 666-897 (1176)
197 PF14668 RICTOR_V: Rapamycin-i 92.0 0.86 1.9E-05 34.4 6.9 65 377-441 4-70 (73)
198 PF11707 Npa1: Ribosome 60S bi 92.0 12 0.00025 37.6 17.4 158 313-472 51-239 (330)
199 PF12460 MMS19_C: RNAPII trans 92.0 4.8 0.0001 41.9 15.0 186 155-353 190-398 (415)
200 KOG4653 Uncharacterized conser 91.7 5.7 0.00012 43.8 15.1 216 243-468 733-962 (982)
201 PF06371 Drf_GBD: Diaphanous G 91.6 1.8 3.8E-05 39.4 10.2 77 271-348 100-186 (187)
202 KOG2025 Chromosome condensatio 91.5 24 0.00052 38.4 20.4 131 210-346 60-190 (892)
203 PF05918 API5: Apoptosis inhib 91.4 23 0.0005 37.9 21.4 168 242-429 28-207 (556)
204 KOG1820 Microtubule-associated 91.2 2.6 5.7E-05 47.1 12.5 179 283-469 258-442 (815)
205 KOG1020 Sister chromatid cohes 91.2 38 0.00083 40.1 23.4 141 196-349 816-960 (1692)
206 KOG2025 Chromosome condensatio 91.1 1.3 2.9E-05 47.4 9.5 111 399-514 84-194 (892)
207 COG5116 RPN2 26S proteasome re 90.9 23 0.00049 37.5 17.7 150 324-496 521-675 (926)
208 PF12031 DUF3518: Domain of un 90.7 1.1 2.4E-05 41.9 7.6 82 376-457 140-232 (257)
209 KOG2933 Uncharacterized conser 90.5 2.9 6.2E-05 40.6 10.3 142 153-305 87-232 (334)
210 KOG1991 Nuclear transport rece 90.4 35 0.00077 38.5 25.6 348 167-527 431-815 (1010)
211 KOG1020 Sister chromatid cohes 90.0 47 0.001 39.5 20.8 142 153-307 815-960 (1692)
212 KOG0414 Chromosome condensatio 90.0 4.5 9.7E-05 46.1 12.8 137 197-349 920-1064(1251)
213 KOG1967 DNA repair/transcripti 89.6 4.4 9.5E-05 45.0 12.1 139 362-507 867-1018(1030)
214 KOG1967 DNA repair/transcripti 89.5 1.3 2.8E-05 48.9 8.1 147 155-301 868-1018(1030)
215 KOG0414 Chromosome condensatio 89.1 3.1 6.7E-05 47.3 10.7 136 280-428 921-1063(1251)
216 KOG2062 26S proteasome regulat 89.0 6.8 0.00015 42.5 12.7 160 283-466 524-690 (929)
217 COG5218 YCG1 Chromosome conden 88.5 4.3 9.4E-05 42.8 10.6 128 373-505 60-191 (885)
218 KOG2137 Protein kinase [Signal 88.5 5.2 0.00011 43.3 11.6 224 167-413 286-521 (700)
219 KOG3665 ZYG-1-like serine/thre 88.2 5 0.00011 44.5 11.9 179 177-372 494-677 (699)
220 KOG1832 HIV-1 Vpr-binding prot 87.7 2 4.4E-05 47.1 8.0 163 269-441 592-785 (1516)
221 PF12031 DUF3518: Domain of un 86.9 1.9 4.2E-05 40.3 6.4 82 211-292 139-230 (257)
222 KOG1566 Conserved protein Mo25 86.6 34 0.00074 33.5 16.6 217 272-493 73-310 (342)
223 PF08167 RIX1: rRNA processing 86.2 6.5 0.00014 35.0 9.5 114 149-266 20-143 (165)
224 COG5209 RCD1 Uncharacterized p 85.6 5.5 0.00012 36.9 8.5 151 255-437 118-276 (315)
225 cd03568 VHS_STAM VHS domain fa 85.3 3.7 7.9E-05 35.7 7.1 71 401-471 38-111 (144)
226 PF08324 PUL: PUL domain; Int 84.8 2.1 4.6E-05 41.5 6.2 159 198-356 65-238 (268)
227 COG5098 Chromosome condensatio 84.7 41 0.0009 36.6 15.4 139 198-351 894-1039(1128)
228 KOG1243 Protein kinase [Genera 84.7 14 0.00031 39.9 12.3 253 159-428 259-514 (690)
229 COG5656 SXM1 Importin, protein 84.7 68 0.0015 35.3 20.0 304 154-471 371-712 (970)
230 KOG1566 Conserved protein Mo25 84.6 43 0.00092 32.9 15.7 211 313-525 73-301 (342)
231 PF12530 DUF3730: Protein of u 84.4 38 0.00082 32.1 16.4 136 199-349 3-151 (234)
232 PF14500 MMS19_N: Dos2-interac 84.4 41 0.00089 32.5 15.3 211 200-429 3-237 (262)
233 KOG1788 Uncharacterized conser 84.4 29 0.00063 39.5 14.6 278 163-451 476-784 (2799)
234 cd03567 VHS_GGA VHS domain fam 84.3 2.3 5.1E-05 36.6 5.4 69 401-469 39-115 (139)
235 PF11865 DUF3385: Domain of un 84.1 12 0.00026 33.1 10.1 145 318-469 9-156 (160)
236 PF10363 DUF2435: Protein of u 83.5 2.7 5.8E-05 33.4 5.1 71 156-228 5-75 (92)
237 PF11865 DUF3385: Domain of un 83.4 7.5 0.00016 34.4 8.5 142 197-348 11-156 (160)
238 PF10363 DUF2435: Protein of u 83.3 3.1 6.8E-05 33.0 5.3 71 281-353 6-76 (92)
239 cd03561 VHS VHS domain family; 83.0 5.2 0.00011 34.2 7.1 71 401-471 38-113 (133)
240 PF14726 RTTN_N: Rotatin, an a 82.4 10 0.00023 30.4 8.0 93 169-261 2-95 (98)
241 PF08167 RIX1: rRNA processing 82.3 13 0.00029 33.0 9.8 109 280-389 27-143 (165)
242 KOG4464 Signaling protein RIC- 81.3 67 0.0014 32.8 20.9 137 152-289 43-198 (532)
243 COG5218 YCG1 Chromosome conden 81.3 54 0.0012 35.0 14.5 102 236-341 90-191 (885)
244 cd03569 VHS_Hrs_Vps27p VHS dom 80.7 6.8 0.00015 33.9 7.0 70 401-470 42-114 (142)
245 cd03569 VHS_Hrs_Vps27p VHS dom 80.1 10 0.00022 32.9 7.9 73 154-226 41-115 (142)
246 KOG1243 Protein kinase [Genera 79.6 23 0.0005 38.4 11.7 186 193-389 327-515 (690)
247 PF12530 DUF3730: Protein of u 79.2 58 0.0013 30.8 18.2 197 240-454 3-216 (234)
248 PF08506 Cse1: Cse1; InterPro 79.0 80 0.0017 32.3 17.2 158 302-465 194-370 (370)
249 PF14225 MOR2-PAG1_C: Cell mor 78.4 67 0.0014 31.0 15.5 161 292-469 76-253 (262)
250 COG5116 RPN2 26S proteasome re 78.3 21 0.00045 37.8 10.5 121 196-332 551-675 (926)
251 PF14500 MMS19_N: Dos2-interac 78.2 68 0.0015 31.0 15.7 211 160-389 5-237 (262)
252 smart00638 LPD_N Lipoprotein N 77.7 96 0.0021 33.8 16.5 131 239-387 395-543 (574)
253 KOG1788 Uncharacterized conser 77.2 69 0.0015 36.7 14.4 269 175-469 663-981 (2799)
254 KOG2137 Protein kinase [Signal 77.1 41 0.0009 36.7 12.7 135 193-332 386-521 (700)
255 cd03561 VHS VHS domain family; 77.1 17 0.00037 31.0 8.4 74 154-227 37-114 (133)
256 PF05659 RPW8: Arabidopsis bro 77.0 5 0.00011 35.0 5.0 76 22-98 14-89 (147)
257 PF01347 Vitellogenin_N: Lipop 76.8 49 0.0011 36.3 14.1 169 318-511 394-587 (618)
258 cd03568 VHS_STAM VHS domain fa 76.5 15 0.00033 31.9 7.9 74 154-227 37-112 (144)
259 smart00288 VHS Domain present 76.4 15 0.00033 31.4 7.8 74 153-226 36-112 (133)
260 PF14726 RTTN_N: Rotatin, an a 75.1 18 0.00039 29.1 7.3 69 398-466 28-96 (98)
261 KOG2032 Uncharacterized conser 75.0 1.1E+02 0.0025 32.0 20.2 151 236-389 253-415 (533)
262 smart00288 VHS Domain present 74.8 13 0.00028 31.8 6.9 70 401-470 38-111 (133)
263 PF01347 Vitellogenin_N: Lipop 74.2 51 0.0011 36.2 13.4 189 197-418 396-611 (618)
264 KOG1992 Nuclear export recepto 74.1 93 0.002 34.7 14.3 241 171-429 264-527 (960)
265 PF08324 PUL: PUL domain; Int 74.0 14 0.0003 35.7 8.0 149 364-514 65-232 (268)
266 COG5656 SXM1 Importin, protein 73.9 1.5E+02 0.0032 32.8 21.2 316 152-474 406-761 (970)
267 cd03567 VHS_GGA VHS domain fam 72.3 27 0.00058 30.1 8.3 73 154-226 38-117 (139)
268 KOG0413 Uncharacterized conser 72.1 1.9E+02 0.0041 33.2 18.2 107 155-265 577-684 (1529)
269 smart00638 LPD_N Lipoprotein N 72.0 1.5E+02 0.0033 32.1 18.4 204 197-427 312-543 (574)
270 PF08506 Cse1: Cse1; InterPro 71.6 1.2E+02 0.0027 30.9 17.9 127 294-424 227-370 (370)
271 PF14225 MOR2-PAG1_C: Cell mor 70.6 1.1E+02 0.0023 29.7 17.8 217 154-387 7-252 (262)
272 PLN03076 ARF guanine nucleotid 70.2 2.9E+02 0.0062 34.5 20.4 141 201-347 1142-1297(1780)
273 PF13251 DUF4042: Domain of un 70.0 60 0.0013 29.4 10.4 137 170-308 2-175 (182)
274 PF11707 Npa1: Ribosome 60S bi 70.0 1.2E+02 0.0027 30.3 16.9 156 155-310 57-240 (330)
275 PF08389 Xpo1: Exportin 1-like 69.9 35 0.00075 29.2 8.8 126 252-384 3-148 (148)
276 KOG0301 Phospholipase A2-activ 69.5 1.4E+02 0.0029 32.6 14.0 160 208-373 556-727 (745)
277 PF13251 DUF4042: Domain of un 69.3 89 0.0019 28.3 12.7 138 212-351 2-176 (182)
278 PF00790 VHS: VHS domain; Int 68.5 13 0.00028 32.1 5.7 69 401-469 43-117 (140)
279 PF00790 VHS: VHS domain; Int 68.4 28 0.0006 30.0 7.7 75 153-227 41-120 (140)
280 KOG0301 Phospholipase A2-activ 68.1 1.9E+02 0.0041 31.6 16.0 161 166-331 556-728 (745)
281 KOG2933 Uncharacterized conser 66.7 54 0.0012 32.1 9.7 136 281-428 91-233 (334)
282 KOG4464 Signaling protein RIC- 64.7 56 0.0012 33.3 9.6 151 364-514 47-232 (532)
283 PF10521 DUF2454: Protein of u 64.4 60 0.0013 31.7 10.1 69 238-306 120-202 (282)
284 KOG1992 Nuclear export recepto 64.1 1.3E+02 0.0027 33.7 12.8 204 253-474 309-531 (960)
285 COG5098 Chromosome condensatio 63.0 35 0.00075 37.1 8.3 137 281-430 895-1038(1128)
286 PF10521 DUF2454: Protein of u 62.4 81 0.0017 30.8 10.6 69 197-265 120-202 (282)
287 PF12830 Nipped-B_C: Sister ch 61.1 1.3E+02 0.0028 27.3 14.2 124 197-330 9-141 (187)
288 PF10274 ParcG: Parkin co-regu 60.4 1.3E+02 0.0029 27.2 10.9 76 152-228 36-112 (183)
289 PF14631 FancD2: Fanconi anaem 59.9 1.6E+02 0.0035 35.8 14.1 105 361-469 430-541 (1426)
290 PF01603 B56: Protein phosphat 58.1 1E+02 0.0022 32.0 11.0 233 277-521 132-378 (409)
291 cd03565 VHS_Tom1 VHS domain fa 57.7 31 0.00067 29.8 6.0 70 401-470 39-115 (141)
292 cd00197 VHS_ENTH_ANTH VHS, ENT 51.5 75 0.0016 26.1 7.2 68 401-468 38-113 (115)
293 PF11864 DUF3384: Domain of un 51.0 3.2E+02 0.007 28.8 21.1 91 374-469 229-329 (464)
294 PF01603 B56: Protein phosphat 50.6 2E+02 0.0042 29.9 11.6 246 215-471 109-371 (409)
295 PF12783 Sec7_N: Guanine nucle 48.9 74 0.0016 28.2 7.2 87 396-484 69-160 (168)
296 cd08050 TAF6 TATA Binding Prot 48.6 92 0.002 31.4 8.6 104 154-267 178-298 (343)
297 KOG2549 Transcription initiati 48.2 3.7E+02 0.0081 28.7 13.0 142 199-349 210-370 (576)
298 PF12231 Rif1_N: Rap1-interact 47.9 3.2E+02 0.0069 27.9 13.0 192 287-480 2-214 (372)
299 PF11791 Aconitase_B_N: Aconit 46.1 45 0.00099 29.0 5.0 28 280-307 96-123 (154)
300 KOG2549 Transcription initiati 44.4 4.3E+02 0.0093 28.3 12.9 128 153-290 206-351 (576)
301 cd08050 TAF6 TATA Binding Prot 44.1 1.3E+02 0.0028 30.4 8.8 111 238-348 211-339 (343)
302 cd03572 ENTH_epsin_related ENT 42.6 1.1E+02 0.0024 25.6 6.8 71 400-470 38-119 (122)
303 PF14663 RasGEF_N_2: Rapamycin 42.1 89 0.0019 25.9 6.1 40 197-236 9-48 (115)
304 PF08216 CTNNBL: Catenin-beta- 39.9 44 0.00095 27.3 3.8 41 418-458 64-104 (108)
305 PF06012 DUF908: Domain of Unk 39.8 1.7E+02 0.0037 29.3 9.0 66 415-480 237-307 (329)
306 cd03572 ENTH_epsin_related ENT 39.5 1.9E+02 0.0041 24.3 7.6 74 152-225 36-119 (122)
307 KOG1949 Uncharacterized conser 39.3 5.8E+02 0.013 28.4 17.5 180 281-469 177-369 (1005)
308 PF08216 CTNNBL: Catenin-beta- 39.0 49 0.0011 27.1 3.9 42 213-254 63-104 (108)
309 PF14631 FancD2: Fanconi anaem 39.0 8.2E+02 0.018 30.1 19.2 258 239-514 194-503 (1426)
310 cd00197 VHS_ENTH_ANTH VHS, ENT 38.6 2.2E+02 0.0047 23.3 8.4 71 154-224 37-114 (115)
311 KOG0413 Uncharacterized conser 38.4 1.3E+02 0.0028 34.3 8.1 122 336-470 947-1073(1529)
312 PF04869 Uso1_p115_head: Uso1 38.3 4.1E+02 0.0089 26.4 12.4 168 320-511 35-229 (312)
313 KOG1949 Uncharacterized conser 38.1 6E+02 0.013 28.2 13.6 144 199-349 177-331 (1005)
314 KOG1410 Nuclear transport rece 38.0 6E+02 0.013 28.1 18.7 141 156-306 7-156 (1082)
315 PF06012 DUF908: Domain of Unk 37.6 1.6E+02 0.0034 29.6 8.3 76 211-286 237-324 (329)
316 PF04388 Hamartin: Hamartin pr 37.3 3.7E+02 0.008 30.0 11.7 61 454-514 81-141 (668)
317 PLN03076 ARF guanine nucleotid 36.9 9.6E+02 0.021 30.2 18.4 256 166-429 1149-1489(1780)
318 PF10274 ParcG: Parkin co-regu 36.4 3.3E+02 0.0071 24.7 9.2 56 375-430 53-110 (183)
319 KOG2038 CAATT-binding transcri 36.3 1.4E+02 0.0029 33.2 7.7 106 400-514 304-410 (988)
320 PF10474 DUF2451: Protein of u 35.6 27 0.00058 33.1 2.3 77 35-118 92-168 (234)
321 PF08389 Xpo1: Exportin 1-like 35.0 2.7E+02 0.0059 23.4 9.2 124 211-344 3-148 (148)
322 PF04821 TIMELESS: Timeless pr 34.8 4.3E+02 0.0093 25.5 13.4 126 154-309 13-151 (266)
323 PF11791 Aconitase_B_N: Aconit 34.5 1.2E+02 0.0026 26.5 5.7 35 443-477 96-130 (154)
324 KOG1087 Cytosolic sorting prot 34.3 67 0.0015 33.7 5.1 70 400-469 38-111 (470)
325 PF04499 SAPS: SIT4 phosphatas 33.7 2.4E+02 0.0053 29.9 9.2 108 360-469 19-147 (475)
326 KOG1410 Nuclear transport rece 32.7 7.2E+02 0.016 27.5 13.9 250 199-471 8-285 (1082)
327 PF13001 Ecm29: Proteasome sta 32.1 6.6E+02 0.014 26.9 14.6 171 247-429 247-443 (501)
328 KOG2199 Signal transducing ada 31.9 1.3E+02 0.0028 30.5 6.3 69 401-469 46-117 (462)
329 PF14663 RasGEF_N_2: Rapamycin 31.1 1E+02 0.0022 25.5 4.8 39 442-480 9-47 (115)
330 PF12054 DUF3535: Domain of un 30.6 4.4E+02 0.0096 27.6 10.5 207 253-469 103-341 (441)
331 PF12397 U3snoRNP10: U3 small 30.6 2.2E+02 0.0047 23.6 6.8 68 442-514 7-75 (121)
332 KOG2005 26S proteasome regulat 30.5 7.8E+02 0.017 27.2 16.2 77 195-272 47-131 (878)
333 PF01365 RYDR_ITPR: RIH domain 30.5 2E+02 0.0042 26.5 7.2 113 273-389 38-169 (207)
334 cd03565 VHS_Tom1 VHS domain fa 30.3 3.1E+02 0.0068 23.6 7.9 70 197-266 39-115 (141)
335 PF12830 Nipped-B_C: Sister ch 29.6 4.2E+02 0.0092 23.9 14.3 72 152-228 6-77 (187)
336 PF12726 SEN1_N: SEN1 N termin 29.2 6E+02 0.013 28.6 12.0 110 155-266 442-553 (727)
337 PF04499 SAPS: SIT4 phosphatas 29.0 6.4E+02 0.014 26.7 11.4 80 310-389 53-148 (475)
338 KOG0392 SNF2 family DNA-depend 28.7 1.6E+02 0.0035 34.7 7.0 106 401-514 817-926 (1549)
339 smart00567 EZ_HEAT E-Z type HE 27.8 79 0.0017 18.6 2.7 28 211-248 2-29 (30)
340 KOG0891 DNA-dependent protein 26.8 1.3E+03 0.029 29.9 14.8 278 241-525 485-775 (2341)
341 PF07571 DUF1546: Protein of u 26.6 1.5E+02 0.0032 23.5 4.8 56 209-264 19-76 (92)
342 KOG2199 Signal transducing ada 26.3 2E+02 0.0043 29.3 6.5 71 196-266 45-118 (462)
343 PF12765 Cohesin_HEAT: HEAT re 25.9 54 0.0012 21.6 1.8 25 196-220 18-42 (42)
344 PLN03205 ATR interacting prote 25.4 1.2E+02 0.0027 30.8 4.9 116 402-517 325-450 (652)
345 KOG4337 Microsomal triglycerid 25.3 9.4E+02 0.02 26.5 16.8 218 236-476 358-600 (896)
346 PF12726 SEN1_N: SEN1 N termin 25.2 7.7E+02 0.017 27.8 12.0 105 200-307 445-553 (727)
347 PRK09169 hypothetical protein; 25.2 1.6E+03 0.034 29.0 24.9 60 165-225 175-236 (2316)
348 KOG1848 Uncharacterized conser 25.1 8.8E+02 0.019 29.3 12.0 95 209-307 855-958 (1610)
349 PF07923 N1221: N1221-like pro 25.1 1.6E+02 0.0035 28.9 5.8 59 149-207 55-127 (293)
350 PF03130 HEAT_PBS: PBS lyase H 24.5 96 0.0021 18.0 2.6 26 294-329 1-26 (27)
351 KOG4231 Intracellular membrane 24.3 64 0.0014 33.8 2.8 73 281-355 331-404 (763)
352 KOG2005 26S proteasome regulat 23.5 1E+03 0.022 26.3 14.7 193 153-346 47-293 (878)
353 PF04388 Hamartin: Hamartin pr 23.2 7.7E+02 0.017 27.5 11.2 64 365-428 73-139 (668)
354 KOG1087 Cytosolic sorting prot 21.7 2E+02 0.0044 30.3 6.0 69 280-348 40-111 (470)
355 KOG0392 SNF2 family DNA-depend 21.7 1.5E+03 0.032 27.4 17.2 240 149-429 72-325 (1549)
356 PF06685 DUF1186: Protein of u 21.5 7.2E+02 0.016 23.8 11.7 121 156-282 75-201 (249)
357 cd04894 ACT_ACR-like_1 ACT dom 21.4 63 0.0014 23.4 1.5 19 37-55 50-68 (69)
358 PF01365 RYDR_ITPR: RIH domain 21.2 2.4E+02 0.0052 25.9 6.0 97 431-531 33-148 (207)
359 KOG4231 Intracellular membrane 20.5 2.2E+02 0.0048 30.1 5.7 68 200-267 332-400 (763)
360 KOG1525 Sister chromatid cohes 20.5 1.6E+03 0.034 27.3 21.5 147 277-429 258-405 (1266)
361 KOG1525 Sister chromatid cohes 20.2 4.9E+02 0.011 31.3 9.1 145 196-349 259-405 (1266)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3.7e-32 Score=310.36 Aligned_cols=366 Identities=25% Similarity=0.317 Sum_probs=309.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--c-hh-
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--S-CE- 230 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~-~~- 230 (534)
.|+.|+..|.+++...|..|+..|.++..+ ++++..++..|++++|+.+|++++++.|+.|+.+|.+|+.++ + ++
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 489999999999999999999999999865 678888888999999999999999999999999999999875 3 34
Q ss_pred HHHHhcCCHHHHHHHHccCC---HHHHHHHHHHHHHhhcChhhHH-HHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471 231 NWLVSEGVLPPLIRLVESGS---TVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~Ls~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (534)
..++..|++|+|+.++++++ ..+++.++.+|.+|+.++++.+ .+++.|+++.|+.++.++++..+..|+++|.+++
T Consensus 138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La 217 (2102)
T PLN03200 138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM 217 (2102)
T ss_pred hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45668999999999999873 3467788999999999988875 5689999999999999999999999999998888
Q ss_pred CC-chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC-----------
Q 009471 307 AV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP----------- 374 (534)
Q Consensus 307 ~~-~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~----------- 374 (534)
.. ++.+..+++.|+|+.|+++++++++..+|++|+++|.||+.+++++++.+++.|+++.|++++..+
T Consensus 218 ss~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~ 297 (2102)
T PLN03200 218 MAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQ 297 (2102)
T ss_pred cCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccch
Confidence 65 678999999999999999998766547899999999999999999999999999999999998642
Q ss_pred chHHHHHHHHHHhhcC--c-----------cH--H---------------------------------------------
Q 009471 375 LPQESAVGALRNLVGS--V-----------SQ--E--------------------------------------------- 394 (534)
Q Consensus 375 ~~~~~a~~aL~~La~~--~-----------~~--~--------------------------------------------- 394 (534)
..++.|+++|.|||.. . .+ .
T Consensus 298 ~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~ 377 (2102)
T PLN03200 298 ALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTK 377 (2102)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCc
Confidence 2489999999998872 1 00 0
Q ss_pred ---------------------HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcC
Q 009471 395 ---------------------VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA 452 (534)
Q Consensus 395 ---------------------~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~ 452 (534)
.+.+.+.++.|+.++...+.++|..++++|++++.+ .+.++.+.+.|++|.|+++|.+
T Consensus 378 ~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s 457 (2102)
T PLN03200 378 LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL 457 (2102)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC
Confidence 001122334445555556678899999999999965 8899999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHH
Q 009471 453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERL 522 (534)
Q Consensus 453 ~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l 522 (534)
.+..+|+.|+++|.+++......+..+.+.|+++.|+++|.++ +..+++.|+++|.|++.+.+.....+
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 9999999999999999876554455555689999999999876 45799999999999998755544444
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-33 Score=264.68 Aligned_cols=363 Identities=24% Similarity=0.315 Sum_probs=323.3
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (534)
+...++.+..+++.+...+..|..++.+++-.. +++..+++.+|++.|+.-+..+..++|..++.++.+|+..+++|..
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhh
Confidence 345677788899999999999999999998644 3556677889999998888788889999999999999999999999
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHH
Q 009471 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~ 312 (534)
+...|++.++.++-++.+..+++.+..+|.+|+...++++.++..|++|.|+.+++++++++|..++.++.|++.....|
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhC--cHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc--hHHHHHHHHHHhh
Q 009471 313 QMLAEEG--IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLV 388 (534)
Q Consensus 313 ~~i~e~g--~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~--~~~~a~~aL~~La 388 (534)
+.+++.+ .++.|++++.++++ .++-.|..+|+|+++ +...+..+++.|++|.+++++++|. .-...+.+++|++
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis 320 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS 320 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc
Confidence 9999866 99999999999998 899999999999998 4556668999999999999998853 3455678899999
Q ss_pred c-CccHHHHHhcCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 009471 389 G-SVSQEVLISLGFFPRLVHVLKAGSL-GAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465 (534)
Q Consensus 389 ~-~~~~~~l~~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL 465 (534)
- +-+...+.+.||+.+|+++|+.++. ++|..|..+|++|+. ++.+++.+.+.|.+|.+..++.+++..+|.....++
T Consensus 321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 8 6677778899999999999998875 599999999999997 588899999999999999999999999999999999
Q ss_pred HHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHH
Q 009471 466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLE 520 (534)
Q Consensus 466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~ 520 (534)
..|+.....+..+ .+.|.++.|+.++.+. +++++.++..+|.|+++......+
T Consensus 401 a~Lal~d~~k~~l-ld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~Yar 453 (550)
T KOG4224|consen 401 AQLALNDNDKEAL-LDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYAR 453 (550)
T ss_pred HHHHhccccHHHH-hhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHH
Confidence 9997655554444 5679999999999987 558999999999999998444433
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=276.08 Aligned_cols=357 Identities=18% Similarity=0.256 Sum_probs=312.9
Q ss_pred chHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhH
Q 009471 154 GNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CEN 231 (534)
Q Consensus 154 ~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~ 231 (534)
..|+.++..|.. .++..+.+|+.+|.+++.+..+..+.+++.|.||.+++++.+++.++++.|+++|++++.+.+ +|+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 679999999974 458999999999999999999988999999999999999999999999999999999999987 999
Q ss_pred HHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhhcChhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471 232 WLVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~Ls~~~~~~~~l~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (534)
.+...|++++|+.++..... .....+.|+|.||+.+......+. -...+|.|..++.+.|+++...+||+|.+|+.++
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998765 678899999999998753222222 1455799999999999999999999999999866
Q ss_pred -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHH
Q 009471 310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALR 385 (534)
Q Consensus 310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~ 385 (534)
+.-+.+++.|+++.|+++|.+... .++..|+++++|++.+++...+.++..|+++.|..++.. ..++..|++++.
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSP-KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCc-ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 677778899999999999999887 799999999999999999999999999999999999974 347899999999
Q ss_pred Hhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471 386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (534)
Q Consensus 386 ~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A 461 (534)
|++. ....+.+++.|++|.|+++|++++..+|++|+|+|.|++.+ ++.-+++++.|++++|+++|.-.+..+...+
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~ 427 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVA 427 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHH
Confidence 9998 45667889999999999999999999999999999999965 7888999999999999999998899999999
Q ss_pred HHHHHHhcCCCc--------chHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471 462 AQAISSLVTLPQ--------NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (534)
Q Consensus 462 ~~aL~~L~~~~~--------~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~ 512 (534)
+.+|.++....+ .-...+.+.|++..+-.|=.+. ++++.+.|...+.+--
T Consensus 428 Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~he-n~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 428 LDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHE-NEEIYKKAYKIIDTYF 485 (514)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccc-cHHHHHHHHHHHHHhc
Confidence 999999984422 2345677889988877766665 4578788877776543
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.6e-31 Score=305.35 Aligned_cols=350 Identities=22% Similarity=0.276 Sum_probs=310.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWL 233 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l 233 (534)
.++.|+..|..++.+.+.+++..|..++.++++....+.+.|+++.|+++|++++..+|+.|+++|++++... +++..+
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4667888899999999999999999999988999999999999999999999999999999999999999765 488999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHH
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~ 312 (534)
++.|++|+|+++|.+++..+++.|+|+|.|++.++++.+.++ ..|++++|+++++++++..+..++++|.|++.+.+..
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~ 564 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA 564 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999999999877766655 6899999999999999999999999999998764432
Q ss_pred HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC---ChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHh
Q 009471 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS---NENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL 387 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~---~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~L 387 (534)
.++.++.++.+.++ ..+..++.+|.++... ++..++.....|+++.|.+++++ +..++.|+++|.++
T Consensus 565 -------~I~~Lv~LLlsdd~-~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL 636 (2102)
T PLN03200 565 -------TISQLTALLLGDLP-ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADI 636 (2102)
T ss_pred -------HHHHHHHHhcCCCh-hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34778888887776 7888899999888652 22233333467999999999987 66899999999999
Q ss_pred hc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 009471 388 VG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ 463 (534)
Q Consensus 388 a~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~ 463 (534)
+. ++..+.++..|++++++.+|++++.++++.++|+|.+++.+ .+.+..+.+.|++++|++++.+.+.++++.|+.
T Consensus 637 ~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ 716 (2102)
T PLN03200 637 FSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC 716 (2102)
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence 98 45567888999999999999999999999999999999964 566677899999999999999999999999999
Q ss_pred HHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 464 aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+|.+++.+++++.++.. +++++.|+++|.++. ...|++|+++|.+|+.+
T Consensus 717 ALanLl~~~e~~~ei~~-~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 717 ALANLLSDPEVAAEALA-EDIILPLTRVLREGT-LEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHHHcCchHHHHHHh-cCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhC
Confidence 99999999999988886 588999999999983 47999999999999977
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-30 Score=262.09 Aligned_cols=359 Identities=20% Similarity=0.252 Sum_probs=307.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-hhH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-CEN 231 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-~~~ 231 (534)
....++..+.++++..+..+...+..+..... .....++..|.|+.+|++|... ++.+|..|+++|.+++.... ...
T Consensus 67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 37888889999999999999999999975322 2334555669999999999865 49999999999999998764 677
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHccCCc
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVP 309 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~ 309 (534)
.+++.|++|.+++++.+++..+++.|.|+|.|++.+.+. +..+..+|++++|+.++...++ .....+.|+|.||+.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 888999999999999999999999999999999988655 5577789999999999988776 67789999999999976
Q ss_pred hHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471 310 EVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN 386 (534)
Q Consensus 310 ~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~ 386 (534)
.....+.. ..+++.|..++.+.+. ++...++++|.+|+.+..+..+.+++.|+++.|+.+|.+ +.++.+|+++++|
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43333333 6679999999999887 899999999999999888888999999999999999987 5588999999999
Q ss_pred hhc--CccHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHH
Q 009471 387 LVG--SVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA 462 (534)
Q Consensus 387 La~--~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~ 462 (534)
++. ....+.++..|.++.|..++. +....++++|+|+|.|++.. .+..++++++|.+|.|+.++++.+..+|..|+
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 998 345567889999999999998 55567999999999999965 88999999999999999999999999999999
Q ss_pred HHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhH
Q 009471 463 QAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSA 515 (534)
Q Consensus 463 ~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~ 515 (534)
++++|++.. .++.-.++.+.|.++++..+|.-. +..+...+..+|.++-...
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILKVG 438 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHHHH
Confidence 999999943 566666777789999999999655 3355788888888886653
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-31 Score=248.37 Aligned_cols=356 Identities=19% Similarity=0.279 Sum_probs=321.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
.+..|+..+.+++-+.+..+...+.+++.. +.++..+...|++.++.++-++.+..+|..+..+|.++....++|+.++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 356778888888889999999999999876 5577788888999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCC--ChHHHHHHHccCChHHHHHHHHHHHHccCCchHH
Q 009471 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHG--GVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g--~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~ 312 (534)
..|++|.|+.++++++.+++++++.++.+++.+..+++.+++.+ .++.|+.++.++++.++..|..+|+|++.+.+.+
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 99999999999999999999999999999999988888888876 9999999999999999999999999999999999
Q ss_pred HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc
Q 009471 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG 389 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~ 389 (534)
..+++.|.+|.++++++++.. ......+.|+.|++. .+-+...+.+.|.+.+|+++|+- .+.|.+|..+|+||+.
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~-plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMG-PLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hHHHhcCCchHHHHHHhCcch-hHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 999999999999999998887 577788899999997 45555678899999999999953 6699999999999997
Q ss_pred --CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471 390 --SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS 467 (534)
Q Consensus 390 --~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~ 467 (534)
..+...+.+.|.++.+..++.++...+|.+...++..|+.++..+.++.+.|.+|.|+.+..+.+.+++..|+.+|.|
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~N 443 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALIN 443 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHh
Confidence 577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcchHHHHhh-----CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 468 LVTLPQNCREVKRD-----DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 468 L~~~~~~~~~~~~~-----~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
++.+.++-..++.. .|.-..|++.+.+. +...+..+.+++..|..+
T Consensus 444 lss~v~~YarviEawd~P~~gi~g~L~Rfl~S~-~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 444 LSSDVEHYARVIEAWDHPVQGIQGRLARFLASH-ELTFRHIARWTIQQLLED 494 (550)
T ss_pred hhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHh
Confidence 99888777666541 23445788988886 446888889999888876
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.98 E-value=2.9e-30 Score=241.16 Aligned_cols=361 Identities=16% Similarity=0.183 Sum_probs=306.3
Q ss_pred hhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCC
Q 009471 150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESG 227 (534)
Q Consensus 150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~ 227 (534)
..+...+|.+.+.|.++|.+.+.+|...++++++. .......+++.|.||.+++++++. ..-.+-.|+++|.++++..
T Consensus 67 qq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 67 QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 34455789999999999999999999999999853 223446778999999999999554 4667889999999999876
Q ss_pred c-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCCh--HHHHHHHHHHH
Q 009471 228 S-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDS--VSQAAAACTLK 303 (534)
Q Consensus 228 ~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~--~~~~~a~~aL~ 303 (534)
. ..+.++++|.+|.++++|.+++.++++++.|+|.|++.+++. +..+.+.|++++++.++.+..+ .+...+.|+|.
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 5 566778999999999999999999999999999999998766 4568889999999999987765 66789999999
Q ss_pred HccCCc---hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC--chHH
Q 009471 304 NISAVP---EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQE 378 (534)
Q Consensus 304 nLa~~~---~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~ 378 (534)
||+.+. ..-..+ ...+|.|.+++.+.++ ++...|++++..|+.+..+..+.+++.|....|+++|.++ .++.
T Consensus 227 NlcRGknP~P~w~~i--sqalpiL~KLiys~D~-evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 227 NLCRGKNPPPDWSNI--SQALPILAKLIYSRDP-EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred HhhCCCCCCCchHHH--HHHHHHHHHHHhhcCH-HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 999853 222223 3469999999999887 8999999999999998888888999999999999999874 5789
Q ss_pred HHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCCh
Q 009471 379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPN 455 (534)
Q Consensus 379 ~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~ 455 (534)
++++.++|+.. ....+.++..|+++.+..+|.+....++++|||.+.|+.. +.+..+++++.+.+|+|++++...+.
T Consensus 304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~ 383 (526)
T COG5064 304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY 383 (526)
T ss_pred HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99999999998 3445678899999999999999989999999999999985 58899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcch---HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 456 SVREVAAQAISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 456 ~v~~~A~~aL~~L~~~~~~~---~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.++..|+|++.+...+..++ -.+.-+.|.+.+|..+|+-.++ .+-.-++-++.|+...
T Consensus 384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN-kiiev~LD~~eniLk~ 444 (526)
T COG5064 384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN-KIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc-cchhhhHHHHHHHHhh
Confidence 99999999999998664333 3344467999999999998754 4556668888877665
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.8e-30 Score=241.25 Aligned_cols=357 Identities=17% Similarity=0.255 Sum_probs=303.6
Q ss_pred hchHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471 153 HGNTRELLARLQIGHL-EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~-~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (534)
...|+.++..+..... -.+.+|+.+|.+++++.....+.+++.|+||.++++|.+++.++++.++++|++++++++ +|
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 3468888998854444 448899999999999888777888999999999999999999999999999999999987 99
Q ss_pred HHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471 231 NWLVSEGVLPPLIRLVESGS--TVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (534)
+.+.+.|++.+++.++.+.. ......+.|+|.||+.. ++.-|.-. ...+|.|.+++-+.|+++...|||++..|+
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 99999999999999999874 47788999999999864 43333322 234699999999999999999999999999
Q ss_pred CCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHH
Q 009471 307 AVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA 383 (534)
Q Consensus 307 ~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~a 383 (534)
.++ +.-..+.+.|..+.|+++|.+++. .++..++..++|+..+++...+.+++.|.++.+..+|.+ ..++..+|++
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~sa-~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHESA-KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCccc-cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 988 666778889999999999999887 799999999999999999888899999999999999988 4689999999
Q ss_pred HHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC----hhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471 384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS----AEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (534)
Q Consensus 384 L~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~----~~~~~~i~~~g~v~~Lv~ll~~~~~~v 457 (534)
+.|++. .+..+.+++.+.+|+|+++|.+.+..++++|||++.|.... |+..+++.+.|++++|++++.-.+..+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki 430 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence 999998 35567889999999999999999999999999999999864 889999999999999999999777778
Q ss_pred HHHHHHHHHHhcCCC--------cc---hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471 458 REVAAQAISSLVTLP--------QN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (534)
Q Consensus 458 ~~~A~~aL~~L~~~~--------~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~ 512 (534)
-+.++.++.++.... .| -..++.+.|++..+..+-++. +..+-..|.+++...-
T Consensus 431 iev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~-n~~iy~KAYsIIe~fF 495 (526)
T COG5064 431 IEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSV-NRTIYDKAYSIIEKFF 495 (526)
T ss_pred hhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcc-ccHHHHHHHHHHHHHc
Confidence 888899999887432 11 134566788888777776665 4466666666666554
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=4.5e-24 Score=226.90 Aligned_cols=353 Identities=19% Similarity=0.217 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCC
Q 009471 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS 250 (534)
Q Consensus 171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~ 250 (534)
.+-+...|.+++. +++....+.+.|+|+.|+++|++++.++...++.+|.+|+...+++..+.+.|+++.|++++.+++
T Consensus 266 lrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 266 LRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 3455666788775 667778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhc
Q 009471 251 TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC 330 (534)
Q Consensus 251 ~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~ 330 (534)
.+++..+.++|.|||.+++.+..+++.|.+|.|+.+|.+ +..+..++.+|++++..++.+..+...++++.+++++..
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~ 422 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLE 422 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHh
Confidence 999999999999999999999999999999999999985 446677999999999999999999999999999999866
Q ss_pred CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh------------cC-------------------------
Q 009471 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL------------DG------------------------- 373 (534)
Q Consensus 331 ~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L------------~~------------------------- 373 (534)
++...+....+..+.|++. ++.+.+.+.+.++++.|++.. ++
T Consensus 423 ~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~ 501 (708)
T PF05804_consen 423 NSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS 501 (708)
T ss_pred CCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 5544677778888899887 556666777777777655432 11
Q ss_pred ---CchHHHHHHHHHHhhc-CccHHH-HHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHH
Q 009471 374 ---PLPQESAVGALRNLVG-SVSQEV-LISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLL 446 (534)
Q Consensus 374 ---~~~~~~a~~aL~~La~-~~~~~~-l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~L 446 (534)
++....++++|.||.. +..... +.+.+++|.|...|..+ .+++.-+++..++.++.+++....+.+.|.++.|
T Consensus 502 ~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~L 581 (708)
T PF05804_consen 502 GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTL 581 (708)
T ss_pred CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHH
Confidence 1234568888888886 333344 44689999999999765 3689999999999999999999999999999999
Q ss_pred HHhhcC--CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHHhh
Q 009471 447 IKLLEA--KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLER 524 (534)
Q Consensus 447 v~ll~~--~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l~~ 524 (534)
+.++.+ .+.+..-..+.+++.+..+.+.++.++.+.+.+..|+.++++. +..+++.|-.+|--++...+++.+++..
T Consensus 582 i~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~-N~~ir~~~d~~Ldii~e~d~~w~~ri~~ 660 (708)
T PF05804_consen 582 IELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDK-NAEIRKVCDNALDIIAEYDEEWAERIRR 660 (708)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCHHHHHHhhH
Confidence 999974 4688889999999999999999999999888999999999997 5589999999999999999999999988
Q ss_pred cccc
Q 009471 525 GRLR 528 (534)
Q Consensus 525 ~~~~ 528 (534)
.||+
T Consensus 661 ~kF~ 664 (708)
T PF05804_consen 661 EKFR 664 (708)
T ss_pred HHHH
Confidence 8775
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=7.6e-20 Score=194.80 Aligned_cols=364 Identities=18% Similarity=0.187 Sum_probs=293.0
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh-cCCcHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCC
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTAT---SPRIREKTVTVICSLAESG 227 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~~---~~~v~~~A~~~L~~La~~~ 227 (534)
....+.+++..|-.+ ...|.++...+.+|+. +|+|...++ .+..+.+|.+.|+.. +.++....+.++..++...
T Consensus 121 ~~~~~d~yiE~lYe~-~~ek~~~~~~il~La~-~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~ 198 (708)
T PF05804_consen 121 SINDLDEYIELLYED-IPEKIRGTSLILQLAR-NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS 198 (708)
T ss_pred CHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhC-CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence 345577777777644 5668889999999987 455655555 456788999999653 4777778888888888777
Q ss_pred chhHHHHhcCCHHHHHHHHccC-----------------------------------------CHHHHHHHHHHHHHhhc
Q 009471 228 SCENWLVSEGVLPPLIRLVESG-----------------------------------------STVGKEKATISLQRLSM 266 (534)
Q Consensus 228 ~~~~~l~~~g~i~~Lv~lL~~~-----------------------------------------~~~~~~~A~~~L~~Ls~ 266 (534)
+....+.+..+-...+++++.+ ...+...+...|.||+.
T Consensus 199 ~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAe 278 (708)
T PF05804_consen 199 QFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAE 278 (708)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666665555444444444210 11233456678999999
Q ss_pred ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN 346 (534)
Q Consensus 267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~ 346 (534)
++.+...+...|+++.|+++|..++.++...+...|.+|+...+++..|.+.|+++.|.+++.+++. ..+..++.+|.|
T Consensus 279 d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~-~l~~~aLrlL~N 357 (708)
T PF05804_consen 279 DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE-DLVNVALRLLFN 357 (708)
T ss_pred ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998886 899999999999
Q ss_pred HccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHH
Q 009471 347 LTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASAL 424 (534)
Q Consensus 347 La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL 424 (534)
|+. ++..|..+++.|.+|.|+.++.++..+..++.+|.+++. ..++..+..++.++.+++++-+ +++.++..++..+
T Consensus 358 LSf-d~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~ 436 (708)
T PF05804_consen 358 LSF-DPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALL 436 (708)
T ss_pred hCc-CHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHH
Confidence 998 678899999999999999999998899999999999999 6677777788999999998754 5677888899999
Q ss_pred HHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHH
Q 009471 425 CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA 504 (534)
Q Consensus 425 ~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a 504 (534)
.|++.++.+.+.+.+.|+++.|++..-.... ...+..+.|++.++++.+..+. +.+..|+..+..+++++..-.+
T Consensus 437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~ 511 (708)
T PF05804_consen 437 INLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVEC 511 (708)
T ss_pred HHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHH
Confidence 9999999999999998999999988753322 2345689999988755555554 4788899998887677899999
Q ss_pred HHHHHhhchhHHHHHHHHhh
Q 009471 505 VACLASLSPSARKLLERLER 524 (534)
Q Consensus 505 ~~~L~~L~~~~k~~~~~l~~ 524 (534)
+.+|.||+.....+.+-+..
T Consensus 512 LGiLaNL~~~~ld~~~ll~~ 531 (708)
T PF05804_consen 512 LGILANLTIPDLDWAQLLQE 531 (708)
T ss_pred HHHHHhcccCCcCHHHHHHh
Confidence 99999998764444444433
No 11
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=7.2e-19 Score=164.99 Aligned_cols=313 Identities=18% Similarity=0.222 Sum_probs=264.2
Q ss_pred hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHH
Q 009471 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGS-CENWLVSEGVLP 240 (534)
Q Consensus 164 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~ 240 (534)
.+++.....+++.+|..+....| .+++..+...++.+|.. ++.++....+..+..-+...+ +|..+++.++++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 46777788899999999998777 45677889999998865 457888888888888877655 999999999999
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHhhcChh----------hHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCC
Q 009471 241 PLIRLVESG-STVGKEKATISLQRLSMSAE----------MARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 241 ~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~----------~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~ 308 (534)
.+...|... ...+.+..+++++.|..+++ .++.|++.|+...|++.++. -+|.+....+.+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999777654 44577889999999987765 45788899999999999875 3789999999999999999
Q ss_pred chHHHHHHhhCcHHHHHHHhhcCCChhHH---HHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh----cCCchHHHHH
Q 009471 309 PEVRQMLAEEGIVSVMIKLLDCGILLGSK---EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAV 381 (534)
Q Consensus 309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~---~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L----~~~~~~~~a~ 381 (534)
++.|+.+.|.|++..++.++.+.+....+ ..++..|+.|+. +++++..+++.||.+.++.++ ++|.+-+.++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999875443444 567788888885 788899999999999999876 3477888889
Q ss_pred HHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCC--HHHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhcCCChH
Q 009471 382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS--LGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNS 456 (534)
Q Consensus 382 ~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~--~~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~ 456 (534)
.++.-||. ++....+++.|.-...++.++... ..+|++|+++++|++ ++.++++.+...| ++.|+....+.++.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHET 430 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCcc
Confidence 99999986 788889999999999999997665 589999999999998 4578888777765 99999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHhhC
Q 009471 457 VREVAAQAISSLVTLPQNCREVKRDD 482 (534)
Q Consensus 457 v~~~A~~aL~~L~~~~~~~~~~~~~~ 482 (534)
++..|-.+|..|..+..++++-....
T Consensus 431 ce~~akaALRDLGc~v~lre~wtg~~ 456 (461)
T KOG4199|consen 431 CEAAAKAALRDLGCDVYLREEWTGAE 456 (461)
T ss_pred HHHHHHHHHHhcCcchhhHHHhcccc
Confidence 99999999999998888887765433
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.85 E-value=2.6e-19 Score=186.34 Aligned_cols=359 Identities=20% Similarity=0.223 Sum_probs=283.7
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC---c
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG---S 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~---~ 228 (534)
....+++.+.+|.+.++..+..|...+..++..+.+.+..+.+.|+|+.|+.+|++.+.+++..|+.+|.||.... +
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 4557899999999999999999999999999999999999999999999999999999999999999999998754 3
Q ss_pred hhHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc--------------CChH
Q 009471 229 CENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--------------GDSV 293 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~--------------~~~~ 293 (534)
++-.+.+.++++.++++|+. .|.++++.+..+||||+.++..+..++. .++..|..-+-. .+..
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 88999999999999999997 6999999999999999999776666553 333444332211 1245
Q ss_pred HHHHHHHHHHHccC-CchHHHHHHh-hCcHHHHHHHhhc-----CCChhHHHHHHHHHHHHccCCh-----HHHHHHH--
Q 009471 294 SQAAAACTLKNISA-VPEVRQMLAE-EGIVSVMIKLLDC-----GILLGSKEYAAECLQNLTASNE-----NLRRSVV-- 359 (534)
Q Consensus 294 ~~~~a~~aL~nLa~-~~~~~~~i~e-~g~i~~L~~ll~~-----~~~~~v~~~a~~~L~~La~~~~-----~~~~~i~-- 359 (534)
+-..+.++|+|++. +.+.|+.|.+ .|.|..|+..++. ..+....++|+..|.|+...-+ ..+....
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 66889999999998 6699999998 8999999988862 2222679999999999987321 0110000
Q ss_pred ----------------------------------------------hcCChHHHHHhh---cCCchHHHHHHHHHHhhcC
Q 009471 360 ----------------------------------------------SEGGIRSLLAYL---DGPLPQESAVGALRNLVGS 390 (534)
Q Consensus 360 ----------------------------------------------~~g~l~~L~~~L---~~~~~~~~a~~aL~~La~~ 390 (534)
+..++..-+.+| .++.+.+.+.++|.|++..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 011133323333 2367889999999999971
Q ss_pred ------ccHHHH-HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCC------ChHH
Q 009471 391 ------VSQEVL-ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK------PNSV 457 (534)
Q Consensus 391 ------~~~~~l-~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~------~~~v 457 (534)
..+..+ ....+++.++++|+.++..|...++.+|.||+.+..++..|. .++++.|++.+... +.++
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHH
Confidence 112233 567889999999999999999999999999999999999997 67899999999732 3788
Q ss_pred HHHHHHHHHHhc-CCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471 458 REVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (534)
Q Consensus 458 ~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~ 513 (534)
...++..|.++. ....|.+.+.. .++++.|+-+..+..++..-++|...|-.|=.
T Consensus 629 v~~vc~tl~niv~~~~~nAkdl~~-~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLNAKDLLE-IKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHHh-ccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 899999999999 66788888886 68999999999886544566677666665543
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.80 E-value=9.8e-18 Score=174.63 Aligned_cols=330 Identities=20% Similarity=0.238 Sum_probs=262.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC---hhhHHH
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS---AEMARA 273 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~~~ 273 (534)
++..+..|.+.++.+|-.|+.-+..++..+. .|..+.+.|+|+.|+.+|++.+.+++..|+++|.||... ++++-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 6777888999999999999999999998765 888999999999999999999999999999999999754 457889
Q ss_pred HHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh---c----C--C----ChhHHHH
Q 009471 274 IVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---C----G--I----LLGSKEY 339 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~---~----~--~----~~~v~~~ 339 (534)
+.+.+||+.++++++. .|.++++.+.++||||+..+..+..++.. .+..|.+-+- + + . ...+-.+
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n 393 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRN 393 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeeh
Confidence 9999999999999986 79999999999999999998888877764 3555554442 1 1 1 1256789
Q ss_pred HHHHHHHHccCChHHHHHHHh-cCChHHHHHhhcC--------CchHHHHHHHHHHhhcC-c--cH--------------
Q 009471 340 AAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--------PLPQESAVGALRNLVGS-V--SQ-------------- 393 (534)
Q Consensus 340 a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~~L~~--------~~~~~~a~~aL~~La~~-~--~~-------------- 393 (534)
+..||+|++......|+.+.+ .|.|+.|+.++++ ....++|+..++||... + .+
T Consensus 394 ~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~ 473 (717)
T KOG1048|consen 394 VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLP 473 (717)
T ss_pred hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccc
Confidence 999999999977888888874 6889999988853 45689999999999751 0 00
Q ss_pred ----------------HH----------------------HHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC----
Q 009471 394 ----------------EV----------------------LISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTS---- 430 (534)
Q Consensus 394 ----------------~~----------------------l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~---- 430 (534)
.. +....++..-..+| .+.++.+.+.++.+|-|++..
T Consensus 474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~ 553 (717)
T KOG1048|consen 474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW 553 (717)
T ss_pred cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence 00 01112233334444 456789999999999999854
Q ss_pred -hhHHHHH-HhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCc-----hhHHHH
Q 009471 431 -AEMKKLV-GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ-----NTAKKY 503 (534)
Q Consensus 431 -~~~~~~i-~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~-----~~~k~~ 503 (534)
...+..+ ..+.+.+.|+++++.++..+...++.+|.||+.+..|++.+.+ ..++.|++.|....+ ++....
T Consensus 554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHH
Confidence 3455555 6778999999999999999999999999999999999887774 899999999976533 456677
Q ss_pred HHHHHHhhchh----HHHHHHHHhhcccccc
Q 009471 504 AVACLASLSPS----ARKLLERLERGRLRSF 530 (534)
Q Consensus 504 a~~~L~~L~~~----~k~~~~~l~~~~~~~~ 530 (534)
+..+|.++... ||.+++.=+.++++-|
T Consensus 632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I 662 (717)
T KOG1048|consen 632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLI 662 (717)
T ss_pred HHHhHHHHHHHhHHHHHHHHhccChHHHHHH
Confidence 88888898855 7777766556665544
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.76 E-value=4.9e-15 Score=156.36 Aligned_cols=349 Identities=17% Similarity=0.204 Sum_probs=279.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcC
Q 009471 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEG 237 (534)
Q Consensus 159 Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g 237 (534)
++..|++.+.+....++..|..++...+. ..+ ..+..+.|...|.++++.+|..++..|.++..+++ ....+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP--DSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 88889988888888888888888764332 122 44788999999999999999999999999998776 466777889
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHH
Q 009471 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLA 316 (534)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~ 316 (534)
+++.++..+.+++..+...|+.+|.+++.++.....+...+++..|..++...++.+|..++.++.+++.. ++....+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999988888888888899999999988899999999999999875 47777778
Q ss_pred hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----Cc----hHHHHHHHHHHhh
Q 009471 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PL----PQESAVGALRNLV 388 (534)
Q Consensus 317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~----~~~~a~~aL~~La 388 (534)
+.|+++.++..+.+++. -++.+++++|..++. .++..+.+.+.|+++.|..++.+ |. .....+...++++
T Consensus 200 ~sgll~~ll~eL~~dDi-Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDI-LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred hccHHHHHHHHhcCccH-HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 89999999999998654 689999999999999 67778899999999999999965 31 1234457777777
Q ss_pred cCccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHH-HhcC-----chHHHHHhhcCCChHHHHH
Q 009471 389 GSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLV-GEAG-----CTPLLIKLLEAKPNSVREV 460 (534)
Q Consensus 389 ~~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i-~~~g-----~v~~Lv~ll~~~~~~v~~~ 460 (534)
.. .+..+.+ ..++..+.+++.+.++..+..|..+++.++.+.+.+..+ ...| .+..+-....++..+++.+
T Consensus 278 ~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r 356 (503)
T PF10508_consen 278 RV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLR 356 (503)
T ss_pred hc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHH
Confidence 63 2233332 456778888889999999999999999999999988888 4433 3444444455777899999
Q ss_pred HHHHHHHhcCCCcc--h-------HHHHh--hCCCHH-HHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 461 AAQAISSLVTLPQN--C-------REVKR--DDKSVP-NLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 461 A~~aL~~L~~~~~~--~-------~~~~~--~~~~v~-~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+..+|.++....+. . +.... ..+... .++.++... -+++|..+...|..|+..
T Consensus 357 ~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 357 ALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcC
Confidence 99999999643322 1 11111 223444 666777665 348999999999999988
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.1e-14 Score=134.14 Aligned_cols=314 Identities=18% Similarity=0.250 Sum_probs=248.5
Q ss_pred cCCcHHHHHHHh---cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhh-cC
Q 009471 194 GRSNIAALVQLL---TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLS-MS 267 (534)
Q Consensus 194 ~~g~v~~Lv~lL---~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls-~~ 267 (534)
+.|..+.++.++ .+++..+...++.+|..+....+ .+++..+...++.+|... +.++.......+..-+ .+
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 445566555543 44567778888889888887664 567888999999999764 5556555566666654 45
Q ss_pred hhhHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHccCCch----------HHHHHHhhCcHHHHHHHhhcCCChhH
Q 009471 268 AEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPE----------VRQMLAEEGIVSVMIKLLDCGILLGS 336 (534)
Q Consensus 268 ~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~----------~~~~i~e~g~i~~L~~ll~~~~~~~v 336 (534)
.-+++.|.+.+..+.+...+. .+..++.+..+++++-|..+++ ..+.|..+|++..|++.+..+.++++
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~ 258 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS 258 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH
Confidence 667888999999999986665 4455678889999999887554 34677788999999999987766678
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---Cc---hHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHH
Q 009471 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PL---PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVL 409 (534)
Q Consensus 337 ~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~---~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL 409 (534)
....+.+|..|+- .++..+.+.+.||+..|++++++ .. ....++..|+.|+. ......+++.|+.+.++.++
T Consensus 259 L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~ 337 (461)
T KOG4199|consen 259 LVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLA 337 (461)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHH
Confidence 8889999999997 56667799999999999999976 22 34678999999998 67788999999999999988
Q ss_pred h--cCCHHHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHhcCC-CcchHHHHhhCC
Q 009471 410 K--AGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSLVTL-PQNCREVKRDDK 483 (534)
Q Consensus 410 ~--~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~ 483 (534)
. +.+|.|.++++.+++-++ +.+++...+++.|+-...++-++.. ...+|..|++++.|++.. .++++.++. .
T Consensus 338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~--~ 415 (461)
T KOG4199|consen 338 LRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA--N 415 (461)
T ss_pred HHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh--c
Confidence 3 567999999999999999 6799999999999999999999743 477899999999999966 455566554 7
Q ss_pred CHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 484 SVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 484 ~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+++.|++.-..+ .++....+-.+|..|--+
T Consensus 416 GiE~Li~~A~~~-h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 416 GIEKLIRTAKAN-HETCEAAAKAALRDLGCD 445 (461)
T ss_pred cHHHHHHHHHhc-CccHHHHHHHHHHhcCcc
Confidence 889999888876 346777788888877654
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.71 E-value=1.4e-15 Score=164.65 Aligned_cols=351 Identities=19% Similarity=0.223 Sum_probs=267.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCCc----hh
Q 009471 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS---PRIREKTVTVICSLAESGS----CE 230 (534)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~---~~v~~~A~~~L~~La~~~~----~~ 230 (534)
.++..+...| +.+-...|..+.. +++....++..|.++.|+++|-.++ .+.+..|-.+|.+|....+ .|
T Consensus 201 sllsml~t~D---~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 201 SLLSMLGTDD---EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HHhhhcccCC---HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 4444444444 4455667777765 4455567788899999999996654 6889999999999988664 23
Q ss_pred HHHHhcCCHHHHHHHHc-------cC-------CHHHHH-HHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC-----
Q 009471 231 NWLVSEGVLPPLIRLVE-------SG-------STVGKE-KATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG----- 290 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~-------~~-------~~~~~~-~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~----- 290 (534)
..+.-..++..+..+.. .. ...-+. .|..+|..++++.+.+..+.+.|++.++-+++.-.
T Consensus 277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhg 356 (2195)
T KOG2122|consen 277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHG 356 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 33322233333333221 11 122233 67788999999999999999999999998887521
Q ss_pred -------ChHHHHHHHHHHHHccCCc-hHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHH-Hh
Q 009471 291 -------DSVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV-VS 360 (534)
Q Consensus 291 -------~~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i-~~ 360 (534)
...+|.++..+|.||..++ .++..+.. .|++.+++..|.+..+ ++..-.+.+|+||.-..+.+-..+ -+
T Consensus 357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHh
Confidence 2357899999999999977 56665554 8999999999988876 788888899999998555444444 46
Q ss_pred cCChHHHHHh-hcC--CchHHHHHHHHHHhhc--CccHHHHHh-cCcHHHHHHHHhcC----CHHHHHHHHHHHHHhcCC
Q 009471 361 EGGIRSLLAY-LDG--PLPQESAVGALRNLVG--SVSQEVLIS-LGFFPRLVHVLKAG----SLGAQQAAASALCRVCTS 430 (534)
Q Consensus 361 ~g~l~~L~~~-L~~--~~~~~~a~~aL~~La~--~~~~~~l~~-~~~i~~Lv~lL~~~----~~~v~~~A~~aL~~la~~ 430 (534)
.|.+..|..+ +++ .......+.+||||+. .++...|.. .|.+..|+.+|.-. ...+.+.|-++|.|++..
T Consensus 436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~ 515 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL 515 (2195)
T ss_pred hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence 7888888886 444 5678899999999998 566666655 78899999999533 457889999999998754
Q ss_pred ----hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHH
Q 009471 431 ----AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA 506 (534)
Q Consensus 431 ----~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~ 506 (534)
+++|+.+.+..++..|++.|++.+..+.-.++++||||....+.-.+++.+.|.|+.|..++++. ...+-..++.
T Consensus 516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaa 594 (2195)
T KOG2122|consen 516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAA 594 (2195)
T ss_pred hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHH
Confidence 78999999999999999999999999999999999999955444455556689999999999998 4478889999
Q ss_pred HHHhhchh
Q 009471 507 CLASLSPS 514 (534)
Q Consensus 507 ~L~~L~~~ 514 (534)
+|.||...
T Consensus 595 ALrNLln~ 602 (2195)
T KOG2122|consen 595 ALRNLLNF 602 (2195)
T ss_pred HHHHHhcC
Confidence 99999765
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.70 E-value=9.5e-14 Score=146.64 Aligned_cols=361 Identities=18% Similarity=0.170 Sum_probs=275.8
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
...+.+.+...|.+.++.+|.-++..+..++.+++.....+.+.+.++.++.++.+++..+...|+.+|..++..+...+
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 45566777888899999999999999999998888777778888999999999999999999999999999999888777
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE 310 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~ 310 (534)
.++..+.+..|..++...+..++.++..++.+++.. ++....+...|.++.++..+.++|.-++..++.+|..|+..++
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 888999999999999998888999999999999866 5556667778999999999999999999999999999999889
Q ss_pred HHHHHHhhCcHHHHHHHhhcCCCh----hH-HHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHH
Q 009471 311 VRQMLAEEGIVSVMIKLLDCGILL----GS-KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA 383 (534)
Q Consensus 311 ~~~~i~e~g~i~~L~~ll~~~~~~----~v-~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~a 383 (534)
+...+.+.|+++.+.+++.+.... .+ ....+...++++..++..- .-.-...+..+.+++++ +..+..|+.+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v-~~~~p~~~~~l~~~~~s~d~~~~~~A~dt 313 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV-LELYPAFLERLFSMLESQDPTIREVAFDT 313 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 999999999999999999644321 12 2233466677776422211 11112334455566554 6678999999
Q ss_pred HHHhhc-CccHHHH-Hhc-C----cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--h-------hHHHHHH---hcCchH
Q 009471 384 LRNLVG-SVSQEVL-ISL-G----FFPRLVHVLKAGSLGAQQAAASALCRVCTS--A-------EMKKLVG---EAGCTP 444 (534)
Q Consensus 384 L~~La~-~~~~~~l-~~~-~----~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~-------~~~~~i~---~~g~v~ 444 (534)
++.++. .+....+ ... + ++..+.....++..+++..+..++.++-.. + ...+.+. ..+...
T Consensus 314 lg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~ 393 (503)
T PF10508_consen 314 LGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLS 393 (503)
T ss_pred HHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchH
Confidence 999998 4555555 332 2 344555555677889999999999999432 2 1122222 223444
Q ss_pred -HHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHh-hcCCCC-chhHHHHHHHHHHhhch
Q 009471 445 -LLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ-LLDPSP-QNTAKKYAVACLASLSP 513 (534)
Q Consensus 445 -~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~-lL~~~~-~~~~k~~a~~~L~~L~~ 513 (534)
.++.+++.+-+++|..+...|..++.++.+.+.+....|.++.|+. -.+++. ..+.|...+.+|.+-..
T Consensus 394 ~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 394 NLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 7788888888999999999999999999999999988888777763 333332 23355566666664433
No 18
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.8e-14 Score=141.33 Aligned_cols=373 Identities=16% Similarity=0.157 Sum_probs=285.6
Q ss_pred hhchHHHHHHHHhcC--CHHH-HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471 152 THGNTRELLARLQIG--HLEA-KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~--~~~~-~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (534)
....+..+...++.- ..+. .+-|..-|.+++. +-+....++....|..||+.|+.++.++.......|-.|+-..+
T Consensus 258 Lk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e 336 (791)
T KOG1222|consen 258 LKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE 336 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc
Confidence 344455565555432 2233 3445556677765 34444566677899999999999999999999999999999999
Q ss_pred hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~ 308 (534)
++..+.+.|++..|+++....+++++......|.|++.+...+..+++.|.+|.|+.++.+.+. ...|+..|..++.+
T Consensus 337 NK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d 414 (791)
T KOG1222|consen 337 NKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD 414 (791)
T ss_pred chHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999976443 34578889999999
Q ss_pred chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCC-------------------------
Q 009471 309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGG------------------------- 363 (534)
Q Consensus 309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~------------------------- 363 (534)
++.+..+....+|+.+++.+-++...++-...+..--|++. +..+.+.+.+..+
T Consensus 415 D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSq 493 (791)
T KOG1222|consen 415 DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQ 493 (791)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhh
Confidence 99999999999999999988766654444444433345554 1111111112111
Q ss_pred ------------hHHHHHhhcC---CchHHHHHHHHHHhhcC--ccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHH
Q 009471 364 ------------IRSLLAYLDG---PLPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASAL 424 (534)
Q Consensus 364 ------------l~~L~~~L~~---~~~~~~a~~aL~~La~~--~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL 424 (534)
+..|..++.+ ...-..|+++++||..+ +-...+.+...+|.+-..|+.+ ..+++-....++
T Consensus 494 Heg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~ 573 (791)
T KOG1222|consen 494 HEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIAC 573 (791)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHh
Confidence 2222222322 22456788888888873 3445566789999999999765 357888888899
Q ss_pred HHhcCChhHHHHHHhcCchHHHHHhhcC--CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHH
Q 009471 425 CRVCTSAEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKK 502 (534)
Q Consensus 425 ~~la~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~ 502 (534)
+.+++...+...+..+|.++.|++++++ .+.+.......+...+..+...++..+++...-..|+.+++.. +.++|+
T Consensus 574 GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDk-N~eiRk 652 (791)
T KOG1222|consen 574 GTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDK-NAEIRK 652 (791)
T ss_pred hhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcc-cHHHHH
Confidence 9999999999999999999999999984 3455556666667777777777777888777778899999987 558999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhccccc
Q 009471 503 YAVACLASLSPSARKLLERLERGRLRS 529 (534)
Q Consensus 503 ~a~~~L~~L~~~~k~~~~~l~~~~~~~ 529 (534)
-+-.+|--++.+.+++.+++..+|||-
T Consensus 653 VCDn~LdIiae~d~EWAKrI~~EkFrw 679 (791)
T KOG1222|consen 653 VCDNALDIIAEHDKEWAKRIAGEKFRW 679 (791)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhhhccc
Confidence 999999999999999999999999873
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=2.2e-15 Score=163.19 Aligned_cols=317 Identities=18% Similarity=0.197 Sum_probs=250.0
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHH----------HHHhcCC------C-HHHHH-
Q 009471 156 TRELLARLQIG---HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAAL----------VQLLTAT------S-PRIRE- 214 (534)
Q Consensus 156 i~~Ll~~L~~~---~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~L----------v~lL~~~------~-~~v~~- 214 (534)
++.|+++|+-. +.+.+..|-.+|.++....++....=.+...+..| -.++... + .+=+.
T Consensus 237 LpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lc 316 (2195)
T KOG2122|consen 237 LPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLC 316 (2195)
T ss_pred hHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhH
Confidence 56677777643 45678889999999987655433211111222221 1222221 1 22333
Q ss_pred HHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc------------CCHHHHHHHHHHHHHhhcChhh-HHHHHh-CCCh
Q 009471 215 KTVTVICSLAESGSCENWLVSEGVLPPLIRLVES------------GSTVGKEKATISLQRLSMSAEM-ARAIVG-HGGV 280 (534)
Q Consensus 215 ~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~------------~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~-~g~i 280 (534)
.|+.+|..++.+++.|+.+.+.|++..+-+++.- ....++.+|..+|.||+..+.+ +..++. .|.+
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 6778888899999999999999999999998752 1345899999999999987654 666775 8899
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHH
Q 009471 281 RPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV 358 (534)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i 358 (534)
+.+|..|.+...++....+.+|+||+... ..++.+.+.|-+..|+...-....+......+.+|+||+.+...++..|
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 99999999888889999999999999844 5677777899999988876433333678899999999999888888888
Q ss_pred Hh-cCChHHHHHhhcC------CchHHHHHHHHHHhhc-----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009471 359 VS-EGGIRSLLAYLDG------PLPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426 (534)
Q Consensus 359 ~~-~g~l~~L~~~L~~------~~~~~~a~~aL~~La~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~ 426 (534)
.. .|.+.-|+..|.. -.+-+.+-++|+|.+. .+.++.+.+++.+..|+..|++.+-.+.-++|++|+|
T Consensus 477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN 556 (2195)
T KOG2122|consen 477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN 556 (2195)
T ss_pred hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence 74 6778888888854 2367899999999987 3455677789999999999999999999999999999
Q ss_pred hc-CChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q 009471 427 VC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472 (534)
Q Consensus 427 la-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 472 (534)
|+ ++++.++++++.|.++.|..++++++..+.+-++.+|.||....
T Consensus 557 LSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 557 LSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 98 67999999999999999999999999999999999999997654
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.2e-13 Score=149.29 Aligned_cols=454 Identities=17% Similarity=0.185 Sum_probs=301.8
Q ss_pred chhhHHHHHHhcccccccccc-CCCCCCCchhHHHHHHHHHHHHHHHH----HHH----HHhcCCCCCCcchhhhhhHhh
Q 009471 42 GRWKMIISKLEQIPSHLSDLS-SHPCFSKNALCREQLQAVSKTLKEAI----ELA----ELCVKEKYEGKLRMQSDLDAL 112 (534)
Q Consensus 42 ~~~~~i~~k~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~----~~c~~~~~~~~l~~~s~~~~~ 112 (534)
-.=..||.|++++.+.+..-- +. .|| ++++.+++++.+.. +.+ ..| +.+-| .+.+.++|.+
T Consensus 91 E~~~~vr~k~~dviAeia~~~l~e-~WP------ell~~L~q~~~S~~~~~rE~al~il~s~--~~~~~-~~~~~~~~~l 160 (1075)
T KOG2171|consen 91 ETEPSVRHKLADVIAEIARNDLPE-KWP------ELLQFLFQSTKSPNPSLRESALLILSSL--PETFG-NTLQPHLDDL 160 (1075)
T ss_pred ccchHHHHHHHHHHHHHHHhcccc-chH------HHHHHHHHHhcCCCcchhHHHHHHHHhh--hhhhc-cccchhHHHH
Confidence 334578999999999886544 33 699 88888888876432 111 111 01123 3445577778
Q ss_pred hchhhhhhhchhhHHhhCCCCCCCcccccCCCCchhhhhhhchHHHHHHHH----hcCCHHHHHHHHHHHHHHhhcChHh
Q 009471 113 SGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARL----QIGHLEAKHKALDSLVEAMKEDEKN 188 (534)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~l~~~~~~v~~~p~~~a~~~~~~~~i~~Ll~~L----~~~~~~~~~~A~~~L~~l~~~~~~~ 188 (534)
...|...+.|.+.-+|+-.++.-.+.....+........++..+|.++..+ +.|+.+.-..++..|.+++...++.
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 888888887777666654442222222222222233344566777777655 4677777889999999999888877
Q ss_pred HHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCc--hhH-HHHhcCCHHHHHHHHccCC-------------
Q 009471 189 VLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS--CEN-WLVSEGVLPPLIRLVESGS------------- 250 (534)
Q Consensus 189 ~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~--~~~-~l~~~g~i~~Lv~lL~~~~------------- 250 (534)
.+..++ ..+...++..++.+ ..+|..|+.+|..+++..+ +|. ...-...++.++.++.+..
T Consensus 241 l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~de 319 (1075)
T KOG2171|consen 241 LRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDE 319 (1075)
T ss_pred HHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccc
Confidence 666554 56777777777764 8999999999999999865 221 1122235566666654321
Q ss_pred ---HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHH
Q 009471 251 ---TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMI 325 (534)
Q Consensus 251 ---~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~ 325 (534)
..-...|..+|-.++.+-..+..+ .-.++.+-.++++.++.-|.+++.+|..++.+.. +.|.. ..+++.++
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGCS--DVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHH
Confidence 113456777777777653322211 1124677788999999999999999999987642 22222 67888899
Q ss_pred HHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHHHHHh--cC
Q 009471 326 KLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVLIS--LG 400 (534)
Q Consensus 326 ~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~~l~~--~~ 400 (534)
..+.++++ .||+.|+.++++++.+....-+...++..++.|+..+++ +.++.+|+.++.|+........+.. .+
T Consensus 396 ~~l~Dphp-rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~ 474 (1075)
T KOG2171|consen 396 NGLNDPHP-RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG 474 (1075)
T ss_pred hhcCCCCH-HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 99999998 899999999999998766555566777888899999977 5689999999999987433333322 34
Q ss_pred cHH-HHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCC----hHHHHHHHHHHHHhcCCCc
Q 009471 401 FFP-RLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKP----NSVREVAAQAISSLVTLPQ 473 (534)
Q Consensus 401 ~i~-~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~----~~v~~~A~~aL~~L~~~~~ 473 (534)
++. .+..+++++.+.+++.++.+|+..|.. .++.+++ ...+|.|.+.++..+ ..+|....+++.-++ ...
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AV 551 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAV 551 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHh
Confidence 555 344455788899999999999999854 5666776 557999999998544 456777778887664 444
Q ss_pred chHHHHhhCC-CHHHHHhhcCC--CCchhHHHHHHHHHHhhchh
Q 009471 474 NCREVKRDDK-SVPNLVQLLDP--SPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 474 ~~~~~~~~~~-~v~~Lv~lL~~--~~~~~~k~~a~~~L~~L~~~ 514 (534)
+++.|..... .+..+..+-.+ +.+...+.|-.....++|+.
T Consensus 552 Gke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 552 GKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred hhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH
Confidence 5455544322 22222222111 12234678888888888766
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.59 E-value=3.8e-13 Score=130.65 Aligned_cols=319 Identities=11% Similarity=0.074 Sum_probs=243.3
Q ss_pred hcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHccC-------CHHHHHHHHHHHHHh
Q 009471 193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRL 264 (534)
Q Consensus 193 ~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~L 264 (534)
++.+.++.|.+..++++.++-++..++|+|+|.++ ++|..+.+.|+-..++++|+.. +.+....++..|.|-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 45578888999999999999999999999999977 4999999999988888888752 234555677778887
Q ss_pred hcC-hhhHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHccCCc-h-HHHHHHhhCcHHHHHHHhhcCCChhHHHH
Q 009471 265 SMS-AEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVP-E-VRQMLAEEGIVSVMIKLLDCGILLGSKEY 339 (534)
Q Consensus 265 s~~-~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~-~-~~~~i~e~g~i~~L~~ll~~~~~~~v~~~ 339 (534)
... ++.+....+.|.++.|...+.- .+....+.......||.+.. + ......+......+++++.+...++..+.
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 655 5557788899999999888653 23444455555555655422 2 34445567788889999976665578999
Q ss_pred HHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-Cc--hHHH-------HHHHHHHhhc-CccHHHHHhcC-cHHHHHH
Q 009471 340 AAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PL--PQES-------AVGALRNLVG-SVSQEVLISLG-FFPRLVH 407 (534)
Q Consensus 340 a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~--~~~~-------a~~aL~~La~-~~~~~~l~~~~-~i~~Lv~ 407 (534)
+...+...+. ++..+-.+.+.|.++.+++++++ +. -.+. ++....-|.. .++-+.+.+.+ ++..++.
T Consensus 244 ~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 244 IFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 9999998886 66777788899999999999876 21 1222 2333333333 44555666666 8999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-----CCChHHHHHHHHHHHHhcCCCcchHHHHhhC
Q 009471 408 VLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLVTLPQNCREVKRDD 482 (534)
Q Consensus 408 lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~ 482 (534)
.+++.+...+..+.-+|+|+++.++++..+.+.|++..|++++. +++.+++..++.+|.+++--.+|+..+.. .
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~-a 401 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP-A 401 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc-c
Confidence 99999999999999999999999999999999999999999985 45688899999999999988899888887 6
Q ss_pred CCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 483 KSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 483 ~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
|.+..++..++... +.+...-...+..+-.+
T Consensus 402 GvteaIL~~lk~~~-ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 402 GVTEAILLQLKLAS-PPVTFKLLGTLRMIRDS 432 (604)
T ss_pred chHHHHHHHHHhcC-CcchHHHHHHHHHHHhc
Confidence 88888888887652 24555555566555555
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=3.9e-13 Score=127.89 Aligned_cols=192 Identities=21% Similarity=0.244 Sum_probs=164.8
Q ss_pred HhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh
Q 009471 192 VMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM 270 (534)
Q Consensus 192 i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 270 (534)
+.+.+.++.|+.+|+.. ++.+++.+..++++.+.++.+++.+.+.|+++.+..+|.++++.+++.|.++|.|++.+.++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 35667899999999964 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471 271 ARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (534)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La 348 (534)
+..+-. .++.+++...+ -+..+|..++++|.||+..++.+..+.. .++.++.++..|+. .++.+++.+|.||+
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~-~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSE-KTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCCh-HHHHHHHHHHHHhc
Confidence 887643 35555554333 3778999999999999988877777754 69999999999997 89999999999999
Q ss_pred cCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc
Q 009471 349 ASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG 389 (534)
Q Consensus 349 ~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~ 389 (534)
. ++...+.++..+++..++.+++. .+....++..+.|+..
T Consensus 163 ~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 163 E-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred c-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 8 56666678888899999999976 4567788888888865
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.56 E-value=9.4e-13 Score=127.92 Aligned_cols=365 Identities=15% Similarity=0.085 Sum_probs=268.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC----CC---HHHHHHHHHHHHHhhcCCc-h
Q 009471 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA----TS---PRIREKTVTVICSLAESGS-C 229 (534)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~----~~---~~v~~~A~~~L~~La~~~~-~ 229 (534)
.|.+...+.+.+.-.+..++|.+++.++.+++..+.+.||-..++++|+. .+ .+.-..+...|.|..-+.+ .
T Consensus 91 ~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l 170 (604)
T KOG4500|consen 91 LLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSREL 170 (604)
T ss_pred HHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHH
Confidence 33334456778999999999999999999999999999997777777764 22 3455566677777776654 8
Q ss_pred hHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhc-ChhhHH-HHHhCCChHHHHHHHcc-CChHHHHHHHHHHHH
Q 009471 230 ENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSM-SAEMAR-AIVGHGGVRPLIEICQT-GDSVSQAAAACTLKN 304 (534)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~-~~~~~~-~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~n 304 (534)
+..+.+.|+++.|..++.-+ +....+.......+|.. ..++.. ...+......+++++.. -.++....+...|..
T Consensus 171 ~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~ 250 (604)
T KOG4500|consen 171 RAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAK 250 (604)
T ss_pred HHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHH
Confidence 89999999999999888654 55555555444444432 223322 23345556667777764 356778889999999
Q ss_pred ccCCchHHHHHHhhCcHHHHHHHhhcCCChh-------HHHHHHHHHHHHccCChHHHHHHHhcC-ChHHHHHhhcC--C
Q 009471 305 ISAVPEVRQMLAEEGIVSVMIKLLDCGILLG-------SKEYAAECLQNLTASNENLRRSVVSEG-GIRSLLAYLDG--P 374 (534)
Q Consensus 305 La~~~~~~~~i~e~g~i~~L~~ll~~~~~~~-------v~~~a~~~L~~La~~~~~~~~~i~~~g-~l~~L~~~L~~--~ 374 (534)
.+.++..+-.+++.|.+..++++++.-.... .-..++....-+..+++..+ .++..+ .++-+...+++ .
T Consensus 251 ~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~d~ 329 (604)
T KOG4500|consen 251 AAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSDDS 329 (604)
T ss_pred HhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCCch
Confidence 9999999999999999999999997622111 22334555555555666654 444444 67777777765 4
Q ss_pred chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHH
Q 009471 375 LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLK-----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIK 448 (534)
Q Consensus 375 ~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~-----~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ 448 (534)
..+..+.-+|+|+++ ....-.+++.+++..|+.++. .++..+|..++.+|+|+.-..-++..+..+|..+.+..
T Consensus 330 ~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~ 409 (604)
T KOG4500|consen 330 NLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILL 409 (604)
T ss_pred hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHH
Confidence 567888889999999 667788999999999999984 34678999999999999998888999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCCc-chHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh--HHHHHHHHh
Q 009471 449 LLEAKPNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS--ARKLLERLE 523 (534)
Q Consensus 449 ll~~~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~--~k~~~~~l~ 523 (534)
+++...|.++..-...+.-+....+ -..++.+.-..+..|+..-.+++-..+.......+.-+..+ .|++..-+.
T Consensus 410 ~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvp 487 (604)
T KOG4500|consen 410 QLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVP 487 (604)
T ss_pred HHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcc
Confidence 9999889999999998888764444 45566665566777787777765444666677777777777 344444444
No 24
>PRK09687 putative lyase; Provisional
Probab=99.54 E-value=1.6e-12 Score=126.52 Aligned_cols=253 Identities=18% Similarity=0.088 Sum_probs=197.1
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~ 275 (534)
--++.|..+|.+++..+|..|+.+|..+.. ..+++.+..+++++++.++..|+++|..|...+....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~--- 89 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQD--- 89 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchH---
Confidence 458899999999999999999999987753 2357888899999999999999999999976433211
Q ss_pred hCCChHHHHHH-HccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471 276 GHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (534)
Q Consensus 276 ~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (534)
..++.|..+ +.++++.++..++.+|.++....... ...++..+...+.+.+. .++..++.+|+.+.. +
T Consensus 90 --~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~-~VR~~a~~aLg~~~~--~-- 158 (280)
T PRK09687 90 --NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKST-NVRFAVAFALSVIND--E-- 158 (280)
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCH-HHHHHHHHHHhccCC--H--
Confidence 123777766 67889999999999999986532111 12345567677777776 899999999987653 2
Q ss_pred HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChh
Q 009471 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE 432 (534)
Q Consensus 355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~ 432 (534)
..++.|+.++++ +.++..|+.+|+.+... ....++.|+.++.+.+..|+..|+++|.++..
T Consensus 159 -------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--- 221 (280)
T PRK09687 159 -------AAIPLLINLLKDPNGDVRNWAAFALNSNKYD-------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--- 221 (280)
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---
Confidence 247889999976 67899999999998431 12467889999999999999999999998653
Q ss_pred HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHH
Q 009471 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA 509 (534)
Q Consensus 433 ~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~ 509 (534)
..++|.|++.+++++ ++..++.+|..+.. ...++.|.++++.+++..++..+..+|-
T Consensus 222 -------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 -------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 256999999998765 67889999999832 2568999999986656678888887764
No 25
>PRK09687 putative lyase; Provisional
Probab=99.51 E-value=7.2e-12 Score=121.90 Aligned_cols=252 Identities=18% Similarity=0.149 Sum_probs=198.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
.+..|+..|.+.+..++..|+..|..+- +...++.+..+++++++.+|..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 4788899999999999999999987763 124577788899999999999999999999764422
Q ss_pred hcCCHHHHHHH-HccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHH
Q 009471 235 SEGVLPPLIRL-VESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313 (534)
Q Consensus 235 ~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (534)
....++.|..+ +++.++.++..|+.+|.++....... ....+..+...+.++++.+|..++.+|.++..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 12347778776 67789999999999999986432211 01123567777888999999999999976542
Q ss_pred HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCc
Q 009471 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSV 391 (534)
Q Consensus 314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~ 391 (534)
..+++.|+.++.+.+. .++..|+.+|+.+...++. .++.|+..+++ +.++..|+.+|+.+-.
T Consensus 158 ----~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 158 ----EAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred ----HHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 4478999999998887 8999999999999544442 36778888876 6799999999988653
Q ss_pred cHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHH
Q 009471 392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISS 467 (534)
Q Consensus 392 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~ 467 (534)
...++.|++.+++++ ++..++.+|+++... ..+|.|.++++ +++..++..|.++|..
T Consensus 222 -------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 222 -------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 357899999998876 677899999998753 46899999997 8899999999998853
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.46 E-value=2.8e-11 Score=136.88 Aligned_cols=273 Identities=21% Similarity=0.151 Sum_probs=211.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
.++.|+..|.+.++.+|..|+..|..+. ..+.++.|+.+|+++++.+|..|+.+|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------ 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------ 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------
Confidence 4567888888999999999998888763 23568899999999999999999999988854322
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHH
Q 009471 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (534)
..+.+...|++.++.++..|+.+|..+... ....|+..|.++++.+|..|+.+|..+..
T Consensus 685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~------- 743 (897)
T PRK13800 685 ---PAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVDD------- 743 (897)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence 135777889999999999999999887532 23457788999999999999999987532
Q ss_pred HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCcc
Q 009471 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVS 392 (534)
Q Consensus 315 i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~ 392 (534)
.+.+..++.+++. .+|..++.+|..+..... ..++.|..++++ +.+|..|+.+|+.+..+
T Consensus 744 ------~~~l~~~l~D~~~-~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-- 805 (897)
T PRK13800 744 ------VESVAGAATDENR-EVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCP-- 805 (897)
T ss_pred ------cHHHHHHhcCCCH-HHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--
Confidence 2346677888876 899999999999875322 226778888876 56899999999988652
Q ss_pred HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q 009471 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472 (534)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 472 (534)
...+..+...|.+.++.|+..|+.+|..+.. ...++.|+.++.+++..||..|..+|..+.. .
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-~ 868 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-D 868 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-C
Confidence 1134668888999999999999999998753 2457999999999999999999999998721 1
Q ss_pred cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHh
Q 009471 473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS 510 (534)
Q Consensus 473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~ 510 (534)
+ ...+.|...++.+ +..++..|..+|.+
T Consensus 869 ~---------~a~~~L~~al~D~-d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 869 P---------AARDALTTALTDS-DADVRAYARRALAH 896 (897)
T ss_pred H---------HHHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence 1 2345666777765 55799999988864
No 27
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.45 E-value=1.1e-10 Score=118.21 Aligned_cols=318 Identities=15% Similarity=0.128 Sum_probs=235.6
Q ss_pred hchHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcChHhHHHHhcC-----CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471 153 HGNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-----SNIAALVQLLTATSPRIREKTVTVICSLAES 226 (534)
Q Consensus 153 ~~~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~-----g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~ 226 (534)
..++..++..++ +.+++.....+.-+.+++.+++.....+.+. +...+++.+|..+|..+...|..+|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 345666777775 4567778888888888888888766666653 5678888999999999999999999999765
Q ss_pred Cchh-HHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC--ChHHHHHHHHHH
Q 009471 227 GSCE-NWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DSVSQAAAACTL 302 (534)
Q Consensus 227 ~~~~-~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL 302 (534)
.... ......-.++.+...+++. +...+..++.+|..|...++.+..+.+.+|++.|+.+++.. +...+..++-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4311 1111111334555666654 56778889999999999999999999999999999999763 457789999999
Q ss_pred HHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC------hHHHHHHHhcCChHHHHHhhcC---
Q 009471 303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN------ENLRRSVVSEGGIRSLLAYLDG--- 373 (534)
Q Consensus 303 ~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~------~~~~~~i~~~g~l~~L~~~L~~--- 373 (534)
|-|+..++....+.+.+.++.++++++....+.+.+-++.+|.|+...+ ......+++.|.. ++++.|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLEQRKY 290 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHhcCCC
Confidence 9999988877777778999999999987776688999999999999843 1233455555554 45555432
Q ss_pred --CchH-------HHHHHHHHHhhc----------------C---------ccHHHHHhcC--cHHHHHHHHh-cCCHHH
Q 009471 374 --PLPQ-------ESAVGALRNLVG----------------S---------VSQEVLISLG--FFPRLVHVLK-AGSLGA 416 (534)
Q Consensus 374 --~~~~-------~~a~~aL~~La~----------------~---------~~~~~l~~~~--~i~~Lv~lL~-~~~~~v 416 (534)
+++. +.--.-+..+++ + ++...+-+.+ .+..|+++|. +.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 2221 111122222221 0 2233454444 3788999994 667888
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 417 QQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 417 ~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
..-||.=|+.+++. |..+..+.+.|+=..+++++.+++++++..|+.++..|..+
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999975 88999998899999999999999999999999999887543
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1e-10 Score=115.36 Aligned_cols=363 Identities=15% Similarity=0.157 Sum_probs=256.2
Q ss_pred hhhhHhhhchhhhhhhchhhHHhhCCCCCCCcccccCCCCchh--hhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 009471 106 QSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDA--EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMK 183 (534)
Q Consensus 106 ~s~~~~~~~~l~~~~~~~~~~~~~g~l~~~~~~v~~~p~~~a~--~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~ 183 (534)
..+.|.+..++...+..-..+++.... .+.-......- +.-....|.-|+..|...+.+...-...-|..+.-
T Consensus 259 k~e~dr~~kklk~~~~KQeqLLrva~y-----lLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI 333 (791)
T KOG1222|consen 259 KEEIDRLNKKLKTAIRKQEQLLRVAVY-----LLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI 333 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence 456677777776666655555554321 11111111111 22234578888888888876666555555555543
Q ss_pred cChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 009471 184 EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR 263 (534)
Q Consensus 184 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~ 263 (534)
-.+++..+.+.|.|+.|+++....+++++...+..+.+++.+...+..++..|.+|.+..+|.+... ...|...|+.
T Consensus 334 -f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh 410 (791)
T KOG1222|consen 334 -FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYH 410 (791)
T ss_pred -hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhh
Confidence 3346667778899999999999999999999999999999999999999999999999999987643 4567889999
Q ss_pred hhcChhhHHHHHhCCChHHHHHHHccC-ChHHH--------------------------------------HHHHHHHHH
Q 009471 264 LSMSAEMARAIVGHGGVRPLIEICQTG-DSVSQ--------------------------------------AAAACTLKN 304 (534)
Q Consensus 264 Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~--------------------------------------~~a~~aL~n 304 (534)
++.+++.+..+....+|+.+++.+-.+ +.++- ..-...++|
T Consensus 411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRn 490 (791)
T KOG1222|consen 411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRN 490 (791)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHH
Confidence 999988888787778888777654322 11110 123456677
Q ss_pred ccCCch-HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHH
Q 009471 305 ISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQES 379 (534)
Q Consensus 305 La~~~~-~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~ 379 (534)
++..+. .+..+++ .+..|...+...++++....|+++++|++..+-.-...+-+...+|.+-+.|.. ++.+-.
T Consensus 491 iSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~ 568 (791)
T KOG1222|consen 491 ISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQ 568 (791)
T ss_pred hhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhH
Confidence 777653 4444444 255666666665554567778888888887555555555678889999888864 456666
Q ss_pred HHHHHHHhhcC-ccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCChhHHHHHHhcC-chHHHHHhhcCCCh
Q 009471 380 AVGALRNLVGS-VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSAEMKKLVGEAG-CTPLLIKLLEAKPN 455 (534)
Q Consensus 380 a~~aL~~La~~-~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~~~~~~~i~~~g-~v~~Lv~ll~~~~~ 455 (534)
.+-+++.++.. .+...+...++++.|+++|+.. +.+...+...+...+..++-.++.++... .-..|++++++++.
T Consensus 569 ~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 569 IVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred HHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccH
Confidence 77777888874 4445555688999999999754 56777777888888888877788776654 55689999999999
Q ss_pred HHHHHHHHHHHHhcCC-CcchHHH
Q 009471 456 SVREVAAQAISSLVTL-PQNCREV 478 (534)
Q Consensus 456 ~v~~~A~~aL~~L~~~-~~~~~~~ 478 (534)
++|+..-.+|--++.+ .+-.+.+
T Consensus 649 eiRkVCDn~LdIiae~d~EWAKrI 672 (791)
T KOG1222|consen 649 EIRKVCDNALDIIAEHDKEWAKRI 672 (791)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999888854 3444444
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.43 E-value=1.1e-11 Score=117.85 Aligned_cols=193 Identities=18% Similarity=0.220 Sum_probs=165.8
Q ss_pred HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-Ccc
Q 009471 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVS 392 (534)
Q Consensus 316 ~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~ 392 (534)
.+.+-++.|+.+|+...++.+++.++.++.+.+. ++.++..+.+.|+++.+..++++ +.+++.|+.+|.|++. .++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4567789999999866555899999999999876 77889999999999999999987 5689999999999998 455
Q ss_pred HHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 393 QEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
...+-. .++.+++.+.+. +..+|..++++|.+|+...+++..+. ++++.++.++..++..++..++.+|.+|+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 555432 578888766544 57999999999999998888877774 479999999999999999999999999999
Q ss_pred CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+...++++. .+.+..++.+++.+...++-..++..+.|+..+
T Consensus 164 np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred CHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999988 478899999999986667888999999999877
No 30
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.32 E-value=2.8e-10 Score=116.64 Aligned_cols=365 Identities=15% Similarity=0.104 Sum_probs=228.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCc-hhHHH
Q 009471 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS-CENWL 233 (534)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~-~~~~l 233 (534)
..++..+...+++....|..-..+++.+.++.+..+++.|.++.|+.++...+ ++.+...+.++..+...++ ....+
T Consensus 12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 45677788889999999999999998877777777889999999999998765 6777666677777766554 77888
Q ss_pred HhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhhcChhhHHHHH---hCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471 234 VSEGVLPPLIRLVESGS-TVGKEKATISLQRLSMSAEMARAIV---GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~-~~~~~~A~~~L~~Ls~~~~~~~~l~---~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (534)
.+.+.++.|+++|.+.+ ..+++...+++..+....+...... ....+..+..+...+.......-+....+++..+
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence 89999999999999988 7899999999999976654332211 1222333333332122222222222222222222
Q ss_pred hHHHHHHhhCcHHHH------------------------------------HHHh---------------hcCCChhHHH
Q 009471 310 EVRQMLAEEGIVSVM------------------------------------IKLL---------------DCGILLGSKE 338 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L------------------------------------~~ll---------------~~~~~~~v~~ 338 (534)
+.+..+.+.|+.+.+ +.++ ++++. ..+.
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~-s~~l 250 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF-SERL 250 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc-cHHH
Confidence 222222222222222 2222 12222 3344
Q ss_pred HHHHHHHHHccCC-------------hHHHHHHH--------------------------------------hcCChHHH
Q 009471 339 YAAECLQNLTASN-------------ENLRRSVV--------------------------------------SEGGIRSL 367 (534)
Q Consensus 339 ~a~~~L~~La~~~-------------~~~~~~i~--------------------------------------~~g~l~~L 367 (534)
.++.++.++...+ +..-..+. ++..++.+
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 4555555544322 00000000 00011111
Q ss_pred HHhh------------------------------------------------------cCCchHHHHHHHHHHhhcC--c
Q 009471 368 LAYL------------------------------------------------------DGPLPQESAVGALRNLVGS--V 391 (534)
Q Consensus 368 ~~~L------------------------------------------------------~~~~~~~~a~~aL~~La~~--~ 391 (534)
.+++ .+.+....++-++.++++. .
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0001122333333333331 0
Q ss_pred cHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 392 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
-+..+-...++.+|++++..++..++..+.++|+|+.-. ...+..+.+.|||..+.+++.+.++.++..+.++|+++.-
T Consensus 411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 111122356789999999889999999999999999954 8889999999999999999999999999999999999985
Q ss_pred CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHH
Q 009471 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERL 522 (534)
Q Consensus 471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l 522 (534)
...+-..+.-..+.-..++..+-.+++-.+++++...|.||+-+.++.++-+
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfl 542 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFL 542 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 5544444333345556666666666677899999999999998866666554
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.30 E-value=7.8e-10 Score=125.23 Aligned_cols=246 Identities=20% Similarity=0.172 Sum_probs=194.7
Q ss_pred cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009471 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA 273 (534)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 273 (534)
+...++.|+..|+++++.+|..|+..|..+.. .+.++.|+..|++.+..++..|+.+|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 33568899999999999999999999998752 3458999999999999999999999988853221
Q ss_pred HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
..+.|...+.++++.+|..++.+|..+... -...++..+.+.+. .++..|+.+|..+-.
T Consensus 685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~---- 743 (897)
T PRK13800 685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDH-RVRIEAVRALVSVDD---- 743 (897)
T ss_pred -----chHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCH-HHHHHHHHHHhcccC----
Confidence 125677888899999999999999876532 13456778888887 899999999988632
Q ss_pred HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh
Q 009471 354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA 431 (534)
Q Consensus 354 ~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~ 431 (534)
.+.|...+.+ +.+|..++.+|..+.... ...++.|..++++.++.|+..|+.+|.++...+
T Consensus 744 ----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 744 ----------VESVAGAATDENREVRIAVAKGLATLGAGG-------APAGDAVRALTGDPDPLVRAAALAALAELGCPP 806 (897)
T ss_pred ----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Confidence 2345667765 678999999999987531 223788999999999999999999999986541
Q ss_pred hHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhh
Q 009471 432 EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL 511 (534)
Q Consensus 432 ~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L 511 (534)
..++.++..+.+.++.+|..|+.+|..+. ....++.|+.+|++. +..+|..|+.+|..+
T Consensus 807 ---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 807 ---------DDVAAATAALRASAWQVRQGAARALAGAA-----------ADVAVPALVEALTDP-HLDVRKAAVLALTRW 865 (897)
T ss_pred ---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCC-CHHHHHHHHHHHhcc
Confidence 22456788899999999999999998763 234568899999776 557999999999997
Q ss_pred c
Q 009471 512 S 512 (534)
Q Consensus 512 ~ 512 (534)
.
T Consensus 866 ~ 866 (897)
T PRK13800 866 P 866 (897)
T ss_pred C
Confidence 3
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.29 E-value=7.9e-11 Score=99.73 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=106.3
Q ss_pred HhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh
Q 009471 192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM 270 (534)
Q Consensus 192 i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 270 (534)
+++.|+++.++++++++++.++..++.+|.+++.+ ++.+..+++.|+++.++.+|.++++.++..++++|++++.+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999998 45888888999999999999999999999999999999988644
Q ss_pred -HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 271 -ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 271 -~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
...+...|+++.|++++.+.+..++..++++|+||+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 5567789999999999999999999999999999873
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.28 E-value=8.9e-11 Score=99.41 Aligned_cols=117 Identities=27% Similarity=0.414 Sum_probs=107.1
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP- 309 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~- 309 (534)
.+++.|+++.++.+|.++++.+++.++++|.+++.+ ++....+.+.|+++.++.++.++++.++..++++|+|++.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467889999999999999999999999999999988 677888888999999999999999999999999999999976
Q ss_pred hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
.....+.+.|+++.+++++.+++. .+++.++.+|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~-~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCH-HHHHHHHHHHHHhhC
Confidence 567777889999999999998876 899999999999873
No 34
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.7e-09 Score=111.72 Aligned_cols=359 Identities=20% Similarity=0.262 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHHhhcChHhHHHHhc----CCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHH
Q 009471 170 AKHKALDSLVEAMKEDEKNVLAVMG----RSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR 244 (534)
Q Consensus 170 ~~~~A~~~L~~l~~~~~~~~~~i~~----~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~ 244 (534)
...-++.+|.++...+|+-...+-. .|..+.+...+.. .++.++..|+.++..+..+.++...++..|++..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 4566888999999888854332221 2667777777765 5689999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHH-HccCChHHHHHHHHHHHHccCCc--hHHHHH------
Q 009471 245 LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAVP--EVRQML------ 315 (534)
Q Consensus 245 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~~--~~~~~i------ 315 (534)
+|.+. +..++.+..+|+.|+.+.+..+.-.++||+..+..+ |.+.++..|..++..+..|..++ .-+..|
T Consensus 1821 lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred HHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 99875 567999999999999999999988899998888765 66778888999999999998754 212111
Q ss_pred -------HhhCcHHHHHHHhhcC--CCh-----hHHHHHHHHHHHHccC-------------------------------
Q 009471 316 -------AEEGIVSVMIKLLDCG--ILL-----GSKEYAAECLQNLTAS------------------------------- 350 (534)
Q Consensus 316 -------~e~g~i~~L~~ll~~~--~~~-----~v~~~a~~~L~~La~~------------------------------- 350 (534)
...|- ...+..++.. +++ ..+......+..++..
T Consensus 1900 P~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1900 PEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred hHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence 11221 3444555322 110 1222333334444320
Q ss_pred -ChHHHHHHHh------------cCChHHHHHhhcC--C--chHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhc
Q 009471 351 -NENLRRSVVS------------EGGIRSLLAYLDG--P--LPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA 411 (534)
Q Consensus 351 -~~~~~~~i~~------------~g~l~~L~~~L~~--~--~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~ 411 (534)
...+|..+.+ .+.+++++.++.. | ...+.-..++..|.+ +.-.+.+-..|.+|.++..+..
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence 0011211111 2334555555532 2 233444555666665 4555667778999999999987
Q ss_pred CCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHH---hhCCCHHHH
Q 009471 412 GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK---RDDKSVPNL 488 (534)
Q Consensus 412 ~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~---~~~~~v~~L 488 (534)
.+..+-..|++.|..|+.+.-+.++|....++..++..+.. ......-|+++|..+.. .++.+++ -..|.++.|
T Consensus 2059 ~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~--r~~~eLVAQ~LK~gLvpyL 2135 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMK--RNTGELVAQMLKCGLVPYL 2135 (2235)
T ss_pred cCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHH--HhHHHHHHHHhccCcHHHH
Confidence 77677789999999999999999999888888888888873 45566789999998875 3333333 257999999
Q ss_pred HhhcCCCC------chhHHHHHHHHHHhhchh---HHHHHHHHhhccccccccC
Q 009471 489 VQLLDPSP------QNTAKKYAVACLASLSPS---ARKLLERLERGRLRSFFSR 533 (534)
Q Consensus 489 v~lL~~~~------~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~~~~~~~~~ 533 (534)
+++|+... ....+.....+|...... ..+..|.|.++-.||-|+.
T Consensus 2136 L~LLd~~tL~~~~~~aas~A~Iv~aLk~~~~~l~vg~kV~EILd~S~VWSAfKD 2189 (2235)
T KOG1789|consen 2136 LQLLDSSTLNGVSNGAAARAEIVDALKSAILDLKVGQKVAEILDKSPVWSAFKD 2189 (2235)
T ss_pred HHHhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Confidence 99998642 223455556666666555 7889999999999998864
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.3e-10 Score=114.94 Aligned_cols=425 Identities=16% Similarity=0.126 Sum_probs=262.0
Q ss_pred cccccchHHHHHHHHHHhHHHHHhhhcccCccchhhHHHHHHhccccccccccCCCCCCCchh--HHHHHHHHHHHHHHH
Q 009471 10 LANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNAL--CREQLQAVSKTLKEA 87 (534)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~k~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~ 87 (534)
+..|++-++.|++..+++..-.+--.+++ .....|++++.. +|+|...=. +-+.-..-..| +.+
T Consensus 2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~~~------~~~~~~leq~~~-------~pdfnnYL~~IL~~~~~~d~~~-Rs~ 67 (885)
T KOG2023|consen 2 AMTWQPDEQGLQQLAQLLKNSQSPNSETR------NNVQEKLEQFNL-------FPDFNNYLIYILIRAKSEDVPT-RSL 67 (885)
T ss_pred CCCCcccHHHHHHHHHHHHhccCCChHHH------HHHHHHHHHHhc-------ccchhceeeEEEecccccchhH-HHH
Confidence 34678889998887777655433322221 234455555543 454442211 01111111111 222
Q ss_pred HHHHHHhcCCCCCC--cchhhhhhHhhhchhhhhhhchhhHHhh--CCCCCCCcccccCCCCchhhhhhhchHHHHHHHH
Q 009471 88 IELAELCVKEKYEG--KLRMQSDLDALSGKLDLNLHDCGLLIKT--GVLGEATLPLSVAGSSTDAEATTHGNTRELLARL 163 (534)
Q Consensus 88 ~~l~~~c~~~~~~~--~l~~~s~~~~~~~~l~~~~~~~~~~~~~--g~l~~~~~~v~~~p~~~a~~~~~~~~i~~Ll~~L 163 (534)
..|--|- +..| ....+.+++-+.+..-..++|.+.++|. |++- ..++ +.. ....-...++.|...|
T Consensus 68 aGLlLKN---nvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivI--TTI~-s~~----~~~~wpelLp~L~~~L 137 (885)
T KOG2023|consen 68 AGLLLKN---NVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVI--TTIA-STG----GLQHWPELLPQLCELL 137 (885)
T ss_pred hhhhHhc---cccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhhee--eeee-ccc----ccccchhHHHHHHHHh
Confidence 2333222 2211 1233457778888888889998888873 2220 0111 111 1111244678888889
Q ss_pred hcCCHHHHHHHHHHHHHHhhcChHhHHHHh-cC---CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCH
Q 009471 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVM-GR---SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL 239 (534)
Q Consensus 164 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~-~~---g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i 239 (534)
.+.+.....-|..+|.+++.++.+....-+ .. -.+|.++++.+++++.+|..|+.++..+.-....--...-...+
T Consensus 138 ~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fl 217 (885)
T KOG2023|consen 138 DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFL 217 (885)
T ss_pred cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence 888888899999999999987665433211 11 24899999999999999999999998886654321111112346
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--
Q 009471 240 PPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-- 317 (534)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e-- 317 (534)
..+..+-.+.++++|...|.+|..|......+-.-.-.+.++.++..-++.|..+-..||.....++..+-.+..+..
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l 297 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL 297 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH
Confidence 777777788999999999999999876433222111256678888888888999999999999999998844443333
Q ss_pred hCcHHHHHHHhhcCC-C------------------------------------------------------hhHHHHHHH
Q 009471 318 EGIVSVMIKLLDCGI-L------------------------------------------------------LGSKEYAAE 342 (534)
Q Consensus 318 ~g~i~~L~~ll~~~~-~------------------------------------------------------~~v~~~a~~ 342 (534)
...+|.|++-+...+ + -..|..++.
T Consensus 298 ~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAA 377 (885)
T KOG2023|consen 298 DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAA 377 (885)
T ss_pred HHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHH
Confidence 456666664332111 0 013333444
Q ss_pred HHHHHccCChHHHHHHHhcCChHHHHHhhcC------CchHHHHHHHHHHhhcCccHHHHHh--cCcHHHHHHHHhcCCH
Q 009471 343 CLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVGSVSQEVLIS--LGFFPRLVHVLKAGSL 414 (534)
Q Consensus 343 ~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~------~~~~~~a~~aL~~La~~~~~~~l~~--~~~i~~Lv~lL~~~~~ 414 (534)
+|--++. ++....++.++.+++. -.+++.++-+++.++.. +-+-++. ...+|.|+.+|.++.+
T Consensus 378 aLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkp 448 (885)
T KOG2023|consen 378 ALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKP 448 (885)
T ss_pred HHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCcc
Confidence 4444432 2334456666666643 24789999999999872 1111222 2468899999999999
Q ss_pred HHHHHHHHHHHHhcCC---hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 415 GAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 415 ~v~~~A~~aL~~la~~---~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
-|+..+||+|.+.+.. .+..+.+ ...+..|++.+-+++..||++|+.+...+-
T Consensus 449 lVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 449 LVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred ceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999864 2222333 123444445555788999999999998884
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.20 E-value=1.5e-08 Score=109.07 Aligned_cols=320 Identities=18% Similarity=0.175 Sum_probs=211.8
Q ss_pred HHHHhcC--CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcC
Q 009471 160 LARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG 237 (534)
Q Consensus 160 l~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g 237 (534)
-..+.+. +...+.+++..|..+...+.+. + -+....++++.+.+...+..+--++..+...++..-.+
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~-----~-~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l---- 79 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIYLMMLGYDI-----S-FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL---- 79 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHHHHHTT--------G-STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCCC-----c-hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----
Confidence 3344444 6777888888877775433321 1 56777888888888888888888888887766532222
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHH
Q 009471 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLA 316 (534)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~ 316 (534)
++..+.+=|.++++.++..|..++.++. +++....+. +.+.+++.+++|.+|..|+.++.++.. .|+. +.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l~-----~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPLI-----PDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHHH-----HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHHH-----HHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HH
Confidence 4677777788888888999999999887 455555553 788888888899999988888888775 2221 11
Q ss_pred hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHH
Q 009471 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQE 394 (534)
Q Consensus 317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~ 394 (534)
.. .++.+.+++.+.++ .++..|+.++..+ ..++.....+ -...+..|.+++.. |..+..++..+..++......
T Consensus 151 ~~-~~~~l~~lL~d~~~-~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDP-SVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp GG-HHHHHHHHTTHSSH-HHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HH-HHHHHhhhccCCcc-hhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 12 57888888877775 7888888888888 2233221111 11123444444433 567888888888887622111
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc
Q 009471 395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474 (534)
Q Consensus 395 ~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~ 474 (534)
. ....+++.+..++++.++.|..+++.++..+...+... ..+++.|++++.+++++++..++..|..++...
T Consensus 227 ~-~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-- 298 (526)
T PF01602_consen 227 A-DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELL-----QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-- 298 (526)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--
T ss_pred h-hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHH-----HhhHHHHHHHhhcccchhehhHHHHHHHhhccc--
Confidence 1 01456788888888888888888888888888765522 334888888888888889988888888887544
Q ss_pred hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 475 CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 475 ~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
...+. .....+..+..+++..+|..++.+|.+++..
T Consensus 299 -~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 299 -PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp -HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred -chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 22222 1222233444333457888888888888876
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.18 E-value=1.8e-09 Score=116.21 Aligned_cols=330 Identities=18% Similarity=0.186 Sum_probs=224.8
Q ss_pred hhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh
Q 009471 151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE 230 (534)
Q Consensus 151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~ 230 (534)
-....++.+...+.+.++.+|..|+.++..+...+|+... .. .++.+.++|.++++.++..|+.++..+ ..++..
T Consensus 111 ~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~ 185 (526)
T PF01602_consen 111 MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS 185 (526)
T ss_dssp HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH
T ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch
Confidence 3445677777888899999999999999999887775422 22 588899999888999999999999988 222110
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch
Q 009471 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE 310 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~ 310 (534)
..-.-...+..|.+++...++..+.....+|..++...+....- ...++.+..++++.++.+...++.++..+...+.
T Consensus 186 ~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 186 YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH
Confidence 00111223455555566788888988999988887654332200 2235888888888888899999999998887655
Q ss_pred HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-C--CchHHHHHHHHHHh
Q 009471 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G--PLPQESAVGALRNL 387 (534)
Q Consensus 311 ~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-~--~~~~~~a~~aL~~L 387 (534)
.-..+++.+..++.+.+. .++..++.+|..++..++ ..+. .....+..+. + +.++..++..|..+
T Consensus 264 -----~~~~~~~~L~~lL~s~~~-nvr~~~L~~L~~l~~~~~---~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSSDP-NVRYIALDSLSQLAQSNP---PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp -----HHHHHHHHHHHHHTSSSH-HHHHHHHHHHHHHCCHCH---HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred -----HHHhhHHHHHHHhhcccc-hhehhHHHHHHHhhcccc---hhhh---hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 334568889999986665 799999999999998551 1222 1222233333 2 56889999999999
Q ss_pred hcCccHHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 009471 388 VGSVSQEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465 (534)
Q Consensus 388 a~~~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL 465 (534)
+.+.+... +++.|...+ ...+++++..++..++.++.. +..... +++.+++++...+..+...+...+
T Consensus 332 ~~~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i 401 (526)
T PF01602_consen 332 ANESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYVSNEIINVI 401 (526)
T ss_dssp --HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGCHCHHHHHH
T ss_pred ccccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccccchHHHHH
Confidence 98544433 578888888 455888999999999998843 332333 367778888766667777777777
Q ss_pred HHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
..+....++.... .+..|+..++.-..+..+..++++++..+..
T Consensus 402 ~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 402 RDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp HHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred HHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence 7776443332221 2566777777654556777888888776655
No 38
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=6.2e-08 Score=101.27 Aligned_cols=361 Identities=17% Similarity=0.172 Sum_probs=257.7
Q ss_pred hchHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCc-
Q 009471 153 HGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS- 228 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~- 228 (534)
..+|+.|+.++.+.. .+.|+.|+..|..+++ +++ ..+...|+++|++.|... |+++...++.++.++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR-~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYR-EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHH-HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 447999999997665 7889999999999875 454 445568899999999774 69999999999999977652
Q ss_pred ------hh----------HHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--hhhHHHHH-hCCChHHHHHHHc
Q 009471 229 ------CE----------NWL-VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIV-GHGGVRPLIEICQ 288 (534)
Q Consensus 229 ------~~----------~~l-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~l~-~~g~i~~Lv~ll~ 288 (534)
.+ +.+ -..+.|..++..++..+-.+|..+...+.++-.+ .+.+..+. ..-||..|+.++.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 11 222 2447899999999999999999999999998554 34455544 4899999999999
Q ss_pred cCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCC--C-hhHHHHHHHHHHHHccCChHHHHHHHhcCCh
Q 009471 289 TGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGI--L-LGSKEYAAECLQNLTASNENLRRSVVSEGGI 364 (534)
Q Consensus 289 ~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~--~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l 364 (534)
+....+|..+.-.|..|+.+. .+++.++-++++..|+.+++... + .-|.+.|+..|.||-..+..++..+.+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 999999999999999999866 55555555999999999996432 1 1478999999999999999999888889999
Q ss_pred HHHHHhhcC----C-c-----h-----HHHHHHHHHHhhcCcc--------HHHHHhcCcHHHHHHHHhcC--CHHHHHH
Q 009471 365 RSLLAYLDG----P-L-----P-----QESAVGALRNLVGSVS--------QEVLISLGFFPRLVHVLKAG--SLGAQQA 419 (534)
Q Consensus 365 ~~L~~~L~~----~-~-----~-----~~~a~~aL~~La~~~~--------~~~l~~~~~i~~Lv~lL~~~--~~~v~~~ 419 (534)
|.|.++|.- + + . ...++.+++.+..+.+ ...+...+++..|..++-+. ..+++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988742 1 1 1 2356777777777422 23556788899999888665 3589999
Q ss_pred HHHHHHHhcCC-hhHHHHHHhcC----------chHHHHHhhcC-CChHHHHHHHHHHHHhc-CCCcchHHHHhh-----
Q 009471 420 AASALCRVCTS-AEMKKLVGEAG----------CTPLLIKLLEA-KPNSVREVAAQAISSLV-TLPQNCREVKRD----- 481 (534)
Q Consensus 420 A~~aL~~la~~-~~~~~~i~~~g----------~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~-~~~~~~~~~~~~----- 481 (534)
+..+++++.++ ..+...+.+.. .+-.++.+..+ ..+..|.+...++..+. .+....+.++..
T Consensus 337 siitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 337 SIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 99999999976 55566654421 11223333333 45667777777776555 445566655541
Q ss_pred ---CC-CH---HHHHhhcCCCCchhHHHHHHHHHHhhchhHHHH
Q 009471 482 ---DK-SV---PNLVQLLDPSPQNTAKKYAVACLASLSPSARKL 518 (534)
Q Consensus 482 ---~~-~v---~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~ 518 (534)
-+ .+ ..++..+.+. +...-.++..+|+++.....+.
T Consensus 417 ~nst~Nsl~ag~l~~~~l~s~-d~~~nwFt~v~lmh~l~dn~~~ 459 (970)
T KOG0946|consen 417 TNSTSNSLSAGQLLLVGLSST-DSLDNWFTAVILMHLLQDNDQL 459 (970)
T ss_pred ccccccchhhhhHHHHhhccc-hHHHHHHHHHHHHHHHHHhHHH
Confidence 01 11 1122333332 2234456666777766554333
No 39
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.17 E-value=1e-08 Score=105.36 Aligned_cols=325 Identities=18% Similarity=0.144 Sum_probs=210.2
Q ss_pred chHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCc--
Q 009471 154 GNTRELLARLQI--GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGS-- 228 (534)
Q Consensus 154 ~~i~~Ll~~L~~--~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~-- 228 (534)
..++.++..++. +.++.+.+....+..++.+.......+.+.+..+.|.++|.++| ..+++..++++..+-+..+
T Consensus 51 GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q 130 (678)
T KOG1293|consen 51 GAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQ 130 (678)
T ss_pred cchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccc
Confidence 346777776654 45666777777888888888888888999899999999999999 8899999999999987664
Q ss_pred -hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHH---H
Q 009471 229 -CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK---N 304 (534)
Q Consensus 229 -~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~---n 304 (534)
.........++..+.-++.-+.......-+....+++...+++..+..+|..+.+.-++..-+...|..+..+++ +
T Consensus 131 ~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~ 210 (678)
T KOG1293|consen 131 DKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDR 210 (678)
T ss_pred ccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccce
Confidence 223333334555555555424444445555555666666666666666666665554444333444444444444 3
Q ss_pred ccCCc-hHHH----HHHhhCc---------------------HHHHHHHhhcCCC-------------------------
Q 009471 305 ISAVP-EVRQ----MLAEEGI---------------------VSVMIKLLDCGIL------------------------- 333 (534)
Q Consensus 305 La~~~-~~~~----~i~e~g~---------------------i~~L~~ll~~~~~------------------------- 333 (534)
+..++ .... ...+.|+ ..+++.+++.+.+
T Consensus 211 iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~ 290 (678)
T KOG1293|consen 211 ILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIV 290 (678)
T ss_pred eeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhhe
Confidence 22221 1000 0000111 1122222221100
Q ss_pred --------------------------------------------------------------------------------
Q 009471 334 -------------------------------------------------------------------------------- 333 (534)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (534)
T Consensus 291 l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~ 370 (678)
T KOG1293|consen 291 LMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLK 370 (678)
T ss_pred eecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHH
Confidence
Q ss_pred --------------------hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc--hHHHHHHHHHHhhc--
Q 009471 334 --------------------LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVG-- 389 (534)
Q Consensus 334 --------------------~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~--~~~~a~~aL~~La~-- 389 (534)
......++.++.+++..-...|...-...+.++|++++.+|+ +...++++|.|+..
T Consensus 371 k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef 450 (678)
T KOG1293|consen 371 KEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF 450 (678)
T ss_pred HHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc
Confidence 011222233333333222222222223567888999987765 67889999999997
Q ss_pred CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS 467 (534)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~ 467 (534)
.+-+..++..|+++.+..++.+.++.++..+.|+|+++..+ ++.+......=+...+..+.++++..||+.+...|.|
T Consensus 451 s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 451 SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999865 4445555444457788888999999999999999999
Q ss_pred hcCCCcchHHH
Q 009471 468 LVTLPQNCREV 478 (534)
Q Consensus 468 L~~~~~~~~~~ 478 (534)
+..+....-.+
T Consensus 531 l~c~~~~svdf 541 (678)
T KOG1293|consen 531 LTCNSRKSVDF 541 (678)
T ss_pred hhcCcHHHHHH
Confidence 98775554443
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.15 E-value=1.5e-08 Score=102.87 Aligned_cols=272 Identities=11% Similarity=0.090 Sum_probs=195.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
...++..|..+|.-....|+..|..++...+.........-..+.+...++.+ +...+..++.+|..+...+++|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566777888888899999999998865443211111111344556666654 47888899999999999999999999
Q ss_pred hcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHccCCc--
Q 009471 235 SEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISAVP-- 309 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~~~-- 309 (534)
+.++++.|+.+|+.. +...+..++-++|-||.+++....+...+.|+.|+.+++.. -..+.+-++.+|+|+...+
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999873 56889999999999999988777777899999999999864 4456788999999998843
Q ss_pred -----hHHHHHHhhCcHHHHHHHhhcCC-ChhHHH-------HHHHHHHHHccCChHHHH--------------------
Q 009471 310 -----EVRQMLAEEGIVSVMIKLLDCGI-LLGSKE-------YAAECLQNLTASNENLRR-------------------- 356 (534)
Q Consensus 310 -----~~~~~i~e~g~i~~L~~ll~~~~-~~~v~~-------~a~~~L~~La~~~~~~~~-------------------- 356 (534)
.....|++.|+.+.+-.+....- ++++.+ .--..+..+++ .+....
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~lts-fD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSS-FDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcCCccCCCCCCCchHHH
Confidence 24456677776665544443221 222222 22222333343 111111
Q ss_pred ----HHHhc--CChHHHHHhhc---CCchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009471 357 ----SVVSE--GGIRSLLAYLD---GPLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC 425 (534)
Q Consensus 357 ----~i~~~--g~l~~L~~~L~---~~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (534)
.+-+. ..+..|+++|+ +|.+...||.=|+.+++ |..+..+-..|+=..+++++.+++++|+.+|+.++.
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 11111 23677888885 26778899999999998 667777777899999999999999999999999998
Q ss_pred Hhc
Q 009471 426 RVC 428 (534)
Q Consensus 426 ~la 428 (534)
.|-
T Consensus 422 klm 424 (429)
T cd00256 422 KLM 424 (429)
T ss_pred HHH
Confidence 874
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.2e-08 Score=107.20 Aligned_cols=251 Identities=18% Similarity=0.182 Sum_probs=199.5
Q ss_pred hHHHHHHHHhcC-CHHHHHHHHHHHHHHhh-cChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCc-hh
Q 009471 155 NTRELLARLQIG-HLEAKHKALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGS-CE 230 (534)
Q Consensus 155 ~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~-~~ 230 (534)
-+..|+.-|+.. |+..+.+|+..|.+++. .+++....+.-...||.|+.+|++++ .+++..|+++|.++++--+ ..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 477888888765 88889999999988763 56655544444467999999999975 9999999999999998654 78
Q ss_pred HHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC--
Q 009471 231 NWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-- 307 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-- 307 (534)
..+++.++||.|+.-|. -.-.++.+++..+|..++.. .-.++.+.|++...+.++..-+..+|+.|+.+-.|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999997554 46888999999999999874 34567889999999999988888899999999999987
Q ss_pred CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc---CChHHHHHHHhcCChHHHHHhhcC------CchHH
Q 009471 308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDG------PLPQE 378 (534)
Q Consensus 308 ~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~---~~~~~~~~i~~~g~l~~L~~~L~~------~~~~~ 378 (534)
.++.-..++| .+|.|..+|...+. ...+.++-|+..++. +.+..-+.+...|.+....+++.- ..+..
T Consensus 326 ~sd~f~~v~e--alPlL~~lLs~~D~-k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 326 RSDEFHFVME--ALPLLTPLLSYQDK-KPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCccchHHHH--HHHHHHHHHhhccc-hhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 3344455554 59999999998887 789999999999887 345566778888988888888742 23456
Q ss_pred HHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHh
Q 009471 379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLK 410 (534)
Q Consensus 379 ~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~ 410 (534)
..++.+.-+|. +.....+...++...|..+|.
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 67777777776 344556677888888888884
No 42
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.09 E-value=7.5e-08 Score=94.50 Aligned_cols=317 Identities=17% Similarity=0.139 Sum_probs=229.7
Q ss_pred chHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHh------cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVM------GRSNIAALVQLLTATSPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~------~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~ 226 (534)
..+..++..+.. ..++.....+.-+-+++.++......+- ....-...+.+|...+.-+.+.+.+++..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 446666666653 4566677777778888876664433332 123367889999999999999999999999877
Q ss_pred CchhHHHHhcC-CHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHH
Q 009471 227 GSCENWLVSEG-VLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTL 302 (534)
Q Consensus 227 ~~~~~~l~~~g-~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL 302 (534)
..++-...+-. ....|-..+.+ .+++....++++|..+...++.+..++..+|+..++..+.+ .+-.++...+.++
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 65322111111 12333445555 57778889999999999999999999999999999998843 3667889999999
Q ss_pred HHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh------HHHHHHHhcCChHHHHHhhcC---
Q 009471 303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE------NLRRSVVSEGGIRSLLAYLDG--- 373 (534)
Q Consensus 303 ~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~------~~~~~i~~~g~l~~L~~~L~~--- 373 (534)
|.|+.++...+.+..-+.++.|.+++++...+.|..-++.++.|+....+ .....++..+ ++.-++.|+.
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKY 303 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCC
Confidence 99999998888887789999999999887766888899999999998653 2223344444 4444455432
Q ss_pred --Cch-------HHHHHHHHHHhhc----------------C---------ccHHHHHh--cCcHHHHHHHHhcC-CHHH
Q 009471 374 --PLP-------QESAVGALRNLVG----------------S---------VSQEVLIS--LGFFPRLVHVLKAG-SLGA 416 (534)
Q Consensus 374 --~~~-------~~~a~~aL~~La~----------------~---------~~~~~l~~--~~~i~~Lv~lL~~~-~~~v 416 (534)
+++ ++.--.....|++ | ++...+.+ ..++..|+++|+.. +|.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 221 1111111122221 0 23334444 34588999999765 4888
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 417 QQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 417 ~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
..-|+.=|+.+.++ |+.+..+.+.|+=..+++++++++++|+..|..|+..|..+
T Consensus 384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 89999999999975 99999999999999999999999999999999999887643
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.07 E-value=4.9e-09 Score=104.51 Aligned_cols=213 Identities=20% Similarity=0.225 Sum_probs=158.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc------CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG------RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~------~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
.++..+ +.+.+.....+..+.+++.+++.....+.. .....+++++++++|..++..|+..|..+....+.+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 578888999999999999888866555543 1257889999999999999999999999988776443
Q ss_pred HHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH-----cc--CChHHHHHHHH
Q 009471 232 WLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-----QT--GDSVSQAAAAC 300 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll-----~~--~~~~~~~~a~~ 300 (534)
.-...+.++.++..+.+ .+...+..++.+|.+|...++.+..+.+.|+++.++.++ .+ .+..++..++-
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33335667888888876 344567899999999999999999999999999999999 22 34567799999
Q ss_pred HHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH-HHHHHHhcCChHHHHHhh
Q 009471 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN-LRRSVVSEGGIRSLLAYL 371 (534)
Q Consensus 301 aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~-~~~~i~~~g~l~~L~~~L 371 (534)
++|.|+..++....+...+.++.++++++....+.+.+-++.++.|+....+. +...++..|+++.+-.+.
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 99999999999999999999999999998887778999999999999986553 555666666555554443
No 44
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=8.6e-08 Score=104.66 Aligned_cols=349 Identities=18% Similarity=0.167 Sum_probs=218.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWL 233 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l 233 (534)
.++-|++..+++++..|..|+..|..+...-.......++ ...+.+.+.+.+++..+|..|++++..++...+ ++...
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence 4555566668999999999999998886432211111111 234555556666665599999999999987553 22222
Q ss_pred Hh-cCCHHHHHHHH----ccCCHHHHHHHHHHHHHhhcChhh--HHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHH
Q 009471 234 VS-EGVLPPLIRLV----ESGSTVGKEKATISLQRLSMSAEM--ARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKN 304 (534)
Q Consensus 234 ~~-~g~i~~Lv~lL----~~~~~~~~~~A~~~L~~Ls~~~~~--~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~n 304 (534)
.. ...+|.++..+ +.++.+....+..+|..+....+. +..+. ..+..-+.+..+ -++.+|..|+..|..
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 21 13456565555 456666677788888888765433 22221 123333444443 367899999999998
Q ss_pred ccCCc-hHHHHHHh--hCcHHHHHHHhhcCCCh---------------hHHHHHHHHHHHHccCChHHHHHHHhcCChHH
Q 009471 305 ISAVP-EVRQMLAE--EGIVSVMIKLLDCGILL---------------GSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366 (534)
Q Consensus 305 La~~~-~~~~~i~e--~g~i~~L~~ll~~~~~~---------------~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (534)
++... ..++.-.. ...++.++.++.+.... .....|..+|-.++.+-+.. -+++.
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~-------~v~p~ 348 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK-------QVLPP 348 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh-------hehHH
Confidence 88752 22222222 33455555555422210 13445556666665532221 12444
Q ss_pred HH----HhhcCC--chHHHHHHHHHHhhcCccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHH
Q 009471 367 LL----AYLDGP--LPQESAVGALRNLVGSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKL 436 (534)
Q Consensus 367 L~----~~L~~~--~~~~~a~~aL~~La~~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~ 436 (534)
++ .++.++ .-|..++.+|+.++.. +.+.+.. ..+++.++..|++++|.||..|+.+++.++.+ ++..+.
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EG-c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEG-CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 44 445664 4578889999888862 2222222 45788888889999999999999999999976 665555
Q ss_pred HHhcCchHHHHHhhcC-CChHHHHHHHHHHHHhcCCCcch--HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471 437 VGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVTLPQNC--REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (534)
Q Consensus 437 i~~~g~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~~~~~--~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~ 513 (534)
.. .-.++.|+..+.+ .++.++..|+.+|-+++..-.+. ..+.. +.+.+++.+|..++...++..++.++.+.+.
T Consensus 428 ~~-e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 428 HH-ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HH-HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 42 2456788888874 56799999999999998543332 22222 4555456566555466799999999999998
Q ss_pred hHHH
Q 009471 514 SARK 517 (534)
Q Consensus 514 ~~k~ 517 (534)
.+++
T Consensus 505 AA~~ 508 (1075)
T KOG2171|consen 505 AAQE 508 (1075)
T ss_pred HHhh
Confidence 8544
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=6.4e-08 Score=99.38 Aligned_cols=411 Identities=15% Similarity=0.146 Sum_probs=253.0
Q ss_pred HHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhhHhhhchhhhhhhchhh
Q 009471 46 MIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGL 125 (534)
Q Consensus 46 ~i~~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~c~~~~~~~~l~~~s~~~~~~~~l~~~~~~~~~ 125 (534)
.||+-++-+.+-+.+-..-..|+ ++|+.+.+.|.... -.-| .| .|++ |..--+|...
T Consensus 105 lIr~tvGivITTI~s~~~~~~wp------elLp~L~~~L~s~d--~n~~-----Eg------A~~A----L~KIcEDsa~ 161 (885)
T KOG2023|consen 105 LIRATVGIVITTIASTGGLQHWP------ELLPQLCELLDSPD--YNTC-----EG------AFGA----LQKICEDSAQ 161 (885)
T ss_pred HHHhhhhheeeeeecccccccch------hHHHHHHHHhcCCc--cccc-----ch------hHHH----HHHHHhhhHH
Confidence 56666666666665555555676 66666666555332 0111 12 2222 2222333333
Q ss_pred HHhhCCCCCCCcccccCCCCchhhhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHh
Q 009471 126 LIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL 205 (534)
Q Consensus 126 ~~~~g~l~~~~~~v~~~p~~~a~~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL 205 (534)
.+.+..+ +.+....++.+++..++.++..|..|+..+....-........-++ ..++.+..+-
T Consensus 162 ~lds~~~----------------~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD-~Fle~lFala 224 (885)
T KOG2023|consen 162 FLDSDVL----------------TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHID-KFLEILFALA 224 (885)
T ss_pred HHhhhcc----------------cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHH-HHHHHHHHHc
Confidence 3332222 2346778999999999999999999999998887655544333333 5577777777
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh--CCChHHH
Q 009471 206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPL 283 (534)
Q Consensus 206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--~g~i~~L 283 (534)
.+++++||...+.++..|.+..+.|-.=--.+++..++..-.+.+..+.-.||.....++..+..+..+.. ...+|.|
T Consensus 225 nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 225 NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVL 304 (885)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence 88889999999999999987654332222236677888888888999999999999999998855544432 3445555
Q ss_pred HHHHccC--------------------------------------------------------ChHHHHHHHHHHHHccC
Q 009471 284 IEICQTG--------------------------------------------------------DSVSQAAAACTLKNISA 307 (534)
Q Consensus 284 v~ll~~~--------------------------------------------------------~~~~~~~a~~aL~nLa~ 307 (534)
++=+.-. ++..|+-.+.+|--|+
T Consensus 305 l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa- 383 (885)
T KOG2023|consen 305 LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA- 383 (885)
T ss_pred HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-
Confidence 5322210 0223433333333222
Q ss_pred CchHHHHHHhhCcHHHHHHHh----hcCCChhHHHHHHHHHHHHccCChHHHHHHHhc--CChHHHHHhhcC--CchHHH
Q 009471 308 VPEVRQMLAEEGIVSVMIKLL----DCGILLGSKEYAAECLQNLTASNENLRRSVVSE--GGIRSLLAYLDG--PLPQES 379 (534)
Q Consensus 308 ~~~~~~~i~e~g~i~~L~~ll----~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~--g~l~~L~~~L~~--~~~~~~ 379 (534)
.+.....++.++.++ .++.. .+++.++-+++.|+.+ +-+-++.. ..++.++++|++ |-+|..
T Consensus 384 ------nvf~~elL~~l~PlLk~~L~~~~W-~vrEagvLAlGAIAEG---cM~g~~p~LpeLip~l~~~L~DKkplVRsI 453 (885)
T KOG2023|consen 384 ------NVFGDELLPILLPLLKEHLSSEEW-KVREAGVLALGAIAEG---CMQGFVPHLPELIPFLLSLLDDKKPLVRSI 453 (885)
T ss_pred ------HhhHHHHHHHHHHHHHHHcCcchh-hhhhhhHHHHHHHHHH---HhhhcccchHHHHHHHHHHhccCccceeee
Confidence 223344555555555 45555 7899999999999963 22222211 247778888877 778999
Q ss_pred HHHHHHHhhc---CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhh---c
Q 009471 380 AVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLL---E 451 (534)
Q Consensus 380 a~~aL~~La~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll---~ 451 (534)
.||+|...+. .+..++... .++..|++.+-+++..||+.|+.++..+-.. ++...++ ...+..|+..+ +
T Consensus 454 TCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l--~~IL~~l~~af~kYQ 530 (885)
T KOG2023|consen 454 TCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL--EYILDQLVFAFGKYQ 530 (885)
T ss_pred eeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHh
Confidence 9999999886 333323222 1344445555578889999999999888643 2332222 11233333333 2
Q ss_pred CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHh---hcCCCCchhHHHHHHHHHHhhchh
Q 009471 452 AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ---LLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 452 ~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~---lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.++--+-.-|.+.|..=+++.-|...+++ -.+++|++ +|..++ ..-.--..||.+++..
T Consensus 531 ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiq--iLmPPLi~KW~~lsd~D--KdLfPLLEClSsia~A 592 (885)
T KOG2023|consen 531 KKNLLILYDAIGTLADSVGHALNKPAYIQ--ILMPPLIEKWELLSDSD--KDLFPLLECLSSIASA 592 (885)
T ss_pred hcceehHHHHHHHHHHHHHHhcCcHHHHH--HhccHHHHHHHhcCccc--chHHHHHHHHHHHHHH
Confidence 45555666778888877777888888777 57788874 444432 1223445666666655
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.01 E-value=1.9e-08 Score=100.22 Aligned_cols=221 Identities=17% Similarity=0.189 Sum_probs=154.2
Q ss_pred cHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCch-hHHHHh------cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009471 197 NIAALVQLLTA--TSPRIREKTVTVICSLAESGSC-ENWLVS------EGVLPPLIRLVESGSTVGKEKATISLQRLSMS 267 (534)
Q Consensus 197 ~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~~-~~~l~~------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~ 267 (534)
.+..++.+|+. +++++.+..+..+..+..+++. ...+.. .....+++++++.++..++..++..|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 36666666655 4689999999999999887763 333333 13789999999999999999999999999766
Q ss_pred hhhHHHHHhCCChHHHHHHHcc----CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHh------hcCCChhHH
Q 009471 268 AEMARAIVGHGGVRPLIEICQT----GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL------DCGILLGSK 337 (534)
Q Consensus 268 ~~~~~~l~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll------~~~~~~~v~ 337 (534)
.+....-...+.++.++..+.+ ++...+..++.+|.+|...++.|..+.+.++++.+.+++ .+......+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 4443332223445777777664 345567899999999999999999999999999999999 334444789
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc-Cc--cHHHHHhcCcHHHHHHHHhc
Q 009471 338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SV--SQEVLISLGFFPRLVHVLKA 411 (534)
Q Consensus 338 ~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~--~~~~l~~~~~i~~Lv~lL~~ 411 (534)
++++.|++.++. ++.....+.+.+.++.|.++++. ..+...++.++.||.. .. ....++..++++.+-.+...
T Consensus 216 Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 216 YQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 999999999998 56666778888899999999865 4578899999999998 33 56677777766665555532
Q ss_pred --CCHHHHH
Q 009471 412 --GSLGAQQ 418 (534)
Q Consensus 412 --~~~~v~~ 418 (534)
.|+++.+
T Consensus 295 k~~Dedl~e 303 (312)
T PF03224_consen 295 KWSDEDLTE 303 (312)
T ss_dssp --SSHHHHH
T ss_pred CCCCHHHHH
Confidence 2555543
No 47
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=8.7e-07 Score=92.92 Aligned_cols=314 Identities=16% Similarity=0.175 Sum_probs=234.7
Q ss_pred cHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcChh----
Q 009471 197 NIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAE---- 269 (534)
Q Consensus 197 ~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~---- 269 (534)
-|+.|+.-..+.. .+=|..|++.|-.++.. +|.. +...++++|+..|+.. +++....+..++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 4777777666655 77899999999888753 3443 4556799999999875 88899999999999976653
Q ss_pred --h-----------HHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHccC--CchHHHHHHh-hCcHHHHHHHhhcCC
Q 009471 270 --M-----------ARAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAE-EGIVSVMIKLLDCGI 332 (534)
Q Consensus 270 --~-----------~~~l~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e-~g~i~~L~~ll~~~~ 332 (534)
+ +..|. ..+.|..|+..+...|-.+|..+...|.++-. ..+.+..+.. +-+|..++.++.+..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 1 12333 37789999999999999999999999999876 3488888776 778999999999887
Q ss_pred ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC------CchHHHHHHHHHHhhc--CccHHHHHhcCcHHH
Q 009471 333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVG--SVSQEVLISLGFFPR 404 (534)
Q Consensus 333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~------~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~ 404 (534)
. -+|..++-.|..++.+++..+..+.=++..+.|+.++.. .-+.+.|+..|-||-. ..+...+.+.+.+++
T Consensus 180 E-~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 180 E-PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred h-hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 6 689999999999999999998888888999999999965 2368899999999998 467778889999999
Q ss_pred HHHHHhc---CCH--------HH--HHHHHHHHHHhcCC-------hhHHHHHHhcCchHHHHHhhcCC--ChHHHHHHH
Q 009471 405 LVHVLKA---GSL--------GA--QQAAASALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAA 462 (534)
Q Consensus 405 Lv~lL~~---~~~--------~v--~~~A~~aL~~la~~-------~~~~~~i~~~g~v~~Lv~ll~~~--~~~v~~~A~ 462 (534)
|.++|.. ++. .| ...++.++..+... ..+.+.+...+++..|+.++-++ +.+++..+.
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 9988842 221 11 23566677777643 23457888899999999998755 578899999
Q ss_pred HHHHHhc-CCCcchHHHHhh----CC-CHHHHH----hhcCCCCchhHHHHHHHHHHhhchh
Q 009471 463 QAISSLV-TLPQNCREVKRD----DK-SVPNLV----QLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 463 ~aL~~L~-~~~~~~~~~~~~----~~-~v~~Lv----~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+++... ++..|..+|..- .. ..+.++ .+..+...-..|.....++.+....
T Consensus 339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 339 ITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence 9999888 557777777651 11 122222 3333332334666666666666655
No 48
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.99 E-value=4e-08 Score=97.00 Aligned_cols=265 Identities=18% Similarity=0.204 Sum_probs=194.7
Q ss_pred HHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcC
Q 009471 191 AVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMS 267 (534)
Q Consensus 191 ~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~ 267 (534)
.+...|+.+.|++++.+++ ..+|..+.+.|..+...+ +++.++..| +..++.+-+. ..++.+...+..|.+|..+
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 4556699999999999998 456999999998886544 777787777 6666666654 4777888999999999887
Q ss_pred h-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHH
Q 009471 268 A-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL 344 (534)
Q Consensus 268 ~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L 344 (534)
+ +.+..+++.||+..++--|+..+|.+..+++-+|.|++... +.++.|++..+-..|+.+..+.++ -.+.+|+-+.
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe-l~R~~AClAV 331 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE-LLRLHACLAV 331 (832)
T ss_pred hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH-HHHHHHHHHH
Confidence 4 55788999999999999999999999999999999998744 889999999999999999877765 5799999999
Q ss_pred HHHccCChHHHHHHHhcCChH---HHHHhhcCCchHHHHHHHHHHhhcC-ccHHHHHhcCcHHHHHHHHhcCCHHHHHHH
Q 009471 345 QNLTASNENLRRSVVSEGGIR---SLLAYLDGPLPQESAVGALRNLVGS-VSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420 (534)
Q Consensus 345 ~~La~~~~~~~~~i~~~g~l~---~L~~~L~~~~~~~~a~~aL~~La~~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A 420 (534)
..|+. +.+....+-+.|.+. +++..++.. .+++. ....+=.....+.+|+.+|++.--+.|..+
T Consensus 332 ~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~-----------~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~ 399 (832)
T KOG3678|consen 332 AVLAT-NKEVEREVRKSGTLALVEPLVASLDPG-----------RFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIG 399 (832)
T ss_pred hhhhh-hhhhhHHHhhccchhhhhhhhhccCcc-----------hhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhH
Confidence 99997 455555666666544 344433321 11110 000000113457889999987766666665
Q ss_pred HHHHHHhcC--C-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 421 ASALCRVCT--S-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 421 ~~aL~~la~--~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
+.-++.=+. + ..--+.+.+-|.|+.|-++..+++......|.++|..+..
T Consensus 400 AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 400 AFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 554443221 2 2223556677999999999998888778889999988753
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=98.99 E-value=1e-06 Score=96.25 Aligned_cols=290 Identities=13% Similarity=0.118 Sum_probs=204.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
.+.++-..|++.+...|.+++..+........+. ..+.+..++++.+++.+++...--.+.+++...+....+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence 4667777888889888999999887776433221 134566777888999999999999999988755432222
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHH
Q 009471 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (534)
++..+.+=+.+.++.+|..|.++++++.. ++....+ ++.+.+.+.+.+|-+|..|+.++.++-.... ..
T Consensus 106 ---aINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--el 174 (746)
T PTZ00429 106 ---AVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVLEYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QL 174 (746)
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cc
Confidence 47888888889999999999999998765 3344444 3778888899999999999999999875322 23
Q ss_pred HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCcc
Q 009471 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVS 392 (534)
Q Consensus 315 i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~ 392 (534)
+.+.+.++.+.+++.+.++ .++.+|+.+|..+...++.. .-...+.+..++..+.+ +..|...+.+|.... +..
T Consensus 175 v~~~~~~~~L~~LL~D~dp-~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~-P~~ 250 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNP-VVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR-PSD 250 (746)
T ss_pred ccccchHHHHHHHhcCCCc-cHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC-CCC
Confidence 3456788899999988887 89999999999998654421 11223335566666653 667777777775433 222
Q ss_pred HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
... ...++..+...|++.++.|...|++++.++... ++..+.+. ....++|+.++ +.++++|..++..|..++.
T Consensus 251 ~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 251 KES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLV 326 (746)
T ss_pred cHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence 222 134678888889999999999999999999854 33322221 11235566664 4567788888777766654
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.2e-08 Score=93.47 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHH
Q 009471 249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKL 327 (534)
Q Consensus 249 ~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~l 327 (534)
.+.+-++.|..-|..+..+-+++..+...||...++.++.+.++.+|..|+++|...+. +|..+..+.+.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 36777889999999999999999999999999999999999999999999999999988 56899999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhc--CccHHHHHhcCc
Q 009471 328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLISLGF 401 (534)
Q Consensus 328 l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~--~~~~~~l~~~~~ 401 (534)
+.+.++..++..|+.++..+-..++.....+...+|...|..++++ ...+..++..+..+.. ......+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 9876665789999999999999999999999999999999999976 3467889999999987 233344556777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 402 FPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
...+..+..+.+..+.+.+..++..+...
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 77778888888889999999888877643
No 51
>PTZ00429 beta-adaptin; Provisional
Probab=98.94 E-value=2.8e-06 Score=92.86 Aligned_cols=328 Identities=13% Similarity=0.120 Sum_probs=219.9
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (534)
...+..+.+.+...++.+|..|+-++.++...+++ .+.+.|.++.|.++|.++++.+...|+.+|..+....+.. .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l 214 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I 214 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence 33456666777888999999999999999876663 3345678999999999999999999999999998765422 2
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc--h
Q 009471 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--E 310 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~ 310 (534)
-...+.+..++..+.+.++..+-....+|......++. .. ...+..+...+++.++.+...|+.++.++.... +
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~-e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE-SA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH-HH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 22334466677777777777787777777654322111 11 233577788888999999999999999998642 2
Q ss_pred HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHHHHHhhc
Q 009471 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVG 389 (534)
Q Consensus 311 ~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~aL~~La~ 389 (534)
...... ......++.++ ++++ +++..++..|..+....+. ++... +..++...++ ..++...+.+|..++.
T Consensus 291 ~~~~~~-~rl~~pLv~L~-ss~~-eiqyvaLr~I~~i~~~~P~----lf~~~-~~~Ff~~~~Dp~yIK~~KLeIL~~Lan 362 (746)
T PTZ00429 291 LIERCT-VRVNTALLTLS-RRDA-ETQYIVCKNIHALLVIFPN----LLRTN-LDSFYVRYSDPPFVKLEKLRLLLKLVT 362 (746)
T ss_pred HHHHHH-HHHHHHHHHhh-CCCc-cHHHHHHHHHHHHHHHCHH----HHHHH-HHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence 222221 22335566664 3444 7999999999888875542 23221 4444444455 4478899999999998
Q ss_pred CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (534)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L 468 (534)
+.+...+ +.-|.++..+.+.+++..+..++++++.. +.... .++..|++++..+.. +...+..++.++
T Consensus 363 e~Nv~~I-----L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~I 431 (746)
T PTZ00429 363 PSVAPEI-----LKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDI 431 (746)
T ss_pred cccHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHH
Confidence 6666554 46677778788899999999999999853 43333 347788888875443 344567777777
Q ss_pred cCCCcchHHHHhhCCCHHHHHhhcC--CCCchhHHHHHHHHHHhhchh
Q 009471 469 VTLPQNCREVKRDDKSVPNLVQLLD--PSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 469 ~~~~~~~~~~~~~~~~v~~Lv~lL~--~~~~~~~k~~a~~~L~~L~~~ 514 (534)
...-++.. .+..|+..+. .-.++..|...+|+|...+..
T Consensus 432 lrkyP~~~-------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 432 VRKYPELL-------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred HHHCccHH-------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence 64433321 2344444331 112345777778888776644
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2e-07 Score=90.39 Aligned_cols=184 Identities=19% Similarity=0.235 Sum_probs=152.4
Q ss_pred hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHH
Q 009471 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPL 242 (534)
Q Consensus 164 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~L 242 (534)
.+.+.+.+..|+..|..++. +-++...++..||..+++..+++++..+|+.|+++|+..+.+++ ....+.+.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45678999999999999986 44566788899999999999999999999999999999999887 88899999999999
Q ss_pred HHHHccC-CHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHccCCc-hHHHHHHh
Q 009471 243 IRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVP-EVRQMLAE 317 (534)
Q Consensus 243 v~lL~~~-~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~-~~~~~i~e 317 (534)
+..+.+. +..++..|..+++.+-.+ ++....|...+|...|..++++ .+...+..++..+.++.... ..+..+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999876 556778999999999876 5556778888999999999998 46667788999999988754 34444445
Q ss_pred hCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
.+....+..+....+. ++.+.++.++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~-~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDF-EVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccch-hhhHHHHHHHHHHHH
Confidence 6766777777777776 788888888777665
No 53
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.1e-06 Score=80.53 Aligned_cols=316 Identities=15% Similarity=0.149 Sum_probs=221.5
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-----hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS-----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM 270 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 270 (534)
...+.|-.-|.+++..++..++..++.+.++.+ ....+++.++++.++..+..++.++...|...+..++..++.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 556777777888889999999999999988765 234556889999999999999999999999999999999888
Q ss_pred HHHHHhCCChHHH--HHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009471 271 ARAIVGHGGVRPL--IEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347 (534)
Q Consensus 271 ~~~l~~~g~i~~L--v~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~L 347 (534)
-..+...+....+ ..+-...+.-.|...+..+..+.+ .++........|.+..|..-+....+.-++.++++....+
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 8888776555443 444444566677888888888776 4577777777898888877776533325788999999999
Q ss_pred ccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHH----Hhhc-CccHHHHHh--cCcHHHHHHHHhcCCHHH
Q 009471 348 TASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALR----NLVG-SVSQEVLIS--LGFFPRLVHVLKAGSLGA 416 (534)
Q Consensus 348 a~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~----~La~-~~~~~~l~~--~~~i~~Lv~lL~~~~~~v 416 (534)
+. .++.|+.+-++|.++.+.+++.. |--...++...+ +.+- ....+.+.+ .-+++..++++...+++.
T Consensus 242 ae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 242 AE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 96 56778888899999999999854 222333333333 3332 223344433 234667778888999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhh----cCCChHHHHHHHHHHHHhcCC---CcchH----------HHH
Q 009471 417 QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLL----EAKPNSVREVAAQAISSLVTL---PQNCR----------EVK 479 (534)
Q Consensus 417 ~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll----~~~~~~v~~~A~~aL~~L~~~---~~~~~----------~~~ 479 (534)
++.|..+++-|..+.+.++.+...| .|..-.++ +.....-++.+..+|.++++. ++++. .++
T Consensus 321 ieaAiDalGilGSnteGadlllkTg-ppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTEGADLLLKTG-PPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHHhccCCcchhHHHhccC-ChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 9999999999999988888887766 33333332 322234466777777777743 22221 000
Q ss_pred -----hh--CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 480 -----RD--DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 480 -----~~--~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+. .+-.......++.. .++++..+...++.++..
T Consensus 400 fdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcC
Confidence 10 12223334445443 447899999999998876
No 54
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=9.9e-08 Score=100.46 Aligned_cols=200 Identities=21% Similarity=0.209 Sum_probs=160.5
Q ss_pred hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHH
Q 009471 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQE 394 (534)
Q Consensus 318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~ 394 (534)
.-++|.|+.++++++..++...|+++|.+|+..-+.-...++++++||.|+.-|.. -++.|.++.+|-.|++.. ..
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~ 288 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PK 288 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cH
Confidence 55799999999988777999999999999999888877889999999999987654 678999999999999832 35
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-
Q 009471 395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL- 471 (534)
Q Consensus 395 ~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~- 471 (534)
.++..|.+...+.++.--+..+|+.|+.+..|+|.+ ++--..+. ..+|.|..++...+..+.+.++.++++++..
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 678899999999999888899999999999999975 44444443 4699999999999999999999999999833
Q ss_pred --CcchHHHHhhCCCHHHHHhhcCCCC---chhHHHHHHHHHHhhchhHHHHHH
Q 009471 472 --PQNCREVKRDDKSVPNLVQLLDPSP---QNTAKKYAVACLASLSPSARKLLE 520 (534)
Q Consensus 472 --~~~~~~~~~~~~~v~~Lv~lL~~~~---~~~~k~~a~~~L~~L~~~~k~~~~ 520 (534)
.++.-+.+-.++.+....+||.-.+ +......-+..|..++++..-+++
T Consensus 367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~ 420 (1051)
T KOG0168|consen 367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFR 420 (1051)
T ss_pred ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHH
Confidence 3444444446899999999997653 233556667777778777333333
No 55
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.78 E-value=1.5e-06 Score=85.47 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=191.7
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCc----HHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSN----IAALVQLLTA-TSPRIREKTVTVICSLAESG 227 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~----v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~ 227 (534)
+......+..|..++.-....+...+..++...... ++.+. ...|-..+++ .+++...-++++|..+...+
T Consensus 113 ~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ 188 (442)
T KOG2759|consen 113 RTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD 188 (442)
T ss_pred ccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc
Confidence 333556677777777766666666666666533321 11112 2334445555 55788899999999999999
Q ss_pred chhHHHHhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHH
Q 009471 228 SCENWLVSEGVLPPLIRLVES--GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGD-SVSQAAAACTLKN 304 (534)
Q Consensus 228 ~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~-~~~~~~a~~aL~n 304 (534)
+.|..++.++++..+++.+.+ .+..++...+-+++-|+.++..++.+...+.|+.|..+++... ..+.+-++.+++|
T Consensus 189 eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~N 268 (442)
T KOG2759|consen 189 EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRN 268 (442)
T ss_pred chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999943 3888999999999999999999988877899999999998643 4566788999999
Q ss_pred ccCCc-------hHHHHHHhhCcHHHHHHHhhcCC-ChhHH-------HHHHHHHHHHccCChHHHHHHH----------
Q 009471 305 ISAVP-------EVRQMLAEEGIVSVMIKLLDCGI-LLGSK-------EYAAECLQNLTASNENLRRSVV---------- 359 (534)
Q Consensus 305 La~~~-------~~~~~i~e~g~i~~L~~ll~~~~-~~~v~-------~~a~~~L~~La~~~~~~~~~i~---------- 359 (534)
+.... +....|+..++.+.+-.+-+.+- ++++. +.--.-...+++. ++....+.
T Consensus 269 ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSF-DeY~sEl~sG~L~WSP~H 347 (442)
T KOG2759|consen 269 LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSF-DEYKSELRSGRLEWSPVH 347 (442)
T ss_pred HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccH-HHHHHHHHhCCcCCCccc
Confidence 98754 34455666665555544443222 22222 2222223333331 11111111
Q ss_pred --------------h--cCChHHHHHhhcC---CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHH
Q 009471 360 --------------S--EGGIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQ 418 (534)
Q Consensus 360 --------------~--~g~l~~L~~~L~~---~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~ 418 (534)
+ -..+..|+.+|+. |.+...|+.=|+...+ |+....+...|+=..++++|.+++++|+.
T Consensus 348 k~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry 427 (442)
T KOG2759|consen 348 KSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRY 427 (442)
T ss_pred cccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHH
Confidence 1 1346778888864 6678889999999998 78888888899999999999999999999
Q ss_pred HHHHHHHHhc
Q 009471 419 AAASALCRVC 428 (534)
Q Consensus 419 ~A~~aL~~la 428 (534)
+|+.++..+-
T Consensus 428 ~ALlavQ~lm 437 (442)
T KOG2759|consen 428 HALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 56
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.3e-06 Score=79.55 Aligned_cols=354 Identities=15% Similarity=0.168 Sum_probs=238.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHh----HHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKN----VLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE 230 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~----~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~ 230 (534)
+.+.|-.-|..++..+|.-++..+..++.+.+.+ ...+++.+..+.++..+..+|.++...|...+..++..+..-
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 3455555566778888999999999998876633 234567889999999999999999999999999999999888
Q ss_pred HHHHhcCCHHHH--HHHHccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHcc
Q 009471 231 NWLVSEGVLPPL--IRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNIS 306 (534)
Q Consensus 231 ~~l~~~g~i~~L--v~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa 306 (534)
+.++..+....+ .++--..+.-++......+..+.. +++.....-..|.+..|..-++. .|.-++..+......|+
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 888888766554 334444566678888888877754 45556666668888888777765 67778888999999999
Q ss_pred CCchHHHHHHhhCcHHHHHHHhhcCCC-hhHHHHHHHHHHHHccCChHHHHHHHhcC-------ChHHHHHhh--cCCch
Q 009471 307 AVPEVRQMLAEEGIVSVMIKLLDCGIL-LGSKEYAAECLQNLTASNENLRRSVVSEG-------GIRSLLAYL--DGPLP 376 (534)
Q Consensus 307 ~~~~~~~~i~e~g~i~~L~~ll~~~~~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g-------~l~~L~~~L--~~~~~ 376 (534)
..+..++.+..+|.|+.+..++...+. +--+..++.....+-. +... ..+..+. .++..++++ ++|+.
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg-keai-mdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG-KEAI-MDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc-chHH-hhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 988889999999999999999853332 1234444444444332 1111 0111111 133333443 34888
Q ss_pred HHHHHHHHHHhhc-CccHHHHHhcCc--HHHHHHHHhcC-CHHHHHHHHHHHHHhcCC----h----h------HHHHHH
Q 009471 377 QESAVGALRNLVG-SVSQEVLISLGF--FPRLVHVLKAG-SLGAQQAAASALCRVCTS----A----E------MKKLVG 438 (534)
Q Consensus 377 ~~~a~~aL~~La~-~~~~~~l~~~~~--i~~Lv~lL~~~-~~~v~~~A~~aL~~la~~----~----~------~~~~i~ 438 (534)
++.|+.+++.+-+ .+..+.+..+|- ..+++.-.-+. ...-|..+..+|.+++.. + + .+..+.
T Consensus 321 ieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif 400 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF 400 (524)
T ss_pred HHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence 9999999999998 556666666553 33333333222 235567777888888753 1 1 111222
Q ss_pred hc-------CchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCC-C-CchhHHHHHHHHHH
Q 009471 439 EA-------GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP-S-PQNTAKKYAVACLA 509 (534)
Q Consensus 439 ~~-------g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~-~~~~~k~~a~~~L~ 509 (534)
+. .-...+..+++.+.++++..+...+..++..+...++++...+.+...+.--.. . -..+.|..+++++.
T Consensus 401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAia 480 (524)
T KOG4413|consen 401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIA 480 (524)
T ss_pred HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence 11 234456677778899999999999999999999999999887877765533221 1 12235555555554
Q ss_pred h
Q 009471 510 S 510 (534)
Q Consensus 510 ~ 510 (534)
+
T Consensus 481 e 481 (524)
T KOG4413|consen 481 E 481 (524)
T ss_pred H
Confidence 4
No 57
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.4e-06 Score=80.74 Aligned_cols=292 Identities=19% Similarity=0.222 Sum_probs=193.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh--cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
...++..+++.++.++..|+..+..+... . . +.+. +...++.+.++++..++ .+.|+.+|.|++.++..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~-~-~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G-L-QSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-c-h-hhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 45688889999999999999999999865 1 1 2222 23458888999988776 778889999999999888888
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-------CCChHHHHHHHccCCh--HHHHHHHHHHHH
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-------HGGVRPLIEICQTGDS--VSQAAAACTLKN 304 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-------~g~i~~Lv~ll~~~~~--~~~~~a~~aL~n 304 (534)
.+. .+..++..+.+.........+..|.||+..++....+.. .|.++.....+..+-. .--.+.+-++.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 777 778888888877666778889999999998777654432 3444455555654322 223567788999
Q ss_pred ccCCchHHHHHHhhCcHHH--HHHHhhcCCChhH-HHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHH
Q 009471 305 ISAVPEVRQMLAEEGIVSV--MIKLLDCGILLGS-KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAV 381 (534)
Q Consensus 305 La~~~~~~~~i~e~g~i~~--L~~ll~~~~~~~v-~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~ 381 (534)
|+..+..|..+.+...++. +..+ .+.+. .+ +...++.|.|+|+..... ..+... .+..+-
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s-~vRr~GvagtlkN~cFd~~~h-~~lL~e-~~~lLp------------- 221 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDS-QVRRGGVAGTLKNCCFDAKLH-EVLLDE-SINLLP------------- 221 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcc-cccch-hhhccchHHHHHhhhccchhH-HHHhcc-hHHHHH-------------
Confidence 9999999999888653332 2222 23232 34 556889999999854433 333331 122221
Q ss_pred HHHHHhhcCc--cHHHHHhcCcHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CC
Q 009471 382 GALRNLVGSV--SQEVLISLGFFPRLVHVLK-----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AK 453 (534)
Q Consensus 382 ~aL~~La~~~--~~~~l~~~~~i~~Lv~lL~-----~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~ 453 (534)
..|.-++.+. +.+.+ .+.-..| ++|. ..++.+++.-..+|.-|+.....|+.+++.|+-+.+-.+=+ .+
T Consensus 222 ~iLlPlagpee~sEEdm--~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ 298 (353)
T KOG2973|consen 222 AILLPLAGPEELSEEDM--AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEE 298 (353)
T ss_pred HHHhhcCCccccCHHHH--hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCC
Confidence 2222233311 11111 1222333 6663 45789999999999999999999999999886665555544 45
Q ss_pred ChHHHHHHHHHHHHhcCCCc
Q 009471 454 PNSVREVAAQAISSLVTLPQ 473 (534)
Q Consensus 454 ~~~v~~~A~~aL~~L~~~~~ 473 (534)
++++++..-.....+....+
T Consensus 299 ded~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 299 DEDIREACEQVVQMLVRLEP 318 (353)
T ss_pred cHHHHHHHHHHHHHHHhccc
Confidence 67776665555555544333
No 58
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=4.6e-06 Score=78.92 Aligned_cols=260 Identities=17% Similarity=0.205 Sum_probs=178.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH--hCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH
Q 009471 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV--GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA 316 (534)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~--~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~ 316 (534)
...++.++.+.++.++..|..-+..++.. .-+.+. +.-.++.+..++...++ -..|+.+|.|++..++.++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34578899999999999999999999876 222222 24456778888887666 5678999999999999999988
Q ss_pred hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh-----cCChHHHHHhh-cC----CchHHHHHHHHHH
Q 009471 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS-----EGGIRSLLAYL-DG----PLPQESAVGALRN 386 (534)
Q Consensus 317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~-----~g~l~~L~~~L-~~----~~~~~~a~~aL~~ 386 (534)
.. .+..++..+.++.. ..-...+..|.|++..++........ ..++..++... +. ..--....-++.|
T Consensus 81 ~~-~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 87 88888888887766 67888999999999977665543332 13444444443 33 1224556778888
Q ss_pred hhc-CccHHHHHhcCc--HHHHHHHHhcCCHHHH-HHHHHHHHHhcCChhHHHHHHhcCchHHHH---------------
Q 009471 387 LVG-SVSQEVLISLGF--FPRLVHVLKAGSLGAQ-QAAASALCRVCTSAEMKKLVGEAGCTPLLI--------------- 447 (534)
Q Consensus 387 La~-~~~~~~l~~~~~--i~~Lv~lL~~~~~~v~-~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv--------------- 447 (534)
|++ ...+..+.+... ...++.+ .+.+..++ ...+++|.|.+....+...+...+ +..|.
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~-~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDES-INLLPAILLPLAGPEELSEE 236 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcch-HHHHHHHHhhcCCccccCHH
Confidence 887 555655555442 2223333 33445555 456788888887655555544422 22222
Q ss_pred ---------Hhhc-----CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCC-chhHHHHHHHHH
Q 009471 448 ---------KLLE-----AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSP-QNTAKKYAVACL 508 (534)
Q Consensus 448 ---------~ll~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~~~k~~a~~~L 508 (534)
+++. .+++.+|.+-.++|..|+....+|+.+.. .++.++++.++... +++++..+-...
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~--kgvYpilRElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS--KGVYPILRELHKWEEDEDIREACEQVV 310 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh--cCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3332 35689999999999999999999887765 78899999998874 444555544433
No 59
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.57 E-value=4.5e-06 Score=82.84 Aligned_cols=241 Identities=19% Similarity=0.194 Sum_probs=176.4
Q ss_pred HHHHHhCCChHHHHHHHccCChHH--HHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471 271 ARAIVGHGGVRPLIEICQTGDSVS--QAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (534)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~~~~~~--~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La 348 (534)
+..+...|++..|++++..++.+. +..|...|..+.. .++++.++..| +..++.+.+...+.+.+...+.+|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 345666899999999999876654 7888888887664 47888888866 6666666655555578899999999999
Q ss_pred cCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc---CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 009471 349 ASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASA 423 (534)
Q Consensus 349 ~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~a 423 (534)
.+++...+.++..|+++.++-..+. |.+..+|.-+|+|++. ......+++...-+.|+.+-.+.+.-.+..||.+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 9999999999999999998887754 7888999999999997 3556788898899999998888888999999999
Q ss_pred HHHhcCChhHHHHHHhcCc---hHHHHHh----------------------------hcCCChHHHHHHHHHHHHhc--C
Q 009471 424 LCRVCTSAEMKKLVGEAGC---TPLLIKL----------------------------LEAKPNSVREVAAQAISSLV--T 470 (534)
Q Consensus 424 L~~la~~~~~~~~i~~~g~---v~~Lv~l----------------------------l~~~~~~v~~~A~~aL~~L~--~ 470 (534)
++.++.+.++-+.+...|. +++|+.. +++..-+.|..++.-++.=+ .
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIK 410 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIK 410 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHH
Confidence 9999988776666655553 2333333 33222222222222222111 1
Q ss_pred CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
...+.-..+++-|.+..|-++..+. ++..-++|..+|+-+-+.
T Consensus 411 s~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 411 SLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEE 453 (832)
T ss_pred HhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccc
Confidence 2345556677778888888887754 556778888888877655
No 60
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.4e-05 Score=84.01 Aligned_cols=311 Identities=16% Similarity=0.142 Sum_probs=204.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHH-HH
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMAR-AI 274 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~-~l 274 (534)
++.+-+-++++|..-|+.|+.+++.+-..++ .+..=...+++|.++.++.+.+-.++..++|+|..++.. ++.+. ..
T Consensus 366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~ 445 (859)
T KOG1241|consen 366 LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQE 445 (859)
T ss_pred HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHh
Confidence 3333335677889999999999999987765 444445668899999999999999999999999999875 32221 12
Q ss_pred HhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-----hH-HHHHHh---hCcHHHHHHHhh--cCCChhHHHHHHHH
Q 009471 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-----EV-RQMLAE---EGIVSVMIKLLD--CGILLGSKEYAAEC 343 (534)
Q Consensus 275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-----~~-~~~i~e---~g~i~~L~~ll~--~~~~~~v~~~a~~~ 343 (534)
.-.+.++.++.-+. ..|.+-..+||++.+|+..- .+ .....+ ..++..|++.-. +++....|..+..+
T Consensus 446 ~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 446 LLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred hhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 22344555655554 47889999999999998421 11 111111 123334444432 33434679999999
Q ss_pred HHHHccCChHHHHHHHhcC---ChHHHHH-----hhcC------CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHH
Q 009471 344 LQNLTASNENLRRSVVSEG---GIRSLLA-----YLDG------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVH 407 (534)
Q Consensus 344 L~~La~~~~~~~~~i~~~g---~l~~L~~-----~L~~------~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~ 407 (534)
|+.+....+...-.++..- ....|-+ .+.. .+++..-+.+|..+.+ ...... ....++..+++
T Consensus 525 LmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~-~~d~iM~lflr 603 (859)
T KOG1241|consen 525 LMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE-VSDQIMGLFLR 603 (859)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHHHHH
Confidence 9999875543222221110 1111111 2211 2456777888888876 222222 23446788888
Q ss_pred HHhc-CCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcCC-CcchHHHHhhC
Q 009471 408 VLKA-GSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTL-PQNCREVKRDD 482 (534)
Q Consensus 408 lL~~-~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~ 482 (534)
++++ ++..+++.|..+++.++.+ ..+.+++ ..+.|.|..-++ ..+..+...|.+....|+.. ..+...+..
T Consensus 604 i~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d-- 679 (859)
T KOG1241|consen 604 IFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD-- 679 (859)
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH--
Confidence 8887 5567899999999999865 6777777 557888877774 55677888888888888744 334344433
Q ss_pred CCHHHHHhhcCCCC-chhHHHHHHHHHHhhchh
Q 009471 483 KSVPNLVQLLDPSP-QNTAKKYAVACLASLSPS 514 (534)
Q Consensus 483 ~~v~~Lv~lL~~~~-~~~~k~~a~~~L~~L~~~ 514 (534)
..+..|++.|.++. ...+|-..++++..++..
T Consensus 680 ~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 680 ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 67788999999872 345888888888888766
No 61
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.8e-05 Score=80.52 Aligned_cols=336 Identities=15% Similarity=0.108 Sum_probs=210.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHH-HHHHHHHHHHHhhcCCchhHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPR-IREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~-v~~~A~~~L~~La~~~~~~~~l 233 (534)
..+.+.+.+.+++...+..+...+..+..+..- ..+.+.+.+..|.+.+.+.... -++.+.-+......+-. ..
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~ 209 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PP 209 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CC
Confidence 455566667777888888888888888765542 2445567888888888776533 33323222222222111 11
Q ss_pred HhcCCHHHHHHH---HccCCHHHHHHHHHHHHHhhcC-h-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471 234 VSEGVLPPLIRL---VESGSTVGKEKATISLQRLSMS-A-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 234 ~~~g~i~~Lv~l---L~~~~~~~~~~A~~~L~~Ls~~-~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~ 308 (534)
++..+++.+-.+ ..+....++..|..+...+-.. + .....+ ++.++.-+.+..|..+.+++..|..++..
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~l-----lpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLL-----LPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHh-----hhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 233334444444 4455777888777776665322 2 222222 25555444445888999999999998876
Q ss_pred chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc--CChHHHHHHHhcCChHHHHHhhcCCc-hHHHHHHHHH
Q 009471 309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA--SNENLRRSVVSEGGIRSLLAYLDGPL-PQESAVGALR 385 (534)
Q Consensus 309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~--~~~~~~~~i~~~g~l~~L~~~L~~~~-~~~~a~~aL~ 385 (534)
...+-......++|.+.+.+.+..+ ++++.+..+|..++. .++... ..++.|++.+.+|. ....++..|+
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT~~-evr~a~~~~l~~~~svidN~dI~------~~ip~Lld~l~dp~~~~~e~~~~L~ 357 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDTKP-EVRKAGIETLLKFGSVIDNPDIQ------KIIPTLLDALADPSCYTPECLDSLG 357 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccCCH-HHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhcCcccchHHHHHhhc
Confidence 6555566668899999999998887 899999999999987 233322 13778888888876 5666666666
Q ss_pred Hhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChh----HHHHHHhcCchHHHHHhhcCCChHHHHH
Q 009471 386 NLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE----MKKLVGEAGCTPLLIKLLEAKPNSVREV 460 (534)
Q Consensus 386 ~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~----~~~~i~~~g~v~~Lv~ll~~~~~~v~~~ 460 (534)
.=.. ...... .-.-++|.|-+-+...+....+.++.++.|++.--+ ....+ ...+|.|-..+....|++|..
T Consensus 358 ~ttFV~~V~~p-sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 358 ATTFVAEVDAP-SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred ceeeeeeecch-hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHHHH
Confidence 5544 111000 001135556666677788899999999999996422 22333 224556666666678999999
Q ss_pred HHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 461 AAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 461 A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+..+|+.+.....+... .+.++.+...+.+......+..+...|..+..+
T Consensus 435 aarAL~~l~e~~g~~~f----~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 435 AARALGALLERLGEVSF----DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAG 484 (569)
T ss_pred HHHHHHHHHHHHHhhcc----cccccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence 99999988655444332 355666776665543333444555555444443
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.37 E-value=6.9e-05 Score=76.73 Aligned_cols=218 Identities=16% Similarity=0.091 Sum_probs=139.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhC
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH 277 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~ 277 (534)
+..|+..|.+.++.++..++.+|+.+-. ....+.|+.+|++.++.++..+..++.... .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~ 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------H 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------c
Confidence 6778888887777788888888865432 234677778888888877777766665522 1
Q ss_pred CChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHH
Q 009471 278 GGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS 357 (534)
Q Consensus 278 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~ 357 (534)
...+.+..++++.++.++..++.+|..+.. ...++.|...+.+.++ .++..|+.++..+.. +.
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~-~VR~aA~~al~~lG~--~~---- 209 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDP-EVRFAALEAGLLAGS--RL---- 209 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCH-HHHHHHHHHHHHcCC--Hh----
Confidence 123567777888888888888888876553 3445556666666665 788888888866643 21
Q ss_pred HHhcCChHHHHHhhcC-CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHH
Q 009471 358 VVSEGGIRSLLAYLDG-PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKL 436 (534)
Q Consensus 358 i~~~g~l~~L~~~L~~-~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~ 436 (534)
.+..+..+... ...+...+.++..+.. ....++.|..+++... ++..++.+++.+..
T Consensus 210 -----A~~~l~~~~~~~g~~~~~~l~~~lal~~--------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------- 267 (410)
T TIGR02270 210 -----AWGVCRRFQVLEGGPHRQRLLVLLAVAG--------GPDAQAWLRELLQAAA--TRREALRAVGLVGD------- 267 (410)
T ss_pred -----HHHHHHHHHhccCccHHHHHHHHHHhCC--------chhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------
Confidence 13344443322 2222222222222222 1246777888876644 88888888887764
Q ss_pred HHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471 437 VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480 (534)
Q Consensus 437 i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (534)
...++.|++.+.... ++..|.+++..|.+-.-....+..
T Consensus 268 ---p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~l~~~~l~~ 306 (410)
T TIGR02270 268 ---VEAAPWCLEAMREPP--WARLAGEAFSLITGMDVALEELAG 306 (410)
T ss_pred ---cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCCcchhhhcc
Confidence 356888888887443 888899999888766555455543
No 63
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=6.7e-06 Score=68.31 Aligned_cols=131 Identities=18% Similarity=0.130 Sum_probs=111.9
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 009471 198 IAALVQLL-TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG 276 (534)
Q Consensus 198 v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~ 276 (534)
+..|+.-. ...+.+.++....-|.|++.++.+...+.+.++++.++..|+..+..+.+.+...|+|+|.++.++..|.+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e 97 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence 44444332 34578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHh
Q 009471 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLL 328 (534)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll 328 (534)
.+|++..+..+.++...+...++.++..|+..+ ..+..+....++..+...-
T Consensus 98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 999999999999988888999999999999865 5666666666666655443
No 64
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.35 E-value=0.00019 Score=72.67 Aligned_cols=326 Identities=17% Similarity=0.146 Sum_probs=212.2
Q ss_pred HHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC--CHH
Q 009471 175 LDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STV 252 (534)
Q Consensus 175 ~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~ 252 (534)
+..|..+.+..+.-+..+.-....+.+..++-+++.++|..+.+++..+..+.+.-..+.+.++--.+++-|..+ +..
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 456677777777554444333345555544444459999999999999999999888999999888888888765 444
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCC
Q 009471 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI 332 (534)
Q Consensus 253 ~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~ 332 (534)
-+++|...+..+...+..... ...|.+..++.+..+.++..+..|..+|+.++.. +-+.+.+.|++..+++.+-++.
T Consensus 84 ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGS 160 (371)
T ss_pred HHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhcc
Confidence 678999999888665333222 2456679999999999999999999999999873 2245567999999999998877
Q ss_pred ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC-----------chHHHHHHHHHHhhcC-ccHHHHH-h-
Q 009471 333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP-----------LPQESAVGALRNLVGS-VSQEVLI-S- 398 (534)
Q Consensus 333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~-----------~~~~~a~~aL~~La~~-~~~~~l~-~- 398 (534)
. +..+..+.++..+-. ++..|+.+...--++.++.-+.+. +....+..++..+-++ ..--.+. +
T Consensus 161 ~-~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 161 F-SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred H-hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 6 688888888888886 667776665545566666654331 1223344444444331 1111111 1
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHH------HHhcCchHHHHHhh----------cC---CChH-
Q 009471 399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKL------VGEAGCTPLLIKLL----------EA---KPNS- 456 (534)
Q Consensus 399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~------i~~~g~v~~Lv~ll----------~~---~~~~- 456 (534)
...+..|+..|..+++.++......+..+-+- +..... +...|.+..-.++- .. +..+
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l 318 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNL 318 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccH
Confidence 24688899999999999999999999988642 221111 11112210001111 00 0111
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHH
Q 009471 457 VREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSAR 516 (534)
Q Consensus 457 v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k 516 (534)
+..+.+-.+.- +-+.|.++.|+++...+++......|...|..+-.-+.
T Consensus 319 ~~~y~aLll~i-----------li~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la~ 367 (371)
T PF14664_consen 319 VNHYLALLLAI-----------LIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLAS 367 (371)
T ss_pred HHHHHHHHHHH-----------HHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 11222222222 23579999999999998666788888888877655443
No 65
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.32 E-value=0.00011 Score=75.22 Aligned_cols=210 Identities=16% Similarity=0.029 Sum_probs=153.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHh
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (534)
+..++..|...++.++..++.+|..+- ..+..+.|+.+|++.++.+|..++.++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 677777777777777877777776532 2356888999999999999998887777632
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHH
Q 009471 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML 315 (534)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (534)
....+.+..+|++.++.++..|+.+|..+.. ...++.|...+.+.++.++..|++++..+..
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------- 207 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------- 207 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence 2236789999999999999999999999754 3445678888999999999999999976643
Q ss_pred HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHH
Q 009471 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEV 395 (534)
Q Consensus 316 ~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~ 395 (534)
..++..+..+...... ........++... . ++ ..++.|..+++++.++..++.+++.+-.
T Consensus 208 --~~A~~~l~~~~~~~g~-~~~~~l~~~lal~-~-~~---------~a~~~L~~ll~d~~vr~~a~~AlG~lg~------ 267 (410)
T TIGR02270 208 --RLAWGVCRRFQVLEGG-PHRQRLLVLLAVA-G-GP---------DAQAWLRELLQAAATRREALRAVGLVGD------ 267 (410)
T ss_pred --HhHHHHHHHHHhccCc-cHHHHHHHHHHhC-C-ch---------hHHHHHHHHhcChhhHHHHHHHHHHcCC------
Confidence 2345555553333332 2333333333332 1 22 3477888899888899999999998764
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 396 LISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 396 l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
...++.|+..+.... +...|..++..|+.-
T Consensus 268 ---p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 268 ---VEAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred ---cchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 346788888885443 999999999999864
No 66
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00033 Score=73.92 Aligned_cols=343 Identities=15% Similarity=0.145 Sum_probs=209.0
Q ss_pred HhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc------------hh
Q 009471 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS------------CE 230 (534)
Q Consensus 163 L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~------------~~ 230 (534)
-++.|.+.+..|+..|..+..-.-++...-++....+.-+.-++++++++...+++.=++++..+- ..
T Consensus 226 tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~ 305 (859)
T KOG1241|consen 226 TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGL 305 (859)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 367788889999999999876443333333343445555667788899999999999888876431 00
Q ss_pred ----HHHH---hcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHH
Q 009471 231 ----NWLV---SEGVLPPLIRLVESG-------STVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVS 294 (534)
Q Consensus 231 ----~~l~---~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~ 294 (534)
..+. -.+++|.|+++|... +......|..+|.-++.. ++... .+++-+-+-++++|+.-
T Consensus 306 ~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-----~Vl~Fiee~i~~pdwr~ 380 (859)
T KOG1241|consen 306 PPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-----HVLPFIEENIQNPDWRN 380 (859)
T ss_pred CchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-----hhHHHHHHhcCCcchhh
Confidence 1111 125778888888652 223444555556555432 22111 12233334677899999
Q ss_pred HHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHH-HHHhcCChHHHHHhhc
Q 009471 295 QAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR-SVVSEGGIRSLLAYLD 372 (534)
Q Consensus 295 ~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~-~i~~~g~l~~L~~~L~ 372 (534)
+..++.++..+-.++ ..+-.=...++++.++.++.++.. -++..+.++++.++...++.+. ...-...++.+++-|.
T Consensus 381 reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl-~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL-WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh-hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 999999999998877 334444457889999999986665 6889999999999986554321 1223345666777666
Q ss_pred C-CchHHHHHHHHHHhhc--C----cc-HHHHHhcCcHHHHHHH-Hh-----c-CCHHHHHHHHHHHHHhcCC-hhHH-H
Q 009471 373 G-PLPQESAVGALRNLVG--S----VS-QEVLISLGFFPRLVHV-LK-----A-GSLGAQQAAASALCRVCTS-AEMK-K 435 (534)
Q Consensus 373 ~-~~~~~~a~~aL~~La~--~----~~-~~~l~~~~~i~~Lv~l-L~-----~-~~~~v~~~A~~aL~~la~~-~~~~-~ 435 (534)
+ |.+-.+++|++.+|+. . .+ ...... .+.+.++.- +. + .....|..|-.+|..+..+ ++.. .
T Consensus 460 DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 460 DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 5 8999999999999995 1 11 001111 233444433 22 1 2357888999999999865 3322 2
Q ss_pred HHHhc--CchHHHHHhhc-----C----CChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCchhHHHH
Q 009471 436 LVGEA--GCTPLLIKLLE-----A----KPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY 503 (534)
Q Consensus 436 ~i~~~--g~v~~Lv~ll~-----~----~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~ 503 (534)
.+... -.+..|-+.++ . ...+++..-+..|..+... .+..++... ..+..+++++++..+..+..-
T Consensus 539 ~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d--~iM~lflri~~s~~s~~v~e~ 616 (859)
T KOG1241|consen 539 MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD--QIMGLFLRIFESKRSAVVHEE 616 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH--HHHHHHHHHHcCCccccchHH
Confidence 22110 01111222221 1 1255677777777777633 444444433 567788899998533345555
Q ss_pred HHHHHHhhchh
Q 009471 504 AVACLASLSPS 514 (534)
Q Consensus 504 a~~~L~~L~~~ 514 (534)
|..++..|+.+
T Consensus 617 a~laV~tl~~~ 627 (859)
T KOG1241|consen 617 AFLAVSTLAES 627 (859)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 67
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.9e-06 Score=84.66 Aligned_cols=270 Identities=16% Similarity=0.146 Sum_probs=184.3
Q ss_pred HHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh
Q 009471 190 LAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA 268 (534)
Q Consensus 190 ~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~ 268 (534)
.-+.+...++.|+++|+.++..+.--+...++++.-. +.-+..+.+.|++..|+.++.+.+..++....|.|+++-.+.
T Consensus 425 TgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3445667899999999998777777778888888654 447888999999999999999988899999999999997764
Q ss_pred hh--HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc----hHHHHHHh----hCcHHHHHHHhhcCCChhHHH
Q 009471 269 EM--ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP----EVRQMLAE----EGIVSVMIKLLDCGILLGSKE 338 (534)
Q Consensus 269 ~~--~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~----~~~~~i~e----~g~i~~L~~ll~~~~~~~v~~ 338 (534)
++ +-.+.+..|+..++.++.++...++..+...|+|+..+. +.+..+.. .-....+++.++..++.+ ..
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~-i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME-IL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh-hh
Confidence 43 456778899999999999999999999999999998743 22222211 124566777777777744 45
Q ss_pred HHHHHHHHHccCChHHHHHHH-hcCChHHHHHhhcC--------Cc-----hHHHHHHHHHHhhcCccHHHHHhcCcHHH
Q 009471 339 YAAECLQNLTASNENLRRSVV-SEGGIRSLLAYLDG--------PL-----PQESAVGALRNLVGSVSQEVLISLGFFPR 404 (534)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~-~~g~l~~L~~~L~~--------~~-----~~~~a~~aL~~La~~~~~~~l~~~~~i~~ 404 (534)
..+..|.+++..++..+..+. ++..+..+..+|.. |+ +.-+-.....++..+ .+...+
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~--------~d~f~r 655 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN--------SDKFKR 655 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc--------cccccc
Confidence 557888888888888887766 44555555555532 11 111111222222210 112222
Q ss_pred HHH------HHh----cCCHHHHHHHHHHHHHhcCC----h------hHHHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 009471 405 LVH------VLK----AGSLGAQQAAASALCRVCTS----A------EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA 464 (534)
Q Consensus 405 Lv~------lL~----~~~~~v~~~A~~aL~~la~~----~------~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~a 464 (534)
.+. -.+ ..+.+.-.+..|.+.|+.-. + +-.+.+.+.|+-+.|+++....++.+|+.+-.+
T Consensus 656 ~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~ta 735 (743)
T COG5369 656 LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTA 735 (743)
T ss_pred ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHH
Confidence 221 111 12345667777877776532 1 344556667766677777777888999999999
Q ss_pred HHHh
Q 009471 465 ISSL 468 (534)
Q Consensus 465 L~~L 468 (534)
|.++
T Consensus 736 L~~l 739 (743)
T COG5369 736 LENL 739 (743)
T ss_pred HHhh
Confidence 9887
No 68
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0011 Score=70.61 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=83.8
Q ss_pred hhhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 009471 148 AEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG 227 (534)
Q Consensus 148 ~~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~ 227 (534)
+.|-.+...++.-+.++..++..|.+|+-+...+....|+... -.++..-++|.+.+..|...++..+..++...
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCEKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC
Confidence 3455667777777888999999999999999999888776543 34667777787777778888888888887764
Q ss_pred c-hhHHHHhcCCHHHHHHHHcc---------------CCHHHHHHHHHHHHHhhcChhhH
Q 009471 228 S-CENWLVSEGVLPPLIRLVES---------------GSTVGKEKATISLQRLSMSAEMA 271 (534)
Q Consensus 228 ~-~~~~l~~~g~i~~Lv~lL~~---------------~~~~~~~~A~~~L~~Ls~~~~~~ 271 (534)
+ .-..+.+ .++.++..|+. .+|.++....+.|.-|..++...
T Consensus 211 ~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da 268 (866)
T KOG1062|consen 211 PDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA 268 (866)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH
Confidence 3 2222222 56667776652 36778888888888887765443
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00023 Score=72.62 Aligned_cols=314 Identities=17% Similarity=0.172 Sum_probs=193.0
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHh---------------------------------HHHHhcC-C-
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKN---------------------------------VLAVMGR-S- 196 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~---------------------------------~~~i~~~-g- 196 (534)
....+++.+.+....+...+..|+++|.++++-.... .+.++.+ .
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 4566788888888888888888998887765421110 0122211 1
Q ss_pred --cHHHHHHHhcC----CCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh
Q 009471 197 --NIAALVQLLTA----TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM 270 (534)
Q Consensus 197 --~v~~Lv~lL~~----~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 270 (534)
.++.++.+|+. .++..|...+.-|..|-..++..-.-.-...++-|...|.+++.+++..+-.++.++-..-.+
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 14455555543 467788888887777766554221111234678888999999999997776665554321111
Q ss_pred HHHHHh-CCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHH---HHH
Q 009471 271 ARAIVG-HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAEC---LQN 346 (534)
Q Consensus 271 ~~~l~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~---L~~ 346 (534)
.....+ ...++.++..++++++.++..|..-+.....-+...-...-.|++..++..+.+......++.+... +..
T Consensus 242 ~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 242 SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 111112 3456888999999999999888776666655332222222366677777777655542344444322 333
Q ss_pred HccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 009471 347 LTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASA 423 (534)
Q Consensus 347 La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~a 423 (534)
+.. .+...+.+--...++.+.+.+.+ .+++..++.-+..|-. ..+.-......+.+.|+.-|.+.+..|...+...
T Consensus 322 l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 322 LVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred HHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 332 12222121112345666667755 5677777777777766 4444445567789999999999999999999999
Q ss_pred HHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 424 LCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 424 L~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
+.++|.+++.... -.++..|.++......-+..++.-++..|+
T Consensus 401 la~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 401 LASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred HHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 9999987544322 123445555555555556777888888876
No 70
>PF05536 Neurochondrin: Neurochondrin
Probab=98.21 E-value=0.0001 Score=78.63 Aligned_cols=230 Identities=19% Similarity=0.182 Sum_probs=163.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH---hHHHHhcCCcHHHHHHHhcC-------CCHHHHHHHHHHHHHhh
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEK---NVLAVMGRSNIAALVQLLTA-------TSPRIREKTVTVICSLA 224 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~---~~~~i~~~g~v~~Lv~lL~~-------~~~~v~~~A~~~L~~La 224 (534)
.+.+.+..|+..+.+.|..++.-+.+++..++. .++.+.+.=|.+.|-++|++ +....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 478889999999988899999999999886663 33456677778899999987 23678899999999999
Q ss_pred cCCch--hHHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471 225 ESGSC--ENWLVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (534)
Q Consensus 225 ~~~~~--~~~l~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (534)
.+++. ...++ +-||.|++++.+.+. .+...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+.....+..+
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 97762 23333 459999999988776 89999999999999999999999999999999999987 66677888888
Q ss_pred HHHccCCchHHHHHHh-----hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH-HHHHHhcCChHH----HHHhh
Q 009471 302 LKNISAVPEVRQMLAE-----EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL-RRSVVSEGGIRS----LLAYL 371 (534)
Q Consensus 302 L~nLa~~~~~~~~i~e-----~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~-~~~i~~~g~l~~----L~~~L 371 (534)
|.++....+.. ...+ ..+++.+...+..... ..+...+..|..+-...+.. ........-++. +..++
T Consensus 163 L~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~-~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 163 LLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHG-EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 88877633211 1111 2345556666655554 56777788888887644211 111222233333 33444
Q ss_pred cC---CchHHHHHHHHHHhhc
Q 009471 372 DG---PLPQESAVGALRNLVG 389 (534)
Q Consensus 372 ~~---~~~~~~a~~aL~~La~ 389 (534)
++ +.-|..++....++..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 44 3456666666666554
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0014 Score=69.74 Aligned_cols=317 Identities=14% Similarity=0.136 Sum_probs=164.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcC
Q 009471 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG 237 (534)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g 237 (534)
+.+..+.+++--.|+-.--+..-++.++.+.... .+..+.+=|++++.-+.-.|+.+|++++..+-.|+
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE~qdvllL-----ltNslknDL~s~nq~vVglAL~alg~i~s~Emard------ 142 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLL-----LTNSLKNDLNSSNQYVVGLALCALGNICSPEMARD------ 142 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccchHHHHH-----HHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHH------
Confidence 3455666666555555444444444444332211 14455555677888899999999999987665544
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHH
Q 009471 238 VLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQML 315 (534)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i 315 (534)
+.|-+.++|+..++.++..|+-|...+-.. ++....| ++....+|.+.+..+...+...+..++.. ++.-..+
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f 217 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF 217 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence 367788899999999999999888887554 3333333 24455555555555555555555555542 3333333
Q ss_pred HhhCcHHHHHHHhh----cCC----------ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--------
Q 009471 316 AEEGIVSVMIKLLD----CGI----------LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-------- 373 (534)
Q Consensus 316 ~e~g~i~~L~~ll~----~~~----------~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-------- 373 (534)
.+ .++-++..|+ .+- ++-.|...+..|+-+-.++++..+.+. +.|-++..+
T Consensus 218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTDSSKNAG 290 (866)
T ss_pred HH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhcccccccch
Confidence 32 3333444333 111 114566666666666665554443332 122222221
Q ss_pred CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcC
Q 009471 374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA 452 (534)
Q Consensus 374 ~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~ 452 (534)
..+...|+.++..+-.+..-.. -.+..|-++|.+.+..++..|+..|...... +...+. + =..+++.+++
T Consensus 291 nAILYE~V~TI~~I~~~~~Lrv----lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr---H--r~tIleCL~D 361 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNSGLRV----LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR---H--RSTILECLKD 361 (866)
T ss_pred hHHHHHHHHHHHhccCCchHHH----HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH---H--HHHHHHHhcC
Confidence 1123333333333332111100 1244455555555555555555555555532 111100 0 1233455666
Q ss_pred CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 453 ~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
++..++.+|++.++.| .+..|.+.+++ .|+..|+.. +++.|...+.-+..+++.
T Consensus 362 pD~SIkrralELs~~l-vn~~Nv~~mv~------eLl~fL~~~-d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 362 PDVSIKRRALELSYAL-VNESNVRVMVK------ELLEFLESS-DEDFKADIASKIAELAEK 415 (866)
T ss_pred CcHHHHHHHHHHHHHH-hccccHHHHHH------HHHHHHHhc-cHHHHHHHHHHHHHHHHh
Confidence 6666666666655555 45555444443 244444444 334555555555555443
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00015 Score=76.80 Aligned_cols=334 Identities=17% Similarity=0.134 Sum_probs=186.3
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
..-.+.++...++.+++.+|..+.....++-..++ ..+.+.|.++.|-.++.++++.+...|+.+|..+.+...+..
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 44567888889999999999999998888876555 456678999999999999999999999999999987664311
Q ss_pred -HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471 232 -WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (534)
Q Consensus 232 -~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (534)
.....-.+..++..+...+...+.....++.+=...++ ....++ ..+...+.+.++.+...+..++.++....
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~-----~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDIC-----ERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHH-----HHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 11111123333344443333333333333333323333 233443 56666677777777777777777776533
Q ss_pred hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhc
Q 009471 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG 389 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~ 389 (534)
...........-+.++-++..+. +.+..++.-+..+-...+.. +....---++++.+.--++..=+.++..++.
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~~--e~qyvaLrNi~lil~~~p~~----~~~~~~~Ff~kynDPiYvK~eKleil~~la~ 344 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSES--EIQYVALRNINLILQKRPEI----LKVEIKVFFCKYNDPIYVKLEKLEILIELAN 344 (734)
T ss_pred HHHHHHHHHHhcccceeeecccc--hhhHHHHhhHHHHHHhChHH----HHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence 22223333445556666665544 46665555554444433321 1100000001111111234444555555554
Q ss_pred CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
..+..+ ++.-+...-..-+.+..+.+.+++++++...+-. .+++..|+++++.+-..+...+...++.+.
T Consensus 345 ~~nl~q-----vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dil 414 (734)
T KOG1061|consen 345 DANLAQ-----VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDIL 414 (734)
T ss_pred HhHHHH-----HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhh
Confidence 322222 3444445555556677777777777776431111 566777777777555555556666666666
Q ss_pred CCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
..-++.-+ ..+..+...+++=.+++.|.+-+|.+.--+..
T Consensus 415 RkyP~~~~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 415 RKYPNKYE-----SVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred hcCCCchh-----hhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 44333211 12233334444433445666666666655544
No 73
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0016 Score=69.14 Aligned_cols=139 Identities=13% Similarity=0.162 Sum_probs=95.0
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
...+++..+....+.+.+.|.-.--.|...+.++++- .+ =-|..+-+-|+++++.+|..|+++|..+-.
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--AL---LSIntfQk~L~DpN~LiRasALRvlSsIRv------ 137 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--AL---LSINTFQKALKDPNQLIRASALRVLSSIRV------ 137 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--ee---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch------
Confidence 4557888888889999999988888888888776643 11 238889999999999999999999876521
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh-cChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls-~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (534)
.++..=++-.+-+...+..+.+|..|+.++-.|= .+++.+.++. ..+-.+|.+.+|.+...|+.+...+|
T Consensus 138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 1111112233334455678889999999998883 4455454443 55556677776666655555554444
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=4.4e-05 Score=77.72 Aligned_cols=312 Identities=15% Similarity=0.146 Sum_probs=202.4
Q ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh--hhHH
Q 009471 195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--EMAR 272 (534)
Q Consensus 195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~--~~~~ 272 (534)
++.+++.+..+.+++..+|-.|+..+.+++.-........-..+...+.++..+.+..++. ++..|-.+-.+- +...
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccccc
Confidence 3779999999999999999999999999986544333333344577788888777776664 555665554321 1121
Q ss_pred HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHH----c
Q 009471 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL----T 348 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~L----a 348 (534)
.|.-.+.||.|-+.+...+|..|.....-|.-|-..|+....=.-...++-|+..|.+.++ +++..+=.+|.++ .
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~-eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSD-EVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHh
Confidence 3333445566666666778999988888887776666432221225677888899988887 7886655544443 3
Q ss_pred cCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHH-HHHHHH---
Q 009471 349 ASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLG-AQQAAA--- 421 (534)
Q Consensus 349 ~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~-v~~~A~--- 421 (534)
+..... --...++.++.-+.+ +.+|..|+.-|..+.. +...-...-.|++..++.++.+.++. ++..+.
T Consensus 241 s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 241 SSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred cCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 322211 123346666666655 5678888888877776 32222233456677777777665542 333332
Q ss_pred HHHHHhcCChhHHHHHHhc-CchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhH
Q 009471 422 SALCRVCTSAEMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTA 500 (534)
Q Consensus 422 ~aL~~la~~~~~~~~i~~~-g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~ 500 (534)
..+..+...+.....+ +. ..+..|.+.+.+...+.|..++.-+..|-...+|.-.... +.....|+.-|... +.++
T Consensus 317 ~~l~~l~s~~~~~~~i-d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLsd~-sd~v 393 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEEI-DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLSDR-SDEV 393 (675)
T ss_pred HHHHHHHhhhhhcccc-chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhcCc-hhHH
Confidence 3344454443333332 22 3577888888889999999999989888777777444433 46777888777765 3478
Q ss_pred HHHHHHHHHhhchhH
Q 009471 501 KKYAVACLASLSPSA 515 (534)
Q Consensus 501 k~~a~~~L~~L~~~~ 515 (534)
...+...+.+++.+.
T Consensus 394 vl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 394 VLLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHHHHhcCc
Confidence 899999999999883
No 75
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0042 Score=66.12 Aligned_cols=280 Identities=13% Similarity=0.123 Sum_probs=189.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHh
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (534)
-.+|.+.|.+.....+.+|+..+..+...+.+. . ...|..|+...+.+.+++...---|...|+..++-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-S-----~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-S-----LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 356788889999999999999998887544432 1 34678888888999999999888888888877643222
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHH
Q 009471 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQM 314 (534)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~ 314 (534)
-|..+-+-|+++++.+|..|.++|..+-...-. .. .+-++-+...+..+.+|..|+.++-.|-. +++.+.+
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsIRvp~Ia-PI-----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSIRVPMIA-PI-----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHH-HH-----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 377888899999999999888888876442111 11 11333455667889999999999988866 4454444
Q ss_pred HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcC--
Q 009471 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS-- 390 (534)
Q Consensus 315 i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~-- 390 (534)
+ +..+-.+|.+.++ -|.-.|+.+.-.+|-.. -.+++ +-...+.+++.+ ...|...+..|..-|+.
T Consensus 181 L-----~e~I~~LLaD~sp-lVvgsAv~AF~evCPer----ldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l 249 (968)
T KOG1060|consen 181 L-----EEVIKKLLADRSP-LVVGSAVMAFEEVCPER----LDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQL 249 (968)
T ss_pred H-----HHHHHHHhcCCCC-cchhHHHHHHHHhchhH----HHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcC
Confidence 3 4455566677776 78899999999888521 12222 235667777755 55677777777776661
Q ss_pred --c-cHHHHHh---------------------cCcHHHH----HHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCc
Q 009471 391 --V-SQEVLIS---------------------LGFFPRL----VHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGC 442 (534)
Q Consensus 391 --~-~~~~l~~---------------------~~~i~~L----v~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~ 442 (534)
+ ......+ ..-+..| -.+|.+.++.|...++.+.+.++-..+. .++
T Consensus 250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i 323 (968)
T KOG1060|consen 250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKI 323 (968)
T ss_pred CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHH
Confidence 1 1000111 1112223 3356788899999999999999854322 234
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 443 TPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 443 v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
++.|+++|.+ +.++|...+..+..++
T Consensus 324 ~kaLvrLLrs-~~~vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 324 AKALVRLLRS-NREVQYVVLQNIATIS 349 (968)
T ss_pred HHHHHHHHhc-CCcchhhhHHHHHHHH
Confidence 7888888874 4567777766666665
No 76
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.09 E-value=2.8e-05 Score=64.73 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=111.7
Q ss_pred CHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH
Q 009471 238 VLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA 316 (534)
Q Consensus 238 ~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~ 316 (534)
.+..|+.-... .+.+.+++...-|.|.+-++.|-..+.+.+++..++.-+..++......+.+.|+|+|.++.+.+.|.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 35555554443 58889999999999999988888889999999999999999999999999999999999999999999
Q ss_pred hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh
Q 009471 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY 370 (534)
Q Consensus 317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~ 370 (534)
+.++++.++..+.++.. .+...++..+..|+.+.-..|..+....++..+.++
T Consensus 97 ea~g~plii~~lssp~e-~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPE-ITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HhcCCceEEeecCCChH-HHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 99999999999988876 789999999999998777777777665555555444
No 77
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.08 E-value=0.0011 Score=67.16 Aligned_cols=307 Identities=18% Similarity=0.163 Sum_probs=192.8
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCchhH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
.....+...+-+++.+++..+.+.++.+.. +++....+.+.+.--.++.-|..+ +..-|++|++.+..+.......+
T Consensus 25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 25 FFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 345555555556667888777777777775 555667777766655566666654 36789999999999987654322
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchH
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV 311 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~ 311 (534)
. +..|++..++.+.++.++..+..+..+|..++..++ +.+...||++.|++.+.++........+.++..+-..|..
T Consensus 104 ~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 104 E-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred c-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence 2 256789999999999999999999999999987432 4566799999999999887777888999999999999988
Q ss_pred HHHHHhhCcHHHHHHHhhcC------CCh--hHHHHHHHHHHHHccCChHHHHHHHh-cCChHHHHHhhcCC--chHHHH
Q 009471 312 RQMLAEEGIVSVMIKLLDCG------ILL--GSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDGP--LPQESA 380 (534)
Q Consensus 312 ~~~i~e~g~i~~L~~ll~~~------~~~--~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~~L~~~--~~~~~a 380 (534)
|+.+...--+..++.-+.+. +.. +.-..+..++..+-...+..--.-.+ ..++..|+..|.-| +++...
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 88776533344444443222 111 12334445555544433332211111 25688888888764 488888
Q ss_pred HHHHHHhhc---CccHH------HHHhcCcHHHHHHHHhcCCHHHHHHHHHHH-------HHhcCC--hhHHHHHHhcCc
Q 009471 381 VGALRNLVG---SVSQE------VLISLGFFPRLVHVLKAGSLGAQQAAASAL-------CRVCTS--AEMKKLVGEAGC 442 (534)
Q Consensus 381 ~~aL~~La~---~~~~~------~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL-------~~la~~--~~~~~~i~~~g~ 442 (534)
+..+..+-. +.-.+ .....+.+..--++- ++. ......+ .++..+ .=.-..+.++|.
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~-~~~----~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL 335 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLS-SGF----AEAKSILPHRSSKRPNLVNHYLALLLAILIEAGL 335 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhc-ccc----cccccccCccccccccHHHHHHHHHHHHHHHcCh
Confidence 888888776 11111 111122210000111 000 0000000 000000 112235578999
Q ss_pred hHHHHHhhcCC-ChHHHHHHHHHHHHhc
Q 009471 443 TPLLIKLLEAK-PNSVREVAAQAISSLV 469 (534)
Q Consensus 443 v~~Lv~ll~~~-~~~v~~~A~~aL~~L~ 469 (534)
++.|+++..+. +..+...|...|..+.
T Consensus 336 ~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 336 LEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 99999999865 8888899988888764
No 78
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00066 Score=71.29 Aligned_cols=300 Identities=14% Similarity=0.169 Sum_probs=173.8
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (534)
.+..-++++..|.+.-+..|.+|+-.+..+.-.=|+. +. ...|.|++-|.++|+.|+-.|+.+++.|+..++ +-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 4556788999999999999999999998887544433 32 357899999999999999999999999998654 21
Q ss_pred H--------HHHhc-------------------------CCHHHHHHHHccCC-HHHHHHHHHHHHH--hhcC-hhhHHH
Q 009471 231 N--------WLVSE-------------------------GVLPPLIRLVESGS-TVGKEKATISLQR--LSMS-AEMARA 273 (534)
Q Consensus 231 ~--------~l~~~-------------------------g~i~~Lv~lL~~~~-~~~~~~A~~~L~~--Ls~~-~~~~~~ 273 (534)
- .++.. ..+++|..++++.. +.+...+..++-. ++.. +++-..
T Consensus 217 L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~as 296 (877)
T KOG1059|consen 217 LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSAS 296 (877)
T ss_pred ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHH
Confidence 1 11111 23444444444431 1122222222211 1111 111100
Q ss_pred HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~ 352 (534)
+ .-++..|-.++.+.|+..+..++-+++.+...+ ..-... -+.++..|.+.+. .++..|+..|.-+.. .
T Consensus 297 i--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~-SIRlrALdLl~gmVs--k 366 (877)
T KOG1059|consen 297 I--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDE-SIRLRALDLLYGMVS--K 366 (877)
T ss_pred H--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCc-hhHHHHHHHHHHHhh--h
Confidence 0 012456666777889999999999999888733 222211 3456777877777 899999999999985 3
Q ss_pred HHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHHHHHhcCc-HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 353 NLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVLISLGF-FPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 353 ~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~~l~~~~~-i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
.+-..| +..|+..+.. ...+...+.-+..+|+..+-+.+.+-.+ +..|+++.+-.....=...+.-+..++
T Consensus 367 kNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 367 KNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred hhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence 333333 3455555432 3467777777777777545555544333 555666654322211122222333444
Q ss_pred -CChhHHHHHHhcCchHHHHHhhc-----------CCChHHHHHHHHHHHHhcCCCcchH
Q 009471 429 -TSAEMKKLVGEAGCTPLLIKLLE-----------AKPNSVREVAAQAISSLVTLPQNCR 476 (534)
Q Consensus 429 -~~~~~~~~i~~~g~v~~Lv~ll~-----------~~~~~v~~~A~~aL~~L~~~~~~~~ 476 (534)
+-+..|... |..+..++. +.-.++-.+|+|++.-.+...+|..
T Consensus 442 iRV~~iR~fs-----V~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~ 496 (877)
T KOG1059|consen 442 IRVPSIRPFS-----VSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPN 496 (877)
T ss_pred eechhhhHhH-----HHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHH
Confidence 223333332 222222222 1235677788888887765555433
No 79
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.0013 Score=67.50 Aligned_cols=295 Identities=15% Similarity=0.184 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCC
Q 009471 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS 250 (534)
Q Consensus 171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~ 250 (534)
...-.+...+++..+++.+.. ..|.|-..|++.-.-+...+++.++.++...-.-+.+ ...+..|-.+|++..
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~q-----~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~--~~~vs~L~~fL~s~r 316 (898)
T COG5240 244 GVLLVRATVELLKENSQALLQ-----LRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV--DQTVSSLRTFLKSTR 316 (898)
T ss_pred heehHHHHHHHHHhChHHHHH-----HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcch
Confidence 333444555566555544332 2556666777666788899999999988765211111 124777777888888
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHH--------H-hC-C--ChHHHHHHHccCChHHHH-------------------HHH
Q 009471 251 TVGKEKATISLQRLSMSAEMARAI--------V-GH-G--GVRPLIEICQTGDSVSQA-------------------AAA 299 (534)
Q Consensus 251 ~~~~~~A~~~L~~Ls~~~~~~~~l--------~-~~-g--~i~~Lv~ll~~~~~~~~~-------------------~a~ 299 (534)
...+-.|.++|..|+...+.+-.. + +. . ..-++..+|+.++.+... .+.
T Consensus 317 v~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i 396 (898)
T COG5240 317 VVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI 396 (898)
T ss_pred HHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH
Confidence 889999999999998764432211 1 10 0 112233444444433221 122
Q ss_pred HHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHH
Q 009471 300 CTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQE 378 (534)
Q Consensus 300 ~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~ 378 (534)
.+++.|+. .|.-+. ..+..|...|.+.-..+-+..++.+|..+....+..++.+ ++.|..++++.+.-+
T Consensus 397 da~rsLsl~Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDcey~~ 466 (898)
T COG5240 397 DALRSLSLLFPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCEYHQ 466 (898)
T ss_pred HHHHHHHhhCcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcchhH
Confidence 22222222 111111 1233333333222222456666666666655554444333 455566666555555
Q ss_pred HHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh---hHHHHHHhcCchHHHHHhhcCC
Q 009471 379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA---EMKKLVGEAGCTPLLIKLLEAK 453 (534)
Q Consensus 379 ~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~---~~~~~i~~~g~v~~Lv~ll~~~ 453 (534)
.+++.|+-|.. +... ....++..+.+-+--.+.-++..|..+|.+++.+. -..+. ....|-+.+++.
T Consensus 467 I~vrIL~iLG~EgP~a~---~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s-----v~~~lkRclnD~ 538 (898)
T COG5240 467 ITVRILGILGREGPRAK---TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS-----VENALKRCLNDQ 538 (898)
T ss_pred HHHHHHHHhcccCCCCC---CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH-----HHHHHHHHhhcc
Confidence 55555555554 1111 01223555555444566789999999999998652 12222 245677788899
Q ss_pred ChHHHHHHHHHHHHhcCCCcchHHHHhh--CCCHHHHHhh
Q 009471 454 PNSVREVAAQAISSLVTLPQNCREVKRD--DKSVPNLVQL 491 (534)
Q Consensus 454 ~~~v~~~A~~aL~~L~~~~~~~~~~~~~--~~~v~~Lv~l 491 (534)
+.++|..|..+|.++ .....+..++.. -+.++.|..-
T Consensus 539 DdeVRdrAsf~l~~~-~~~da~~pl~~sd~~~dipsle~~ 577 (898)
T COG5240 539 DDEVRDRASFLLRNM-RLSDACEPLFSSDELGDIPSLELE 577 (898)
T ss_pred cHHHHHHHHHHHHhh-hhhhhhhccccccccCCcchhHHh
Confidence 999999999999998 444444443332 2344554433
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=97.99 E-value=0.00058 Score=72.85 Aligned_cols=229 Identities=16% Similarity=0.106 Sum_probs=156.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc----hhHHHHhcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhh
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS----CENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRLS 265 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls 265 (534)
.++..+++|+..+++-|-.++..+.++....+ .++.+.+.=+.+.+-++|+++ ....+.-|..+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46777888998887777788888888887655 345677887889999999883 3456778889999999
Q ss_pred cChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHH
Q 009471 266 MSAEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL 344 (534)
Q Consensus 266 ~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L 344 (534)
..++.+..----+-||.|++++...+. .+...++.+|..++..++.++.+.+.|+++.|++.+.++. ...+.++.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~--~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS--FQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc--chHHHHHHHH
Confidence 877665322123557999999988777 8999999999999999999999999999999999998854 5799999999
Q ss_pred HHHccCChHHHHHHHhcCC----hHHHHHhhcC--CchHHHHHHHHHHhhcCcc---HHHHHhcCc----HHHHHHHHhc
Q 009471 345 QNLTASNENLRRSVVSEGG----IRSLLAYLDG--PLPQESAVGALRNLVGSVS---QEVLISLGF----FPRLVHVLKA 411 (534)
Q Consensus 345 ~~La~~~~~~~~~i~~~g~----l~~L~~~L~~--~~~~~~a~~aL~~La~~~~---~~~l~~~~~----i~~Lv~lL~~ 411 (534)
.+++......... -+... ++.+-..+.. ...+...+..|..+-.... ........+ ...+..++++
T Consensus 164 ~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988743311000 11112 2233333322 3456677888888776221 111222333 3445556666
Q ss_pred CC-HHHHHHHHHHHHHhc
Q 009471 412 GS-LGAQQAAASALCRVC 428 (534)
Q Consensus 412 ~~-~~v~~~A~~aL~~la 428 (534)
+- +.-+..+......|.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 54 444555554444443
No 81
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00025 Score=75.25 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=116.0
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
+-..+++++..+++.|.+.|.-.--.+.+.+...|.. ..+.+..+++=..++++.+|..|++.++.+.... ..+
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-i~e 120 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-ITE 120 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-HHH
Confidence 4456888999999999998888888888888776643 2256888888788889999999999888775443 222
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (534)
-.+.++.+.+++.++.++..++.+..++-. .+.......|.++.|-.++.+.+|.+...|..+|..+...+
T Consensus 121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred -----HHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 248899999999999999999988888743 34555667888999999999999999999999999887643
No 82
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00071 Score=71.07 Aligned_cols=220 Identities=15% Similarity=0.153 Sum_probs=156.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHH
Q 009471 239 LPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLA 316 (534)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~ 316 (534)
-+-++.+|.+..+.++..|..+++.+... ++..+. .+|.|++=|.++||.++.+|+.+++.|+. +|.+.-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-- 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-- 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--
Confidence 56677899999999999999999998765 333222 23999999999999999999999999998 5554333
Q ss_pred hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC---chHHHHHHHHH--Hhhc-C
Q 009471 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP---LPQESAVGALR--NLVG-S 390 (534)
Q Consensus 317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~---~~~~~a~~aL~--~La~-~ 390 (534)
.-|.+++++...+..=+....+...++|+--.+.... ..+++|.+++.+. .+...|+.++. ++.. .
T Consensus 219 ---LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 219 ---LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred ---ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 3578888886444324677778888888876666554 3478899988763 23333333332 2222 1
Q ss_pred ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
......+. -.+..|-.++.+.|+.++..++-+++.+.. ++....+. -..+++.+.++++.+|-.|+..|..+.
T Consensus 291 ~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 291 SDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred CCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 11111111 146778888899999999999999999984 35443332 456788999999999999999999984
Q ss_pred CCCcchHHHHh
Q 009471 470 TLPQNCREVKR 480 (534)
Q Consensus 470 ~~~~~~~~~~~ 480 (534)
...|..++++
T Consensus 365 -skkNl~eIVk 374 (877)
T KOG1059|consen 365 -SKKNLMEIVK 374 (877)
T ss_pred -hhhhHHHHHH
Confidence 5566666554
No 83
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.0025 Score=65.47 Aligned_cols=304 Identities=14% Similarity=0.130 Sum_probs=189.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCCh
Q 009471 203 QLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGV 280 (534)
Q Consensus 203 ~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i 280 (534)
+-+++++..-|+.|+.+++.+-..+. ++..++ ...+|.+...+.++.-.++..++|++..++.+- ...+...|-+
T Consensus 373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl 449 (858)
T COG5215 373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHL 449 (858)
T ss_pred HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccccc
Confidence 34667788999999999999977653 444443 356888888888888889999999999987542 2223334444
Q ss_pred HHHHHHHc---cCChHHHHHHHHHHHHccCCc-hH----HHHHHh--hCcHHHHHHHhh-cCCChhHHHHHHHHHHHHcc
Q 009471 281 RPLIEICQ---TGDSVSQAAAACTLKNISAVP-EV----RQMLAE--EGIVSVMIKLLD-CGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 281 ~~Lv~ll~---~~~~~~~~~a~~aL~nLa~~~-~~----~~~i~e--~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~ 349 (534)
+..+.-+- ...|.....++|...|+...- +. -..+.. ..++..|++-.+ .+++...|..+..+|+.+..
T Consensus 450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 44443322 235777788899988887631 11 111111 223344443332 12222566666666666654
Q ss_pred CC-hHHHHHHHh---------cCChHHHHHhhc--C----CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhc
Q 009471 350 SN-ENLRRSVVS---------EGGIRSLLAYLD--G----PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA 411 (534)
Q Consensus 350 ~~-~~~~~~i~~---------~g~l~~L~~~L~--~----~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~ 411 (534)
.. +.....+.. ...+..+-+.+. + .+++.+-+++|..+.+ +...+. ++...+..++++|++
T Consensus 530 ~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les 608 (858)
T COG5215 530 ICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILES 608 (858)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhc
Confidence 22 222221111 112222222221 1 3466777777777776 211111 233467788888887
Q ss_pred CC-HHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHH
Q 009471 412 GS-LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPN 487 (534)
Q Consensus 412 ~~-~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~ 487 (534)
.+ ..+-.....++.+|+.+ +.+-++. ..++|.|.+-++..+..+...|...+..|+.. ......+.. ..+..
T Consensus 609 ~~~t~~~~dV~~aIsal~~sl~e~Fe~y~--~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d--~~ms~ 684 (858)
T COG5215 609 TKPTTAFGDVYTAISALSTSLEERFEQYA--SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYAD--VLMSS 684 (858)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHH
Confidence 75 45667788889999876 3344444 67899999999888888889999999999743 334344333 56789
Q ss_pred HHhhcCCC-CchhHHHHHHHHHHhhchh
Q 009471 488 LVQLLDPS-PQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 488 Lv~lL~~~-~~~~~k~~a~~~L~~L~~~ 514 (534)
|+|+|+++ ...++|...++++..++..
T Consensus 685 LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 685 LVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred HHHHhcChhhccccchHHHHHHHHHHHH
Confidence 99999987 2345788888888887765
No 84
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.96 E-value=0.003 Score=63.78 Aligned_cols=245 Identities=26% Similarity=0.276 Sum_probs=168.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
.+..++..+.+.+...+..|...+..+- ....++.+..++.+.++.+|..|+.+|+.+....
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------- 105 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGDPE------- 105 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh-------
Confidence 4677888888888888988887755432 2246899999999999999999999887775333
Q ss_pred hcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCCh------------HHHHHHHHH
Q 009471 235 SEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS------------VSQAAAACT 301 (534)
Q Consensus 235 ~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~------------~~~~~a~~a 301 (534)
.++.++.++. +++..++..++++|..+... .++..++..+.+... .++..+...
T Consensus 106 ---a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 106 ---AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred ---HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 4899999999 58999999999999997542 225677777776542 244444444
Q ss_pred HHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHH
Q 009471 302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES 379 (534)
Q Consensus 302 L~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~ 379 (534)
|..+ .+...++.+.+.+.+... .++..+..+|..+...+ ....+.+...+.+ ..++..
T Consensus 173 l~~~----------~~~~~~~~l~~~l~~~~~-~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~ 232 (335)
T COG1413 173 LGEL----------GDPEAIPLLIELLEDEDA-DVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKA 232 (335)
T ss_pred HHHc----------CChhhhHHHHHHHhCchH-HHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHH
Confidence 4433 235567888888888876 78999999999988754 2234556666665 346667
Q ss_pred HHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHH
Q 009471 380 AVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459 (534)
Q Consensus 380 a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~ 459 (534)
++.+++.+-. ...+..+...+...+..+...+...+...-. ......+...+.+....++.
T Consensus 233 ~~~~l~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~ 293 (335)
T COG1413 233 ALLALGEIGD---------EEAVDALAKALEDEDVILALLAAAALGALDL----------AEAALPLLLLLIDEANAVRL 293 (335)
T ss_pred HHHHhcccCc---------chhHHHHHHHHhccchHHHHHHHHHhcccCc----------hhhHHHHHHHhhcchhhHHH
Confidence 7776666543 2246777777877777666666655541110 12344555566666677777
Q ss_pred HHHHHHHHhc
Q 009471 460 VAAQAISSLV 469 (534)
Q Consensus 460 ~A~~aL~~L~ 469 (534)
.+..++....
T Consensus 294 ~~~~~l~~~~ 303 (335)
T COG1413 294 EAALALGQIG 303 (335)
T ss_pred HHHHHHHhhc
Confidence 7777776664
No 85
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0026 Score=69.36 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=106.0
Q ss_pred HHHHHHHHHccC-CchHHHHHHh----hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh
Q 009471 296 AAAACTLKNISA-VPEVRQMLAE----EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY 370 (534)
Q Consensus 296 ~~a~~aL~nLa~-~~~~~~~i~e----~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~ 370 (534)
..++.+|.|+.. +|+....+.. -|.++.++.++.......++..|+..+..++. +..+-..+...+++..|+++
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHH
Confidence 467888888765 5554443332 56788888888755544799999999988887 56666778888899999999
Q ss_pred hcC-CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC
Q 009471 371 LDG-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 371 L~~-~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~ 430 (534)
|.+ |..|+.++.+|..|++ +.......+.|++..+..++ .+.++..+..|+..+.+|...
T Consensus 1822 LHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1822 LHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 988 9999999999999998 56666777888888888766 566789999999999999754
No 86
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.93 E-value=0.00077 Score=70.94 Aligned_cols=258 Identities=16% Similarity=0.127 Sum_probs=166.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch---hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh-HHH
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAESGSC---ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARA 273 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~ 273 (534)
+...+..|++..+.+|++|+..++.++.--.. .+.+...|+ .|...|....+++......++..+...-.. +..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 55566678888999999999999999754332 223333443 366778888888887777777766432211 110
Q ss_pred HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-h---HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~---~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
---.+.+|.|..+|++....++..+...+..++... + .|+-| .+---|+++|..... +++.++...++.|+.
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK-~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKK-EIRRAAVNTFGYIAK 954 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH
Confidence 001455799999999999999999999999998743 3 22222 233446777776665 899999999999885
Q ss_pred CChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 350 SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 350 ~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
. +--..++.. +|++-.+++.-.++-..++-.-..+.-.-..++|.|++=-+.++..||.-.+++++.|-.
T Consensus 955 a-------IGPqdVLat---LlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fe 1024 (1172)
T KOG0213|consen 955 A-------IGPQDVLAT---LLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFE 1024 (1172)
T ss_pred h-------cCHHHHHHH---HHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHH
Confidence 1 211122333 344433332221111111110000000012357777777778888999999999999875
Q ss_pred C--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc
Q 009471 430 S--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ 473 (534)
Q Consensus 430 ~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~ 473 (534)
. +-.++++ .-..|.|.+-+.+.+..-|.-|+.++.+|+....
T Consensus 1025 yigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1025 YIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 4 4445555 3457888888888888889999999999997644
No 87
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0065 Score=60.71 Aligned_cols=254 Identities=19% Similarity=0.165 Sum_probs=178.9
Q ss_pred HHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh------hhH----HHHHhCCChHHHH
Q 009471 215 KTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA------EMA----RAIVGHGGVRPLI 284 (534)
Q Consensus 215 ~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~------~~~----~~l~~~g~i~~Lv 284 (534)
..+.-+-.++..++--..+++.++++.|+.+|...+.++.......|..|+..+ +.+ .++++.+.++.|+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 344556677888887778999999999999999999999999999999998532 333 3456677788887
Q ss_pred HHHccCCh------HHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhh-cCCChhHHHHHHHHHHHHccCChHHHH
Q 009471 285 EICQTGDS------VSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRR 356 (534)
Q Consensus 285 ~ll~~~~~------~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~~~~~~~~ 356 (534)
.-+..-|. .........+-|+.. .++.+..+++.|.+..|+.-+. .......+..|.++|.-+-..+..++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 76653222 334567778888887 4588999999999999888553 323325688899999999887777887
Q ss_pred HHHhcCChHHHHHhhc-----CC---chHHH---HHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009471 357 SVVSEGGIRSLLAYLD-----GP---LPQES---AVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424 (534)
Q Consensus 357 ~i~~~g~l~~L~~~L~-----~~---~~~~~---a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL 424 (534)
..-.-.|+..+++-+. +| +-++. ...+|+.+.. +.++..+....++....-+++. ....+..+.++|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 7788899999988762 33 23444 4444444444 6788888877777655555555 445677788888
Q ss_pred HHhcCC---hhHHHHHHhcCchHHHHHhhc-CC---------ChHHHHHHHHHHHHhc
Q 009471 425 CRVCTS---AEMKKLVGEAGCTPLLIKLLE-AK---------PNSVREVAAQAISSLV 469 (534)
Q Consensus 425 ~~la~~---~~~~~~i~~~g~v~~Lv~ll~-~~---------~~~v~~~A~~aL~~L~ 469 (534)
-....+ ..++..+++.+|...+..+.- .+ ..+.-+..+..|+++.
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 887655 357777778777776666543 11 1334456666666665
No 88
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.89 E-value=2e-05 Score=52.63 Aligned_cols=41 Identities=39% Similarity=0.570 Sum_probs=38.2
Q ss_pred ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
+++++..+.+.|+++.|+.++.++++.++..|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999974
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.01 Score=62.46 Aligned_cols=338 Identities=14% Similarity=0.098 Sum_probs=192.7
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCch
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSC 229 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~ 229 (534)
+...+..+..-|.+.|+...--|+..+.++-.. +.+..+. ..|+ ++|-+++ +-++..|+-+|..|-...+
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp- 180 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP- 180 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc-
Confidence 344445555556666666666666666665321 1222221 2233 5666654 6788888888888866543
Q ss_pred hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc-------------CChHHHH
Q 009471 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-------------GDSVSQA 296 (534)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~-------------~~~~~~~ 296 (534)
+.+-..+-...++.+|++.+..+...+...+..|+...+.....+-.-.+..|..++.. +.|=.+.
T Consensus 181 -Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 181 -DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred -cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 12222345788999999988888878888888887653322211112223444444332 2455677
Q ss_pred HHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCC-hhH-----HHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471 297 AAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGIL-LGS-----KEYAAECLQNLTASNENLRRSVVSEGGIRSLL 368 (534)
Q Consensus 297 ~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~-~~v-----~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~ 368 (534)
..++.|.+.-..+ ..+..+.+ ++..++...++... ..+ +...+.-.-+++.+-+.-.+.+. ..+..|-
T Consensus 260 Kl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg 335 (938)
T KOG1077|consen 260 KLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLG 335 (938)
T ss_pred HHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH
Confidence 7888887774422 34444432 34444444432211 112 22223333334433222222222 2366777
Q ss_pred HhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchH
Q 009471 369 AYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTP 444 (534)
Q Consensus 369 ~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~ 444 (534)
+++.+ +.+|--++..+..|+. ....+.+-.+ .+.++..|+ ..|..+++.|+..|..||..+ +.+.+ +.
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~I-----V~ 407 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQI-----VA 407 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHHH-----HH
Confidence 88876 6789999999999998 3344444333 788899998 778999999999999998643 34444 56
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcC-CCcch----HHH---------HhhCCCHHHHHhhcCCCCchhHHHHHHHHHHh
Q 009471 445 LLIKLLEAKPNSVREVAAQAISSLVT-LPQNC----REV---------KRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS 510 (534)
Q Consensus 445 ~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~----~~~---------~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~ 510 (534)
.|.+.+...+..+|+...-=..-|+. ...+- ..+ ..+++.+-.++|..-.+ ++++.||+..+..
T Consensus 408 elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn--edlq~yaak~~fe 485 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN--EDLQGYAAKRLFE 485 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc--hhhhHHHHHHHHH
Confidence 67778877777777665444444431 11111 100 11334555666666654 3678888766655
Q ss_pred hc
Q 009471 511 LS 512 (534)
Q Consensus 511 L~ 512 (534)
.-
T Consensus 486 ~L 487 (938)
T KOG1077|consen 486 YL 487 (938)
T ss_pred HH
Confidence 43
No 90
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.88 E-value=3e-05 Score=51.74 Aligned_cols=41 Identities=29% Similarity=0.452 Sum_probs=37.9
Q ss_pred ChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471 185 DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE 225 (534)
Q Consensus 185 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (534)
+++++..+++.|+++.|+++|+++++++++.|+++|++|+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999973
No 91
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.0012 Score=68.66 Aligned_cols=281 Identities=15% Similarity=0.087 Sum_probs=170.5
Q ss_pred hhhhhhchHHHHHHHHhcCCHHHHHH-HHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC---CCHHHHHHHHHHHHHh
Q 009471 148 AEATTHGNTRELLARLQIGHLEAKHK-ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA---TSPRIREKTVTVICSL 223 (534)
Q Consensus 148 ~~~~~~~~i~~Ll~~L~~~~~~~~~~-A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~---~~~~v~~~A~~~L~~L 223 (534)
........+..+...++......+.+ ++.+.......-. ...+...++.+-.++.+ ....+|+.|..+...+
T Consensus 168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAI 243 (569)
T ss_pred hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHH
Confidence 34444555666666665544444333 2222222221110 12344555555555543 4588998888777766
Q ss_pred hcCC--chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471 224 AESG--SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (534)
Q Consensus 224 a~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (534)
-..- ...+. .+++++.-+.+.....+..++..+..|....+..-...-...+|.+.+.+-+..++++..+..+
T Consensus 244 ~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~ 318 (569)
T KOG1242|consen 244 MRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIET 318 (569)
T ss_pred HHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHH
Confidence 4422 12222 2566665555557778889999999998877777777778999999999999999999999999
Q ss_pred HHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh----c--CCc
Q 009471 302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----D--GPL 375 (534)
Q Consensus 302 L~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L----~--~~~ 375 (534)
|.+++...++.. | ...+|.+++.+.++.. -...++..|..-+.- ..++.-.+..++.++ . +..
T Consensus 319 l~~~~svidN~d-I--~~~ip~Lld~l~dp~~--~~~e~~~~L~~ttFV------~~V~~psLalmvpiL~R~l~eRst~ 387 (569)
T KOG1242|consen 319 LLKFGSVIDNPD-I--QKIIPTLLDALADPSC--YTPECLDSLGATTFV------AEVDAPSLALMVPILKRGLAERSTS 387 (569)
T ss_pred HHHHHHhhccHH-H--HHHHHHHHHHhcCccc--chHHHHHhhcceeee------eeecchhHHHHHHHHHHHHhhccch
Confidence 999987554444 1 2357778888776663 233344444433321 011122233333333 2 256
Q ss_pred hHHHHHHHHHHhhc-CccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc
Q 009471 376 PQESAVGALRNLVG-SVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE 451 (534)
Q Consensus 376 ~~~~a~~aL~~La~-~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~ 451 (534)
.+..++.+++|+|. -+.+..+.. ...+|.|-..+....|++|..++++|+.+-........ .+.+|.+...+.
T Consensus 388 ~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 388 IKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLT 463 (569)
T ss_pred hhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhc
Confidence 78899999999998 334433322 23455566666666899999999999887643221111 455666666664
No 92
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0027 Score=66.28 Aligned_cols=281 Identities=16% Similarity=0.153 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhhcCCc----hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH
Q 009471 212 IREKTVTVICSLAESGS----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC 287 (534)
Q Consensus 212 v~~~A~~~L~~La~~~~----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll 287 (534)
.+..+......++..+. .++. +...+..+..+.+..++..|+..|..|+....--... ....++++
T Consensus 174 ~~~~~~~~~~~lg~~~ss~~~d~~~-----~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~-----Y~~A~~~l 243 (823)
T KOG2259|consen 174 NRLLLYCFHLPLGVSPSSLTHDREH-----AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC-----YSRAVKHL 243 (823)
T ss_pred chHHHHHHhhhcccCCCcccccHHH-----HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH-----HHHHHHHh
Confidence 34444445555554442 2222 2344888888889999999999998887743333333 26678899
Q ss_pred ccCChHHHHHHHHHHHHccC---Cc----hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh
Q 009471 288 QTGDSVSQAAAACTLKNISA---VP----EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360 (534)
Q Consensus 288 ~~~~~~~~~~a~~aL~nLa~---~~----~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~ 360 (534)
++.+..+|..|...++-.+. .+ .....+. ..++..+...+.+... .++..|..+|+.+...+++.-..-.+
T Consensus 244 sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl-~VRV~AaK~lG~~~~vSee~i~QTLd 321 (823)
T KOG2259|consen 244 SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSL-SVRVEAAKALGEFEQVSEEIIQQTLD 321 (823)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCce-eeeehHHHHhchHHHhHHHHHHHHHH
Confidence 99999999988777665543 12 1222222 3457778888888886 78888888888887755443222111
Q ss_pred ----------------------cC----------------------------ChHHHHHhhcC--CchHHHHHHHHHHhh
Q 009471 361 ----------------------EG----------------------------GIRSLLAYLDG--PLPQESAVGALRNLV 388 (534)
Q Consensus 361 ----------------------~g----------------------------~l~~L~~~L~~--~~~~~~a~~aL~~La 388 (534)
.| .--.++.-+++ .++|..|+..++.|+
T Consensus 322 KKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La 401 (823)
T KOG2259|consen 322 KKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLA 401 (823)
T ss_pred HHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHH
Confidence 11 12233444444 467889999999998
Q ss_pred c--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471 389 G--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (534)
Q Consensus 389 ~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~ 466 (534)
. +... ...++.|+.++++....|+..|..+|..++.+-..+ +..++.+.+.+.+.++++|+...+.|.
T Consensus 402 ~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~-----eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 402 TSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR-----EEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred cCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec-----HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7 3222 224778888888888899999999999988652222 334777888888889999988888777
Q ss_pred HhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHH
Q 009471 467 SLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLER 521 (534)
Q Consensus 467 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~ 521 (534)
+. ..+ ..+-+ . ..+..|+..|..-| ..+.-...|+..+..+...++..
T Consensus 472 ~~-~~~-d~~~i-~--m~v~~lL~~L~kyP--qDrd~i~~cm~~iGqnH~~lv~s 519 (823)
T KOG2259|consen 472 NA-RVS-DLECI-D--MCVAHLLKNLGKYP--QDRDEILRCMGRIGQNHRRLVLS 519 (823)
T ss_pred hc-CCC-cHHHH-H--HHHHHHHHHhhhCC--CCcHHHHHHHHHHhccChhhHHH
Confidence 65 222 11111 1 24566666666554 24556677777777774444433
No 93
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.81 E-value=0.00091 Score=63.86 Aligned_cols=226 Identities=15% Similarity=0.136 Sum_probs=154.5
Q ss_pred HHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-CCChHHHHHHHcc--CChHHHHHHHHHHHHccCCchHHHHHHh-hCc
Q 009471 245 LVESGSTVGKEKATISLQRLSMSAEMARAIVG-HGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAE-EGI 320 (534)
Q Consensus 245 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~ 320 (534)
+++.-++-.+..|..++.++...++.+..+.. ...-..+++++++ ++...|.+.+-++|.++.+++..+.+-. ...
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33333455788899999999998888776554 4566778888875 4677899999999999998877755443 456
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhhcC-----Cch-------H--------HH
Q 009471 321 VSVMIKLLDCGILLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG-----PLP-------Q--------ES 379 (534)
Q Consensus 321 i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L~~-----~~~-------~--------~~ 379 (534)
+.-++++++......+-..++.++.|++... ........-.|-+.+-++.|.. .+. + +-
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 7778888876655577888999999999732 2222233334445555555522 111 1 00
Q ss_pred HHH--HHHHh-----hc-C---------ccHHHHHh--cCcHHHHHHHHhcCCHH-HHHHHHHHHHHhcCC-hhHHHHHH
Q 009471 380 AVG--ALRNL-----VG-S---------VSQEVLIS--LGFFPRLVHVLKAGSLG-AQQAAASALCRVCTS-AEMKKLVG 438 (534)
Q Consensus 380 a~~--aL~~L-----a~-~---------~~~~~l~~--~~~i~~Lv~lL~~~~~~-v~~~A~~aL~~la~~-~~~~~~i~ 438 (534)
+.. -+..| +- + .+...+.+ ..++..|.++++++++. .-..|+.-+..+.+. |+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 000 00111 10 1 22334443 34588899999888765 455677777777754 99999999
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 439 ~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
..|+-..+++++++++++++..|..++..+.+
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999987653
No 94
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0069 Score=60.51 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC------c----hhHHHHhcCCHHHH
Q 009471 173 KALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG------S----CENWLVSEGVLPPL 242 (534)
Q Consensus 173 ~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~------~----~~~~l~~~g~i~~L 242 (534)
..+..+.-++. -|+-...+++..+|+.|+.+|.+.+.++....+..|..|+..+ + --+.+++.++++.|
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 34445555554 4555567888999999999999999999999999999998753 1 34577788999999
Q ss_pred HHHHccCCHHHHH------HHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccC--ChHHHHHHHHHHHHccCCc-hHH
Q 009471 243 IRLVESGSTVGKE------KATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTG--DSVSQAAAACTLKNISAVP-EVR 312 (534)
Q Consensus 243 v~lL~~~~~~~~~------~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL~nLa~~~-~~~ 312 (534)
++-++.-+..+++ .+...+.|+..- ++.+..++++|.+..|+.-+... -..-+..|..+|.-+-.++ +++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 9988765444444 455667777554 66677888898889888754432 3345677888887777655 577
Q ss_pred HHHHhhCcHHHHHHHhh----cC----CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHH
Q 009471 313 QMLAEEGIVSVMIKLLD----CG----ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGA 383 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~----~~----~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~a 383 (534)
.....-.++..+++-+. .+ +..+.-++-..||+.+.. .+.+|..+.+..|++...-+++. ...+..++++
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLREKKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHH
Confidence 77777788888877663 22 112445666777776665 56778888888888776666655 4567889999
Q ss_pred HHHhhc-C---ccHHHHHhcCcHHHHHHHHh-cCC---------HHHHHHHHHHHHHhcC
Q 009471 384 LRNLVG-S---VSQEVLISLGFFPRLVHVLK-AGS---------LGAQQAAASALCRVCT 429 (534)
Q Consensus 384 L~~La~-~---~~~~~l~~~~~i~~Lv~lL~-~~~---------~~v~~~A~~aL~~la~ 429 (534)
|..... + +++..+++..++..++.+.- .+. .+.-+..+..|+.+-.
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 999887 2 56678888777777776542 221 2455566666666543
No 95
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.00079 Score=73.38 Aligned_cols=218 Identities=15% Similarity=0.204 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh-hcChhhHHHHHhCCChHHHHHHHccC
Q 009471 213 REKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTG 290 (534)
Q Consensus 213 ~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L-s~~~~~~~~l~~~g~i~~Lv~ll~~~ 290 (534)
|..|+..|+.+-.-.+ ....-..-|+.|.++++|++.-.+++-.-+-+-..+ +.++.+...+++.+|-..++..+..+
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 3444455555444443 455566779999999999999888776555555554 55555566799999988888888762
Q ss_pred ---ChHHHHHHHHHHHHccCC-chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHH
Q 009471 291 ---DSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366 (534)
Q Consensus 291 ---~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (534)
+++-|..++-+|..+..+ +-.++...+.+.+...++.+.++...-.+..++-||+.|-.+++..|..=.+.+..+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 457888999999999875 3667777888899988899988633257888999999999999999888888999999
Q ss_pred HHHhhcC--CchHHHHHHHHHHhhcCc------cHHH-----------HHhcCcHH----HHHHHHhcCCHHHHHHHHHH
Q 009471 367 LLAYLDG--PLPQESAVGALRNLVGSV------SQEV-----------LISLGFFP----RLVHVLKAGSLGAQQAAASA 423 (534)
Q Consensus 367 L~~~L~~--~~~~~~a~~aL~~La~~~------~~~~-----------l~~~~~i~----~Lv~lL~~~~~~v~~~A~~a 423 (534)
|+..|.+ |++|..|+.+|+.+.... .... ......+. .++.+++.+++-++.+.+.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 9999976 899999999999998721 1111 11112222 56777788999999999999
Q ss_pred HHHhcCC
Q 009471 424 LCRVCTS 430 (534)
Q Consensus 424 L~~la~~ 430 (534)
|.++...
T Consensus 727 ls~~~~g 733 (1387)
T KOG1517|consen 727 LSHFVVG 733 (1387)
T ss_pred HHHHHHh
Confidence 9988743
No 96
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.77 E-value=0.016 Score=62.99 Aligned_cols=217 Identities=16% Similarity=0.182 Sum_probs=116.1
Q ss_pred HHHHccCChHHHHHHHHHHHHccCCc--h----HHHHHHhh------------------------CcHHHHHHHh----h
Q 009471 284 IEICQTGDSVSQAAAACTLKNISAVP--E----VRQMLAEE------------------------GIVSVMIKLL----D 329 (534)
Q Consensus 284 v~ll~~~~~~~~~~a~~aL~nLa~~~--~----~~~~i~e~------------------------g~i~~L~~ll----~ 329 (534)
++.+.+++.+++.+|..+|++++.+. . ....+... ..++.+-.+| +
T Consensus 863 ieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE 942 (1233)
T KOG1824|consen 863 IEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCE 942 (1233)
T ss_pred HHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcc
Confidence 44455667889999999999999854 1 11111110 0111111111 1
Q ss_pred cCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHH
Q 009471 330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLV 406 (534)
Q Consensus 330 ~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv 406 (534)
...+ ..|.-.++||+.++..+++. .+|.|-..+.+ +..+..++.++..... ...+-.......+..++
T Consensus 943 ~~ee-gtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl 1013 (1233)
T KOG1824|consen 943 CAEE-GTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFL 1013 (1233)
T ss_pred cchh-hhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHH
Confidence 1111 34444555555555433321 25555555554 4456666666555444 21122223345678888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHH--------Hhc-CchHHHHHhhc--------CCChHHHHHHHHHHHHh
Q 009471 407 HVLKAGSLGAQQAAASALCRVCTS-AEMKKLV--------GEA-GCTPLLIKLLE--------AKPNSVREVAAQAISSL 468 (534)
Q Consensus 407 ~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i--------~~~-g~v~~Lv~ll~--------~~~~~v~~~A~~aL~~L 468 (534)
.++++++..|++.|..++...+.+ +...+-+ .+. ..=+.|++-.+ +..-++|..|-++++.|
T Consensus 1014 ~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytL 1093 (1233)
T KOG1824|consen 1014 KLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTL 1093 (1233)
T ss_pred HHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999876 3322222 111 11122333222 23367899999999999
Q ss_pred cCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 469 VTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 469 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.....++-.+.+ .+.....-|... -++|......|..|+..
T Consensus 1094 Ldscld~~dit~---Fl~~~~~GL~Dh--ydiKmlt~l~l~rLa~l 1134 (1233)
T KOG1824|consen 1094 LDSCLDRLDITE---FLNHVEDGLEDH--YDIKMLTFLMLARLADL 1134 (1233)
T ss_pred HHhhhhhccHHH---HHHHHHhhcchh--hHHHHHHHHHHHHHHhh
Confidence 744433332222 122233333332 25777777666666654
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.76 E-value=7.1e-05 Score=59.30 Aligned_cols=87 Identities=28% Similarity=0.437 Sum_probs=71.3
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471 402 FPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480 (534)
Q Consensus 402 i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (534)
++.|++.| +++++.++..|+.+|+++.. ...++.|+++++++++.+|..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 57899988 88899999999999995531 245899999999999999999999999882
Q ss_pred hCCCHHHHHhhcCCCCchhHHHHHHHHHH
Q 009471 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLA 509 (534)
Q Consensus 481 ~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~ 509 (534)
+...++.|.+++.++++..++..|..+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34588999999988766667888888773
No 98
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.75 E-value=0.0047 Score=65.27 Aligned_cols=350 Identities=15% Similarity=0.132 Sum_probs=181.7
Q ss_pred hchHHHHHHHHh----cC-CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 009471 153 HGNTRELLARLQ----IG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG 227 (534)
Q Consensus 153 ~~~i~~Ll~~L~----~~-~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~ 227 (534)
...++.++..|+ +. +.+.|..++....+++.-....+...+. +.+..+-+.|.+.+..+|..++.+|+.+++..
T Consensus 506 algip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~-~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLK-PLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred HhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhH-HHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 345666666664 33 5566666666655554211111111111 23444445556667889999999999998755
Q ss_pred c-hhHHHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 009471 228 S-CENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300 (534)
Q Consensus 228 ~-~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~ 300 (534)
. +... ....++..|-. ........-..++..|... .+....+ ....+-.+.+=..++|.+++...+.
T Consensus 585 ~Pygie-----~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yy-Trevmlil~rEf~sPDeemkkivLK 658 (1172)
T KOG0213|consen 585 TPYGIE-----QFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYY-TREVMLILIREFGSPDEEMKKIVLK 658 (1172)
T ss_pred CCcchH-----HHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHh-HHHHHHHHHHhhCCChHHHHHHHHH
Confidence 2 2211 23333343332 2222222333444445433 2222222 1222344555566788899999999
Q ss_pred HHHHccCCchHHHHHHhhCcHHHHHHHhhcCCC-------hhHHHHHHH-------------HHHHHccCChHHHHHHHh
Q 009471 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL-------LGSKEYAAE-------------CLQNLTASNENLRRSVVS 360 (534)
Q Consensus 301 aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~-------~~v~~~a~~-------------~L~~La~~~~~~~~~i~~ 360 (534)
++.+.|.....-........++.++.-...... ..+.+.+.. .+-.+-..++..|....
T Consensus 659 Vv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~- 737 (1172)
T KOG0213|consen 659 VVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVA- 737 (1172)
T ss_pred HHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHH-
Confidence 999988876666666666677777766542110 011111111 11111112222222221
Q ss_pred cCChHHHHHhhcCCc----hHHHHH-HHHHHhhcCccHH------------HH------HhcCcHHHHHHHHhcCCHHHH
Q 009471 361 EGGIRSLLAYLDGPL----PQESAV-GALRNLVGSVSQE------------VL------ISLGFFPRLVHVLKAGSLGAQ 417 (534)
Q Consensus 361 ~g~l~~L~~~L~~~~----~~~~a~-~aL~~La~~~~~~------------~l------~~~~~i~~Lv~lL~~~~~~v~ 417 (534)
+.+..++..+.-.+ .-+.-+ +.+..+....... .+ .-..++..++..|+++++.++
T Consensus 738 -etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vR 816 (1172)
T KOG0213|consen 738 -ETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVR 816 (1172)
T ss_pred -HHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHH
Confidence 22333333321100 111111 1111111100000 00 001235556677889999999
Q ss_pred HHHHHHHHHhcCChhHH---HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCC
Q 009471 418 QAAASALCRVCTSAEMK---KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP 494 (534)
Q Consensus 418 ~~A~~aL~~la~~~~~~---~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~ 494 (534)
+.|+..+..++.--..+ +.+...|. .|...+....+++-...+.||+.+.....-.+.+---.+.++.|...|.+
T Consensus 817 qqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn 894 (1172)
T KOG0213|consen 817 QQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN 894 (1172)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh
Confidence 99999999998543222 23333332 46677778889999998888888874432222222223677888888887
Q ss_pred CCchhHHHHHHHHHHhhchh
Q 009471 495 SPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 495 ~~~~~~k~~a~~~L~~L~~~ 514 (534)
. .+.++.+++..+..++..
T Consensus 895 r-heKVqen~IdLvg~Iadr 913 (1172)
T KOG0213|consen 895 R-HEKVQENCIDLVGTIADR 913 (1172)
T ss_pred h-HHHHHHHHHHHHHHHHhc
Confidence 6 346788888888887766
No 99
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.038 Score=58.42 Aligned_cols=302 Identities=16% Similarity=0.154 Sum_probs=173.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHh
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (534)
--+-+..|++.--..|.-.--.+.-|...+.+..+.+ +..+-.=|.+.|+.-...|+.+++++.+.+ .++.+
T Consensus 76 hmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~re-~~ea~-- 147 (938)
T KOG1077|consen 76 HMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSRE-MAEAF-- 147 (938)
T ss_pred hHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccHh-HHHHh--
Confidence 3344455555444444444444444555554333322 334444456677888899999999998655 22222
Q ss_pred cCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-Cch-
Q 009471 236 EGVLPPLIRLVESG--STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPE- 310 (534)
Q Consensus 236 ~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~- 310 (534)
-+-+-++|-++ ...++..|+-+|..|-.. +|... ..+-...++.+|.+.+..+..++...+.-|+. +++
T Consensus 148 ---~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 148 ---ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred ---hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 23333677665 445788888888887554 33211 01224677888887776666666666666665 222
Q ss_pred HHHHHHhhCcHHHHHHHhh-cCCC-----------hhHHHHHHHHHHHHcc-CChHHHHHHHhcCChHHHHHhhcC-C--
Q 009471 311 VRQMLAEEGIVSVMIKLLD-CGIL-----------LGSKEYAAECLQNLTA-SNENLRRSVVSEGGIRSLLAYLDG-P-- 374 (534)
Q Consensus 311 ~~~~i~e~g~i~~L~~ll~-~~~~-----------~~v~~~a~~~L~~La~-~~~~~~~~i~~~g~l~~L~~~L~~-~-- 374 (534)
.+..+ .-++..|..+.. .+.+ +=.+...++.|.+.-. .++..|....+ +++.++...+. |
T Consensus 222 yk~~~--~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~ 297 (938)
T KOG1077|consen 222 YKTCL--PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKS 297 (938)
T ss_pred HhhhH--HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccc
Confidence 22111 112222322221 1111 1245666777777643 23333333321 23333333332 1
Q ss_pred -chH-----HHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHH
Q 009471 375 -LPQ-----ESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLL 446 (534)
Q Consensus 375 -~~~-----~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~L 446 (534)
.++ -..+.-..+|+. ....+.+. ..+..|-.+|.+..+.++..|...++.|+.+......+..+ ...+
T Consensus 298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~I 373 (938)
T KOG1077|consen 298 KKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTI 373 (938)
T ss_pred cchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHH
Confidence 222 222333344444 22233332 35788999999999999999999999999875555555444 6778
Q ss_pred HHhhc-CCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471 447 IKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKR 480 (534)
Q Consensus 447 v~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (534)
+..++ ..+..+|.+|...|+.+ .+.+|.+.++.
T Consensus 374 i~sLkterDvSirrravDLLY~m-cD~~Nak~IV~ 407 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAM-CDVSNAKQIVA 407 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHH-hchhhHHHHHH
Confidence 88888 78999999999999888 68888888876
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.0012 Score=71.96 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=162.1
Q ss_pred HHHHHHHHHccC----CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh
Q 009471 296 AAAACTLKNISA----VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL 371 (534)
Q Consensus 296 ~~a~~aL~nLa~----~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L 371 (534)
.+=+++|.-|+. ++-.-..-..-|++|.+++||++... +.+.--+.+=..|-.-++.++..+++++|-..+++++
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~-ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR-ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH-hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 344445544443 33333333457999999999999887 7777777777777777899999999999999999988
Q ss_pred cC-----CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC-hhHHHHHHhcCc
Q 009471 372 DG-----PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS-AEMKKLVGEAGC 442 (534)
Q Consensus 372 ~~-----~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~ 442 (534)
++ ++-+..|+.+|..++. ....+...+.+.+...+..|+++ .+-+++..+.+|+.|-.+ ++.+=.=.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 75 3668889999999998 45667778899999999999885 689999999999999876 555555566789
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhcCCC----c----chHHHHh-------hCCCH----HHHHhhcCCCCchhHHHH
Q 009471 443 TPLLIKLLEAKPNSVREVAAQAISSLVTLP----Q----NCREVKR-------DDKSV----PNLVQLLDPSPQNTAKKY 503 (534)
Q Consensus 443 v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~----~----~~~~~~~-------~~~~v----~~Lv~lL~~~~~~~~k~~ 503 (534)
...|..++.++.++||.+|..||..+.... + .+++.+. -++.+ ..++.++... ...++..
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~e 722 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTE 722 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHH
Confidence 999999999999999999999999998642 1 1111111 11222 2556666655 3367777
Q ss_pred HHHHHHhhchhHHH
Q 009471 504 AVACLASLSPSARK 517 (534)
Q Consensus 504 a~~~L~~L~~~~k~ 517 (534)
.+.+|.....+.+.
T Consensus 723 v~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 723 VVVALSHFVVGYVS 736 (1387)
T ss_pred HHHHHHHHHHhhHH
Confidence 77788777776433
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.71 E-value=0.0048 Score=62.24 Aligned_cols=184 Identities=25% Similarity=0.289 Sum_probs=137.4
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH
Q 009471 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA 316 (534)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~ 316 (534)
..++.+.+.+.+.+..++..++..+..+.. .-.++.+..++.+.++.+|..+..+|.++-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 468888999999988899888888655432 2235888999999999999999988876543
Q ss_pred hhCcHHHHHHHhhc-CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc--------------hHHHHH
Q 009471 317 EEGIVSVMIKLLDC-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--------------PQESAV 381 (534)
Q Consensus 317 e~g~i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~--------------~~~~a~ 381 (534)
...++.+++++.. ++. .++..+..+|..+-... .+..++..++++. ++..+.
T Consensus 104 -~~a~~~li~~l~~d~~~-~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 104 -PEAVPPLVELLENDENE-GVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred -hhHHHHHHHHHHcCCcH-hHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 4568888898884 554 89999999999877521 1566666665522 344444
Q ss_pred HHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471 382 GALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (534)
Q Consensus 382 ~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A 461 (534)
..+..+- ....++.+...+...+..++..|+.+|..+.... ....+.+...+.+.+..+|..+
T Consensus 171 ~~l~~~~---------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 171 EALGELG---------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHHcC---------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 4444443 2346788999999999999999999999988653 2446777888888889999988
Q ss_pred HHHHHHhc
Q 009471 462 AQAISSLV 469 (534)
Q Consensus 462 ~~aL~~L~ 469 (534)
..+|..+-
T Consensus 234 ~~~l~~~~ 241 (335)
T COG1413 234 LLALGEIG 241 (335)
T ss_pred HHHhcccC
Confidence 88888774
No 102
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.68 E-value=0.00098 Score=63.25 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=117.0
Q ss_pred hcCCHHHHHHHHHHHHHHhhcC--hHhHHHHhc--CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCH
Q 009471 164 QIGHLEAKHKALDSLVEAMKED--EKNVLAVMG--RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL 239 (534)
Q Consensus 164 ~~~~~~~~~~A~~~L~~l~~~~--~~~~~~i~~--~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i 239 (534)
.+.+.+.|.+|+..|..++.++ ......+.+ ...+..+...+++....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999998776 222222221 045567777777767888999999999998754322111234468
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch-----HHH
Q 009471 240 PPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE-----VRQ 313 (534)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~-----~~~ 313 (534)
+.|++.+.++...+++.|..+|..+..+-. ....+ ++.+...+.+.++.+|..++..+..+...-. ...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999999999999999999999988655 22322 2667777888999999999998888765322 111
Q ss_pred HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
...-..+++.+...+.++++ ++|..|-.++..+....+.
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~-~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADP-EVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-H-HHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHCCH
Confidence 11114567888888889887 8999999999998764333
No 103
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.65 E-value=0.0035 Score=65.52 Aligned_cols=271 Identities=17% Similarity=0.176 Sum_probs=175.8
Q ss_pred HHHHHHhhcChhhHHHHHhCCChHHHHHHH----------ccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHH
Q 009471 258 TISLQRLSMSAEMARAIVGHGGVRPLIEIC----------QTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIK 326 (534)
Q Consensus 258 ~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll----------~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ 326 (534)
..+|.-++.++.+...+....++..|.++- ...++.+...|+.+|+|+.. .+..|+.+.+.|..+.+++
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 456777777777777777777777777665 23577889999999999887 4588888999999999999
Q ss_pred HhhcC-----CChhHHHHHHHHHHHHccCChHHHHHHHhc-CChHHHHHhhcC--------Cc-----------hHHHHH
Q 009471 327 LLDCG-----ILLGSKEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PL-----------PQESAV 381 (534)
Q Consensus 327 ll~~~-----~~~~v~~~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~~L~~--------~~-----------~~~~a~ 381 (534)
.+... +. ++.....+.|.-++......+..++++ +++..+...+.. .. ....++
T Consensus 82 ~Lk~~~~~~~~~-d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 82 RLKNYSDSSQPS-DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHcccccCCCh-hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 99766 44 788889999999998777777777754 788877776632 10 135678
Q ss_pred HHHHHhhcCccHHHH-HhcCcHHHHHHHHhcC---------CHHHHHHHHHHHHHhcCC-hhH-------HHHH----Hh
Q 009471 382 GALRNLVGSVSQEVL-ISLGFFPRLVHVLKAG---------SLGAQQAAASALCRVCTS-AEM-------KKLV----GE 439 (534)
Q Consensus 382 ~aL~~La~~~~~~~l-~~~~~i~~Lv~lL~~~---------~~~v~~~A~~aL~~la~~-~~~-------~~~i----~~ 439 (534)
+++-|+......... .....++.++.++..- .......++.+|.++-.. .+. ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 888888761111111 1233455555544211 136677888888887321 111 0000 11
Q ss_pred cCchHHHHHhhc----C-C---ChHHHHHHHHHHHHhcCCCcchHHHHh----------------hCCCHHHHHhhcCCC
Q 009471 440 AGCTPLLIKLLE----A-K---PNSVREVAAQAISSLVTLPQNCREVKR----------------DDKSVPNLVQLLDPS 495 (534)
Q Consensus 440 ~g~v~~Lv~ll~----~-~---~~~v~~~A~~aL~~L~~~~~~~~~~~~----------------~~~~v~~Lv~lL~~~ 495 (534)
...+..|+++++ . . -.+.-...+.+|..++......+.+++ ....-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 125566666663 1 1 123445555666666654443333333 223445799999887
Q ss_pred CchhHHHHHHHHHHhhchh-HHHHHHHHhhcccccc
Q 009471 496 PQNTAKKYAVACLASLSPS-ARKLLERLERGRLRSF 530 (534)
Q Consensus 496 ~~~~~k~~a~~~L~~L~~~-~k~~~~~l~~~~~~~~ 530 (534)
. ..+|..+...|..||.. +.++++..+-|..-.+
T Consensus 321 ~-~~~k~~vaellf~Lc~~d~~~~v~~~GyG~AaG~ 355 (446)
T PF10165_consen 321 D-PQLKDAVAELLFVLCKEDASRFVKYVGYGNAAGF 355 (446)
T ss_pred C-chHHHHHHHHHHHHHhhhHHHHHHHcCchhHHHH
Confidence 4 67999999999999975 8888888776554433
No 104
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.65 E-value=0.0049 Score=66.83 Aligned_cols=334 Identities=16% Similarity=0.142 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHH
Q 009471 166 GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLI 243 (534)
Q Consensus 166 ~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv 243 (534)
+++-.|..|.+++..++...-..-..-+-..+++.+...+.......+...+.++..|..+.. ...... .-++..+-
T Consensus 621 ~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~ 699 (1233)
T KOG1824|consen 621 GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELP 699 (1233)
T ss_pred hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhh
Confidence 444555555555555543222111111122456666666666666667777777666654331 111111 12344455
Q ss_pred HHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCCh-------------------------------
Q 009471 244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS------------------------------- 292 (534)
Q Consensus 244 ~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~------------------------------- 292 (534)
.++...+..+.+.|..+|..+...++....-...-.++.++.+++++--
T Consensus 700 ~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~ 779 (1233)
T KOG1824|consen 700 PLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSL 779 (1233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 5666667778888888888888776655444445556666666665310
Q ss_pred -----------HHH-------HHHHHHHHHccCCchHHHHHHhhCcHHH-HHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471 293 -----------VSQ-------AAAACTLKNISAVPEVRQMLAEEGIVSV-MIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 293 -----------~~~-------~~a~~aL~nLa~~~~~~~~i~e~g~i~~-L~~ll~~~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
.+- ..++.+|...+. .+. ...... +.++...+....++..|.-.++.+-.+.+.
T Consensus 780 lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~-~~s------~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~ 852 (1233)
T KOG1824|consen 780 LTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP-QKS------KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL 852 (1233)
T ss_pred HcCCcccccccchhHHHHHHHHHHHHHHHHhcc-ccc------hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC
Confidence 001 111222222111 011 111222 333333333336777888888888774332
Q ss_pred HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-C--ccHHHHHh---------cCcHHHHHHHHhcCC------
Q 009471 354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-S--VSQEVLIS---------LGFFPRLVHVLKAGS------ 413 (534)
Q Consensus 354 ~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~--~~~~~l~~---------~~~i~~Lv~lL~~~~------ 413 (534)
... .+.-..+++.+.+ .+++..|..+|++++. + .....+.+ +=.+..|.+.+...+
T Consensus 853 s~~----~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~ 928 (1233)
T KOG1824|consen 853 SPQ----NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKP 928 (1233)
T ss_pred Ccc----hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhh
Confidence 211 1112245555655 4577788888888876 2 11111100 111223333333322
Q ss_pred -----------------HHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-Ccch
Q 009471 414 -----------------LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNC 475 (534)
Q Consensus 414 -----------------~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~ 475 (534)
...+--.+.+|+.|+..+ ....+|.|-..+.++.+..|-.+.-+..+...+ ++-.
T Consensus 929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e-------pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~i 1001 (1233)
T KOG1824|consen 929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE-------PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPI 1001 (1233)
T ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC-------hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCcc
Confidence 233333344444443220 023678888888999999998888888877654 5555
Q ss_pred HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHH
Q 009471 476 REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLER 521 (534)
Q Consensus 476 ~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~ 521 (534)
+.+.+ ..+...+.+++.. +..++..|+.++-+.+.+-..+++-
T Consensus 1002 d~~lk--~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrD 1044 (1233)
T KOG1824|consen 1002 DPLLK--QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRD 1044 (1233)
T ss_pred CHHHH--HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHH
Confidence 66665 4677777788765 4479999999998888774444433
No 105
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.036 Score=57.27 Aligned_cols=350 Identities=13% Similarity=0.083 Sum_probs=196.5
Q ss_pred hhchHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcChHhHH-HHh----------cCCcHHHHHHHhcCCCHHHHHHHHH
Q 009471 152 THGNTRELLARLQI--GHLEAKHKALDSLVEAMKEDEKNVL-AVM----------GRSNIAALVQLLTATSPRIREKTVT 218 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~--~~~~~~~~A~~~L~~l~~~~~~~~~-~i~----------~~g~v~~Lv~lL~~~~~~v~~~A~~ 218 (534)
+..++.-+.+.+-. .+++.|.-|.-.|.+-+..++..++ ... ++..-...++.|+++.+..-..|+.
T Consensus 37 F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaq 116 (858)
T COG5215 37 FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQ 116 (858)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 44445555555533 3355555555566555433332221 110 1111223456788888999999999
Q ss_pred HHHHhhcCCc-hhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCC-hHHHHH-HHcc-CChH
Q 009471 219 VICSLAESGS-CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGG-VRPLIE-ICQT-GDSV 293 (534)
Q Consensus 219 ~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~-i~~Lv~-ll~~-~~~~ 293 (534)
.+..++..+- +-. -.|....+++-..++ ...++..+..++.+++...+....+...+. +-.++. -++. .+..
T Consensus 117 l~aaIA~~Elp~~~---wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~a 193 (858)
T COG5215 117 LLAAIARMELPNSL---WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSA 193 (858)
T ss_pred HHHHHHHhhCcccc---chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHH
Confidence 9999987552 100 012334444444444 556788899999999886544322322332 233332 2333 3567
Q ss_pred HHHHHHHHHHH-ccCCchHHHHHHhhC----cHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471 294 SQAAAACTLKN-ISAVPEVRQMLAEEG----IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL 368 (534)
Q Consensus 294 ~~~~a~~aL~n-La~~~~~~~~i~e~g----~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~ 368 (534)
+|..++.+|.+ +-. .+..+-.++ .++..++.-+.++ .+++..+..||..|..-+-..-+...+........
T Consensus 194 vRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~ 269 (858)
T COG5215 194 VRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTG 269 (858)
T ss_pred HHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999887 332 223332222 2333444444444 48999999999998864333333444444444455
Q ss_pred HhhcC--CchHHHHHHHHHHhhcCc--cHHHH--------Hh--------cCcHHHHHHHHhc--CC-----HHHHHHHH
Q 009471 369 AYLDG--PLPQESAVGALRNLVGSV--SQEVL--------IS--------LGFFPRLVHVLKA--GS-----LGAQQAAA 421 (534)
Q Consensus 369 ~~L~~--~~~~~~a~~aL~~La~~~--~~~~l--------~~--------~~~i~~Lv~lL~~--~~-----~~v~~~A~ 421 (534)
+.+.+ +++...++..-..+|.++ ..-.. .+ ..++|.|+++|.. ++ -.+...|.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 56665 567777777777777621 11111 11 2358889999954 22 25667777
Q ss_pred HHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc--hHHHHhhCCCHHHHHhhcCCCCchh
Q 009471 422 SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN--CREVKRDDKSVPNLVQLLDPSPQNT 499 (534)
Q Consensus 422 ~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~--~~~~~~~~~~v~~Lv~lL~~~~~~~ 499 (534)
.+|.-++.... ..+.+ .+..-.-+-+.+++..-|+.|..++.++...+.. ...++. ..++.+..++.+. .--
T Consensus 350 sCLqlfaq~~g--d~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~--qalp~i~n~m~D~-~l~ 423 (858)
T COG5215 350 SCLQLFAQLKG--DKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP--QALPGIENEMSDS-CLW 423 (858)
T ss_pred HHHHHHHHHhh--hHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH--hhhHHHHHhcccc-eee
Confidence 77776664311 11111 1233333445678888899999999999644322 222332 4566666666532 334
Q ss_pred HHHHHHHHHHhhchh
Q 009471 500 AKKYAVACLASLSPS 514 (534)
Q Consensus 500 ~k~~a~~~L~~L~~~ 514 (534)
+|..+++|+..++.+
T Consensus 424 vk~ttAwc~g~iad~ 438 (858)
T COG5215 424 VKSTTAWCFGAIADH 438 (858)
T ss_pred hhhHHHHHHHHHHHH
Confidence 899999999999887
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.63 E-value=0.0023 Score=66.23 Aligned_cols=260 Identities=17% Similarity=0.142 Sum_probs=165.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc---hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH-
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR- 272 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~- 272 (534)
.|...+.+|++..+.+|+.|+...+.|+.--. ..+.+...|. .|..-|....+++......+++.+........
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 36677788999999999999999888864322 1233334343 25566677788888777777777654322211
Q ss_pred HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-h---HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~---~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La 348 (534)
+---.|.+|.|..+|++....++......+..++... + .++-| .+---|++.|.+-+. +++.+|...++.|+
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nK-eiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNK-EIRRNATETFGCIS 758 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhH-HHHHhhhhhhhhHH
Confidence 0012567899999999999999999888888888743 2 23222 233346777777776 89999999998887
Q ss_pred cCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 349 ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 349 ~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
.. +--..++..|+ ++-.+++.-.++-..++-.-..+.-.-..++|.|+.=-..++..||.-.+++++.+-
T Consensus 759 ~a-------iGPqdvL~~Ll---nnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 759 RA-------IGPQDVLDILL---NNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred hh-------cCHHHHHHHHH---hcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 51 11112233333 443333222221111111000000011335777777777788899999999999887
Q ss_pred CC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc
Q 009471 429 TS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474 (534)
Q Consensus 429 ~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~ 474 (534)
.. ...++++ .-..|.|-+-+.+.++.-|.-|+..+.+|+.+.++
T Consensus 829 eyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 829 EYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 54 4445555 33477888888888998899999999999976443
No 107
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.60 E-value=0.0011 Score=52.45 Aligned_cols=87 Identities=28% Similarity=0.338 Sum_probs=69.9
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471 239 LPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (534)
Q Consensus 239 i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (534)
|+.|++.| +++++.++..++.+|.++.. . ..++.|+.++.++++.++..++.+|..+. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----~------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----P------EAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----H------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----H------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899988 78899999999999995521 1 22589999999999999999999999873 3
Q ss_pred hCcHHHHHHHhhcCCChhHHHHHHHHHH
Q 009471 318 EGIVSVMIKLLDCGILLGSKEYAAECLQ 345 (534)
Q Consensus 318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~ 345 (534)
...++.|.+++.+++...++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 5579999999988766456888888774
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=0.0051 Score=67.27 Aligned_cols=347 Identities=15% Similarity=0.141 Sum_probs=215.3
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--h
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--C 229 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~ 229 (534)
.....+.++.....++...+.........+...-.. .......+++...++++...+.+...+.-...++.... +
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence 334455555555555555555555555555431110 11122447888888888888888888888888876543 5
Q ss_pred hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (534)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (534)
...+....+++.+-.+..+.+..++...+.....+..-...-..+ ....+.+...+++..+.++......+..+-...
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti--~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTI--SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCc--cccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 666667777888888888888888887777666664322210111 223466777788888888887776654443322
Q ss_pred -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471 310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN 386 (534)
Q Consensus 310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~ 386 (534)
...........++.+..+-.+... .++......+..++.... ..++....-+.+...+.+ ..+++.|...+.-
T Consensus 469 ~v~g~~~~s~slLp~i~el~~d~~w-Rvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAEDLLW-RVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred CcccchhhhhhhhhhhhhhccchhH-HHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 233334445567777777766654 778888888888886332 233333333333344444 5678888888888
Q ss_pred hhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471 387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (534)
Q Consensus 387 La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~ 466 (534)
++..-. ........++.++.....++.-.+...+.++..++. -+-..+.....+|.+.++..+..+++|..++..|.
T Consensus 545 l~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~--v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~ 621 (759)
T KOG0211|consen 545 LVETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE--VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLP 621 (759)
T ss_pred HHHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH--HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHH
Confidence 876222 222334457777777766666677777777776652 22223333345999999999999999999999999
Q ss_pred HhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 467 SLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 467 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+...-.. . .. .+.+.++.+-|..+++-.+|.+|.-++..+..+
T Consensus 622 ~i~~~L~~--~-~~-~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 622 KILKLLDE--S-VR-DEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHhhcch--H-HH-HHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 88633211 1 11 234455555555555556888887776666544
No 109
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.48 E-value=0.008 Score=62.84 Aligned_cols=253 Identities=15% Similarity=0.133 Sum_probs=163.7
Q ss_pred HHHHHhhcChHhHHHHhcCCcHHHHHHHh----------cCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHH
Q 009471 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLL----------TATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRL 245 (534)
Q Consensus 177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL----------~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~l 245 (534)
+|.-+. .++.+...+....++..|.++- ...++.+...|+++|+|+....+ .|..+++.|..+.++..
T Consensus 4 ~LRiLs-Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 4 TLRILS-RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHc-cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 333333 3444555666667777777765 23458999999999999998776 88899999999999999
Q ss_pred HccC-----CHHHHHHHHHHHHHhhcC-hhhHHHHHh-CCChHHHHHHHcc---------C--------ChHHHHHHHHH
Q 009471 246 VESG-----STVGKEKATISLQRLSMS-AEMARAIVG-HGGVRPLIEICQT---------G--------DSVSQAAAACT 301 (534)
Q Consensus 246 L~~~-----~~~~~~~A~~~L~~Ls~~-~~~~~~l~~-~g~i~~Lv~ll~~---------~--------~~~~~~~a~~a 301 (534)
|+.. +.++.-...+.|.-++.. .+.+..+++ ++++..++..+.. . +......++.+
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9987 778888899999888764 555656655 7888888776642 0 22334677888
Q ss_pred HHHccCCchHHHHHHhhCcHHHHHHHhhcC--------CChhHHHHHHHHHHHHccCChHH-------HHH----HHhcC
Q 009471 302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCG--------ILLGSKEYAAECLQNLTASNENL-------RRS----VVSEG 362 (534)
Q Consensus 302 L~nLa~~~~~~~~i~e~g~i~~L~~ll~~~--------~~~~v~~~a~~~L~~La~~~~~~-------~~~----i~~~g 362 (534)
+.|+.........-.+...++.++.++..- .......+++.+|.|+-...... ... .....
T Consensus 163 lFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~ 242 (446)
T PF10165_consen 163 LFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMD 242 (446)
T ss_pred HHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChH
Confidence 889876432211111233344444443211 11256778888888874321111 000 01233
Q ss_pred ChHHHHHhhcC----------CchHHHHHHHHHHhhc-Cc-cHHHHH----------------hcCcHHHHHHHHhcCCH
Q 009471 363 GIRSLLAYLDG----------PLPQESAVGALRNLVG-SV-SQEVLI----------------SLGFFPRLVHVLKAGSL 414 (534)
Q Consensus 363 ~l~~L~~~L~~----------~~~~~~a~~aL~~La~-~~-~~~~l~----------------~~~~i~~Lv~lL~~~~~ 414 (534)
.+..|+++|+. .+...+.+.+|.+++. .. .+..+. ...+-.+|++++.+..+
T Consensus 243 ~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~ 322 (446)
T PF10165_consen 243 VVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDP 322 (446)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCc
Confidence 46677777742 1345677788888877 22 222111 13457789999988889
Q ss_pred HHHHHHHHHHHHhcCC
Q 009471 415 GAQQAAASALCRVCTS 430 (534)
Q Consensus 415 ~v~~~A~~aL~~la~~ 430 (534)
.++..++..+..||..
T Consensus 323 ~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 323 QLKDAVAELLFVLCKE 338 (446)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999999999854
No 110
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0014 Score=66.76 Aligned_cols=177 Identities=16% Similarity=0.212 Sum_probs=132.8
Q ss_pred HHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCC
Q 009471 256 KATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGIL 333 (534)
Q Consensus 256 ~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~ 333 (534)
.++.+|..++.+-.. +-.+.+...++.|+.+|.+++..+..-+...++|+.. .+..+..+.+.|++..++.++.+.++
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 344455555554333 4457778889999999998777777888888999876 56788889999999999999998877
Q ss_pred hhHHHHHHHHHHHHccCChH-HHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhcC--c---cHHHHH---hcC-c
Q 009471 334 LGSKEYAAECLQNLTASNEN-LRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVGS--V---SQEVLI---SLG-F 401 (534)
Q Consensus 334 ~~v~~~a~~~L~~La~~~~~-~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~~--~---~~~~l~---~~~-~ 401 (534)
..|.+..+.++++..+.+. .+-......|+..++.+..+| .+|..++..|+|+.-+ . ..+... ... +
T Consensus 488 -aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 488 -ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred -hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 8999999999999986544 344566788899999999885 5899999999999862 1 111111 111 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCChhH
Q 009471 402 FPRLVHVLKAGSLGAQQAAASALCRVCTSAEM 433 (534)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~ 433 (534)
...|++.++..+|-.-...+..|.+++...+.
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~ 598 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDT 598 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccch
Confidence 56777778888886666778888888755333
No 111
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0025 Score=66.54 Aligned_cols=254 Identities=14% Similarity=0.129 Sum_probs=152.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh------hhHH
Q 009471 199 AALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA------EMAR 272 (534)
Q Consensus 199 ~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~------~~~~ 272 (534)
.-|..+..+.|..+|..|+..|..|.+....-.. .....++++.+.+..++..|...++-.+.-. ++-+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 3367777777788888888888887764432222 3667788899998889988876665544221 1100
Q ss_pred HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hH----------------------------------------
Q 009471 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV---------------------------------------- 311 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~---------------------------------------- 311 (534)
.=....+...+...+.+.+..+|..|+.+|+.+-..+ +.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 0001122344555555666666655555554443321 11
Q ss_pred ----------HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHH
Q 009471 312 ----------RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES 379 (534)
Q Consensus 312 ----------~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~ 379 (534)
-..|+..|+-..++.-++++.- +|+.+|+..+..|+...+..... .+.-|+.++.+ .++|..
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~-EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFY-EVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHH-HHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHH
Confidence 1223334444555555555554 89999999999999876654432 36778888877 678999
Q ss_pred HHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHH
Q 009471 380 AVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459 (534)
Q Consensus 380 a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~ 459 (534)
|+.+|..++.. ..+...-++.+...|.+.++++++..-..|.+.=.+....-.+ ++..|.+-+. ..|.=+.
T Consensus 430 ai~aL~~Is~~----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m----~v~~lL~~L~-kyPqDrd 500 (823)
T KOG2259|consen 430 AIFALTMISVH----LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM----CVAHLLKNLG-KYPQDRD 500 (823)
T ss_pred HHHHHHHHHHH----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHhh-hCCCCcH
Confidence 99999999863 2233445788999999999999988887777654332222222 2333333333 2222334
Q ss_pred HHHHHHHHhcCCC
Q 009471 460 VAAQAISSLVTLP 472 (534)
Q Consensus 460 ~A~~aL~~L~~~~ 472 (534)
....++..+..+.
T Consensus 501 ~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 501 EILRCMGRIGQNH 513 (823)
T ss_pred HHHHHHHHHhccC
Confidence 4555666665443
No 112
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.045 Score=58.37 Aligned_cols=315 Identities=15% Similarity=0.137 Sum_probs=193.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHh
Q 009471 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQL-LTATSPRIREKTVTVICSLAESGSCENWLVS 235 (534)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~l-L~~~~~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (534)
.++...|..|+.+.|.+|+..+..+....++.. +..-.+++. |-+.+.+++.. +...+.+...-.....+.+
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p------~Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~~ 95 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLP------SLLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLLH 95 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCch------HHHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccHH
Confidence 356677899999999999998887765444321 122233332 33444444443 3455555432221111211
Q ss_pred cC--CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHH
Q 009471 236 EG--VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313 (534)
Q Consensus 236 ~g--~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (534)
+- ++..+-+=|+.++..+|....+.|+.|-. ++-...+ +|.+...+.+.++-+|+.|..++..+-.+. .
T Consensus 96 EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE-~ELlepl-----~p~IracleHrhsYVRrNAilaifsIyk~~---~ 166 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKE-PELLEPL-----MPSIRACLEHRHSYVRRNAILAIFSIYKNF---E 166 (948)
T ss_pred HHHHHHHHHhhhccCchHhhcchhhhhhhhcCc-HHHhhhh-----HHHHHHHHhCcchhhhhhhheeehhHHhhh---h
Confidence 11 23445556677899999999999998854 3333333 477778888899999999988887665431 1
Q ss_pred HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-----CchHHHHHHHHHHhh
Q 009471 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-----PLPQESAVGALRNLV 388 (534)
Q Consensus 314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-----~~~~~~a~~aL~~La 388 (534)
.++ ..+-..+-+.|..+.++..+.+|...|...- ++.. +..|...++. +..+...+..++.-|
T Consensus 167 ~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D---~ErA--------l~Yl~~~idqi~~~~~~LqlViVE~Irkv~ 234 (948)
T KOG1058|consen 167 HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTD---PERA--------LNYLLSNIDQIPSFNDSLQLVIVELIRKVC 234 (948)
T ss_pred hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcC---HHHH--------HHHHHhhHhhccCccHHHHHHHHHHHHHHH
Confidence 111 2223334444443333367888776665532 2221 3333333332 345667777777777
Q ss_pred c-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHH
Q 009471 389 G-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAIS 466 (534)
Q Consensus 389 ~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~ 466 (534)
. ++. ....++..+..+|.+.++.|..+|+..|.+++..+..-+.- ...+++++. ..+..+.--...-|.
T Consensus 235 ~~~p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~ 305 (948)
T KOG1058|consen 235 LANPA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLS 305 (948)
T ss_pred hcCHH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHH
Confidence 5 211 23557899999999999999999999999999887655543 445566654 233444444444444
Q ss_pred HhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 467 SLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 467 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+. .+.+.+++ +.+.-.++.|++. +-+++..+......|+.+
T Consensus 306 ~l~---~~~~~il~--~l~mDvLrvLss~-dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 306 ELK---ALHEKILQ--GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHh---hhhHHHHH--HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhh
Confidence 442 55566666 5778888888886 456888888888888877
No 113
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.30 E-value=0.022 Score=52.82 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=105.1
Q ss_pred HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccC
Q 009471 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESG 249 (534)
Q Consensus 177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~ 249 (534)
+|.+.....|+.+..+.+...--.|-.+|... ....|..++.+++.+...++ .-..+...+++|..++.++.+
T Consensus 101 ~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G 180 (293)
T KOG3036|consen 101 ALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG 180 (293)
T ss_pred HHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc
Confidence 34444444567778888766655566666543 37789999999999998775 566777899999999999999
Q ss_pred CHHHHHHHHHHHHHhhcChhhHHHHHh-CC-------ChHHH-HHHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471 250 STVGKEKATISLQRLSMSAEMARAIVG-HG-------GVRPL-IEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (534)
Q Consensus 250 ~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g-------~i~~L-v~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (534)
+...+..|..++..+-.++..-..+++ .. .+..+ ..+.+.+++....++.++..+|+.++..|..+..
T Consensus 181 SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 181 SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999998877765544433 11 11222 2344567888889999999999999988887754
No 114
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.29 E-value=0.0012 Score=68.22 Aligned_cols=257 Identities=13% Similarity=0.119 Sum_probs=162.8
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH---HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHH
Q 009471 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR---AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314 (534)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~---~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (534)
++..++.+|++.++.++..|+.....|+.--.++. .+...|. .|.+-+....|++.-..+.+++.+......+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 46777888999999999999999888875433322 2222332 355677778899888888877777654432211
Q ss_pred H-HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH---HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhh
Q 009471 315 L-AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN---LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV 388 (534)
Q Consensus 315 i-~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~---~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La 388 (534)
- --.|++|.+..+|++.+. .++.+.+..++.|+...+. .|+-+. .-=-|+..|.+ .+++..|...++.++
T Consensus 683 qpPi~~ilP~ltPILrnkh~-Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQ-KVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred CCchhhccccccHhhhhhhH-HHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 0 016889999999999887 8999999999999986554 122111 01124444443 678999999999998
Q ss_pred cCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471 389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (534)
Q Consensus 389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L 468 (534)
..-.++ .++..|++-|+..+...+....-++.-.+.. + +-..++|.|+.=...++..+|.-.+.+++.+
T Consensus 759 ~aiGPq-----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~---c---gpfsVlP~lm~dY~TPe~nVQnGvLkam~fm 827 (975)
T COG5181 759 RAIGPQ-----DVLDILLNNLKVQERQQRVCTSVAISIVAEY---C---GPFSVLPTLMSDYETPEANVQNGVLKAMCFM 827 (975)
T ss_pred hhcCHH-----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---c---CchhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence 733332 2345555555444444444444444333321 1 1134677777766778888999999999988
Q ss_pred cCCCcch-HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 469 VTLPQNC-REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 469 ~~~~~~~-~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
...-.+. ...+- ...|.|-..|... +..-+..|..++.+|+-+
T Consensus 828 Feyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 828 FEYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence 7554332 23332 2334444444443 335678888888888766
No 115
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.24 E-value=0.00079 Score=44.56 Aligned_cols=40 Identities=33% Similarity=0.490 Sum_probs=36.4
Q ss_pred hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 268 ~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
++++..+.+.|+++.|+.++.++++.++..++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4577889999999999999999999999999999999873
No 116
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.077 Score=60.87 Aligned_cols=273 Identities=17% Similarity=0.152 Sum_probs=154.7
Q ss_pred hhhhhchHHHHHHHH---hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471 149 EATTHGNTRELLARL---QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE 225 (534)
Q Consensus 149 ~~~~~~~i~~Ll~~L---~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (534)
.+.++.+.+.|+.+| +-+.......|+..+.+.+-.+++....-.-..+..-|+.-|.+....+|+.++-+|..|-.
T Consensus 989 ~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence 455566677777666 23333345578889999887776543333333567777777888889999999999999988
Q ss_pred CCch---hHHHHhcCCHHHHHHHHccCCHHHHH---HHHHHHHHhhcC---hhh----HHHHHhCCChHHHH--HHHccC
Q 009471 226 SGSC---ENWLVSEGVLPPLIRLVESGSTVGKE---KATISLQRLSMS---AEM----ARAIVGHGGVRPLI--EICQTG 290 (534)
Q Consensus 226 ~~~~---~~~l~~~g~i~~Lv~lL~~~~~~~~~---~A~~~L~~Ls~~---~~~----~~~l~~~g~i~~Lv--~ll~~~ 290 (534)
..+. .+.+- .....+.+.+++-...+|+ .++.+|..++.. ..+ ++.+ ...+|.|+ .++ +.
T Consensus 1069 g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~ 1143 (1702)
T KOG0915|consen 1069 GRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SK 1143 (1702)
T ss_pred CCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cc
Confidence 7653 23322 4567777888776666665 455666666421 111 1111 12234333 122 45
Q ss_pred ChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc-CChHHHHHHHh-------
Q 009471 291 DSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVS------- 360 (534)
Q Consensus 291 ~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~------- 360 (534)
-+++|..+..++..|+... ..+..+ ...++.|+.....-.+.-.-+-++++ .|+.. .-+..|..+.+
T Consensus 1144 v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeT 1220 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMET 1220 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHH
Confidence 6789999999999998754 233322 34566666666544331122233333 22111 01112211111
Q ss_pred -------------cCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCHHHHHHHHH
Q 009471 361 -------------EGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAAS 422 (534)
Q Consensus 361 -------------~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~ 422 (534)
+..+|.+.+++++ -.++..|..++.-|+..-. ..+ .....+..++..+++.++.+++.-+.
T Consensus 1221 i~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~-~emtP~sgKll~al~~g~~dRNesv~kafAs 1299 (1702)
T KOG0915|consen 1221 INKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG-SEMTPYSGKLLRALFPGAKDRNESVRKAFAS 1299 (1702)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc-cccCcchhHHHHHHhhccccccHHHHHHHHH
Confidence 2335555555554 3456677777777764100 001 11123455555557788899998888
Q ss_pred HHHHhcCC
Q 009471 423 ALCRVCTS 430 (534)
Q Consensus 423 aL~~la~~ 430 (534)
+.+.++..
T Consensus 1300 AmG~L~k~ 1307 (1702)
T KOG0915|consen 1300 AMGYLAKF 1307 (1702)
T ss_pred HHHHHHhc
Confidence 88888753
No 117
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.18 E-value=0.015 Score=58.04 Aligned_cols=213 Identities=12% Similarity=0.099 Sum_probs=157.4
Q ss_pred HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH-----HHHHH-h-cCChHHHHHhhcCCchHHHHHHHH
Q 009471 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL-----RRSVV-S-EGGIRSLLAYLDGPLPQESAVGAL 384 (534)
Q Consensus 312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~-----~~~i~-~-~g~l~~L~~~L~~~~~~~~a~~aL 384 (534)
...+...+.+..|+..+..-+. +.+..+..+..++-...... ...+. + ...+..|+..-+++++--.+...|
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~f-EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDF-ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-H-HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHhhhCCC-cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHH
Confidence 3456678899999999988887 78999999999988743222 22333 2 345666666667789999999999
Q ss_pred HHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcC---chHHHHHhhcCCChHHHH
Q 009471 385 RNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAG---CTPLLIKLLEAKPNSVRE 459 (534)
Q Consensus 385 ~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g---~v~~Lv~ll~~~~~~v~~ 459 (534)
+.++. +.....++....+..+++.++.++-++...|..++..+- .+......+.... ++....+++.+++--++.
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 99998 555677788888999999999999999999999999854 6665555554443 677888999999999999
Q ss_pred HHHHHHHHhcCCCcchH---HHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHHhhcc
Q 009471 460 VAAQAISSLVTLPQNCR---EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERLERGR 526 (534)
Q Consensus 460 ~A~~aL~~L~~~~~~~~---~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~~ 526 (534)
.+...|..|..+..|.. .++.+...+..++.+|.+. ...++..|..++--...+ ++.+.+.|.+||
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr 299 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR 299 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 99999999999998876 4555666777788888876 446888887666555544 666777666554
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.15 E-value=0.0014 Score=62.13 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=92.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhc
Q 009471 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSE 236 (534)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~ 236 (534)
.+...+.+........|+..+..++..-........+ ..++.|++.+.++...+++.|..+|..+...-. ....+
T Consensus 57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~--- 132 (228)
T PF12348_consen 57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL--- 132 (228)
T ss_dssp HHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH---
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH---
Confidence 4444455555566778888888887644433333332 678999999999999999999999999988765 22222
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHh----CCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVG----HGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~----~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
++.+...+.+.++.++..++..+..+...-. ....+-. ...++.+...+.++++++|..|-.+++.+..
T Consensus 133 --~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 133 --LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 5666677788899999999999988865433 1111111 2345788888999999999999999988854
No 119
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.011 Score=63.34 Aligned_cols=236 Identities=19% Similarity=0.154 Sum_probs=153.7
Q ss_pred cCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH-HhhcChhhHHHHHhCCChHHHHHHHccCChHH-HHHHHHHH
Q 009471 225 ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQ-RLSMSAEMARAIVGHGGVRPLIEICQTGDSVS-QAAAACTL 302 (534)
Q Consensus 225 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~-~~~a~~aL 302 (534)
....-+...++.|+...|+++.....+..+..+..+|. .+....+.. ...++.+...+......+ ...++.++
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 34446778889999999999999888888888888877 333222111 122344444443222111 25688899
Q ss_pred HHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh-cCChHHHHHhhcC--CchHH
Q 009471 303 KNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--PLPQE 378 (534)
Q Consensus 303 ~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~~L~~--~~~~~ 378 (534)
.||+..+ ..+..+..+-.++.+-.++...++ ..|..++.++.||..+..-..+.+++ ...++.....++. .....
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~-~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENP-ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccH-HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 9999855 667778877777777777766666 78999999999999876666666665 4445544444544 33444
Q ss_pred HHHHHHHHhhc--CccHH-HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCC
Q 009471 379 SAVGALRNLVG--SVSQE-VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKP 454 (534)
Q Consensus 379 ~a~~aL~~La~--~~~~~-~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~ 454 (534)
.+++++..++. ..... ..--..+...++.++.+.++++|......+.|+... .+....+.....++.+..+-.-..
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 55555554554 22222 333356788899999999999999999999996643 566666666666666655544333
Q ss_pred hHHHHHHHHHHH
Q 009471 455 NSVREVAAQAIS 466 (534)
Q Consensus 455 ~~v~~~A~~aL~ 466 (534)
...++.+..+|.
T Consensus 726 a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 726 APKREDAAPCLS 737 (748)
T ss_pred hhhhhhhhhHHH
Confidence 444555555444
No 120
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.068 Score=61.25 Aligned_cols=346 Identities=15% Similarity=0.086 Sum_probs=182.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHH-hcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CCchhHHH
Q 009471 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAV-MGRSNIAALVQLLTATSPRIREKTVTVICSLAE--SGSCENWL 233 (534)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i-~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~--~~~~~~~l 233 (534)
..+...+-+.+++.|..++.-|..+...-...+... .-.....++.++|.+.|.-+|+.|.+-++.+-+ +.+.++.+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence 334455567899999998888877765333221111 122445889999999998899998877776533 22344433
Q ss_pred HhcCCHHHHHHHHccC---------CH------------H-HHHHHHHHHHHhhcC---hhhHHHHH---hC--------
Q 009471 234 VSEGVLPPLIRLVESG---------ST------------V-GKEKATISLQRLSMS---AEMARAIV---GH-------- 277 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~---------~~------------~-~~~~A~~~L~~Ls~~---~~~~~~l~---~~-------- 277 (534)
+..|+.-|..+ +. + ..-....=|++|+.+ |+-...|. .|
T Consensus 901 -----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 901 -----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred -----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 44444444211 00 0 011222334444432 22111111 11
Q ss_pred ----------------------CChHHHHHHHccCChHHHHHHHHHHHHc-cCCchHHHHHHhhCcHHHHHHHhhcCCCh
Q 009471 278 ----------------------GGVRPLIEICQTGDSVSQAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILL 334 (534)
Q Consensus 278 ----------------------g~i~~Lv~ll~~~~~~~~~~a~~aL~nL-a~~~~~~~~i~e~g~i~~L~~ll~~~~~~ 334 (534)
..||.|.++=-++++.+|. +..-+||. ..++.....-.-..+++-|+.-+.+...
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kew- 1053 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEW- 1053 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhH-
Confidence 1244444444455666664 55555654 3333221111114456666666666666
Q ss_pred hHHHHHHHHHHHHccCChHH--HHHHHhcCChHHHHHhhcC--CchHHHH---HHHHHHhhc--CccHHHHHhcCcHHHH
Q 009471 335 GSKEYAAECLQNLTASNENL--RRSVVSEGGIRSLLAYLDG--PLPQESA---VGALRNLVG--SVSQEVLISLGFFPRL 405 (534)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~--~~~i~~~g~l~~L~~~L~~--~~~~~~a---~~aL~~La~--~~~~~~l~~~~~i~~L 405 (534)
.+|+.++-+|..|-.+.+.- .+.+ ......+++.++| ..+|+.| +.+|..+|- .+.....-...++..+
T Consensus 1054 RVReasclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~i 1131 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDII 1131 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHH
Confidence 89999999999999865432 1211 1345566777777 5566654 555555554 1111111112233444
Q ss_pred HHHH-----hcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHH-----------HHHHHHHHH-
Q 009471 406 VHVL-----KAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSV-----------REVAAQAIS- 466 (534)
Q Consensus 406 v~lL-----~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v-----------~~~A~~aL~- 466 (534)
+.+| -+.-++++..+...+..|+.+ ...+..+ ...+|.|++....-.+.+ ...|...+.
T Consensus 1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~ 1209 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRA 1209 (1702)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4433 145579999999999999965 3333333 335666666665433332 222222222
Q ss_pred HhcCCCcch----------HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 467 SLVTLPQNC----------REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 467 ~L~~~~~~~----------~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+.+...+-. ..-+- +..+|.+.+++.++-+-..|-.++..+..|+..
T Consensus 1210 s~aksspmmeTi~~ci~~iD~~vL-eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1210 SAAKSSPMMETINKCINYIDISVL-EELIPRLTELVRGSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred hhhcCCcHHHHHHHHHHhhhHHHH-HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence 111111110 11111 246778888888775545677777777766644
No 121
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.099 Score=56.15 Aligned_cols=297 Identities=16% Similarity=0.137 Sum_probs=164.8
Q ss_pred hchHHHHHHHHhcCC---HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch
Q 009471 153 HGNTRELLARLQIGH---LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC 229 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~---~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~ 229 (534)
+..+..++..+..+. +-.+..-.+.-..++.+++..... ..+.+-.+|++...-+...|++++..+.....
T Consensus 204 rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~-----~~~fl~s~l~~K~emV~~EaArai~~l~~~~~- 277 (865)
T KOG1078|consen 204 RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSP-----LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS- 277 (865)
T ss_pred HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhh-----HHHHHHHHHhchhHHHHHHHHHHHhhccccCH-
Confidence 445666666554332 222322333333344433332211 24555566766666667777777777655432
Q ss_pred hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHH---------HHhCC---ChHHHHHHHccCChHHH--
Q 009471 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA---------IVGHG---GVRPLIEICQTGDSVSQ-- 295 (534)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~---------l~~~g---~i~~Lv~ll~~~~~~~~-- 295 (534)
+.+.. .+..|--++.+....+|-.|.++|..++...+.+-. +...+ ...++..+++.+.....
T Consensus 278 -r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~r 354 (865)
T KOG1078|consen 278 -RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDR 354 (865)
T ss_pred -hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHH
Confidence 11111 466666666666667777777777777654332211 11100 11222334444332221
Q ss_pred --HHHHHHHHHccCCc------hH---HHHH--HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471 296 --AAAACTLKNISAVP------EV---RQML--AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG 362 (534)
Q Consensus 296 --~~a~~aL~nLa~~~------~~---~~~i--~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g 362 (534)
........+++..- .. +..+ -..+.+..|..+|++....+-+...+.++..+...++..++ .
T Consensus 355 Lm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~ 429 (865)
T KOG1078|consen 355 LMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----R 429 (865)
T ss_pred HHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----H
Confidence 22222222332211 00 0111 11445667777775433336677788888888776665543 4
Q ss_pred ChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcC
Q 009471 363 GIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAG 441 (534)
Q Consensus 363 ~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g 441 (534)
++..|..++.+.+...-+...|.-|... ++........+..+...+--.+..++..|..+|.++... +..+..+
T Consensus 430 ~L~~LCefIEDce~~~i~~rILhlLG~E-gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI---- 504 (865)
T KOG1078|consen 430 GLEHLCEFIEDCEFTQIAVRILHLLGKE-GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSI---- 504 (865)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhcc-CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccH----
Confidence 5778888888877777777777777651 111112334566666666667788999999999999843 3333332
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 442 CTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 442 ~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
.-.|.+.+.+.+.++|+.|...|..+-
T Consensus 505 -~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 505 -LVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -HHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 556777788999999999999998885
No 122
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.97 E-value=0.12 Score=49.91 Aligned_cols=226 Identities=15% Similarity=0.068 Sum_probs=144.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcC-CHHHHHHHHcc--CCHHHHHHHHHHHHHhhcChhhHHHHHh-CC
Q 009471 203 QLLTATSPRIREKTVTVICSLAESGSCENWLVSEG-VLPPLIRLVES--GSTVGKEKATISLQRLSMSAEMARAIVG-HG 278 (534)
Q Consensus 203 ~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g-~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g 278 (534)
++++.=++-.+--|+.++.++....+.|..+-.++ .-..++.+++. +...+|....-+++-++.+++.++.+-. ..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444456688999999999999988766665554 44567777776 3678999999999999999888855443 44
Q ss_pred ChHHHHHHHccC-ChHHHHHHHHHHHHccC-Cc-hHHHHHHhhC-cHHHHHHHhhcCCC-hhHHHHH---HHHHH----H
Q 009471 279 GVRPLIEICQTG-DSVSQAAAACTLKNISA-VP-EVRQMLAEEG-IVSVMIKLLDCGIL-LGSKEYA---AECLQ----N 346 (534)
Q Consensus 279 ~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~-~~-~~~~~i~e~g-~i~~L~~ll~~~~~-~~v~~~a---~~~L~----~ 346 (534)
.+..|+.+.+.. ...+-+.+++++.|+.. .| +.-..+.-.| +.++.--+.+.+.. ++.+... -..|- .
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 566677776643 33455778899999887 33 3333333344 44444333333221 1222111 11111 1
Q ss_pred HccC--------------Ch---------HHHHHHHhc--CChHHHHHhhcC--Cc-hHHHHHHHHHHhhc--CccHHHH
Q 009471 347 LTAS--------------NE---------NLRRSVVSE--GGIRSLLAYLDG--PL-PQESAVGALRNLVG--SVSQEVL 396 (534)
Q Consensus 347 La~~--------------~~---------~~~~~i~~~--g~l~~L~~~L~~--~~-~~~~a~~aL~~La~--~~~~~~l 396 (534)
++.. ++ .+-..+.+. ..+..|.++++. +. .-..|+.-+..+.+ |+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 1110 00 011122221 246677777764 43 34567777777776 7777888
Q ss_pred HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 397 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
..+|+=..+++++++.+++|+-+|..++..+.
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 88999999999999999999999999987764
No 123
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.94 E-value=0.0022 Score=42.34 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=35.1
Q ss_pred HhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471 187 KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE 225 (534)
Q Consensus 187 ~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (534)
+++..+++.|+++.|++++++++++++..++++|.+++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 366778899999999999999899999999999999873
No 124
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.66 Score=49.93 Aligned_cols=319 Identities=16% Similarity=0.142 Sum_probs=189.2
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
...+|.+.++|...+..+|+.|.-++..+-...+ .++. ++-+.+-++| ...|+..+.+|...|... +++
T Consensus 133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~--D~E--- 202 (948)
T KOG1058|consen 133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLIP-DAPELIESFLLTEQDPSCKRNAFLMLFTT--DPE--- 202 (948)
T ss_pred hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhcC-ChHHHHHHHHHhccCchhHHHHHHHHHhc--CHH---
Confidence 3456777778888888888888888877765422 1221 2222233333 445677777776555433 221
Q ss_pred HHHhcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 232 WLVSEGVLPPLIRLVE---SGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~---~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
.++..+..... +-++.++-.....++..+...+. +..+ |+.+..+|.+.++.++..|+++|.+|+.
T Consensus 203 -----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 203 -----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred -----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccC
Confidence 11222222222 23456666677777777664332 2222 4888999999999999999999999998
Q ss_pred CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHH
Q 009471 308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALR 385 (534)
Q Consensus 308 ~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~ 385 (534)
.|..-+.- ...+++++.+..+..++.-.+.-|..+...+...- .|.+-.++++|..| +++..++....
T Consensus 273 ~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il-----~~l~mDvLrvLss~dldvr~Ktldi~l 342 (948)
T KOG1058|consen 273 DPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALHEKIL-----QGLIMDVLRVLSSPDLDVRSKTLDIAL 342 (948)
T ss_pred CHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHH-----HHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 87544433 45566776544443566666666666664333221 23455677777764 57888888888
Q ss_pred HhhcCccHHHHHhcCcHHHHHH-HHhcC------CHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471 386 NLVGSVSQEVLISLGFFPRLVH-VLKAG------SLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (534)
Q Consensus 386 ~La~~~~~~~l~~~~~i~~Lv~-lL~~~------~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v 457 (534)
.|+...+...++ ..|-. +.+.. +..-++.-..++..++.. ++....+ ++.|++.+.+.++..
T Consensus 343 dLvssrNvediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv-----V~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 343 DLVSSRNVEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV-----VSLLLDFISDSNEAA 412 (948)
T ss_pred hhhhhccHHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH-----HHHHHHHhccCCHHH
Confidence 887744433332 11211 11111 235577888888888855 7777666 899999998777654
Q ss_pred HHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHH
Q 009471 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSAR 516 (534)
Q Consensus 458 ~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k 516 (534)
....+.-+......-++.+.. .+..|++-+..=....+-..++|.+..-+.+-.
T Consensus 413 as~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 413 ASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 444444444443333333322 334455444432223466788888888877733
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.91 E-value=0.93 Score=49.73 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=113.3
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (534)
+..+.+++++.+.+.|.+.|+-.-..|...++.+|.-. + =.++.+.+=++++++.+|..|+++++.+-..+ .
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~e-l-- 124 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVKE-L-- 124 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HHHHHHHhhccCCCHHHHHHHHHHHHhcChHH-H--
Confidence 55678888888888888988888778888887777332 2 24788888899999999999999998874332 1
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~ 308 (534)
-...++++.++++++++.+|..|+-++.++-.-+ ...+.+.|.+..+..++.+.+|.+...|..+|..+-..
T Consensus 125 ---~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 ---LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ---HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2235899999999999999999999999985422 23344567788888999999999999999999887653
No 126
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.90 E-value=0.074 Score=59.64 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=157.4
Q ss_pred hHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----Cc
Q 009471 155 NTRELLARLQI-GHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES----GS 228 (534)
Q Consensus 155 ~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~----~~ 228 (534)
.+.-+...++. ...+.|.+|+.-|..++..- ++.+ ++ ..+|.++.++.++..+||..|+.+|..+-.. ++
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~---LD-RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK---LD-RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH---Hh-hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 45555555553 45678999999999887532 2221 22 5799999999999999999999988887542 22
Q ss_pred hhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcCh----hhHHHHHh------------------------CCC
Q 009471 229 CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSA----EMARAIVG------------------------HGG 279 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~----~~~~~l~~------------------------~g~ 279 (534)
.-..++.+=++|.|-.++.+. ...++..-+..|..|+..- +..+.+.. +..
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 334455555688888888884 4445555555555554311 00011100 111
Q ss_pred h-HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhh----CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471 280 V-RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE----GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (534)
Q Consensus 280 i-~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~----g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (534)
| ...+.+|.++++.++..-+..|.-|+ ..+..+ =+++.|+-.|.+.+. ..|-.=...|.-++.. .
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ksND~iLshLiTfLNDkDw-~LR~aFfdsI~gvsi~---V 648 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKSNDVILSHLITFLNDKDW-RLRGAFFDSIVGVSIF---V 648 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhcccccchHHHHHHHhcCccH-HHHHHHHhhccceEEE---E
Confidence 2 22234555555556655555544333 233332 245666666666543 4444333333333321 0
Q ss_pred HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
-..-+++..+|.|.+-|.| +-+...|+++|..|+.....++..-..++.....+|-.++.-++..++.+|...++.
T Consensus 649 G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 649 GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 0111234557777787877 457889999999999843333333344566677778888999999999999988864
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.82 E-value=0.0016 Score=46.46 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 009471 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL 264 (534)
Q Consensus 210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L 264 (534)
+.+|..|+.+|++++...+....-....+++.|+.+|+++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999887776444445667899999999999999999999999875
No 128
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.81 E-value=0.82 Score=47.57 Aligned_cols=345 Identities=15% Similarity=0.109 Sum_probs=192.6
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc----
Q 009471 157 RELLARLQIGHL---EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS---- 228 (534)
Q Consensus 157 ~~Ll~~L~~~~~---~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~---- 228 (534)
+.++..|...+. ......+.+|..++...+-. ..+.. ..+..+-...+.+ +.+.....+.+|..+.....
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~-~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQIL-ETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHH-HHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 345555544433 45667788888887644322 22211 3444444444432 45666666777777755432
Q ss_pred --hhHHHHhcCCHHHHHHHHccC-----C--HHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHc---------
Q 009471 229 --CENWLVSEGVLPPLIRLVESG-----S--TVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQ--------- 288 (534)
Q Consensus 229 --~~~~l~~~g~i~~Lv~lL~~~-----~--~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~--------- 288 (534)
......+..+++.+.+..-.. + ..+...+...+..+... .+..+.++ ..+..+..
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCC
Confidence 223334445778887766432 2 34555555555555433 33333342 33333332
Q ss_pred -cC------ChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhc
Q 009471 289 -TG------DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE 361 (534)
Q Consensus 289 -~~------~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~ 361 (534)
.. ......-...++..+-..-... .. ...+..++.+..+......+..++.+++.+..-.+... .-.
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~ 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLD 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHH
Confidence 01 1112222334444443322111 11 23677788887655544778888888888886411110 001
Q ss_pred CChHHHHHhh-c--CCchHHHHHHHHHHhhc----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hh-
Q 009471 362 GGIRSLLAYL-D--GPLPQESAVGALRNLVG----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE- 432 (534)
Q Consensus 362 g~l~~L~~~L-~--~~~~~~~a~~aL~~La~----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~- 432 (534)
..+..+..-+ . .+..+..++.++..++. ...+ ....++..|+.++.+ +.+...|+..+.-+..+ ++
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~---~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~ 303 (415)
T PF12460_consen 229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP---LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDV 303 (415)
T ss_pred HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHh
Confidence 1233333333 1 14456666666666654 1111 123357788888866 67788888888888765 32
Q ss_pred ------------HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhH
Q 009471 433 ------------MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTA 500 (534)
Q Consensus 433 ------------~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~ 500 (534)
+++.+.. ..+|.|++..+..+.+.+..-..+|.++..+.+..--.-.-...+|.|++-|+.+ +..+
T Consensus 304 l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v 381 (415)
T PF12460_consen 304 LNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADV 381 (415)
T ss_pred cCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 2233322 3578888888877777888999999999977654332222235678888999776 4468
Q ss_pred HHHHHHHHHhhchhHHHHHHH
Q 009471 501 KKYAVACLASLSPSARKLLER 521 (534)
Q Consensus 501 k~~a~~~L~~L~~~~k~~~~~ 521 (534)
+..+..+|..+...+..+++.
T Consensus 382 ~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 382 LLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHHHHcCHHHHHH
Confidence 999999999998886555443
No 129
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.76 E-value=0.053 Score=59.01 Aligned_cols=260 Identities=15% Similarity=0.162 Sum_probs=155.6
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH-ccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHH
Q 009471 249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL 327 (534)
Q Consensus 249 ~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~l 327 (534)
..+....++.+++...+........+..+ .+...+..+ .+..+.++..|+++++..+... ....+ ..+++..+.++
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl~~~-~p~ild~L~ql 538 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVK-VLLSL-QPMILDGLLQL 538 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCce-ecccc-chHHHHHHHHH
Confidence 35555557777777665542222111110 012223332 3456677888888888877432 21111 25677888888
Q ss_pred hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh----cCCchHHHHHHHHHHhhcCccHHHHHhcCcHH
Q 009471 328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAVGALRNLVGSVSQEVLISLGFFP 403 (534)
Q Consensus 328 l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L----~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~ 403 (534)
.....+ ++-....++|...+..++... ...+....|..+.+. ++|.+...+-.++-.++.......-.....+|
T Consensus 539 as~~s~-evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iP 616 (1005)
T KOG2274|consen 539 ASKSSD-EVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIP 616 (1005)
T ss_pred cccccH-HHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 876665 788888999999998776543 233445556555543 33655555656666665521112222345799
Q ss_pred HHHHHHhcCC----HHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHh-hcCCChHHHHHHHHHHHHhcCCCcchH
Q 009471 404 RLVHVLKAGS----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKL-LEAKPNSVREVAAQAISSLVTLPQNCR 476 (534)
Q Consensus 404 ~Lv~lL~~~~----~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~l-l~~~~~~v~~~A~~aL~~L~~~~~~~~ 476 (534)
.++..++.+. +.....|+..|..+.++ +..-+.+... +.|.+.+. +++++.++-..+.++|..+.......-
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~ 695 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTLEQL 695 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHH
Confidence 9999997765 67888888888888765 3444444332 46666666 568888899999999999886543322
Q ss_pred HHHhhCCC------HHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 477 EVKRDDKS------VPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 477 ~~~~~~~~------v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.-..++.+ +..+-+||++..++..-.+.-..+..|..+
T Consensus 696 ~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~ 739 (1005)
T KOG2274|consen 696 LTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITH 739 (1005)
T ss_pred HhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHH
Confidence 22222222 234558898875444444555555555444
No 130
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.75 E-value=0.29 Score=53.99 Aligned_cols=351 Identities=15% Similarity=0.113 Sum_probs=190.3
Q ss_pred hhhhchHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471 150 ATTHGNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 150 ~~~~~~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (534)
.++...++.++..+- ..++.++..++..+.+++..-+. .....+.++.+.++..+....+|+.|...+..+...-.
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 456666777777664 45677788888888888764442 45566889999999988889999999988888876432
Q ss_pred hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~ 308 (534)
.-. =....+.+.++...++++..++.........+...-+. ......-++....++++...+.+..++.-...++..
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 211 11224588899999999999998888777777543221 111122346666667666666555444433333321
Q ss_pred --chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc-------------------------------------
Q 009471 309 --PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA------------------------------------- 349 (534)
Q Consensus 309 --~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~------------------------------------- 349 (534)
.+....+....+++.+..++.+... .++...+..+.++.-
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~-~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNAL-HVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccc-hHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 1223333344445555555555444 444444444433321
Q ss_pred --CChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009471 350 --SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC 425 (534)
Q Consensus 350 --~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (534)
.++......+....++.+..+-.+ -.++......+..++.... ..+....+-+.+...+.+....+++.|+..+.
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-VEFFDEKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 111111111112222222222222 1234444444444444222 22222223333344444555678888888887
Q ss_pred HhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHH
Q 009471 426 RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAV 505 (534)
Q Consensus 426 ~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~ 505 (534)
.++..-. ........++.+..+...++--.|...+.++..++..-.+ +.+.+ ..++.+.++.... ...+|.+++
T Consensus 544 ~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~-ei~~~--~Llp~~~~l~~D~-vanVR~nva 617 (759)
T KOG0211|consen 544 ALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ-EITCE--DLLPVFLDLVKDP-VANVRINVA 617 (759)
T ss_pred HHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-HHHHH--HHhHHHHHhccCC-chhhhhhHH
Confidence 7773211 1111122366666666555566677777777655422222 22222 4567777766654 335777777
Q ss_pred HHHHhhchh
Q 009471 506 ACLASLSPS 514 (534)
Q Consensus 506 ~~L~~L~~~ 514 (534)
..|..+...
T Consensus 618 k~L~~i~~~ 626 (759)
T KOG0211|consen 618 KHLPKILKL 626 (759)
T ss_pred HHHHHHHhh
Confidence 766655443
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.71 E-value=0.0034 Score=44.69 Aligned_cols=55 Identities=22% Similarity=0.069 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009471 292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347 (534)
Q Consensus 292 ~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~L 347 (534)
|.+|..|+++|.+++........-....+++.|+.++.++++ .|+..|+.+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~-~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD-SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH-HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhcC
Confidence 578999999999988765433333457789999999988887 8999999999875
No 132
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.65 E-value=0.023 Score=49.72 Aligned_cols=137 Identities=13% Similarity=0.165 Sum_probs=101.4
Q ss_pred HHHHHhcCcHHHHHHHHhcCCH------HHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcC--CChHHHHHHHHH
Q 009471 393 QEVLISLGFFPRLVHVLKAGSL------GAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQA 464 (534)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL~~~~~------~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~A~~a 464 (534)
..+++..+++..|+++++++.. .....++.++..|-.+....=...+..++...+.++.. .+..+...++..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 3567788899999999987762 55666777777766542222223344578888888873 368899999999
Q ss_pred HHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh-----HHHHHHHHhhcccccc
Q 009471 465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS-----ARKLLERLERGRLRSF 530 (534)
Q Consensus 465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~-----~k~~~~~l~~~~~~~~ 530 (534)
|-+++..++.....+.++=.++.|+..|+.+ +..++.+++..+-.|-.. .+++.+.+..-.+|..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~~R~~ 153 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADDSKRKEIAETLSQKQIRQV 153 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 9999998888777777778899999999986 557999999888888766 4566666665555544
No 133
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.58 E-value=0.27 Score=45.84 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc-----CChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHH
Q 009471 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIK 326 (534)
Q Consensus 254 ~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ 326 (534)
...|...|..++.+++.+..|.+...--.|-.++.. +..-.|-.+++++..|..++ +.-..+...++||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 456777888899999999999987665555555543 34567889999999999854 67778888999999999
Q ss_pred HhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHH-HH
Q 009471 327 LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFP-RL 405 (534)
Q Consensus 327 ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~-~L 405 (534)
.++.|+. ..+..|..++..|-.++... .. +|.....+ ..+.. ++. .+
T Consensus 176 ime~GSe-lSKtvA~fIlqKIlldD~GL----------~Y-------------iCqt~eRF-------~av~~-~L~kmv 223 (293)
T KOG3036|consen 176 IMESGSE-LSKTVATFILQKILLDDVGL----------YY-------------ICQTAERF-------SAVAL-VLGKMV 223 (293)
T ss_pred HHhcccH-HHHHHHHHHHHHHhhccccH----------HH-------------HHHhHHHH-------HHHHH-HHHHHH
Confidence 9999997 67888888887776543322 11 11111111 11111 223 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009471 406 VHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGE 439 (534)
Q Consensus 406 v~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~ 439 (534)
.++.+.+++.+.+.+.++..+|+.++..+..+..
T Consensus 224 ~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 224 FQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4455677889999999999999999888887743
No 134
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.58 E-value=0.33 Score=43.96 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHH
Q 009471 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIR 244 (534)
Q Consensus 167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~ 244 (534)
++..|..++.++..++..-+. +++ ..++.+...|+++++.+|..|+.+|..|...+. .+.. .+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~-----l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ-----LFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh-----hhHHHHH
Confidence 467888999999999875552 232 568899999999999999999999999987764 2222 3478888
Q ss_pred HHccCCHHHHHHHHHHHHHhhcC
Q 009471 245 LVESGSTVGKEKATISLQRLSMS 267 (534)
Q Consensus 245 lL~~~~~~~~~~A~~~L~~Ls~~ 267 (534)
++.+++++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 135
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.57 E-value=0.014 Score=58.86 Aligned_cols=294 Identities=16% Similarity=0.102 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-----C-chhHHHHhcCCHHH
Q 009471 168 LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-----G-SCENWLVSEGVLPP 241 (534)
Q Consensus 168 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-----~-~~~~~l~~~g~i~~ 241 (534)
..+|.++...|.-++..-.-.+..++ .....+..-+...++.+++.++..+..+... . +..+.-...+.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 46688888888777653221111111 1222233334556799999999998887542 1 11111111221111
Q ss_pred H------HHHH-ccCCHHHHHHHHHHHHHhhcC-----hhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCC
Q 009471 242 L------IRLV-ESGSTVGKEKATISLQRLSMS-----AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV 308 (534)
Q Consensus 242 L------v~lL-~~~~~~~~~~A~~~L~~Ls~~-----~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~ 308 (534)
+ -... ++..+..+..+|.++.++... ++.++... +.+..=|.+ ++.-++..|.+++.-+.-+
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~-----~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH 421 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLC-----ITFLLGCNDSKNRLVKAAASRALGVYVLH 421 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhh-----HHHHhcccchHHHHHHHHHHhhceeEEec
Confidence 1 1111 223445677788888888542 12122211 222222332 2233456666776666666
Q ss_pred chHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC----ChH---HHHHHHhcCChHHHHHhh-----cCCc
Q 009471 309 PEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS----NEN---LRRSVVSEGGIRSLLAYL-----DGPL 375 (534)
Q Consensus 309 ~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~----~~~---~~~~i~~~g~l~~L~~~L-----~~~~ 375 (534)
+..+....- ..+...+...+.+..- ..|+.+.++++||+.. -+. ....+.. -.+..+++.- +++.
T Consensus 422 p~lr~d~~fv~~aa~~il~sl~d~~l-n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dk 499 (728)
T KOG4535|consen 422 PCLRQDVIFVADAANAILMSLEDKSL-NVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDK 499 (728)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhHhH-hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhh
Confidence 655544322 4445555555655454 6899999999999861 111 1111111 1122222221 2267
Q ss_pred hHHHHHHHHHHhhc--C---ccHHHHHhcCcHHHHHHH-HhcCCHHHHHHHHHHHHHhcCChhHH--HHHHhcCchHHHH
Q 009471 376 PQESAVGALRNLVG--S---VSQEVLISLGFFPRLVHV-LKAGSLGAQQAAASALCRVCTSAEMK--KLVGEAGCTPLLI 447 (534)
Q Consensus 376 ~~~~a~~aL~~La~--~---~~~~~l~~~~~i~~Lv~l-L~~~~~~v~~~A~~aL~~la~~~~~~--~~i~~~g~v~~Lv 447 (534)
++.+++++|+|+.. . +........+-+..+..- .-.+...|+-+||.+++||..++... ..=+.....+.|.
T Consensus 500 V~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~ 579 (728)
T KOG4535|consen 500 VKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALT 579 (728)
T ss_pred hhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHH
Confidence 89999999999976 1 111111222222222221 22345689999999999999885442 1112223578888
Q ss_pred Hhhc-CCChHHHHHHHHHHHHhcC
Q 009471 448 KLLE-AKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 448 ~ll~-~~~~~v~~~A~~aL~~L~~ 470 (534)
.++. ..+..+|..|+.+|..-..
T Consensus 580 ~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 580 SLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHhccceEeehhhhhhcCCCC
Confidence 8876 6788999999999876653
No 136
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.50 E-value=0.31 Score=46.00 Aligned_cols=191 Identities=21% Similarity=0.207 Sum_probs=102.6
Q ss_pred CChHHHHHHHcc--CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH
Q 009471 278 GGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355 (534)
Q Consensus 278 g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (534)
..++.|+..+.+ ..|.+|..|..+|.++. . ...++.+-++.+++.. .+++.+..++..+-..+....
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~-~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCK-EVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCcc-ccchHHHHHHHHHHHhhcccc
Confidence 345666666554 34556666666666554 2 2223334444433333 455555555555443111000
Q ss_pred -------HHH-----HhcCChHHHHHhhcC---Cc-hHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHH
Q 009471 356 -------RSV-----VSEGGIRSLLAYLDG---PL-PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQA 419 (534)
Q Consensus 356 -------~~i-----~~~g~l~~L~~~L~~---~~-~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~ 419 (534)
..+ ...+.+..+-..+-+ +. -+..|...|+|+-.. ..+..|.+-+..++.-.|..
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E---------eaI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE---------EAINALIDGLADDSALFRHE 206 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH---------HHHHHHHHhcccchHHHHHH
Confidence 000 011223344443322 11 245566666665432 12455556566667788888
Q ss_pred HHHHHHHhcCChhHHHHHHhcCchHHHHHhhc--CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCc
Q 009471 420 AASALCRVCTSAEMKKLVGEAGCTPLLIKLLE--AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ 497 (534)
Q Consensus 420 A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~--~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~ 497 (534)
++.+++.|-.. -.+|.|.+.|. ..++.+|..|++||..++ ++..++.|.+.+... .
T Consensus 207 vAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa-----------~e~~~~vL~e~~~D~-~ 264 (289)
T KOG0567|consen 207 VAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA-----------DEDCVEVLKEYLGDE-E 264 (289)
T ss_pred HHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc-----------CHHHHHHHHHHcCCc-H
Confidence 88888887532 34677777765 457888888888888884 345566666666654 3
Q ss_pred hhHHHHHHHHHHh
Q 009471 498 NTAKKYAVACLAS 510 (534)
Q Consensus 498 ~~~k~~a~~~L~~ 510 (534)
..+++.+..+|-.
T Consensus 265 ~vv~esc~valdm 277 (289)
T KOG0567|consen 265 RVVRESCEVALDM 277 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 3566666665543
No 137
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.48 E-value=0.083 Score=52.42 Aligned_cols=183 Identities=20% Similarity=0.214 Sum_probs=109.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC--ChHHHHHH
Q 009471 283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS--NENLRRSV 358 (534)
Q Consensus 283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~--~~~~~~~i 358 (534)
.+..+.+.....|..++..+.++....-....+.+ .-++..+.+.++.+.. +-+..|+.++.-++.. .......+
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34445556677888888888877654322222222 3356777788888876 4566677776666653 22223344
Q ss_pred HhcCChHHHHHhhcC----CchHHHHHHHHHHhhc--CccHHHHHh-cCcHHHHHH--HHhc----------CCHHHHHH
Q 009471 359 VSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLIS-LGFFPRLVH--VLKA----------GSLGAQQA 419 (534)
Q Consensus 359 ~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~--~~~~~~l~~-~~~i~~Lv~--lL~~----------~~~~v~~~ 419 (534)
++ ...+.|.+++.+ +..|..|+.+|+-++. ......+.+ ...+..++. ..+. +++.+...
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 43 346778887765 3456677777777766 222222211 122332222 1221 12467777
Q ss_pred HHHHHHHhcCC-hh--HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 420 AASALCRVCTS-AE--MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 420 A~~aL~~la~~-~~--~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
|+.+.+-|... +. ....+ ...+|.|..+|.+.+.++|..|.++|..|.
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 77766666543 32 33333 345999999999999999999999999885
No 138
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.27 Score=46.39 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHh--c
Q 009471 336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK--A 411 (534)
Q Consensus 336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~--~ 411 (534)
-++.+...|+|+-. +.. +..+.+-+.. .-.|..+..+++.|-++ ..++.|.+.|. .
T Consensus 172 ~Ry~amF~LRn~g~--Eea---------I~al~~~l~~~SalfrhEvAfVfGQl~s~---------~ai~~L~k~L~d~~ 231 (289)
T KOG0567|consen 172 ERYRAMFYLRNIGT--EEA---------INALIDGLADDSALFRHEVAFVFGQLQSP---------AAIPSLIKVLLDET 231 (289)
T ss_pred HHHhhhhHhhccCc--HHH---------HHHHHHhcccchHHHHHHHHHHHhhccch---------hhhHHHHHHHHhhh
Confidence 36677777777653 211 3334444433 33577888888887652 35788888775 3
Q ss_pred CCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471 412 GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (534)
Q Consensus 412 ~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L 468 (534)
.++.|+..|+.+|+.++.. .+++.|.+++.++.+-+++.+..+|-.+
T Consensus 232 E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 232 EHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred cchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4689999999999999853 4677888888888888888777776544
No 139
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.40 E-value=0.05 Score=51.41 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=102.1
Q ss_pred HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccC
Q 009471 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESG 249 (534)
Q Consensus 177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~ 249 (534)
+|.+....+|+.+..+++....-.|..+|+..+ ..+|-.++.+++.+...++ .-..+.+.+++|..++.++.+
T Consensus 72 aLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G 151 (262)
T PF04078_consen 72 ALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG 151 (262)
T ss_dssp HHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS
T ss_pred HHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc
Confidence 444444457788899999888777777776643 5788999999999988654 667788899999999999999
Q ss_pred CHHHHHHHHHHHHHhhcChhhHHHHHh--------CCChHHHH-HHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471 250 STVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (534)
Q Consensus 250 ~~~~~~~A~~~L~~Ls~~~~~~~~l~~--------~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (534)
+.-.+..|.-++..+-.++..-..+++ ..++..++ .+...+++...++..++-..|+.++..+..+..
T Consensus 152 selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 152 SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp -HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999998877765544432 11222233 334567888889999999999999988887754
No 140
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.042 Score=59.10 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=147.1
Q ss_pred hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHH-HHccCChHHHHHHHhcCChHHHHHhhcCCc---hHHHHHHHHH
Q 009471 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ-NLTASNENLRRSVVSEGGIRSLLAYLDGPL---PQESAVGALR 385 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~-~La~~~~~~~~~i~~~g~l~~L~~~L~~~~---~~~~a~~aL~ 385 (534)
.-+...+..|+...|..+...... ..+.....+|. .+....... ..+++.+...+++.. ---.++.++.
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e-~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFE-EAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhch-HHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 455566778999999999877776 66777777776 333321111 122334444443321 1246788999
Q ss_pred Hhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChh-HHHHHHh-cCchHHHHHhhcCCChHHHHHH
Q 009471 386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE-MKKLVGE-AGCTPLLIKLLEAKPNSVREVA 461 (534)
Q Consensus 386 ~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~-~~~~i~~-~g~v~~Lv~ll~~~~~~v~~~A 461 (534)
||++ ...++.+...-.++.+-.++-..++..|..++..+.||.-++. +.+.+++ ....+.....+....+....++
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9998 4556678777778888888888899999999999999997754 4455555 3467776666777777777788
Q ss_pred HHHHHHhcCCCcchHH-HHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHHhhcc
Q 009471 462 AQAISSLVTLPQNCRE-VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERGR 526 (534)
Q Consensus 462 ~~aL~~L~~~~~~~~~-~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l~~~~ 526 (534)
+.++..++....|+.. ..........++.++.+. +..++...+....|+....+++.+.+...-
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~ 712 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETE 712 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccch
Confidence 8888878777777665 444445667888888776 447889999999999988888888776543
No 141
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.31 E-value=0.26 Score=55.56 Aligned_cols=294 Identities=14% Similarity=0.106 Sum_probs=164.3
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-----hhhH
Q 009471 198 IAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-----AEMA 271 (534)
Q Consensus 198 v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-----~~~~ 271 (534)
+..+...+++= ..+.+..|+..|..++..-.....+ ..++|.++.++.+....+|..|..+|..+-.. +.+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 55555555542 3678899999999998754321221 24699999999999999999999998887432 1222
Q ss_pred HHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471 272 RAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~ 350 (534)
. +.-.=.+|.|-.++.+ ....+|..-+..|..|+.. ...+.+.+--.....++.+.+. + ...+ ...
T Consensus 502 n-iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~ns-e-------t~~~-~~~ 568 (1431)
T KOG1240|consen 502 N-IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDPNS-E-------TAPE-QNY 568 (1431)
T ss_pred h-hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCccc-c-------cccc-ccc
Confidence 2 2223345677677766 3445565556666666542 1112221111111112222222 1 0000 000
Q ss_pred ChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 351 NENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 351 ~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
+.. .+. ...++-+....++.+ +-++..-+..|.-||.--.++ =.+.-+++.|+.+|++.+..++..-...|.-++
T Consensus 569 ~~~-~~~-L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~-ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs 645 (1431)
T KOG1240|consen 569 NTE-LQA-LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE-KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS 645 (1431)
T ss_pred chH-HHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc-ccccchHHHHHHHhcCccHHHHHHHHhhccceE
Confidence 111 111 112222334445544 345666666677777510000 012335888999999998887766665555444
Q ss_pred CChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHH
Q 009471 429 TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL 508 (534)
Q Consensus 429 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L 508 (534)
..-.-+ -.++..+|.|.+-+.+..+-|...|+++|..|+...--++..+. +.+.....+|-. |+.=+|..++..+
T Consensus 646 i~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~h-PN~WIR~~~~~iI 720 (1431)
T KOG1240|consen 646 IFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCH-PNLWIRRAVLGII 720 (1431)
T ss_pred EEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeC-chHHHHHHHHHHH
Confidence 321111 01234588888889988899999999999999855544444443 233333344433 2445888888888
Q ss_pred Hhhchh
Q 009471 509 ASLSPS 514 (534)
Q Consensus 509 ~~L~~~ 514 (534)
...+..
T Consensus 721 ~~~~~~ 726 (1431)
T KOG1240|consen 721 AAIARQ 726 (1431)
T ss_pred HHHHhh
Confidence 887765
No 142
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.29 E-value=0.023 Score=45.87 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhh-cCCChhHHHHHHHHHHHHccCChHHHHHHHh
Q 009471 295 QAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRRSVVS 360 (534)
Q Consensus 295 ~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~ 360 (534)
+.....+|.||+. ++.++..+.+.|+++.++.... +...+-+++.|+.++.|++.+++.+++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5667889999998 4589999999999999998874 3333478999999999999999999876654
No 143
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.18 E-value=0.47 Score=48.45 Aligned_cols=125 Identities=9% Similarity=0.119 Sum_probs=92.4
Q ss_pred cCCHHHHHHHHccC---CHHHHHHHHHHHHHhhcChhhHH-HHHhCCChHHHHHHHc-cC---ChHHHHHHHHHHHHccC
Q 009471 236 EGVLPPLIRLVESG---STVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQ-TG---DSVSQAAAACTLKNISA 307 (534)
Q Consensus 236 ~g~i~~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~~~~~-~l~~~g~i~~Lv~ll~-~~---~~~~~~~a~~aL~nLa~ 307 (534)
...+..|..+++.. .+.+-..|+.++..+-.+++... .+.+.|.++.+++.+. .+ +.++....-.+|..+|-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 45566677777764 55677788899999888877655 5667899999998887 43 55666777788888999
Q ss_pred CchHHHHHHhhCcHHHHHHHhhcCCCh------hHHHHHHHHHHHHccCChHHHHHHHh
Q 009471 308 VPEVRQMLAEEGIVSVMIKLLDCGILL------GSKEYAAECLQNLTASNENLRRSVVS 360 (534)
Q Consensus 308 ~~~~~~~i~e~g~i~~L~~ll~~~~~~------~v~~~a~~~L~~La~~~~~~~~~i~~ 360 (534)
+....+.+.+.+.++.+++++.+.... +.-...-..+-.|..+.+..|..+++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999999765421 22333445566677788888776654
No 144
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.18 E-value=0.25 Score=54.05 Aligned_cols=169 Identities=12% Similarity=0.137 Sum_probs=125.3
Q ss_pred HhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHH
Q 009471 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPL 242 (534)
Q Consensus 163 L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L 242 (534)
+.+++...|.+|++.+..-....+.. . -..+.+++...+.|.+++...=.-|...+...+....+ .+..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm-s-----sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM-S-----SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh-H-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 56667788889998766654433321 1 22455666666778899988888888888877633332 37778
Q ss_pred HHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHH
Q 009471 243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVS 322 (534)
Q Consensus 243 v~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~ 322 (534)
.+=++++++.+|..|.+++..+-.. +-...+ ++++.+++.++++.+|..|+-++.++-..+ .....+.|.+.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~-el~~~~-----~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~ 169 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVK-ELLGNI-----IDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLID 169 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChH-HHHHHH-----HHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHH
Confidence 8888899999999999999887542 222222 488999999999999999999999987532 23445678888
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471 323 VMIKLLDCGILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 323 ~L~~ll~~~~~~~v~~~a~~~L~~La~~ 350 (534)
.+..++.+.++ .+..+|+.+|..+...
T Consensus 170 ~l~~l~~D~dP-~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELVADSDP-IVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhhCCCc-hHHHHHHHHHHHhchh
Confidence 88888888887 8999999999998763
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.16 E-value=0.088 Score=46.09 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=92.4
Q ss_pred HHHHHhCCChHHHHHHHccCCh------HHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCC-ChhHHHHHHHH
Q 009471 271 ARAIVGHGGVRPLIEICQTGDS------VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI-LLGSKEYAAEC 343 (534)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~~~~------~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~-~~~v~~~a~~~ 343 (534)
+..|...||+..|++++.+++. .....++.++..|....-..=...+...|..++..+.... +..+...|+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4568889999999999998763 5667888888888775433334455667778888886443 33789999999
Q ss_pred HHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471 344 LQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (534)
Q Consensus 344 L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~ 389 (534)
|-++...++.....+.++=.++.|+..|++ ++++..++..+-.|-.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999888878888888889999999975 5678888887777765
No 146
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.94 Score=47.30 Aligned_cols=250 Identities=16% Similarity=0.126 Sum_probs=119.2
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh--------HHHHh-
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE--------NWLVS- 235 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~--------~~l~~- 235 (534)
+.-.-+..++++.+..++.++-. ..+++ ..|..|-.+|+++....|-.|+++|..|+...+.+ +.++.
T Consensus 275 ~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd 351 (898)
T COG5240 275 DKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISD 351 (898)
T ss_pred CcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhc
Confidence 33456688888888888765411 12222 45777888889999999999999999999865421 11111
Q ss_pred cC---CHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc--
Q 009471 236 EG---VLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-- 309 (534)
Q Consensus 236 ~g---~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-- 309 (534)
.+ ..-.+..+|+.+..+....-...+-++-.+ +++-.. -+|.++-.++- .-|.-+..-+..|.+.-.++
T Consensus 352 ~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKi----I~ida~rsLsl-~Fp~k~~s~l~FL~~~L~~eGg 426 (898)
T COG5240 352 ENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKI----IAIDALRSLSL-LFPSKKLSYLDFLGSSLLQEGG 426 (898)
T ss_pred ccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceE----EeHHHHHHHHh-hCcHHHHHHHHHHHHHHHhccc
Confidence 11 112233344444333222222222221111 000000 00111111111 01112222222222221111
Q ss_pred -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHH--H----hc--------CChHHHHH--hhc
Q 009471 310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV--V----SE--------GGIRSLLA--YLD 372 (534)
Q Consensus 310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i--~----~~--------g~l~~L~~--~L~ 372 (534)
+.++.+ +..+.+.++..+ +.++.|++.|+..-.+.+..+-.+ . ++ ..+..+.+ +|+
T Consensus 427 ~eFK~~~-----Vdaisd~~~~~p--~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE 499 (898)
T COG5240 427 LEFKKYM-----VDAISDAMENDP--DSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE 499 (898)
T ss_pred chHHHHH-----HHHHHHHHhhCc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh
Confidence 233332 223333333222 344444444444433222211100 0 11 11333333 245
Q ss_pred CCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 373 GPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 373 ~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
+.-+|..|+.+|..++.+.+ +.+....+...|-+.+++.+.+++..|...+.++-..
T Consensus 500 N~ivRsaAv~aLskf~ln~~-d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 500 NNIVRSAAVQALSKFALNIS-DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred hhHHHHHHHHHHHHhccCcc-ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 66788999999988886311 1122233456677788999999999999999998643
No 147
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=0.1 Score=56.59 Aligned_cols=343 Identities=13% Similarity=0.128 Sum_probs=178.8
Q ss_pred CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH------HHHhcCCHH
Q 009471 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN------WLVSEGVLP 240 (534)
Q Consensus 167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~------~l~~~g~i~ 240 (534)
+....-++++.+..|+.++ +....+++.|||..|+..=.-+ +.-.-.-.+|..++.....-+ ..+-..++.
T Consensus 366 d~~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~ 442 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVK 442 (1516)
T ss_pred cccccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHH
Confidence 3333456777777777654 4556788889998887653221 111122244555554443211 222335666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC-------------------ChHHHHHHHHH
Q 009471 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG-------------------DSVSQAAAACT 301 (534)
Q Consensus 241 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-------------------~~~~~~~a~~a 301 (534)
.-+.+|+......+..++-.+..-......-..|-.+.+++.|+.++++- +...-.+.|.+
T Consensus 443 ~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~a 522 (1516)
T KOG1832|consen 443 LAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFA 522 (1516)
T ss_pred HHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHH
Confidence 67778877665555555443333222122233444577788888877641 11223466777
Q ss_pred HHHccC------CchHHHHHHhhCcHHHHHHHhhcCCCh-----hHHHHHHHHHHHHccCCh-------HHHHHHHhcCC
Q 009471 302 LKNISA------VPEVRQMLAEEGIVSVMIKLLDCGILL-----GSKEYAAECLQNLTASNE-------NLRRSVVSEGG 363 (534)
Q Consensus 302 L~nLa~------~~~~~~~i~e~g~i~~L~~ll~~~~~~-----~v~~~a~~~L~~La~~~~-------~~~~~i~~~g~ 363 (534)
|+.--. .+.+++.-+..+.....++-+..+..+ ...+..++-+..+....+ .-.+-+.+.++
T Consensus 523 lR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~ 602 (1516)
T KOG1832|consen 523 LRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSG 602 (1516)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHH
Confidence 765432 223344444555555555544333211 222333222222222111 11133456778
Q ss_pred hHHHHHhhcCC----------chHHHHHHHHHHhhc-CccHHHHHh--------cCcHHHHHHHHh----cCCHHHHHHH
Q 009471 364 IRSLLAYLDGP----------LPQESAVGALRNLVG-SVSQEVLIS--------LGFFPRLVHVLK----AGSLGAQQAA 420 (534)
Q Consensus 364 l~~L~~~L~~~----------~~~~~a~~aL~~La~-~~~~~~l~~--------~~~i~~Lv~lL~----~~~~~v~~~A 420 (534)
+..++++..-+ +....|+++|.-+.. +..+..+.. ..++..++..-. -.+|++++.|
T Consensus 603 v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~A 682 (1516)
T KOG1832|consen 603 VVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPA 682 (1516)
T ss_pred HHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHH
Confidence 88888876431 233445555554444 555444432 123444443332 2368999999
Q ss_pred HHHHHHhcCC-hhHHHHHHhc-C---chHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCC
Q 009471 421 ASALCRVCTS-AEMKKLVGEA-G---CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS 495 (534)
Q Consensus 421 ~~aL~~la~~-~~~~~~i~~~-g---~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~ 495 (534)
+.+|-|+.+. ++++...+.. | +-+...---..++. .....|..+ ...++..+++..|+.||+-.
T Consensus 683 L~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~----~le~~l~~m-------w~~Vr~ndGIkiLl~Ll~~k 751 (1516)
T KOG1832|consen 683 LNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSA----KLEQVLRQM-------WEAVRGNDGIKILLKLLQYK 751 (1516)
T ss_pred HhhhheeecCCCCcchhhhhhccccCCCccccccCCCchH----HHHHHHHHH-------HHHHhcCccHHHHHHHHhcc
Confidence 9999999887 4666654221 1 11111000011111 112233333 34566778999999999854
Q ss_pred -C---chhHHHHHHHHHHhhchh--HHHHHHHHh
Q 009471 496 -P---QNTAKKYAVACLASLSPS--ARKLLERLE 523 (534)
Q Consensus 496 -~---~~~~k~~a~~~L~~L~~~--~k~~~~~l~ 523 (534)
| ...++..|..+|.-|+.+ .+.++.||.
T Consensus 752 ~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 752 NPPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred CCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 2 234899999999999988 445555443
No 148
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.04 E-value=0.034 Score=44.73 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChH
Q 009471 214 EKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV 293 (534)
Q Consensus 214 ~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~ 293 (534)
..++.+|...+..-+..-.-.-..++++++..+.+.+..+|+.|+++|.+++..-...-...-......|.+++.+.++.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 33444555554432211111223469999999999999999999999999986432211111145568888889998988
Q ss_pred HHHHHHHHHH
Q 009471 294 SQAAAACTLK 303 (534)
Q Consensus 294 ~~~~a~~aL~ 303 (534)
+|..| ..|-
T Consensus 84 Vr~~a-~~Ld 92 (97)
T PF12755_consen 84 VRSAA-ELLD 92 (97)
T ss_pred HHHHH-HHHH
Confidence 88655 4443
No 149
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.04 E-value=1.6 Score=48.73 Aligned_cols=236 Identities=15% Similarity=0.182 Sum_probs=141.0
Q ss_pred HhcCCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHc----cCC----HHHHHHHH
Q 009471 192 VMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE----SGS----TVGKEKAT 258 (534)
Q Consensus 192 i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~----~~~----~~~~~~A~ 258 (534)
+.+.||+..++.++.+- ..+.-...+..|...+.-..+|+.+.+.|+++.|+..+. ... +.+.+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 34569999999998762 345666777888888888889999999999999999885 223 55666666
Q ss_pred HHHHHhhcChhh--H---HHHHhCCC--------hHHHHHHHcc----CChHHHHHHHHHHHHccCCchHH-HHHHhhCc
Q 009471 259 ISLQRLSMSAEM--A---RAIVGHGG--------VRPLIEICQT----GDSVSQAAAACTLKNISAVPEVR-QMLAEEGI 320 (534)
Q Consensus 259 ~~L~~Ls~~~~~--~---~~l~~~g~--------i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~~~~~~-~~i~e~g~ 320 (534)
.++..+...... . .......+ +..|++.+.+ .++.+....+++|-+|+.+.+.. +.+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 666655432111 1 11112222 5566666654 36788889999999999976433 333331
Q ss_pred HHHHHHHhhc--CCChhHHHHHHHHHHHHccC------ChHHHHHHHhcCChHHHHHhhcC--Cc---------------
Q 009471 321 VSVMIKLLDC--GILLGSKEYAAECLQNLTAS------NENLRRSVVSEGGIRSLLAYLDG--PL--------------- 375 (534)
Q Consensus 321 i~~L~~ll~~--~~~~~v~~~a~~~L~~La~~------~~~~~~~i~~~g~l~~L~~~L~~--~~--------------- 375 (534)
+...+++=+- ....+- ..-+.++..++.+ ....++.+++.|.+...+++|.. |.
T Consensus 271 F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 2222222111 111011 2336667776652 24688999999999999998843 32
Q ss_pred -hHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCh
Q 009471 376 -PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSA 431 (534)
Q Consensus 376 -~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~~ 431 (534)
....++..|.-|+. ....+.++..+++ ++++-|..- +..+=..|=..|-.++.++
T Consensus 350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 13567888888887 3334445556666 555555322 2233333333444444443
No 150
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.95 E-value=0.057 Score=49.33 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=84.0
Q ss_pred cCCHHHHHHHHHHHHHhhcChhhHHHHHhC--C--------------ChHHHHHHHcc------CChHHHHHHHHHHHHc
Q 009471 248 SGSTVGKEKATISLQRLSMSAEMARAIVGH--G--------------GVRPLIEICQT------GDSVSQAAAACTLKNI 305 (534)
Q Consensus 248 ~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~--g--------------~i~~Lv~ll~~------~~~~~~~~a~~aL~nL 305 (534)
+........++-.|.||+..++.+..+.+. . .+..|+..+.. ....-..+.+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 334446677889999999988887765542 2 35666766554 2233457889999999
Q ss_pred cCCchHHHHHHh--hCc--HHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhc---CChHHHHHhh
Q 009471 306 SAVPEVRQMLAE--EGI--VSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE---GGIRSLLAYL 371 (534)
Q Consensus 306 a~~~~~~~~i~e--~g~--i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~---g~l~~L~~~L 371 (534)
+..++.|+.+.+ .+. +..|+..+++.+. .-|.-++.+|.|+|.+.+.. ..++.. +.++.|+--|
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~-iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV-IRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence 999999999987 344 6777777777754 55778999999999865544 344432 3444444433
No 151
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.94 E-value=0.092 Score=46.51 Aligned_cols=143 Identities=22% Similarity=0.247 Sum_probs=93.2
Q ss_pred HHHHHHHhhc-CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc--CccH-H
Q 009471 321 VSVMIKLLDC-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQ-E 394 (534)
Q Consensus 321 i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~--~~~~-~ 394 (534)
+..++..+.. ..+.+++..+.-++..+- +..++. +.+-.-+.+-..+.. .+....++.++..+-. ++.. .
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3445555543 222378998888888873 222222 221112222223333 4567777777777765 3333 3
Q ss_pred HHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChH-HHHHHHHHHHHh
Q 009471 395 VLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNS-VREVAAQAISSL 468 (534)
Q Consensus 395 ~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~-v~~~A~~aL~~L 468 (534)
.+...|+++.++.++. ..+..++..++.+|..=|.+...|..+.+. +++.|.++++ +++.. ++..|+-+|+.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 4457899999999998 778899999999888877777777777665 5999999995 55565 788988888753
No 152
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.92 E-value=0.062 Score=43.24 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCC
Q 009471 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS 250 (534)
Q Consensus 171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~ 250 (534)
|..++..|...+..-+.......+ ..+++++..+.+++..+|..|+++|.+++......-...-..+.+.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 344555565554433333333332 6799999999999999999999999999865432111122457888899999999
Q ss_pred HHHHHHHHHHHHHh
Q 009471 251 TVGKEKATISLQRL 264 (534)
Q Consensus 251 ~~~~~~A~~~L~~L 264 (534)
+.++..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 8887655 555554
No 153
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.96 Score=48.64 Aligned_cols=161 Identities=19% Similarity=0.113 Sum_probs=95.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh-hcC--CchHHHHHHHHHHhhcCccHHHHHh
Q 009471 322 SVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVGSVSQEVLIS 398 (534)
Q Consensus 322 ~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~-L~~--~~~~~~a~~aL~~La~~~~~~~l~~ 398 (534)
+.+-+++.+.++ -.|......+.--=.+.. +.+++..|+.+ ..+ ++++..|+-+|+-++.. +
T Consensus 522 ~lI~el~~dkdp-ilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~-------d 586 (929)
T KOG2062|consen 522 PLIKELLRDKDP-ILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-------D 586 (929)
T ss_pred HHHHHHhcCCch-hhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEec-------C
Confidence 334445555554 456555444332111111 12446777776 344 78999999999999873 1
Q ss_pred cCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-CcchH
Q 009471 399 LGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCR 476 (534)
Q Consensus 399 ~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~ 476 (534)
..-.+..+.+| .+.++.|+.-|+.+|+-.|.....+.. +..|-.+.+++..-||.-|+.++.-+... .+...
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~ 660 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC 660 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC
Confidence 22457777777 467899999999999988866444443 34444555677777999999999887732 22111
Q ss_pred HHHhhCCCHHHHHhhcCCCCchh-HHHHHH
Q 009471 477 EVKRDDKSVPNLVQLLDPSPQNT-AKKYAV 505 (534)
Q Consensus 477 ~~~~~~~~v~~Lv~lL~~~~~~~-~k~~a~ 505 (534)
.-+. +....+.+.+....+.. +|..|+
T Consensus 661 pkv~--~frk~l~kvI~dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 661 PKVN--GFRKQLEKVINDKHEDGMAKFGAI 688 (929)
T ss_pred chHH--HHHHHHHHHhhhhhhHHHHHHHHH
Confidence 1111 23445666665553333 444443
No 154
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.79 E-value=0.24 Score=49.46 Aligned_cols=235 Identities=15% Similarity=0.177 Sum_probs=150.4
Q ss_pred HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hH-----HHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHH
Q 009471 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV-----RQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECL 344 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~-----~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L 344 (534)
.+...+.+..|+..+..-+-+.+..++.+..++-... +. ...+.+ ..++..|+.--+ .+ ++-..+-..|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~-dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NP-DIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--ST-TTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--Cc-cccchHHHHH
Confidence 4555677888999999889999999999998887743 22 222222 223333332222 33 6777888888
Q ss_pred HHHccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhc-C-ccHHHHHh---cCcHHHHHHHHhcCCHHHH
Q 009471 345 QNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVG-S-VSQEVLIS---LGFFPRLVHVLKAGSLGAQ 417 (534)
Q Consensus 345 ~~La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~-~-~~~~~l~~---~~~i~~Lv~lL~~~~~~v~ 417 (534)
+.+.. .+...+.+.....+..+.++++.+ ++...|..++..+-. . ......+. ..++.....+|.+++.-++
T Consensus 148 Rec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 88887 566666788888888899988764 456667777777554 2 22233333 3457788889999999999
Q ss_pred HHHHHHHHHhcCChhHH----HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh-CCCHHHHHhhc
Q 009471 418 QAAASALCRVCTSAEMK----KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD-DKSVPNLVQLL 492 (534)
Q Consensus 418 ~~A~~aL~~la~~~~~~----~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~-~~~v~~Lv~lL 492 (534)
+.++..|+.+-.++.+. +++.+..-+..++.++.+++..+|..|-.+.-.++.+|...+.+..- ..+=..|+..|
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl 306 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL 306 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999998764443 44445567899999999999999999999999888776544433220 02334555555
Q ss_pred CC----C-Cc---hhHHHHHHHHHHhh
Q 009471 493 DP----S-PQ---NTAKKYAVACLASL 511 (534)
Q Consensus 493 ~~----~-~~---~~~k~~a~~~L~~L 511 (534)
.. . ++ .+.|.+-+.-+..|
T Consensus 307 ~~f~~~~~~D~qf~~EK~~li~~i~~L 333 (335)
T PF08569_consen 307 KDFHTDRTDDEQFEDEKAYLIKQIESL 333 (335)
T ss_dssp HTTTTT--S-CHHHHHHHHHHHHHHT-
T ss_pred HhCCCCCCccccHHHHHHHHHHHHHhC
Confidence 32 2 11 13566666655544
No 155
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.69 E-value=0.52 Score=44.71 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHh-cCChHHHHHhh-------cCCc-------hHHHHHHHHHHhhc-CccHHHHHh
Q 009471 335 GSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYL-------DGPL-------PQESAVGALRNLVG-SVSQEVLIS 398 (534)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~~L-------~~~~-------~~~~a~~aL~~La~-~~~~~~l~~ 398 (534)
+.++.|+.-|..--...++..-.+.+ .|.+..|++=+ ..|. -..+|+..+..++. ++.+..++.
T Consensus 10 ~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~ 89 (262)
T PF04078_consen 10 ETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLK 89 (262)
T ss_dssp HHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHH
T ss_pred chHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 56777777766665555555544553 45566665532 2222 13578888889998 888999999
Q ss_pred cCcHHHHHHHHhcCC-----HHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 399 LGFFPRLVHVLKAGS-----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 399 ~~~i~~Lv~lL~~~~-----~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
..+.-.|..+|+..+ ..++-.+.++++.+.+. ++....+.+.+.+|...+.++.+++-.+..|..++..+..+
T Consensus 90 a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 90 AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD 169 (262)
T ss_dssp TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS
T ss_pred cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 988777777776543 47888999999999974 78888999999999999999999999999999999988876
Q ss_pred CcchH-------HHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 472 PQNCR-------EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 472 ~~~~~-------~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
..+.. .|..=...+..++.-+..+++...-++.+.|-..|+.+
T Consensus 170 d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 170 DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 54443 33332234555555454455556888999999999988
No 156
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.62 E-value=0.95 Score=46.27 Aligned_cols=130 Identities=20% Similarity=0.235 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCh---HhHHHHhcCCcHHHHHHHhcCCC-------HHHHHHHHHHHHHhhcC
Q 009471 157 RELLARLQIGHLEAKHKALDSLVEAMKEDE---KNVLAVMGRSNIAALVQLLTATS-------PRIREKTVTVICSLAES 226 (534)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~---~~~~~i~~~g~v~~Lv~lL~~~~-------~~v~~~A~~~L~~La~~ 226 (534)
.++...+...+.+.|..|+--...+.+.++ .+++.+.+.-|.+.+=+++.+.+ .-.+..++.+|.-+|..
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 346666677778888888888888887655 45667788778888888887632 33467778889999988
Q ss_pred Cc--hhHHHHhcCCHHHHHHHHccC-CHH------HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc
Q 009471 227 GS--CENWLVSEGVLPPLIRLVESG-STV------GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ 288 (534)
Q Consensus 227 ~~--~~~~l~~~g~i~~Lv~lL~~~-~~~------~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~ 288 (534)
++ ....+++ .||.|..++..+ +++ +.+.+..+|..++..+...+.+...|+++.+..+-.
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 87 4444443 489999999764 333 677889999999999888999999999999986643
No 157
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.58 E-value=0.68 Score=49.11 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHH
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLI 243 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv 243 (534)
.|+...|.-|+.-+....+.-|+.. +.++..++.|+.+.+..||..|+..|..+|.+.+ ....+ ...|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence 4788889999999999988877553 3568999999999999999999999999999753 44444 88999
Q ss_pred HHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc---cCChHHHHHHHHHHH
Q 009471 244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ---TGDSVSQAAAACTLK 303 (534)
Q Consensus 244 ~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~ 303 (534)
++|.++++.-...+-.+|..|-..+ .+..+ ..+...+. .++..+|..+...|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d-~k~tL------~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQD-PKGTL------TGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH--HHHHH------HHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcC-cHHHH------HHHHHHHHhcccCchHHHHHHHHHHH
Confidence 9999988877777777777765422 22222 44444444 567788888877664
No 158
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.56 E-value=0.042 Score=45.61 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=60.7
Q ss_pred hhchHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471 152 THGNTRELLARL-QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE 225 (534)
Q Consensus 152 ~~~~i~~Ll~~L-~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (534)
....++.|+..| .+.|+....-||.-|..++..-|..+..+-+.|+-..+.+++.++|++|+..|+.++..+-.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 345688889988 45577778889999999999888887777777889999999999999999999999987743
No 159
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.56 E-value=1.4 Score=43.82 Aligned_cols=191 Identities=17% Similarity=0.223 Sum_probs=117.2
Q ss_pred hhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh---cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471 150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM---GRSNIAALVQLLTATSPRIREKTVTVICSLAES 226 (534)
Q Consensus 150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~---~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~ 226 (534)
+.....+...+..+.......|..++..+.+++....- ..++ ....++.+.+.++.+..+-+..|++++..++-.
T Consensus 39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALT 116 (309)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Confidence 33444477778888888899999999999999864332 2222 224577888888888877778888888888654
Q ss_pred ---CchhHHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhhc---C-hhhHHHHHhCCChHHH--HHHHc-------
Q 009471 227 ---GSCENWLVSEGVLPPLIRLVESGS--TVGKEKATISLQRLSM---S-AEMARAIVGHGGVRPL--IEICQ------- 288 (534)
Q Consensus 227 ---~~~~~~l~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~~Ls~---~-~~~~~~l~~~g~i~~L--v~ll~------- 288 (534)
.+....+++ ...|+|.+++.+++ ...+..++.+|.-++. . .+...... ..+..+ ....+
T Consensus 117 lg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~ 193 (309)
T PF05004_consen 117 LGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPV 193 (309)
T ss_pred cCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCccc
Confidence 122233332 46788888888764 4455566666665542 2 22222110 011211 11111
Q ss_pred ---cCChHHHHHHHHHHHHccC-Cch--HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471 289 ---TGDSVSQAAAACTLKNISA-VPE--VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (534)
Q Consensus 289 ---~~~~~~~~~a~~aL~nLa~-~~~--~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La 348 (534)
.+++.+...|+.+..-|.. .+. .. ... ...++.|..+|.+.+. ++|..|-.+|.-|-
T Consensus 194 ~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~d~-~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 194 VAAEDDAALVAAALSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSDDV-DVRIAAGEAIALLY 256 (309)
T ss_pred ccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHH
Confidence 1235677777666655554 232 22 222 4569999999998886 89999988887764
No 160
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.52 E-value=0.93 Score=44.85 Aligned_cols=170 Identities=13% Similarity=0.114 Sum_probs=110.9
Q ss_pred CcHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh--hHH
Q 009471 196 SNIAALV-QLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE--MAR 272 (534)
Q Consensus 196 g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~~~ 272 (534)
+.+..|+ ..++++++.+|+.|+.+|+..+--+. .+. ...++.+...++.++..++..|..++..+..... ...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4455555 57788899999999999999988664 111 1226778888877899999999999988854321 111
Q ss_pred H-------HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCC---ChhHHHHHHH
Q 009471 273 A-------IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI---LLGSKEYAAE 342 (534)
Q Consensus 273 ~-------l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~---~~~v~~~a~~ 342 (534)
. ......+..+.+.+.+.+++++..++..+..|--...... ...++..|+-+-.++. ...++..-..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 1 1123446778888888999999999999998776432222 1334444444433222 1245555566
Q ss_pred HHHHHccCChHHHHHHHhcCChHHHHHhhcC
Q 009471 343 CLQNLTASNENLRRSVVSEGGIRSLLAYLDG 373 (534)
Q Consensus 343 ~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~ 373 (534)
.+-..+..++.++ ..+.+..++.+..+.+.
T Consensus 179 Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQ-ERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHH-HHHHHHHHHHHHHHHhC
Confidence 6777777666655 45556667777666644
No 161
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.52 E-value=0.68 Score=47.22 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=112.3
Q ss_pred chHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcChHhH-HHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchh
Q 009471 154 GNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNV-LAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCE 230 (534)
Q Consensus 154 ~~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~~~~~~~-~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~ 230 (534)
.+|.+++..+... ..+.+..|+..|..+..++...+ ....+ ..+..+++.|++ .+...+..|+++|..++.+.+.+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 3566666666544 45668888888999887763221 11111 346678888888 67889999999999999887633
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHH-HHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471 231 NWLVSEGVLPPLIRLVESGSTVGKEKATIS-LQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (534)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~-L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (534)
-.=-.+-++..++..-.+..+.+...|... +.-++.+.+.... ..+..++...|...-..+...+..+...-
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I-------~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI-------VNISPLILTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH-------HHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence 211122245555555556555555555544 4455554443322 22334444445554455555666555421
Q ss_pred --hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 310 --EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 310 --~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
+--..++ ..+.|++++-..+... .+|..|+.||..+..
T Consensus 438 ~~EeL~~ll-~diaP~~iqay~S~SS-~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 438 SAEELLNLL-PDIAPCVIQAYDSTSS-TVRKTAVFCLVAMVN 477 (516)
T ss_pred CHHHHHHhh-hhhhhHHHHHhcCchH-HhhhhHHHhHHHHHH
Confidence 1111111 4578888888887776 899999999988774
No 162
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.51 E-value=0.087 Score=42.53 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCc-hhHHHHh
Q 009471 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGS-CENWLVS 235 (534)
Q Consensus 171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~-~~~~l~~ 235 (534)
|...+..+.+++..++.+...+.+.||++.++....- .+|.+++.|+.++.+|+...+ ++..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5567788999999999999999999999999987644 469999999999999999875 6666544
No 163
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.50 E-value=0.25 Score=45.34 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHH
Q 009471 170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGS--CENWLVSEGVLPPL 242 (534)
Q Consensus 170 ~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~L 242 (534)
.|..-+-.|.+.....|+.+..+++...--.+-..|... ...+|..++.+++.|..+++ ....+....++|.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 344444455555556777877777765533344444332 26789999999999998875 56667788999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh--------CCChHHHHH-HHccCChHHHHHHHHHHHHccCCchHHH
Q 009471 243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLIE-ICQTGDSVSQAAAACTLKNISAVPEVRQ 313 (534)
Q Consensus 243 v~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--------~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (534)
+++++.++.-.+..|+.++..+-.++..-+.+++ ...+..++. +...+......++.++-..|+..++.|.
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence 9999999999999999999998887776554443 111222232 2334566777889999999999988887
Q ss_pred HHHh
Q 009471 314 MLAE 317 (534)
Q Consensus 314 ~i~e 317 (534)
.+..
T Consensus 275 lL~~ 278 (315)
T COG5209 275 LLSS 278 (315)
T ss_pred HHhc
Confidence 6643
No 164
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.39 Score=52.30 Aligned_cols=213 Identities=11% Similarity=0.065 Sum_probs=137.5
Q ss_pred HccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHH
Q 009471 287 CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366 (534)
Q Consensus 287 l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (534)
+.++-+.++..++..|+.+....+-+..+..++++....+.+++.++ .+--+|+..+..+|.- ..+..++.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcev--------y~e~il~d 806 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEV--------YPEDILPD 806 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHh--------cchhhHHH
Confidence 34455668899999999999877777778889999999999999987 7889999988888853 33445777
Q ss_pred HHHh-hcC-----CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChh--HHHH
Q 009471 367 LLAY-LDG-----PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE--MKKL 436 (534)
Q Consensus 367 L~~~-L~~-----~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~--~~~~ 436 (534)
+... ... ++.+-..-.++.++.. .+-.....+ ..+...+.-+++++...+..++..+++++.-.. ....
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 7773 321 3445555577777776 222222222 345666666676667778899999999885321 2223
Q ss_pred HHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcCC-CcchHHHHhh--CCCHHHHHhhcCCCCchhHHHHHHHHHHhh
Q 009471 437 VGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTL-PQNCREVKRD--DKSVPNLVQLLDPSPQNTAKKYAVACLASL 511 (534)
Q Consensus 437 i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~--~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L 511 (534)
+ ..++..++.+.. ++++.+|..|...+..+... ....-.+... -+....+.+.....+++..|..+..++-.+
T Consensus 886 ~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 886 F--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred H--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 3 234556666665 67788999999999888632 2222222211 123344444444554556777766665444
No 165
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.42 E-value=0.032 Score=46.30 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=61.3
Q ss_pred CcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 400 GFFPRLVHVL-KAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 400 ~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
.++..|+.+| .+.++.+...||.=|+.+++. |+.+..+.+.|+-..+++++.+++++|+..|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3588999999 455788888999999999965 8999999888999999999999999999999999987753
No 166
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=6.2 Score=44.56 Aligned_cols=254 Identities=15% Similarity=0.084 Sum_probs=144.9
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCEN 231 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~ 231 (534)
.+.+..|+..+...|...+-.|++.+..+....|.. +++ ..+...+.++.-.+ +..-..++-+|+.++...--.-
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 456677777778889999999999999999888733 322 45566666554433 6677789999999987652100
Q ss_pred HHHhcCCHHHHHHHHcc--------CCHHHHHHHHHHHHHhhcChhhH--HHHHhCCChHH-HHHHHccCChHHHHHHHH
Q 009471 232 WLVSEGVLPPLIRLVES--------GSTVGKEKATISLQRLSMSAEMA--RAIVGHGGVRP-LIEICQTGDSVSQAAAAC 300 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~Ls~~~~~~--~~l~~~g~i~~-Lv~ll~~~~~~~~~~a~~ 300 (534)
.. -..++|.++.-|.- ....+|..|+-++|.++...+.. ..+.. ..... |...+-+.+-..|..|..
T Consensus 416 s~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 00 01346666665532 24458889999999887653322 11211 11122 223344556667777777
Q ss_pred HHHHccCCchHHHHHHhhCcHHHHHHHhhcCCCh--hHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh-hcC--Cc
Q 009471 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILL--GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY-LDG--PL 375 (534)
Q Consensus 301 aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~--~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~-L~~--~~ 375 (534)
++-... ...|-+|.=++++..-+.- ..+.++...+.--....+..++.+++ .++.. +.+ +.
T Consensus 494 AlqE~V---------GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 494 ALQENV---------GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVK 559 (1133)
T ss_pred HHHHHh---------ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHH
Confidence 764332 2233333333344333321 12333333333322234444433322 22221 222 56
Q ss_pred hHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 376 PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 376 ~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
+++.+.++|.+|+.. ..+......+++++....+.+...+.-...+.+.+.
T Consensus 560 irelaa~aL~~Ls~~--~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLT--EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHHHHHHh--hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 899999999998862 133445677889998888888776665555544444
No 167
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=1.9 Score=48.52 Aligned_cols=243 Identities=15% Similarity=0.112 Sum_probs=141.0
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhhcC----hhh
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS-TVGKEKATISLQRLSMS----AEM 270 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~-~~~~~~A~~~L~~Ls~~----~~~ 270 (534)
+.++.|+..+++.+..+|=.|+..++.++...+ ..+ ...++...+.++...+ ....-.++-+|..|+.. +..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 678888888899999999999999999998776 111 2234666777666544 44555788888888753 111
Q ss_pred HHHHHhCCChHHHHHHHcc--------CChHHHHHHHHHHHHccCCchH--HHHHHhhCcHHH-HHHHhhcCCChhHHHH
Q 009471 271 ARAIVGHGGVRPLIEICQT--------GDSVSQAAAACTLKNISAVPEV--RQMLAEEGIVSV-MIKLLDCGILLGSKEY 339 (534)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~--------~~~~~~~~a~~aL~nLa~~~~~--~~~i~e~g~i~~-L~~ll~~~~~~~v~~~ 339 (534)
...+ +|.++.-|.- ....+|.+||-++|.++..-+- -+.+. ...... +...+.+... ..|+.
T Consensus 418 l~dV-----vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrev-ncRRA 490 (1133)
T KOG1943|consen 418 LEDV-----VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREV-NCRRA 490 (1133)
T ss_pred HHHH-----HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchh-hHhHH
Confidence 2222 3555544432 2456889999999999873211 11111 112222 2233344444 67888
Q ss_pred HHHHHHHHccCChHHHHHHHhcCChHHHHHhh---cC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHH-----
Q 009471 340 AAECLQNLTASNENLRRSVVSEGGIRSLLAYL---DG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVL----- 409 (534)
Q Consensus 340 a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L---~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL----- 409 (534)
|..++....... |-.|.=+.++ +. -..+.+|-..+..- ...-.|+..++++-+
T Consensus 491 AsAAlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~-------ia~~~~y~~~~f~~L~t~Kv 553 (1133)
T KOG1943|consen 491 ASAALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVS-------IAEFSGYREPVFNHLLTKKV 553 (1133)
T ss_pred HHHHHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHH-------HHhhhhHHHHHHHHHHhccc
Confidence 888888766421 1122111222 11 11122222221111 111133444444433
Q ss_pred hcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 410 KAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 410 ~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
.+-+..+++.++++|.+|+.. +++ ...+..++|++...+++...|.-...+...+.
T Consensus 554 ~HWd~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 554 CHWDVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred ccccHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 345789999999999998843 332 23456888888888888777766555555554
No 168
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.10 E-value=1.2 Score=45.25 Aligned_cols=269 Identities=15% Similarity=0.172 Sum_probs=146.7
Q ss_pred CcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHH-HhhcChhhHH
Q 009471 196 SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQ-RLSMSAEMAR 272 (534)
Q Consensus 196 g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~-~Ls~~~~~~~ 272 (534)
+-|..++.-++.+ ...+|..++--|+.-+.+++.+..+...|.+..+++.+.+. +......++.++. -++.+.....
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 4477777777743 36889999888998898999999999999999999999554 3324444444444 4444443344
Q ss_pred HHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhc--------CCChhHHHHHHHH
Q 009471 273 AIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC--------GILLGSKEYAAEC 343 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~--------~~~~~v~~~a~~~ 343 (534)
.+.+.+....++.++... ........- .....+-.+. ....+..+-+.+.. ......+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHH-HHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 444455556667777611 000000000 0000000111 11122222222211 1111345556666
Q ss_pred HHHHcc--------------CChHHHHHHHhcCChHHHHHhhc----C---------Cc-----hHHHHHHHHHHhhc--
Q 009471 344 LQNLTA--------------SNENLRRSVVSEGGIRSLLAYLD----G---------PL-----PQESAVGALRNLVG-- 389 (534)
Q Consensus 344 L~~La~--------------~~~~~~~~i~~~g~l~~L~~~L~----~---------~~-----~~~~a~~aL~~La~-- 389 (534)
+-.++. ..+..++.+...|+++.++..+. . +. ....++.+|-|-+.
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 655531 12345667777889999999874 1 11 23567888888776
Q ss_pred CccHHHHHh--cCcHHHHHH-HHh---cCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhh-------c----
Q 009471 390 SVSQEVLIS--LGFFPRLVH-VLK---AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLL-------E---- 451 (534)
Q Consensus 390 ~~~~~~l~~--~~~i~~Lv~-lL~---~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll-------~---- 451 (534)
..+...+.. .+.++.+.. ++. ......+..+++.+.|++.+ ++.++.+...+....+..+. +
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 344444443 222333322 222 23345577889999999965 66666665553322221111 1
Q ss_pred ---CCChHHHHHHHHHHHHhcCC
Q 009471 452 ---AKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 452 ---~~~~~v~~~A~~aL~~L~~~ 471 (534)
....+....++.+|-||+.+
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred ccccccchHHHHHHHhHHHheee
Confidence 12355667777788887744
No 169
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.07 E-value=0.53 Score=42.63 Aligned_cols=90 Identities=21% Similarity=0.249 Sum_probs=66.9
Q ss_pred CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc
Q 009471 374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE 451 (534)
Q Consensus 374 ~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~ 451 (534)
|.+|.+++.+++.|+..- ..++ ..+++.+...|+++++.||+.|+.+|.+|... -..+.. .+..++.++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~--~~~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~-----l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY--PNLV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ-----LFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhC--cHHH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh-----hhHHHHHHHc
Confidence 557788888888888610 1111 34688899999999999999999999998754 122221 2467777888
Q ss_pred CCChHHHHHHHHHHHHhcCC
Q 009471 452 AKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 452 ~~~~~v~~~A~~aL~~L~~~ 471 (534)
+++++++..|...+..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999998744
No 170
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.97 E-value=0.25 Score=45.22 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHhc----------------CCHHHHHHHHcc------CCHHHHHHHHHHHHHhh
Q 009471 208 TSPRIREKTVTVICSLAESGSCENWLVSE----------------GVLPPLIRLVES------GSTVGKEKATISLQRLS 265 (534)
Q Consensus 208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~~----------------g~i~~Lv~lL~~------~~~~~~~~A~~~L~~Ls 265 (534)
++......++..|+|++..++....+.+. ..+..|+..+.. ....-..+.+.++.|+|
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34455677788888888877644433322 246666666655 13335668899999999
Q ss_pred cChhhHHHHHh--CCC--hHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhh---CcHHHHHHHhh
Q 009471 266 MSAEMARAIVG--HGG--VRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE---GIVSVMIKLLD 329 (534)
Q Consensus 266 ~~~~~~~~l~~--~g~--i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~---g~i~~L~~ll~ 329 (534)
..++.++.+.. .+. +..|+.+..+.+..-|.-++++|+|+|...+....+... ++++.++--+.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999886 344 677888888887777788999999999988777777653 45555444443
No 171
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.95 E-value=3.6 Score=45.64 Aligned_cols=188 Identities=21% Similarity=0.188 Sum_probs=116.4
Q ss_pred HHHHhhcC-hhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcH--HHHHHHhhcCCChh
Q 009471 260 SLQRLSMS-AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIV--SVMIKLLDCGILLG 335 (534)
Q Consensus 260 ~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i--~~L~~ll~~~~~~~ 335 (534)
+|++++.+ +++++.+.+.||+..+...+.. ...+.+..+.+.+.|++...+.+........+ ..+-.++..-+..+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 56677654 7789999999999999999974 56678889999999999865443333221111 23333333333226
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhc--CccHHHHHhcCcHHH-HHHHHh-c
Q 009471 336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG--SVSQEVLISLGFFPR-LVHVLK-A 411 (534)
Q Consensus 336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~-Lv~lL~-~ 411 (534)
.-++++..|..+....+..- . ...+..+...+..... ............+.+ +..++. +
T Consensus 574 rsY~~~siLa~ll~~~~~~~----~-------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTT----E-------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCc----c-------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 78889999999987544311 1 1112222222222222 112222223333334 555564 4
Q ss_pred CCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCC-ChHHHHHHHHH
Q 009471 412 GSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAK-PNSVREVAAQA 464 (534)
Q Consensus 412 ~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~-~~~v~~~A~~a 464 (534)
..++.+..|.|++.++.. ++++++.+.+.|+++.+.+.-... ..+++..+...
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 568999999999999995 478999999999999888776522 34444444433
No 172
>PRK14707 hypothetical protein; Provisional
Probab=94.67 E-value=14 Score=44.94 Aligned_cols=334 Identities=14% Similarity=0.094 Sum_probs=175.4
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCC-HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHH
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPL 242 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L 242 (534)
-.+......|+..|..-+-++++....+ +.-++...+.-|+ -++ ..++..|...-..++.+++.+..+- ..++..+
T Consensus 301 wpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~ 378 (2710)
T PRK14707 301 WADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSV 378 (2710)
T ss_pred CCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHH
Confidence 4566666677777777766677655433 4445555555554 455 6677777777777777777666553 3345555
Q ss_pred HHHHcc-CCHHHHHHHHHHH-HHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHH-HHccCCchHHHHHHhhC
Q 009471 243 IRLVES-GSTVGKEKATISL-QRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL-KNISAVPEVRQMLAEEG 319 (534)
Q Consensus 243 v~lL~~-~~~~~~~~A~~~L-~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL-~nLa~~~~~~~~i~e~g 319 (534)
++-|.. ++..+...|+..| ..+..+.+-+..+-..|+-..|=.+.+=++..+=..++..| ..++.+.+.++.+--.+
T Consensus 379 lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~ 458 (2710)
T PRK14707 379 LNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN 458 (2710)
T ss_pred HhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH
Confidence 555554 4444555555555 44666666677776566555555555544444444444444 45666778887775555
Q ss_pred cHHHHHHHh-hcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHHHHHhhc----CccH
Q 009471 320 IVSVMIKLL-DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVG----SVSQ 393 (534)
Q Consensus 320 ~i~~L~~ll-~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~aL~~La~----~~~~ 393 (534)
+.. .++.+ +=++. .+...++..|..=-..+...++.+- ...+..-++.|.. |+ +..|..++..++. +...
T Consensus 459 va~-~LnalSKWPd~-p~c~~aa~~La~~l~~~~~l~~a~~-~q~~~~~L~aLSK~Pd-~~~c~~A~~~lA~rl~~~~~l 534 (2710)
T PRK14707 459 VTQ-ALDALSKWPDT-PICGQTASALAARLAHERRLRKALK-PQEVVIALHSLSKWPD-TPICAEAASALAERVVDELQL 534 (2710)
T ss_pred HHH-HHHHhhcCCCC-hhHHHHHHHHHHHhcccHHHHhhcC-HHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHhccchhh
Confidence 333 33444 33343 4554555555444334555543332 2223333344433 33 3355566666654 2222
Q ss_pred HHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcC
Q 009471 394 EVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 394 ~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~ 470 (534)
...+...-+..+++.+ +..+....+.++..|..+. ..+..++.+- ...|..+++-+. .++......|...|.....
T Consensus 535 ~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~ 613 (2710)
T PRK14707 535 RKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERLV 613 (2710)
T ss_pred hhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Confidence 2222222234444444 3444556666666666554 3355555553 344677777765 3444444444444554444
Q ss_pred CCcch-HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHH
Q 009471 471 LPQNC-REVKRDDKSVPNLVQLLDPSPQNTAKKYAVAC 507 (534)
Q Consensus 471 ~~~~~-~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~ 507 (534)
.+++. ..+- ...+..++.-|..-+....-..++..
T Consensus 614 ~~~~lr~~l~--~q~lan~lNALSKWP~s~~C~~Aa~r 649 (2710)
T PRK14707 614 DEPDLRKELD--PVDVTNVLNALSKWPGTEVCAEVARL 649 (2710)
T ss_pred cChhhhhhcc--HHHHHHHHhhhhcCCCchHHHHHHHH
Confidence 44443 3322 35567777777665544433333333
No 173
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.58 E-value=0.034 Score=56.27 Aligned_cols=179 Identities=11% Similarity=0.040 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc----Chhh----HHHHHhCCC
Q 009471 209 SPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM----SAEM----ARAIVGHGG 279 (534)
Q Consensus 209 ~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~----~~~~----~~~l~~~g~ 279 (534)
+.-++..|.+++..+.-++. ........+....+...+.+..-..++.++|++.+++. +.++ ...+.. -.
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~l 482 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LL 482 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HH
Confidence 35577788888888877776 44555566777888888888888899999999999873 1122 111111 00
Q ss_pred hHHHHHH---HccCChHHHHHHHHHHHHccCCch----HHHHHHhhCcHHHHHHHhh-cCCChhHHHHHHHHHHHHccCC
Q 009471 280 VRPLIEI---CQTGDSVSQAAAACTLKNISAVPE----VRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASN 351 (534)
Q Consensus 280 i~~Lv~l---l~~~~~~~~~~a~~aL~nLa~~~~----~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~~~ 351 (534)
+..++.. +......++..+.++|.|+...-+ ......+++.+..+..-.. .+.. .++.+++.+++|+-.+.
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~-kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAM-KVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceeccccc-ccchHHHHHHHHhhcCc
Confidence 1122211 222356788999999999876221 1111122333333333322 3333 79999999999998732
Q ss_pred hH-HHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc
Q 009471 352 EN-LRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG 389 (534)
Q Consensus 352 ~~-~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~ 389 (534)
.. .+..-......+.|..++.+ -.+|..|.++|.--..
T Consensus 562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 21 11111112235556666543 6688888888877665
No 174
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=3.4 Score=47.00 Aligned_cols=213 Identities=16% Similarity=0.205 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHH
Q 009471 207 ATSPRIREKTVTVICSLAESGSCENWLVSE--GVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRP 282 (534)
Q Consensus 207 ~~~~~v~~~A~~~L~~La~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~ 282 (534)
+.+..+|..+-++|..++..++......+. .+...|..-+++.+...+...+.+|..|-.. .+....+. ..|+.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHH
Confidence 346899999999999999885433222221 2334444455555666777777777776432 23332221 12333
Q ss_pred HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhC------cHHHHHHHhhcCCCh-hHHHHH--HHHHHHHccCChH
Q 009471 283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEG------IVSVMIKLLDCGILL-GSKEYA--AECLQNLTASNEN 353 (534)
Q Consensus 283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g------~i~~L~~ll~~~~~~-~v~~~a--~~~L~~La~~~~~ 353 (534)
++-.++..+...+..+..+|..++. -....+.| .+..++..+..+... ..+..+ +-++..+....
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~-- 816 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF-- 816 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH--
Confidence 3333477788889999999988873 11111222 566666666544111 222222 33333333211
Q ss_pred HHHHHHhcCChHHHHHh----hcC--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009471 354 LRRSVVSEGGIRSLLAY----LDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC 425 (534)
Q Consensus 354 ~~~~i~~~g~l~~L~~~----L~~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (534)
..+.+.+.++.+++. |.+ ++++..|++.+..++. ++..-.-....+++.++.++......++...-..+-
T Consensus 817 --~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 817 --KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred --hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 122333445555554 332 6788999999999987 322222223447888888888888888888888888
Q ss_pred HhcC
Q 009471 426 RVCT 429 (534)
Q Consensus 426 ~la~ 429 (534)
.|.+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 8774
No 175
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.45 E-value=0.18 Score=44.65 Aligned_cols=144 Identities=22% Similarity=0.271 Sum_probs=91.9
Q ss_pred hHHHHHhhc----CCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHH-HH
Q 009471 364 IRSLLAYLD----GPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKK-LV 437 (534)
Q Consensus 364 l~~L~~~L~----~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~-~i 437 (534)
++.++..+. .+++|..+.-++..+-. ..++.. ...+-+.+-..+..++.+-...+..++..+-.. ++... .+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~-~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD-AAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 444555443 26778877777777632 111111 111223333344444445666777777777643 66554 44
Q ss_pred HhcCchHHHHHhhc--CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchh-HHHHHHHHHHhh
Q 009471 438 GEAGCTPLLIKLLE--AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNT-AKKYAVACLASL 511 (534)
Q Consensus 438 ~~~g~v~~Lv~ll~--~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~-~k~~a~~~L~~L 511 (534)
...|+++.+..++. +++..++..++++|..= ...++++.++.+ .+++.|-+++..++++. +|-+|...|+.|
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aA-c~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAA-CIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHH-TTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHH-HccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 67899999999998 88899999999988666 455555555553 78899999997665555 888888887653
No 176
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.37 E-value=0.081 Score=32.55 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAE 225 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (534)
+|.++++++++++++|..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
No 177
>PRK14707 hypothetical protein; Provisional
Probab=94.35 E-value=17 Score=44.40 Aligned_cols=326 Identities=16% Similarity=0.159 Sum_probs=173.9
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHH
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPL 242 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L 242 (534)
..+.....+|+..+..-+...++.+..+- ..-+..|+...+. ++.+.+..+......++.++..+..+ ...+|..+
T Consensus 133 ~~~~~~c~~a~a~i~~~~~~~~~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~ 210 (2710)
T PRK14707 133 NLDSGRCERAVARLARHLRREDKARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATV 210 (2710)
T ss_pred CCCchHHHHHHHHHHHHhccccchhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHH
Confidence 33444455555555554443333333232 2336666665543 34788888888878887777655555 44456666
Q ss_pred HHHHcc--CCHHHHHHHHHHHH-HhhcChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHccCCchHHHHHHhh
Q 009471 243 IRLVES--GSTVGKEKATISLQ-RLSMSAEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVPEVRQMLAEE 318 (534)
Q Consensus 243 v~lL~~--~~~~~~~~A~~~L~-~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~~~~~~i~e~ 318 (534)
++-+.. +++..+. ++..|. .++.++.-+..+-..|....|=.+++-++. .....+..+=..++..+..++.+...
T Consensus 211 lNa~sKWp~~~~c~~-aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q 289 (2710)
T PRK14707 211 LNALCKWPDTPDCGN-AVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI 289 (2710)
T ss_pred HHHHhcCCCChhHHH-HHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH
Confidence 665554 3555544 444444 455544444444334444444455554444 34444444445666666776666554
Q ss_pred CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccHH
Q 009471 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQE 394 (534)
Q Consensus 319 g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~~ 394 (534)
++-..|-.+-+-.+. .+...+...|..=-.+++..+. -++.-++...++.|.. ...+..+......++......
T Consensus 290 ~vanalNalSKwpd~-~vc~~Aa~~la~rl~~d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~ 367 (2710)
T PRK14707 290 NVTQALNALSKWADL-PVCAEAAIALAERLADDPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELR 367 (2710)
T ss_pred HHHHHHhhhhcCCCc-hHHHHHHHHHHHHHhccHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhh
Confidence 433333333333443 5544444444443334666653 3344456666666654 334566666666666532222
Q ss_pred HHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHH-HhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc-CC
Q 009471 395 VLISLGFFPRLVHVLK-AGSLGAQQAAASALC-RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV-TL 471 (534)
Q Consensus 395 ~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~-~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~-~~ 471 (534)
.-++...+...++.+. =++..+...|+..|. .+..+++.++.+-..|+-..|-.+-+-++..+...+..+|..-. .+
T Consensus 368 ~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d 447 (2710)
T PRK14707 368 KDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHD 447 (2710)
T ss_pred cccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc
Confidence 2233445666666664 334455555555554 57777889998866665555555556677777777777776544 33
Q ss_pred CcchHHHHhhCCCHHHHHhhcCCCCc
Q 009471 472 PQNCREVKRDDKSVPNLVQLLDPSPQ 497 (534)
Q Consensus 472 ~~~~~~~~~~~~~v~~Lv~lL~~~~~ 497 (534)
.+-++.+-- -.|...+.-|..=|+
T Consensus 448 ~~l~~~~~p--~~va~~LnalSKWPd 471 (2710)
T PRK14707 448 TELCKALDP--INVTQALDALSKWPD 471 (2710)
T ss_pred HHHHhhcCh--HHHHHHHHHhhcCCC
Confidence 443333322 234555555554333
No 178
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.32 E-value=3.7 Score=45.36 Aligned_cols=259 Identities=17% Similarity=0.093 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH
Q 009471 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV 246 (534)
Q Consensus 167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL 246 (534)
.+..+..|+.++...++. +. ..-...+.++.|.++......++-..-.++|+..+..++-.....++.++|.++.+.
T Consensus 504 ~~~~ki~a~~~~~~~~~~--~v-l~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKV--KV-LLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CCchhHHHHHHHHhccCc--ee-ccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 455577777777666521 11 111234778888888887888999999999999998877555666777788877766
Q ss_pred c--cCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCC----hHHHHHHHHHHHHccCC-c-hHHHHHHhh
Q 009471 247 E--SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGD----SVSQAAAACTLKNISAV-P-EVRQMLAEE 318 (534)
Q Consensus 247 ~--~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~----~~~~~~a~~aL~nLa~~-~-~~~~~i~e~ 318 (534)
- +.++.+...+-.++..++....+...+ ..-.+|.++..+..++ +.....++..|.-+.++ + ..-+.+. .
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~ 658 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-C 658 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-H
Confidence 4 357777778888888877644333222 1334799999998765 55666677777655552 2 3333333 4
Q ss_pred CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChH--HHHHhh---cCCchHHHHHHHHHHhhcC---
Q 009471 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR--SLLAYL---DGPLPQESAVGALRNLVGS--- 390 (534)
Q Consensus 319 g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~--~L~~~L---~~~~~~~~a~~aL~~La~~--- 390 (534)
-++|.+.+..-+.++.++-.++-+||+.+.+.....-..--.++|.. .+++++ =+|++-+.++...+.+...
T Consensus 659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit 738 (1005)
T KOG2274|consen 659 YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLIT 738 (1005)
T ss_pred HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHH
Confidence 46888888875444448889999999998875433211111233333 444433 2466555555555555431
Q ss_pred ccHHHHHh--cCcHHH-HHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 391 VSQEVLIS--LGFFPR-LVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 391 ~~~~~l~~--~~~i~~-Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
...+.+-. ..++.. +.++-+.....+-+.-..++++|...
T Consensus 739 ~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 739 HASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence 11111111 011222 23333556677778888888888765
No 179
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.28 E-value=7.3 Score=39.88 Aligned_cols=101 Identities=12% Similarity=0.221 Sum_probs=82.7
Q ss_pred HHHhc-CCcHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHc-cC---CHHHHHHHHHH
Q 009471 190 LAVMG-RSNIAALVQLLTATS---PRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVE-SG---STVGKEKATIS 260 (534)
Q Consensus 190 ~~i~~-~g~v~~Lv~lL~~~~---~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~-~~---~~~~~~~A~~~ 260 (534)
+.+++ ......|...+++.. +.+-..|+.++..+..+++ +-..+.+.|+++.++..+. .+ +.++....-.+
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 34455 344566667777764 7899999999999999887 7788889999999999888 54 56667777788
Q ss_pred HHHhhcChhhHHHHHhCCChHHHHHHHccC
Q 009471 261 LQRLSMSAEMARAIVGHGGVRPLIEICQTG 290 (534)
Q Consensus 261 L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~ 290 (534)
+..||-|....+.+.+.+.++.+++++.+.
T Consensus 179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 179 LSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999999999999998764
No 180
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=3.5 Score=42.49 Aligned_cols=252 Identities=14% Similarity=0.043 Sum_probs=129.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHH-HhCCChHHH
Q 009471 206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAI-VGHGGVRPL 283 (534)
Q Consensus 206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l-~~~g~i~~L 283 (534)
++++..++..|++.|++.++..+.+..-...-.+..+++-|.++ +.++.-.+..+|..+...-.+.... .=.+..-.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 45668899999999999998854322222333566666666554 7778878887777766543332211 012333456
Q ss_pred HHHHccCChHHHHHHHHHHHHccC--CchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHH
Q 009471 284 IEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359 (534)
Q Consensus 284 v~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~ 359 (534)
..+..+.+++++..+...+..|+. +...+..+.| .+....++-.+.+.++ -.-.|+......+..+- .++...
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p--~va~ACr~~~~~c~p~l-~rke~~ 424 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNP--YVARACRSELRTCYPNL-VRKELY 424 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCCh--HHHHHHHHHHHhcCchh-HHHHHH
Confidence 677788899999888887777765 2344555554 2222333334455554 24455555555554221 121111
Q ss_pred hcCChHHHHHhhcCCchHHHHHHHHHHhhc---CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHH
Q 009471 360 SEGGIRSLLAYLDGPLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMK 434 (534)
Q Consensus 360 ~~g~l~~L~~~L~~~~~~~~a~~aL~~La~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~ 434 (534)
+ .++.. ++..-.+..+ .....|. +-.++... -.......++++.-+.++..+...-.++..+ +..+
T Consensus 425 ~--~~q~~---ld~~~~~~q~--Fyn~~c~~L~~i~~d~l~--~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c 495 (533)
T KOG2032|consen 425 H--LFQES---LDTDMARFQA--FYNQWCIQLNHIHPDILM--LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAAC 495 (533)
T ss_pred H--HHhhh---hHHhHHHHHH--HHHHHHHHHhhhCHHHHH--HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0 11111 1100001111 1111111 00011000 0111222233333345666666555555533 4444
Q ss_pred HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 435 ~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
......-....|-.+...+-++++..|..|+..+.
T Consensus 496 ~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 496 SSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 44433334566667777888999999999987664
No 181
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=10 Score=41.45 Aligned_cols=440 Identities=16% Similarity=0.130 Sum_probs=208.5
Q ss_pred cccCccchhhHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHH-------HHHHHHHHHHHhcCCC----------
Q 009471 36 QIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSK-------TLKEAIELAELCVKEK---------- 98 (534)
Q Consensus 36 ~~~~f~~~~~~i~~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~l~~~c~~~~---------- 98 (534)
+-+.=+.||..|-+|+--|...=- .|+++-. .++.=++.+ .|++...++-+--..-
T Consensus 32 espvn~r~c~~~lskllyll~qge------~~~~~ea-te~ff~~tKlfQskd~~LRr~vYl~Ikels~isedviivtss 104 (865)
T KOG1078|consen 32 ESPVNPRKCRHILSKLLYLLNQGE------HFGETEA-TELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVIIVTSS 104 (865)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccc------ccchhhH-HHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhhhhHH
Confidence 345568899999999887765311 3444433 333333333 3333333332210000
Q ss_pred ----CCCc--chhhhhhHhhhchhhhh-hhchhhHHhhCCCCCCC-----cccccCCCCchhhhhhhchHHHHHHHHhcC
Q 009471 99 ----YEGK--LRMQSDLDALSGKLDLN-LHDCGLLIKTGVLGEAT-----LPLSVAGSSTDAEATTHGNTRELLARLQIG 166 (534)
Q Consensus 99 ----~~~~--l~~~s~~~~~~~~l~~~-~~~~~~~~~~g~l~~~~-----~~v~~~p~~~a~~~~~~~~i~~Ll~~L~~~ 166 (534)
..|+ +.-...++++...+|+. +.+..+..+.+..+... +.+.+.-=...+.+....+.........+.
T Consensus 105 lmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~ 184 (865)
T KOG1078|consen 105 LMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSD 184 (865)
T ss_pred HHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcH
Confidence 1221 33344667777777766 55566666666543221 112111101112333344444444444444
Q ss_pred CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHH
Q 009471 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT---SPRIREKTVTVICSLAESGS-CENWLVSEGVLPPL 242 (534)
Q Consensus 167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~L 242 (534)
+.-.+..|+.-|.++-+.+.- .+..+++.+.++ ++--+-.-.++...+..+.+ .... ..+.+
T Consensus 185 ~~m~QyHalglLyqirk~drl---------a~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~-----~~~fl 250 (865)
T KOG1078|consen 185 NIMVQYHALGLLYQIRKNDRL---------AVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSP-----LFPFL 250 (865)
T ss_pred HHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhh-----HHHHH
Confidence 555567777777776543321 133333333332 22222222233333333322 2222 36777
Q ss_pred HHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-c--------hHHH
Q 009471 243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-P--------EVRQ 313 (534)
Q Consensus 243 v~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~--------~~~~ 313 (534)
-..+.+....+...|+.++.++...... .+.. .+..|--+|.++.+..|..|.++|..++.. | +.-.
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~~~r--~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNTNSR--ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhccccCHh--hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 7888888888899999999998653211 1111 457787889999999999999999998862 2 2222
Q ss_pred HHHhhC---cHHHHHHHhhcCCCh---hHHHHHHHHHHHHccCChH-----HHHH-----HHhcCChHHHHHhhcC---C
Q 009471 314 MLAEEG---IVSVMIKLLDCGILL---GSKEYAAECLQNLTASNEN-----LRRS-----VVSEGGIRSLLAYLDG---P 374 (534)
Q Consensus 314 ~i~e~g---~i~~L~~ll~~~~~~---~v~~~a~~~L~~La~~~~~-----~~~~-----i~~~g~l~~L~~~L~~---~ 374 (534)
.+.+.+ .-..+.-+++.|... ...........+++..+.- .+.. -.+.+.+.-|.++|.+ -
T Consensus 327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~ 406 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGF 406 (865)
T ss_pred hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCc
Confidence 222211 122334445555541 1122233333333321110 0000 0011112222222221 1
Q ss_pred chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCC
Q 009471 375 LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK 453 (534)
Q Consensus 375 ~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~ 453 (534)
+.+...+.++..+.. .... ...++..|..++.+.. ...-+..+|..+... .-+......++..+.+.+.-.
T Consensus 407 e~K~aivd~Ii~iie~~pds----Ke~~L~~LCefIEDce--~~~i~~rILhlLG~E--gP~a~~Pskyir~iyNRviLE 478 (865)
T KOG1078|consen 407 EFKRAIVDAIIDIIEENPDS----KERGLEHLCEFIEDCE--FTQIAVRILHLLGKE--GPKAPNPSKYIRFIYNRVILE 478 (865)
T ss_pred hHHHHHHHHHHHHHHhCcch----hhHHHHHHHHHHHhcc--chHHHHHHHHHHhcc--CCCCCCcchhhHHHhhhhhhh
Confidence 223333333333333 1111 0122334444443221 222333344443321 000000112455555555557
Q ss_pred ChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 454 PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 454 ~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+..+|..|..+|..+....+.... .....|.+++... +.+++..|.-.|.++-..
T Consensus 479 n~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhhhh
Confidence 788999999999999733222111 2234455777665 347888888888887744
No 182
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.21 E-value=2.4 Score=44.26 Aligned_cols=157 Identities=16% Similarity=0.182 Sum_probs=108.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCC---hhHHHHHHHHHHHHccCChHHHHH
Q 009471 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL---LGSKEYAAECLQNLTASNENLRRS 357 (534)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~---~~v~~~a~~~L~~La~~~~~~~~~ 357 (534)
..+.+++.++++..+..+..-|..++.++.....++...++..|..+++++.. .++...++.++..+-...- ....
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSWE 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eeee
Confidence 56778888899999988999999999999999999999999999999998875 1334445555555443211 1111
Q ss_pred HHhcCChHHHHHhhc----CCchHHHHHHHHHHhhc-Cc-cHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-
Q 009471 358 VVSEGGIRSLLAYLD----GPLPQESAVGALRNLVG-SV-SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS- 430 (534)
Q Consensus 358 i~~~g~l~~L~~~L~----~~~~~~~a~~aL~~La~-~~-~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~- 430 (534)
.+...++.....+.. +..+...|+..|-++.. .. ....+.+.--+..|+..++..+..++..|...+..+...
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 122223334444332 14567889999999887 33 345566677799999999999999999988888777642
Q ss_pred -hhHHHHHH
Q 009471 431 -AEMKKLVG 438 (534)
Q Consensus 431 -~~~~~~i~ 438 (534)
++.++.+.
T Consensus 245 ~~~~R~~~~ 253 (713)
T KOG2999|consen 245 PDDKRFEMA 253 (713)
T ss_pred ChHHHHHHH
Confidence 44444443
No 183
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.20 E-value=4.6 Score=41.12 Aligned_cols=268 Identities=17% Similarity=0.124 Sum_probs=143.4
Q ss_pred hhhchHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC-CCHHHH-HHHHHHHHHhhcCC
Q 009471 151 TTHGNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSPRIR-EKTVTVICSLAESG 227 (534)
Q Consensus 151 ~~~~~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~-~~A~~~L~~La~~~ 227 (534)
.+...|..++..|..+ ....|..++-.|..-+. ++..+..+...|.+..+++.+.. ++..+- -.++.++..++.+.
T Consensus 18 rf~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~ 96 (361)
T PF07814_consen 18 RFADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG 96 (361)
T ss_pred hHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC
Confidence 3555678888888744 34557777777777765 67788899999999999999844 444244 44455555556665
Q ss_pred chhHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc---------CChH
Q 009471 228 SCENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT---------GDSV 293 (534)
Q Consensus 228 ~~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~---------~~~~ 293 (534)
..-..+...+....++++++-. .......-. .+++... +. .+..+...... ....
T Consensus 97 ~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk~~---~~-----~~~~~~~~~~~~~~~~~~~~~~ls 165 (361)
T PF07814_consen 97 LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSKVQ---QK-----SRSLCKELLSSGSSWKSPKPPELS 165 (361)
T ss_pred cchhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhhHHH---HH-----HHHHHHHHHhccccccccCCcccc
Confidence 5555555666677778888711 000000000 0011100 00 00111111100 0111
Q ss_pred HHHHHHHHHHHcc---------------CCchHHHHHHhhCcHHHHHHHhhc----CC------C-----hhHHHHHHHH
Q 009471 294 SQAAAACTLKNIS---------------AVPEVRQMLAEEGIVSVMIKLLDC----GI------L-----LGSKEYAAEC 343 (534)
Q Consensus 294 ~~~~a~~aL~nLa---------------~~~~~~~~i~e~g~i~~L~~ll~~----~~------~-----~~v~~~a~~~ 343 (534)
-+..+..++-.++ ..+..++.+.+.|++..+++++.+ .. . ....+.++.+
T Consensus 166 p~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~I 245 (361)
T PF07814_consen 166 PQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSI 245 (361)
T ss_pred cccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHH
Confidence 2233333333331 122456677778899999998852 11 0 0234568888
Q ss_pred HHHHccCChHHHHHHHhc--CChHHHHHh-hc---C--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHH----
Q 009471 344 LQNLTASNENLRRSVVSE--GGIRSLLAY-LD---G--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVL---- 409 (534)
Q Consensus 344 L~~La~~~~~~~~~i~~~--g~l~~L~~~-L~---~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL---- 409 (534)
|-+.+..++.++...... +.+..+... +. + +.....+++.+.|++- +.....+...++...+..+.
T Consensus 246 LEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~ 325 (361)
T PF07814_consen 246 LESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFF 325 (361)
T ss_pred HHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhc
Confidence 888887777766666532 233333222 22 2 3446789999999987 33434444433322221111
Q ss_pred ---h-------cCCHHHHHHHHHHHHHhcCC
Q 009471 410 ---K-------AGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 410 ---~-------~~~~~v~~~A~~aL~~la~~ 430 (534)
. ...-+....+.+++-||+..
T Consensus 326 ~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 326 CVLSLPNYVPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred ccccccccccccccchHHHHHHHhHHHheee
Confidence 1 01125666777777777754
No 184
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.88 E-value=0.94 Score=43.22 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcC-CCcchHHHHhhCCCHHHHHhh
Q 009471 415 GAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQL 491 (534)
Q Consensus 415 ~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~l 491 (534)
.....|+..|.-++ -++..+..+.+...+..|++++. ...+.++..+..+|..+.. .+.|.+.|.. .+|+..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHHH
Confidence 34556777888777 46999999999999999999995 5678899999999888774 4777776655 7999999999
Q ss_pred cCCCC-chhHHHHHHHHHHhhch
Q 009471 492 LDPSP-QNTAKKYAVACLASLSP 513 (534)
Q Consensus 492 L~~~~-~~~~k~~a~~~L~~L~~ 513 (534)
+.... +..+|..++..|.-...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 98873 45677777777765543
No 185
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.76 E-value=0.54 Score=42.79 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=78.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC---------CCHHHHHHHHHHHHHhh
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA---------TSPRIREKTVTVICSLA 224 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~---------~~~~v~~~A~~~L~~La 224 (534)
....++..+..+.... +.+..|.-.+.. +......|++.||+..|+.+|.. .+.+.+..++.+|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455667776665443 455555555544 34567888899999999998853 34688999999999999
Q ss_pred cCCchhHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009471 225 ESGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLS 265 (534)
Q Consensus 225 ~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls 265 (534)
........++ ..+.+..|+..|.+.+..++..+...|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8877555555 4689999999999999999999999998876
No 186
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.68 E-value=8.7 Score=39.60 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=118.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhcChh----hHHHHHhCCChHHHHHHHccC-------ChHHHHHHHHHHHHccCCch
Q 009471 242 LIRLVESGSTVGKEKATISLQRLSMSAE----MARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKNISAVPE 310 (534)
Q Consensus 242 Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~----~~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLa~~~~ 310 (534)
+..+++..+.+-+-.|.-....+..+++ +++.+.+.-|.+-+-+++.++ +...+..+...|.-.++.|+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5556666666667777777777877654 456678888888888888753 23345667778888888885
Q ss_pred H--HHHHHhhCcHHHHHHHhhcCCChh------HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc---hHHH
Q 009471 311 V--RQMLAEEGIVSVMIKLLDCGILLG------SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL---PQES 379 (534)
Q Consensus 311 ~--~~~i~e~g~i~~L~~ll~~~~~~~------v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~---~~~~ 379 (534)
. ...|++ .||.+.+.+..+.+.+ +.+.+..||..++.. +...+.++..|+++.+.++-..++ -...
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 4 345544 4899999997655433 688899999999986 555668889999999998754432 2344
Q ss_pred HHHHHHHhhc-----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009471 380 AVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV 427 (534)
Q Consensus 380 a~~aL~~La~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~l 427 (534)
++.++.-+.. ++....+.. .+..+-.-+...+...+.+.+..|..+
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444433 222322222 133333333444566777888887754
No 187
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.57 E-value=6.9 Score=40.20 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHh-hcChhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHH
Q 009471 252 VGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKL 327 (534)
Q Consensus 252 ~~~~~A~~~L~~L-s~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~l 327 (534)
+-++.|..-|..+ +......|.-.-...+..+++++.+ .++..+..|+++|..++.+... .+.+ +-++..+++.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAICKVLEA 379 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHHHHHHH
Confidence 3444555434444 4444445542222334667788887 7788899999999999875422 2222 3345556666
Q ss_pred hhcCCChhH-HHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHh--cCcH
Q 009471 328 LDCGILLGS-KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLIS--LGFF 402 (534)
Q Consensus 328 l~~~~~~~v-~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~--~~~i 402 (534)
-.+..+ ++ +..+=.|+.-+++..+..+ |..+..++.+ ...-..++..+..++..-..+.+.. ..+.
T Consensus 380 a~ds~~-~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 380 AKDSQD-EVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HhCCch-hHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 555555 44 4444455666666666544 2333333332 3334455667777776444454433 6789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 403 PRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 403 ~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
|.+++..++.+..|++.|..+|..+.
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 99999999999999999999988876
No 188
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=16 Score=41.01 Aligned_cols=265 Identities=15% Similarity=0.141 Sum_probs=144.7
Q ss_pred CcHHHHHHHhc------CC--CHHHHHHHHHHHHHhhcC----CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 009471 196 SNIAALVQLLT------AT--SPRIREKTVTVICSLAES----GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR 263 (534)
Q Consensus 196 g~v~~Lv~lL~------~~--~~~v~~~A~~~L~~La~~----~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~ 263 (534)
+.++.++..+. .+ ++.-.+-|+.++++|++- ++.+.. .+.-+++++...+++...-++.+|||++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 66788888887 22 367778889999888842 223333 344567777788889888999999999999
Q ss_pred hhc-ChhhHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHccCCch-HHHHHHh--hCcHHHHHHHhhcCCChhHHH
Q 009471 264 LSM-SAEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPE-VRQMLAE--EGIVSVMIKLLDCGILLGSKE 338 (534)
Q Consensus 264 Ls~-~~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~-~~~~i~e--~g~i~~L~~ll~~~~~~~v~~ 338 (534)
.+. +-.....+ ..+++...+.+. +.+-.++..|+-+|..+-.+.+ ....+.. .+.++.++.+.+.-.. +...
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt 565 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLT 565 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHH
Confidence 983 21111111 112244555555 7777889889999988776553 3343433 4455566666654333 2222
Q ss_pred HHHHHHHHHccC-ChHHHHHHHh--cCChHHHHHhhcC-----C---chHHHHHHHHHHhhc-----CccHHHHH--hcC
Q 009471 339 YAAECLQNLTAS-NENLRRSVVS--EGGIRSLLAYLDG-----P---LPQESAVGALRNLVG-----SVSQEVLI--SLG 400 (534)
Q Consensus 339 ~a~~~L~~La~~-~~~~~~~i~~--~g~l~~L~~~L~~-----~---~~~~~a~~aL~~La~-----~~~~~~l~--~~~ 400 (534)
.++.. +... .++......+ ........+++++ + +-+..|.++|..+.. +..++.+. +..
T Consensus 566 ~vme~---iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~ 642 (1010)
T KOG1991|consen 566 NVMEK---IVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPI 642 (1010)
T ss_pred HHHHH---HHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 22222 2111 1111111110 1223445555542 2 234566666666654 23333332 344
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
+++.+-..|++.-.++-+++...+..+... ++....|+ |..+.+.+.+.....+--...+-+|.|..
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~v 710 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYV 710 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence 566666667777778888888887777643 33333332 22444444444333333344444444443
No 189
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.36 E-value=17 Score=40.91 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=110.3
Q ss_pred HHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc----cCC----hHHHHHH
Q 009471 232 WLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ----TGD----SVSQAAA 298 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~----~~~----~~~~~~a 298 (534)
.+.+.|++..++.++.+- ...........|...+....+++.+.+.|+++.|++.+. .+. +.+-...
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 344678999999999863 345566677778888888999999999999999998774 333 3444444
Q ss_pred HHHHHHccCCc---hHHH--HHH--------hhCcHHHHHHHhhcCC---ChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471 299 ACTLKNISAVP---EVRQ--MLA--------EEGIVSVMIKLLDCGI---LLGSKEYAAECLQNLTASNENLRRSVVSEG 362 (534)
Q Consensus 299 ~~aL~nLa~~~---~~~~--~i~--------e~g~i~~L~~ll~~~~---~~~v~~~a~~~L~~La~~~~~~~~~i~~~g 362 (534)
+.++..+.... .... ... +..-+..+++.+.+.. ...+....+.+|-.|+.+++...+.+++
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-- 269 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-- 269 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--
Confidence 44443333211 1110 001 1223667777776442 2367888999999999988877665543
Q ss_pred ChHHHHHhhc-----CC--chHHHHHHHHHHhhc--C------ccHHHHHhcCcHHHHHHHHhcCCHH
Q 009471 363 GIRSLLAYLD-----GP--LPQESAVGALRNLVG--S------VSQEVLISLGFFPRLVHVLKAGSLG 415 (534)
Q Consensus 363 ~l~~L~~~L~-----~~--~~~~~a~~aL~~La~--~------~~~~~l~~~~~i~~Lv~lL~~~~~~ 415 (534)
.+-.+++ .. .--..-+..+..++. + .-++.+++.|++...+++|...-|.
T Consensus 270 ---~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 270 ---HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred ---HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 3333332 11 111223444555544 1 2246778899999999988655443
No 190
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.24 E-value=0.37 Score=36.34 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471 417 QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKR 480 (534)
Q Consensus 417 ~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (534)
.+.|+|++++++.++.....+.+.+.++.++++.+ ++...+|.-+..+|.-++...+.++.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46899999999999888888888899999999997 67788999999999999988888776654
No 191
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.20 E-value=0.13 Score=31.58 Aligned_cols=29 Identities=31% Similarity=0.427 Sum_probs=24.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
++|.++++++++++.||..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999998874
No 192
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.96 E-value=6.1 Score=41.38 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=113.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCH----HHHHHHHHHHHHhhcChhhHHH
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGST----VGKEKATISLQRLSMSAEMARA 273 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~----~~~~~A~~~L~~Ls~~~~~~~~ 273 (534)
...+.+.+.+++...+..+...|..++.+...-..++...++..|.++++++.. ++......++..+-.+.-..|.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 566778888999888888999999999988888889999999999999998744 3444445555554433333344
Q ss_pred HHhCCChHHHHHHHc--cCChHHHHHHHHHHHHccCCch-HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471 274 IVGHGGVRPLIEICQ--TGDSVSQAAAACTLKNISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~--~~~~~~~~~a~~aL~nLa~~~~-~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~ 350 (534)
.+...+|.....+.. ..+..+-..|+..|-++..++. .+..+.++--+..++..++..+. .++..|...+..+...
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~-~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ-RIQTCAIALLNALFRK 243 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch-HHHHHHHHHHHHHHhh
Confidence 333444444444442 2244556788888888887664 66667778889999999988886 7888887777776653
Q ss_pred -ChHHHHHHHh
Q 009471 351 -NENLRRSVVS 360 (534)
Q Consensus 351 -~~~~~~~i~~ 360 (534)
.+..|..+.+
T Consensus 244 a~~~~R~~~~~ 254 (713)
T KOG2999|consen 244 APDDKRFEMAK 254 (713)
T ss_pred CChHHHHHHHH
Confidence 3334444443
No 193
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.76 E-value=1.5 Score=41.77 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHcc
Q 009471 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES 248 (534)
Q Consensus 171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~ 248 (534)
...|+..|.-++--.|..+..+.+..++..|+.+|+. ..+.++..++.+|..+--+.+ +...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4456667766666677787888888999999999955 458999999988888766554 88888899999999999998
Q ss_pred C--CHHHHHHHHHHHHHhh
Q 009471 249 G--STVGKEKATISLQRLS 265 (534)
Q Consensus 249 ~--~~~~~~~A~~~L~~Ls 265 (534)
. +.+++-....+|+-.-
T Consensus 188 ~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccHHHhHHHHHHHHHHH
Confidence 5 6667777777776543
No 194
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.72 E-value=4.1 Score=45.61 Aligned_cols=186 Identities=12% Similarity=0.123 Sum_probs=121.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQL-LTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~l-L~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
.+.+-..+.+.+...|.+|+..+...+.... ........|.+..+++. +.+.+..+...|+.+|..++..-..-..=.
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3445556678899999999999999987544 11111122334444443 344567888899999999987543222223
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-c-hHH
Q 009471 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-P-EVR 312 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~-~~~ 312 (534)
..++.+.++.-+.+-...+++.+..++.........-. .++.+..++++++|..+..+...+...... + ...
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~------~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSK------MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHH------HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 45678889999988888888877777766655222111 237778889999999988766666444332 1 111
Q ss_pred HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
..-.-.+.++.++....+.+. +||..+.+++..+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~-~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDK-DVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCCcH-HHHHHHHHHHHHHHH
Confidence 111224567777777777776 899999888887765
No 195
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.63 E-value=4.8 Score=39.79 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=106.8
Q ss_pred chHHHHH-HHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hh
Q 009471 154 GNTRELL-ARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CE 230 (534)
Q Consensus 154 ~~i~~Ll-~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~ 230 (534)
..+..++ ..+++.++..|..|+..|.-.+--+.+... ..++.+.+.++.++..++..|+.++..+..... .-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555655 677899999999999998887655553322 346778888877789999999999999865322 11
Q ss_pred H-------HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHH-Hc---cCChHHHHHHH
Q 009471 231 N-------WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI-CQ---TGDSVSQAAAA 299 (534)
Q Consensus 231 ~-------~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~l-l~---~~~~~~~~~a~ 299 (534)
. .......+..+...+++.+++++..|+..++.|-....... ....+..|+-+ .. .+++.++..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 12234578888889999999999999999999854322111 00111333322 22 12344554444
Q ss_pred HHHHHccCCchHHHHHHhhCcHHHHHHHhhcC
Q 009471 300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG 331 (534)
Q Consensus 300 ~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~ 331 (534)
..+-..+......+....+..++.+-.+.+..
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 44555555443334444566677766666543
No 196
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=16 Score=41.88 Aligned_cols=211 Identities=18% Similarity=0.133 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHHHHh--CCChHHHHHHHccCChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHH
Q 009471 249 GSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVM 324 (534)
Q Consensus 249 ~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L 324 (534)
.+..+|..+...|..++..++......+ ......|..-+++.....+...+.+|..|-... +.+..+. .. |+-+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~-I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KL-IPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HH-HHHH
Confidence 4778999999999999887433222211 111233344444455566666666666665422 4443332 22 3333
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcC------ChHHHHHhh----cCCchHHHH--HHHHHHhhcCcc
Q 009471 325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG------GIRSLLAYL----DGPLPQESA--VGALRNLVGSVS 392 (534)
Q Consensus 325 ~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g------~l~~L~~~L----~~~~~~~~a--~~aL~~La~~~~ 392 (534)
+=.+++.+. ..+.++..+|.+|+.. ....+.| .+..++..+ -++..+..+ +-++..+..+
T Consensus 744 IL~~Ke~n~-~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e-- 815 (1176)
T KOG1248|consen 744 ILSLKEVNV-KARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE-- 815 (1176)
T ss_pred HHhcccccH-HHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence 333355554 7899999999999830 0111111 233444433 223333333 3333444331
Q ss_pred HHHHHh----cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471 393 QEVLIS----LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS 467 (534)
Q Consensus 393 ~~~l~~----~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~ 467 (534)
...+++ .+++..+.-+|.++++++...|+..+..++.. ++..-.-.....++.+..+.+.....++......|-.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 112222 34566666677899999999999999998865 4433332233468888888887778888887777776
Q ss_pred hc
Q 009471 468 LV 469 (534)
Q Consensus 468 L~ 469 (534)
|.
T Consensus 896 Li 897 (1176)
T KOG1248|consen 896 LI 897 (1176)
T ss_pred HH
Confidence 65
No 197
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.02 E-value=0.86 Score=34.39 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCChhHHHHHHhcC
Q 009471 377 QESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSAEMKKLVGEAG 441 (534)
Q Consensus 377 ~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~la~~~~~~~~i~~~g 441 (534)
...|++++++++. +.....+.+.++++.++++... +...+|-.+..+|.-++++.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4578899999988 4444555567899999998864 457899999999999999988888887665
No 198
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.02 E-value=12 Score=37.65 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=112.0
Q ss_pred HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc-CChHHHHHHHhc--CChHHHHHhhcC------C---------
Q 009471 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVSE--GGIRSLLAYLDG------P--------- 374 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~~--g~l~~L~~~L~~------~--------- 374 (534)
+.+.+.. +..+...+..... .....++..|..++. ........+++. -..+.+-+++.. .
T Consensus 51 ~~iL~~~-~k~lyr~L~~~~~-~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSSKP-SLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHH-HHHHHHHhCcCcH-HHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 3444433 7778888877775 678899999999998 555655566542 123344444421 1
Q ss_pred chHHHHHHHHHHhhc---CccHHHHH-hcCcHHHHHHHHhcCCHHHHHHHHHHHHH-hcCC----hhHHHHHHhcCchHH
Q 009471 375 LPQESAVGALRNLVG---SVSQEVLI-SLGFFPRLVHVLKAGSLGAQQAAASALCR-VCTS----AEMKKLVGEAGCTPL 445 (534)
Q Consensus 375 ~~~~~a~~aL~~La~---~~~~~~l~-~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~-la~~----~~~~~~i~~~g~v~~ 445 (534)
++|...+..+..+.. +.....++ ..+.+..+++-|...++++....+.++.. +..+ ...+-.+.....+..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 778888888888877 23334444 46678889999988888999999988885 4444 345556666778999
Q ss_pred HHHhhcCCCh----HHHHHHHHHHHHhcCCC
Q 009471 446 LIKLLEAKPN----SVREVAAQAISSLVTLP 472 (534)
Q Consensus 446 Lv~ll~~~~~----~v~~~A~~aL~~L~~~~ 472 (534)
|..+....++ .+++.+-+.|..++.++
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 9998876666 89999999999998664
No 199
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.96 E-value=4.8 Score=41.89 Aligned_cols=186 Identities=12% Similarity=0.126 Sum_probs=114.9
Q ss_pred hHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcC--hHhHHHHhcCCcHHHHHHHh-cCCCHHHHHHHHHHHHHhh----cC
Q 009471 155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKED--EKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLA----ES 226 (534)
Q Consensus 155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~--~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La----~~ 226 (534)
.+..++.... ..++..+..++..+..++.+- ++... ..+..+..-. ...+...+..+..++.-++ ..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 5666666654 445777888888888888652 22111 2233333333 2333455555555554432 22
Q ss_pred -CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhh--------HHHHHh----CCChHHHHHHHccCCh
Q 009471 227 -GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEM--------ARAIVG----HGGVRPLIEICQTGDS 292 (534)
Q Consensus 227 -~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~--------~~~l~~----~g~i~~Lv~ll~~~~~ 292 (534)
.+.-. ..+..|+.++.+ +.+...++..+.-+..+ ++. .+.+.+ ...+|.|++-.+..+.
T Consensus 265 ~~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 265 GHPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred CCchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 22211 236777788876 66788889998888776 332 112222 2235667776676666
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471 293 VSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 293 ~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
..+..-..+|.++..+-.....+.+ ...+|.+++-|..++. +++..++.+|..+...++.
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~-~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDA-DVLLSSLETLKMILEEAPE 398 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHcCHH
Confidence 6788888888888774332223333 5688999999987776 7999999999999986644
No 200
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=5.7 Score=43.79 Aligned_cols=216 Identities=13% Similarity=0.108 Sum_probs=127.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHH
Q 009471 243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVS 322 (534)
Q Consensus 243 v~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~ 322 (534)
+..+.++...++..+...|..+..+.+.+..+...+.+......+++.|+-+--.|...+..|+.. ..+.+++
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~ 805 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILP 805 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence 334445566688889999999988776666777788899999999999998888888866666642 3356677
Q ss_pred HHHHH-hhcCCC--hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCch--HHHHHHHHHHhhc-Cc--cHH
Q 009471 323 VMIKL-LDCGIL--LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVG-SV--SQE 394 (534)
Q Consensus 323 ~L~~l-l~~~~~--~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~--~~~a~~aL~~La~-~~--~~~ 394 (534)
.+.+. ...... .+.+...-+++.++...-.+.-.... .-.+...+..+++|+. |..+++.+++||. .. ..+
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 77663 322211 13333444666666542222111111 1234455555666654 8899999999997 21 111
Q ss_pred HHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC--hhHHHHHH--hcCchHHHHHhhc-CCChHHHHHHHHHHHHh
Q 009471 395 VLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS--AEMKKLVG--EAGCTPLLIKLLE-AKPNSVREVAAQAISSL 468 (534)
Q Consensus 395 ~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~--~~~~~~i~--~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L 468 (534)
.+. .++..++.+.+ ++++-+++.|+-.+..+-.+ .+.-..+. .......+..+.. ..+..++..|..++-.+
T Consensus 885 ~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 885 FFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 111 23344444444 45688999999999888764 22222110 1223444444444 34455666666666544
No 201
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.65 E-value=1.8 Score=39.36 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHhCCChHHHHHHHcc---------CChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHH
Q 009471 271 ARAIVGHGGVRPLIEICQT---------GDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYA 340 (534)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~---------~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a 340 (534)
...|++.||+..|+.++.. .+......++.+|+.+.........+.. .+++..++..+.+.+. .++..+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~-~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNI-KTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSH-HHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCH-HHHHHH
Confidence 5578889999999998853 3457788899999999998876777776 8899999999988776 899999
Q ss_pred HHHHHHHc
Q 009471 341 AECLQNLT 348 (534)
Q Consensus 341 ~~~L~~La 348 (534)
+..|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 202
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.52 E-value=24 Score=38.40 Aligned_cols=131 Identities=17% Similarity=0.075 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc
Q 009471 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT 289 (534)
Q Consensus 210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~ 289 (534)
..+..-+++.+..+-..+..-+ .-.|.+..+++-.++.+..++...+..|..+.........-+-.+....+..-+.+
T Consensus 60 dRIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 4555555566655544333222 23456777778888889999999999999987643333333334455777777888
Q ss_pred CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471 290 GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN 346 (534)
Q Consensus 290 ~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~ 346 (534)
..|.+|..|+.+|..+-..+.. -+..++..+..+++.++..+||..++.+|.+
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~d----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKD----EECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCC----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 8999999999999998854311 0234567788888776666888877655443
No 203
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.37 E-value=23 Score=37.93 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=94.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHHhhC
Q 009471 242 LIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEG 319 (534)
Q Consensus 242 Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g 319 (534)
++...+ ++...+..|+..+.....+ ++....- +..++.+|.+.|..+|..|...|..+|.+ ++....+
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---- 97 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---- 97 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH----
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH----
Confidence 333333 5788999999999998776 4444432 38999999999999999999999999985 3555554
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-----CCchHHHHHHHHHHhhc---C-
Q 009471 320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-----GPLPQESAVGALRNLVG---S- 390 (534)
Q Consensus 320 ~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-----~~~~~~~a~~aL~~La~---~- 390 (534)
+..|+++|..++. .....+-.+|..+-..++.. .+..++..+. +..+|+.++..|..=.. .
T Consensus 98 -aDvL~QlL~tdd~-~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 98 -ADVLVQLLQTDDP-VELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp -HHHHHHHTT---H-HHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred -HHHHHHHHhcccH-HHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 6689999987775 34444555555555433322 2344444332 24478888877754333 1
Q ss_pred ccH-HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 391 VSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 391 ~~~-~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
... ..=.+.-++..+.++|.+-..+--.....+|..+-.
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 111 111223345555566655444333444555555544
No 204
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.21 E-value=2.6 Score=47.06 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=119.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471 283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG 362 (534)
Q Consensus 283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g 362 (534)
+-.-+.+.+|.-+..++..++.....+.........|.+..++.....+..-.+...++.+|..|+...... ..-+..+
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~ 336 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKN 336 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHh
Confidence 333445678888888888888776644301111114445555555543333367888999999998754332 1223346
Q ss_pred ChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-h---hHHHH
Q 009471 363 GIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A---EMKKL 436 (534)
Q Consensus 363 ~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~---~~~~~ 436 (534)
..+.++..+.+ +.+++.+..++..++.... ...+.+.+..++.+++|.++......+...... . ..+..
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t 411 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNSTP-----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKET 411 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhh
Confidence 67888887765 6677777777766664111 233578888899999999998877666665533 2 33444
Q ss_pred HHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 437 VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 437 i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
+ .+.+|.++....+.+.+||..|.+++.-+.
T Consensus 412 ~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 412 V--KTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred H--HHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 4 567999999999999999999999998885
No 205
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.18 E-value=38 Score=40.13 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=95.1
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh-cChhhHHHH
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAI 274 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls-~~~~~~~~l 274 (534)
+.+..++..|..+...+|..|+++|..+.+.++. .+....+-..+-.-+.+....+|+.|...++... .+++....+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 4467777788877799999999999999987761 1111222334445566778889999999998754 345554444
Q ss_pred HhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh---cCCChhHHHHHHHHHHHHcc
Q 009471 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~---~~~~~~v~~~a~~~L~~La~ 349 (534)
. ..+.+-..+....+|..+...++.++.....-..+ +...+++++ ++.. .++..+..++.++-.
T Consensus 894 Y-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg-~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 894 Y-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEG-NIKKLVRETFLKLWF 960 (1692)
T ss_pred H-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchh-HHHHHHHHHHHHHhc
Confidence 3 45555566778889999999999998743332333 333444443 3332 378888888888876
No 206
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.09 E-value=1.3 Score=47.41 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=77.9
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHH
Q 009471 399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV 478 (534)
Q Consensus 399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 478 (534)
.+++..+++-..+++..|+...+..|..+.....-...-.-.+....|..-+.+..+.||..|..+|+.+=.++.+
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD---- 159 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----
Confidence 3455666666678889999999999999986422222222234566666677788899999999999999544444
Q ss_pred HhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 479 KRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 479 ~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+...+..++.+++.+|+.++|..+...+..=.+.
T Consensus 160 -ee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsT 194 (892)
T KOG2025|consen 160 -EECPVVNLLKDLIQNDPSDEVRRAALSNISVDNST 194 (892)
T ss_pred -CcccHHHHHHHHHhcCCcHHHHHHHHHhhccCccc
Confidence 22345677888999888888988877666544433
No 207
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=23 Score=37.52 Aligned_cols=150 Identities=17% Similarity=0.130 Sum_probs=93.0
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh-hcC--CchHHHHHHHHHHhhcCccHHHHHhcC
Q 009471 324 MIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVGSVSQEVLISLG 400 (534)
Q Consensus 324 L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~-L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~ 400 (534)
+-+++.+.++ -.|.+.+..+..--.+.. +.+++..++.+ +.+ ++++..|+.+|+-+|.. +..
T Consensus 521 I~ell~d~ds-~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-------D~~ 585 (926)
T COG5116 521 INELLYDKDS-ILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-------DRD 585 (926)
T ss_pred HHHHhcCchH-HhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEec-------Ccc
Confidence 3344555554 456665554443111111 23556777776 443 78999999999999873 233
Q ss_pred cHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC-CCcchHHH
Q 009471 401 FFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREV 478 (534)
Q Consensus 401 ~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~ 478 (534)
.++..+++| .+.++.|+...+.+|+-.|.+...+ -++..|-.++++...-+|..|+.++.-+.. +.+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 566677777 5678899999999998777552211 135566677888888899999999988763 22222222
Q ss_pred HhhCCCHHHHHhhcCCCC
Q 009471 479 KRDDKSVPNLVQLLDPSP 496 (534)
Q Consensus 479 ~~~~~~v~~Lv~lL~~~~ 496 (534)
+. +....+.+.+....
T Consensus 660 v~--~I~k~f~~vI~~Kh 675 (926)
T COG5116 660 VK--RIIKKFNRVIVDKH 675 (926)
T ss_pred HH--HHHHHHHHHHhhhh
Confidence 22 34455666665553
No 208
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.74 E-value=1.1 Score=41.87 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhhc-CccHHHHHhcCc-------HHHHHHHH-hcCCHHHHHHHHHHHHHhcCC-hhHHHHH-HhcCchH
Q 009471 376 PQESAVGALRNLVG-SVSQEVLISLGF-------FPRLVHVL-KAGSLGAQQAAASALCRVCTS-AEMKKLV-GEAGCTP 444 (534)
Q Consensus 376 ~~~~a~~aL~~La~-~~~~~~l~~~~~-------i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~-~~~~~~i-~~~g~v~ 444 (534)
.|..|+.+|..|+- ..+.+.++.++- +..|++++ ..+++..++.|...|.+|+.. +...+.+ .+.++|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 58999999999998 666665655443 44455555 356788999999999999976 5555455 5568999
Q ss_pred HHHHhhcCCChHH
Q 009471 445 LLIKLLEAKPNSV 457 (534)
Q Consensus 445 ~Lv~ll~~~~~~v 457 (534)
.|+.++++.....
T Consensus 220 ~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 220 HLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998554433
No 209
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=2.9 Score=40.63 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=100.2
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (534)
...+...+..|.+.+.+.+..++..+..|....++....... ..+-.+++-++.....+-..|+.++..+...-.. .
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~ 163 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S 163 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence 345677888899999999999999999998766654443332 4566777778888888999999999888765432 1
Q ss_pred HHhcCCHHHHHH-HHcc---CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471 233 LVSEGVLPPLIR-LVES---GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (534)
Q Consensus 233 l~~~g~i~~Lv~-lL~~---~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (534)
+.+ -+..++. ++.. .+..+++.|-.+|..|..+-.....+ +.|...+++..+.++..++.+..+.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L------~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLL------RKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHH------HHHHHHHhhhchhhhhhhhcccccc
Confidence 111 2344443 3333 36678999999999998765544444 6777778888888888877766554
No 210
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.44 E-value=35 Score=38.50 Aligned_cols=348 Identities=12% Similarity=0.088 Sum_probs=176.4
Q ss_pred CHHHHHHHHHHHHHHh---hcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHH
Q 009471 167 HLEAKHKALDSLVEAM---KEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPL 242 (534)
Q Consensus 167 ~~~~~~~A~~~L~~l~---~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~L 242 (534)
++..+.-|+..+.+++ .....++ ...+.=.++.+...++++-..+|..|++++..++.-+ +....+ ..++...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence 4555666777666654 3333332 2222233666666778888899999999999999533 222222 2346666
Q ss_pred HHHHc-cCCHHHHHHHHHHHHHhhcChhhH-HHHHh--CCChHHHHHHHccCChHHHHHHHHHH-HHccCCchHHHHHHh
Q 009471 243 IRLVE-SGSTVGKEKATISLQRLSMSAEMA-RAIVG--HGGVRPLIEICQTGDSVSQAAAACTL-KNISAVPEVRQMLAE 317 (534)
Q Consensus 243 v~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~-~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL-~nLa~~~~~~~~i~e 317 (534)
.+.|. +.+..++..|+-+|..+-.+.+.. ..+.. .+.++.|+.+.+.-+.+....+...+ +..+. +....-.+
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fse--ElsPfA~e 585 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSE--ELSPFAVE 585 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--hhchhHHH
Confidence 66666 678889999999999987765543 33433 34456666666654444333333322 12221 22111111
Q ss_pred --hCcHHHHHHHhhc--CC---ChhHHHHHHHHHHHHcc------CChHHHHHHHhcCChHHHHHhhcC--CchHHHHHH
Q 009471 318 --EGIVSVMIKLLDC--GI---LLGSKEYAAECLQNLTA------SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVG 382 (534)
Q Consensus 318 --~g~i~~L~~ll~~--~~---~~~v~~~a~~~L~~La~------~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~ 382 (534)
......+.+++.. +. +.+-...|.++|..+.+ ..+..-+. .+...++.+-.++++ .+.-+.++.
T Consensus 586 L~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~e 664 (1010)
T KOG1991|consen 586 LCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLE 664 (1010)
T ss_pred HHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2334455566652 11 11334556666666554 11111100 112223334444444 456677777
Q ss_pred HHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHH-HHhcCchHHHHHhhcCC--Ch
Q 009471 383 ALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKL-VGEAGCTPLLIKLLEAK--PN 455 (534)
Q Consensus 383 aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~-i~~~g~v~~Lv~ll~~~--~~ 455 (534)
...+++. ++....+. +..+.+.+.++....+--...+-+|.|+... +...+. ....-......+++.+. ..
T Consensus 665 i~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D 742 (1010)
T KOG1991|consen 665 IVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGED 742 (1010)
T ss_pred HHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCch
Confidence 7777765 22222222 3466677777666667777788888887643 211111 00011233344444442 23
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHH-----hhcCCCCchhHHHHHHHHHH-hhchhHHHHHHHHhhccc
Q 009471 456 SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV-----QLLDPSPQNTAKKYAVACLA-SLSPSARKLLERLERGRL 527 (534)
Q Consensus 456 ~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv-----~lL~~~~~~~~k~~a~~~L~-~L~~~~k~~~~~l~~~~~ 527 (534)
.-.+.|+..+-.+...-.+. +. ..++..+ ++.........+.+++.+.. +|--..+..+.-|.+-.+
T Consensus 743 ~d~~~a~kLle~iiL~~kg~---~d--q~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~ 815 (1010)
T KOG1991|consen 743 SDCESACKLLEVIILNCKGL---LD--QYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGF 815 (1010)
T ss_pred HHHHHHHHHHHHHHHHhcCc---Hh--hHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCC
Confidence 33456777777776443331 10 0123222 22332223356666665443 344445555555554433
No 211
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.02 E-value=47 Score=39.46 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=92.5
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhH
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN 231 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~ 231 (534)
..++..++..|.......|.+|+++|..+...++.. +.....-.....-+.++...||+.|+..++...... +.-.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 345666677777777888999999999999887732 222233333444455667899999999999775543 3222
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc---cCChHHHHHHHHHHHHccC
Q 009471 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ---TGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~nLa~ 307 (534)
+. ...+..-+.+....+|.++...++.++...+.-..+. ...+++++ ++...++..++.++.++=.
T Consensus 892 qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 22 4455555566778899999999999987654433332 33444443 3333367777777766643
No 212
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.00 E-value=4.5 Score=46.09 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=104.9
Q ss_pred cHHHHHHHhcC----CCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhh
Q 009471 197 NIAALVQLLTA----TSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEM 270 (534)
Q Consensus 197 ~v~~Lv~lL~~----~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~ 270 (534)
..|.+++.++. ++|++|..|.-+|+.+..-+ .... .-++.|+.+|+ ++++.++..+..+++.|+...++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 46777777754 46999999999999986543 2222 23899999998 67899999999999999875444
Q ss_pred H-HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471 271 A-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (534)
Q Consensus 271 ~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La 348 (534)
- ... -+.|...+++.++.+|..|..+|.+|-.++ |+. .|.+..+...+.+++. +++.-|-.....|+
T Consensus 995 lie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~-~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNA-EISDLAKSFFKELS 1063 (1251)
T ss_pred ccchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcH-HHHHHHHHHHHHhh
Confidence 2 222 267788899999999999999999987643 333 7889999999998887 78877776666666
Q ss_pred c
Q 009471 349 A 349 (534)
Q Consensus 349 ~ 349 (534)
.
T Consensus 1064 ~ 1064 (1251)
T KOG0414|consen 1064 S 1064 (1251)
T ss_pred h
Confidence 5
No 213
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=89.60 E-value=4.4 Score=44.97 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=93.1
Q ss_pred CChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-----hh
Q 009471 362 GGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-----AE 432 (534)
Q Consensus 362 g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-----~~ 432 (534)
..+|.+++.+.. ...+..-+.+|.+.-.+.-.+.+.. ...+|.|++.|.-.|..+|..+..++.-+... .+
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 457777776654 3456666777777766222233322 34578888888999999999988888776532 33
Q ss_pred HHHHHHhcCchHHHHHhhcCCC---hHHHHHHHHHHHHhcC-CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHH
Q 009471 433 MKKLVGEAGCTPLLIKLLEAKP---NSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVAC 507 (534)
Q Consensus 433 ~~~~i~~~g~v~~Lv~ll~~~~---~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~ 507 (534)
+... .+|.+..+-.+.+ ..+|+.|..+|..|.. .|.+.-...+ ...+..|...|++. ...+|+.|+.+
T Consensus 947 ~~~T-----lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 947 HLST-----LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred HHhH-----HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcH-HHHHHHHHHHH
Confidence 4433 4888888877555 5689999999999987 4555444444 35667777888775 33577777654
No 214
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=89.50 E-value=1.3 Score=48.88 Aligned_cols=147 Identities=20% Similarity=0.154 Sum_probs=100.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (534)
.+|.+++...+.+...|..=+..|.+++..-|.....---....|.|++.|+-+|..+|-.+..++..+....+.-..--
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~ 947 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH 947 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH
Confidence 45666666666666777777888888887666532111112568888889999999999999999988766554211111
Q ss_pred hcCCHHHHHHHHccCC---HHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471 235 SEGVLPPLIRLVESGS---TVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (534)
Q Consensus 235 ~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (534)
-.-.+|.++.+=.+.+ +.+++.|..+|..|+.. |.+.-.-....+++.|...|.++..-+|..|..+
T Consensus 948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1235666666666654 67899999999999984 4443344445667888888888777777777655
No 215
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.09 E-value=3.1 Score=47.31 Aligned_cols=136 Identities=17% Similarity=0.198 Sum_probs=101.8
Q ss_pred hHHHHHHHc----cCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471 280 VRPLIEICQ----TGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (534)
Q Consensus 280 i~~Lv~ll~----~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (534)
.|.+++.|+ .++|+++.+|.-+|+.+..-+ +.+. .-++.|+..++..+.+.+|-+++-+++.++...+..
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 466667774 358999999999999887633 3333 248889999974444478999999999999877654
Q ss_pred HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
-+. .-+.|...|.+ +.+|..|+-+|.+|..+ ..+--.|.++.+..+|.++++.++..|-.....|+
T Consensus 996 ie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 996 IEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN---DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 332 24567777766 67899999999999874 33445688999999999999999888885555554
No 216
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=6.8 Score=42.48 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=103.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHH-hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhc
Q 009471 283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL-LDCGILLGSKEYAAECLQNLTASNENLRRSVVSE 361 (534)
Q Consensus 283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~l-l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~ 361 (534)
+-+++.+.||-+|....-++.---.+. ...++|..|++. +.+.++ +|+..|+.+|+-++..+++.
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nD-DVrRaAVialGFVl~~dp~~------- 589 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVND-DVRRAAVIALGFVLFRDPEQ------- 589 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccch-HHHHHHHHHheeeEecChhh-------
Confidence 346677778888876655543211111 124567777777 456666 89999999999999877765
Q ss_pred CChHHHHHhhc---CCchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhHHH
Q 009471 362 GGIRSLLAYLD---GPLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC--TSAEMKK 435 (534)
Q Consensus 362 g~l~~L~~~L~---~~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la--~~~~~~~ 435 (534)
.+..+.+|. +|.+|..+..+|+-.|. ....+ .+..|-.+..+...-|++-|+.++.-+. +++....
T Consensus 590 --~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 590 --LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred --chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 456666663 38899999999999987 33332 1333334445556678999988888765 2344444
Q ss_pred HHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471 436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (534)
Q Consensus 436 ~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~ 466 (534)
.+ .++.+.+.+.+.+++++....--.+|.
T Consensus 662 kv--~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 662 KV--NGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred hH--HHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44 466778888888777665444333333
No 217
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.53 E-value=4.3 Score=42.76 Aligned_cols=128 Identities=15% Similarity=0.158 Sum_probs=85.2
Q ss_pred CCchHHHHHHHHHHhhc---CccHH-HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHH
Q 009471 373 GPLPQESAVGALRNLVG---SVSQE-VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIK 448 (534)
Q Consensus 373 ~~~~~~~a~~aL~~La~---~~~~~-~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ 448 (534)
++..-...+..+..+.. +..++ .=.-.+++..+++-+.+++..|+...+.+|+.+.....-.....-.|.+..|.+
T Consensus 60 ~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~ 139 (885)
T COG5218 60 NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSE 139 (885)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 35555555555555443 22222 111245667777777888999999999999998855222222333466777777
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHH
Q 009471 449 LLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAV 505 (534)
Q Consensus 449 ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~ 505 (534)
-+.+..+.+|..|..+|+++-....|-+..+ +..|+.+++.+|+.+++..|.
T Consensus 140 R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~-----~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 140 RLFDREKAVRREAVKVLCYYQEMELNEENRI-----VNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred HHhcchHHHHHHHHHHHHHHHhccCChHHHH-----HHHHHHHHhcCcHHHHHHHHH
Confidence 7778889999999999999976566644433 346778888887777877654
No 218
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=88.45 E-value=5.2 Score=43.27 Aligned_cols=224 Identities=17% Similarity=0.133 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH
Q 009471 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV 246 (534)
Q Consensus 167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL 246 (534)
|+..|..-+..|.++..+-|. .+.-....|.|+..+... .+.-..+-.+..++...+. ..+....++.|..++
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~---rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~--~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPA---RVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQ--NEFGPKMLPALKPIY 358 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCH---HHHHHhhhhHHHHHhccc--cccccccchhhhhhhccch--hhhhhhhhHHHHHHh
Confidence 444555555555555544332 222335566666655332 1222222223333332221 112234577777777
Q ss_pred ccCCHHHHHHHHHHHHHh------hcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCc
Q 009471 247 ESGSTVGKEKATISLQRL------SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGI 320 (534)
Q Consensus 247 ~~~~~~~~~~A~~~L~~L------s~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~ 320 (534)
+..++ ++.-+.++.++ ...++.... +++.|..-+.+.+..+|..++..+-.++..-+ ...+..-+
T Consensus 359 ~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~-----IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~i 429 (700)
T KOG2137|consen 359 SASDP--KQALLFILENMDLLKEKTPPEEVKEK-----ILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAI 429 (700)
T ss_pred ccCCc--ccchhhHHhhHHHHHhhCChHHHHHH-----HHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHH
Confidence 74211 22222333333 222333333 35788888888899999999999988876433 34455667
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh-----cCCchHHHHHHHHHHhhc-CccHH
Q 009471 321 VSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-----DGPLPQESAVGALRNLVG-SVSQE 394 (534)
Q Consensus 321 i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L-----~~~~~~~~a~~aL~~La~-~~~~~ 394 (534)
+|.+.++....+...++.+++.|+..+.. .+-...+++.+..++ .+|.+.-..+.+..++.. .....
T Consensus 430 lP~l~~l~~~tt~~~vkvn~L~c~~~l~q-------~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ 502 (700)
T KOG2137|consen 430 LPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-------RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGV 502 (700)
T ss_pred HHHhhcchhcccchHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccce
Confidence 88888886555555889999999999883 222333344444443 236667777777777766 22223
Q ss_pred HHHhcCcHHHHHHHHhcCC
Q 009471 395 VLISLGFFPRLVHVLKAGS 413 (534)
Q Consensus 395 ~l~~~~~i~~Lv~lL~~~~ 413 (534)
.++.+.++|.++.+...+.
T Consensus 503 ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 503 EVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred eeehhhhhhhhhhhhhccc
Confidence 4555667777777765554
No 219
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.24 E-value=5 Score=44.49 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=111.0
Q ss_pred HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhHHHHhcCCHH--HHHHHHccCCH-H
Q 009471 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWLVSEGVLP--PLIRLVESGST-V 252 (534)
Q Consensus 177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~--~Lv~lL~~~~~-~ 252 (534)
.|.....+++++.+.+++.||+..+.+.++.-+ .+++..++..+.+++...+.+..+....-+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 677888899999999999999999999998654 7899999999999998776443332222222 33334444333 6
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHH-HHHHhhcC
Q 009471 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSV-MIKLLDCG 331 (534)
Q Consensus 253 ~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~-L~~ll~~~ 331 (534)
.-..++..|..+..+.+. ....+. -+.+...-..++.. .+.....+.-...+.. +..++...
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~-----------r~~~~~~l~e~i~~---~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVF-----------RNSVNELLVEAISR---WLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccc-----------hHHHHHHHHHHhhc---cCccceeehhhhhcchhHHHHhccc
Confidence 677788888777665332 000000 01111111111111 1111111111222223 55566544
Q ss_pred CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc
Q 009471 332 ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372 (534)
Q Consensus 332 ~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~ 372 (534)
.....+..|++++.+++..++.+...+.+.++++.+.+.-.
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 43378999999999999988888888888888888776643
No 220
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.68 E-value=2 Score=47.14 Aligned_cols=163 Identities=16% Similarity=0.219 Sum_probs=107.8
Q ss_pred hhHHHHHhCCChHHHHHHHccC--------ChHHHHHHHHHHHHccCCchHHHHHHhh------C--cHHHHHHHhh---
Q 009471 269 EMARAIVGHGGVRPLIEICQTG--------DSVSQAAAACTLKNISAVPEVRQMLAEE------G--IVSVMIKLLD--- 329 (534)
Q Consensus 269 ~~~~~l~~~g~i~~Lv~ll~~~--------~~~~~~~a~~aL~nLa~~~~~~~~i~e~------g--~i~~L~~ll~--- 329 (534)
+.+..+.+.+++..++.++... -.++..+|+.+|.-+...|+++..++.. . ++..+++.-.
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 3456678899999999998753 2356688999999999999998888652 1 3444444432
Q ss_pred cCCChhHHHHHHHHHHHHccCChHHHHHHHhcC----ChHHHHHhhc-C--CchHHHHHHHHHHhhcCccHHHHHhcCcH
Q 009471 330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEG----GIRSLLAYLD-G--PLPQESAVGALRNLVGSVSQEVLISLGFF 402 (534)
Q Consensus 330 ~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g----~l~~L~~~L~-~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i 402 (534)
+..+++++..|+.+|.|+....+.+|...+..- +-+.. .+. + ....++.+.-+| ..+....+|
T Consensus 672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l~~mw--------~~Vr~ndGI 741 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVLRQMW--------EAVRGNDGI 741 (1516)
T ss_pred cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHHHHHH--------HHHhcCccH
Confidence 222348899999999999987767664443210 00000 010 0 111233333333 334457789
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHHhcCChhHHHHHHhcC
Q 009471 403 PRLVHVLKAGSL-----GAQQAAASALCRVCTSAEMKKLVGEAG 441 (534)
Q Consensus 403 ~~Lv~lL~~~~~-----~v~~~A~~aL~~la~~~~~~~~i~~~g 441 (534)
..|+++|+...| .++..|+.+|.-|+++++.++.+....
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 999999986653 789999999999999999998885544
No 221
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.90 E-value=1.9 Score=40.31 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHhcC-------CHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhh-HHHHH-hCCCh
Q 009471 211 RIREKTVTVICSLAESGSCENWLVSEG-------VLPPLIRLVES-GSTVGKEKATISLQRLSMSAEM-ARAIV-GHGGV 280 (534)
Q Consensus 211 ~v~~~A~~~L~~La~~~~~~~~l~~~g-------~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~-~~~l~-~~g~i 280 (534)
.-|..|+++|++|+-.+.|.+.+...+ .+..|++++.. ++...++.|...|.+|+..++. ++.++ +.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 458999999999998887776666554 46667777765 4788999999999999987665 44555 48889
Q ss_pred HHHHHHHccCCh
Q 009471 281 RPLIEICQTGDS 292 (534)
Q Consensus 281 ~~Lv~ll~~~~~ 292 (534)
..|+.++.+.+.
T Consensus 219 ~~Li~FiE~a~~ 230 (257)
T PF12031_consen 219 SHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999876433
No 222
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=86.57 E-value=34 Score=33.53 Aligned_cols=217 Identities=15% Similarity=0.182 Sum_probs=138.7
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hH---HHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHH
Q 009471 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV---RQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQ 345 (534)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~---~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~ 345 (534)
..+...|....|+..+...+.+.+..+..+..|+-... +. .....+ ...+..++.--.. .. ++-..+-..+.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~-~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TP-EIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-ch-HHHHHHHHHHH
Confidence 34667888899999999888888988888887776532 22 222222 3334444333111 22 45555555566
Q ss_pred HHccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhc-C-ccHHHHHhc---Cc-HHHHHHHHhcCCHHHH
Q 009471 346 NLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVG-S-VSQEVLISL---GF-FPRLVHVLKAGSLGAQ 417 (534)
Q Consensus 346 ~La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~-~-~~~~~l~~~---~~-i~~Lv~lL~~~~~~v~ 417 (534)
.... .+...+.+....-......+++-| ++...|..+...+.. . ....++... .+ .+.--.++++++.-.+
T Consensus 151 Ecir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 151 ECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 6554 566666777777777777777654 345556666666554 1 122223222 22 3335667889999999
Q ss_pred HHHHHHHHHhcCC----hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcch---HHHHhhCCCHHHHHh
Q 009471 418 QAAASALCRVCTS----AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC---REVKRDDKSVPNLVQ 490 (534)
Q Consensus 418 ~~A~~aL~~la~~----~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~---~~~~~~~~~v~~Lv~ 490 (534)
..+...++.+-.+ ....+++.+..-++.++.+|+.++..+|-.|-........++.-. ..+.. ..=+.|+.
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~--~Nr~KLl~ 307 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILV--RNRPKLLE 307 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHH--hCcHHHHH
Confidence 9999999998754 345566665577999999999999999999999998887654322 22222 23355665
Q ss_pred hcC
Q 009471 491 LLD 493 (534)
Q Consensus 491 lL~ 493 (534)
+++
T Consensus 308 ~l~ 310 (342)
T KOG1566|consen 308 LLH 310 (342)
T ss_pred HHH
Confidence 553
No 223
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.19 E-value=6.5 Score=35.03 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=74.5
Q ss_pred hhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCC--cHHHHHHHhcCCC-HHHHHHHHHHHHHhhc
Q 009471 149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRS--NIAALVQLLTATS-PRIREKTVTVICSLAE 225 (534)
Q Consensus 149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g--~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~ 225 (534)
......++..+...|++.+.+.|-.++.-+...+..++. ..+.+.+ -+..++..|+.++ +.+.+.++.+|..+..
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 455666778888888999999998888777777765532 2333333 3888899998876 6788888888887754
Q ss_pred C----CchhHHHHhc---CCHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009471 226 S----GSCENWLVSE---GVLPPLIRLVESGSTVGKEKATISLQRLSM 266 (534)
Q Consensus 226 ~----~~~~~~l~~~---g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 266 (534)
. ++..+.+... +.++.++.++++ ....+.+..+|..+-.
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3 2333333333 345555566654 4456667777776643
No 224
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.63 E-value=5.5 Score=36.86 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC-----ChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHH
Q 009471 255 EKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG-----DSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKL 327 (534)
Q Consensus 255 ~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-----~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~l 327 (534)
..|...|.-++.+++.+..|.+...--.+..++... -.-.|..+++++..|..++ +....+....++|.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 466777888889999998888765533333444322 2346778999999998855 667777778999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHH-
Q 009471 328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLV- 406 (534)
Q Consensus 328 l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv- 406 (534)
++.++. -.+.-++.++..+-.++...+ .+|.++..+.. + ..++..++
T Consensus 198 me~gSE-lSktvaifI~qkil~dDvGLq-----------------------YiCqT~eRFyA-------v-~~vln~mv~ 245 (315)
T COG5209 198 MELGSE-LSKTVAIFIFQKILGDDVGLQ-----------------------YICQTFERFYA-------V-NLVLNSMVS 245 (315)
T ss_pred HHhhhH-HHHHHHHHHHHHHhccchhHH-----------------------HHHHHHHHHHH-------H-HHHHHHHHH
Confidence 998886 567777777777665433321 12222222211 0 01112222
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCChhHHHHH
Q 009471 407 HVLKAGSLGAQQAAASALCRVCTSAEMKKLV 437 (534)
Q Consensus 407 ~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i 437 (534)
++...+...+.+.+.++-.+++..++.|..+
T Consensus 246 qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 246 QLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 2334556667777777777777776666655
No 225
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.29 E-value=3.7 Score=35.70 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=62.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHhcCC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~ 471 (534)
.+..|.+-|.++++.++..|+..|-.+..+ ..+...+...+++..|++++.. .+..|+..++..+...+..
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 466777778899999999999999999965 7788999999999999999986 7899999999999988733
No 226
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.80 E-value=2.1 Score=41.48 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcC--CHHHHHHHHcc----CCHHHHHHHHHHHHHhhcChhhH
Q 009471 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG--VLPPLIRLVES----GSTVGKEKATISLQRLSMSAEMA 271 (534)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g--~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~~~~~ 271 (534)
...+...+..=..+-+--++..++-++.+++....+...+ +...+..++.. .++..+-.+.+++.|+..++..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3444444443333446666777777777766555554443 35555555544 36677889999999999988888
Q ss_pred HHHHhCC--ChHHHHHHHccC----ChHHHHHHHHHHHHccCCc-hHH-HHHHhhCcHHHHHHHh-hcCCChhHHHHHHH
Q 009471 272 RAIVGHG--GVRPLIEICQTG----DSVSQAAAACTLKNISAVP-EVR-QMLAEEGIVSVMIKLL-DCGILLGSKEYAAE 342 (534)
Q Consensus 272 ~~l~~~g--~i~~Lv~ll~~~----~~~~~~~a~~aL~nLa~~~-~~~-~~i~e~g~i~~L~~ll-~~~~~~~v~~~a~~ 342 (534)
..+..+. .+...+..+... +..++..++..+.|++..- ..+ ..-.....+..+.+.+ ....+.++.+.++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 7776643 344444444443 6778889999999998521 111 0001122355566633 33244589999999
Q ss_pred HHHHHccCChHHHH
Q 009471 343 CLQNLTASNENLRR 356 (534)
Q Consensus 343 ~L~~La~~~~~~~~ 356 (534)
+|+++...++....
T Consensus 225 AlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHCCSHHHHH
T ss_pred HHHHHhccChhHHH
Confidence 99999976655543
No 227
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.70 E-value=41 Score=36.56 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=98.1
Q ss_pred HHHHHHHhcC----CCHHHHHHHHHHHHHhh-cCCchhHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhh-
Q 009471 198 IAALVQLLTA----TSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEM- 270 (534)
Q Consensus 198 v~~Lv~lL~~----~~~~v~~~A~~~L~~La-~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~- 270 (534)
-|...+...+ +|+.++..|.-.|..+- -+.+.. ..-+|.++..++ +++|.++..|...|..++....+
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 3344445544 57899999888887773 333322 123799999998 67889999999888887643222
Q ss_pred HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (534)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~ 350 (534)
.... -..|.+-+.+.+..++..|..++.+|--... +.-.|-++.+..+|.+++. ++...|-..+..++..
T Consensus 969 ~de~-----t~yLyrrL~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda-~Isdmar~fft~~a~K 1038 (1128)
T COG5098 969 ADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDA-EISDMARHFFTQIAKK 1038 (1128)
T ss_pred hHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcc-hHHHHHHHHHHHHHhc
Confidence 2222 2566777888999999999999988754321 1126778889999998887 7888898888888874
Q ss_pred C
Q 009471 351 N 351 (534)
Q Consensus 351 ~ 351 (534)
+
T Consensus 1039 d 1039 (1128)
T COG5098 1039 D 1039 (1128)
T ss_pred c
Confidence 3
No 228
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=84.69 E-value=14 Score=39.94 Aligned_cols=253 Identities=12% Similarity=0.123 Sum_probs=147.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCC
Q 009471 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGV 238 (534)
Q Consensus 159 Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~ 238 (534)
.+..++..+.+.|.+=...|.+-+..-+ ..++....++.|+..+..++ --...+.-+..+...-+..+ .+.++
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l~~~p---e~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i 331 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRLDNFP---EEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRI 331 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccch
Confidence 3444566677777776666666444333 23344455666766665554 11111222222222111111 45678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhh
Q 009471 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE 318 (534)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~ 318 (534)
++.|+++.+..+..+|-.-..-+.+...+ --..+...-.++.+..-+.+.++.+|...+.++..|+.-=. ..-...
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--~~~Ln~ 407 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--KRNLNG 407 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--hhhhcH
Confidence 99999999999888775444333332221 12334455667888888899999999999888877764111 111122
Q ss_pred CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHH
Q 009471 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEV 395 (534)
Q Consensus 319 g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~ 395 (534)
..+..+..+-.+.+. .++.+..-||+.++... +..| +.-.+..+.+.+++ ...|..++.++......-. ..
T Consensus 408 Ellr~~ar~q~d~~~-~irtntticlgki~~~l~~~~R----~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-~~ 481 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHG-GIRTNTTICLGKIAPHLAASVR----KRVLASAFTRALKDPFVPARKAGVLALAATQEYFD-QS 481 (690)
T ss_pred HHHHHHHhhCccccC-cccccceeeecccccccchhhh----ccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-hh
Confidence 234555555444554 68888888888888753 2222 22223445555666 4567777777776665211 11
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 396 LISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 396 l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
=+...+++.+.-+.-+.+..++..|-.++..+-
T Consensus 482 ~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 482 EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 123456777777777778888888877776654
No 229
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=84.66 E-value=68 Score=35.30 Aligned_cols=304 Identities=15% Similarity=0.145 Sum_probs=159.7
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--------CCHHHHHHHHHHHHHhhc
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--------TSPRIREKTVTVICSLAE 225 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--------~~~~v~~~A~~~L~~La~ 225 (534)
.+++..+..-..|..... .|+..+.......++. .+ .|.++.++..|.. .++.-.+-|++.+.++..
T Consensus 371 eyirry~df~d~g~spdl-aal~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s 445 (970)
T COG5656 371 EYIRRYYDFFDNGLSPDL-AALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS 445 (970)
T ss_pred HHHHHhcchhcCCCChhH-HHHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence 455655555555543322 3344444443332221 12 2788999998832 124455677777777765
Q ss_pred --CC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471 226 --SG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (534)
Q Consensus 226 --~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (534)
.. +-..-+.+.=+++.++..+++....++.+||..+..+..+ +++.... .+.+.....+++++-.++..|+-+
T Consensus 446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill---~aye~t~ncl~nn~lpv~ieAalA 522 (970)
T COG5656 446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILL---EAYENTHNCLKNNHLPVMIEAALA 522 (970)
T ss_pred HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHH---HHHHHHHHHHhcCCcchhhhHHHH
Confidence 22 2222333444677777888898899999999999999654 2322221 223455566777888888888888
Q ss_pred HHHccCCchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC-hHHHHHHH--hcCChHHHHHh----hc
Q 009471 302 LKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN-ENLRRSVV--SEGGIRSLLAY----LD 372 (534)
Q Consensus 302 L~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~-~~~~~~i~--~~g~l~~L~~~----L~ 372 (534)
|.-+-.+.+....+.+ .+.++.++.+-..-+. ++...+ +-.+.... ++...... -...+++.+++ ++
T Consensus 523 lq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei-D~LS~v---Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~e 598 (970)
T COG5656 523 LQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI-DPLSMV---MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLE 598 (970)
T ss_pred HHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc-hHHHHH---HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHc
Confidence 8877776666666654 3334444444332222 222222 22222211 11110000 01122333333 22
Q ss_pred C--------CchHHHHHHHHHHhhc----CccHHHH---HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHH
Q 009471 373 G--------PLPQESAVGALRNLVG----SVSQEVL---ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKL 436 (534)
Q Consensus 373 ~--------~~~~~~a~~aL~~La~----~~~~~~l---~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~ 436 (534)
+ ++-+..|.+.|..+.+ -++...+ .+....|.+--.+.+.-.+.-.+|+..+-+..-. .+.-..
T Consensus 599 ns~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pi 678 (970)
T COG5656 599 NSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPI 678 (970)
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhh
Confidence 2 2236677888877765 1222222 2334455555555666677888888877776533 222222
Q ss_pred HHhcCchHHHHHhhcCCC-hHHHHHHHHHHHHhcCC
Q 009471 437 VGEAGCTPLLIKLLEAKP-NSVREVAAQAISSLVTL 471 (534)
Q Consensus 437 i~~~g~v~~Lv~ll~~~~-~~v~~~A~~aL~~L~~~ 471 (534)
+ -|..+.+.+++.+.. ..--+.++.++.++...
T Consensus 679 m--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfity 712 (970)
T COG5656 679 M--WGIFELLLNLLIDEITAVYSEEVADALDNFITY 712 (970)
T ss_pred h--hHHHHHHHhcccccchhhhHHHHHHHHHHHHHh
Confidence 2 234444445554443 24456677777777643
No 230
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=84.61 E-value=43 Score=32.89 Aligned_cols=211 Identities=12% Similarity=0.133 Sum_probs=135.9
Q ss_pred HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHH----HHH-hcCChHHHHHhhcC-CchHHHHHHHHHH
Q 009471 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR----SVV-SEGGIRSLLAYLDG-PLPQESAVGALRN 386 (534)
Q Consensus 313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~----~i~-~~g~l~~L~~~L~~-~~~~~~a~~aL~~ 386 (534)
..+.+.|.+..++.-+..... +.+..+..+..++-......|. .+. +...+..|+.--.+ ++..-.|-..++.
T Consensus 73 qef~~~~~l~~lI~~l~~l~f-E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEF-ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccc-hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 456678999999999988887 7788888887777653322221 111 12233333333222 4445555566666
Q ss_pred hhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcC----chHHHHHhhcCCChHHHHH
Q 009471 387 LVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAG----CTPLLIKLLEAKPNSVREV 460 (534)
Q Consensus 387 La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g----~v~~Lv~ll~~~~~~v~~~ 460 (534)
..+ ..-.+.+....-+.....+++.+.-++..-|..+...+.. +.-....+.... +.+.--.++.+++--++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 666 4445566777788889999998888888888888777663 333333333332 2445777888999999999
Q ss_pred HHHHHHHhcCCCcchHHHHh---hCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHHhhc
Q 009471 461 AAQAISSLVTLPQNCREVKR---DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERLERG 525 (534)
Q Consensus 461 A~~aL~~L~~~~~~~~~~~~---~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~ 525 (534)
+..+|..+..+.+|.....+ +...+..+..+|... ...++-.|.....-...+ .+.++..|.+|
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N 301 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVANPNKPQPVRDILVRN 301 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcCCCCCchHHHHHHhC
Confidence 99999999988888765444 445666777777765 334666666655554444 55555555543
No 231
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=84.38 E-value=38 Score=32.10 Aligned_cols=136 Identities=19% Similarity=0.144 Sum_probs=84.6
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 009471 199 AALVQ-LLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG 276 (534)
Q Consensus 199 ~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~ 276 (534)
+.|+. +-+..+++.+...+..|..++.++ .+...+ +..+..+.+.+....+..+.+.+..+-...+...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34444 445567999999999999999888 544443 6667777777777776677777777755433322
Q ss_pred CCChHHHHHH--Hc--------cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHh-hcCCChhHHHHHHHHHH
Q 009471 277 HGGVRPLIEI--CQ--------TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAAECLQ 345 (534)
Q Consensus 277 ~g~i~~Lv~l--l~--------~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll-~~~~~~~v~~~a~~~L~ 345 (534)
+.+..++.. ++ +...+.....+.+++.++..... .-...++.+..++ ++.++ .++..++.+|.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~-~~~alale~l~ 147 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDE-VAQALALEALA 147 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccH-HHHHHHHHHHH
Confidence 122333333 11 11233444445666666653322 1133577777788 55554 78999999999
Q ss_pred HHcc
Q 009471 346 NLTA 349 (534)
Q Consensus 346 ~La~ 349 (534)
.++.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 9994
No 232
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=84.37 E-value=41 Score=32.50 Aligned_cols=211 Identities=20% Similarity=0.190 Sum_probs=120.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhhcChh----hHHH
Q 009471 200 ALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES--GSTVGKEKATISLQRLSMSAE----MARA 273 (534)
Q Consensus 200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~----~~~~ 273 (534)
.|-..|.++++.+|..|+..|..+...-+.. . ....-+..|+....+ .+......+..++..|..... ....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHH
Confidence 3445688889999999999999886654311 0 112225666665544 244444444555555543221 1111
Q ss_pred HHhCCChHHHHHHH--ccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 274 IVGHGGVRPLIEIC--QTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 274 l~~~g~i~~Lv~ll--~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
+ +..+..-. +......|..+...|..+.... ...+.+ .+.+..+++.+..+.++.-...+...+..+..
T Consensus 81 i-----~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 81 I-----LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred H-----HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1 12222211 1234456788888888887643 222222 45778888888766655666666677766665
Q ss_pred CChHHHHHHHhcCChHHHHHhhcC------------C--chHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHH
Q 009471 350 SNENLRRSVVSEGGIRSLLAYLDG------------P--LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLG 415 (534)
Q Consensus 350 ~~~~~~~~i~~~g~l~~L~~~L~~------------~--~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 415 (534)
..+. ....+.+.+.+.- | -+++.-...|.+.-.. ......-.+|.|++-|.+..+.
T Consensus 154 ~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s---~~~fa~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 154 EFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS---TPLFAPFAFPLLLEKLDSTSPS 223 (262)
T ss_pred hccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC---cHhhHHHHHHHHHHHHcCCCcH
Confidence 3331 2334445554421 1 1344444444443331 1112344689999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 009471 416 AQQAAASALCRVCT 429 (534)
Q Consensus 416 v~~~A~~aL~~la~ 429 (534)
++..++.+|.....
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 233
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.37 E-value=29 Score=39.46 Aligned_cols=278 Identities=17% Similarity=0.194 Sum_probs=162.3
Q ss_pred HhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc---CCchhHHHHhcCCH
Q 009471 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE---SGSCENWLVSEGVL 239 (534)
Q Consensus 163 L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~---~~~~~~~l~~~g~i 239 (534)
|++.+.+.+.+.+..+..+...+++|....-+.--++.++.-+..-...+|...+.+|..-.. .-++++ +
T Consensus 476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqE-------L 548 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQE-------L 548 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHH-------H
Confidence 467788888889999999988888887777676778888877766555666655555433221 112333 2
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHh-hcChhhHHHHHhCCChHHHHHHHccC----ChHHHHHHHHH--HHHccCCchH
Q 009471 240 PPLIRLVESG-STVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTG----DSVSQAAAACT--LKNISAVPEV 311 (534)
Q Consensus 240 ~~Lv~lL~~~-~~~~~~~A~~~L~~L-s~~~~~~~~l~~~g~i~~Lv~ll~~~----~~~~~~~a~~a--L~nLa~~~~~ 311 (534)
-.|+-+|+.+ +...+.........| +.+...+..+.+-|.++.|-..++.. .|+ +.....- =+|.+. +..
T Consensus 549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qysgvsehydrnpss-~sf 626 (2799)
T KOG1788|consen 549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYSGVSEHYDRNPSS-PSF 626 (2799)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhhhHHHHhhcCCCC-chh
Confidence 2455566654 334444444454554 44455577788888888887666531 010 0000000 011111 122
Q ss_pred HHHHHhhCcHHHHHHHhhcCCCh-hHH------HHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHH
Q 009471 312 RQMLAEEGIVSVMIKLLDCGILL-GSK------EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGAL 384 (534)
Q Consensus 312 ~~~i~e~g~i~~L~~ll~~~~~~-~v~------~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL 384 (534)
++.+.....+-.--.+.+++... .+. .-.-.||..+-..+.++...+.+..|+..++.++-+++-|...+..+
T Consensus 627 ~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSslLriv 706 (2799)
T KOG1788|consen 627 KQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIV 706 (2799)
T ss_pred hhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHH
Confidence 22222222222222333333220 111 12345666777777888877888899999999887777787888888
Q ss_pred HHhhcCccHHHHHhcCcHHHHHHHHhcCC------------HHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhc
Q 009471 385 RNLVGSVSQEVLISLGFFPRLVHVLKAGS------------LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE 451 (534)
Q Consensus 385 ~~La~~~~~~~l~~~~~i~~Lv~lL~~~~------------~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~ 451 (534)
.+|...+.. + +....+..+++.|+++- .........+++++.. +...++.++++++...|...+.
T Consensus 707 scLitvdpk-q-vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 707 SCLITVDPK-Q-VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred HHHhccCcc-c-ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence 887762111 1 12234567777777631 1345556677777764 4677888899998888877764
No 234
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.32 E-value=2.3 Score=36.63 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=60.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~------~~~~v~~~A~~aL~~L~ 469 (534)
.+..+.+-|+++++.++..|+..|-.+..+ ..+...+...+++..|++++.. .+..|+...+..+....
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 466777888999999999999999999865 7888999999999999999963 46899999999998886
No 235
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=84.10 E-value=12 Score=33.14 Aligned_cols=145 Identities=18% Similarity=0.205 Sum_probs=85.9
Q ss_pred hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHH
Q 009471 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLI 397 (534)
Q Consensus 318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~ 397 (534)
...++.|+++++.+....+|..++.+|+.|..-++...+.+..... .-...-.+...... .+.+.......+...
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~~~~~~~~~~~~---~l~~~~~~~~~ee~y 83 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKSSENSNDESTDI---SLPMMGISPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccccccccccchhh---HHhhccCCCchHHHH
Confidence 4567888999987766689999999999999877765543322111 00000000111111 111111112334555
Q ss_pred hcCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 398 SLGFFPRLVHVLKAGSL-GAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 398 ~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
....+..|+..|++.+- .-...+..++.++..+ ..+...+ ...+|.+++.++..+...++.-..-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55578888998877763 3344566666666533 3344444 446999999998776788888777776664
No 236
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.54 E-value=2.7 Score=33.40 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (534)
....+..|++..+..|..++..|.++..... ....--.+.+..+...|+++|+.+--.|+..|..|+...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 5666778888889999999999999997665 1111123667788889999999999999999999987664
No 237
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=83.40 E-value=7.5 Score=34.44 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=75.0
Q ss_pred cHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh-cChhhHHHH
Q 009471 197 NIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAI 274 (534)
Q Consensus 197 ~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls-~~~~~~~~l 274 (534)
..+.|+++|+.+. ..+|.+++++|+.|..-++.+......+.-..- -.+.+........ .....+ ..++.-..
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l-~~~~~~~~~ee~y~~- 85 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISL-PMMGISPSSEEYYPT- 85 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHH-hhccCCCchHHHHHH-
Confidence 4677888888764 999999999999998877755543322211000 0011111111111 001111 12222222
Q ss_pred HhCCChHHHHHHHccCChHHH-HHHHHHHHHccCCchHH-HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471 275 VGHGGVRPLIEICQTGDSVSQ-AAAACTLKNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (534)
Q Consensus 275 ~~~g~i~~Lv~ll~~~~~~~~-~~a~~aL~nLa~~~~~~-~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La 348 (534)
..+..|++++++++-... ..+..++.++-...+.+ ..+. ..++|.++..++..++ ..++....-|..|.
T Consensus 86 ---vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~-~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 86 ---VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPD-SLREFYFQQLADLV 156 (160)
T ss_pred ---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCH-HHHHHHHHHHHHHH
Confidence 245788888887543332 34556665555322111 1111 4578888888887766 66776555555443
No 238
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.26 E-value=3.1 Score=33.02 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=55.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (534)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~ 353 (534)
...+..+.++.+.+|.+++..|++|..... ...+...+++..+...++++++ -+-.+|+.+|..|+...+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~Ds-yVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDS-YVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHChH
Confidence 445566788889999999999999988655 2222336778888888988887 8999999999999975554
No 239
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.04 E-value=5.2 Score=34.21 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=60.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC---CChHHHHHHHHHHHHhcCC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA---KPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~---~~~~v~~~A~~aL~~L~~~ 471 (534)
.+..|.+-|+++++.++..|+..|-.+..+ ..+...+....++..|++++.. .++.++..+.+.+......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999999966 5688888888889999999974 4788999999999988743
No 240
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.41 E-value=10 Score=30.39 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhcChHhHHHHh-cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHc
Q 009471 169 EAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE 247 (534)
Q Consensus 169 ~~~~~A~~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~ 247 (534)
+.|..|+..+..-...+--....+. ..+.+..|++..+.++....+.++..+..+..++.....+.+-|++..|-++-.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566676665544333222222333 345677788888888877999999999999999988889989999988776666
Q ss_pred cCCHHHHHHHHHHH
Q 009471 248 SGSTVGKEKATISL 261 (534)
Q Consensus 248 ~~~~~~~~~A~~~L 261 (534)
.-++..+...-..+
T Consensus 82 ~~~~~~~~~id~il 95 (98)
T PF14726_consen 82 NVEPNLQAEIDEIL 95 (98)
T ss_pred cCCHHHHHHHHHHH
Confidence 55666665554444
No 241
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.34 E-value=13 Score=33.00 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=69.8
Q ss_pred hHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc---CChHH
Q 009471 280 VRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA---SNENL 354 (534)
Q Consensus 280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~---~~~~~ 354 (534)
+..+..++++.++..+-.++..+.-++...+ .+.+.+ ..-+..++.+++..++..+.+.++.+|..|.. +.+..
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 3567788888888888888888877776432 233333 34578888999887776778888888887764 34443
Q ss_pred HHHHHhc---CChHHHHHhhcCCchHHHHHHHHHHhhc
Q 009471 355 RRSVVSE---GGIRSLLAYLDGPLPQESAVGALRNLVG 389 (534)
Q Consensus 355 ~~~i~~~---g~l~~L~~~L~~~~~~~~a~~aL~~La~ 389 (534)
.+.+.-. +.++.++++++++...+.++.+|..+-.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3333321 2344445555544566667777666654
No 242
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=81.35 E-value=67 Score=32.78 Aligned_cols=137 Identities=11% Similarity=0.131 Sum_probs=84.7
Q ss_pred hhchHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc--C--------CCHHHHHHHHHHH
Q 009471 152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT--A--------TSPRIREKTVTVI 220 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~--~--------~~~~v~~~A~~~L 220 (534)
.......++..|..|. +..+...+.++.-|..+.. ....+.....+..|+.+.+ + ++.++...+..+|
T Consensus 43 r~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCL 121 (532)
T KOG4464|consen 43 RKELGERIFEVLENGEPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCL 121 (532)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHH
Confidence 3444555667777776 4446677777776665332 2222222233555555432 1 2458899999999
Q ss_pred HHhhcCCc-hhHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcC-hhhHH-HHHhCCChHHHHHHHcc
Q 009471 221 CSLAESGS-CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMS-AEMAR-AIVGHGGVRPLIEICQT 289 (534)
Q Consensus 221 ~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~-~~~~~-~l~~~g~i~~Lv~ll~~ 289 (534)
+|+..+++ .+....+......+++.+... ...++..-.+.|.-++.- .+.+. .+...+|++.+...+.+
T Consensus 122 cNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 122 CNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred HHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 99999887 677777777777776655432 233444555566666443 34444 45669999999988875
No 243
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.30 E-value=54 Score=35.02 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHH
Q 009471 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML 315 (534)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (534)
.|.+..+++-+++.+..++...+..|..++..-.........|.+..|.+-+-+..+.+|..|+.+|+.+-....+-+.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 4668888888889999999999999999876544444444566677777777778899999999999887653322221
Q ss_pred HhhCcHHHHHHHhhcCCChhHHHHHH
Q 009471 316 AEEGIVSVMIKLLDCGILLGSKEYAA 341 (534)
Q Consensus 316 ~e~g~i~~L~~ll~~~~~~~v~~~a~ 341 (534)
.....+..+++.++..+++..|+
T Consensus 169 ---~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 169 ---RIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHHH
Confidence 12345667776665547777654
No 244
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.67 E-value=6.8 Score=33.94 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=60.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~ 470 (534)
.+..|.+-|.++++.++..|+..|-.+..+ ..+...+.+.+++..|++++. ..++.|+..++..+...+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 467777788899999999999999999865 778889999999999999997 5678899999999998863
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.05 E-value=10 Score=32.88 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=60.4
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~ 226 (534)
..++.+..+|+++++.++..|+..|-.+.+.. ......+.+.+.+..|+++++. .++.|+..++..+...+..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 44788888999999999999998888888763 5566677788899999999874 5689999999999888753
No 246
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=79.64 E-value=23 Score=38.41 Aligned_cols=186 Identities=12% Similarity=0.109 Sum_probs=110.4
Q ss_pred hcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH
Q 009471 193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR 272 (534)
Q Consensus 193 ~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 272 (534)
...+.+|.++++.+..|..+|..-+.-+-.....- -..+++..++|.+..-+.+.++.+++....++..|+.--..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L--t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL--TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc--CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 34578999999999999888887776666555432 245667778999999999999999999999888876431111
Q ss_pred HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhC-cHHHHHHHhhcCCChhHHHHHHHHHHHHccCC
Q 009471 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEG-IVSVMIKLLDCGILLGSKEYAAECLQNLTASN 351 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g-~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~ 351 (534)
. .....++.|-++-.+++..+|....-+|..++..-... +..+ .+..+..-++++.. ..|..+...+.......
T Consensus 404 ~-Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~-paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 404 N-LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFV-PARKAGVLALAATQEYF 478 (690)
T ss_pred h-hcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCC-CchhhhhHHHhhccccc
Confidence 1 11111233333333456667777777777776542111 1222 23334445555554 56777777766655432
Q ss_pred hHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471 352 ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (534)
Q Consensus 352 ~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~ 389 (534)
+.. =+....++.+....-+ ..++..|..++..+-.
T Consensus 479 ~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 479 DQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred chh---hhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 221 1122334444444333 4456666666655543
No 247
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.22 E-value=58 Score=30.81 Aligned_cols=197 Identities=13% Similarity=0.055 Sum_probs=104.3
Q ss_pred HHHHH-HHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471 240 PPLIR-LVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (534)
Q Consensus 240 ~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (534)
+.|+. .-+..++..+.....+|..++.++ .+...++ +.|..+...++...+..+.+.+..+-...+-.-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~-----~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVL-----QTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHH-----HHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 44444 444568888999999999999887 5555553 777777777766665555666555544221110
Q ss_pred hCcHHHHHHHh--------hcCC-ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh-cC--CchHHHHHHHHH
Q 009471 318 EGIVSVMIKLL--------DCGI-LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-DG--PLPQESAVGALR 385 (534)
Q Consensus 318 ~g~i~~L~~ll--------~~~~-~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L-~~--~~~~~~a~~aL~ 385 (534)
+.+..++..+ .+++ ..+.......++..++...++.- ...++.+..++ ++ +..+..++.+|.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 2233333331 1111 11334444568888887666521 12366777777 44 557888999999
Q ss_pred HhhcCccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCC
Q 009471 386 NLVGSVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKP 454 (534)
Q Consensus 386 ~La~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~ 454 (534)
.||..+..+. ......+..-+.. ..|.+.+..+..+..+... +.-.........+..+-++....+
T Consensus 148 ~Lc~~~vvd~---~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 148 PLCEAEVVDF---YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHhhccH---HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 9995211111 1112223333322 2356666555555444432 111111122344555655555444
No 248
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=79.03 E-value=80 Score=32.26 Aligned_cols=158 Identities=20% Similarity=0.135 Sum_probs=84.9
Q ss_pred HHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHH-hhcC----Cch
Q 009471 302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA-YLDG----PLP 376 (534)
Q Consensus 302 L~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~-~L~~----~~~ 376 (534)
+-||+-.++ -..+-|..-.+-+-.-++..+....+..|+..+..++...+..-..++ .+.+..+++ +-.+ ..-
T Consensus 194 ~Pnl~~~e~-D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 194 FPNLCLREE-DEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp HHHHS--HH-HHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHH
T ss_pred cCccCCCHH-HHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHH
Confidence 345554433 233344444555545454333335688999999999863222111111 112222222 1112 245
Q ss_pred HHHHHHHHHHhhcCc-c-------------HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCc
Q 009471 377 QESAVGALRNLVGSV-S-------------QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGC 442 (534)
Q Consensus 377 ~~~a~~aL~~La~~~-~-------------~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~ 442 (534)
++.|+..++.|+... . ...+....++|-|. -=.+..|-++..|++.+..+-..- .+..+ .+.
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~ 347 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQI 347 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHH
Confidence 789999999999721 1 12222333334333 111445788999999999887531 11222 246
Q ss_pred hHHHHHhhcCCChHHHHHHHHHH
Q 009471 443 TPLLIKLLEAKPNSVREVAAQAI 465 (534)
Q Consensus 443 v~~Lv~ll~~~~~~v~~~A~~aL 465 (534)
+|.+++.+.+++.-|+.+|+.++
T Consensus 348 ~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 348 FPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhhhhhC
Confidence 99999999999999999998775
No 249
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=78.44 E-value=67 Score=31.04 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHccCCc--------hHHHHHHhhCcHHHHHHHhhcCC---ChhHHHHHHHHHHHHccCChHHHHHHHh
Q 009471 292 SVSQAAAACTLKNISAVP--------EVRQMLAEEGIVSVMIKLLDCGI---LLGSKEYAAECLQNLTASNENLRRSVVS 360 (534)
Q Consensus 292 ~~~~~~a~~aL~nLa~~~--------~~~~~i~e~g~i~~L~~ll~~~~---~~~v~~~a~~~L~~La~~~~~~~~~i~~ 360 (534)
+.....+...|..|+..+ +.+-.+.=...+|.++.-++++. .......++..|..+|....
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------- 147 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------- 147 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------
Confidence 334455666676666533 12333333456777777776666 11345566688888874211
Q ss_pred cCChHHHHHhh-cC--Cc---hHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHH
Q 009471 361 EGGIRSLLAYL-DG--PL---PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMK 434 (534)
Q Consensus 361 ~g~l~~L~~~L-~~--~~---~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~ 434 (534)
...+..++... ++ .+ ....++..|+.-..+. .+...+..|+.+|.++.+.++..++.+|..+-...+.+
T Consensus 148 ~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 148 LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 11233333322 22 12 2233333333322221 12345778999999999999999999999998775554
Q ss_pred HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 435 ~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
+. ...+.+.++.++++.+. ...|.++|-...
T Consensus 223 ~~-~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 223 SP-HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred CC-cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 44 34458999999998654 345666665554
No 250
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=21 Score=37.77 Aligned_cols=121 Identities=11% Similarity=0.115 Sum_probs=76.4
Q ss_pred CcHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHH
Q 009471 196 SNIAALVQL-LTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARA 273 (534)
Q Consensus 196 g~v~~Lv~l-L~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~ 273 (534)
|.|..+++. .++.+.++|..|+-+|+-+|-++. ..+...+++|.+ .+..++...+.+|.-.+.....+..
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a 622 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA 622 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH
Confidence 456666665 566789999999999998887664 235556666654 5888888888888877665443333
Q ss_pred HHhCCChHHHHHHHccCChHHHHHHHHHHHHccC--CchHHHHHHhhCcHHHHHHHhhcCC
Q 009471 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGI 332 (534)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~i~~L~~ll~~~~ 332 (534)
+ ..|-.+..+.+.-+|..|+-++.-+.. +++.-... .+++..+.+++.+.+
T Consensus 623 ~------diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 623 T------DILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred H------HHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence 2 455566667777788888777765543 22221111 234455555554433
No 251
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.20 E-value=68 Score=30.99 Aligned_cols=211 Identities=15% Similarity=0.137 Sum_probs=117.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCchhHHHHhcC
Q 009471 160 LARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGSCENWLVSEG 237 (534)
Q Consensus 160 l~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~~~~~l~~~g 237 (534)
=..|.++++..|.+|+..|..++..-+.. .....-|..|+.+..+ .|......++..+..|........ +
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~-----~ 76 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP-----E 76 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----h
Confidence 34677889999999999999998765533 2334456777766544 355555556777877775443111 1
Q ss_pred CHHHHHH-HHcc-----CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCch
Q 009471 238 VLPPLIR-LVES-----GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPE 310 (534)
Q Consensus 238 ~i~~Lv~-lL~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~ 310 (534)
....+++ +.+. -....|..+...+..+..+....-.-...+.+..++..+.. .||+-...+...+..+...=+
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1222222 2222 23446677777888776543221111113345667777764 488877777777766654222
Q ss_pred HHHHHHhhCcHHHHHHHhh-------cC---CChh-HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchH
Q 009471 311 VRQMLAEEGIVSVMIKLLD-------CG---ILLG-SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQ 377 (534)
Q Consensus 311 ~~~~i~e~g~i~~L~~ll~-------~~---~~~~-v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~ 377 (534)
. ....+.+.+.+. .+ ++.. .++.-...|.+.-..++.. ..-.++.|++-|++ +.++
T Consensus 157 ~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 157 I------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred c------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence 1 222333333332 11 1101 2444444444433333332 23347888888876 5678
Q ss_pred HHHHHHHHHhhc
Q 009471 378 ESAVGALRNLVG 389 (534)
Q Consensus 378 ~~a~~aL~~La~ 389 (534)
..++.+|..++.
T Consensus 226 ~D~L~tL~~c~~ 237 (262)
T PF14500_consen 226 LDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHH
Confidence 888888888776
No 252
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.66 E-value=96 Score=33.75 Aligned_cols=131 Identities=21% Similarity=0.133 Sum_probs=68.9
Q ss_pred HHHHHHHHccC----CHHHHHHHHHHHHHhhc----ChhhHHHHHhCCChHHHHHHHc----cCChHHHHHHHHHHHHcc
Q 009471 239 LPPLIRLVESG----STVGKEKATISLQRLSM----SAEMARAIVGHGGVRPLIEICQ----TGDSVSQAAAACTLKNIS 306 (534)
Q Consensus 239 i~~Lv~lL~~~----~~~~~~~A~~~L~~Ls~----~~~~~~~l~~~g~i~~Lv~ll~----~~~~~~~~~a~~aL~nLa 306 (534)
+..+..+++++ ...++..|.-++.+|.. +.+.+........++.+...|. .++..-+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 66777777753 44566666666665542 2222111111223355554443 345555667788888776
Q ss_pred CCchHHHHHHhhCcHHHHHHHhh-c-CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHHH
Q 009471 307 AVPEVRQMLAEEGIVSVMIKLLD-C-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESA 380 (534)
Q Consensus 307 ~~~~~~~~i~e~g~i~~L~~ll~-~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a 380 (534)
.. ..++.+..++. + ..+..+|..|+.+|..++...+.. +-+.++++..+ +++|..|
T Consensus 475 ~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 475 HP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred Ch----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHH
Confidence 52 23444555554 1 122367888888888887533321 12345555543 4566666
Q ss_pred HHHHHHh
Q 009471 381 VGALRNL 387 (534)
Q Consensus 381 ~~aL~~L 387 (534)
+.+|...
T Consensus 537 ~~~lm~t 543 (574)
T smart00638 537 VLVLMET 543 (574)
T ss_pred HHHHHhc
Confidence 6555443
No 253
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.16 E-value=69 Score=36.71 Aligned_cols=269 Identities=18% Similarity=0.164 Sum_probs=145.7
Q ss_pred HHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC-----
Q 009471 175 LDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG----- 249 (534)
Q Consensus 175 ~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~----- 249 (534)
-+.|..+++.+.+|.+.+.+..|+..++.++-+ .+-|...++++..|...++.. +...-+-.++..|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 457888889999999999988898888887733 455666666666665544310 1112256777888774
Q ss_pred ---CH----HHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHHHcc----------CChHHHHHHHHHHH-----Hcc
Q 009471 250 ---ST----VGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQT----------GDSVSQAAAACTLK-----NIS 306 (534)
Q Consensus 250 ---~~----~~~~~A~~~L~~Ls~-~~~~~~~l~~~g~i~~Lv~ll~~----------~~~~~~~~a~~aL~-----nLa 306 (534)
+. ........+++.+-. +-..++.+.+.+|...|...+.. +|.-+-..-...|. .++
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 11 123334455666543 34556678889998888776642 01000000011111 112
Q ss_pred CCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh----hcCCchH--HHH
Q 009471 307 AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY----LDGPLPQ--ESA 380 (534)
Q Consensus 307 ~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~----L~~~~~~--~~a 380 (534)
.++.|+..+...=.-+.+..+++...- ++. +.+ |+ ++..+.+. +-.|... ..|
T Consensus 818 enasNrmklhtvITsqtftsLLresgl-------------lcv-nle-r~------viqlllElalevlvppfLtSEsaA 876 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGL-------------LCV-NLE-RH------VIQLLLELALEVLVPPFLTSESAA 876 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhcc-------------cee-cch-HH------HHHHHHHHHHHhhCCchhhhhHHH
Confidence 223333333221112233333321110 000 000 00 11111111 1112111 122
Q ss_pred HHHHHHhhc------------CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHH
Q 009471 381 VGALRNLVG------------SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLI 447 (534)
Q Consensus 381 ~~aL~~La~------------~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv 447 (534)
+..+-.+-. ....+.+...|.+..+++.+-...+..|-+-...+..+++. +.+....-..|+++.|.
T Consensus 877 caeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvelll 956 (2799)
T KOG1788|consen 877 CAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLL 956 (2799)
T ss_pred HHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHH
Confidence 222222110 13456788899999999998888899999999999999974 67777777789999999
Q ss_pred Hhhc---CCChHHHHHHHHHHHHhc
Q 009471 448 KLLE---AKPNSVREVAAQAISSLV 469 (534)
Q Consensus 448 ~ll~---~~~~~v~~~A~~aL~~L~ 469 (534)
.++. +++...-..+..++.-|+
T Consensus 957 eIiypflsgsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 957 EIIYPFLSGSSPFLSHALKIVEMLG 981 (2799)
T ss_pred HHhhhhhcCCchHhhccHHHHHHHh
Confidence 9886 444445555555555444
No 254
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=77.08 E-value=41 Score=36.68 Aligned_cols=135 Identities=17% Similarity=0.182 Sum_probs=91.2
Q ss_pred hcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhhcChhhH
Q 009471 193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMA 271 (534)
Q Consensus 193 ~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~ 271 (534)
+.+..++.|..-+++.+..+|+.++..+..+++.-+ -..++.-++|.+-.+. +..+..++..++.++..+...-+..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888999999999999999999987655 2334445577776653 3457788889999998887322211
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCC
Q 009471 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI 332 (534)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~ 332 (534)
.+ ..-+.++.+..+..+|.+.....++..++.........+.-+.++|.++.+...+.
T Consensus 464 -~v--~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 464 -AV--LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred -Hh--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 11 12234455555677888888777777777664433234444677888888776555
No 255
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.05 E-value=17 Score=31.01 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=60.0
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH-hHHHHhcCCcHHHHHHHhcC---CCHHHHHHHHHHHHHhhcCC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTA---TSPRIREKTVTVICSLAESG 227 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~lL~~---~~~~v~~~A~~~L~~La~~~ 227 (534)
..++.+-.+|+++++.++..|+..|-.+...... ....+.....+..|++++.. .++.++..++..+...+..-
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4478888899999999999999999888876655 55566666888889999976 36899999999999887643
No 256
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=76.96 E-value=5 Score=34.99 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=60.5
Q ss_pred HHHHHhHHHHHhhhcccCccchhhHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009471 22 HAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEK 98 (534)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~f~~~~~~i~~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~c~~~~ 98 (534)
...+|...++.++..+..|+.-.+.+.+.++.+.-...++-....-.++|- ++.+..+.++|+++.+|+.+|...+
T Consensus 14 ~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~-~ee~e~L~~~L~~g~~LV~k~sk~~ 89 (147)
T PF05659_consen 14 VFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPR-QEEIERLKELLEKGKELVEKCSKVR 89 (147)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456778888999999999998888888888888777666554334455554 7999999999999999999996543
No 257
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=76.82 E-value=49 Score=36.35 Aligned_cols=169 Identities=21% Similarity=0.226 Sum_probs=90.8
Q ss_pred hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC------CchHHHHHHHHHHhhcC-
Q 009471 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVGS- 390 (534)
Q Consensus 318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~------~~~~~~a~~aL~~La~~- 390 (534)
...+..+.+++.++.. ....+...|..+......--. ..+..+..+++. +.++..|+-+++++...
T Consensus 394 ~~av~~i~~~I~~~~~--~~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKL--TDDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 3457777788876553 233344555555432211111 124445555543 34666777777777751
Q ss_pred -cc---------HHHHHhcCcHHHHHHHHh----cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCC---
Q 009471 391 -VS---------QEVLISLGFFPRLVHVLK----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--- 453 (534)
Q Consensus 391 -~~---------~~~l~~~~~i~~Lv~lL~----~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~--- 453 (534)
.. ........+++.+...+. .++..-+..++.+|+|+... ..++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhcccc
Confidence 11 111222345666666554 45667888899999998642 3567777777655
Q ss_pred ChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCC-CchhHHHHHHHHHHhh
Q 009471 454 PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASL 511 (534)
Q Consensus 454 ~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~k~~a~~~L~~L 511 (534)
+..+|..|.++|..++...++ .+ .+.|++++... .+.++|-.|...|+.-
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~---~v-----~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPE---KV-----REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HH---HH-----HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhcCcH---HH-----HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 677888888888877433221 12 24455555443 3446888887777664
No 258
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.53 E-value=15 Score=31.86 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=61.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH-hHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESG 227 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~ 227 (534)
..++.+..+|+++++.++..|+..|-.+.+.... ....+...+.+..|+++++. .++.|+...+..+...+..-
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 4577888899999999999999988888876554 55577777889999999988 67999999999999887543
No 259
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.44 E-value=15 Score=31.36 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=59.6
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcC
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAES 226 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~ 226 (534)
...++.+-.+|+++++.++..|+..|-.+.+.. +.....+...+.+..|+.+++... +.++..++..+...+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 344777888999999999999999888888764 456567777788999999988754 45999999999887653
No 260
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.05 E-value=18 Score=29.08 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=57.2
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471 398 SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (534)
Q Consensus 398 ~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~ 466 (534)
+..++..|++..+..++..+..+...+..+..++.....+.+-|++..|-++-..-++..+...-+.+-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 456788888888888878999999999999999999999999999999888887677777766655543
No 261
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.97 E-value=1.1e+02 Score=31.95 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=84.8
Q ss_pred cCCHHHHHHHH----ccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-
Q 009471 236 EGVLPPLIRLV----ESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP- 309 (534)
Q Consensus 236 ~g~i~~Lv~lL----~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~- 309 (534)
.|.+..++..+ .+++...+..|+..|.+++.. ++.++.....-....+-.++...+.+++..+..+|..+...-
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 35555555544 346778899999999999876 554443322112222334555567788888888877665422
Q ss_pred --hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh---cCChHHHHHhhcCCc-hHHHHHHH
Q 009471 310 --EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS---EGGIRSLLAYLDGPL-PQESAVGA 383 (534)
Q Consensus 310 --~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~---~g~l~~L~~~L~~~~-~~~~a~~a 383 (534)
+....+ -++.-.+..+..+.++ +.+.++...++.++.....-.+..+- .+...+++-.+.++. ....|++.
T Consensus 333 ~~~l~~~~--l~ialrlR~l~~se~~-~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 333 NDDLESYL--LNIALRLRTLFDSEDD-KMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred hcchhhhc--hhHHHHHHHHHHhcCh-hhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 222222 2233445566677776 88999888888877622211112221 112233333445543 34567777
Q ss_pred HHHhhc
Q 009471 384 LRNLVG 389 (534)
Q Consensus 384 L~~La~ 389 (534)
....|.
T Consensus 410 ~~~~c~ 415 (533)
T KOG2032|consen 410 ELRTCY 415 (533)
T ss_pred HHHhcC
Confidence 777766
No 262
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=74.77 E-value=13 Score=31.83 Aligned_cols=70 Identities=16% Similarity=0.078 Sum_probs=58.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCC--hHHHHHHHHHHHHhcC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKP--NSVREVAAQAISSLVT 470 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~--~~v~~~A~~aL~~L~~ 470 (534)
.+..|.+-|.++++.++..|+..|-.+..+ ..+...+.+.+++..|++++.... +.++..++..+.....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 466777778899999999999999999865 778899999999999999998543 3489999998888763
No 263
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=74.17 E-value=51 Score=36.19 Aligned_cols=189 Identities=17% Similarity=0.132 Sum_probs=102.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--chhHHHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhhc----
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESG--SCENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSM---- 266 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~---- 266 (534)
.+..+.+++......-. .|...|..+.... +..+ .+..+..++++ .++.++..|.-++..|..
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 47777788877542222 2444555554332 2322 25666666664 356677777777777643
Q ss_pred Ch------hhHHHHHhCCChHHHHHHHc----cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcC--CCh
Q 009471 267 SA------EMARAIVGHGGVRPLIEICQ----TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG--ILL 334 (534)
Q Consensus 267 ~~------~~~~~l~~~g~i~~Lv~ll~----~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~--~~~ 334 (534)
.. ...........++.|...|. .++..-+..++.+|+|+.. ...++.+..++... .+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 01111222344566666655 4566778889999999864 34677788877655 234
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHh
Q 009471 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK 410 (534)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~ 410 (534)
.+|..|+.+|..++...+... .+.++.++.+ +++|..|..+|...- + ....+..+...+.
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~~-P-------~~~~l~~i~~~l~ 602 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRCN-P-------SPSVLQRIAQSLW 602 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT-----------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhcC-C-------CHHHHHHHHHHHh
Confidence 789999999998876555322 3455666544 557777766655531 1 1224566666664
Q ss_pred cC-CHHHHH
Q 009471 411 AG-SLGAQQ 418 (534)
Q Consensus 411 ~~-~~~v~~ 418 (534)
.. +..|..
T Consensus 603 ~E~~~QV~s 611 (618)
T PF01347_consen 603 NEPSNQVAS 611 (618)
T ss_dssp T-S-HHHHH
T ss_pred hCchHHHHH
Confidence 43 344443
No 264
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.14 E-value=93 Score=34.72 Aligned_cols=241 Identities=17% Similarity=0.176 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHH
Q 009471 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRL 245 (534)
Q Consensus 171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~l 245 (534)
|.+-|+.+.-.+..-++....++. ..+...-.+|.+.. +.+.-.|...|..++....+...+...+++..+.+.
T Consensus 264 ka~ICEi~~LY~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~ 342 (960)
T KOG1992|consen 264 KAQICEIFNLYATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEK 342 (960)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHh
Confidence 334454444445544544443332 34444445555422 556678888888888888777777777777777765
Q ss_pred HccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHH-HHHHHHHHHccCCchHHHHHHhhCcHHHH
Q 009471 246 VESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQ-AAAACTLKNISAVPEVRQMLAEEGIVSVM 324 (534)
Q Consensus 246 L~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~-~~a~~aL~nLa~~~~~~~~i~e~g~i~~L 324 (534)
..-++...++. -..+.+.+-++..-+-+...|.+.| ..|+..++.|+.+-+....-+=.+.+..+
T Consensus 343 VvlpN~~lR~e--------------DeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~ 408 (960)
T KOG1992|consen 343 VVLPNLILREE--------------DEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRL 408 (960)
T ss_pred hcccccccchh--------------hHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 54443333221 1233444455666666766666665 56777777777643322211112223333
Q ss_pred HHHh-h--cCCChhHHHHHHHHHHHHccCChHHHHHHHhc----CChH----HHHHhhcC------CchHHHHHHHHHHh
Q 009471 325 IKLL-D--CGILLGSKEYAAECLQNLTASNENLRRSVVSE----GGIR----SLLAYLDG------PLPQESAVGALRNL 387 (534)
Q Consensus 325 ~~ll-~--~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~----g~l~----~L~~~L~~------~~~~~~a~~aL~~L 387 (534)
++-. . +++. .-+..+......++......+.-+... +++. .++.-|.+ |-++..++.-+..+
T Consensus 409 l~~y~~nPS~nW-k~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~F 487 (960)
T KOG1992|consen 409 LDQYSKNPSGNW-KKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTF 487 (960)
T ss_pred HHHhccCCCccc-cccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeee
Confidence 3322 1 2222 235556666666665322111111111 0111 11111111 33344444433333
Q ss_pred hcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
=..-..+.++ ..+|.++..|++++..|...|+.++-.+-.
T Consensus 488 R~ql~~~~lm--~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 488 RNQLGKEHLM--ALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred cccCChHHHH--HHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 2222333333 358999999999999999999999988753
No 265
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=73.98 E-value=14 Score=35.73 Aligned_cols=149 Identities=19% Similarity=0.151 Sum_probs=92.0
Q ss_pred hHHHHHhhcC--CchHHHHHHHHHHhhcC-ccHHHHHhcC--cHHHHHHHHhc----CCHHHHHHHHHHHHHhcCChhHH
Q 009471 364 IRSLLAYLDG--PLPQESAVGALRNLVGS-VSQEVLISLG--FFPRLVHVLKA----GSLGAQQAAASALCRVCTSAEMK 434 (534)
Q Consensus 364 l~~L~~~L~~--~~~~~~a~~aL~~La~~-~~~~~l~~~~--~i~~Lv~lL~~----~~~~v~~~A~~aL~~la~~~~~~ 434 (534)
...+.+.+.. ++.+-+++..++-++.. .....+...+ ....+..++.. ..+..+..++++++|+..++..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3445555554 56788999999998883 3333333322 24555555533 45788999999999999988888
Q ss_pred HHHHhcC--chHHHHHhhcCC----ChHHHHHHHHHHHHhcCCC-cch--HHHHhhCCCHHHHHh-hcCCCCchhHHHHH
Q 009471 435 KLVGEAG--CTPLLIKLLEAK----PNSVREVAAQAISSLVTLP-QNC--REVKRDDKSVPNLVQ-LLDPSPQNTAKKYA 504 (534)
Q Consensus 435 ~~i~~~g--~v~~Lv~ll~~~----~~~v~~~A~~aL~~L~~~~-~~~--~~~~~~~~~v~~Lv~-lL~~~~~~~~k~~a 504 (534)
..+.+.. .+...+..+... +..+|..++-.+.|++... .++ .+... ..+..+++ +.....+++.....
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~--~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS--ELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH--HHHHHHHHHCHCCHTSHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH--HHHHHHHHHhccccCCHHHHHHH
Confidence 7775543 233333333333 6889999999999997321 111 00000 13455555 33333456788899
Q ss_pred HHHHHhhchh
Q 009471 505 VACLASLSPS 514 (534)
Q Consensus 505 ~~~L~~L~~~ 514 (534)
+.+|.+|...
T Consensus 223 LvAlGtL~~~ 232 (268)
T PF08324_consen 223 LVALGTLLSS 232 (268)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhcc
Confidence 9999999866
No 266
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=1.5e+02 Score=32.84 Aligned_cols=316 Identities=16% Similarity=0.099 Sum_probs=156.3
Q ss_pred hhchHHHHHHHH-h-------cCCHHHHHHHHHHHHHHhh--cChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 009471 152 THGNTRELLARL-Q-------IGHLEAKHKALDSLVEAMK--EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVIC 221 (534)
Q Consensus 152 ~~~~i~~Ll~~L-~-------~~~~~~~~~A~~~L~~l~~--~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~ 221 (534)
....++-+...| + .++......|++.+.++.. ..+.....+.+.=.++.++..++++..-++..|+..+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 344455555555 2 1234445556665555543 22222233344334667777788888899999999999
Q ss_pred HhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh--CCChHHHHHHHccCChHHHHHHH
Q 009471 222 SLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQTGDSVSQAAAA 299 (534)
Q Consensus 222 ~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~ 299 (534)
.+..+-+ +.-.-..+.......+++.+-.++-.|+-++.-+-.+...-..+.+ .+.++.|+.+-..-+.+....+.
T Consensus 486 ~~eeDfk--d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 486 TIEEDFK--DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHHHhcc--cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 9954433 2222334566777788888888999999999988777655444443 33445555554444444444443
Q ss_pred HHHHH-ccC--C---chHHHHHHhhCcHHHHHHHhhcCCC-----hhHHHHHHHHHHHHccC--ChHHHHHHH---hcCC
Q 009471 300 CTLKN-ISA--V---PEVRQMLAEEGIVSVMIKLLDCGIL-----LGSKEYAAECLQNLTAS--NENLRRSVV---SEGG 363 (534)
Q Consensus 300 ~aL~n-La~--~---~~~~~~i~e~g~i~~L~~ll~~~~~-----~~v~~~a~~~L~~La~~--~~~~~~~i~---~~g~ 363 (534)
..+.. .+. . ++....+++ ..+.....++...++ .+-+..|.+.|..+.+- +=+++..+. ....
T Consensus 564 e~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 564 ESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 33321 111 0 011111111 122233333333211 13355666666665540 000111111 1111
Q ss_pred hHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCChhHHHHHH
Q 009471 364 IRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSL-GAQQAAASALCRVCTSAEMKKLVG 438 (534)
Q Consensus 364 l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~la~~~~~~~~i~ 438 (534)
.|.+-=++++ .+.-..|+..+.+.+.. ...+ +.-|+.+.+.+++.+... .--+.++.++.|+... .+..+.
T Consensus 643 ypvi~Filkn~i~dfy~Ea~dildg~tf~--skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfity--G~~ef~ 718 (970)
T COG5656 643 YPVISFILKNEISDFYQEALDILDGYTFM--SKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITY--GKTEFM 718 (970)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhHH--HHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHh--Cccccc
Confidence 2222222333 34556677777766641 0111 112334444444444443 5567788888888632 122222
Q ss_pred hcC-----chHHHHHhhcCCCh--HHHHHHHHHHHHhcCCCcc
Q 009471 439 EAG-----CTPLLIKLLEAKPN--SVREVAAQAISSLVTLPQN 474 (534)
Q Consensus 439 ~~g-----~v~~Lv~ll~~~~~--~v~~~A~~aL~~L~~~~~~ 474 (534)
+.| +...+...+.+++. +=...++..+-.++..-.+
T Consensus 719 ~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd 761 (970)
T COG5656 719 DAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD 761 (970)
T ss_pred cccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc
Confidence 222 22333333445444 4456677777777655444
No 267
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.34 E-value=27 Score=30.15 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=59.1
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~~ 226 (534)
..++.+..+|+++++.++..|+..|-.+.+.. +.....+...+.+..|++++.. .+..|+...+..+...+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999888888654 4466677778889999999963 4589999999999887753
No 268
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=72.09 E-value=1.9e+02 Score=33.17 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=70.0
Q ss_pred hHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 155 NTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 155 ~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
.+..+++++...+ ..++..|+..+.+...+.+.. ...+ .++-.|-.+.+++-..++..++..|..+-..++..-.
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~--~~fe-~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~- 652 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEA--SKFE-VVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFS- 652 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchh--hcch-hHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhh-
Confidence 4555667777444 455777888888877665532 2222 2355566667777788999999999888776653222
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009471 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls 265 (534)
....-+-.++.++.+.+..+.+.|...+..+.
T Consensus 653 ~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 653 LSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 23345667778888887778888877665554
No 269
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.01 E-value=1.5e+02 Score=32.15 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=107.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc----hhHHHHhcC---CHHHHHHHHccCCHHHHHHHHHHHHHhhcC--
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS----CENWLVSEG---VLPPLIRLVESGSTVGKEKATISLQRLSMS-- 267 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~~~l~~~g---~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-- 267 (534)
.+..|+++|+.-+.+-.+....-+.. .. .. ..+.+...| .+..+.+.+.++..... .++.++..+...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhh
Confidence 35667777776664433333333332 11 11 345555555 45555566666533222 233333333221
Q ss_pred hhhHHHHHhCCChHHHHHHHccC----ChHHHHHHHHHHHHccC----CchHHHHHHhhCcHHHHHHHhhc----CCChh
Q 009471 268 AEMARAIVGHGGVRPLIEICQTG----DSVSQAAAACTLKNISA----VPEVRQMLAEEGIVSVMIKLLDC----GILLG 335 (534)
Q Consensus 268 ~~~~~~l~~~g~i~~Lv~ll~~~----~~~~~~~a~~aL~nLa~----~~~~~~~i~e~g~i~~L~~ll~~----~~~~~ 335 (534)
.+....+ ..+..++.++ .+.++..++-++.++.. ..+.+...+-...++.+.+.+.. ++. +
T Consensus 389 ~Pt~~~l------~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~ 461 (574)
T smart00638 389 YPTEEIL------KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE-E 461 (574)
T ss_pred cCCHHHH------HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc-h
Confidence 1222222 6666777653 45566666666665543 22211112223356666665542 333 4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-C----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHh
Q 009471 336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK 410 (534)
Q Consensus 336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-~----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~ 410 (534)
.+...+.+|+|+..... ++.+..++. + +.+|..|+++|+.++... ...+.+.++.+..
T Consensus 462 ~~~~~LkaLGN~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~------p~~v~~~l~~i~~ 524 (574)
T smart00638 462 EIQLYLKALGNAGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD------PRKVQEVLLPIYL 524 (574)
T ss_pred heeeHHHhhhccCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC------chHHHHHHHHHHc
Confidence 56678888888775221 344555554 2 347899999999887511 1124566777664
Q ss_pred c--CCHHHHHHHHHHHHHh
Q 009471 411 A--GSLGAQQAAASALCRV 427 (534)
Q Consensus 411 ~--~~~~v~~~A~~aL~~l 427 (534)
+ .++++|..|..+|...
T Consensus 525 n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 525 NRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCCChHHHHHHHHHHHhc
Confidence 4 4578888888777664
No 270
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=71.61 E-value=1.2e+02 Score=30.88 Aligned_cols=127 Identities=18% Similarity=0.191 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHh-hcCC-ChhHHHHHHHHHHHHccCChHH------------HHH
Q 009471 294 SQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLL-DCGI-LLGSKEYAAECLQNLTASNENL------------RRS 357 (534)
Q Consensus 294 ~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll-~~~~-~~~v~~~a~~~L~~La~~~~~~------------~~~ 357 (534)
-|.+|+..|+.|+..- .+.+.. .+.+..++.-. .++. +...+..|+..+..++...... -..
T Consensus 227 rR~AA~dfl~~L~~~~--~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKF--EKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred cHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 4577888888887521 111111 12222222211 1222 2256888999999998743221 122
Q ss_pred HHhcCChHHHHHhhc-CCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009471 358 VVSEGGIRSLLAYLD-GPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424 (534)
Q Consensus 358 i~~~g~l~~L~~~L~-~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL 424 (534)
++..-++|-|..-.. .|-++..|++.+..+-..-..+.+. ++++.++..|.+++..|...|+.++
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 233333444431001 1446778888888877632333333 3799999999999999999998765
No 271
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=70.58 E-value=1.1e+02 Score=29.67 Aligned_cols=217 Identities=16% Similarity=0.102 Sum_probs=117.6
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhc----ChHhHHHHh------cC-CcHHHHHHHhcCC--CHHHHHHHHHHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKE----DEKNVLAVM------GR-SNIAALVQLLTAT--SPRIREKTVTVI 220 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~----~~~~~~~i~------~~-g~v~~Lv~lL~~~--~~~v~~~A~~~L 220 (534)
..+|--+++|.+..+..=..|+.-|..++.. ++..+..+. .+ |..+-+..++-.+ .+...+.+...|
T Consensus 7 QlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL 86 (262)
T PF14225_consen 7 QLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLL 86 (262)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHH
Confidence 4567778888888888888888888777643 333333221 12 3344444433222 245667778888
Q ss_pred HHhhcCCc--------hhHHHHhcCCHHHHHHHHccCC----HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHH-H
Q 009471 221 CSLAESGS--------CENWLVSEGVLPPLIRLVESGS----TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI-C 287 (534)
Q Consensus 221 ~~La~~~~--------~~~~l~~~g~i~~Lv~lL~~~~----~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~l-l 287 (534)
..|+..+. .|-.+.-.+.+|.++.-+++++ .......|..|..++.... ...+..++.. .
T Consensus 87 ~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya 159 (262)
T PF14225_consen 87 SRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYA 159 (262)
T ss_pred HHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHH
Confidence 88876542 2333333355677777777766 1334466677777764211 1112222222 2
Q ss_pred ccCC---hHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCCh
Q 009471 288 QTGD---SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI 364 (534)
Q Consensus 288 ~~~~---~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l 364 (534)
+..- .+-...++..|+.-- .|+ .+...+..+++++.++.. .++...+.+|..+-..-+..+. .....+
T Consensus 160 ~~~fr~~~dfl~~v~~~l~~~f-~P~-----~~~~~l~~Ll~lL~n~~~-w~~~~~L~iL~~ll~~~d~~~~--~~~dli 230 (262)
T PF14225_consen 160 KGRFRDKDDFLSQVVSYLREAF-FPD-----HEFQILTFLLGLLENGPP-WLRRKTLQILKVLLPHVDMRSP--HGADLI 230 (262)
T ss_pred hcCCCCHHHHHHHHHHHHHHHh-Cch-----hHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhccccCCCC--cchHHH
Confidence 2211 122233444443211 111 123457778888988876 7899888888888764332222 334456
Q ss_pred HHHHHhhcCCchHHHHHHHHHHh
Q 009471 365 RSLLAYLDGPLPQESAVGALRNL 387 (534)
Q Consensus 365 ~~L~~~L~~~~~~~~a~~aL~~L 387 (534)
.+++++++. +.-..|+.+|.+.
T Consensus 231 spllrlL~t-~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 231 SPLLRLLQT-DLWMEALEVLDEI 252 (262)
T ss_pred HHHHHHhCC-ccHHHHHHHHHHH
Confidence 777777764 2333444444443
No 272
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=70.17 E-value=2.9e+02 Score=34.54 Aligned_cols=141 Identities=9% Similarity=0.055 Sum_probs=85.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH----HHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471 201 LVQLLTATSPRIREKTVTVICSLAESGSCENW----LVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIV 275 (534)
Q Consensus 201 Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~----l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~ 275 (534)
++..-.+++..+...|+..|..++..--.++. -++...+.++..++.. .+.++++....++.+|..... ..+
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI- 1218 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV- 1218 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-
Confidence 33333345678889999999998874322222 2244568888888875 477899999999998855321 122
Q ss_pred hCCChHHHHHHHc----cCChHHHHHHHHHHHHccCCc-h-H----HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHH
Q 009471 276 GHGGVRPLIEICQ----TGDSVSQAAAACTLKNISAVP-E-V----RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ 345 (534)
Q Consensus 276 ~~g~i~~Lv~ll~----~~~~~~~~~a~~aL~nLa~~~-~-~----~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~ 345 (534)
..|-+.+..++. +.++.+...|..++..+.... . . ...+ ...|.++.+......+.++-..|+..|+
T Consensus 1219 -kSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1219 -KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLR 1295 (1780)
T ss_pred -hcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHH
Confidence 226666666654 456777778888877665421 0 0 1122 2345666666654433356666777777
Q ss_pred HH
Q 009471 346 NL 347 (534)
Q Consensus 346 ~L 347 (534)
++
T Consensus 1296 ~~ 1297 (1780)
T PLN03076 1296 FC 1297 (1780)
T ss_pred HH
Confidence 65
No 273
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=70.04 E-value=60 Score=29.43 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhc-ChHh----HHHHhcCC------cHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHh--
Q 009471 170 AKHKALDSLVEAMKE-DEKN----VLAVMGRS------NIAALV-QLLTATSPRIREKTVTVICSLAESGSCENWLVS-- 235 (534)
Q Consensus 170 ~~~~A~~~L~~l~~~-~~~~----~~~i~~~g------~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~-- 235 (534)
.|..|+..|..+++. +++. -..++-.+ .-+.|+ -++.++++.+|..|+.++..+-+....--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 356677777777765 3332 22333222 333444 467788899999999999998766431111111
Q ss_pred ---c---------------CCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCCh----HHHHHHHccCCh
Q 009471 236 ---E---------------GVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGV----RPLIEICQTGDS 292 (534)
Q Consensus 236 ---~---------------g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i----~~Lv~ll~~~~~ 292 (534)
. ..-..|+..|..+ +..+......+|..|..+.+..+. ..|.+ ..+..++.+.|+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhcCCC
Confidence 0 1233444445544 666777888888888776544321 12333 444455667899
Q ss_pred HHHHHHHHHHHHccCC
Q 009471 293 VSQAAAACTLKNISAV 308 (534)
Q Consensus 293 ~~~~~a~~aL~nLa~~ 308 (534)
.++..++.++.-+...
T Consensus 160 ~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 160 NVRVAALSCLGALLSV 175 (182)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 9998888888776653
No 274
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.96 E-value=1.2e+02 Score=30.26 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=110.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhh-cChHhHHHHhcC-Cc-HHHHHHHhcCC-----C--------HHHHHHHHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMK-EDEKNVLAVMGR-SN-IAALVQLLTAT-----S--------PRIREKTVT 218 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~-~~~~~~~~i~~~-g~-v~~Lv~lL~~~-----~--------~~v~~~A~~ 218 (534)
.++.+.+.|.+........++.-|.++.. .+....+.+.+. +. .+.+.+++... + +.+|...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 35666667777777777788888888887 555666666543 22 55666666321 1 288999998
Q ss_pred HHHHhhcCCc---hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH-hhcCh----hhHHHHHhCCChHHHHHHHccC
Q 009471 219 VICSLAESGS---CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR-LSMSA----EMARAIVGHGGVRPLIEICQTG 290 (534)
Q Consensus 219 ~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~-Ls~~~----~~~~~l~~~g~i~~Lv~ll~~~ 290 (534)
.+..+....+ .++.+-+.+.+..+.+-|..+++++......+|.. +-.++ ..+..+.....+..|..+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 8888876554 44555566789999999999888888888888875 43332 2345566677788888888777
Q ss_pred Ch----HHHHHHHHHHHHccCCch
Q 009471 291 DS----VSQAAAACTLKNISAVPE 310 (534)
Q Consensus 291 ~~----~~~~~a~~aL~nLa~~~~ 310 (534)
++ .+...+-..|..++.++.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCC
Confidence 77 788888899998887663
No 275
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=69.94 E-value=35 Score=29.16 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC----------c----hHHHHHH
Q 009471 252 VGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV----------P----EVRQMLA 316 (534)
Q Consensus 252 ~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~----------~----~~~~~i~ 316 (534)
.++.+.+.++..++..+ +..| ...++.++.+++. ++......+.+|..+... . +.+..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 35666677777776543 2222 2234667777665 455555555555544320 0 1122222
Q ss_pred h--hCcHHHHHHHhhcCCC---hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHH
Q 009471 317 E--EGIVSVMIKLLDCGIL---LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGAL 384 (534)
Q Consensus 317 e--~g~i~~L~~ll~~~~~---~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL 384 (534)
+ ..++..+.+.+..... .+....++.++......-+ ...+.+...++.+++++.++..++.|+.+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2 3345555555544332 3678888888888776322 235566678888888888888888888765
No 276
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=69.48 E-value=1.4e+02 Score=32.62 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHh----cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhC-CChHH
Q 009471 208 TSPRIREKTVTVICSLAESGSCENWLVS----EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH-GGVRP 282 (534)
Q Consensus 208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~----~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~-g~i~~ 282 (534)
-..+++--|+.+|+.+..+...-..+.. ...+..++..+. .++..+-.++++|.|+..++..+..+... .-+..
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILD 634 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 3467888888899888877653333322 235556666555 56677888999999999887766655432 11111
Q ss_pred HHHHHcc-CChHHHHHHHHHHHHccC--CchHHHHHHhhCcHHHHHHHhh----cCCChhHHHHHHHHHHHHccCChHHH
Q 009471 283 LIEICQT-GDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLD----CGILLGSKEYAAECLQNLTASNENLR 355 (534)
Q Consensus 283 Lv~ll~~-~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~i~~L~~ll~----~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (534)
.+.-+.. ++..++.+......|++. ..++- +.+..+.+...+. .-.+.+.....+.+|++++..++..+
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 1111222 233444433333344432 11111 1344444444432 22222457778889999998655544
Q ss_pred HHHHhcCChHHHHHhhcC
Q 009471 356 RSVVSEGGIRSLLAYLDG 373 (534)
Q Consensus 356 ~~i~~~g~l~~L~~~L~~ 373 (534)
.+.+.-.++.+.+-+++
T Consensus 711 -~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 711 -QLAKNRSVDSIAKKLKE 727 (745)
T ss_pred -HHHHhcCHHHHHHHHHH
Confidence 45555556666666643
No 277
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.33 E-value=89 Score=28.32 Aligned_cols=138 Identities=17% Similarity=0.094 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhcC-Cc-----hhHHHHhcC------C-HHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-C
Q 009471 212 IREKTVTVICSLAES-GS-----CENWLVSEG------V-LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-H 277 (534)
Q Consensus 212 v~~~A~~~L~~La~~-~~-----~~~~l~~~g------~-i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~ 277 (534)
+|..|+.+|..++.. ++ +...++=.+ . .+.+.-++.|+++.+|..|+.+|..|-.....--..++ .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 678888888888876 32 333333222 3 33444466788999999999999998665432212222 1
Q ss_pred C----C---------------hHHHHHHHcc-CChHHHHHHHHHHHHccCCc-hH--HHHHHhhCcHHHHHHHhhcCCCh
Q 009471 278 G----G---------------VRPLIEICQT-GDSVSQAAAACTLKNISAVP-EV--RQMLAEEGIVSVMIKLLDCGILL 334 (534)
Q Consensus 278 g----~---------------i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~-~~--~~~i~e~g~i~~L~~ll~~~~~~ 334 (534)
. . -..|+..++. .++......+.+|..|..+- -. ...+. ...+..+..++.+.+.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~d~- 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHRDP- 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcCCC-
Confidence 1 1 2233444443 36667778888888887743 22 22121 2345555666667676
Q ss_pred hHHHHHHHHHHHHccCC
Q 009471 335 GSKEYAAECLQNLTASN 351 (534)
Q Consensus 335 ~v~~~a~~~L~~La~~~ 351 (534)
.++..++.++..+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 79999999998887643
No 278
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=68.47 E-value=13 Score=32.06 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=57.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCC-ChH---HHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAK-PNS---VREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~-~~~---v~~~A~~aL~~L~ 469 (534)
.+..|.+-|.++++.++..|+..|-.+..+ +.++..+....++..|.+++.+. ... |++.+...+....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 467778888899999999999999999865 78888988888999999988743 333 8999999888876
No 279
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=68.39 E-value=28 Score=29.99 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=59.1
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCCC--HH--HHHHHHHHHHHhhcCC
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATS--PR--IREKTVTVICSLAESG 227 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~--~~--v~~~A~~~L~~La~~~ 227 (534)
...++.+-.+|+++++..+..|+..|-.+.... +.....+.....+..|.+++.... +. |++.++..|...+..-
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 344677888999999999999999888888776 455566667788999999887643 33 8999999998887543
No 280
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=68.12 E-value=1.9e+02 Score=31.60 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHHhhcChHhHHHHh---cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhc--CCHH
Q 009471 166 GHLEAKHKALDSLVEAMKEDEKNVLAVM---GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSE--GVLP 240 (534)
Q Consensus 166 ~~~~~~~~A~~~L~~l~~~~~~~~~~i~---~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~--g~i~ 240 (534)
-..+.+.-|++.|+-+..+..-+-..+- ....+..++..++ .++..+..++++|.|+-.++..+..+... ..+.
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILD 634 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 3455566666666666654433222221 1123445555554 45788999999999998886566655433 1122
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccC-----ChHHHHHHHHHHHHccCCchHHH
Q 009471 241 PLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTG-----DSVSQAAAACTLKNISAVPEVRQ 313 (534)
Q Consensus 241 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~-----~~~~~~~a~~aL~nLa~~~~~~~ 313 (534)
.+...=...+..++...+....|.+.. .++ .+.++.+.+...+... +-+.....+.+|.+|+..+....
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~----~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDN----EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 222211122445554444444443321 111 1145555555554431 23345567788899998887778
Q ss_pred HHHhhCcHHHHHHHhhcC
Q 009471 314 MLAEEGIVSVMIKLLDCG 331 (534)
Q Consensus 314 ~i~e~g~i~~L~~ll~~~ 331 (534)
.+...--+..+++-+++.
T Consensus 711 ~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHhcCHHHHHHHHHHh
Confidence 887766677777777543
No 281
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.69 E-value=54 Score=32.15 Aligned_cols=136 Identities=17% Similarity=0.218 Sum_probs=89.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHH
Q 009471 281 RPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359 (534)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~ 359 (534)
...+..|.+.+|.....++..++.|+..+ +....+. ..++..+++-+++... .+-..|+.++..|...... .+.
T Consensus 91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS-~VsraA~~t~~difs~ln~---~i~ 165 (334)
T KOG2933|consen 91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRS-AVSRAACMTLADIFSSLNN---SID 165 (334)
T ss_pred HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHH---HHH
Confidence 44556677888999999999999888744 3333332 2345666677777666 7888899999998863222 222
Q ss_pred hcCChHHHHHhh-cC-----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471 360 SEGGIRSLLAYL-DG-----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (534)
Q Consensus 360 ~~g~l~~L~~~L-~~-----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la 428 (534)
+ -++.++..| .. .-+++.|-.+|..+..+..+.. .++.|...+++.++.++..++....+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-----~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-----LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-----HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 234444433 21 2368888889888887444433 4677777788888888888876655544
No 282
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=64.74 E-value=56 Score=33.31 Aligned_cols=151 Identities=11% Similarity=0.088 Sum_probs=99.5
Q ss_pred hHHHHHhhcC---CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHh--c--------CCHHHHHHHHHHHHHhcC
Q 009471 364 IRSLLAYLDG---PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLK--A--------GSLGAQQAAASALCRVCT 429 (534)
Q Consensus 364 l~~L~~~L~~---~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~--~--------~~~~v~~~A~~aL~~la~ 429 (534)
-..++.+|++ +..+..++.+++-|++ ..+-+.+.....+..|+.+-+ + .+..|..++.++|+|+..
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 4556777765 3456788888988888 333333333334555555432 1 123788999999999995
Q ss_pred C-hhHHHHHHhcCchHHHHHhhc-----CCChHHHHHHHHHHHHhc-CCCcchHHHHhhCCCHHHHHhhcCCCC------
Q 009471 430 S-AEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSP------ 496 (534)
Q Consensus 430 ~-~~~~~~i~~~g~v~~Lv~ll~-----~~~~~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~------ 496 (534)
+ +..+....+......+.+.+. +...++...=+..|.-+. .....+..++.+.+|++.+-+.|++.-
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 4 778888888777777777763 223445555556666555 345667788888999999999997531
Q ss_pred ---c---h--hHHHHHHHHHHhhchh
Q 009471 497 ---Q---N--TAKKYAVACLASLSPS 514 (534)
Q Consensus 497 ---~---~--~~k~~a~~~L~~L~~~ 514 (534)
+ + ..-..+..++.|++.+
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeec
Confidence 0 1 1345677888888866
No 283
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=64.41 E-value=60 Score=31.70 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=47.2
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH--HHHhCCChHHHHH----HHc--------cCChHHHHHHHHHHH
Q 009471 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR--AIVGHGGVRPLIE----ICQ--------TGDSVSQAAAACTLK 303 (534)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~--~l~~~g~i~~Lv~----ll~--------~~~~~~~~~a~~aL~ 303 (534)
++|+++.++++.++..+..++.+|..+-.+.+... .+...|..+.+-. +|. .++..+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 49999999999999999999999999977533322 2444565444433 333 234455566777777
Q ss_pred Hcc
Q 009471 304 NIS 306 (534)
Q Consensus 304 nLa 306 (534)
.|.
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 663
No 284
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.14 E-value=1.3e+02 Score=33.73 Aligned_cols=204 Identities=20% Similarity=0.173 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCC
Q 009471 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI 332 (534)
Q Consensus 253 ~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~ 332 (534)
+...|...|.+.+..+.....+...+.+..+.+-. ++-|+...+ --..+-|.+.+.-+-.-++..+
T Consensus 309 Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~V-------------vlpN~~lR~-eDeElFED~pleYiRRDlEGsD 374 (960)
T KOG1992|consen 309 LVSKALQFLTSVSRRPHYAELFEGENVLAQICEKV-------------VLPNLILRE-EDEELFEDNPLEYIRRDLEGSD 374 (960)
T ss_pred HHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhh-------------cccccccch-hhHHHhccCHHHHHHHhcccCC
Confidence 44556666666666555555554444444443322 223333322 2234556666777777776555
Q ss_pred ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHH-hhcCCc----hHHHHHHHHHHhhcC--ccHHHHHhc----Cc
Q 009471 333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA-YLDGPL----PQESAVGALRNLVGS--VSQEVLISL----GF 401 (534)
Q Consensus 333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~-~L~~~~----~~~~a~~aL~~La~~--~~~~~l~~~----~~ 401 (534)
...-|..|+..+..|+...+..-..++..- +..+++ +..+|. -.+.++.....++.. .....+... ++
T Consensus 375 vdTRRR~a~dlvrgL~~~fe~~vt~v~~~~-v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv 453 (960)
T KOG1992|consen 375 VDTRRRAAIDLVRGLCKNFEGQVTGVFSSE-VQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDV 453 (960)
T ss_pred cchhHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccH
Confidence 424577889999999986654333333222 233332 444543 356777777777762 111111111 11
Q ss_pred H----HHHHHHHhc----CCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc
Q 009471 402 F----PRLVHVLKA----GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ 473 (534)
Q Consensus 402 i----~~Lv~lL~~----~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~ 473 (534)
+ ..+..-|.+ ..|-++..+.+-+.-+=.. -.+..+ ...+|.+++.+++++.-+..+|+.++-.+....+
T Consensus 454 ~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q-l~~~~l--m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre 530 (960)
T KOG1992|consen 454 VDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ-LGKEHL--MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRE 530 (960)
T ss_pred HHHHHHHhhHHhccCccccccchhhcccceeeeeccc-CChHHH--HHHHHHHHHhccCcchHHHHHHHHHHHhcccccc
Confidence 1 222222333 2244555555444333222 111122 1358999999999999999999999998875544
Q ss_pred c
Q 009471 474 N 474 (534)
Q Consensus 474 ~ 474 (534)
+
T Consensus 531 ~ 531 (960)
T KOG1992|consen 531 N 531 (960)
T ss_pred C
Confidence 4
No 285
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.99 E-value=35 Score=37.12 Aligned_cols=137 Identities=13% Similarity=0.093 Sum_probs=96.2
Q ss_pred HHHHHHHcc----CChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH
Q 009471 281 RPLIEICQT----GDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355 (534)
Q Consensus 281 ~~Lv~ll~~----~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (534)
|...+.|.+ .|+..+..|.-+|..+.. ..+.+. .-+|.++..++..+.+.+|.+++-.|+.++-+.....
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~ 969 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA 969 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence 344455654 688999999988887654 223333 3488899998744434889999999998887544332
Q ss_pred HHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 356 RSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 356 ~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
+.. -..|.+-|.+ ..++..|+.++.+|... -++--.|-++.+..+|.+++.++...|-..+..++..
T Consensus 970 de~-----t~yLyrrL~De~~~V~rtclmti~fLila---gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 970 DEH-----THYLYRRLGDEDADVRRTCLMTIHFLILA---GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred HHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHc---cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 222 3455565554 67899999999998762 1222356788899999999999999998888888853
No 286
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=62.42 E-value=81 Score=30.81 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=49.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh--HHHHhcCCHHHHHHHHc------------cCCHHHHHHHHHHHH
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCE--NWLVSEGVLPPLIRLVE------------SGSTVGKEKATISLQ 262 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~--~~l~~~g~i~~Lv~lL~------------~~~~~~~~~A~~~L~ 262 (534)
.+|+++.++++.++.++..++.+|..+...-+.. ..+.+.|..+.+-..+. +.+..+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 4899999999999999999999999998765422 24666776655544432 234456666777777
Q ss_pred Hhh
Q 009471 263 RLS 265 (534)
Q Consensus 263 ~Ls 265 (534)
.|.
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 763
No 287
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=61.10 E-value=1.3e+02 Score=27.29 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=76.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~ 275 (534)
.++.++++.-+++..++..|+.++..+....= +-. ..+|.++.+..++++.++..|...+..+....+.--.-.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 46677778888999999999999988765431 111 258999999999999999999999999976544321111
Q ss_pred hCCChHHHHHHHcc--CChH--H---HHHHHHHHHHccCC-chHHHHHHhhCcHHHHHHHhhc
Q 009471 276 GHGGVRPLIEICQT--GDSV--S---QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDC 330 (534)
Q Consensus 276 ~~g~i~~Lv~ll~~--~~~~--~---~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~~ll~~ 330 (534)
-..|+..-..+.+. ++.. . ......-|..+... ...|..+ +..+++.+..
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 12234444433321 1111 1 34445555555552 2555555 4555555543
No 288
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=60.41 E-value=1.3e+02 Score=27.19 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=57.0
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (534)
...+++-++.-|+..+...+.-|...+.+++.. ..+....++ ...|.++-..|.+.++++...++.+|..|....+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 455677777878877777788888888888766 333322333 3678888888999999999999999999965543
No 289
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=59.89 E-value=1.6e+02 Score=35.83 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=55.7
Q ss_pred cCChHHHHHhhc----CC--chHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHH
Q 009471 361 EGGIRSLLAYLD----GP--LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMK 434 (534)
Q Consensus 361 ~g~l~~L~~~L~----~~--~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~ 434 (534)
....+.++.+.+ ++ .++.-+......+-..- +......++..|+..+-+++..-...|+.+|..|+.. +.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f--ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~--~~ 505 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF--DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK--NP 505 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--cH
Confidence 355666666543 32 23333333333332221 1233445788999988888765667899999999942 23
Q ss_pred HHHHh-cCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 435 KLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 435 ~~i~~-~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
..+.. +..+..+++.+..-+..=-.....+|+.++
T Consensus 506 ~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 506 SELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 33322 234555555555444443455677777777
No 290
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=58.07 E-value=1e+02 Score=31.95 Aligned_cols=233 Identities=12% Similarity=0.057 Sum_probs=115.1
Q ss_pred CCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh-HHH
Q 009471 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE-NLR 355 (534)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~-~~~ 355 (534)
...+..|+.++.++|+.-|.....+|.++-..--..+.++...+...+.+.+............++.++.+-.+.. ..+
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 3446889999999999999999888888665222233333444566677777654443557778888888887532 222
Q ss_pred HHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-
Q 009471 356 RSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS- 430 (534)
Q Consensus 356 ~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~- 430 (534)
+.... =....++.+... ......-..++..+.. ...- ...++..+++.=-..++.=+..-+.-+..+...
T Consensus 212 ~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~ 286 (409)
T PF01603_consen 212 EEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL 286 (409)
T ss_dssp HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc
Confidence 11110 001122223232 2223344444444443 1100 001122222222233333333344444444432
Q ss_pred --hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhC--CCHHHHHhhcCC----CCchhHHH
Q 009471 431 --AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDD--KSVPNLVQLLDP----SPQNTAKK 502 (534)
Q Consensus 431 --~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~--~~v~~Lv~lL~~----~~~~~~k~ 502 (534)
.+..+.+ ......+.+.+.+.+..|.+.|+....+ +....++.+. ..++.+..-|.. .=+..++.
T Consensus 287 ~~~~f~~i~--~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 287 PPEEFQKIM--VPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp -HHHHHHHH--HHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred CHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 2233222 2346667777788888888877654321 1111122111 133444444433 21456888
Q ss_pred HHHHHHHhhchhHHHHHHH
Q 009471 503 YAVACLASLSPSARKLLER 521 (534)
Q Consensus 503 ~a~~~L~~L~~~~k~~~~~ 521 (534)
.+..++..+.....++.++
T Consensus 360 ~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 360 LAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHH
Confidence 8888888887775554443
No 291
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=57.69 E-value=31 Score=29.80 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=56.1
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHH-HHHhhcC---CChHHHHHHHHHHHHhcC
Q 009471 401 FFPRLVHVLK-AGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPL-LIKLLEA---KPNSVREVAAQAISSLVT 470 (534)
Q Consensus 401 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~-Lv~ll~~---~~~~v~~~A~~aL~~L~~ 470 (534)
.+..|.+-|. +.++.++..|+..|-.+..+ ..+...+...+++.. |++++.. .+..|+...+..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3556666565 45889999999999998865 788899999999997 9999973 346899999999988863
No 292
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=51.46 E-value=75 Score=26.08 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=52.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc------CCChHHHHHHHHHHHHh
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE------AKPNSVREVAAQAISSL 468 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~------~~~~~v~~~A~~aL~~L 468 (534)
++..|..-|.+.++.++..|+..|-.+..+ +.+...+....++..++++.. ..+..+|..+.+.+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 466777777888999999999999999965 788888888777777766421 33678899998877654
No 293
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=50.97 E-value=3.2e+02 Score=28.81 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=54.9
Q ss_pred CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhc------CCHHHHHHHHHHHHHhcCCh--hHHHHHHhcC--ch
Q 009471 374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA------GSLGAQQAAASALCRVCTSA--EMKKLVGEAG--CT 443 (534)
Q Consensus 374 ~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~A~~aL~~la~~~--~~~~~i~~~g--~v 443 (534)
.+....+-.++.||+..... ...+..|..+|.+ .+..+.+-|...+..+.-.. +....+--.- .+
T Consensus 229 ~~l~~~~w~~m~nL~~S~~g-----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 229 VSLCKPSWRTMRNLLKSHLG-----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred cccchhHHHHHHHHHcCccH-----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 45667788888888873222 2246778888832 23456677887777766332 2222221122 57
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 444 PLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 444 ~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
+.|...++.+++.+-......+..+.
T Consensus 304 ~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 77777777777666666666666665
No 294
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=50.57 E-value=2e+02 Score=29.90 Aligned_cols=246 Identities=13% Similarity=0.143 Sum_probs=118.5
Q ss_pred HHHHHHHHhhcCCch--hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHcc-C
Q 009471 215 KTVTVICSLAESGSC--ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT-G 290 (534)
Q Consensus 215 ~A~~~L~~La~~~~~--~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~-~ 290 (534)
.+-..|..+..+.+. ....+....+..|+.+++++++.-|.....+|.++-.. ...+..+ .......+.+.+.. .
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I-r~~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI-RKSINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH-HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCcc
Confidence 333455555444331 22234445688899999999999999998888887432 2222222 11122333333332 2
Q ss_pred ChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471 291 DSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL 368 (534)
Q Consensus 291 ~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~ 368 (534)
.+......+..+..+-.+- ..+.... .=....++.|.....-..-...-..|+..+...++.....+ +..++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~ll 261 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLL 261 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHH
Confidence 2233344444444444321 1111110 00123344444444432224444555555555455443222 23334
Q ss_pred HhhcC--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhc--Cc
Q 009471 369 AYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEA--GC 442 (534)
Q Consensus 369 ~~L~~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~--g~ 442 (534)
+..-. +.-+..-+.-+..+.. +.....-+...+...+...+.+.+..|.+.|+..+.| +.....+.+. ..
T Consensus 262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n----~~~~~li~~~~~~i 337 (409)
T PF01603_consen 262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN----EYFLSLISQNSRVI 337 (409)
T ss_dssp HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS----HHHHHHHHCTHHHH
T ss_pred HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC----HHHHHHHHhChHHH
Confidence 43321 1122333444455544 2111122233456777777889999998888764432 3222222111 13
Q ss_pred hHHHHHhhc-----CCChHHHHHHHHHHHHhcCC
Q 009471 443 TPLLIKLLE-----AKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 443 v~~Lv~ll~-----~~~~~v~~~A~~aL~~L~~~ 471 (534)
+|.+..-+. +-+..++..|..++..|...
T Consensus 338 ~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 338 LPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 555555543 44688999999999888644
No 295
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=48.90 E-value=74 Score=28.19 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=60.2
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHH-hhcCCC--hHHHHHHHHHHHHhcC
Q 009471 396 LISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIK-LLEAKP--NSVREVAAQAISSLVT 470 (534)
Q Consensus 396 l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~-ll~~~~--~~v~~~A~~aL~~L~~ 470 (534)
++...+.+.+.+.+.+.++.+-..++.++..+... ...+..+ +-+++.++. ++.++. ..-|..+++++..++.
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~el--e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLEL--EVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 34456778888888777788989999999998843 2333333 224555555 566443 4678889999999998
Q ss_pred CCcchHHHHhhCCC
Q 009471 471 LPQNCREVKRDDKS 484 (534)
Q Consensus 471 ~~~~~~~~~~~~~~ 484 (534)
.+....++....++
T Consensus 147 ~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 147 DPQFLVDLFVNYDC 160 (168)
T ss_pred ChhHHHHHHHHcCC
Confidence 88877776665443
No 296
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=48.61 E-value=92 Score=31.43 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=60.6
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-------CHHHHHHHHHHHHHhhcC
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-------SPRIREKTVTVICSLAES 226 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-------~~~v~~~A~~~L~~La~~ 226 (534)
.+...+...+...+...+..|+..|.. |+.- ...+|.++.++... +.......++.+..|..+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~t----D~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRT----DPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcc----CCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 344455555555555556555555433 2211 13477777776543 456667777888888888
Q ss_pred CchhHHHHhcCCHHHHHHHHcc----------CCHHHHHHHHHHHHHhhcC
Q 009471 227 GSCENWLVSEGVLPPLIRLVES----------GSTVGKEKATISLQRLSMS 267 (534)
Q Consensus 227 ~~~~~~l~~~g~i~~Lv~lL~~----------~~~~~~~~A~~~L~~Ls~~ 267 (534)
+...-...-...+++++.++-. ....+|+.|+..|..++..
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 7522222222257777776622 2346888898888888743
No 297
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=48.19 E-value=3.7e+02 Score=28.72 Aligned_cols=142 Identities=13% Similarity=0.039 Sum_probs=85.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC--------CHHHHHHHHHHHHHhhcChhh
Q 009471 199 AALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--------STVGKEKATISLQRLSMSAEM 270 (534)
Q Consensus 199 ~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--------~~~~~~~A~~~L~~Ls~~~~~ 270 (534)
..+.+.+.++++..+..|+..|. .+.. -.. .+|.++.++.++ +-.........++.|..|+..
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~---TDsG-L~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLE---TDSG-LQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhc---cCcc-HHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34445555566777777666553 2221 122 266667666543 344555677777888777654
Q ss_pred HHHHHhCCChHHHHHHHcc----------CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcC-CChhHHHH
Q 009471 271 ARAIVGHGGVRPLIEICQT----------GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG-ILLGSKEY 339 (534)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~----------~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~-~~~~v~~~ 339 (534)
.-.-.-+..+|.++.++-+ ..+.+|.-|+..+..++..-.....-....++..+.+.+.+. .+....+-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 3322224456777766532 457788888888888876432222224566777888887654 34466777
Q ss_pred HHHHHHHHcc
Q 009471 340 AAECLQNLTA 349 (534)
Q Consensus 340 a~~~L~~La~ 349 (534)
++..|..+..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 7777777764
No 298
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=47.93 E-value=3.2e+02 Score=27.87 Aligned_cols=192 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred HccCChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhh----------cCCChhHHHHHHHHHHHHccCChHHH
Q 009471 287 CQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLD----------CGILLGSKEYAAECLQNLTASNENLR 355 (534)
Q Consensus 287 l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~----------~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (534)
|...+...|..|+..|.+.-...++...... ..-++.+++.++ ++.+..+..+|+.+|+.+-.+..-..
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Q ss_pred HHHHhcCC--hHHHHHhhcC-CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHH-----hcCCHHHHHHHHHHHHHh
Q 009471 356 RSVVSEGG--IRSLLAYLDG-PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVL-----KAGSLGAQQAAASALCRV 427 (534)
Q Consensus 356 ~~i~~~g~--l~~L~~~L~~-~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL-----~~~~~~v~~~A~~aL~~l 427 (534)
..-.+... +...+..+.+ ...+..+...++.|+.......++....+..++..+ .-++..+..+...++.+|
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q ss_pred cCChhHHHHHHhcC--chHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471 428 CTSAEMKKLVGEAG--CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480 (534)
Q Consensus 428 a~~~~~~~~i~~~g--~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (534)
. ..+...|.+.- .+|.++..+-+....+|..|...+..+...-+..+.+.+
T Consensus 162 l--~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~ 214 (372)
T PF12231_consen 162 L--SQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSK 214 (372)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHH
No 299
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.11 E-value=45 Score=28.96 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=16.3
Q ss_pred hHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 280 VRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
|.+|+.++.+.++.+...|+.+|.+-.-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 6777777776677777777777766443
No 300
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.42 E-value=4.3e+02 Score=28.31 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=75.9
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--------CCHHHHHHHHHHHHHhh
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--------TSPRIREKTVTVICSLA 224 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--------~~~~v~~~A~~~L~~La 224 (534)
+.+..++...+-.+++..+.+|+..|.. |+.- . -.+|.++.++.. .|-......++.++.|.
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T----DsGL-~-----~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET----DSGL-Q-----QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc----CccH-H-----HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 4456666666677788888888877654 2211 0 125666666543 24566777888888888
Q ss_pred cCCchhHHHHhcCCHHHHHHHHcc----------CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC
Q 009471 225 ESGSCENWLVSEGVLPPLIRLVES----------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG 290 (534)
Q Consensus 225 ~~~~~~~~l~~~g~i~~Lv~lL~~----------~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~ 290 (534)
.++...-.-.-...+|.++.++-+ ....+|..|+..+..++.+......-.+...+..|.+.+.+.
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 887522211122346776665532 244588899998888876643332223334456666666553
No 301
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=44.12 E-value=1.3e+02 Score=30.42 Aligned_cols=111 Identities=15% Similarity=0.035 Sum_probs=64.7
Q ss_pred CHHHHHHHHccC-------CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc----------cCChHHHHHHHH
Q 009471 238 VLPPLIRLVESG-------STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ----------TGDSVSQAAAAC 300 (534)
Q Consensus 238 ~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~----------~~~~~~~~~a~~ 300 (534)
.+|.+++++.++ +..........+..|..|+...-...-|..++.++.++- ...+.+|..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 467777777653 455566677777777777654333222445677776652 235688999999
Q ss_pred HHHHccCCchHHHHHHhhCcHHHHHHHhhcCC-ChhHHHHHHHHHHHHc
Q 009471 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI-LLGSKEYAAECLQNLT 348 (534)
Q Consensus 301 aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~-~~~v~~~a~~~L~~La 348 (534)
.|..++..-.....-....++..+.+.+.+.. +....+-|+..|..+.
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 99888752111111122334446666665443 2234677777776664
No 302
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=42.65 E-value=1.1e+02 Score=25.64 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=51.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhc-CchHHHHHhhcCC--------ChHHHHHHHHHHHHh
Q 009471 400 GFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEA-GCTPLLIKLLEAK--------PNSVREVAAQAISSL 468 (534)
Q Consensus 400 ~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~-g~v~~Lv~ll~~~--------~~~v~~~A~~aL~~L 468 (534)
.+++.|.+-|+..++.|+..++.+|..++.. ++++..+... ..|..+.++-... ...||..|-+++..|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 3567788888888899999999999999854 6777777553 3555555554322 256899999988877
Q ss_pred cC
Q 009471 469 VT 470 (534)
Q Consensus 469 ~~ 470 (534)
..
T Consensus 118 f~ 119 (122)
T cd03572 118 FS 119 (122)
T ss_pred hc
Confidence 54
No 303
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=42.11 E-value=89 Score=25.86 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=33.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhc
Q 009471 197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSE 236 (534)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~ 236 (534)
+++.|+.-|.+++++|...|+.+|...+.++.+-+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5888999999999999999999999999888655555543
No 304
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.93 E-value=44 Score=27.33 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHH
Q 009471 418 QAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVR 458 (534)
Q Consensus 418 ~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~ 458 (534)
...+..+..++..|+.=..+++.|+++.|+.++.+.+.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 45667778888889988889999999999999998877664
No 305
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.82 E-value=1.7e+02 Score=29.27 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhcC--chHHHHHhhcCC---ChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471 415 GAQQAAASALCRVCTSAEMKKLVGEAG--CTPLLIKLLEAK---PNSVREVAAQAISSLVTLPQNCREVKR 480 (534)
Q Consensus 415 ~v~~~A~~aL~~la~~~~~~~~i~~~g--~v~~Lv~ll~~~---~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (534)
.++-.|...+..+...+.....+...+ ++..|+++++.. +..+|..|..+|..|+........+..
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 345555555555555567777776666 999999999743 477899999999999876655555544
No 306
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.51 E-value=1.9e+02 Score=24.33 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=48.4
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcC-CcHHHHHHHhcCC--------CHHHHHHHHHHHH
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGR-SNIAALVQLLTAT--------SPRIREKTVTVIC 221 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~-g~v~~Lv~lL~~~--------~~~v~~~A~~~L~ 221 (534)
....+.-|..+|+..++.+|.+++..|..++...+ ..+..+... ..|..+.++=..+ ...||..|-.++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 34456778889999999999999999999986544 444444332 2344444433211 2568888877776
Q ss_pred Hhhc
Q 009471 222 SLAE 225 (534)
Q Consensus 222 ~La~ 225 (534)
.|-.
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 6644
No 307
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.27 E-value=5.8e+02 Score=28.37 Aligned_cols=180 Identities=14% Similarity=0.059 Sum_probs=107.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHccC--Cch----HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471 281 RPLIEICQTGDSVSQAAAACTLKNISA--VPE----VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (534)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~----~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (534)
|.|.+-|+-.+..+|..|+..+.++-- +|+ ....+.+ +-...+.++|+++-+ .+|..|..-+..+.+ ..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p-~VRS~a~~gv~k~~s---~f 251 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYP-MVRSTAILGVCKITS---KF 251 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCc-hHHHHHHHHHHHHHH---HH
Confidence 445566677889999999999988753 343 2333333 336778899998887 788888776666654 11
Q ss_pred HHHHHhcCChHHHHHh-hcC------CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009471 355 RRSVVSEGGIRSLLAY-LDG------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV 427 (534)
Q Consensus 355 ~~~i~~~g~l~~L~~~-L~~------~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~l 427 (534)
..++-...+..++.. .++ .++|......|-.+..++....+.+. ++|.+-..|.+.+..|+..+...|..+
T Consensus 252 -We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 252 -WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred -HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH-HHHhcchhhhccchhHHHHHHHHHHHH
Confidence 223333333333333 332 45677777777777764333344443 356777778888899999999988887
Q ss_pred cCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471 428 CTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (534)
Q Consensus 428 a~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~ 469 (534)
-.... . .+..---+..++.-+...+..+...-+..+.+..
T Consensus 330 k~vra-~-~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 330 KAVRA-A-KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred Hhhhh-h-hhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 42211 1 1111122445555555555555555444555543
No 308
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.02 E-value=49 Score=27.06 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHH
Q 009471 213 REKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGK 254 (534)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 254 (534)
....+..+..|+..++.-..+++.|+++.|+.+|...+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345677888999999877889999999999999998877653
No 309
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=39.02 E-value=8.2e+02 Score=30.07 Aligned_cols=258 Identities=17% Similarity=0.157 Sum_probs=123.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch----HHHH
Q 009471 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE----VRQM 314 (534)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~----~~~~ 314 (534)
...+.+++.-.+..++......|-.+..++..... +..|..++.. ++......+.+|.||.-.++ .|..
T Consensus 194 ~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~h~~v------~~~L~~ll~~-~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~ 266 (1426)
T PF14631_consen 194 TDKLFEVLSIAPVELQKEIISSLPEILDDSQHDEV------VEELLELLQE-NPELTVPILDALSNLNLSPELLEEVREK 266 (1426)
T ss_dssp HHHHHHHHHHS-TTTHHHHHHTHHHHS-GGGHHHH------HHHHHHHHHH--STTHHHHHHHHHHS---HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcchhHHHH------HHHHHHHHhc-CCchhhhHHHHHhcCCCCHHHHHHHHHH
Confidence 34444444444444555555555555443322222 2566666654 45556777888988888764 3444
Q ss_pred HHh------hCcHHHHHHHhhc-CCChhHHHHHHHHHHHHccC-----------ChHHHHHHH----------hcCChHH
Q 009471 315 LAE------EGIVSVMIKLLDC-GILLGSKEYAAECLQNLTAS-----------NENLRRSVV----------SEGGIRS 366 (534)
Q Consensus 315 i~e------~g~i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~-----------~~~~~~~i~----------~~g~l~~ 366 (534)
+.+ ...+|.++.++-. -+..+..+-....-.+|=.. ....+.... ..+....
T Consensus 267 vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~l 346 (1426)
T PF14631_consen 267 VLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCEKL 346 (1426)
T ss_dssp HHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH-------------------------------HHHHHHHH
T ss_pred HHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHccccccccchhhcccccccccCcccccccccccccccHHHH
Confidence 443 2347888888743 22212222221111112100 000000000 0001123
Q ss_pred HHHhhcC-----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCh----hH-HH
Q 009471 367 LLAYLDG-----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSA----EM-KK 435 (534)
Q Consensus 367 L~~~L~~-----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~----~~-~~ 435 (534)
++..+.. ..+.+.=+.++.++... .+...++.++-++ .+.+..-+..+-.++.+-.... .. ..
T Consensus 347 il~~lks~lr~~k~l~eawiK~I~~~~~~------~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~ 420 (1426)
T PF14631_consen 347 ILDVLKSGLRFSKDLSEAWIKAIESLEDA------SDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQ 420 (1426)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHGGGS------TT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCc------cccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHH
Confidence 3333332 22334445555555431 1234566666554 3334444566666666655431 11 11
Q ss_pred HH-----HhcCchHHHHHhh----cCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHH
Q 009471 436 LV-----GEAGCTPLLIKLL----EAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA 506 (534)
Q Consensus 436 ~i-----~~~g~v~~Lv~ll----~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~ 506 (534)
.+ +-.+..+.++.+. .+.++.++..+...-..+...... +.+. ..+..|+..+-++.+ .....|..
T Consensus 421 ~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qq-eVv~~Lvthi~sg~~-~ev~~aL~ 495 (1426)
T PF14631_consen 421 TFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQ-EVVGALVTHIGSGNS-QEVDAALD 495 (1426)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHH-HHHHHHHHHHHH--H-HHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHH-HHHHHHHHHHcCCcH-HHHHHHHH
Confidence 11 1245677777665 588899999998888888755532 2222 356778777755533 34578899
Q ss_pred HHHhhchh
Q 009471 507 CLASLSPS 514 (534)
Q Consensus 507 ~L~~L~~~ 514 (534)
+|..|+..
T Consensus 496 vL~~L~~~ 503 (1426)
T PF14631_consen 496 VLCELAEK 503 (1426)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999876
No 310
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=38.64 E-value=2.2e+02 Score=23.25 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=50.1
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHh------cCCCHHHHHHHHHHHHHhh
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLL------TATSPRIREKTVTVICSLA 224 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL------~~~~~~v~~~A~~~L~~La 224 (534)
..+..+..+|.+.++..+..|+..|-.+++.. ++....+........++++. ...+..+|+.+...+...+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45677788899999999999999999998754 45555565555555554431 1125789999888776553
No 311
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=38.41 E-value=1.3e+02 Score=34.31 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcC
Q 009471 336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAG 412 (534)
Q Consensus 336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~ 412 (534)
++..+.-+|+++|..++.... ..+|.|++-|+. ..+|-+.+-+++.+|.. -.++-...+|.+-.-|.++
T Consensus 947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~---YTam~d~YiP~I~~~L~Dp 1018 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS---YTAMTDRYIPMIAASLCDP 1018 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH---HHHHHHHhhHHHHHHhcCc
Confidence 566777888888876655432 236777776653 33555666666666652 2233456799999999999
Q ss_pred CHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471 413 SLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (534)
Q Consensus 413 ~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 470 (534)
++-|++++...|.+|-.. .+.+-.+ ++..+..++ +.+++++.-|-..+..+..
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~vKw~G~L----f~Rf~l~l~-D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIVKWNGEL----FIRFMLALL-DANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcchhh----HHHHHHHHc-ccCHHHHHHHHHHHHHHHh
Confidence 999999999999998743 1221111 334444444 4678898888888888763
No 312
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=38.32 E-value=4.1e+02 Score=26.38 Aligned_cols=168 Identities=12% Similarity=0.093 Sum_probs=84.5
Q ss_pred cHHHHHHHhhcCC---ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHH
Q 009471 320 IVSVMIKLLDCGI---LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVL 396 (534)
Q Consensus 320 ~i~~L~~ll~~~~---~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l 396 (534)
++..|+.++-... ..++|..|+.|+.....+|++.|..+++. .+..+..... ..
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~--------~i~~~~~~~~--------~~------- 91 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLST--------LIPSYASGNS--------DD------- 91 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHT--------TSSTT--SS----------S-------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHH--------HhccCCCCcc--------cc-------
Confidence 4555666553332 34789999999999999999988766542 1211000000 00
Q ss_pred HhcCcHHHHHHHHh---cCCHHHHHHHHHHHHHhcCC-hhHHHHHHhc-------C-----chHHHHHhhc-----CCCh
Q 009471 397 ISLGFFPRLVHVLK---AGSLGAQQAAASALCRVCTS-AEMKKLVGEA-------G-----CTPLLIKLLE-----AKPN 455 (534)
Q Consensus 397 ~~~~~i~~Lv~lL~---~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~-------g-----~v~~Lv~ll~-----~~~~ 455 (534)
...+++..|+. .. +.++.-.-.|+.++.++-.+ ++.|.....- | .++.+..++. ..++
T Consensus 92 ~~~nl~~~Ll~-~~~~~~~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ 170 (312)
T PF04869_consen 92 PIANLLTALLD-YDSDLSLDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDP 170 (312)
T ss_dssp SSS-HHHHHT-------SS-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--H
T ss_pred hhhHHHHHHHH-hhccccCCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCch
Confidence 00011122221 10 23444444566666666554 3333332111 1 4455555553 3355
Q ss_pred HHHHHHHHHHHHhc-CCCcchHHHHhhCCCHHHHHhhcCCCC--chhHHHHHHHHHHhh
Q 009471 456 SVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSP--QNTAKKYAVACLASL 511 (534)
Q Consensus 456 ~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~--~~~~k~~a~~~L~~L 511 (534)
.++..-+..|+... .++.....|..+...++.|++.....+ +..++..++..|.-.
T Consensus 171 ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 171 RIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHH
Confidence 56655556666555 556777889988889999999765442 233655555555433
No 313
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.14 E-value=6e+02 Score=28.25 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=91.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhc--CCc----hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH
Q 009471 199 AALVQLLTATSPRIREKTVTVICSLAE--SGS----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR 272 (534)
Q Consensus 199 ~~Lv~lL~~~~~~v~~~A~~~L~~La~--~~~----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 272 (534)
|.|-+-|+..+..+|-.|+..+.++-- +++ ..+.+.+ +-...+..+|+++-+.++..|..-++.... .-|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 445566778899999999999988843 332 2333332 235678889999999999888877666543 122
Q ss_pred HHHhCCChHHHHHHH-----ccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009471 273 AIVGHGGVRPLIEIC-----QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll-----~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~L 347 (534)
.+.-...+..|+.-+ .+...++|......|-.+..+|.....+ +-++|.+=..+.+... .+|..+...|..|
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D~se-~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHDNSE-KVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhccch-hHHHHHHHHHHHH
Confidence 222222223333222 2345578888888888888877544333 2345656566666665 7888888888777
Q ss_pred cc
Q 009471 348 TA 349 (534)
Q Consensus 348 a~ 349 (534)
-.
T Consensus 330 k~ 331 (1005)
T KOG1949|consen 330 KA 331 (1005)
T ss_pred Hh
Confidence 54
No 314
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.96 E-value=6e+02 Score=28.13 Aligned_cols=141 Identities=14% Similarity=0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhHHH
Q 009471 156 TRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 156 i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
+..+...|- +.|+..|..|-.+|.++.. +|++ +....-++..++ +--+..|..+|..+......-...
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~-spec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSE-SPEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 455666664 5688889999999999875 4443 222223444444 777888888888887654311111
Q ss_pred HhcCCHHHHHHHHccCCHH----HHHHHHHHHHHhhcC---hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471 234 VSEGVLPPLIRLVESGSTV----GKEKATISLQRLSMS---AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~----~~~~A~~~L~~Ls~~---~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (534)
....+-..+++.|..+.|. +...-+..+..++.- +.++....=.+.|..+.+.++.++.+--..+...|..|.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 1224456677888775444 333444455555432 333433344556677788887766555555555665554
No 315
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.64 E-value=1.6e+02 Score=29.57 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHhcC--CHHHHHHHHccC---CHHHHHHHHHHHHHhhcChhhHHHHH-------hCC
Q 009471 211 RIREKTVTVICSLAESGSCENWLVSEG--VLPPLIRLVESG---STVGKEKATISLQRLSMSAEMARAIV-------GHG 278 (534)
Q Consensus 211 ~v~~~A~~~L~~La~~~~~~~~l~~~g--~i~~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~~~~~~l~-------~~g 278 (534)
.+|-.|+.++..+..+...-..++..+ .+..|+.++..+ +..++..|..+|..++........++ .||
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 456667777766665666667777776 999999999875 66789999999999987644333222 256
Q ss_pred ChHHHHHH
Q 009471 279 GVRPLIEI 286 (534)
Q Consensus 279 ~i~~Lv~l 286 (534)
.+..+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66666544
No 316
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=37.29 E-value=3.7e+02 Score=29.98 Aligned_cols=61 Identities=18% Similarity=0.055 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 454 PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 454 ~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+..|..++..|+.++...+..-..+.+...+..|+.+|..+.+..+...|+.+|..|--.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 4567889999999999665544454555789999999999886666778888888877655
No 317
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=36.89 E-value=9.6e+02 Score=30.24 Aligned_cols=256 Identities=13% Similarity=0.018 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHHHhhcChHhHH---HHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHH
Q 009471 166 GHLEAKHKALDSLVEAMKEDEKNVL---AVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPP 241 (534)
Q Consensus 166 ~~~~~~~~A~~~L~~l~~~~~~~~~---~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~ 241 (534)
.+.+....|+..|.+++..--+... .-.....+.++..++++. +.++++..++++.++..... ..+ +. |-+.
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWkt 1224 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWKS 1224 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcHH
Confidence 3567788888888888642211100 112335678888877654 58999999999998865432 122 22 4555
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHhhcChhh------HHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHccC---
Q 009471 242 LIRLVE----SGSTVGKEKATISLQRLSMSAEM------ARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISA--- 307 (534)
Q Consensus 242 Lv~lL~----~~~~~~~~~A~~~L~~Ls~~~~~------~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~--- 307 (534)
++.++. +.++.+...|..++..+..+.-. ...+ ...|..|.++.... +..+-..|...||+++.
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 555554 44667777788777766432100 0111 12334455554433 34555566666775521
Q ss_pred -Cc------------------------hHHHH-----HHhhCcHHHHHHH---hhcCCChhHHHHHHHHHHHHccC----
Q 009471 308 -VP------------------------EVRQM-----LAEEGIVSVMIKL---LDCGILLGSKEYAAECLQNLTAS---- 350 (534)
Q Consensus 308 -~~------------------------~~~~~-----i~e~g~i~~L~~l---l~~~~~~~v~~~a~~~L~~La~~---- 350 (534)
.+ +.-.. .....-++.|..+ ..+.. .+||..|+..|..+-..
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R-lEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPR-PEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhhcc
Confidence 00 00000 0011233444433 34444 48999999988777652
Q ss_pred -ChHHHHHHHhcCChHHHHHhhcC-------C------------------chHHHHHHHHHHhhc--CccHHHH--HhcC
Q 009471 351 -NENLRRSVVSEGGIRSLLAYLDG-------P------------------LPQESAVGALRNLVG--SVSQEVL--ISLG 400 (534)
Q Consensus 351 -~~~~~~~i~~~g~l~~L~~~L~~-------~------------------~~~~~a~~aL~~La~--~~~~~~l--~~~~ 400 (534)
++.....+++ +++-+++..++. + ...+.+..+|.+++. ...-+.+ .=.+
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~ 1460 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKK 1460 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333 344444444321 0 124555666666664 1111111 1134
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
++..|..++...+..+.+.+..+|.+|..
T Consensus 1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 45555555566778888888888888874
No 318
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=36.43 E-value=3.3e+02 Score=24.70 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHhhcCccHHHHH--hcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471 375 LPQESAVGALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (534)
Q Consensus 375 ~~~~~a~~aL~~La~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~ 430 (534)
..+..|...+..+......+.++ -...+.++...|++.++++...++.+|..|+.+
T Consensus 53 Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 53 PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 34555555555555432233333 256788888899999999999999999999643
No 319
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.31 E-value=1.4e+02 Score=33.22 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=73.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHH
Q 009471 400 GFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV 478 (534)
Q Consensus 400 ~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 478 (534)
.+|..|..+....=+.|+..++..+..|-.+ ++.-+.+ +..||+-+-++...+...|...|..|....+|.+.+
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 3556666655555578999999999998766 5544444 666777777777888888999999998888888877
Q ss_pred HhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 479 KRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 479 ~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
+.+ .|..+. +.++-+...+.||+..|-.+..+
T Consensus 379 vi~--EIer~~--FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 379 VID--EIERLA--FRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred hHH--HHHHHH--cccCccccceeehhhhhhhhHhc
Confidence 652 233322 34443445777888877766555
No 320
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=35.61 E-value=27 Score=33.12 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=53.8
Q ss_pred hcccCccchhhHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhhHhhhc
Q 009471 35 RQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSG 114 (534)
Q Consensus 35 ~~~~~f~~~~~~i~~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~c~~~~~~~~l~~~s~~~~~~~ 114 (534)
..++.+.++.+.++.||+++... ..-|.=-.+.+..+++..+..+|=++.+=+.|| +-.||-.|+-|+..+..
T Consensus 92 ~YVd~l~~~~~~f~~rL~~i~~~----~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKC---s~eGRalM~lD~q~~~~ 164 (234)
T PF10474_consen 92 SYVDQLVQEFQQFSERLDEISKQ----GPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKC---SNEGRALMQLDFQQLQN 164 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC---ChhhHHHHHHHHHHHHH
Confidence 34555777777788888776532 111111234555688888888888888878899 55689999999999888
Q ss_pred hhhh
Q 009471 115 KLDL 118 (534)
Q Consensus 115 ~l~~ 118 (534)
.++.
T Consensus 165 ~le~ 168 (234)
T PF10474_consen 165 KLEK 168 (234)
T ss_pred HHHH
Confidence 8853
No 321
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.04 E-value=2.7e+02 Score=23.36 Aligned_cols=124 Identities=23% Similarity=0.230 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhhcCC--chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh---------hhHH-H----H
Q 009471 211 RIREKTVTVICSLAESG--SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA---------EMAR-A----I 274 (534)
Q Consensus 211 ~v~~~A~~~L~~La~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~---------~~~~-~----l 274 (534)
.++.+.+.++..++..+ +... ..++.++..+.+ ++........+|..+...- ..++ . +
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp-----~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWP-----DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTST-----THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCc-----hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Confidence 45666677777776543 2222 346777777776 3555555666665554221 1121 1 2
Q ss_pred Hh--CCChHHHHHHHccCC----hHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHH
Q 009471 275 VG--HGGVRPLIEICQTGD----SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL 344 (534)
Q Consensus 275 ~~--~g~i~~Lv~ll~~~~----~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L 344 (534)
.+ ...+..+.+++.... ..+...+..++......-+ -..+.+.+.++.+++++.++ ..+..|+.||
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 21 122333334443322 7778889999988776432 34455677999999999443 4588888775
No 322
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.76 E-value=4.3e+02 Score=25.52 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=64.3
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (534)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (534)
..+++|.+.|+.+++..+ .....+.. ..+++.+.+|.|+.. .+++.+-..+++.|.+|+.--+.
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~---------~~iv~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~P~~~---- 76 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGE---------WNIVQKDLIPILISY--KDDDKLFLACLRLLVNLTWPIEL---- 76 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHH---------hchhhhhHHHHHHhc--cCchHHHHHHHHHHHHhCCCHHH----
Confidence 346777777776665554 22222222 123444555555443 23588999999999998742211
Q ss_pred HhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc-----------CChHHHHHHHH
Q 009471 234 VSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-----------GDSVSQAAAAC 300 (534)
Q Consensus 234 ~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~ 300 (534)
+ .+.. +...+.........+ ...+.+|...+.+..++.++.. .+..+...++.
T Consensus 77 --------~---~~~~~~~~~~~~~~~~l~~~l---~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~ 142 (266)
T PF04821_consen 77 --------L---VESQPKDKNQRRNIPELLKYL---QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLT 142 (266)
T ss_pred --------h---ccCCCCChHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHH
Confidence 0 1110 111121222222222 2345556555566666655421 13345677888
Q ss_pred HHHHccCCc
Q 009471 301 TLKNISAVP 309 (534)
Q Consensus 301 aL~nLa~~~ 309 (534)
.++|+...|
T Consensus 143 LiRNlL~Ip 151 (266)
T PF04821_consen 143 LIRNLLAIP 151 (266)
T ss_pred HHHHHhcCC
Confidence 888887653
No 323
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=34.54 E-value=1.2e+02 Score=26.49 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=22.6
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHH
Q 009471 443 TPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCRE 477 (534)
Q Consensus 443 v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~ 477 (534)
|++|++++.+.+..+...|+.+|.+-...-.....
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyDaf~d 130 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLVYDAFND 130 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TTCCHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHhhHHH
Confidence 78888999888888888888888877655444333
No 324
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.28 E-value=67 Score=33.75 Aligned_cols=70 Identities=16% Similarity=0.063 Sum_probs=57.4
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC--CChHHHHHHHHHHHHhc
Q 009471 400 GFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQAISSLV 469 (534)
Q Consensus 400 ~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~A~~aL~~L~ 469 (534)
..+..|.+-+.+.++.++..|+..|-.+..+ ..+...+.+.+++..++++.+. .+..+|++++..|-...
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 3467777788888899999999988877755 6777888999999999999974 46889999999887654
No 325
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=33.69 E-value=2.4e+02 Score=29.88 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=66.3
Q ss_pred hcCChHHHHHhhcCCchHHHHHHHHHHhhc-CccHH----HHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC---
Q 009471 360 SEGGIRSLLAYLDGPLPQESAVGALRNLVG-SVSQE----VLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS--- 430 (534)
Q Consensus 360 ~~g~l~~L~~~L~~~~~~~~a~~aL~~La~-~~~~~----~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~--- 430 (534)
+.+.++.+++.++.+.+-+--++.+. +. ++... -+.+.++++.|+.+|. +.++.++.+|+..|..+..-
T Consensus 19 ~~~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 19 QPNFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred CccHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 34566667766666555544444444 22 23333 3346899999999996 44678999999888877531
Q ss_pred -----------hhHHHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHhc
Q 009471 431 -----------AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLV 469 (534)
Q Consensus 431 -----------~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~ 469 (534)
....+.+.....+..|++.+-. ........+..++..|.
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 2344556666677777777652 33444455555555554
No 326
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.65 E-value=7.2e+02 Score=27.53 Aligned_cols=250 Identities=16% Similarity=0.215 Sum_probs=124.8
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChh-----hH
Q 009471 199 AALVQ-LLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAE-----MA 271 (534)
Q Consensus 199 ~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~-----~~ 271 (534)
+.|.+ +-.+.|+..|..|-.+|..++.++++ +...--+++.+ .+-.+-.|..+|..+-.... .+
T Consensus 8 e~lCk~LY~s~D~~~R~~AE~~L~e~s~spec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qr 78 (1082)
T KOG1410|consen 8 ESLCKDLYESTDPTARHRAEKALAELSESPEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQR 78 (1082)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCHHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 33443 33456788999999999999988874 22222344444 44456677778877754321 22
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHH----HHHHHHHccCC---chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHH
Q 009471 272 RAIVGHGGVRPLIEICQTGDSVSQAA----AACTLKNISAV---PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL 344 (534)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~----a~~aL~nLa~~---~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L 344 (534)
-.+. ..+++++..+.|..... -+..+..+... +..+....-...+..+.+.++.++. +-..-++.+|
T Consensus 79 ldir-----~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~v-e~~~igv~iL 152 (1082)
T KOG1410|consen 79 LDIR-----NYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNV-EHCIIGVQIL 152 (1082)
T ss_pred HHHH-----HHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCch-HHHHHHHHHH
Confidence 2333 56778888766654433 33444444442 2334444445667778888877654 4445556666
Q ss_pred HHHccCChHHHHHHHhcCChHHHH------HhhcCC---chHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHH-hcCCH
Q 009471 345 QNLTASNENLRRSVVSEGGIRSLL------AYLDGP---LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVL-KAGSL 414 (534)
Q Consensus 345 ~~La~~~~~~~~~i~~~g~l~~L~------~~L~~~---~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL-~~~~~ 414 (534)
..++.. +-...+..+.. .-.++. ++-..++..|..... -+...=...|.+..++++- +.-+-
T Consensus 153 sqLvqe-------mN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~-~nlnd~~q~~L~~~vL~L~l~Cl~F 224 (1082)
T KOG1410|consen 153 SQLVQE-------MNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVD-LNLNDRAQLGLLMQVLKLNLNCLNF 224 (1082)
T ss_pred HHHHHH-------hhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcc-cCcccHhHhhHHHHHHHHHhhhccc
Confidence 666541 11111111100 001111 122233333333321 0000000122222222221 10000
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471 415 ----GAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (534)
Q Consensus 415 ----~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 471 (534)
....+...-+++.--....|..+.+...+..+.++.++-++...+.|+.+|..+++.
T Consensus 225 DfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASv 285 (1082)
T KOG1410|consen 225 DFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASV 285 (1082)
T ss_pred cccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHH
Confidence 000011111122212234566666777888999999999999999999999988753
No 327
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=32.08 E-value=6.6e+02 Score=26.85 Aligned_cols=171 Identities=16% Similarity=0.077 Sum_probs=93.6
Q ss_pred ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc--c---------CChHHHHHHHHHHHHccCCchHHHHH
Q 009471 247 ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ--T---------GDSVSQAAAACTLKNISAVPEVRQML 315 (534)
Q Consensus 247 ~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~--~---------~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (534)
.+.+.++...|-..|..+..+-+.... |..|..+.. . .++.+|...+..|.. .... .-
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~ed~~~------V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~A--a~ 315 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLEDPDL------VDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIA--AT 315 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCCCHHH------HHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHH--Hh
Confidence 455677888899999998776333222 244554443 1 245666666665543 1100 00
Q ss_pred HhhCcHHHHHHHhhcC--CChhHHHHHHHHH---HHHccCChHHH----HHHHhcCChHHHHH------hhcCCchHHHH
Q 009471 316 AEEGIVSVMIKLLDCG--ILLGSKEYAAECL---QNLTASNENLR----RSVVSEGGIRSLLA------YLDGPLPQESA 380 (534)
Q Consensus 316 ~e~g~i~~L~~ll~~~--~~~~v~~~a~~~L---~~La~~~~~~~----~~i~~~g~l~~L~~------~L~~~~~~~~a 380 (534)
.-...+..+..-+.+. +. ..+..++..+ ........... ...+..++.+.+-. .-.+...|..+
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~-klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNS-KLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred CCccHHHHHhccccCCcccc-ccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 1133344444444444 22 5566666666 44443222211 12223444444410 00113468899
Q ss_pred HHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 381 VGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 381 ~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
..+|+.|+.....-..-+.+++..|+.-|...+++++...-.+|..++.
T Consensus 395 Ye~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9999999982111111245678999999988888888888888887764
No 328
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=31.89 E-value=1.3e+02 Score=30.52 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=58.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhc
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLV 469 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~ 469 (534)
.+..+.+-|...++.|...|+..+..++.+ ..++..+....|...|..++. +.++.+++.....+..++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 577788888999999999999999999855 778889988899999999998 677888888777777775
No 329
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=31.08 E-value=1e+02 Score=25.54 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=32.2
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471 442 CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480 (534)
Q Consensus 442 ~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (534)
+++.|++-+.++++++...|..+|...+......+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 488999999999999999999999999877755555544
No 330
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=30.63 E-value=4.4e+02 Score=27.63 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH-hhCcHHHHHHHhh
Q 009471 253 GKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA-EEGIVSVMIKLLD 329 (534)
Q Consensus 253 ~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~-e~g~i~~L~~ll~ 329 (534)
.|..|+.+|..+... .+....+.+ +.|+.+|.+....-|..++.++...+.....+..-. -....+.|.+.|.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 566777888777654 222222221 257888888777777777777777665331111000 1233455666666
Q ss_pred cCCChhHHHHHHHHHHHHccCChHHHHHHHhcCC-----hHHHHHhhcC-----Cc--hHHHHHHHHHHh----hc--Cc
Q 009471 330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-----IRSLLAYLDG-----PL--PQESAVGALRNL----VG--SV 391 (534)
Q Consensus 330 ~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~-----l~~L~~~L~~-----~~--~~~~a~~aL~~L----a~--~~ 391 (534)
.+.. ..-......+..+-......-..+.+.|. ++.|-...+. ++ .-+.|-.+.... .. ..
T Consensus 179 ~~~~-~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 179 NPEP-PYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4432 12222222223322222222233334444 2222222221 11 122222222222 21 10
Q ss_pred c-----HHHHHh--cCc---HHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHH
Q 009471 392 S-----QEVLIS--LGF---FPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREV 460 (534)
Q Consensus 392 ~-----~~~l~~--~~~---i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~ 460 (534)
. .+.+-+ ..+ +...-..-...+..|+..++.++..+..-|+- + .-.|+.|++-++ .++..+|..
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K---L--nPiIrpLMdSIK~Een~~LQ~r 332 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK---L--NPIIRPLMDSIKREENELLQQR 332 (441)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---c--cHHHHHHHHHhhccccHHHHHH
Confidence 1 111111 001 11111111233445666666666666543321 1 235777777776 567888999
Q ss_pred HHHHHHHhc
Q 009471 461 AAQAISSLV 469 (534)
Q Consensus 461 A~~aL~~L~ 469 (534)
++.+|..|.
T Consensus 333 sA~slA~Li 341 (441)
T PF12054_consen 333 SAESLARLI 341 (441)
T ss_pred HHHHHHHHH
Confidence 998888887
No 331
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=30.58 E-value=2.2e+02 Score=23.55 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=46.1
Q ss_pred chHHHHHhhc-CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 442 CTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 442 ~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+|.+.+.+. +..++.+..+...++.|+...+=.++++. ..+..+++...... ..+.+..+|..++.+
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~--~l~~~i~~~~~~~~---~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLN--ALMESILKNWTQET---VQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHH--HHHHHHHhccccch---hHHHHHHHHHHHHHc
Confidence 3677888888 77889999999999999866555455554 24444444444431 247778888887766
No 332
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=30.54 E-value=7.8e+02 Score=27.24 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch------h-HHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhc
Q 009471 195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSC------E-NWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSM 266 (534)
Q Consensus 195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~------~-~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~ 266 (534)
.+-++.+|+-+++++++++..|+..+......... + -++.. .-...|..+-++ .+.+.+...+.+|..|+.
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLr-phy~~Lk~i~~~~~~~n~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLR-PHYGVLKEIYESMADSNLKKWLADILSVLAM 125 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhc-cchhHHHHHHHhccCchhHhHHHHHHHHHhe
Confidence 36789999999999999999999999988765421 1 11111 112233333333 356678899999999987
Q ss_pred ChhhHH
Q 009471 267 SAEMAR 272 (534)
Q Consensus 267 ~~~~~~ 272 (534)
..+.+.
T Consensus 126 t~se~~ 131 (878)
T KOG2005|consen 126 TMSERG 131 (878)
T ss_pred eecccc
Confidence 755543
No 333
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=30.53 E-value=2e+02 Score=26.49 Aligned_cols=113 Identities=15% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHhCCChHHHHHHHccC---C---------------hHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCC
Q 009471 273 AIVGHGGVRPLIEICQTG---D---------------SVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGIL 333 (534)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~---~---------------~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~ 333 (534)
.+...|++..++.+++.+ . ..+-..++..|..++.+. +++..+.+. ++.++..+.....
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQI 115 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhc
Confidence 355577777777777531 1 245578888999988854 777777663 3333333332111
Q ss_pred hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhc
Q 009471 334 LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG 389 (534)
Q Consensus 334 ~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~ 389 (534)
..-..+..++..+-.++......+.+.- +..++.++....-+..-+..|..+|.
T Consensus 116 -~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 116 -GYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGRQPRYLDFLSSLCV 169 (207)
T ss_dssp --TTHHHHHHHHHHHTT---------------------------------------
T ss_pred -cCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCCChHHHHHHhhhcc
Confidence 1123456677777777776665554433 77777777653344445556666655
No 334
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=30.27 E-value=3.1e+02 Score=23.56 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=52.9
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHH-HHHHHcc---CCHHHHHHHHHHHHHhhc
Q 009471 197 NIAALVQLLTA-TSPRIREKTVTVICSLAESGS--CENWLVSEGVLPP-LIRLVES---GSTVGKEKATISLQRLSM 266 (534)
Q Consensus 197 ~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~-Lv~lL~~---~~~~~~~~A~~~L~~Ls~ 266 (534)
++..|-+-|.+ .++.++..|+..|-.+..+.. ....+...+.+.- |++++.. .+..++..+...+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45556665654 578899999999999988765 6677777888986 9999974 245788888888877653
No 335
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.58 E-value=4.2e+02 Score=23.89 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=57.0
Q ss_pred hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (534)
++.+++.+++...+.+...+..|+..+.......--+ -...+|.++.+..++++.++..|...+..+.+.-+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 4567888888888999999999998888776532111 11358999999999999999999999999977554
No 336
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=29.17 E-value=6e+02 Score=28.63 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=69.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhHH
Q 009471 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENW 232 (534)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~ 232 (534)
....+...+..++...-...+.++..+..-..-..+. .....+.-..-.+..-..++.....+|..++..++ -...
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4455566677777776666666666654311100000 11112222221222224567778899999998775 4555
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009471 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM 266 (534)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 266 (534)
+-+.+....++.++=+++.++.+.|...|...+.
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 5567899999999999999999999999999875
No 337
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.03 E-value=6.4e+02 Score=26.75 Aligned_cols=80 Identities=25% Similarity=0.342 Sum_probs=50.6
Q ss_pred hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC-------------ChHHHHHHHhcCChHHHHHhh-c--C
Q 009471 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS-------------NENLRRSVVSEGGIRSLLAYL-D--G 373 (534)
Q Consensus 310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~-------------~~~~~~~i~~~g~l~~L~~~L-~--~ 373 (534)
+...-+.+.+.|+.|+.+|....+.+++.+|+..|..|..- ....-+.+.....+..|+..+ . .
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 34444556899999999997555557889998888777541 123334555666667666654 2 1
Q ss_pred CchHHHHHHHHHHhhc
Q 009471 374 PLPQESAVGALRNLVG 389 (534)
Q Consensus 374 ~~~~~~a~~aL~~La~ 389 (534)
......+++++..|.+
T Consensus 133 ~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 133 GSSLVNGVSILIELIR 148 (475)
T ss_pred cchHHHHHHHHHHHHH
Confidence 3345555666555554
No 338
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=28.73 E-value=1.6e+02 Score=34.67 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=62.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC--CcchH
Q 009471 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL--PQNCR 476 (534)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~--~~~~~ 476 (534)
..+.+..++++.++.++..++.++..++.. .+.-.. ++..++-++.+.+.-.+..++..+..+... .....
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~-----v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~ 891 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMAT-----VINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLV 891 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccc
Confidence 366777778888999999999999999864 222222 233444455544444444444444333311 11111
Q ss_pred HHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471 477 EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (534)
Q Consensus 477 ~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~ 514 (534)
.+. --.+++|.++++.. .+.++..+..++..+-.-
T Consensus 892 ~~~--~Llv~pllr~msd~-~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 892 PYN--PLLVVPLLRRMSDQ-IDSVREAATKVFAKLIPL 926 (1549)
T ss_pred ccc--eeehhhhhcccccc-hHHHHHHHHHHHHHHhcc
Confidence 111 23567788888776 346888888888776543
No 339
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=27.82 E-value=79 Score=18.64 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc
Q 009471 211 RIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES 248 (534)
Q Consensus 211 ~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~ 248 (534)
.+|..|+.+|+++.... .++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~~~~----------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEE----------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHh----------HHHHHHHHhcC
Confidence 47888999999884322 35666666654
No 340
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=26.84 E-value=1.3e+03 Score=29.92 Aligned_cols=278 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCC--hHHHHHHH-----ccCChHHHHHHHHHHHHccCCchHHH
Q 009471 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGG--VRPLIEIC-----QTGDSVSQAAAACTLKNISAVPEVRQ 313 (534)
Q Consensus 241 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~--i~~Lv~ll-----~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (534)
.+...+...+.+++..+...+..+-....++.....+.. +...+..+ .++++.++......+. +..-.
T Consensus 485 ~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~ 559 (2341)
T KOG0891|consen 485 CVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDA 559 (2341)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhh
Q ss_pred HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-C
Q 009471 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-S 390 (534)
Q Consensus 314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~ 390 (534)
.....+.+..++..+.++.. ..++.+...+++++..++...-.-+..-.+..+-.+-.+ ..+.+.+..-+..+.. .
T Consensus 560 ~laQ~~~lr~~~~al~~~~l-~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIALHDENF-AIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred hhcCchhHHHHHHHhhhhhh-hhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Q ss_pred ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHh
Q 009471 391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSL 468 (534)
Q Consensus 391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L 468 (534)
...-.-.-...+..++..+...+..+...+..++..|+.. -+--+...+ ..++.+.+.+. ..+..-+..+..++.++
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Q ss_pred c-CCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHHhhc
Q 009471 469 V-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERG 525 (534)
Q Consensus 469 ~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l~~~ 525 (534)
. ...-....+....-.+..|+.-+.......++..++..+.++-..-+........+
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~ 775 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGT 775 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhh
No 341
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.60 E-value=1.5e+02 Score=23.46 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHh
Q 009471 209 SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRL 264 (534)
Q Consensus 209 ~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~L 264 (534)
+..+|+.|+..|..++..-...-.-.+..+...+.+.+.++ +.....-|...|..|
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999987543222222334577788877754 555677777778777
No 342
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=26.34 E-value=2e+02 Score=29.29 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=59.6
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhc
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSM 266 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~ 266 (534)
.++..+.+-|.+.++.|...|+..+..++.+.. .|..+........|..++. +..+.+++....++.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 557888889999999999999999999988765 6777777788899999998 5688888888877777765
No 343
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=25.88 E-value=54 Score=21.60 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=18.9
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHH
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVI 220 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L 220 (534)
.....+.+-+.++++.+|+.|+..|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4456666778888899999988653
No 344
>PLN03205 ATR interacting protein; Provisional
Probab=25.45 E-value=1.2e+02 Score=30.76 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc----CChhHHHHHHhcCchHHHHHhhc----CCChHHHHHHHHHHHHhc--CC
Q 009471 402 FPRLVHVLKAGSLGAQQAAASALCRVC----TSAEMKKLVGEAGCTPLLIKLLE----AKPNSVREVAAQAISSLV--TL 471 (534)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~la----~~~~~~~~i~~~g~v~~Lv~ll~----~~~~~v~~~A~~aL~~L~--~~ 471 (534)
+++|+.+..-++..+...+++.|..+- .+..--+.-++.+.+..+--+.+ ...+.++-.|..++..+. .+
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 444555555555555555555444433 22222223344444433222221 344667777777665554 33
Q ss_pred CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHH
Q 009471 472 PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARK 517 (534)
Q Consensus 472 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~ 517 (534)
+...++.+.....++.+-|+|....+..+++.++-.|.-|..+.|-
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpkl 450 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKL 450 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHH
Confidence 3333333333456778889998876667999999888877766443
No 345
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=9.4e+02 Score=26.50 Aligned_cols=218 Identities=17% Similarity=0.143 Sum_probs=100.7
Q ss_pred cCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc---cCChHHHHHHHHHHHHccCCchH
Q 009471 236 EGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ---TGDSVSQAAAACTLKNISAVPEV 311 (534)
Q Consensus 236 ~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~nLa~~~~~ 311 (534)
..++|.|+..|... ..+....+...|...+....+...+. +.++.-|. +++.+...+...-++.-+....+
T Consensus 358 ~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l~-----e~~ly~lg~a~hp~ee~i~~l~~k~~~~Si~s~~ 432 (896)
T KOG4337|consen 358 DEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKLH-----EQLLYWLGSADHPSEETIATLLNKRCEASISSLN 432 (896)
T ss_pred hhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHHHH-----HHHHHHhhccCCCcHHHHHHHHHHHhhhhhhhhH
Confidence 36899999999874 44556677788888877665544332 33443333 34444333332222221111111
Q ss_pred HHHHHhhC---cHHHHHHHhhcCCChhHHHHHHHHH-----HHHccCCh-----HHHHHHH---hcCChHHHHHhhcC--
Q 009471 312 RQMLAEEG---IVSVMIKLLDCGILLGSKEYAAECL-----QNLTASNE-----NLRRSVV---SEGGIRSLLAYLDG-- 373 (534)
Q Consensus 312 ~~~i~e~g---~i~~L~~ll~~~~~~~v~~~a~~~L-----~~La~~~~-----~~~~~i~---~~g~l~~L~~~L~~-- 373 (534)
. ..++ ++..|+..+..+. +...++.-+ +-++...+ .....+. ...+++.|++.-..
T Consensus 433 --~-~re~v~~iv~tlir~~~~~g---ve~~~l~e~~~~ilgglt~aek~~~s~~y~~Al~N~~lPa~i~~Lle~a~sGe 506 (896)
T KOG4337|consen 433 --S-CREGVETIVNTLIRDLTAGG---VEVRVLEELENIILGGLTFAEKFIESEDYQKALLNVILPAAIKNLLETAVSGE 506 (896)
T ss_pred --H-HhhhHHHHHHHHHHHhhCCC---cccHHHHHHHHHHhccchhcccccchHHHHHHHHhccChhhHHHHHHHHhccC
Confidence 1 1122 2344444333222 222333333 33333111 1111111 12455666665543
Q ss_pred -CchHHHHHHHHHHhhcCccH--HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhh
Q 009471 374 -PLPQESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLL 450 (534)
Q Consensus 374 -~~~~~~a~~aL~~La~~~~~--~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll 450 (534)
|+.-..|..++..+-.+... ....-..+...+.++.++. ++..|+.+|.++--+ +.. +..++..+
T Consensus 507 ~p~~s~~atsAl~~f~l~si~~~~kk~~~~i~hq~~k~f~~t---~rTlA~dIiL~~~P~--~~~-------v~n~ll~l 574 (896)
T KOG4337|consen 507 KPEQSMRATSALAEFFLRSICQTKKKIGAPITHQLIKLFRNT---TRTLAIDIILKCVPD--HQN-------VANLLLTL 574 (896)
T ss_pred CcchhHHHHHHHHhcCchhhhHHHHHhcchHHHHHHHHHhcc---hhHHHHHHHHhcCcc--HHH-------HHHHHHHh
Confidence 44444555555554432111 1112223344444444333 566777777776532 111 23333355
Q ss_pred cCCChHHHHHHHHHHHHhcCCCcchH
Q 009471 451 EAKPNSVREVAAQAISSLVTLPQNCR 476 (534)
Q Consensus 451 ~~~~~~v~~~A~~aL~~L~~~~~~~~ 476 (534)
.+.+.+...+...++..+....+..+
T Consensus 575 ~~~dqE~~~Y~l~~i~ml~~~~p~~k 600 (896)
T KOG4337|consen 575 NPDDQEKWHYLLKAIEMLSGNKPELK 600 (896)
T ss_pred CCChHHHHHHHHHHHHHHhccCchHH
Confidence 55666677777777766665444333
No 346
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=25.21 E-value=7.7e+02 Score=27.78 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=64.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHH-
Q 009471 200 ALVQLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIV- 275 (534)
Q Consensus 200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~- 275 (534)
.+...+.++++..-...+.++..+++-.. .+. ...-.+.-..-.+..-..+......+|..++.. ++....+.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 34444445556666666666666655432 111 111222222222222334566778888888875 44444444
Q ss_pred hCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
+.+....++.++-++++++...|...|.....
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 58889999999999999999999999988775
No 347
>PRK09169 hypothetical protein; Validated
Probab=25.17 E-value=1.6e+03 Score=29.04 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCC-HHHHHHHHHHHHHhhc
Q 009471 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATS-PRIREKTVTVICSLAE 225 (534)
Q Consensus 165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~-~~v~~~A~~~L~~La~ 225 (534)
-++......+...|...+..+++....+ +...|..++.-|+ .++ ...+..+..+-..|..
T Consensus 175 WP~~~~c~~aa~~lA~~la~~~~l~~al-~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~ 236 (2316)
T PRK09169 175 WPDNTDCQTAAEQLADRLASDSRLLQAM-DAQEVANALNALSKWPDSPRCRNAAERLAERLAD 236 (2316)
T ss_pred CCCchHHHHHHHHHHHHhccCHHHHHhc-chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 3444444555666666665555554333 3334444444443 344 3344444333333333
No 348
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.15 E-value=8.8e+02 Score=29.35 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc----C---CHHHHHHHHHHHHHhhcChh-hHHHHHhCCCh
Q 009471 209 SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES----G---STVGKEKATISLQRLSMSAE-MARAIVGHGGV 280 (534)
Q Consensus 209 ~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~----~---~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i 280 (534)
..+++.....+|.++-+... +.+. .| -+.+.+.+++ + ...+...+..+|.-++.+-= .-..-+-++.|
T Consensus 855 ~~evr~~sl~~l~silet~g--e~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVG--EHLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred cceeeHHHHHHHHHHHhccc--hhhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 36777777788877766543 1111 11 3333444432 2 33444555566665554310 01111124456
Q ss_pred HHHHHHHcc-CChHHHHHHHHHHHHccC
Q 009471 281 RPLIEICQT-GDSVSQAAAACTLKNISA 307 (534)
Q Consensus 281 ~~Lv~ll~~-~~~~~~~~a~~aL~nLa~ 307 (534)
+.++.+++. .|..+-..|.+.+|+++.
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 777777654 355566778888888765
No 349
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.06 E-value=1.6e+02 Score=28.92 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=44.9
Q ss_pred hhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh--------------HhHHHHhcCCcHHHHHHHhcC
Q 009471 149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE--------------KNVLAVMGRSNIAALVQLLTA 207 (534)
Q Consensus 149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~--------------~~~~~i~~~g~v~~Lv~lL~~ 207 (534)
......++..++..|..++...+..|+.+|.-++.+.- +|...+.+.|++++++.+|+.
T Consensus 55 ~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 55 FDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45567789999999999999999999999988875421 233455677888888887753
No 350
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=24.49 E-value=96 Score=18.03 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh
Q 009471 294 SQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD 329 (534)
Q Consensus 294 ~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~ 329 (534)
+|..++.+|.++.. ..+++.|++.++
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46778888887764 345666666654
No 351
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.28 E-value=64 Score=33.80 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=52.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH-hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH
Q 009471 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA-EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355 (534)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~-e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (534)
..+-.++...+++++..+..++.+++...++|...+ +...-..+++++..+.+ ++-+.+..++..+.. ++-.+
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~-~~~~~~~~a~~~~~~-~eil~ 404 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEP-RVNKAAARALAILGE-NEILR 404 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccccc-ccchhhhHHHHHhhh-hHHHH
Confidence 555667778899999999999999999877776554 35555667777766665 666666666666654 34443
No 352
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.51 E-value=1e+03 Score=26.34 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=105.8
Q ss_pred hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHH------HHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 009471 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVL------AVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAE 225 (534)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~------~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~ 225 (534)
...+.-++.+++..|++.+..|+..+.+..+.+..... .+.. .....|..+-++ .++..+...+.+|+.|+.
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLr-phy~~Lk~i~~~~~~~n~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLR-PHYGVLKEIYESMADSNLKKWLADILSVLAM 125 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhc-cchhHHHHHHHhccCchhHhHHHHHHHHHhe
Confidence 45688899999999999999999999998865432211 1111 234444444443 346788888899999987
Q ss_pred CCchhHHHHhc---C-----------CHHHHHHHHccC----------CHHHHHHHHHHHHHh-hcC--hhhHHHHHhCC
Q 009471 226 SGSCENWLVSE---G-----------VLPPLIRLVESG----------STVGKEKATISLQRL-SMS--AEMARAIVGHG 278 (534)
Q Consensus 226 ~~~~~~~l~~~---g-----------~i~~Lv~lL~~~----------~~~~~~~A~~~L~~L-s~~--~~~~~~l~~~g 278 (534)
..+.+.....- | -+..|..-+... -.+..+.+..++... ..| .+....+.+-+
T Consensus 126 t~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Eve 205 (878)
T KOG2005|consen 126 TMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLMEVE 205 (878)
T ss_pred eecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHHhh
Confidence 55422222111 1 122232222110 122333333333322 233 23345566777
Q ss_pred ChHHHHHHHccC-----------------ChH---HHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHH
Q 009471 279 GVRPLIEICQTG-----------------DSV---SQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKE 338 (534)
Q Consensus 279 ~i~~Lv~ll~~~-----------------~~~---~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~ 338 (534)
+|..++...... .|+ +...+..+-..+...++.-.-.+.-+-.+.+.+.+.+..++..+.
T Consensus 206 ~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kK 285 (878)
T KOG2005|consen 206 GIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKK 285 (878)
T ss_pred hHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHH
Confidence 788777776542 222 334455555555554444333344444566666666666545667
Q ss_pred HHHHHHHH
Q 009471 339 YAAECLQN 346 (534)
Q Consensus 339 ~a~~~L~~ 346 (534)
+.+..|+.
T Consensus 286 Q~~ymLaR 293 (878)
T KOG2005|consen 286 QMAYMLAR 293 (878)
T ss_pred HHHHHHHh
Confidence 66666654
No 353
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.20 E-value=7.7e+02 Score=27.50 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=48.8
Q ss_pred HHHHHhhcCCchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhc
Q 009471 365 RSLLAYLDGPLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVC 428 (534)
Q Consensus 365 ~~L~~~L~~~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~la 428 (534)
..|-.++..+..|..++..|+.+.. +.....+.+...++.|++.|.. .+..+...|+.+|.-|-
T Consensus 73 ~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 73 DKLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 3344445557889999999999998 5666788899999999998864 45677777777777664
No 354
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.75 E-value=2e+02 Score=30.26 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=53.3
Q ss_pred hHHHHHHHccCChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcC-CChhHHHHHHHHHHHHc
Q 009471 280 VRPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCG-ILLGSKEYAAECLQNLT 348 (534)
Q Consensus 280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~-~~~~v~~~a~~~L~~La 348 (534)
+..|.+-+.+.++.++..|+.+|--+..+. .+...+.+.+++.-++.+.+.. .+..+|+.++..|-.=.
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 466667777788888888888777676644 6677888999999999999766 55578999888876543
No 355
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=21.68 E-value=1.5e+03 Score=27.40 Aligned_cols=240 Identities=17% Similarity=0.142 Sum_probs=123.1
Q ss_pred hhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471 149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (534)
Q Consensus 149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (534)
+=+....++.|+..+-+...+.|.-+.-++.++++...+. ++.. + +.....+.++.++-+..
T Consensus 72 ~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~-------~~~~----~-------led~~~rll~v~~Ldrf 133 (1549)
T KOG0392|consen 72 QWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDS-------LSYE----L-------LEDLLIRLLCVLALDRF 133 (1549)
T ss_pred cccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcch-------hhHH----H-------HHHHHHHHHHHHHHHHh
Confidence 3345667888888888888888888888888877533211 1110 0 12222222222221110
Q ss_pred hhHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471 229 CENWLVSEGVLPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (534)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (534)
-... .+.-..+++.++++|..+..+...... ...+..+..++....++++.-.+..+.....
T Consensus 134 --------------~dfisd~vvapVre~caq~L~~~l~~~~~s~~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~a 196 (1549)
T KOG0392|consen 134 --------------GDFISDNVVAPVREACAQALGAYLKHMDESLI---KETLDILLQMLRQPNWEIRHGGLLGIKYNVA 196 (1549)
T ss_pred --------------cccccccchhhhHHHHHHHHHHHHHhhhhHhh---HHHHHHHHHHHcCcchhheechHHHHHHHHH
Confidence 0000 111234677778888777665322111 1113666777777667666544444432221
Q ss_pred CchHHHHHHh---hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH-HHHHhcCChHHHHHhhcC-Cc---hHHH
Q 009471 308 VPEVRQMLAE---EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR-RSVVSEGGIRSLLAYLDG-PL---PQES 379 (534)
Q Consensus 308 ~~~~~~~i~e---~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~-~~i~~~g~l~~L~~~L~~-~~---~~~~ 379 (534)
.+..+.. ..+++..++-+++.++ +++..|+..+..++......+ +.+. ..+..+...+.. .+ ....
T Consensus 197 ---ir~d~l~~~~~~vl~~~i~~L~ds~d-dv~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~s 270 (1549)
T KOG0392|consen 197 ---IRQDLLFQLLNLVLDFVIEGLEDSDD-DVRSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTAS 270 (1549)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhhhcch-HHHHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHH
Confidence 2222222 3456666777777776 788888888887776332211 1111 112223332211 11 1222
Q ss_pred HHHHHHHhhcCc-cH----HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 380 AVGALRNLVGSV-SQ----EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 380 a~~aL~~La~~~-~~----~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
....+..++... .. +.-.+.|.++.+..++++.-..++..++..+..|..
T Consensus 271 i~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 271 IMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLE 325 (1549)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333333311 11 111235788888888888777888888888887764
No 356
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=21.49 E-value=7.2e+02 Score=23.78 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCc-hhHH
Q 009471 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS-CENW 232 (534)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~-~~~~ 232 (534)
.+.+++.++.++. ---..+...+.++-...-..+..|-++.|.+++.+++ .-+|..|+.+|..++...+ .|+.
T Consensus 75 ~~~li~l~~~~~~----~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~ 150 (249)
T PF06685_consen 75 LPPLIRLFSQDDD----FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREE 150 (249)
T ss_pred HHHHHHHHcCCcc----hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHH
Q ss_pred HHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHH
Q 009471 233 LVSEGVLPPLIRL-VESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRP 282 (534)
Q Consensus 233 l~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~ 282 (534)
+++. +..++.. ++..+..+...-...+..|-.. .+..+...+.|.|+.
T Consensus 151 vi~~--f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 151 VIQY--FRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHH--HHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
No 357
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.38 E-value=63 Score=23.43 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=16.0
Q ss_pred ccCccchhhHHHHHHhccc
Q 009471 37 IKGFPGRWKMIISKLEQIP 55 (534)
Q Consensus 37 ~~~f~~~~~~i~~k~~~l~ 55 (534)
-.+++.+|..+|+||...+
T Consensus 50 ~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 50 PPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred CCCCcccHHHHHHHHHhcC
Confidence 3678999999999998754
No 358
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=21.25 E-value=2.4e+02 Score=25.87 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=48.0
Q ss_pred hhHHHHHHhcCchHHHHHhhcC---CC---------------hHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhh
Q 009471 431 AEMKKLVGEAGCTPLLIKLLEA---KP---------------NSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQL 491 (534)
Q Consensus 431 ~~~~~~i~~~g~v~~Lv~ll~~---~~---------------~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~l 491 (534)
...++.+.+.|++..+++++.. .. ..+...+...|.+++.. ..|+..+.+. ++.+...
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~---~~~l~~~ 109 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH---LDFLISI 109 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---HH-----
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HhHHHHH
Confidence 3556677778888888888852 11 35667888999999844 6677777663 3333322
Q ss_pred cCCCCchhHHHHHHHHHHhhchhHHHHHHHHhhccccccc
Q 009471 492 LDPSPQNTAKKYAVACLASLSPSARKLLERLERGRLRSFF 531 (534)
Q Consensus 492 L~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l~~~~~~~~~ 531 (534)
+..... ..--.+..+|+.+-.++++++.++....+..++
T Consensus 110 ~~~~~~-~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i 148 (207)
T PF01365_consen 110 FMQLQI-GYGLGALDVLTEIFRDNPELCESISEEHIEKFI 148 (207)
T ss_dssp HHCCCH--TTHHHHHHHHHHHTT-----------------
T ss_pred HHHhhc-cCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHH
Confidence 222110 112356778888888888888888766555443
No 359
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.49 E-value=2.2e+02 Score=30.05 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=51.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009471 200 ALVQLLTATSPRIREKTVTVICSLAESGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS 267 (534)
Q Consensus 200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~ 267 (534)
.+-.+..+.+++++.+|..++.+++.+.++|.... .......+++++..+.+.+-+.++.++..+..+
T Consensus 332 ~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 332 ALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred HHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhh
Confidence 33344455789999999999999999887665444 345677788888888888888888888877754
No 360
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.47 E-value=1.6e+03 Score=27.29 Aligned_cols=147 Identities=9% Similarity=-0.012 Sum_probs=86.5
Q ss_pred CCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHH
Q 009471 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356 (534)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~ 356 (534)
.|++|.|-.=|.+++...|..|...++.+...+..+-.=........++.-+.+.+. ++|..++....++-..++....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~-~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISV-EVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCCh-hhhhhHHHHhHHHHhcCchhhh
Confidence 456788877788889999999999999988766544331124566677777777777 7888888888877665554322
Q ss_pred HHHhcCChHHHHH-hhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471 357 SVVSEGGIRSLLA-YLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (534)
Q Consensus 357 ~i~~~g~l~~L~~-~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~ 429 (534)
.. ++-..++ ..-+++++.....++..+......-.+... .+..+.+-+++....|+..|+.-|..+-.
T Consensus 337 ~~----~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 AS----TILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HH----HHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11 1112222 222233322211111111111111122223 45555566677888999999988887754
No 361
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.22 E-value=4.9e+02 Score=31.28 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=78.7
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 009471 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAI 274 (534)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~l 274 (534)
|++|.|-.-|.+++.++|..|+..++.+-......-.=-........+.-+.+.+.+++-.+.....+.-. +++.....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~ 338 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS 338 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH
Confidence 67888888888999999999999999998776532220011345556666666777777766665554322 33333322
Q ss_pred HhCCChHHHHHHH-ccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471 275 VGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (534)
Q Consensus 275 ~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~ 349 (534)
.....+. .+.|+.++.....++ ..+........++.. .+..+.+.+++... .||..|+.-|..+-.
T Consensus 339 ------~~~~~l~~~~~D~~~rir~~v~i-~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~-~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 339 ------TILLALRERDLDEDVRVRTQVVI-VACDVMKFKLVYIPL-LLKLVAERLRDKKI-KVRKQAMNGLAQLYK 405 (1266)
T ss_pred ------HHHHHHHhhcCChhhhheeeEEE-EEeehhHhhhhhhHH-HHHHHHHHHhhhhH-HHHHHHHHHHHHHHH
Confidence 1111121 334454443222111 111111222222223 45555555566665 677777777666543
Done!